Query 038205
Match_columns 375
No_of_seqs 301 out of 2573
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.3E-50 1.8E-54 403.6 27.1 348 8-372 5-410 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5.3E-39 1.1E-43 293.0 17.3 240 127-373 1-250 (287)
3 PLN03210 Resistant to P. syrin 100.0 5.4E-36 1.2E-40 317.3 23.0 320 21-373 76-436 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.5 2.1E-11 4.5E-16 110.0 23.4 197 141-341 41-266 (269)
5 PF01637 Arch_ATPase: Archaeal 99.4 5.8E-13 1.3E-17 117.3 8.9 195 124-321 1-233 (234)
6 PRK00411 cdc6 cell division co 99.4 2.4E-11 5.3E-16 115.8 18.9 219 122-343 30-284 (394)
7 PF05729 NACHT: NACHT domain 99.3 1.3E-11 2.8E-16 102.7 10.4 142 144-292 1-163 (166)
8 PRK04841 transcriptional regul 99.3 9.6E-11 2.1E-15 123.5 17.9 202 114-328 6-231 (903)
9 COG2256 MGS1 ATPase related to 99.3 1.3E-10 2.8E-15 105.5 15.5 224 118-373 20-266 (436)
10 TIGR02928 orc1/cdc6 family rep 99.2 8E-10 1.7E-14 104.3 18.7 218 122-342 15-275 (365)
11 TIGR00635 ruvB Holliday juncti 99.1 1.6E-09 3.4E-14 99.6 16.1 187 121-324 3-203 (305)
12 PRK13342 recombination factor 99.1 5.1E-10 1.1E-14 106.9 13.2 177 118-322 8-196 (413)
13 PRK00080 ruvB Holliday junctio 99.1 2E-09 4.3E-14 99.9 16.5 191 118-324 21-224 (328)
14 PRK06893 DNA replication initi 99.1 2.3E-09 5E-14 94.1 12.6 174 119-322 13-203 (229)
15 PRK14961 DNA polymerase III su 99.0 3.8E-08 8.3E-13 92.4 18.7 194 118-319 12-217 (363)
16 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.3E-08 2.9E-13 89.3 14.7 173 121-323 14-202 (226)
17 PRK07003 DNA polymerase III su 99.0 6.7E-09 1.5E-13 102.7 13.8 183 118-321 12-220 (830)
18 PRK12402 replication factor C 99.0 1.1E-08 2.3E-13 95.6 14.7 201 118-320 11-224 (337)
19 PRK14949 DNA polymerase III su 99.0 1.5E-08 3.2E-13 102.2 14.7 182 118-319 12-217 (944)
20 PRK12323 DNA polymerase III su 98.9 1.6E-08 3.5E-13 98.7 14.4 200 118-320 12-223 (700)
21 PRK14960 DNA polymerase III su 98.9 1.9E-08 4.1E-13 98.5 14.7 181 118-319 11-216 (702)
22 PLN03025 replication factor C 98.9 1.6E-08 3.5E-13 93.4 13.7 183 118-318 9-196 (319)
23 TIGR02903 spore_lon_C ATP-depe 98.9 3.8E-07 8.2E-12 91.1 24.0 204 118-325 150-398 (615)
24 PRK00440 rfc replication facto 98.9 3.3E-08 7.2E-13 91.4 15.5 182 118-319 13-200 (319)
25 PRK14963 DNA polymerase III su 98.9 3E-08 6.5E-13 96.3 15.6 198 118-319 10-214 (504)
26 KOG2028 ATPase related to the 98.9 8.9E-09 1.9E-13 92.3 10.3 150 118-291 134-293 (554)
27 PRK14962 DNA polymerase III su 98.9 3.4E-08 7.4E-13 95.2 15.2 201 118-338 10-239 (472)
28 PF05496 RuvB_N: Holliday junc 98.9 1.3E-08 2.8E-13 86.6 10.8 177 118-325 20-224 (233)
29 COG2909 MalT ATP-dependent tra 98.9 4.7E-08 1E-12 96.7 15.7 201 117-327 14-238 (894)
30 PRK05564 DNA polymerase III su 98.9 8.4E-08 1.8E-12 88.4 16.5 176 121-320 3-188 (313)
31 PRK14956 DNA polymerase III su 98.9 3.3E-08 7.2E-13 94.0 13.6 192 118-317 14-217 (484)
32 PRK06645 DNA polymerase III su 98.9 5.7E-08 1.2E-12 94.0 15.3 197 118-319 17-226 (507)
33 PRK14957 DNA polymerase III su 98.9 6.7E-08 1.5E-12 94.2 15.5 184 118-322 12-221 (546)
34 COG1474 CDC6 Cdc6-related prot 98.8 3.4E-07 7.3E-12 85.4 19.0 168 122-293 17-204 (366)
35 PRK09112 DNA polymerase III su 98.8 1.7E-07 3.8E-12 87.0 16.6 200 116-322 17-240 (351)
36 PRK14951 DNA polymerase III su 98.8 1E-07 2.2E-12 94.2 15.8 198 118-320 12-223 (618)
37 PRK14958 DNA polymerase III su 98.8 8.9E-08 1.9E-12 93.3 15.2 181 118-319 12-217 (509)
38 PRK14964 DNA polymerase III su 98.8 8.8E-08 1.9E-12 92.1 14.7 181 118-318 9-213 (491)
39 PRK08691 DNA polymerase III su 98.8 6.6E-08 1.4E-12 95.5 13.8 181 118-319 12-217 (709)
40 PRK07471 DNA polymerase III su 98.8 2.3E-07 4.9E-12 86.7 16.8 201 116-322 13-238 (365)
41 PRK07994 DNA polymerase III su 98.8 6.5E-08 1.4E-12 95.8 13.6 194 118-319 12-217 (647)
42 TIGR02397 dnaX_nterm DNA polym 98.8 2.3E-07 5E-12 87.2 16.9 183 118-321 10-217 (355)
43 PRK08084 DNA replication initi 98.8 1.1E-07 2.5E-12 83.7 13.7 164 128-321 30-208 (235)
44 PF13401 AAA_22: AAA domain; P 98.8 7.2E-09 1.6E-13 82.6 5.5 115 142-261 3-125 (131)
45 PRK04195 replication factor C 98.8 6.6E-08 1.4E-12 94.3 13.1 176 118-319 10-199 (482)
46 PF13173 AAA_14: AAA domain 98.8 1.3E-08 2.7E-13 81.0 6.5 120 143-284 2-127 (128)
47 cd00009 AAA The AAA+ (ATPases 98.8 6.1E-08 1.3E-12 78.4 10.6 122 126-263 2-131 (151)
48 PRK07940 DNA polymerase III su 98.8 2.8E-07 6.1E-12 86.8 16.2 175 121-320 4-211 (394)
49 PRK14955 DNA polymerase III su 98.8 1.8E-07 3.8E-12 89.0 14.6 201 118-319 12-225 (397)
50 PRK13341 recombination factor 98.7 7.8E-08 1.7E-12 97.0 12.1 173 118-317 24-212 (725)
51 PRK14969 DNA polymerase III su 98.7 2.1E-07 4.6E-12 91.2 14.5 179 118-317 12-215 (527)
52 cd01128 rho_factor Transcripti 98.7 4.9E-08 1.1E-12 86.1 8.9 95 141-236 14-115 (249)
53 PRK05896 DNA polymerase III su 98.7 3.3E-07 7.1E-12 89.7 15.3 199 118-324 12-223 (605)
54 PRK09087 hypothetical protein; 98.7 2.1E-07 4.5E-12 81.3 12.4 160 142-340 43-221 (226)
55 PRK14959 DNA polymerase III su 98.7 3.7E-07 8E-12 89.7 15.1 200 118-326 12-225 (624)
56 PRK07764 DNA polymerase III su 98.7 3.2E-07 6.9E-12 93.8 15.1 179 118-317 11-216 (824)
57 PF13191 AAA_16: AAA ATPase do 98.7 9.5E-08 2.1E-12 80.9 9.6 51 123-173 1-54 (185)
58 PRK08727 hypothetical protein; 98.7 4.5E-07 9.7E-12 79.8 13.8 169 121-319 18-201 (233)
59 TIGR00678 holB DNA polymerase 98.7 7.9E-07 1.7E-11 75.7 15.0 160 133-318 3-187 (188)
60 PTZ00112 origin recognition co 98.7 8.5E-07 1.8E-11 88.9 17.0 220 122-343 755-1008(1164)
61 KOG0989 Replication factor C, 98.7 9.1E-08 2E-12 84.2 9.0 186 118-315 32-223 (346)
62 PRK14970 DNA polymerase III su 98.7 7.8E-07 1.7E-11 84.0 16.1 180 118-317 13-204 (367)
63 PRK09111 DNA polymerase III su 98.7 4.8E-07 1E-11 89.6 14.6 198 118-320 20-231 (598)
64 PRK14952 DNA polymerase III su 98.7 9.2E-07 2E-11 87.1 16.4 184 118-322 9-220 (584)
65 TIGR03345 VI_ClpV1 type VI sec 98.6 7.1E-07 1.5E-11 92.3 15.2 181 118-315 183-389 (852)
66 PRK14953 DNA polymerase III su 98.6 1.7E-06 3.6E-11 84.0 16.8 180 118-319 12-217 (486)
67 PRK14954 DNA polymerase III su 98.6 1.2E-06 2.7E-11 86.8 15.8 199 118-317 12-223 (620)
68 PRK14950 DNA polymerase III su 98.6 1.6E-06 3.4E-11 86.5 16.7 195 118-319 12-218 (585)
69 TIGR01242 26Sp45 26S proteasom 98.6 3.6E-07 7.8E-12 86.0 11.3 171 122-317 122-329 (364)
70 PRK09376 rho transcription ter 98.6 1.9E-07 4.1E-12 86.2 8.9 94 141-235 167-267 (416)
71 PTZ00202 tuzin; Provisional 98.6 9.3E-07 2E-11 82.3 13.1 166 117-292 257-434 (550)
72 PRK03992 proteasome-activating 98.6 1.1E-06 2.4E-11 83.3 13.8 198 123-345 132-376 (389)
73 PRK05642 DNA replication initi 98.6 1.4E-06 2.9E-11 76.8 13.1 148 144-321 46-207 (234)
74 PRK08903 DnaA regulatory inact 98.6 8.2E-07 1.8E-11 77.9 11.7 173 120-326 16-203 (227)
75 PF05621 TniB: Bacterial TniB 98.6 4E-06 8.7E-11 74.8 15.9 189 128-322 43-261 (302)
76 PRK07133 DNA polymerase III su 98.6 2.2E-06 4.7E-11 85.7 15.7 190 118-317 14-214 (725)
77 TIGR02881 spore_V_K stage V sp 98.5 6.7E-07 1.5E-11 80.2 11.1 133 143-293 42-192 (261)
78 PRK14971 DNA polymerase III su 98.5 3.1E-06 6.6E-11 84.4 16.4 180 118-319 13-219 (614)
79 PRK14948 DNA polymerase III su 98.5 4.4E-06 9.5E-11 83.3 16.8 196 118-319 12-219 (620)
80 PRK06305 DNA polymerase III su 98.5 4.6E-06 1E-10 80.4 16.1 185 118-322 13-223 (451)
81 PHA02544 44 clamp loader, smal 98.5 1.9E-06 4.1E-11 79.7 13.0 147 118-290 17-171 (316)
82 PF00308 Bac_DnaA: Bacterial d 98.5 1.5E-06 3.3E-11 75.5 11.6 158 143-319 34-205 (219)
83 PRK08451 DNA polymerase III su 98.5 4.7E-06 1E-10 81.1 15.9 181 118-319 10-215 (535)
84 PF14516 AAA_35: AAA-like doma 98.5 2E-05 4.4E-10 73.1 19.6 204 117-328 6-245 (331)
85 TIGR00767 rho transcription te 98.5 9.2E-07 2E-11 82.1 10.0 94 141-235 166-266 (415)
86 PRK14087 dnaA chromosomal repl 98.5 2.1E-06 4.5E-11 82.7 12.4 182 144-341 142-348 (450)
87 PRK14965 DNA polymerase III su 98.5 5.2E-06 1.1E-10 82.5 15.6 197 118-322 12-221 (576)
88 PRK06647 DNA polymerase III su 98.5 6.6E-06 1.4E-10 81.2 16.1 191 118-319 12-217 (563)
89 PTZ00454 26S protease regulato 98.4 4.5E-06 9.8E-11 78.9 13.4 197 122-342 145-387 (398)
90 PRK05563 DNA polymerase III su 98.4 1.3E-05 2.8E-10 79.4 16.7 193 118-318 12-216 (559)
91 TIGR02880 cbbX_cfxQ probable R 98.4 4E-06 8.8E-11 75.9 12.2 131 145-293 60-209 (284)
92 CHL00181 cbbX CbbX; Provisiona 98.4 9.8E-06 2.1E-10 73.4 13.9 132 144-293 60-210 (287)
93 COG3899 Predicted ATPase [Gene 98.3 7.6E-06 1.6E-10 84.7 14.1 203 124-328 2-266 (849)
94 TIGR03346 chaperone_ClpB ATP-d 98.3 1.1E-05 2.4E-10 84.1 14.8 159 118-292 169-349 (852)
95 TIGR02639 ClpA ATP-dependent C 98.3 5E-06 1.1E-10 85.3 11.9 158 118-292 178-358 (731)
96 COG2255 RuvB Holliday junction 98.3 1.1E-05 2.3E-10 70.7 11.7 175 118-326 22-227 (332)
97 PRK10865 protein disaggregatio 98.3 9.1E-06 2E-10 84.4 13.1 158 118-292 174-354 (857)
98 TIGR00362 DnaA chromosomal rep 98.3 1.1E-05 2.5E-10 77.1 12.9 179 144-341 137-337 (405)
99 KOG2227 Pre-initiation complex 98.3 0.00011 2.4E-09 68.6 18.7 205 120-327 148-373 (529)
100 PRK14088 dnaA chromosomal repl 98.3 2.4E-05 5.2E-10 75.3 15.0 192 132-341 118-332 (440)
101 PRK06620 hypothetical protein; 98.3 6E-06 1.3E-10 71.5 9.4 134 144-319 45-186 (214)
102 CHL00095 clpC Clp protease ATP 98.2 1.1E-05 2.4E-10 83.8 12.6 157 119-291 176-353 (821)
103 PRK00149 dnaA chromosomal repl 98.2 2.9E-05 6.3E-10 75.3 14.7 193 130-341 133-349 (450)
104 COG1373 Predicted ATPase (AAA+ 98.2 1E-05 2.3E-10 76.7 11.1 134 127-286 22-161 (398)
105 PRK05707 DNA polymerase III su 98.2 3.5E-05 7.6E-10 71.1 14.3 157 143-321 22-202 (328)
106 COG3903 Predicted ATPase [Gene 98.2 1.3E-06 2.8E-11 80.3 4.5 217 143-371 14-238 (414)
107 PTZ00361 26 proteosome regulat 98.2 2E-05 4.4E-10 75.1 12.5 197 122-342 183-425 (438)
108 TIGR01241 FtsH_fam ATP-depende 98.2 3.9E-05 8.5E-10 75.3 14.5 199 120-342 53-296 (495)
109 KOG0991 Replication factor C, 98.2 1.2E-05 2.7E-10 68.2 9.3 68 118-185 23-90 (333)
110 CHL00176 ftsH cell division pr 98.2 3E-05 6.5E-10 77.6 13.6 172 120-315 181-387 (638)
111 PRK14086 dnaA chromosomal repl 98.1 3.7E-05 8E-10 75.6 12.9 179 144-341 315-515 (617)
112 PRK07399 DNA polymerase III su 98.1 0.00011 2.3E-09 67.5 15.3 195 121-321 3-220 (314)
113 smart00382 AAA ATPases associa 98.1 1.3E-05 2.8E-10 64.0 8.3 89 143-237 2-91 (148)
114 TIGR03689 pup_AAA proteasome A 98.1 3.8E-05 8.2E-10 74.4 11.9 160 122-293 182-379 (512)
115 PF00004 AAA: ATPase family as 98.1 7.3E-06 1.6E-10 65.1 5.9 23 146-168 1-23 (132)
116 TIGR00602 rad24 checkpoint pro 98.1 1.5E-05 3.3E-10 79.1 9.0 51 118-168 80-135 (637)
117 COG2812 DnaX DNA polymerase II 98.1 3.3E-05 7.2E-10 74.4 10.9 189 118-314 12-212 (515)
118 PRK11331 5-methylcytosine-spec 98.1 1.9E-05 4.1E-10 74.7 9.0 69 122-192 175-243 (459)
119 TIGR00763 lon ATP-dependent pr 98.1 0.00081 1.8E-08 69.6 21.8 45 124-168 322-372 (775)
120 COG2884 FtsE Predicted ATPase 98.0 1.6E-05 3.4E-10 65.6 7.2 124 141-270 26-205 (223)
121 COG3267 ExeA Type II secretory 98.0 0.00024 5.2E-09 61.6 14.6 188 130-323 39-246 (269)
122 CHL00195 ycf46 Ycf46; Provisio 98.0 8.5E-05 1.9E-09 72.0 13.4 175 121-317 227-430 (489)
123 PRK08769 DNA polymerase III su 98.0 0.0003 6.5E-09 64.4 16.2 176 128-322 10-208 (319)
124 PRK06871 DNA polymerase III su 98.0 0.00039 8.5E-09 63.8 16.8 178 129-319 9-200 (325)
125 PRK12422 chromosomal replicati 98.0 8.7E-05 1.9E-09 71.4 12.9 151 144-315 142-306 (445)
126 PF05673 DUF815: Protein of un 98.0 0.00011 2.4E-09 63.7 11.9 54 118-171 23-80 (249)
127 COG0593 DnaA ATPase involved i 98.0 4.6E-05 1E-09 71.3 10.1 132 143-293 113-258 (408)
128 PF10443 RNA12: RNA12 protein; 98.0 0.00029 6.2E-09 65.9 15.2 193 127-329 1-285 (431)
129 PRK12608 transcription termina 98.0 7.6E-05 1.6E-09 69.1 11.3 104 131-235 120-231 (380)
130 PRK06090 DNA polymerase III su 98.0 0.00097 2.1E-08 61.1 18.4 168 129-322 10-201 (319)
131 PRK11034 clpA ATP-dependent Cl 98.0 2.9E-05 6.2E-10 79.1 9.0 157 120-292 184-362 (758)
132 KOG2543 Origin recognition com 97.9 6.1E-05 1.3E-09 68.6 9.7 198 122-326 6-230 (438)
133 COG1222 RPT1 ATP-dependent 26S 97.9 0.00029 6.2E-09 63.9 13.9 193 124-343 153-394 (406)
134 PRK08058 DNA polymerase III su 97.9 0.00025 5.4E-09 65.7 14.2 149 124-291 7-181 (329)
135 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00026 5.7E-09 68.3 13.9 171 121-315 189-395 (802)
136 COG0466 Lon ATP-dependent Lon 97.9 0.00061 1.3E-08 67.1 16.6 155 124-292 325-508 (782)
137 PRK07993 DNA polymerase III su 97.9 0.00075 1.6E-08 62.5 16.7 179 129-319 9-201 (334)
138 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 4.1E-05 8.9E-10 67.0 7.8 120 141-265 28-202 (254)
139 PRK10536 hypothetical protein; 97.9 6.5E-05 1.4E-09 65.9 8.9 133 122-262 55-213 (262)
140 PRK08181 transposase; Validate 97.9 8.6E-05 1.9E-09 66.4 9.8 78 136-235 101-178 (269)
141 PF13177 DNA_pol3_delta2: DNA 97.9 0.00012 2.5E-09 60.6 9.8 135 126-279 1-161 (162)
142 PRK10787 DNA-binding ATP-depen 97.9 0.00032 7E-09 72.1 15.0 155 124-292 324-506 (784)
143 PRK12727 flagellar biosynthesi 97.9 0.00079 1.7E-08 65.1 16.4 88 142-234 349-438 (559)
144 TIGR01243 CDC48 AAA family ATP 97.9 0.00025 5.5E-09 73.0 13.9 172 122-317 453-658 (733)
145 KOG0733 Nuclear AAA ATPase (VC 97.9 0.0003 6.5E-09 67.9 13.1 130 142-293 544-693 (802)
146 PRK14722 flhF flagellar biosyn 97.8 0.0021 4.5E-08 60.1 18.4 88 142-234 136-225 (374)
147 KOG0731 AAA+-type ATPase conta 97.8 0.00032 6.9E-09 70.2 13.7 178 119-319 308-521 (774)
148 PF04665 Pox_A32: Poxvirus A32 97.8 4.3E-05 9.4E-10 66.6 6.9 36 144-181 14-49 (241)
149 TIGR03499 FlhF flagellar biosy 97.8 0.0013 2.7E-08 59.7 16.6 86 142-233 193-281 (282)
150 PRK08118 topology modulation p 97.8 9.7E-06 2.1E-10 67.4 2.5 35 144-178 2-37 (167)
151 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00011 2.5E-09 61.0 8.6 118 141-266 25-152 (166)
152 COG1120 FepC ABC-type cobalami 97.8 6.4E-05 1.4E-09 66.1 7.3 126 141-270 26-207 (258)
153 cd03222 ABC_RNaseL_inhibitor T 97.8 6.2E-05 1.4E-09 63.0 6.9 106 141-266 23-136 (177)
154 cd03247 ABCC_cytochrome_bd The 97.8 8.4E-05 1.8E-09 62.5 7.7 27 142-168 27-53 (178)
155 COG1126 GlnQ ABC-type polar am 97.8 0.00015 3.1E-09 61.4 8.5 122 141-268 26-202 (240)
156 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00066 1.4E-08 60.9 13.4 38 128-167 8-45 (262)
157 PRK08116 hypothetical protein; 97.8 4E-05 8.6E-10 68.8 5.5 102 143-261 114-220 (268)
158 cd03238 ABC_UvrA The excision 97.7 0.0001 2.2E-09 61.7 7.1 113 141-266 19-153 (176)
159 PF00448 SRP54: SRP54-type pro 97.7 8.7E-05 1.9E-09 63.3 6.5 57 143-201 1-58 (196)
160 cd03228 ABCC_MRP_Like The MRP 97.7 0.00014 3.1E-09 60.7 7.7 28 141-168 26-53 (171)
161 COG1136 SalX ABC-type antimicr 97.7 0.00012 2.6E-09 63.1 7.2 126 141-270 29-211 (226)
162 PRK07261 topology modulation p 97.7 0.00012 2.7E-09 61.1 7.0 34 145-178 2-36 (171)
163 TIGR01243 CDC48 AAA family ATP 97.7 0.00055 1.2E-08 70.6 13.2 172 122-317 178-382 (733)
164 PRK06964 DNA polymerase III su 97.7 0.0025 5.5E-08 59.0 15.8 90 222-320 130-223 (342)
165 cd03246 ABCC_Protease_Secretio 97.7 0.00012 2.7E-09 61.2 6.7 28 141-168 26-53 (173)
166 COG1223 Predicted ATPase (AAA+ 97.6 0.00016 3.5E-09 62.6 7.1 171 121-316 120-319 (368)
167 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.0002 4.3E-09 58.0 7.2 106 141-267 24-132 (144)
168 cd03230 ABC_DR_subfamily_A Thi 97.6 0.00022 4.8E-09 59.7 7.7 109 141-266 24-159 (173)
169 PF01695 IstB_IS21: IstB-like 97.6 5.8E-05 1.3E-09 63.4 4.0 37 142-180 46-82 (178)
170 cd03216 ABC_Carb_Monos_I This 97.6 0.0001 2.3E-09 61.0 5.2 117 141-266 24-146 (163)
171 TIGR01069 mutS2 MutS2 family p 97.6 5.4E-05 1.2E-09 77.6 4.1 188 143-343 322-522 (771)
172 cd03214 ABC_Iron-Siderophores_ 97.6 0.00026 5.5E-09 59.7 7.6 118 142-265 24-161 (180)
173 PRK05703 flhF flagellar biosyn 97.6 0.0054 1.2E-07 58.7 17.1 85 143-233 221-308 (424)
174 KOG0735 AAA+-type ATPase [Post 97.6 0.00048 1E-08 67.6 9.7 152 142-315 430-608 (952)
175 PF02562 PhoH: PhoH-like prote 97.6 0.00035 7.7E-09 59.5 8.0 128 127-262 5-156 (205)
176 cd01131 PilT Pilus retraction 97.6 0.00012 2.7E-09 62.7 5.2 112 144-267 2-114 (198)
177 PRK08699 DNA polymerase III su 97.5 0.0028 6E-08 58.5 14.0 88 223-319 112-203 (325)
178 PF13207 AAA_17: AAA domain; P 97.5 8E-05 1.7E-09 58.2 3.3 24 145-168 1-24 (121)
179 KOG0744 AAA+-type ATPase [Post 97.5 0.00061 1.3E-08 60.9 9.0 40 143-182 177-218 (423)
180 PRK14721 flhF flagellar biosyn 97.5 0.0055 1.2E-07 58.2 16.1 26 142-167 190-215 (420)
181 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00099 2.1E-08 58.7 10.4 93 142-235 18-126 (235)
182 KOG0741 AAA+-type ATPase [Post 97.5 0.0028 6E-08 60.5 13.5 158 143-327 538-717 (744)
183 PF07693 KAP_NTPase: KAP famil 97.5 0.0026 5.7E-08 58.9 13.6 42 129-170 3-47 (325)
184 PRK12726 flagellar biosynthesi 97.5 0.01 2.2E-07 55.3 16.9 87 142-234 205-295 (407)
185 PRK00771 signal recognition pa 97.5 0.0041 8.8E-08 59.6 14.8 57 142-200 94-151 (437)
186 KOG2228 Origin recognition com 97.5 0.0013 2.9E-08 59.2 10.6 170 122-293 24-220 (408)
187 PLN00020 ribulose bisphosphate 97.5 0.00083 1.8E-08 61.9 9.4 29 141-169 146-174 (413)
188 TIGR02639 ClpA ATP-dependent C 97.5 0.0015 3.3E-08 67.2 12.6 44 124-167 456-508 (731)
189 KOG0730 AAA+-type ATPase [Post 97.5 0.0016 3.6E-08 63.5 11.9 130 142-293 467-616 (693)
190 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.00017 3.6E-09 62.5 4.8 23 143-165 29-51 (213)
191 COG0470 HolB ATPase involved i 97.4 0.00094 2E-08 61.8 10.1 45 124-168 3-49 (325)
192 KOG0734 AAA+-type ATPase conta 97.4 0.00043 9.3E-09 65.8 7.6 85 128-235 313-407 (752)
193 COG4608 AppF ABC-type oligopep 97.4 0.00023 5E-09 62.5 5.5 123 141-270 37-178 (268)
194 PRK06995 flhF flagellar biosyn 97.4 0.0075 1.6E-07 58.3 16.0 59 142-200 255-314 (484)
195 COG1875 NYN ribonuclease and A 97.4 0.00046 9.9E-09 62.8 7.2 137 122-261 224-387 (436)
196 PRK04132 replication factor C 97.4 0.0034 7.4E-08 64.5 14.4 153 148-319 569-728 (846)
197 cd01133 F1-ATPase_beta F1 ATP 97.4 0.0019 4.2E-08 57.5 11.0 95 141-236 67-175 (274)
198 KOG0743 AAA+-type ATPase [Post 97.4 0.0077 1.7E-07 56.6 15.1 166 144-343 236-433 (457)
199 PRK09183 transposase/IS protei 97.4 0.00032 6.9E-09 62.7 5.9 28 142-169 101-128 (259)
200 PRK10733 hflB ATP-dependent me 97.4 0.0014 3E-08 66.3 11.2 148 143-314 185-355 (644)
201 PRK10867 signal recognition pa 97.4 0.0082 1.8E-07 57.4 15.4 28 142-169 99-126 (433)
202 PRK08939 primosomal protein Dn 97.4 0.00036 7.8E-09 63.8 5.9 116 126-261 135-260 (306)
203 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00057 1.2E-08 56.1 6.6 119 142-268 24-146 (157)
204 PRK06526 transposase; Provisio 97.3 0.00015 3.2E-09 64.5 3.3 28 142-169 97-124 (254)
205 KOG2035 Replication factor C, 97.3 0.0022 4.8E-08 56.2 10.2 211 118-344 9-261 (351)
206 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00034 7.3E-09 64.6 5.6 47 123-169 52-104 (361)
207 COG1116 TauB ABC-type nitrate/ 97.3 0.00023 4.9E-09 61.7 4.2 28 141-168 27-54 (248)
208 TIGR00959 ffh signal recogniti 97.3 0.0067 1.5E-07 57.9 14.5 27 142-168 98-124 (428)
209 PRK06696 uridine kinase; Valid 97.3 0.00035 7.7E-09 61.0 5.5 44 126-169 2-48 (223)
210 COG4618 ArpD ABC-type protease 97.3 0.00021 4.6E-09 67.6 4.2 26 142-167 361-386 (580)
211 COG0396 sufC Cysteine desulfur 97.3 0.00071 1.5E-08 57.8 6.9 55 218-272 156-214 (251)
212 COG1484 DnaC DNA replication p 97.3 0.0016 3.5E-08 57.9 9.7 76 142-236 104-179 (254)
213 PRK04296 thymidine kinase; Pro 97.3 0.00018 3.9E-09 61.2 3.4 110 144-263 3-117 (190)
214 cd03283 ABC_MutS-like MutS-lik 97.3 0.00035 7.6E-09 59.8 5.2 25 143-167 25-49 (199)
215 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0036 7.8E-08 65.6 13.6 46 123-168 566-620 (852)
216 cd03229 ABC_Class3 This class 97.3 0.00037 8E-09 58.6 5.1 28 141-168 24-51 (178)
217 PRK10865 protein disaggregatio 97.3 0.0015 3.2E-08 68.3 10.3 46 123-168 569-623 (857)
218 TIGR02858 spore_III_AA stage I 97.3 0.00051 1.1E-08 61.5 6.0 126 132-266 99-233 (270)
219 PRK09544 znuC high-affinity zi 97.3 0.00091 2E-08 59.6 7.6 28 141-168 28-55 (251)
220 cd03369 ABCC_NFT1 Domain 2 of 97.3 0.0016 3.5E-08 56.1 8.9 28 141-168 32-59 (207)
221 TIGR02237 recomb_radB DNA repa 97.3 0.0018 4E-08 55.9 9.2 89 142-234 11-107 (209)
222 TIGR02868 CydC thiol reductant 97.3 0.001 2.2E-08 66.1 8.5 29 141-169 359-387 (529)
223 cd03215 ABC_Carb_Monos_II This 97.3 0.0011 2.5E-08 55.9 7.6 27 142-168 25-51 (182)
224 PRK11889 flhF flagellar biosyn 97.3 0.0028 6.1E-08 59.2 10.6 28 142-169 240-267 (436)
225 COG0464 SpoVK ATPases of the A 97.2 0.0033 7.2E-08 61.9 11.7 130 142-293 275-424 (494)
226 KOG0729 26S proteasome regulat 97.2 0.0031 6.8E-08 55.0 10.0 86 126-234 181-280 (435)
227 PRK12723 flagellar biosynthesi 97.2 0.024 5.3E-07 53.4 16.8 88 142-234 173-264 (388)
228 PRK00409 recombination and DNA 97.2 0.00016 3.4E-09 74.4 2.4 178 142-343 326-527 (782)
229 cd03252 ABCC_Hemolysin The ABC 97.2 0.002 4.2E-08 56.9 9.1 28 141-168 26-53 (237)
230 COG0488 Uup ATPase components 97.2 0.0018 3.9E-08 63.5 9.5 131 141-277 346-510 (530)
231 COG0542 clpA ATP-binding subun 97.2 0.004 8.6E-08 63.0 12.0 158 119-292 167-346 (786)
232 TIGR01425 SRP54_euk signal rec 97.2 0.024 5.1E-07 54.0 16.6 27 143-169 100-126 (429)
233 cd03232 ABC_PDR_domain2 The pl 97.2 0.00056 1.2E-08 58.3 5.3 26 141-166 31-56 (192)
234 PRK14723 flhF flagellar biosyn 97.2 0.024 5.2E-07 57.7 17.4 26 143-168 185-210 (767)
235 PRK07952 DNA replication prote 97.2 0.0032 7E-08 55.5 9.9 89 130-236 84-174 (244)
236 COG0488 Uup ATPase components 97.2 0.002 4.3E-08 63.2 9.3 28 142-169 28-55 (530)
237 PRK10416 signal recognition pa 97.2 0.038 8.2E-07 50.9 17.1 29 142-170 113-141 (318)
238 TIGR02238 recomb_DMC1 meiotic 97.2 0.0031 6.7E-08 57.9 9.9 92 142-234 95-201 (313)
239 PRK05541 adenylylsulfate kinas 97.2 0.0018 3.8E-08 54.3 7.8 36 142-179 6-41 (176)
240 PRK12377 putative replication 97.2 0.0015 3.2E-08 57.8 7.5 74 143-235 101-174 (248)
241 cd01393 recA_like RecA is a b 97.2 0.0045 9.8E-08 54.1 10.7 93 142-235 18-125 (226)
242 COG4555 NatA ABC-type Na+ tran 97.2 0.0013 2.8E-08 55.1 6.6 32 139-170 24-55 (245)
243 COG0563 Adk Adenylate kinase a 97.2 0.0008 1.7E-08 56.4 5.5 24 145-168 2-25 (178)
244 COG1131 CcmA ABC-type multidru 97.2 0.002 4.4E-08 58.6 8.6 28 142-169 30-57 (293)
245 KOG0735 AAA+-type ATPase [Post 97.2 0.019 4.2E-07 56.8 15.4 151 144-318 702-872 (952)
246 PTZ00035 Rad51 protein; Provis 97.2 0.0064 1.4E-07 56.4 11.9 93 142-235 117-224 (337)
247 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0011 2.4E-08 56.6 6.3 27 141-167 33-59 (194)
248 PRK09361 radB DNA repair and r 97.1 0.0031 6.7E-08 55.2 9.4 89 142-234 22-117 (225)
249 cd01394 radB RadB. The archaea 97.1 0.0043 9.3E-08 53.9 10.1 89 142-234 18-113 (218)
250 PRK15455 PrkA family serine pr 97.1 0.00078 1.7E-08 65.6 5.7 52 118-169 72-129 (644)
251 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.00031 6.8E-09 60.3 2.8 118 142-269 28-158 (204)
252 KOG2004 Mitochondrial ATP-depe 97.1 0.0014 3.1E-08 64.5 7.5 156 123-292 412-596 (906)
253 COG0542 clpA ATP-binding subun 97.1 0.0017 3.7E-08 65.6 8.2 105 122-236 491-605 (786)
254 COG2274 SunT ABC-type bacterio 97.1 0.0019 4E-08 65.6 8.6 30 140-169 496-525 (709)
255 TIGR03522 GldA_ABC_ATP gliding 97.1 0.0026 5.6E-08 58.3 8.9 28 141-168 26-53 (301)
256 cd03243 ABC_MutS_homologs The 97.1 0.00026 5.7E-09 60.8 2.2 24 143-166 29-52 (202)
257 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.0013 2.8E-08 56.5 6.4 26 141-166 24-49 (200)
258 cd03254 ABCC_Glucan_exporter_l 97.1 0.0024 5.2E-08 56.0 8.3 28 141-168 27-54 (229)
259 cd03250 ABCC_MRP_domain1 Domai 97.1 0.0047 1E-07 53.1 9.9 29 141-169 29-57 (204)
260 COG1618 Predicted nucleotide k 97.1 0.00077 1.7E-08 54.3 4.4 29 143-171 5-33 (179)
261 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.00051 1.1E-08 58.9 3.7 21 144-164 29-49 (200)
262 PRK06547 hypothetical protein; 97.1 0.00086 1.9E-08 55.9 4.9 35 134-168 6-40 (172)
263 PF08423 Rad51: Rad51; InterP 97.1 0.0041 8.9E-08 55.4 9.5 92 142-234 37-143 (256)
264 PRK09270 nucleoside triphospha 97.1 0.00098 2.1E-08 58.5 5.4 30 141-170 31-60 (229)
265 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0044 9.4E-08 57.0 9.7 92 142-234 95-201 (316)
266 PF00485 PRK: Phosphoribulokin 97.0 0.00057 1.2E-08 58.3 3.7 26 145-170 1-26 (194)
267 KOG1514 Origin recognition com 97.0 0.025 5.4E-07 56.0 15.0 166 124-293 398-590 (767)
268 cd01120 RecA-like_NTPases RecA 97.0 0.0051 1.1E-07 50.3 9.3 39 145-185 1-39 (165)
269 TIGR01817 nifA Nif-specific re 97.0 0.048 1E-06 54.3 17.7 48 121-168 195-244 (534)
270 PF00006 ATP-synt_ab: ATP synt 97.0 0.0037 8E-08 54.0 8.5 89 141-234 13-115 (215)
271 TIGR01420 pilT_fam pilus retra 97.0 0.0015 3.3E-08 60.9 6.7 113 142-266 121-234 (343)
272 smart00534 MUTSac ATPase domai 97.0 0.00026 5.7E-09 59.9 1.4 21 145-165 1-21 (185)
273 PLN03187 meiotic recombination 97.0 0.0054 1.2E-07 56.8 10.1 92 142-234 125-231 (344)
274 TIGR03375 type_I_sec_LssB type 97.0 0.003 6.4E-08 65.0 9.3 29 141-169 489-517 (694)
275 cd03227 ABC_Class2 ABC-type Cl 97.0 0.002 4.4E-08 53.2 6.6 22 144-165 22-43 (162)
276 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.004 8.6E-08 50.9 8.1 116 144-262 3-138 (159)
277 COG1119 ModF ABC-type molybden 97.0 0.0031 6.7E-08 54.5 7.7 26 143-168 57-82 (257)
278 TIGR00235 udk uridine kinase. 97.0 0.00061 1.3E-08 58.8 3.5 28 141-168 4-31 (207)
279 PRK05480 uridine/cytidine kina 97.0 0.00064 1.4E-08 58.7 3.6 27 141-167 4-30 (209)
280 KOG0736 Peroxisome assembly fa 97.0 0.0045 9.6E-08 61.6 9.6 92 122-235 672-775 (953)
281 cd01135 V_A-ATPase_B V/A-type 97.0 0.0091 2E-07 53.2 10.8 96 141-236 67-178 (276)
282 cd00983 recA RecA is a bacter 97.0 0.0032 7E-08 57.7 8.2 83 142-234 54-143 (325)
283 KOG1969 DNA replication checkp 97.0 0.0016 3.5E-08 64.3 6.5 75 140-236 323-399 (877)
284 PRK12597 F0F1 ATP synthase sub 97.0 0.0058 1.3E-07 58.7 10.2 93 141-234 141-247 (461)
285 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.0036 7.8E-08 52.7 8.0 24 145-168 1-24 (183)
286 cd03115 SRP The signal recogni 97.0 0.0022 4.7E-08 53.6 6.6 26 145-170 2-27 (173)
287 COG0465 HflB ATP-dependent Zn 97.0 0.0094 2E-07 58.7 11.7 200 121-344 149-393 (596)
288 PRK11174 cysteine/glutathione 97.0 0.0022 4.7E-08 64.6 7.8 27 141-167 374-400 (588)
289 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.00056 1.2E-08 59.6 3.0 171 142-327 29-218 (222)
290 COG3910 Predicted ATPase [Gene 97.0 0.0045 9.7E-08 51.3 7.9 25 142-166 36-60 (233)
291 KOG0739 AAA+-type ATPase [Post 97.0 0.0077 1.7E-07 53.5 9.8 170 123-316 134-335 (439)
292 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.00097 2.1E-08 58.0 4.4 24 142-165 30-53 (222)
293 COG1117 PstB ABC-type phosphat 96.9 0.0044 9.6E-08 52.5 7.9 28 141-168 31-58 (253)
294 PRK08972 fliI flagellum-specif 96.9 0.0042 9.1E-08 59.0 8.8 90 141-235 160-263 (444)
295 COG1419 FlhF Flagellar GTP-bin 96.9 0.0087 1.9E-07 55.8 10.6 101 128-233 184-290 (407)
296 KOG0652 26S proteasome regulat 96.9 0.2 4.4E-06 43.9 18.1 47 122-168 171-230 (424)
297 TIGR00554 panK_bact pantothena 96.9 0.003 6.4E-08 57.1 7.4 28 141-168 60-87 (290)
298 TIGR02857 CydD thiol reductant 96.9 0.0029 6.4E-08 62.8 8.1 28 141-168 346-373 (529)
299 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0033 7.2E-08 65.5 8.7 46 123-168 567-621 (852)
300 PRK15064 ABC transporter ATP-b 96.9 0.0063 1.4E-07 60.5 10.3 28 141-168 25-52 (530)
301 COG2607 Predicted ATPase (AAA+ 96.9 0.0063 1.4E-07 52.4 8.7 51 120-170 58-112 (287)
302 COG4181 Predicted ABC-type tra 96.9 0.0057 1.2E-07 50.0 7.9 126 142-271 35-216 (228)
303 PRK15429 formate hydrogenlyase 96.9 0.076 1.7E-06 54.5 18.3 47 122-168 376-424 (686)
304 PRK11034 clpA ATP-dependent Cl 96.9 0.0031 6.8E-08 64.6 8.1 45 124-168 460-513 (758)
305 TIGR03258 PhnT 2-aminoethylpho 96.9 0.0035 7.7E-08 58.8 7.8 28 142-169 30-57 (362)
306 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0028 6.2E-08 56.7 6.8 122 129-266 67-188 (264)
307 PRK14974 cell division protein 96.9 0.0097 2.1E-07 55.0 10.4 57 142-201 139-197 (336)
308 PF13238 AAA_18: AAA domain; P 96.9 0.00085 1.8E-08 52.8 3.1 22 146-167 1-22 (129)
309 PHA00729 NTP-binding motif con 96.9 0.0015 3.3E-08 56.4 4.7 36 133-168 7-42 (226)
310 TIGR02012 tigrfam_recA protein 96.9 0.0053 1.1E-07 56.2 8.4 84 142-235 54-144 (321)
311 PRK08533 flagellar accessory p 96.9 0.011 2.3E-07 52.0 10.1 53 142-199 23-75 (230)
312 PRK08233 hypothetical protein; 96.9 0.00094 2E-08 56.2 3.4 26 143-168 3-28 (182)
313 TIGR01192 chvA glucan exporter 96.9 0.0033 7.2E-08 63.2 7.8 28 141-168 359-386 (585)
314 PRK07132 DNA polymerase III su 96.8 0.06 1.3E-06 49.0 15.2 142 131-291 5-161 (299)
315 cd02027 APSK Adenosine 5'-phos 96.8 0.01 2.2E-07 48.3 9.2 25 145-169 1-25 (149)
316 TIGR00708 cobA cob(I)alamin ad 96.8 0.0065 1.4E-07 50.3 8.1 117 143-262 5-140 (173)
317 PTZ00301 uridine kinase; Provi 96.8 0.00095 2.1E-08 57.5 3.3 25 144-168 4-28 (210)
318 cd02019 NK Nucleoside/nucleoti 96.8 0.001 2.2E-08 46.3 2.9 23 145-167 1-23 (69)
319 PF07728 AAA_5: AAA domain (dy 96.8 0.0029 6.3E-08 50.7 6.0 41 146-191 2-42 (139)
320 PRK07667 uridine kinase; Provi 96.8 0.0019 4.1E-08 55.1 5.1 38 132-169 4-43 (193)
321 PRK11176 lipid transporter ATP 96.8 0.0046 9.9E-08 62.2 8.6 29 141-169 367-395 (582)
322 CHL00095 clpC Clp protease ATP 96.8 0.005 1.1E-07 64.3 9.0 46 123-168 510-564 (821)
323 PF13671 AAA_33: AAA domain; P 96.8 0.001 2.3E-08 53.5 3.2 24 145-168 1-24 (143)
324 PRK12724 flagellar biosynthesi 96.8 0.0056 1.2E-07 57.8 8.4 25 143-167 223-247 (432)
325 PRK06921 hypothetical protein; 96.8 0.0046 1E-07 55.4 7.6 38 142-180 116-153 (266)
326 TIGR02974 phageshock_pspF psp 96.8 0.016 3.4E-07 53.8 11.4 44 125-168 2-47 (329)
327 COG2401 ABC-type ATPase fused 96.8 0.0049 1.1E-07 57.3 7.7 146 126-274 375-580 (593)
328 PRK11608 pspF phage shock prot 96.8 0.018 3.9E-07 53.3 11.7 46 122-167 6-53 (326)
329 PRK13409 putative ATPase RIL; 96.8 0.0058 1.3E-07 61.3 9.0 28 141-168 97-124 (590)
330 PRK13657 cyclic beta-1,2-gluca 96.8 0.004 8.6E-08 62.8 7.8 28 141-168 359-386 (588)
331 TIGR03796 NHPM_micro_ABC1 NHPM 96.8 0.0067 1.5E-07 62.6 9.6 28 141-168 503-530 (710)
332 TIGR02203 MsbA_lipidA lipid A 96.8 0.0041 8.9E-08 62.4 7.7 28 141-168 356-383 (571)
333 PF03308 ArgK: ArgK protein; 96.8 0.0037 7.9E-08 54.8 6.3 57 130-186 14-72 (266)
334 PRK12678 transcription termina 96.8 0.0044 9.5E-08 60.3 7.4 88 141-235 414-514 (672)
335 COG0541 Ffh Signal recognition 96.8 0.21 4.5E-06 47.1 18.0 58 142-200 99-156 (451)
336 PRK06762 hypothetical protein; 96.8 0.0013 2.8E-08 54.6 3.4 25 143-167 2-26 (166)
337 PRK09354 recA recombinase A; P 96.8 0.0078 1.7E-07 55.6 8.8 84 142-235 59-149 (349)
338 COG1066 Sms Predicted ATP-depe 96.7 0.0056 1.2E-07 56.8 7.7 95 132-235 80-179 (456)
339 PLN03186 DNA repair protein RA 96.7 0.011 2.3E-07 54.9 9.7 93 142-235 122-229 (342)
340 cd02025 PanK Pantothenate kina 96.7 0.0028 6E-08 55.2 5.6 25 145-169 1-25 (220)
341 COG4088 Predicted nucleotide k 96.7 0.002 4.3E-08 54.1 4.3 130 144-292 2-139 (261)
342 PRK13409 putative ATPase RIL; 96.7 0.0064 1.4E-07 61.0 8.7 28 141-168 363-390 (590)
343 COG1703 ArgK Putative periplas 96.7 0.0032 7E-08 56.0 5.8 60 132-191 38-99 (323)
344 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.0018 3.8E-08 56.3 4.1 22 144-165 31-52 (216)
345 PRK10789 putative multidrug tr 96.7 0.0065 1.4E-07 60.9 8.8 28 141-168 339-366 (569)
346 TIGR02236 recomb_radA DNA repa 96.7 0.012 2.6E-07 54.1 9.8 57 142-199 94-154 (310)
347 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.3E-08 55.2 3.5 25 143-167 3-27 (188)
348 PRK11160 cysteine/glutathione 96.7 0.0061 1.3E-07 61.2 8.2 28 141-168 364-391 (574)
349 PTZ00088 adenylate kinase 1; P 96.7 0.0018 3.9E-08 56.6 3.8 25 144-168 7-31 (229)
350 TIGR00150 HI0065_YjeE ATPase, 96.7 0.004 8.6E-08 49.3 5.4 41 129-169 6-48 (133)
351 PRK15064 ABC transporter ATP-b 96.7 0.011 2.5E-07 58.6 10.0 28 141-168 343-370 (530)
352 PF03215 Rad17: Rad17 cell cyc 96.7 0.0028 6E-08 62.1 5.5 59 118-180 15-78 (519)
353 PRK08149 ATP synthase SpaL; Va 96.7 0.014 3E-07 55.6 9.9 90 141-235 149-252 (428)
354 KOG0728 26S proteasome regulat 96.6 0.069 1.5E-06 46.4 13.0 146 142-310 180-351 (404)
355 PRK13531 regulatory ATPase Rav 96.6 0.0034 7.4E-08 60.3 5.8 51 122-174 20-70 (498)
356 PRK04301 radA DNA repair and r 96.6 0.019 4.1E-07 53.0 10.6 57 142-199 101-161 (317)
357 PF08433 KTI12: Chromatin asso 96.6 0.0046 9.9E-08 55.5 6.3 26 144-169 2-27 (270)
358 TIGR00954 3a01203 Peroxysomal 96.6 0.01 2.2E-07 60.5 9.6 28 141-168 476-503 (659)
359 KOG0927 Predicted transporter 96.6 0.0073 1.6E-07 57.9 7.8 27 142-168 100-126 (614)
360 PRK08927 fliI flagellum-specif 96.6 0.019 4E-07 54.9 10.6 89 142-235 157-259 (442)
361 COG3840 ThiQ ABC-type thiamine 96.6 0.014 3E-07 48.3 8.3 27 142-168 24-50 (231)
362 PRK03839 putative kinase; Prov 96.6 0.0017 3.7E-08 54.6 3.3 24 145-168 2-25 (180)
363 COG0572 Udk Uridine kinase [Nu 96.6 0.0018 3.8E-08 55.4 3.3 28 142-169 7-34 (218)
364 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.032 7E-07 49.2 11.5 48 142-193 20-67 (237)
365 PF13245 AAA_19: Part of AAA d 96.6 0.0066 1.4E-07 43.0 5.8 26 142-167 9-35 (76)
366 cd02023 UMPK Uridine monophosp 96.6 0.0014 3E-08 56.1 2.8 23 145-167 1-23 (198)
367 TIGR00958 3a01208 Conjugate Tr 96.6 0.015 3.3E-07 59.9 10.7 29 141-169 505-533 (711)
368 TIGR01846 type_I_sec_HlyB type 96.6 0.0096 2.1E-07 61.2 9.2 28 141-168 481-508 (694)
369 COG1124 DppF ABC-type dipeptid 96.6 0.0027 5.9E-08 54.8 4.3 28 141-168 31-58 (252)
370 TIGR02322 phosphon_PhnN phosph 96.6 0.0019 4.1E-08 54.3 3.4 25 144-168 2-26 (179)
371 TIGR01193 bacteriocin_ABC ABC- 96.6 0.009 2E-07 61.6 9.0 28 141-168 498-525 (708)
372 cd01136 ATPase_flagellum-secre 96.6 0.018 3.9E-07 52.9 9.9 90 141-235 67-170 (326)
373 PRK06002 fliI flagellum-specif 96.6 0.0089 1.9E-07 57.1 8.1 91 141-235 163-265 (450)
374 COG3854 SpoIIIAA ncharacterize 96.6 0.014 3.1E-07 50.0 8.4 126 134-268 128-259 (308)
375 PRK13765 ATP-dependent proteas 96.6 0.0049 1.1E-07 61.8 6.6 84 112-199 20-104 (637)
376 TIGR01039 atpD ATP synthase, F 96.6 0.019 4.2E-07 54.9 10.3 94 141-235 141-248 (461)
377 KOG1970 Checkpoint RAD17-RFC c 96.6 0.0088 1.9E-07 57.5 7.8 42 127-168 87-135 (634)
378 TIGR03305 alt_F1F0_F1_bet alte 96.6 0.016 3.4E-07 55.5 9.6 94 141-235 136-243 (449)
379 TIGR00064 ftsY signal recognit 96.6 0.015 3.3E-07 52.3 9.1 38 142-181 71-108 (272)
380 PF01583 APS_kinase: Adenylyls 96.5 0.0035 7.5E-08 51.0 4.4 35 143-179 2-36 (156)
381 TIGR01041 ATP_syn_B_arch ATP s 96.5 0.0095 2.1E-07 57.2 8.1 95 141-235 139-249 (458)
382 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.028 6.2E-07 49.2 10.7 40 142-183 19-58 (229)
383 PF10236 DAP3: Mitochondrial r 96.5 0.14 3E-06 47.1 15.4 47 273-319 258-306 (309)
384 TIGR02902 spore_lonB ATP-depen 96.5 0.0029 6.3E-08 62.5 4.8 50 118-167 61-110 (531)
385 COG1123 ATPase components of v 96.5 0.0053 1.1E-07 59.6 6.4 125 141-269 33-222 (539)
386 PF00910 RNA_helicase: RNA hel 96.5 0.0017 3.8E-08 49.5 2.6 24 146-169 1-24 (107)
387 cd01132 F1_ATPase_alpha F1 ATP 96.5 0.016 3.5E-07 51.6 8.9 96 142-242 68-180 (274)
388 PRK05342 clpX ATP-dependent pr 96.5 0.0099 2.1E-07 56.7 8.1 45 124-168 73-133 (412)
389 PRK06936 type III secretion sy 96.5 0.019 4.1E-07 54.8 9.9 90 141-235 160-263 (439)
390 PF03205 MobB: Molybdopterin g 96.5 0.0026 5.7E-08 51.1 3.6 39 144-183 1-39 (140)
391 PRK06835 DNA replication prote 96.5 0.017 3.7E-07 53.4 9.4 37 143-181 183-219 (329)
392 TIGR03263 guanyl_kin guanylate 96.5 0.0021 4.5E-08 54.0 3.2 24 144-167 2-25 (180)
393 PRK10522 multidrug transporter 96.5 0.0042 9.2E-08 62.0 5.8 28 141-168 347-374 (547)
394 PRK09280 F0F1 ATP synthase sub 96.5 0.019 4.2E-07 55.0 9.9 94 141-235 142-249 (463)
395 PRK00300 gmk guanylate kinase; 96.5 0.0024 5.2E-08 54.9 3.6 27 142-168 4-30 (205)
396 PRK10463 hydrogenase nickel in 96.5 0.0057 1.2E-07 55.0 6.0 37 133-169 94-130 (290)
397 PRK05922 type III secretion sy 96.5 0.022 4.7E-07 54.4 10.1 90 141-235 155-258 (434)
398 PRK10751 molybdopterin-guanine 96.5 0.0029 6.4E-08 52.5 3.9 29 142-170 5-33 (173)
399 PF12775 AAA_7: P-loop contain 96.5 0.0045 9.8E-08 55.7 5.4 37 132-169 23-59 (272)
400 KOG0058 Peptide exporter, ABC 96.5 0.0038 8.3E-08 61.9 5.2 28 141-168 492-519 (716)
401 COG1127 Ttg2A ABC-type transpo 96.5 0.0099 2.2E-07 51.3 7.0 29 141-169 32-60 (263)
402 KOG0066 eIF2-interacting prote 96.5 0.0039 8.4E-08 58.2 4.9 27 143-169 613-639 (807)
403 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0025 5.4E-08 48.3 3.1 23 142-164 14-36 (107)
404 PRK00131 aroK shikimate kinase 96.5 0.0027 5.8E-08 52.9 3.7 26 143-168 4-29 (175)
405 PRK03846 adenylylsulfate kinas 96.5 0.016 3.4E-07 49.6 8.5 29 141-169 22-50 (198)
406 PF13481 AAA_25: AAA domain; P 96.5 0.013 2.8E-07 49.8 7.9 42 143-184 32-81 (193)
407 PRK10790 putative multidrug tr 96.5 0.0079 1.7E-07 60.7 7.6 29 141-169 365-393 (592)
408 COG4988 CydD ABC-type transpor 96.5 0.0066 1.4E-07 58.8 6.6 27 142-168 346-372 (559)
409 PRK04040 adenylate kinase; Pro 96.5 0.0025 5.4E-08 54.0 3.4 26 143-168 2-27 (188)
410 TIGR01040 V-ATPase_V1_B V-type 96.5 0.023 5E-07 54.3 10.0 95 141-235 139-258 (466)
411 PF00005 ABC_tran: ABC transpo 96.5 0.0024 5.3E-08 50.9 3.1 28 142-169 10-37 (137)
412 PRK05986 cob(I)alamin adenolsy 96.5 0.015 3.3E-07 48.9 7.8 120 142-262 21-158 (191)
413 PLN03211 ABC transporter G-25; 96.4 0.047 1E-06 55.6 12.9 27 142-168 93-119 (659)
414 PF00625 Guanylate_kin: Guanyl 96.4 0.0051 1.1E-07 51.9 5.1 36 143-180 2-37 (183)
415 TIGR03498 FliI_clade3 flagella 96.4 0.017 3.8E-07 54.9 9.1 91 141-235 138-241 (418)
416 TIGR03496 FliI_clade1 flagella 96.4 0.018 4E-07 54.7 9.1 90 141-235 135-238 (411)
417 COG1102 Cmk Cytidylate kinase 96.4 0.0026 5.6E-08 51.3 2.8 44 145-201 2-45 (179)
418 CHL00060 atpB ATP synthase CF1 96.4 0.02 4.3E-07 55.2 9.3 94 141-235 159-273 (494)
419 PRK10078 ribose 1,5-bisphospho 96.4 0.0027 5.9E-08 53.8 3.2 25 144-168 3-27 (186)
420 PRK07196 fliI flagellum-specif 96.4 0.011 2.4E-07 56.3 7.5 90 141-235 153-256 (434)
421 cd00227 CPT Chloramphenicol (C 96.4 0.0032 7E-08 52.7 3.5 26 143-168 2-27 (175)
422 TIGR02030 BchI-ChlI magnesium 96.4 0.0061 1.3E-07 56.5 5.6 48 121-168 3-50 (337)
423 KOG0727 26S proteasome regulat 96.4 0.018 4E-07 49.9 8.0 73 141-235 187-259 (408)
424 TIGR00390 hslU ATP-dependent p 96.4 0.012 2.5E-07 55.6 7.4 46 124-169 14-73 (441)
425 PRK06067 flagellar accessory p 96.4 0.022 4.8E-07 50.1 8.8 49 142-194 24-72 (234)
426 PRK05688 fliI flagellum-specif 96.4 0.033 7.1E-07 53.3 10.4 90 141-235 166-269 (451)
427 PRK00889 adenylylsulfate kinas 96.4 0.0037 8E-08 52.3 3.7 28 142-169 3-30 (175)
428 PRK06217 hypothetical protein; 96.4 0.0028 6.1E-08 53.5 3.0 24 145-168 3-26 (183)
429 PRK14527 adenylate kinase; Pro 96.4 0.0033 7.1E-08 53.5 3.4 28 141-168 4-31 (191)
430 TIGR00764 lon_rel lon-related 96.3 0.015 3.2E-07 58.5 8.5 84 112-199 7-91 (608)
431 cd02024 NRK1 Nicotinamide ribo 96.3 0.0027 5.8E-08 53.6 2.8 23 145-167 1-23 (187)
432 PRK07594 type III secretion sy 96.3 0.019 4.1E-07 54.8 8.7 90 141-235 153-256 (433)
433 KOG0737 AAA+-type ATPase [Post 96.3 0.081 1.8E-06 48.6 12.2 49 121-169 91-153 (386)
434 TIGR03575 selen_PSTK_euk L-ser 96.3 0.037 8.1E-07 51.2 10.3 24 146-169 2-25 (340)
435 PRK00625 shikimate kinase; Pro 96.3 0.0032 6.9E-08 52.6 3.1 24 145-168 2-25 (173)
436 cd01121 Sms Sms (bacterial rad 96.3 0.01 2.2E-07 55.8 6.7 86 142-235 81-169 (372)
437 CHL00206 ycf2 Ycf2; Provisiona 96.3 0.021 4.6E-07 62.8 9.8 28 142-169 1629-1656(2281)
438 PF00154 RecA: recA bacterial 96.3 0.033 7.2E-07 51.0 9.8 85 142-236 52-143 (322)
439 cd02028 UMPK_like Uridine mono 96.3 0.0031 6.7E-08 53.0 3.0 25 145-169 1-25 (179)
440 COG0468 RecA RecA/RadA recombi 96.3 0.045 9.8E-07 49.1 10.4 91 142-235 59-152 (279)
441 PRK05022 anaerobic nitric oxid 96.3 0.073 1.6E-06 52.6 13.0 48 121-168 186-235 (509)
442 KOG0738 AAA+-type ATPase [Post 96.3 0.034 7.4E-07 51.3 9.6 27 143-169 245-271 (491)
443 cd02021 GntK Gluconate kinase 96.3 0.003 6.6E-08 51.3 2.8 23 145-167 1-23 (150)
444 cd02020 CMPK Cytidine monophos 96.3 0.0032 7E-08 50.8 2.9 24 145-168 1-24 (147)
445 cd00071 GMPK Guanosine monopho 96.3 0.0031 6.7E-08 50.5 2.7 24 145-168 1-24 (137)
446 PRK09435 membrane ATPase/prote 96.3 0.051 1.1E-06 50.2 10.9 40 131-170 42-83 (332)
447 TIGR01194 cyc_pep_trnsptr cycl 96.3 0.0089 1.9E-07 59.7 6.5 28 141-168 366-393 (555)
448 KOG1532 GTPase XAB1, interacts 96.3 0.0052 1.1E-07 53.8 4.1 30 142-171 18-47 (366)
449 PRK14530 adenylate kinase; Pro 96.3 0.0038 8.2E-08 54.2 3.4 25 144-168 4-28 (215)
450 CHL00081 chlI Mg-protoporyphyr 96.3 0.0052 1.1E-07 57.0 4.4 50 120-169 15-64 (350)
451 PTZ00185 ATPase alpha subunit; 96.3 0.05 1.1E-06 52.6 10.9 93 142-235 188-300 (574)
452 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0082 1.8E-07 56.2 5.7 121 134-264 126-249 (358)
453 PRK09825 idnK D-gluconate kina 96.2 0.0044 9.6E-08 51.9 3.5 27 143-169 3-29 (176)
454 TIGR01166 cbiO cobalt transpor 96.2 0.0041 8.8E-08 52.8 3.4 28 141-168 16-43 (190)
455 cd01125 repA Hexameric Replica 96.2 0.017 3.7E-07 51.0 7.4 24 145-168 3-26 (239)
456 PRK09099 type III secretion sy 96.2 0.016 3.5E-07 55.4 7.7 91 141-235 161-264 (441)
457 PRK04196 V-type ATP synthase s 96.2 0.031 6.8E-07 53.9 9.6 94 141-235 141-251 (460)
458 TIGR02788 VirB11 P-type DNA tr 96.2 0.0076 1.6E-07 55.4 5.3 112 142-265 143-256 (308)
459 PRK06793 fliI flagellum-specif 96.2 0.031 6.8E-07 53.3 9.5 122 141-268 154-292 (432)
460 TIGR01842 type_I_sec_PrtD type 96.2 0.013 2.9E-07 58.4 7.5 28 141-168 342-369 (544)
461 TIGR01313 therm_gnt_kin carboh 96.2 0.0031 6.7E-08 52.1 2.5 23 146-168 1-23 (163)
462 PF03193 DUF258: Protein of un 96.2 0.0073 1.6E-07 49.4 4.6 37 129-168 24-60 (161)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.0041 9E-08 54.0 3.4 28 141-168 28-55 (218)
464 PRK13407 bchI magnesium chelat 96.2 0.0069 1.5E-07 56.0 4.9 50 118-167 4-53 (334)
465 PRK13949 shikimate kinase; Pro 96.2 0.0043 9.3E-08 51.6 3.3 25 144-168 2-26 (169)
466 COG0194 Gmk Guanylate kinase [ 96.2 0.0047 1E-07 51.2 3.4 25 143-167 4-28 (191)
467 PRK14737 gmk guanylate kinase; 96.2 0.0044 9.5E-08 52.4 3.3 26 142-167 3-28 (186)
468 PF13086 AAA_11: AAA domain; P 96.2 0.0081 1.8E-07 52.4 5.2 52 145-196 19-75 (236)
469 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0043 9.4E-08 53.6 3.4 28 141-168 25-52 (211)
470 TIGR00960 3a0501s02 Type II (G 96.2 0.0043 9.3E-08 53.9 3.4 28 141-168 27-54 (216)
471 COG4586 ABC-type uncharacteriz 96.2 0.01 2.2E-07 52.2 5.5 28 141-168 48-75 (325)
472 COG4136 ABC-type uncharacteriz 96.2 0.0083 1.8E-07 47.9 4.5 40 142-181 27-66 (213)
473 PF03266 NTPase_1: NTPase; In 96.2 0.0079 1.7E-07 49.9 4.7 24 146-169 2-25 (168)
474 PF13555 AAA_29: P-loop contai 96.2 0.0056 1.2E-07 41.2 3.1 23 144-166 24-46 (62)
475 COG4619 ABC-type uncharacteriz 96.2 0.0049 1.1E-07 50.2 3.3 28 142-169 28-55 (223)
476 PF05970 PIF1: PIF1-like helic 96.2 0.012 2.6E-07 55.4 6.5 42 128-169 7-48 (364)
477 PRK05439 pantothenate kinase; 96.2 0.021 4.6E-07 52.1 7.8 28 141-168 84-111 (311)
478 TIGR02204 MsbA_rel ABC transpo 96.2 0.019 4.1E-07 57.7 8.2 29 141-169 364-392 (576)
479 TIGR00455 apsK adenylylsulfate 96.2 0.041 9E-07 46.4 9.1 29 141-169 16-44 (184)
480 PRK00279 adk adenylate kinase; 96.1 0.033 7.3E-07 48.3 8.7 24 145-168 2-25 (215)
481 TIGR00073 hypB hydrogenase acc 96.1 0.0064 1.4E-07 52.4 4.1 32 137-168 16-47 (207)
482 PRK14738 gmk guanylate kinase; 96.1 0.005 1.1E-07 53.1 3.4 25 142-166 12-36 (206)
483 COG3839 MalK ABC-type sugar tr 96.1 0.0049 1.1E-07 56.6 3.4 29 141-169 27-55 (338)
484 cd03269 ABC_putative_ATPase Th 96.1 0.0051 1.1E-07 53.1 3.4 27 142-168 25-51 (210)
485 PRK15177 Vi polysaccharide exp 96.1 0.0051 1.1E-07 53.3 3.3 28 141-168 11-38 (213)
486 PRK04328 hypothetical protein; 96.1 0.031 6.7E-07 49.7 8.4 40 142-183 22-61 (249)
487 PF07726 AAA_3: ATPase family 96.1 0.0049 1.1E-07 48.1 2.8 23 146-168 2-24 (131)
488 KOG3347 Predicted nucleotide k 96.1 0.0052 1.1E-07 48.8 3.0 26 143-168 7-32 (176)
489 PF08477 Miro: Miro-like prote 96.1 0.005 1.1E-07 47.6 3.0 25 145-169 1-25 (119)
490 COG3842 PotA ABC-type spermidi 96.1 0.0044 9.6E-08 57.2 3.0 27 142-168 30-56 (352)
491 cd03261 ABC_Org_Solvent_Resist 96.1 0.0051 1.1E-07 54.2 3.4 28 141-168 24-51 (235)
492 PRK14529 adenylate kinase; Pro 96.1 0.015 3.1E-07 50.6 6.0 25 145-169 2-26 (223)
493 cd03226 ABC_cobalt_CbiO_domain 96.1 0.0053 1.2E-07 52.8 3.3 28 141-168 24-51 (205)
494 PRK07276 DNA polymerase III su 96.1 0.26 5.6E-06 44.7 14.1 140 128-289 8-172 (290)
495 TIGR02673 FtsE cell division A 96.1 0.0054 1.2E-07 53.1 3.4 28 141-168 26-53 (214)
496 cd00544 CobU Adenosylcobinamid 96.1 0.031 6.8E-07 46.4 7.7 38 145-187 1-38 (169)
497 cd03286 ABC_MSH6_euk MutS6 hom 96.1 0.0036 7.9E-08 54.3 2.2 25 142-166 29-53 (218)
498 PHA02774 E1; Provisional 96.1 0.016 3.4E-07 56.7 6.7 49 129-181 419-468 (613)
499 PRK05057 aroK shikimate kinase 96.1 0.0061 1.3E-07 50.9 3.5 26 143-168 4-29 (172)
500 cd03263 ABC_subfamily_A The AB 96.1 0.0055 1.2E-07 53.3 3.4 28 141-168 26-53 (220)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-50 Score=403.56 Aligned_cols=348 Identities=29% Similarity=0.446 Sum_probs=280.3
Q ss_pred HHHHHHHHHHHHHhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHH
Q 038205 8 ASKLGELLVDATIKQARYLFCFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAIVVEKDVEKWLADVVKEMADVRTL 87 (375)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~~~Wl~~l~~~~~d~ed~ 87 (375)
++..++++.+.+..+...+ .+.++.+..|+..|..+++++++++.++. ....+..|.+.++++.|++++.
T Consensus 5 ~s~~~~~~~~~l~~~~~~~-------~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~---~~~~~~~~~e~~~~~~~~~e~~ 74 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECL-------DGKDNYILELKENLKALQSALEDLDAKRD---DLERRVNWEEDVGDLVYLAEDI 74 (889)
T ss_pred EEEehhhHHHHHHHHHHHH-------hchHHHHHHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666665553 34446788889999999999999998765 7788999999999999999998
Q ss_pred HHHHhhh------------------ccccCCCC-CCcchhccccccc------------------------c------CC
Q 038205 88 KAKIDKK------------------KSCFNGWY-PNWRFRYWMDKEM------------------------P------IP 118 (375)
Q Consensus 88 ~d~~~~~------------------~~~~~~~~-~~~~~r~~~~~~~------------------------~------~~ 118 (375)
++.+... +.|+.+.+ .....-+.+++++ + .|
T Consensus 75 ~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~ 154 (889)
T KOG4658|consen 75 IWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRP 154 (889)
T ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCC
Confidence 7655311 11221111 1111112222222 0 01
Q ss_pred CCC-CCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh-hcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 119 RFF-SSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR-QNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 119 ~~~-~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
... .. +|.+..++++.+.|..++.++++|+||||+||||||+.++|+.. +.++|+.++||+||+.++...++.+|+.
T Consensus 155 ~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 155 IQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred CCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 111 12 89999999999999988889999999999999999999999998 8999999999999999999999999999
Q ss_pred HhCCCCCCCCH---HHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhh-hCCCC
Q 038205 197 SLGWALTEKDE---EDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYR-MGCDP 272 (375)
Q Consensus 197 ~l~~~~~~~~~---~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~-~~~~~ 272 (375)
.++........ .+.+..+.+ .|.++||+|||||||+..+|+.++.++|...+||+|++|||++.||.. ++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~---~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~ 310 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLN---LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY 310 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHH---HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc
Confidence 98764333333 455566666 999999999999999999999999999999999999999999999998 77788
Q ss_pred cccCCCCChHHHHHHHHHHcCCC--CCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCC-CHHHHHHHHHHhhhcccCCC
Q 038205 273 RIKLDALDQAEGLDLLRKHAGID--VADKTMTDVSKRVADECKGLPLAIKAVGSALRLR-TADEWNVALDKLQNAKLDKI 349 (375)
Q Consensus 273 ~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~-~~~~w~~~l~~l~~~~~~~~ 349 (375)
.++++.|+++|||.||++.+|.. ...+.++++|++++++|+|+|||++++|+.|+.| +.++|+++.+.+......+.
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 99999999999999999999843 3345589999999999999999999999999998 88899999999988755555
Q ss_pred CCCCCCchhhhhhhhhhccCCCC
Q 038205 350 EGIDKDSRGVYGCLKFSYDYLNG 372 (375)
Q Consensus 350 ~~~~~~~~~~~~~l~~sy~~L~~ 372 (375)
++ ....++++|++|||+||+
T Consensus 391 ~~---~~~~i~~iLklSyd~L~~ 410 (889)
T KOG4658|consen 391 SG---MEESILPILKLSYDNLPE 410 (889)
T ss_pred Cc---hhhhhHHhhhccHhhhhH
Confidence 33 346799999999999994
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.3e-39 Score=293.03 Aligned_cols=240 Identities=37% Similarity=0.605 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC-
Q 038205 127 TESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT- 203 (375)
Q Consensus 127 r~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 203 (375)
|+.++++|.++|.. ++.++|+|+|+||+||||||..++++.....+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999987 778999999999999999999999997777899999999999999999999999999987632
Q ss_pred ---CCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhhhCC-CCcccCCCC
Q 038205 204 ---EKDEEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYRMGC-DPRIKLDAL 279 (375)
Q Consensus 204 ---~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~~-~~~~~l~~L 279 (375)
..+.......+.+ .+.++++||||||||+...|+.+...++....|++||||||+..++..++. ...+++++|
T Consensus 81 ~~~~~~~~~~~~~l~~---~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRE---LLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp SSCCSSHHHHHHHHHH---HHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred cccccccccccccchh---hhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455667777777 999999999999999999998888777777789999999999998877665 578999999
Q ss_pred ChHHHHHHHHHHcCCCC--CCCCchHHHHHHHHHcCCchhHHHHHHHHhcCC-CHHHHHHHHHHhhhcccCCCCCCCCCc
Q 038205 280 DQAEGLDLLRKHAGIDV--ADKTMTDVSKRVADECKGLPLAIKAVGSALRLR-TADEWNVALDKLQNAKLDKIEGIDKDS 356 (375)
Q Consensus 280 ~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~ 356 (375)
+.+++++||.+.++... .++.+.+.+++|+++|+|+||||+++|++|+.+ +..+|+++++++...... .. ...
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~---~~~ 233 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SR---DYD 233 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SS---GSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc---ccc
Confidence 99999999999998433 345667889999999999999999999999755 778999999988876432 11 135
Q ss_pred hhhhhhhhhhccCCCCC
Q 038205 357 RGVYGCLKFSYDYLNGE 373 (375)
Q Consensus 357 ~~~~~~l~~sy~~L~~~ 373 (375)
.+++.++.+||+.||++
T Consensus 234 ~~~~~~l~~s~~~L~~~ 250 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDE 250 (287)
T ss_dssp HHHHHHHHHHHHSSHTC
T ss_pred ccccccceechhcCCcc
Confidence 78999999999999985
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.4e-36 Score=317.26 Aligned_cols=320 Identities=20% Similarity=0.265 Sum_probs=228.6
Q ss_pred hhhchhcchhHHHHHHHHHHH---HHHHHHHHHHH--------HHHHHHhhhhcccccHHHHHHHHHHHHHHHHHH----
Q 038205 21 KQARYLFCFNSIVKELEDKET---NLKKEKDGINE--------RVEQERQKHCAIVVEKDVEKWLADVVKEMADVR---- 85 (375)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~i~~--------~l~~a~~~~~~~~~~~~~~~Wl~~l~~~~~d~e---- 85 (375)
+++.+.||++++++.++..-+ .+-..++.+.+ ...+|-.+.......+.++.|...+.+++.-+-
T Consensus 76 ~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~ 155 (1153)
T PLN03210 76 NYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ 155 (1153)
T ss_pred CcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecC
Confidence 688899999999998876432 12222222221 233333322222356789999999998862110
Q ss_pred ------HHHHHHhhhccccCCCCCCcchhccccccc--cCCCCCCCccchHHHHHHHHHHHh--cCCCcEEEEEcCCCch
Q 038205 86 ------TLKAKIDKKKSCFNGWYPNWRFRYWMDKEM--PIPRFFSSFETTESACNQIIEALK--KDSTKMVGLHGLGGVG 155 (375)
Q Consensus 86 ------d~~d~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiG 155 (375)
++++++... +..++ ..+..+..++|++..++++..++. .+++++|+|+||||+|
T Consensus 156 ~~~~E~~~i~~Iv~~----------------v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiG 219 (1153)
T PLN03210 156 NWPNEAKMIEEIAND----------------VLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIG 219 (1153)
T ss_pred CCCCHHHHHHHHHHH----------------HHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCc
Confidence 122222211 00000 123456789999999999999874 4568999999999999
Q ss_pred HHHHHHHHHhhhhhcCCccEEEEEEe---cCC-----------CC-hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 038205 156 KTTLAKFVGNQLRQNNIFDKVGIATV---SQD-----------PS-IINVQSELVKSLGWALTEKDEEDRADRLRLMFSE 220 (375)
Q Consensus 156 KTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 220 (375)
|||||+.+|+... ..|+..+|+.. ... .. ...+..+++..+....... ... ...+++ .
T Consensus 220 KTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~-~~~-~~~~~~---~ 292 (1153)
T PLN03210 220 KTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK-IYH-LGAMEE---R 292 (1153)
T ss_pred hHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc-cCC-HHHHHH---H
Confidence 9999999999876 55888777632 111 01 1233444444432211110 001 133445 8
Q ss_pred cCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCC-CCC
Q 038205 221 SKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDV-ADK 299 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~ 299 (375)
+.++|+||||||||+..+|+.+.....+.++||+||||||+..++..++..++|+++.++.++||+||+++||... .+.
T Consensus 293 L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~ 372 (1153)
T PLN03210 293 LKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPD 372 (1153)
T ss_pred HhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcH
Confidence 8899999999999999999988776677788999999999999998777778999999999999999999998543 344
Q ss_pred CchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhhhcccCCCCCCCCCchhhhhhhhhhccCCCCC
Q 038205 300 TMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALDKLQNAKLDKIEGIDKDSRGVYGCLKFSYDYLNGE 373 (375)
Q Consensus 300 ~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 373 (375)
++.+++++|+++|+|+|||++++|++|+.++..+|+.++++|+.... ..+..+|++||+.||++
T Consensus 373 ~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~----------~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 373 GFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD----------GKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc----------HHHHHHHHHhhhccCcc
Confidence 67889999999999999999999999999999999999999876321 34899999999999864
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.47 E-value=2.1e-11 Score=110.04 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=123.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS- 219 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~- 219 (375)
...+.+.|+|++|+||||+++.+++...... + ...|+ +....+..+++..++..++.+............+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998876321 1 12233 333456778888999888776544333333333333221
Q ss_pred -hcCCCcEEEEEeCCCCcc--cccccCC--CC-CCCCCCcEEEEEeCChhHHhhhC----------CCCcccCCCCChHH
Q 038205 220 -ESKSRKILVILDDVWKEL--DLETIGI--PV-GDRDNCCKILLTTRLQQVCYRMG----------CDPRIKLDALDQAE 283 (375)
Q Consensus 220 -~l~~kr~LlVlDdv~~~~--~~~~l~~--~l-~~~~~gs~IivTTr~~~v~~~~~----------~~~~~~l~~L~~~e 283 (375)
...+++++||+||++... .++.+.. .+ ........|++|.... ....+. ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 236788999999998753 3333321 11 1122233555665432 221111 12357899999999
Q ss_pred HHHHHHHHcC---CCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhc------C-C--CHHHHHHHHHHh
Q 038205 284 GLDLLRKHAG---IDVADKTMTDVSKRVADECKGLPLAIKAVGSALR------L-R--TADEWNVALDKL 341 (375)
Q Consensus 284 ~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~------~-~--~~~~w~~~l~~l 341 (375)
..+++...+. ......-..+..+.|++.|+|.|..|+.++..+. + + +.+.++.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999987763 1111223357889999999999999999887762 1 1 455566655543
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.42 E-value=5.8e-13 Score=117.30 Aligned_cols=195 Identities=18% Similarity=0.236 Sum_probs=102.4
Q ss_pred ccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH---------
Q 038205 124 FETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL--------- 194 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------- 194 (375)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.....+ + ..+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 689999999999999887788999999999999999999999885321 1 223333322221 1111111
Q ss_pred -HHHhCCCCC--------CCCHHHHHHHHHHHhhhcC--CCcEEEEEeCCCCcc-ccc-------ccCCCCC--CCCCCc
Q 038205 195 -VKSLGWALT--------EKDEEDRADRLRLMFSESK--SRKILVILDDVWKEL-DLE-------TIGIPVG--DRDNCC 253 (375)
Q Consensus 195 -~~~l~~~~~--------~~~~~~~~~~l~~~~~~l~--~kr~LlVlDdv~~~~-~~~-------~l~~~l~--~~~~gs 253 (375)
...+..... ..........+..++..+. +++++||+||+.... ... .+...+. ......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211000 0111222222333222333 345999999987554 111 1111111 123344
Q ss_pred EEEEEeCChhHHhh--------hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 254 KILLTTRLQQVCYR--------MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 254 ~IivTTr~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
.+|+++.+..+... .+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 55566655544433 233345899999999999999987542210122356679999999999999865
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.4e-11 Score=115.81 Aligned_cols=219 Identities=17% Similarity=0.110 Sum_probs=134.5
Q ss_pred CCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
..+.||++++++|...+.. ...+.+.|+|++|+|||++++.+++........-..++++.....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 5688999999999998733 345678999999999999999999988754323345666666667788899999998
Q ss_pred hCCC-C--CCCCHHHHHHHHHHHhhhcC--CCcEEEEEeCCCCcc------cccccCCCCCCC-CCCcEEEEEeCChhHH
Q 038205 198 LGWA-L--TEKDEEDRADRLRLMFSESK--SRKILVILDDVWKEL------DLETIGIPVGDR-DNCCKILLTTRLQQVC 265 (375)
Q Consensus 198 l~~~-~--~~~~~~~~~~~l~~~~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~-~~gs~IivTTr~~~v~ 265 (375)
+... . ...+..+....+.+ .+. +++.+||||+++... .+..+...+... +....+|.++....+.
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAE---YLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHH---HHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 8642 1 12233444444444 443 467899999997642 222222111111 1123366666654332
Q ss_pred hhhC-------CCCcccCCCCChHHHHHHHHHHcCCCC-CCCCchHHHHHHHHH----cCCchhHHHHHHHHhc------
Q 038205 266 YRMG-------CDPRIKLDALDQAEGLDLLRKHAGIDV-ADKTMTDVSKRVADE----CKGLPLAIKAVGSALR------ 327 (375)
Q Consensus 266 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~----~~glPlai~~i~~~L~------ 327 (375)
.... ....+.+.+++.++..+++..++.... ...-..+..+.+++. .|..+.|+..+-....
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 124678999999999999998763110 011112334444444 4557777776643321
Q ss_pred -CC-CHHHHHHHHHHhhh
Q 038205 328 -LR-TADEWNVALDKLQN 343 (375)
Q Consensus 328 -~~-~~~~w~~~l~~l~~ 343 (375)
.. +.+....+++.+..
T Consensus 267 ~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 12 56777777776533
No 7
>PF05729 NACHT: NACHT domain
Probab=99.31 E-value=1.3e-11 Score=102.74 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=90.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCC----ccEEEEEEecCCCChh---HHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNI----FDKVGIATVSQDPSII---NVQSELVKSLGWALTEKDEEDRADRLRL 216 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 216 (375)
+++.|+|.+|+||||+++.++........ +...+|.......... .+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57899999999999999999988876543 3456666665443322 3444444443221111 1112222
Q ss_pred HhhhcCCCcEEEEEeCCCCccc---------ccccCCC-CCC-CCCCcEEEEEeCChhH---HhhhCCCCcccCCCCChH
Q 038205 217 MFSESKSRKILVILDDVWKELD---------LETIGIP-VGD-RDNCCKILLTTRLQQV---CYRMGCDPRIKLDALDQA 282 (375)
Q Consensus 217 ~~~~l~~kr~LlVlDdv~~~~~---------~~~l~~~-l~~-~~~gs~IivTTr~~~v---~~~~~~~~~~~l~~L~~~ 282 (375)
+ ....++++||||++++... +..+... +.. ..++++++||+|.... .........+.+.+|+++
T Consensus 76 ~--~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 L--LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred H--HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 1 2356899999999875422 1111111 111 2467899999998665 333444468999999999
Q ss_pred HHHHHHHHHc
Q 038205 283 EGLDLLRKHA 292 (375)
Q Consensus 283 e~~~Lf~~~~ 292 (375)
+..+++++.+
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=9.6e-11 Score=123.50 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=128.7
Q ss_pred cccCCCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHH
Q 038205 114 EMPIPRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQS 192 (375)
Q Consensus 114 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~ 192 (375)
|+.+|+.....+-|....+.|-. ....+++.|.||+|.||||++..+... ++.++|+++.. +.++..+..
T Consensus 6 k~~~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 6 KLSRPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccCCCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHH
Confidence 33346666777888877776643 235689999999999999999998752 22588999964 446666767
Q ss_pred HHHHHhCCCCCCC-----------CHHHHHHHHHHHhhhcC--CCcEEEEEeCCCCcc--ccc-ccCCCCCCCCCCcEEE
Q 038205 193 ELVKSLGWALTEK-----------DEEDRADRLRLMFSESK--SRKILVILDDVWKEL--DLE-TIGIPVGDRDNCCKIL 256 (375)
Q Consensus 193 ~i~~~l~~~~~~~-----------~~~~~~~~l~~~~~~l~--~kr~LlVlDdv~~~~--~~~-~l~~~l~~~~~gs~Ii 256 (375)
.++..++...... ........+..++..+. +.+++|||||+...+ ... .+...+.....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 7777764211110 00111222333333333 689999999997542 112 2222223334567898
Q ss_pred EEeCChhHH---hhhCCCCcccCC----CCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcC
Q 038205 257 LTTRLQQVC---YRMGCDPRIKLD----ALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRL 328 (375)
Q Consensus 257 vTTr~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~ 328 (375)
||||...-. ..........+. +|+.+|+.+||....+... -......|.+.|+|.|+++..++..+..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 999974211 111112234455 9999999999988776432 2456788999999999999988877654
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.28 E-value=1.3e-10 Score=105.51 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=133.1
Q ss_pred CCCCCCccchHHHH---HHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESAC---NQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+..++|.+..+ .-|.+.+..+...-.-+|||+|+||||||+.+....... |..++.-.+-..-++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHHHHH
Confidence 77778888887765 445666777888888899999999999999999976633 33444433333344444
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEE--EeCChhHH---hh
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILL--TTRLQQVC---YR 267 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTr~~~v~---~~ 267 (375)
++... .. ...+++.+|++|+|..- .+-+.+ +|.-.+|.-|+| ||.++... ..
T Consensus 93 ~e~a~---------------~~---~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 IEEAR---------------KN---RLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHH---------------HH---HhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 33210 11 44589999999999753 344444 344455666666 66665442 22
Q ss_pred hCCCCcccCCCCChHHHHHHHHHHcCC-----CCCCCCc-hHHHHHHHHHcCCchhHH-HH--HHHHhc-CC---CHHHH
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKHAGI-----DVADKTM-TDVSKRVADECKGLPLAI-KA--VGSALR-LR---TADEW 334 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~~~-~~~~~~i~~~~~glPlai-~~--i~~~L~-~~---~~~~w 334 (375)
.+...++.+++|+.++...++.+-+.. ......+ ++..+-++..++|---++ +. ++..+. .. ..+..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l 231 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELL 231 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 344478999999999999999984321 1111112 456677888888764432 22 222222 22 12333
Q ss_pred HHHHHHhhhcccCCCCCCCCCchhhhhhhhhhccCCCCC
Q 038205 335 NVALDKLQNAKLDKIEGIDKDSRGVYGCLKFSYDYLNGE 373 (375)
Q Consensus 335 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 373 (375)
++.+.+ . ....+.-.+...++..+|.-|...=+++
T Consensus 232 ~~~l~~---~-~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 232 EEILQR---R-SARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHhh---h-hhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 333322 1 1122222234567777777776654444
No 10
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=8e-10 Score=104.29 Aligned_cols=218 Identities=18% Similarity=0.195 Sum_probs=129.6
Q ss_pred CCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcC-Cc---cEEEEEEecCCCChhHHHHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN-IF---DKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~ 193 (375)
..++||++++++|..++.. ...+.+.|+|++|+|||++++.+++...... .. -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4688999999999999853 3456899999999999999999998765321 11 23566776666677889999
Q ss_pred HHHHhC---CCCCC--CCHHHHHHHHHHHhhhc--CCCcEEEEEeCCCCcc-c----ccccCCCC-CCC--CCCcEEEEE
Q 038205 194 LVKSLG---WALTE--KDEEDRADRLRLMFSES--KSRKILVILDDVWKEL-D----LETIGIPV-GDR--DNCCKILLT 258 (375)
Q Consensus 194 i~~~l~---~~~~~--~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~-~----~~~l~~~l-~~~--~~gs~IivT 258 (375)
++.++. ..... .+..+....+.+ .+ .+++++||||+++... . +..+.... ... +....+|.+
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYK---ELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHH---HHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999883 32221 122333333333 44 3568899999998651 1 22221110 111 123345555
Q ss_pred eCChhHHhhhC-----C--CCcccCCCCChHHHHHHHHHHcC---CC-CCCCCchHHHHHHHHHcCCchhHH-HHHHHHh
Q 038205 259 TRLQQVCYRMG-----C--DPRIKLDALDQAEGLDLLRKHAG---ID-VADKTMTDVSKRVADECKGLPLAI-KAVGSAL 326 (375)
Q Consensus 259 Tr~~~v~~~~~-----~--~~~~~l~~L~~~e~~~Lf~~~~~---~~-~~~~~~~~~~~~i~~~~~glPlai-~~i~~~L 326 (375)
|........+. . ...+.+.+++.++..+++..++. .. ...++..+....++..+.|.|-.+ ..+-...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55433221111 1 24688999999999999998763 11 112232334455666777888543 3332211
Q ss_pred ----c---CC-CHHHHHHHHHHhh
Q 038205 327 ----R---LR-TADEWNVALDKLQ 342 (375)
Q Consensus 327 ----~---~~-~~~~w~~~l~~l~ 342 (375)
. .. +.+..+.+.+.+.
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH
Confidence 1 12 5666666665553
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.15 E-value=1.6e-09 Score=99.64 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=109.6
Q ss_pred CCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 121 FSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
+..|+|+++.++.|..++.. ...+.+.++||+|+|||+||+.+++..... + .....+.... ...+...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~-~~~l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEK-PGDLAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcC-chhHHHHH
Confidence 46789999999999888852 335678899999999999999999877532 2 1121111111 11222223
Q ss_pred HHhCCCC-------CCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhhh
Q 038205 196 KSLGWAL-------TEKDEEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYRM 268 (375)
Q Consensus 196 ~~l~~~~-------~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~ 268 (375)
..++... ...+ ....+.+.. .+.+.+..+|+++..+...+.. .++ +.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~---~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYP---AMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhH---HHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHH
Confidence 3332110 0001 112222333 4555556666666544444331 122 234555667764433221
Q ss_pred -C-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHH
Q 038205 269 -G-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGS 324 (375)
Q Consensus 269 -~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~ 324 (375)
+ ....+.+++++.++..+++.+.+.... ..-..+....|++.|+|.|-.+..+..
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 1 124678999999999999998876322 122256778999999999976654443
No 12
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.15 E-value=5.1e-10 Score=106.93 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred CCCCCCccchHHHHHH---HHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESACNQ---IIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+..++|++..+.. |..++..+....+.++|++|+||||||+.+++.... . |+.++........++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~-----~~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--P-----FEALSAVTSGVKDLREV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----EEEEecccccHHHHHHH
Confidence 5667789999988766 888888777788999999999999999999887652 2 23232221111112222
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEE--EeCChhHH---hh
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILL--TTRLQQVC---YR 267 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTr~~~v~---~~ 267 (375)
+... .. ....+++.+|++|+++.. .+.+.+...+. .|..+++ ||.+.... ..
T Consensus 81 i~~~----------------~~--~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 81 IEEA----------------RQ--RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHH----------------HH--hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 2211 11 022457889999999864 23333333332 2344444 34443211 12
Q ss_pred hCCCCcccCCCCChHHHHHHHHHHcCCC-CCC-CCchHHHHHHHHHcCCchhHHHHH
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKHAGID-VAD-KTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~-~~~~~~~~~i~~~~~glPlai~~i 322 (375)
.+....+.+.+++.++...++.+.+... ... .-..+..+.|++.|+|.|..+..+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 2233678999999999999999865421 111 223567788999999999766443
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.14 E-value=2e-09 Score=99.90 Aligned_cols=191 Identities=16% Similarity=0.118 Sum_probs=108.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..|+|+++.++.+..++.. ...+.+.|+|++|+||||||+.+++..... + .+...+ .......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHHH
Confidence 56778899999999998877742 335678999999999999999999987632 1 112111 111112223
Q ss_pred HHHHHhCCCC----CCCC--HHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 193 ELVKSLGWAL----TEKD--EEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 193 ~i~~~l~~~~----~~~~--~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
.++..+.... ++.+ .....+.+.. .+.+.+..+++|+..+...+.. .++ +.+-|..||+...+..
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~---~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~ 165 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYP---AMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTS 165 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHH---HHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCH
Confidence 3333322110 0000 0111122222 3444444555554433222211 111 2344556666443332
Q ss_pred hhC--CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHH
Q 038205 267 RMG--CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGS 324 (375)
Q Consensus 267 ~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~ 324 (375)
.+. ....+++++++.++..+++.+.+.... ..--.+....|++.|+|.|-.+..+..
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 211 124689999999999999998876332 122256789999999999975555444
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=99.06 E-value=2.3e-09 Score=94.09 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=102.5
Q ss_pred CCCCCccchHHH--HHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 119 RFFSSFETTESA--CNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 119 ~~~~~~~gr~~~--~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
..+..|++-+.. ...+.+.......+.+.|+|++|+|||+|++.+++..... ...+.|+...... ...
T Consensus 13 ~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~----- 82 (229)
T PRK06893 13 ETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS----- 82 (229)
T ss_pred ccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh-----
Confidence 345566643322 2222222233345678999999999999999999987543 2344566543110 000
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc---ccccc-cCCCCCC-CCCCcEEEE-EeCC---------
Q 038205 197 SLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE---LDLET-IGIPVGD-RDNCCKILL-TTRL--------- 261 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~Iiv-TTr~--------- 261 (375)
...+. .+. +.-+|+|||++.. ..|.. +...+.. ...|+.+|+ |+..
T Consensus 83 --------------~~~~~----~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~ 143 (229)
T PRK06893 83 --------------PAVLE----NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKL 143 (229)
T ss_pred --------------HHHHh----hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccc
Confidence 01111 222 3349999999863 33432 2222221 123556655 4443
Q ss_pred hhHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 262 QQVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 262 ~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
+.+...+.....+++++++.++.++++++.+.... ..--.++.+-|++.+.|..-.+..+
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 46666666677899999999999999998886332 1222567788888888776655443
No 15
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=3.8e-08 Score=92.43 Aligned_cols=194 Identities=20% Similarity=0.203 Sum_probs=110.3
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+...+|.+..++.+...+..++ .+.+.++|+.|+||||+|+.+.+...-..... ..+...-....++..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEK 84 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhc
Confidence 6677888999999999999887765 45678999999999999999988764211000 000000001111111
Q ss_pred HhCCCC------CCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCC-hhHHh
Q 038205 197 SLGWAL------TEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRL-QQVCY 266 (375)
Q Consensus 197 ~l~~~~------~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~-~~v~~ 266 (375)
...... .....++....+..+.. ...+++-++|+|+++... .++.+...+.......++|++|.+ ..+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 100000 00111121111111000 123456699999998653 344444444433445677776654 33332
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
. .+....+++.+++.++..+.+.+.+.... ..--.+.++.|++.++|.|-.+
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2 22236789999999999998887664221 1112456788999999988633
No 16
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.99 E-value=1.3e-08 Score=89.27 Aligned_cols=173 Identities=15% Similarity=0.109 Sum_probs=104.0
Q ss_pred CCCcc--chHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHh
Q 038205 121 FSSFE--TTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSL 198 (375)
Q Consensus 121 ~~~~~--gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 198 (375)
+..|+ +....+..+..++.......+.|+|++|+|||+||+.+++..... ....+++..+.-. ...
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~------~~~---- 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELA------QAD---- 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHH------HhH----
Confidence 34454 355677888887766667899999999999999999999876532 2334455433211 000
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---cc-cccCCCCCC-CCCCcEEEEEeCCh---------hH
Q 038205 199 GWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---DL-ETIGIPVGD-RDNCCKILLTTRLQ---------QV 264 (375)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTr~~---------~v 264 (375)
..+++.+.+. -+|||||++... .| ..+...+.. ...+..+|+||+.. .+
T Consensus 82 ----------------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 82 ----------------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ----------------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 0111123232 389999997543 22 223222211 12334788888743 22
Q ss_pred HhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHH
Q 038205 265 CYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVG 323 (375)
Q Consensus 265 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~ 323 (375)
...+.....+++.+++.++...++...+.... .+--.+..+.|.+.+.|.|..+..+-
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 23333346789999999999999987543111 11224566778888888888776553
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=6.7e-09 Score=102.67 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=114.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC-------------------CccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN-------------------IFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 177 (375)
|..+..++|.+..++.|.+++..++ .+.+.++|+.|+||||+|+.+.+...-.. .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 6677889999999999999998776 45668999999999999998887664211 111122
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 254 (375)
++..+.+ ...++..+.+..... -..++.-++|||+++... .+..+...+..-....+
T Consensus 92 EIDAas~--------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 92 EMDAASN--------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred Eeccccc--------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 2211111 111222222222111 123455689999998653 35555444444344678
Q ss_pred EEEEeCChh-HHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch-hHHHH
Q 038205 255 ILLTTRLQQ-VCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP-LAIKA 321 (375)
Q Consensus 255 IivTTr~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~ 321 (375)
+|+||++.. +... .+.-..+++..++.++..+.+.+.+..+... -..+..+.|++.++|.. -++..
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 887777643 3222 2223678999999999999999887533211 22566788888998855 45554
No 18
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.99 E-value=1.1e-08 Score=95.57 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=110.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCcc-EEEEEEecCCCC-hhHHHH---
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFD-KVGIATVSQDPS-IINVQS--- 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~--- 192 (375)
|..+..++|++..++.|..++..+..+.+.++|++|+||||+|+.+.+...... +. ..+.++.+.... ....+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcchhhhhcCc
Confidence 566778899999999999999887766789999999999999999988765321 11 123333321100 000000
Q ss_pred HHHHHhCCC--CCCCCHHHHHHHHHHHhhh--cCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCChh-HH
Q 038205 193 ELVKSLGWA--LTEKDEEDRADRLRLMFSE--SKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRLQQ-VC 265 (375)
Q Consensus 193 ~i~~~l~~~--~~~~~~~~~~~~l~~~~~~--l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~~~-v~ 265 (375)
.....++.. ......+.....+...... ..+.+-+||+||++... ....+...+......+++|+||.+.. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 0000111111222221111 12345589999997542 22223222222234467887775432 22
Q ss_pred hhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 266 YRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 266 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
..+ .....+.+.+++.++...++.+.+...... --.+..+.+++.++|.+-.+.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 222 223568889999999999998876422211 225677888888888766553
No 19
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.5e-08 Score=102.18 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=111.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCc-EEEEEcCCCchHHHHHHHHHhhhhhcCC-------------------ccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTK-MVGLHGLGGVGKTTLAKFVGNQLRQNNI-------------------FDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 177 (375)
|..+..++|.+..+..|.+++..++.. .+.++|+.|+||||+|+.+++...-... |..++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 667788999999999999999877655 4589999999999999999987642111 11111
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKI 255 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~I 255 (375)
++....... .+.++++...+ .. ....+++-++|||+++.. ..++.+...+..-....++
T Consensus 92 EidAas~~k-VDdIReLie~v----------------~~--~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 92 EVDAASRTK-VDDTRELLDNV----------------QY--RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EeccccccC-HHHHHHHHHHH----------------Hh--hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 121110001 11112222111 10 022467779999999754 3455544444333344566
Q ss_pred EEEeCC-hhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 256 LLTTRL-QQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 256 ivTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
|++|.+ ..+... ......+++.+|+.++....+.+.+.... ...-.+....|++.++|.|--+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 665544 444322 22236799999999999999988764322 1222466788999999988633
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.6e-08 Score=98.72 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=113.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+.+...-...-.... +. +.....-...+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT-AQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC-CCCCcccHHHHHHHc
Confidence 66778899999999999999987764 4568999999999999999988764210000000 00 000000011111110
Q ss_pred Hh-----CCC-CCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHh
Q 038205 197 SL-----GWA-LTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCY 266 (375)
Q Consensus 197 ~l-----~~~-~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~ 266 (375)
.- ... ......++..+.+..... ...++.-++|||+++.. ..++.+...+..-...+++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 000 001122333333322111 22456679999999864 3455555555443345666665554 44432
Q ss_pred hh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 267 RM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 267 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
.+ +.-..+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|.-..
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 22 2226789999999999999887764322121 24556788999999986443
No 21
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.9e-08 Score=98.47 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=112.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC-------------------CccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN-------------------IFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 177 (375)
|..+...+|.+...+.|..++..++ .+.+.++|+.|+||||+|+.+++...-.. .|..++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 6677889999999999999998776 45779999999999999999987764211 111111
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
.+..+.. ...++..+.+.... ....+++-++|+|+++.. .....+...+.....+.+
T Consensus 91 EIDAAs~--------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 91 EIDAASR--------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred Eeccccc--------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 2211111 11222222222110 022356679999999864 344444444433334567
Q ss_pred EEEEeCCh-hHH-hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 255 ILLTTRLQ-QVC-YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 255 IivTTr~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+|++|.+. .+. ........+++.+++.++....+.+.+...... --......|++.++|.+-.+
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 88777653 222 112333678999999999999998877532212 22456678888898877543
No 22
>PLN03025 replication factor C subunit; Provisional
Probab=98.94 E-value=1.6e-08 Score=93.38 Aligned_cols=183 Identities=16% Similarity=0.133 Sum_probs=105.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccE-EEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDK-VGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.++.+..|..++..+..+.+.++|++|+||||+|+.+++..... .|.. ++-+..+...+. +.++++..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~-~~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGI-DVVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccH-HHHHHHHH
Confidence 66777888999999999888887777778899999999999999998876421 1211 111111111111 12222221
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCCh-hHHhh-hCCCC
Q 038205 197 SLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRLQ-QVCYR-MGCDP 272 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~~-~v~~~-~~~~~ 272 (375)
.+.. .-.....++.-+++||+++... ....+...+......+++|+++... .+... .....
T Consensus 87 ~~~~---------------~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 87 MFAQ---------------KKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHh---------------ccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 1100 0000112456799999998642 2222222222223446677766542 22111 12225
Q ss_pred cccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 273 RIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 273 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
.+++.+++.++....+...+..+...- -.+....|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 789999999999999988774322111 145677888888876643
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.93 E-value=3.8e-07 Score=91.12 Aligned_cols=204 Identities=15% Similarity=0.088 Sum_probs=116.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCc---cEEEEEEecCC---CChhHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF---DKVGIATVSQD---PSIINVQ 191 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~ 191 (375)
|..+..++|++..+..+...+.......+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 56667788999999998888876667789999999999999999998877543322 12334444321 1111111
Q ss_pred HHH---------------HHHhCCC----------------CCC--CCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--
Q 038205 192 SEL---------------VKSLGWA----------------LTE--KDEEDRADRLRLMFSESKSRKILVILDDVWKE-- 236 (375)
Q Consensus 192 ~~i---------------~~~l~~~----------------~~~--~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~-- 236 (375)
..+ +...+.. .++ .-+...+..+.. .+..+++.++-|+.|..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~---~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK---VLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH---HHhhCeEEeecceeccCCc
Confidence 111 1111100 000 001223344444 66667777776655543
Q ss_pred ccccccCCCCCCCCCCcEEEE--EeCChhH-Hhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHc
Q 038205 237 LDLETIGIPVGDRDNCCKILL--TTRLQQV-CYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADEC 312 (375)
Q Consensus 237 ~~~~~l~~~l~~~~~gs~Iiv--TTr~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~ 312 (375)
..|+.+...+....+...+++ ||++... ...+ +....+.+.+++.++.+.++.+.+...... --.++.+.|.+.+
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys 385 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYT 385 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCC
Confidence 345555544544444444444 5554321 1111 222467889999999999999977532111 1145556666666
Q ss_pred CCchhHHHHHHHH
Q 038205 313 KGLPLAIKAVGSA 325 (375)
Q Consensus 313 ~glPlai~~i~~~ 325 (375)
..-+-++..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 5556777766544
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.93 E-value=3.3e-08 Score=91.43 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=107.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec--CCCChhHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS--QDPSIINVQSELV 195 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~~i~ 195 (375)
|..+..++|+++.++.+..++..+..+.+.++|++|+||||+++.+.+...... +.. .++.+. ..... ....+.+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~-~~~~~~i 89 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGI-DVIRNKI 89 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccch-HHHHHHH
Confidence 556677889999999999999877777789999999999999999988764322 111 122221 11111 1111111
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCCh-hHHh-hhCCC
Q 038205 196 KSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRLQ-QVCY-RMGCD 271 (375)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~~-~v~~-~~~~~ 271 (375)
..+ ..........+-++++|+++... ....+...+......+.+|+++... .+.. .....
T Consensus 90 ~~~----------------~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 90 KEF----------------ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHH----------------HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 111 00000111346689999987542 2223322233223446777766432 1211 11222
Q ss_pred CcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 272 PRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 272 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
..+++.+++.++....+...+...... -..+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 468899999999998888877532211 12567788999999887754
No 25
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=3e-08 Score=96.33 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=112.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..++.|..++..+.. +.+.++|++|+||||+|+.+++...-.+.+....|.|.+... +......-+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 56677889999999999999887764 456999999999999999998877532222212222211000 0000000000
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHhhh-CC
Q 038205 197 SLGWALTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCYRM-GC 270 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~~-~~ 270 (375)
.+... .....+...+ +.+... ...+++-++|+|+++.. ..+..+...+......+.+|++|.. ..+...+ ..
T Consensus 89 el~~~-~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDAA-SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eeccc-ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00000 1111122222 111111 22356679999999754 3455554444433344555555543 3333222 22
Q ss_pred CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 271 DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 271 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
...+++.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 35789999999999999998774322121 2566788999999988644
No 26
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.91 E-value=8.9e-09 Score=92.30 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=104.0
Q ss_pred CCCCCCccchHHHH---HHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESAC---NQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|+.+..++|.+..+ ..|.+.+.++..+.+.+|||+|+||||||+.+....+... ..||..+....-..-.+.|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHH
Confidence 66667777776654 3345556778888999999999999999999999877543 5577777666555556666
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEE--EeCChhH---Hhh
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILL--TTRLQQV---CYR 267 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTr~~~v---~~~ 267 (375)
+++... .. .+.++|.+|.+|+|..- .+-+.+ +|...+|.-++| ||.++.. ...
T Consensus 210 fe~aq~--------------~~---~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 210 FEQAQN--------------EK---SLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHH--------------HH---hhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHH
Confidence 554310 01 56678999999999643 333333 445556666555 7777544 222
Q ss_pred hCCCCcccCCCCChHHHHHHHHHH
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKH 291 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~ 291 (375)
+..-.++-|++|+.++...++.+-
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHH
Confidence 344468899999999999999873
No 27
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=3.4e-08 Score=95.15 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=116.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCC-------------------ccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNI-------------------FDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 177 (375)
|..+..++|.+.....|...+..+.. +.+.++||+|+||||+|+.+.+...-... +..+.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 66778899999998888888877765 45899999999999999999887542110 00111
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKI 255 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~I 255 (375)
.+..+....... ++++...+ .. ....+++-++|+|+++.. ...+.+...+......+.+
T Consensus 90 el~aa~~~gid~-iR~i~~~~----------------~~--~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 90 ELDAASNRGIDE-IRKIRDAV----------------GY--RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEeCcccCCHHH-HHHHHHHH----------------hh--ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 222111111111 11111111 00 022346679999999754 2334443333332233444
Q ss_pred EEEeCC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcC-CchhHHHHHHHHhc---CC
Q 038205 256 LLTTRL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECK-GLPLAIKAVGSALR---LR 329 (375)
Q Consensus 256 ivTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~-glPlai~~i~~~L~---~~ 329 (375)
|++|.+ ..+...+ .....+.+.+++.++....+.+.+..... .-..+....|++.++ +++.++..+-.+.. .+
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~ 229 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWKFSEGK 229 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 544443 3333322 23367899999999999998887642211 122456778888775 55677777755432 12
Q ss_pred -CHHHHHHHH
Q 038205 330 -TADEWNVAL 338 (375)
Q Consensus 330 -~~~~w~~~l 338 (375)
+.+....++
T Consensus 230 It~e~V~~~l 239 (472)
T PRK14962 230 ITLETVHEAL 239 (472)
T ss_pred CCHHHHHHHH
Confidence 555555444
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.91 E-value=1.3e-08 Score=86.65 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=95.3
Q ss_pred CCCCCCccchHHHHHHHHHHHh-----cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALK-----KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..|+|.++.+..+.-++. .+....+.+|||+|+||||||..+.+..... |. +.+.+.-... .-+.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~-~dl~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKA-GDLA 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SC-HHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhH-HHHH
Confidence 7788999999998888765543 2346788999999999999999999988743 32 2222110011 1111
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---------cccccCC--CCCCC----------CC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---------DLETIGI--PVGDR----------DN 251 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---------~~~~l~~--~l~~~----------~~ 251 (375)
.++. .++ ++-+|.+|+++... .++.... ....+ .+
T Consensus 94 ~il~-----------------------~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 94 AILT-----------------------NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HHHH-----------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HHHH-----------------------hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1211 222 34467778876431 0111000 00000 12
Q ss_pred CcEEEEEeCChhHHhhhCCC--CcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHH
Q 038205 252 CCKILLTTRLQQVCYRMGCD--PRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSA 325 (375)
Q Consensus 252 gs~IivTTr~~~v~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~ 325 (375)
-+-|=-|||...+...+... -..+++..+.+|...+..+.+..-. .+-..+.+.+|+++|.|-|--..-+-+.
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 24455788876554443332 3458999999999999998775322 1222678899999999999765544333
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.90 E-value=4.7e-08 Score=96.68 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=130.4
Q ss_pred CCCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-CChhHHHHHHH
Q 038205 117 IPRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-PSIINVQSELV 195 (375)
Q Consensus 117 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 195 (375)
+|..+...+-|....+.|.+ ..+.+.+.|..|+|.|||||+.+....... -..+.|.+.... .++..+++.++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHH
Confidence 34455666777766665544 236789999999999999999999873332 356899998754 57888888888
Q ss_pred HHhCCCCCCCCHH-----------HHHHHHHHHhhhcC--CCcEEEEEeCCCCc--ccc-cccCCCCCCCCCCcEEEEEe
Q 038205 196 KSLGWALTEKDEE-----------DRADRLRLMFSESK--SRKILVILDDVWKE--LDL-ETIGIPVGDRDNCCKILLTT 259 (375)
Q Consensus 196 ~~l~~~~~~~~~~-----------~~~~~l~~~~~~l~--~kr~LlVlDdv~~~--~~~-~~l~~~l~~~~~gs~IivTT 259 (375)
..++.......++ .....+..++..+. .+++.|||||..-. ..+ ..+...+.....+..+|+||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 8887443332221 11122233222333 36899999997532 111 12222233445678999999
Q ss_pred CChhHHhhhC---CCCcccC----CCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhc
Q 038205 260 RLQQVCYRMG---CDPRIKL----DALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALR 327 (375)
Q Consensus 260 r~~~v~~~~~---~~~~~~l----~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~ 327 (375)
|+..-+.... ....+++ -.|+.+|+-++|....+... ...-.+.+.+..+|-+-|+..++=.++
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9854322211 1122333 34889999999998764322 245578899999999999999887777
No 30
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=8.4e-08 Score=88.41 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=111.1
Q ss_pred CCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhh----hcCCccEEEEEEe-cCCCChhHHHHHH
Q 038205 121 FSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLR----QNNIFDKVGIATV-SQDPSIINVQSEL 194 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i 194 (375)
+...+|.+..++.+..++..+. .+.+.++|+.|+||||+|+.++...- ...+++...|... +....... ++++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 3456788899999999997765 45779999999999999999988652 2234555445432 11112222 2222
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCC--cccccccCCCCCCCCCCcEEEEEeCChhHH-hh-hCC
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWK--ELDLETIGIPVGDRDNCCKILLTTRLQQVC-YR-MGC 270 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTr~~~v~-~~-~~~ 270 (375)
...+.. ....+++-++|+|+++. ...+..+...+..-..++.+|++|.+.+.. .. ...
T Consensus 82 ~~~~~~------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 82 IEEVNK------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHhc------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 222211 02334556777777653 445666666665555678888888764322 21 222
Q ss_pred CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 271 DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 271 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
...+++.++++++....+.+..... ..+.++.++..++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 3678999999999988887654211 13446778899999886543
No 31
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=3.3e-08 Score=94.01 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=111.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++...-...... .......+ ...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHc
Confidence 67778899999999999999988775 46899999999999999999887642211000 00000001 111111
Q ss_pred HhCCCC------CCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEE-eCChhHHh
Q 038205 197 SLGWAL------TEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLT-TRLQQVCY 266 (375)
Q Consensus 197 ~l~~~~------~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivT-Tr~~~v~~ 266 (375)
...... .....++..+....+.. ...++.-++|+|+++.. ..+..+...+........+|++ |....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 111100 01111222222211111 23456679999999854 4456554444333334555544 44444433
Q ss_pred hh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 267 RM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 267 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
.. ..-..+.+.+++.++..+.+.+.+...... --.+....|++.++|.+-
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHH
Confidence 32 222568999999999999888876532211 125667889999999885
No 32
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=5.7e-08 Score=94.04 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=113.3
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccE-EEEEEecCCCChhHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDK-VGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 195 (375)
|..+...+|.+..+..|...+..+. .+.+.++|+.|+||||+|+.+++...-...... ..+... ..-.....+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHHh
Confidence 6777888999999999988877665 468899999999999999999887642111000 000000 0000000010
Q ss_pred HHhCC------CCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEE-EeCChhHH
Q 038205 196 KSLGW------ALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILL-TTRLQQVC 265 (375)
Q Consensus 196 ~~l~~------~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTr~~~v~ 265 (375)
..... .......++....+.... ....+++-++|+|+++.. ..+..+...+....+.+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000 001112223322222210 023456779999999864 345555444443334556554 55545554
Q ss_pred hhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 266 YRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 266 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
..+ .....+++.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 333 2335688999999999999998875332122 2456677888998877533
No 33
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=6.7e-08 Score=94.17 Aligned_cols=184 Identities=19% Similarity=0.240 Sum_probs=110.3
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhc-------------------CCccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQN-------------------NIFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 177 (375)
|..+..++|.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++...-. ..|...+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 66778889999999999999987654 457899999999999999998765421 0122222
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
++.......+ ++....+..+.. ...+++-++|+|+++.. ..++.+...+......+.
T Consensus 92 eidaas~~gv--------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 92 EIDAASRTGV--------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EeecccccCH--------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 2222111111 111111111100 23456779999999754 334444444443334556
Q ss_pred EEEEeC-ChhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHH
Q 038205 255 ILLTTR-LQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAV 322 (375)
Q Consensus 255 IivTTr-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i 322 (375)
+|++|. ...+... ......+++.+++.++....+.+.+.... ..--......|++.++|.+- |+..+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665544 3334322 23336889999999999888887654222 12224556788888988664 44444
No 34
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.4e-07 Score=85.44 Aligned_cols=168 Identities=24% Similarity=0.276 Sum_probs=113.7
Q ss_pred CCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
..+.+|+++++++...|.. ..+.-+.|+|++|+|||++++.+.........-..+++++.....+...++..|+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 3477899999999988733 334459999999999999999999998764322227888888889999999999999
Q ss_pred hC-CCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc-----ccccCCCCCCCCCCcE--EEEEeCChhHHhh--
Q 038205 198 LG-WALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD-----LETIGIPVGDRDNCCK--ILLTTRLQQVCYR-- 267 (375)
Q Consensus 198 l~-~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~--IivTTr~~~v~~~-- 267 (375)
++ .+....+..+....+.+.+.. .++.+++|||+++.... +-.+....... .++ +|..+.+..+...
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSK-KGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHh-cCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhh
Confidence 95 233334455566666663322 45899999999975422 21221111111 344 3334444433222
Q ss_pred ------hCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 268 ------MGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 268 ------~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
++. ..+.+.|-+.+|...++..++.
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 222 2378899999999999998764
No 35
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.7e-07 Score=86.98 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=115.7
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCC--ccEEEEEEecCCCChhHHHH
Q 038205 116 PIPRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNI--FDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 116 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 192 (375)
|.|..+...+|.++....+...+..+. ...+.|+|+.|+||||+|..+.+..--... +... ............+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 557788889999999999999998776 456999999999999999999887643110 1110 0000111111223
Q ss_pred HHHHHhC-------CCCC--------CCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCc
Q 038205 193 ELVKSLG-------WALT--------EKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCC 253 (375)
Q Consensus 193 ~i~~~l~-------~~~~--------~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 253 (375)
.+...-. .+.+ ....++.. .+.+.+. ...+++-++|+|+++.. ...+.+...+..-...+
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 3322211 0100 11122222 2333222 22456779999999854 23333333332222334
Q ss_pred EEEEEeCC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 254 KILLTTRL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 254 ~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
.+|++|.. ..+.... +....+++.+++.++...++.+..... . -..+....+++.++|.|.....+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55554443 3333222 222689999999999999998743221 1 12455788999999999866543
No 36
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1e-07 Score=94.22 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCc--cEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIF--DKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+..++|.+..+..|.+++..+.. +.+.++|+.|+||||+|+.+.+...-.... ..... ...+.-...+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 66778899999999999999987765 567999999999999999997665311000 00000 000001111111
Q ss_pred HHHhCC------CCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhH
Q 038205 195 VKSLGW------ALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQV 264 (375)
Q Consensus 195 ~~~l~~------~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v 264 (375)
...-.. .......++..+.+.... .-..++.-++|||+++.. ..+..+...+..-...+++|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 100000 000111222222222210 012345568999999864 3455554444433345566665543 333
Q ss_pred Hh-hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 265 CY-RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 265 ~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
.. .......+++.+++.++....+.+.+....... -......|++.++|.+--+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 32 233346789999999999999988764322121 24567888889988775443
No 37
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=8.9e-08 Score=93.26 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=108.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCc-EEEEEcCCCchHHHHHHHHHhhhhhcC-------------------CccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTK-MVGLHGLGGVGKTTLAKFVGNQLRQNN-------------------IFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 177 (375)
|..+...+|.+..+..|..++..+..+ .+.++|+.|+||||+|+.+.+...-.. .|..++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 677788999999999999999877654 578999999999999999987664211 111222
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
.+..+.... .++..+.+.... ....++.-++|+|+++.. .....+...+..-...++
T Consensus 92 eidaas~~~--------------------v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 92 EVDAASRTK--------------------VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEcccccCC--------------------HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 222221111 122222221110 022356668999999854 334444333333334566
Q ss_pred EEEEeCC-hhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 255 ILLTTRL-QQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 255 IivTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+|++|.+ ..+... ......+++.+++.++....+.+.+....... -......|++.++|.|--+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 6665544 333322 22235688999999998887776654222121 2445677888888887544
No 38
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=8.8e-08 Score=92.06 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=110.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhc-------------------CCccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQN-------------------NIFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 177 (375)
|..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+.....-. ..+..++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 66778899999999999988877765 479999999999999999987754210 1112223
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKI 255 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~I 255 (375)
.+..+....+.+ .+++..... . .-..+++-++|+|+++.. ..++.+...+..-.+.+++
T Consensus 89 eidaas~~~vdd-IR~Iie~~~----------------~--~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 89 EIDAASNTSVDD-IKVILENSC----------------Y--LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEecccCCCHHH-HHHHHHHHH----------------h--ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 333322222211 112221110 0 022346668999999754 2344444444333345666
Q ss_pred EEEeC-ChhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 256 LLTTR-LQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 256 ivTTr-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
|++|. ...+... ......+.+.+++.++....+.+.+...... --.+..+.|++.++|.+-.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 66554 3444333 2333678999999999999998877532211 1245667888888887753
No 39
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=6.6e-08 Score=95.50 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=109.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCC-------------------ccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNI-------------------FDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 177 (375)
|..+..++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+.+...-... |..++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 66778899999999999999987764 56899999999999999999876532110 11111
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 254 (375)
.+..... ...+.+.+.+.... .-..+++-++|+|+++... ....+...+......++
T Consensus 92 EidaAs~--------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 92 EIDAASN--------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EEecccc--------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 1211111 11122222221100 0123466799999997542 23333333332234466
Q ss_pred EEEEeCC-hhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 255 ILLTTRL-QQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 255 IivTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+|++|.+ ..+... .+....+.+.+++.++....+.+.+...... -.......|++.++|.+.-+
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHH
Confidence 7766654 322211 2222567889999999999998877532212 12456788999999988544
No 40
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.3e-07 Score=86.67 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=112.9
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEE----EEEecCCCChhHH
Q 038205 116 PIPRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVG----IATVSQDPSIINV 190 (375)
Q Consensus 116 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~~~~~~~~~~~ 190 (375)
|-|+.+...+|.+.....|.+.+..+.. ..+.++|+.|+||+|+|..+.+..--........ -.+.... ..-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~ 91 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPV 91 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChH
Confidence 4577778899999999999999988764 4689999999999999998877653211000000 0000000 00011
Q ss_pred HHHHHHHhCCC-------CCCCC----HHHHHHHHHHHhhhc-----CCCcEEEEEeCCCCc--ccccccCCCCCCCCCC
Q 038205 191 QSELVKSLGWA-------LTEKD----EEDRADRLRLMFSES-----KSRKILVILDDVWKE--LDLETIGIPVGDRDNC 252 (375)
Q Consensus 191 ~~~i~~~l~~~-------~~~~~----~~~~~~~l~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 252 (375)
.+.+...-..+ .++.. ..-..+.++++.+.+ .+++.++|+||++.. .....+...+..-..+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11111111000 00000 000112222222222 346779999998754 3334443334333345
Q ss_pred cEEEEEeCChh-HHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 253 CKILLTTRLQQ-VCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 253 s~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
+.+|++|++.. +.... .....+.+.+++.++..+++.+..... + ......++..++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 66777777643 33222 223678999999999999998865321 1 122267899999999866443
No 41
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=6.5e-08 Score=95.76 Aligned_cols=194 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+.+...-...+. ......-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 67778899999999999999987764 4468999999999999999987664211000 000000111111111
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHh
Q 038205 197 SLGWA------LTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCY 266 (375)
Q Consensus 197 ~l~~~------~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~ 266 (375)
.-..+ ......++..+.+..+. ....+++-++|+|+++.. ...+.+...+..-...+++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 00000 00011222222222211 123456779999999754 3444444444333334566655544 44432
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
. .+....+++.+++.++....+.+.+...... .-......|++.++|.|--+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 2 2233678999999999999998876322111 12455678899999977643
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.81 E-value=2.3e-07 Score=87.21 Aligned_cols=183 Identities=14% Similarity=0.194 Sum_probs=109.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC--------------------CccEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN--------------------IFDKV 176 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~ 176 (375)
|..+...+|.+..++.|.+++..+. .+.+.++|++|+||||+|+.+.....-.. +++.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 4556778999999999999997765 45678999999999999999987754210 1111
Q ss_pred EEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 177 GIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 177 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
.++....... ....+++...+ .. ....+++-++|+|+++.. .....+...+......+.
T Consensus 89 ~~~~~~~~~~-~~~~~~l~~~~----------------~~--~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 IEIDAASNNG-VDDIREILDNV----------------KY--APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEeeccccCC-HHHHHHHHHHH----------------hc--CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 2221111101 01111121111 00 023345668999998654 334444333433334566
Q ss_pred EEEEeCChh-HHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 255 ILLTTRLQQ-VCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 255 IivTTr~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
+|++|.+.. +... ......+++.++++++....+...+...... --.+.+..+++.++|.|..+..
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALS 217 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHH
Confidence 667765543 2222 2223578889999999999888766422111 1246778889999998875543
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.80 E-value=1.1e-07 Score=83.66 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCH
Q 038205 128 ESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDE 207 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 207 (375)
...+..+..+......+.+.|+|++|+|||+|++.+++..... -..+.++.+..... ..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~-------------------~~ 88 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-------------------FV 88 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------------hh
Confidence 4455666666555566789999999999999999999876643 23445555432100 00
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCc---ccccc-cCCCCCC-CCCC-cEEEEEeCCh---------hHHhhhCCCC
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKE---LDLET-IGIPVGD-RDNC-CKILLTTRLQ---------QVCYRMGCDP 272 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~g-s~IivTTr~~---------~v~~~~~~~~ 272 (375)
.+. + + .+. +--+|++||+... ..|+. +...+.. ...| .++|+||+.. .+.+++....
T Consensus 89 ~~~---~-~---~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~ 160 (235)
T PRK08084 89 PEV---L-E---GME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ 160 (235)
T ss_pred HHH---H-H---Hhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc
Confidence 011 1 1 111 1248999999753 23332 1111211 1123 4789998753 4455566668
Q ss_pred cccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 273 RIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 273 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
++++.+++.++-.+++.+.+.... -.--+++..-|++.+.|..-++..
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 899999999999999988664321 122256778888888876655543
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.80 E-value=7.2e-09 Score=82.61 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc---CCccEEEEEEecCCCChhHHHHHHHHHhCCCCCC-CCHHHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN---NIFDKVGIATVSQDPSIINVQSELVKSLGWALTE-KDEEDRADRLRLM 217 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 217 (375)
+.+.+.|+|++|+|||++++.+.+..... ..-..++|+..+...+...+...++..++..... .+.......+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~- 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID- 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH-
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH-
Confidence 34689999999999999999999887531 1134567998888889999999999999877665 455555566665
Q ss_pred hhhcCCC-cEEEEEeCCCCc-c--cccccCCCCCCCCCCcEEEEEeCC
Q 038205 218 FSESKSR-KILVILDDVWKE-L--DLETIGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 218 ~~~l~~k-r~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~IivTTr~ 261 (375)
.+... ..+||+||++.. . .++.+..... ..+.++|+..+.
T Consensus 82 --~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 --ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55443 369999999764 2 2333322122 566788887765
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.80 E-value=6.6e-08 Score=94.31 Aligned_cols=176 Identities=19% Similarity=0.147 Sum_probs=106.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhcC----CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKD----STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 193 (375)
|..+..++|.+..++.|..|+..- ..+.+.|+|++|+||||+|+.+++... |.. +-++.+...+ ...+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~-~~~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRT-ADVIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEccccccc-HHHHHH
Confidence 666778899999999999998531 267899999999999999999999874 222 2223332211 122222
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhcC-CCcEEEEEeCCCCccc------ccccCCCCCCCCCCcEEEEEeCCh-hHH
Q 038205 194 LVKSLGWALTEKDEEDRADRLRLMFSESK-SRKILVILDDVWKELD------LETIGIPVGDRDNCCKILLTTRLQ-QVC 265 (375)
Q Consensus 194 i~~~l~~~~~~~~~~~~~~~l~~~~~~l~-~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~IivTTr~~-~v~ 265 (375)
++...... . .+. .++-+||||+++.... +..+...+. ..+..||+|+.+. ...
T Consensus 84 ~i~~~~~~--------------~---sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 84 VAGEAATS--------------G---SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHhhcc--------------C---cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 22221100 0 222 3678999999976421 333322222 2234566666432 111
Q ss_pred --hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 266 --YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 266 --~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
........+.+.+++..+....+.+.+....... -.+....|++.++|-.-.+
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1122335788999999999998888764222111 2466788888888766544
No 46
>PF13173 AAA_14: AAA domain
Probab=98.79 E-value=1.3e-08 Score=80.95 Aligned_cols=120 Identities=23% Similarity=0.154 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
.+++.|.|+.|+||||++++++.+.. ....+++++........... .+..+.+.+ ...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~---~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLE---LIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHH---hhc
Confidence 46899999999999999999998765 22344555443321100000 001122222 333
Q ss_pred CCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhh------hCCCCcccCCCCChHHH
Q 038205 223 SRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYR------MGCDPRIKLDALDQAEG 284 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~------~~~~~~~~l~~L~~~e~ 284 (375)
.++.+++||++....+|......+....+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999999888887765555555566899999987655432 12225678888887663
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.78 E-value=6.1e-08 Score=78.39 Aligned_cols=122 Identities=20% Similarity=0.119 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCC
Q 038205 126 TTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEK 205 (375)
Q Consensus 126 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 205 (375)
|++..+..+...+.....+.+.|+|++|+|||++++.+++..... -..++++..............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 677888889888877677899999999999999999999987522 2334555544332211111111000
Q ss_pred CHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc-----ccccccCCCCCC---CCCCcEEEEEeCChh
Q 038205 206 DEEDRADRLRLMFSESKSRKILVILDDVWKE-----LDLETIGIPVGD---RDNCCKILLTTRLQQ 263 (375)
Q Consensus 206 ~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~IivTTr~~~ 263 (375)
........ ....++.+|++||++.. ..+..+...+.. ...+..+|+||....
T Consensus 72 ---~~~~~~~~---~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---LVRLLFEL---AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---hHhHHHHh---hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00001111 34457789999999853 122222122211 135678888888653
No 48
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2.8e-07 Score=86.83 Aligned_cols=175 Identities=14% Similarity=0.166 Sum_probs=103.2
Q ss_pred CCCccchHHHHHHHHHHHhcCC----------CcEEEEEcCCCchHHHHHHHHHhhhhhcC------------------C
Q 038205 121 FSSFETTESACNQIIEALKKDS----------TKMVGLHGLGGVGKTTLAKFVGNQLRQNN------------------I 172 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~ 172 (375)
+...+|.+..++.|.+++..+. .+.+.++||+|+|||++|+.+.+...-.. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4567799999999999987653 56788999999999999999877543110 0
Q ss_pred ccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCC
Q 038205 173 FDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDR 249 (375)
Q Consensus 173 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~ 249 (375)
++...++.... .....++....+.... ....+++-++++|+++.. .....+...+...
T Consensus 84 hpD~~~i~~~~-------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 84 HPDVRVVAPEG-------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCCEEEecccc-------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11111111100 0011122222221110 122345668889999754 2223333333333
Q ss_pred CCCcEEEEEeCC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 250 DNCCKILLTTRL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 250 ~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
.+++.+|++|.+ ..+...+ +....+.+.+++.++..+.+.+..+. + .+.+..++..++|.|....
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHH
Confidence 345666666655 3443332 23368899999999999888754331 1 3557788999999997543
No 49
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.8e-07 Score=88.98 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=111.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCc-EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE-ecCCCChhHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTK-MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT-VSQDPSIINVQSELV 195 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 195 (375)
|..+..++|.+..++.|..++..+..+ .+.++||.|+||||+|..+.+...-........|.. .......-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 667788899999999999999877654 588999999999999999988764211111100110 000000001111111
Q ss_pred HHhCCCC------CCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe-CChhHH
Q 038205 196 KSLGWAL------TEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT-RLQQVC 265 (375)
Q Consensus 196 ~~l~~~~------~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-r~~~v~ 265 (375)
....... .....++..+....+. .-..+.+-++|+|+++.. ..++.+...+..-.+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1100000 0011222222221110 012345668899998754 34555544444333455666555 434443
Q ss_pred hhhC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 266 YRMG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 266 ~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
..+. ....+++.+++.++....+...+.... ..--.+.++.|++.++|.+--+
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 3221 225788999999999988887764221 1122567788999999977533
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=7.8e-08 Score=97.03 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=100.7
Q ss_pred CCCCCCccchHHHHH---HHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESACN---QIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+..++|.+..+. .+.+.+..+....+.++|++|+||||||+.+++... ..| +.++.........+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f-----~~lna~~~~i~dir-- 94 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF-----SSLNAVLAGVKDLR-- 94 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc-----eeehhhhhhhHHHH--
Confidence 667778899988774 566677777777889999999999999999998764 223 11111000000001
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEE--eCChh--HHh-h
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLT--TRLQQ--VCY-R 267 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivT--Tr~~~--v~~-~ 267 (375)
.......... ...+++.+|+|||++.. ...+.+...+ ..|+.++++ |.+.. +.. .
T Consensus 95 --------------~~i~~a~~~l-~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 95 --------------AEVDRAKERL-ERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred --------------HHHHHHHHHh-hhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHh
Confidence 1111111100 11246779999999754 3344443222 234445543 33321 111 1
Q ss_pred hCCCCcccCCCCChHHHHHHHHHHcCC------CCCCCCchHHHHHHHHHcCCchh
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKHAGI------DVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~~~glPl 317 (375)
.+....+.+.+|+.++...++.+.+.. .....-..+..+.|++.+.|..-
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 222357899999999999999886641 11112224566888888887644
No 51
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.1e-07 Score=91.23 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=107.3
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcC-------------------CccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNN-------------------IFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 177 (375)
|..+..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.....-.. .|...+
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 56678889999999999999987665 4568999999999999999987764210 111122
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 254 (375)
++..+.. ...++....+.... .-..+++-++|+|+++... ....+...+..-...+.
T Consensus 92 ei~~~~~--------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 92 EVDAASN--------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred Eeecccc--------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 2211111 11122222221110 0223567799999997542 34444333433334456
Q ss_pred EEEEeCC-hhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 255 ILLTTRL-QQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 255 IivTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
+|++|.+ ..+... ......+++.+++.++....+.+.+...... ........|++.++|.+-
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 6665544 333221 1222578999999999998888766422211 224556888999999775
No 52
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.73 E-value=4.9e-08 Score=86.12 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC--CChhHHHHHHHHHhCCCCCCCCHHH---HHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD--PSIINVQSELVKSLGWALTEKDEED---RADRLR 215 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~l~ 215 (375)
...+.++|+|++|+|||||++.+++..... +|+.++|+.+..+ .++.++++.+...+-......+... ....+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999998765 8999999997766 7888899888332211111112211 111111
Q ss_pred HHhh--hcCCCcEEEEEeCCCCc
Q 038205 216 LMFS--ESKSRKILVILDDVWKE 236 (375)
Q Consensus 216 ~~~~--~l~~kr~LlVlDdv~~~ 236 (375)
.... .-.+++.+|++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 1111 23479999999998643
No 53
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=3.3e-07 Score=89.68 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=110.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|++..++.|.+++..+. .+.+.++||.|+||||+|+.+.+...-.+ |.... ....-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 6777889999999999999987755 45788999999999999999988764211 11100 0001111111111
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe-CChhHHh
Q 038205 197 SLGWA------LTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT-RLQQVCY 266 (375)
Q Consensus 197 ~l~~~------~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-r~~~v~~ 266 (375)
..... ......++....+..... ...+++-++|+|+++.. ..+..+...+..-...+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 10000 000111222222211100 12234457999998753 33444433333222345555544 4444432
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHHHH
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAVGS 324 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i~~ 324 (375)
. ......+++.+++.++....+...+...... --...+..+++.++|.|- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 2334678999999999998888866422111 114567888999999664 4444443
No 54
>PRK09087 hypothetical protein; Validated
Probab=98.72 E-value=2.1e-07 Score=81.33 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=96.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
..+.+.|+|++|+|||+|++.++..... .+++.. .+..++.. .+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~-----------------------~~ 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAAN-----------------------AA 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHH-----------------------hh
Confidence 3567999999999999999988875431 122211 01111111 11
Q ss_pred CCCcEEEEEeCCCCcc-cccccCCCCCC-CCCCcEEEEEeCC---------hhHHhhhCCCCcccCCCCChHHHHHHHHH
Q 038205 222 KSRKILVILDDVWKEL-DLETIGIPVGD-RDNCCKILLTTRL---------QQVCYRMGCDPRIKLDALDQAEGLDLLRK 290 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 290 (375)
.+ -+|++||++... .-..+...+.. ...|..+|+|++. +.+.+++....++++++++.++-.+++.+
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 11 278889996431 11112111211 1346778888873 44555566678899999999999999998
Q ss_pred HcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHh------cC-C-CHHHHHHHHHH
Q 038205 291 HAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSAL------RL-R-TADEWNVALDK 340 (375)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L------~~-~-~~~~w~~~l~~ 340 (375)
.+.... ..--+++.+-|++.+.|.+-++..+-..| .. + +....+++++.
T Consensus 165 ~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 165 LFADRQ-LYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHcC-CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 885322 11226778888888888877765432222 11 2 55566666654
No 55
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=3.7e-07 Score=89.74 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=113.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..+..|.+.+..+. .+.+.++|+.|+||||+|+.+.+...-...... ..++.-...+.+..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 5667788899999999998887765 578889999999999999999877642110000 00000001111111
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHH
Q 038205 197 SLGWA------LTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVC 265 (375)
Q Consensus 197 ~l~~~------~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~ 265 (375)
..... ......++... +.+... ...+++-++|+|+++.. .....|...+..-.....+|++|.+ ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00000 00011112111 222111 22456679999999754 3344444444322234556665544 4443
Q ss_pred hh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch-hHHHHHHHHh
Q 038205 266 YR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP-LAIKAVGSAL 326 (375)
Q Consensus 266 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~i~~~L 326 (375)
.. ......+++.+++.++....+.+.+.... ..-..+.++.|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 22235789999999999999887664222 1122566788999999865 5766665443
No 56
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=3.2e-07 Score=93.79 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=108.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCc---------------------cE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIF---------------------DK 175 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~~ 175 (375)
|..+..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.+.+.-.... ..
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 56677889999999999999987665 458899999999999999998776411000 00
Q ss_pred EEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHH-hhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCC
Q 038205 176 VGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLM-FSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNC 252 (375)
Q Consensus 176 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 252 (375)
++++..... ...++..+..... +.-..+++-++|||+++.. ...+.|...+..-...
T Consensus 91 v~eidaas~--------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 91 VTEIDAASH--------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred EEEeccccc--------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 111111111 1112222211111 1123456668999999754 3344444444333344
Q ss_pred cEEEEEeC-ChhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 253 CKILLTTR-LQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 253 s~IivTTr-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
+.+|++|. ...+... ......+++..++.++....+.+.+...... ........|++.++|.+.
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 56665554 4444433 2334678999999999998888776422211 124556778888998774
No 57
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.70 E-value=9.5e-08 Score=80.90 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CccchHHHHHHHHHHHh---cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCc
Q 038205 123 SFETTESACNQIIEALK---KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF 173 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 173 (375)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++.++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 47899999999999983 3457899999999999999999999988866333
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.69 E-value=4.5e-07 Score=79.78 Aligned_cols=169 Identities=20% Similarity=0.146 Sum_probs=99.3
Q ss_pred CCCccchHH-HHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhC
Q 038205 121 FSSFETTES-ACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLG 199 (375)
Q Consensus 121 ~~~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 199 (375)
+..|++... .+..+...........+.|+|++|+|||+|++.+++.....+ ..+.+++..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhHH----
Confidence 455654433 334333333333345799999999999999999998866432 2445554322 111110
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---cccc-cCCCCCC-CCCCcEEEEEeCC---------hhHH
Q 038205 200 WALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---DLET-IGIPVGD-RDNCCKILLTTRL---------QQVC 265 (375)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~IivTTr~---------~~v~ 265 (375)
..+. .+ .+.-+||+||+.... .|.. +...+.. ..+|..+|+|++. +.+.
T Consensus 86 ------------~~~~----~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ------------DALE----AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ------------HHHH----HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1111 22 123489999997442 2222 2111111 1245679999984 2333
Q ss_pred hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 266 YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 266 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+++.....+++.+++.++...++.+++.... -.--.+...-|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 4444456889999999999999998764322 1222567788888888665554
No 59
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.69 E-value=7.9e-07 Score=75.66 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcC-------------------CccEEEEEEecCCCChhHHHH
Q 038205 133 QIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNN-------------------IFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 133 ~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~ 192 (375)
.|.+.+..+.. +.+.++|+.|+||||+|+.+.....-.. .+....++.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-------- 74 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-------- 74 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC--------
Confidence 45555655554 6799999999999999999987764321 1111122211111
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCCh-hHHhh-
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQ-QVCYR- 267 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~-~v~~~- 267 (375)
....++....+..... ...+.+-++|+|+++.. ...+.+...+......+.+|++|++. .+...
T Consensus 75 -----------~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 75 -----------SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -----------cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 0111222211111100 22356678999998754 23444444444334456677766643 22222
Q ss_pred hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
......+.+.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g--i-~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G--I-S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C--C-C---HHHHHHHHHHcCCCccc
Confidence 122357899999999999988876 2 1 1 46688999999998853
No 60
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.69 E-value=8.5e-07 Score=88.86 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=121.4
Q ss_pred CCccchHHHHHHHHHHHhc----C-CCcEEEEEcCCCchHHHHHHHHHhhhhhc---CCcc--EEEEEEecCCCChhHHH
Q 038205 122 SSFETTESACNQIIEALKK----D-STKMVGLHGLGGVGKTTLAKFVGNQLRQN---NIFD--KVGIATVSQDPSIINVQ 191 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~ 191 (375)
..+.+|++++++|...|.. . ...++.|+|++|+|||++++.|.+..... .... .++++....-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 3467999999999988743 2 23567899999999999999998876432 1222 24566666666788888
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC---CCcEEEEEeCCCCccc--ccccCCCCC-CCCCCcEEEE--EeCChh
Q 038205 192 SELVKSLGWALTEKDEEDRADRLRLMFSESK---SRKILVILDDVWKELD--LETIGIPVG-DRDNCCKILL--TTRLQQ 263 (375)
Q Consensus 192 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~---~kr~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~Iiv--TTr~~~ 263 (375)
..|..++........ ......+..++..+. ....+||||+++.... -+.|...+. ....+++|++ +|.+.+
T Consensus 835 qvI~qqL~g~~P~~G-lsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNA-LNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCCCcc-ccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 888888843322211 112223334333442 2346999999975421 011111111 1123445443 343322
Q ss_pred H--------HhhhCCCCcccCCCCChHHHHHHHHHHcCCCC--CCC-CchHHHHHHHHHcCCchhHHHHHHHHhcC----
Q 038205 264 V--------CYRMGCDPRIKLDALDQAEGLDLLRKHAGIDV--ADK-TMTDVSKRVADECKGLPLAIKAVGSALRL---- 328 (375)
Q Consensus 264 v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~-~~~~~~~~i~~~~~glPlai~~i~~~L~~---- 328 (375)
+ ...++ ...+.+.|++.++..+++..++.... ..+ -++-+++.++...|-.=.||.++-.....
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 2 11222 13477899999999999999875311 111 12223333333334445566555444321
Q ss_pred C-CHHHHHHHHHHhhh
Q 038205 329 R-TADEWNVALDKLQN 343 (375)
Q Consensus 329 ~-~~~~w~~~l~~l~~ 343 (375)
+ +.+.-..+.+.+..
T Consensus 993 kVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 993 KIVPRDITEATNQLFD 1008 (1164)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 1 34455555554433
No 61
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.68 E-value=9.1e-08 Score=84.18 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=114.8
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEE-EEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGI-ATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~ 196 (375)
|+.+..+.|.+..+.-|.+.+.....+....+||+|.|||+.|..+....--.+.|.+++- .++|...... +.+.=..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik 110 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIK 110 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhc
Confidence 6777888999999999999998877889999999999999999999887766566766542 2333322211 1111000
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhcCCCc-EEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHhhh-CCC
Q 038205 197 SLGWALTEKDEEDRADRLRLMFSESKSRK-ILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCYRM-GCD 271 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~l~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~~-~~~ 271 (375)
.+ ........... .-...+ -++|||+++.. +.|..+...+......++.|+.+.. ..+.... ..-
T Consensus 111 ~f---------akl~~~~~~~~-~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 111 NF---------AKLTVLLKRSD-GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred CH---------HHHhhcccccc-CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 00 00000000000 001123 48899999865 5677776666555555666655544 2222222 122
Q ss_pred CcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc
Q 038205 272 PRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 272 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 315 (375)
..++..+|..++...-++..+..+..+-+ ....+.|++.++|-
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGD 223 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCc
Confidence 46889999999999888888754332322 45667888888875
No 62
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7.8e-07 Score=83.97 Aligned_cols=180 Identities=14% Similarity=0.183 Sum_probs=104.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhc------CCccEEEEEEecCCC-ChhH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQN------NIFDKVGIATVSQDP-SIIN 189 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~-~~~~ 189 (375)
|..+..++|.+..++.+...+..+. .+.+.++|++|+||||+|+.+.+..... ..|...+. .+.... ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 91 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-ELDAASNNSVD 91 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-EeccccCCCHH
Confidence 6677888999999999999998765 4588899999999999999997776431 11111111 111000 0011
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEe-CChhHHh
Q 038205 190 VQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTT-RLQQVCY 266 (375)
Q Consensus 190 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTT-r~~~v~~ 266 (375)
..+++++.+. . ....+++-++++|+++... .+..+...+......+.+|++| ....+..
T Consensus 92 ~i~~l~~~~~----------------~--~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 DIRNLIDQVR----------------I--PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred HHHHHHHHHh----------------h--ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1112222110 0 0223456689999986542 2444432232222334555554 3333322
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
. ......+++.++++++....+.+.+...... --.+..+.+++.++|.+-
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALR 204 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHH
Confidence 2 2233578899999999998888766422211 124667888888888655
No 63
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=4.8e-07 Score=89.55 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=112.3
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccE--EEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDK--VGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i 194 (375)
|..+..++|.+..++.|.+++..++ .+.+.++|+.|+||||+|+.+.+...-...... ..+- ....-.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 6677889999999999999998776 457899999999999999999887642111000 0000 00000111111
Q ss_pred HHHhCCC------CCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe-CChhH
Q 038205 195 VKSLGWA------LTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT-RLQQV 264 (375)
Q Consensus 195 ~~~l~~~------~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-r~~~v 264 (375)
......+ ......++..+.+.... .-..+++-++|+|+++.. ...+.+...+..-...+++|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 1111110 01111222222222110 012345668999998754 23444444443333456666555 43444
Q ss_pred Hhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 265 CYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 265 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
...+ .....+.+.+++.++....+.+.+...... --.+....|++.++|.+.-+.
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 3222 223578999999999999998876422211 124667888999999887553
No 64
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9.2e-07 Score=87.12 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCc-EEEEEcCCCchHHHHHHHHHhhhhhcCCc---------------------cE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTK-MVGLHGLGGVGKTTLAKFVGNQLRQNNIF---------------------DK 175 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~~ 175 (375)
|..+..++|.+..++.|..++..+... .+.++|+.|+||||+|+.+.+...-.... ..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 566788899999999999999887654 57899999999999999998765421100 00
Q ss_pred EEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCC
Q 038205 176 VGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNC 252 (375)
Q Consensus 176 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 252 (375)
++.+..+.. ...++..+...... .-..+++-++|+|+++.. ...+.+...+..-...
T Consensus 89 vieidaas~--------------------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 89 VVELDAASH--------------------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred EEEeccccc--------------------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 111111111 11122211111110 012345669999998754 3444444444333334
Q ss_pred cEEEE-EeCChhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHH
Q 038205 253 CKILL-TTRLQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAV 322 (375)
Q Consensus 253 s~Iiv-TTr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i 322 (375)
+.+|+ ||....+... ......+++.+++.++..+.+.+.+...... -.......|++.++|.+- ++..+
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555 4444444433 3334678999999999988888766422211 124556778888888764 44443
No 65
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.63 E-value=7.1e-07 Score=92.27 Aligned_cols=181 Identities=12% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC----ccEEEE-EEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI----FDKVGI-ATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~ 192 (375)
|..+.+++||+.++.+++..|......-+.++|++|+||||+|+.+++....... ....+| +..+.-
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l-------- 254 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL-------- 254 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh--------
Confidence 6677889999999999999987776667789999999999999999988753211 122232 221110
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhc--CCCcEEEEEeCCCCcc-------ccc--ccCCCCCCCCCCcEEEEEeCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSES--KSRKILVILDDVWKEL-------DLE--TIGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~-------~~~--~l~~~l~~~~~gs~IivTTr~ 261 (375)
. .......+....++.+++.+ .+++.+|++|+++... ..+ .+..+... ....++|-||..
T Consensus 255 --~------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~ 325 (852)
T TIGR03345 255 --Q------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTW 325 (852)
T ss_pred --h------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCH
Confidence 0 00011122223333333333 2478999999986431 122 12122211 123566666665
Q ss_pred hhHHh-------hhCCCCcccCCCCChHHHHHHHHHHcC---CCCCCCCchHHHHHHHHHcCCc
Q 038205 262 QQVCY-------RMGCDPRIKLDALDQAEGLDLLRKHAG---IDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 262 ~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~gl 315 (375)
++... .......+.+.+++.++...++..... ......-..+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 43311 122335799999999999999764432 1111111244556666666544
No 66
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.7e-06 Score=84.00 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=105.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhc---C----------------CccEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQN---N----------------IFDKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~---~----------------~f~~~~ 177 (375)
|..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.++....-. . .+....
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 56677889999999999999987654 456789999999999999988765310 0 011112
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCc
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCC 253 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 253 (375)
.+..+.. ...++.. .+....+ ...+++-++|+|+++.. ...+.+...+....+.+
T Consensus 92 eidaas~--------------------~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 92 EIDAASN--------------------RGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred EEeCccC--------------------CCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 2211111 1111111 1222111 22456779999998754 23344433333323344
Q ss_pred EEEEEe-CChhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 254 KILLTT-RLQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 254 ~IivTT-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
.+|++| +...+... ......+.+.+++.++....+.+.+...... --...+..|++.++|.+-.+
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 555554 43333322 2233578899999999998888766422111 12456677888888876544
No 67
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.2e-06 Score=86.82 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=108.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE-ecCCCChhHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT-VSQDPSIINVQSELV 195 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 195 (375)
|..+..++|.+..+..|.+.+..+.. +.+.++|+.|+||||+|+.+.+...-........|.. .......-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 66778889999999999998887664 4588999999999999999987764211111000110 000000001111111
Q ss_pred HHhCCC------CCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEe-CChhHH
Q 038205 196 KSLGWA------LTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTT-RLQQVC 265 (375)
Q Consensus 196 ~~l~~~------~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTT-r~~~v~ 265 (375)
..-..+ ......++....+..+. .-..+.+-++|+|+++... ..+.+...+..-...+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 100000 00111223332222210 0123456688999987542 3444433343322345555444 444443
Q ss_pred hh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 266 YR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 266 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
.. ......+++.+++.++....+.+.+...... -..+.++.|++.++|.+-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 32 3334678999999999888887765321111 125667889999999555
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.6e-06 Score=86.49 Aligned_cols=195 Identities=14% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.+...-...... ....+.-...+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhc
Confidence 56677889999999999998877654 56789999999999999999877642110000 000111122222222
Q ss_pred HhCCCC------CCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHh
Q 038205 197 SLGWAL------TEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCY 266 (375)
Q Consensus 197 ~l~~~~------~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~ 266 (375)
...... .....++..+.+..... ...+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 211110 11112222222211100 12346679999998754 3344443333333344566665543 33332
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
. ......+.+.+++..+....+.+.+...... --.+.+..|++.++|.+..+
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDA 218 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 2 2223568899999999998888776432211 12466788999999988644
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.60 E-value=3.6e-07 Score=86.05 Aligned_cols=171 Identities=20% Similarity=0.228 Sum_probs=97.5
Q ss_pred CCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|.++.+++|.+.+.. ..++-+.++|++|+|||++|+.+++.... .| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch----H
Confidence 3467888888888887631 12456999999999999999999997753 22 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc----------------cccccCCCCC--CC
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL----------------DLETIGIPVG--DR 249 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 249 (375)
.+.... ++ .....++.+++ .-...+.+|+|||++... .+..+...+. ..
T Consensus 191 ~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111110 10 11112222222 223467899999986431 1111111111 11
Q ss_pred CCCcEEEEEeCChhHH-----hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 250 DNCCKILLTTRLQQVC-----YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 250 ~~gs~IivTTr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
..+..||.||...... ........+.+...+.++..++|+.+.......++. ....+++.+.|..-
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~sg 329 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGASG 329 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCCH
Confidence 2457788888754322 111223578899999999999999887533222211 13567778877643
No 70
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.60 E-value=1.9e-07 Score=86.22 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=63.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC--ChhHHHHHHHHHhCCCCCCCCHH-HHH--HHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP--SIINVQSELVKSLGWALTEKDEE-DRA--DRLR 215 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~-~~~--~~l~ 215 (375)
+..+..+|+|++|+|||||++.+++..... +|+.++|+.+.+.. ++.++++.+.-.+-....+.+.. ... ....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 457889999999999999999999999875 89999999998876 67777777753221111112221 111 1111
Q ss_pred HHhhh--cCCCcEEEEEeCCCC
Q 038205 216 LMFSE--SKSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~--l~~kr~LlVlDdv~~ 235 (375)
+..++ ..++.++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 11112 367999999999863
No 71
>PTZ00202 tuzin; Provisional
Probab=98.59 E-value=9.3e-07 Score=82.32 Aligned_cols=166 Identities=12% Similarity=0.171 Sum_probs=102.0
Q ss_pred CCCCCCCccchHHHHHHHHHHHhcC---CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHH
Q 038205 117 IPRFFSSFETTESACNQIIEALKKD---STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 117 ~~~~~~~~~gr~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 193 (375)
.|.....|+||+.++..|...|... .++++.|.|++|+|||||++.+..... + ..++.-+. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHH
Confidence 4777889999999999999988542 356899999999999999999997654 1 12222222 67999999
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhh--hcC-CCcEEEEEeC--CCCcc-cccccCCCCCCCCCCcEEEEEeCChhHHhh
Q 038205 194 LVKSLGWALTEKDEEDRADRLRLMFS--ESK-SRKILVILDD--VWKEL-DLETIGIPVGDRDNCCKILLTTRLQQVCYR 267 (375)
Q Consensus 194 i~~~l~~~~~~~~~~~~~~~l~~~~~--~l~-~kr~LlVlDd--v~~~~-~~~~l~~~l~~~~~gs~IivTTr~~~v~~~ 267 (375)
++..|+.+.. ....++...+.+.+. ... +++.+||+-= -.+.. ...+. ..+.....-|+|++---.+.+...
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchh
Confidence 9999997322 222344444444222 123 6677777652 11111 01111 122333445677765544433211
Q ss_pred ---hCCCCcccCCCCChHHHHHHHHHHc
Q 038205 268 ---MGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 268 ---~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
+.....|.+.+++.++|..+-....
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1222567788888888887766543
No 72
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.58 E-value=1.1e-06 Score=83.27 Aligned_cols=198 Identities=19% Similarity=0.245 Sum_probs=108.0
Q ss_pred CccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhH
Q 038205 123 SFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIIN 189 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 189 (375)
.+.|+++.+++|.+.+.. ..++-|.++|++|+|||++|+.+++..... |+.++. ..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~----~~ 200 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG----SE 200 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----HH
Confidence 355888888888876521 235678999999999999999999876521 222211 11
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc------------c----ccccCCCCCC--CC
Q 038205 190 VQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL------------D----LETIGIPVGD--RD 250 (375)
Q Consensus 190 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~--~~ 250 (375)
+ .... ...+. ..++.+++ .-...+.+|+|||++... . +..+...+.. ..
T Consensus 201 l----~~~~----~g~~~----~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 201 L----VQKF----IGEGA----RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred H----hHhh----ccchH----HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1 1111 00111 12222222 223467899999987431 0 1111111111 12
Q ss_pred CCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHH--
Q 038205 251 NCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAV-- 322 (375)
Q Consensus 251 ~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i-- 322 (375)
.+..||.||...+.... . .....+.+.+.+.++-.++|+.++......... ....+++.+.|.-- -+..+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCCHHHHHHHHH
Confidence 35677777775433221 1 123578999999999999999887532222211 13556677766542 22221
Q ss_pred -HHHh--cC---C-CHHHHHHHHHHhhhcc
Q 038205 323 -GSAL--RL---R-TADEWNVALDKLQNAK 345 (375)
Q Consensus 323 -~~~L--~~---~-~~~~w~~~l~~l~~~~ 345 (375)
|++. +. . +.+....+++....+.
T Consensus 347 eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 347 EAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 2222 21 1 5667777777765543
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.56 E-value=1.4e-06 Score=76.78 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=88.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
..+.|+|++|+|||.|++.+++.....+ ..++|++... +... .. .+.+ .+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~~------~~~~-------------~~----~~~~---~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLAE------LLDR-------------GP----ELLD---NLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHHH------HHhh-------------hH----HHHH---hhhh
Confidence 5789999999999999999988765332 3455665421 1110 01 1111 2222
Q ss_pred CcEEEEEeCCCCc---ccccc-cCCCCCC-CCCCcEEEEEeCCh---------hHHhhhCCCCcccCCCCChHHHHHHHH
Q 038205 224 RKILVILDDVWKE---LDLET-IGIPVGD-RDNCCKILLTTRLQ---------QVCYRMGCDPRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 224 kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 289 (375)
- -+||+||+... ..|.. +...+.. ...|..+|+|++.. .+.+++.....+++.+++.++...++.
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 2 27889999733 24432 2222221 23456788888742 223344445678999999999999999
Q ss_pred HHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 290 KHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
.++.... -.--+++.+-|++.+.|..-.+..
T Consensus 177 ~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 177 LRASRRG-LHLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 6654221 111256777788888776555543
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.56 E-value=8.2e-07 Score=77.95 Aligned_cols=173 Identities=15% Similarity=0.099 Sum_probs=96.4
Q ss_pred CCCCcc-ch-HHHHHHHHHHHhc-CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 120 FFSSFE-TT-ESACNQIIEALKK-DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 120 ~~~~~~-gr-~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
.+..|+ |. +.....+..+... ...+.+.|+|++|+|||+||+.+++.....+ . ...+++..... ..
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~------~~--- 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL------LA--- 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH------HH---
Confidence 345555 33 3444555554442 3456889999999999999999998764322 1 23333322110 00
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc--ccccCCCCCC-CCCCc-EEEEEeCChhH--------
Q 038205 197 SLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD--LETIGIPVGD-RDNCC-KILLTTRLQQV-------- 264 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs-~IivTTr~~~v-------- 264 (375)
+ . ... ..-+|++||++.... -..+...+.. ...+. .+|+|++....
T Consensus 85 -~-----------------~---~~~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 -F-----------------D---FDP-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred -H-----------------h---hcc-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 0 122 234788999975422 1122222211 12233 36666654322
Q ss_pred HhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHh
Q 038205 265 CYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSAL 326 (375)
Q Consensus 265 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L 326 (375)
.+.+.....+++.+++.++-..++.+.+.... ..--++..+.+++.+.|.|..+..+-..|
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11333346789999999887777776543211 11225677888888999998876665443
No 75
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.56 E-value=4e-06 Score=74.83 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhcC---CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCc----cEEEEEEecCCCChhHHHHHHHHHhCC
Q 038205 128 ESACNQIIEALKKD---STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF----DKVGIATVSQDPSIINVQSELVKSLGW 200 (375)
Q Consensus 128 ~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 200 (375)
.+.+++|.+++..+ ..+-+.|+|.+|.|||++++.+...+.....- -.++.+..+..++...+...|+..++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 45566666666543 46789999999999999999999876542111 136677788899999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHhhhcCCCcEEEEEeCCCCc---------ccccccCCCCCCCCCCcEEEEEeCC--------h
Q 038205 201 ALTEKD-EEDRADRLRLMFSESKSRKILVILDDVWKE---------LDLETIGIPVGDRDNCCKILLTTRL--------Q 262 (375)
Q Consensus 201 ~~~~~~-~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~---------~~~~~l~~~l~~~~~gs~IivTTr~--------~ 262 (375)
+..... ..........++..+ +--+||+|++.+. ..+..+ ..+...-.-+-|.+-|+. .
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~--~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRL--GVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCH
Confidence 775443 333344444433333 4449999999763 111111 112221222345555553 3
Q ss_pred hHHhhhCCCCcccCCCCC-hHHHHHHHHHHcC----CCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 263 QVCYRMGCDPRIKLDALD-QAEGLDLLRKHAG----IDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 263 ~v~~~~~~~~~~~l~~L~-~~e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
+++..+ ..+.+..-. .++...|+..... .....-...++++.|...++|+.--+..+
T Consensus 200 QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 200 QLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 333332 334444433 3455556554332 22223344788999999999998766544
No 76
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=2.2e-06 Score=85.70 Aligned_cols=190 Identities=15% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCC---c-cEEE-EEEecCCCChhHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNI---F-DKVG-IATVSQDPSIINVQ 191 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~-wv~~~~~~~~~~~~ 191 (375)
|..+...+|.+..+..|..++..++ .+.+.++||.|+||||+|+.++...--.+. + .|.. -.+....++...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie-- 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE-- 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE--
Confidence 6667788999999999999998765 456789999999999999999876532110 0 0000 000000000000
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEE-EEeCChhHHhh
Q 038205 192 SELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKIL-LTTRLQQVCYR 267 (375)
Q Consensus 192 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTr~~~v~~~ 267 (375)
+. .......++....+..+.. ...+++-++|+|+++.. ..+..+...+..-...+.+| +|+....+...
T Consensus 92 ------id-aasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 92 ------MD-AASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------Ee-ccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00 0000111222222111100 22356679999998754 33444433333222334544 45554555432
Q ss_pred -hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 268 -MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 268 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
......+++.+++.++....+...+....... -...+..|++.++|.+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR 214 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLR 214 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 33336789999999999988887653221111 14557788889988664
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.55 E-value=6.7e-07 Score=80.20 Aligned_cols=133 Identities=14% Similarity=0.244 Sum_probs=69.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...+.++|++|+||||+|+.+++............++.++.. ++. ... ...........+. ...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~----~~~----~g~~~~~~~~~~~----~a~ 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLV----GEY----IGHTAQKTREVIK----KAL 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhh----hhh----ccchHHHHHHHHH----hcc
Confidence 456789999999999999999887643221111122332221 111 110 0111122222222 222
Q ss_pred CCcEEEEEeCCCCcc----------cccccCCCCCCCCCCcEEEEEeCChhHHh------h-hCC-CCcccCCCCChHHH
Q 038205 223 SRKILVILDDVWKEL----------DLETIGIPVGDRDNCCKILLTTRLQQVCY------R-MGC-DPRIKLDALDQAEG 284 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~IivTTr~~~v~~------~-~~~-~~~~~l~~L~~~e~ 284 (375)
..+|++|+++... ..+.+...+........+|+++....... . ... ...+.+++++.++.
T Consensus 106 --~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 --GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred --CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 2489999997521 22333333333333345556654332211 1 111 24588999999999
Q ss_pred HHHHHHHcC
Q 038205 285 LDLLRKHAG 293 (375)
Q Consensus 285 ~~Lf~~~~~ 293 (375)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999998775
No 78
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.1e-06 Score=84.43 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=108.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhh---------------------cCCccE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQ---------------------NNIFDK 175 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~ 175 (375)
|..+..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.....- ..+|+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 56677889999999999999987764 45889999999999999988776531 112221
Q ss_pred EEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCC
Q 038205 176 VGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNC 252 (375)
Q Consensus 176 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 252 (375)
. .+...... ..++....+..... -..+++-++|+|+++.. ..++.+...+..-...
T Consensus 93 ~-~ld~~~~~--------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 93 H-ELDAASNN--------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred E-EecccccC--------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 1 11111111 11222222211100 12345668899998754 2344444444332334
Q ss_pred cEEEEEe-CChhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 253 CKILLTT-RLQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 253 s~IivTT-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+.+|++| ....+... ......+++.+++.++....+.+.+...... --...+..|++.++|.+--+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 5655544 44444433 2333678999999999999888766432211 11456788899999866533
No 79
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=4.4e-06 Score=83.35 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=109.3
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+...+|.+..+..|..++..+. .+.+.++|+.|+||||+|+.+++...-...... .......-...+.+..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAA 86 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhc
Confidence 5667788899999999999988765 467889999999999999999887642111000 0001111112222222
Q ss_pred HhCCCC------CCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHh
Q 038205 197 SLGWAL------TEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCY 266 (375)
Q Consensus 197 ~l~~~~------~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~ 266 (375)
...... .....+...+.+.... ....+++-++|+|+++.. ..+..+...+..-...+.+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 111100 1111222222222210 012345668999999754 3344444444332234555555543 33332
Q ss_pred hh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 267 RM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 267 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
.+ .....+++..++.++....+.+.+...... --.+.+..|++.++|.+..+
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 22 223567888999998888887766432111 11356788899999877644
No 80
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.6e-06 Score=80.36 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=106.8
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCc----cE--------------EEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIF----DK--------------VGI 178 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~--------------~~w 178 (375)
|..+...+|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+.+...-...- .+ .-|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 56678889999999999999987664 568899999999999999998765421000 00 001
Q ss_pred EEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 179 ATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 179 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
+.+.... ....++... +.+... ...+++-++|+|+++.. ...+.+...+......+.
T Consensus 93 ~~i~g~~------------------~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 93 LEIDGAS------------------HRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred EEeeccc------------------cCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 1111100 001111111 111110 22356778999998644 233333333333233556
Q ss_pred EEEEeCC-hhHHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHH
Q 038205 255 ILLTTRL-QQVCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAV 322 (375)
Q Consensus 255 IivTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i 322 (375)
+|++|.. ..+... ......+++.+++.++....+.+.+.... ..-..+.++.|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666543 333222 22335789999999999988887654221 11124567888999998664 44443
No 81
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.50 E-value=1.9e-06 Score=79.67 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+...+|.+...+.+..++..+. +..+.++|++|+||||+|+.+++.... ....++.+. .. ...++..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~-~~~i~~~-- 87 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CR-IDFVRNR-- 87 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-cc-HHHHHHH--
Confidence 6677888999999999999987765 456677999999999999999886531 112233222 11 1111111
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--c-cccccCCCCCCCCCCcEEEEEeCChhH-Hhh-hC
Q 038205 197 SLGWALTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--L-DLETIGIPVGDRDNCCKILLTTRLQQV-CYR-MG 269 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~-~~~~l~~~l~~~~~gs~IivTTr~~~v-~~~-~~ 269 (375)
+..+.. .+.+.+-++|+||++.. . ....+...+.....++++|+||..... ... .+
T Consensus 88 -----------------l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 88 -----------------LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred -----------------HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 111111 12245668999999754 1 112222222233456788888865321 111 12
Q ss_pred CCCcccCCCCChHHHHHHHHH
Q 038205 270 CDPRIKLDALDQAEGLDLLRK 290 (375)
Q Consensus 270 ~~~~~~l~~L~~~e~~~Lf~~ 290 (375)
....+.+...+.++...++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 224567777777777666543
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.50 E-value=1.5e-06 Score=75.54 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=90.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...+.|+|+.|+|||.|++.+++.......-..+++++ ...+...+...+.. .... .+.. .+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~----~~~~----~~~~---~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD----GEIE----EFKD---RLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT----TSHH----HHHH---HHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc----ccch----hhhh---hhh
Confidence 34689999999999999999999876543323455553 33455555544421 1111 1222 333
Q ss_pred CCcEEEEEeCCCCcc---cccc-cCCCCCC-CCCCcEEEEEeCC---------hhHHhhhCCCCcccCCCCChHHHHHHH
Q 038205 223 SRKILVILDDVWKEL---DLET-IGIPVGD-RDNCCKILLTTRL---------QQVCYRMGCDPRIKLDALDQAEGLDLL 288 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf 288 (375)
.-=+|++||++... .|.. +...+.. ...|.++|+|+.. +.+.+++.....+++.+++.++...++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 34488999997542 2221 1111111 1346689999964 344555666678999999999999999
Q ss_pred HHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 289 RKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
.+.+...... --+++.+-|++.+.+..-.+
T Consensus 176 ~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 176 QKKAKERGIE-LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHTT---S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHhCCC-CcHHHHHHHHHhhcCCHHHH
Confidence 9887522211 22556666777666544444
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=4.7e-06 Score=81.08 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=108.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCc-EEEEEcCCCchHHHHHHHHHhhhhhcC--C----------------c-cEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTK-MVGLHGLGGVGKTTLAKFVGNQLRQNN--I----------------F-DKVG 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~--~----------------f-~~~~ 177 (375)
|..+...+|.+.....|...+..+... .+.++|+.|+||||+|+.+.+..--.. . + ..++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 667788899999999999999877654 668999999999999998877653111 0 0 0111
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 178 IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 178 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
.+..... ...++..+.+.... .-..+++-++|+|+++.. .....+...+..-...++
T Consensus 90 eldaas~--------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~ 149 (535)
T PRK08451 90 EMDAASN--------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK 149 (535)
T ss_pred Eeccccc--------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceE
Confidence 1111111 11122222221110 012245669999999754 233444333333334567
Q ss_pred EEEEeCCh-hHHh-hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 255 ILLTTRLQ-QVCY-RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 255 IivTTr~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+|++|.+. .+.. .......+++.+++.++....+.+.+...... --.+.+..|++.++|.+--+
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHH
Confidence 77766553 2221 12223678999999999999888766422211 12566788889999888544
No 84
>PF14516 AAA_35: AAA-like domain
Probab=98.49 E-value=2e-05 Score=73.07 Aligned_cols=204 Identities=10% Similarity=0.061 Sum_probs=120.3
Q ss_pred CCCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-----CChhHHH
Q 038205 117 IPRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-----PSIINVQ 191 (375)
Q Consensus 117 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 191 (375)
+|.+..-.+.|...-+.+.+.+.++ ...+.|.||-.+|||+|...+.+..... .+. .++++...- .+....+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHH
Confidence 3444455678887777888777654 4699999999999999999999888764 233 345554431 2445455
Q ss_pred HHHHHH----hCCCCC--------CCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc---c-cccCCCC----C----
Q 038205 192 SELVKS----LGWALT--------EKDEEDRADRLRLMFSESKSRKILVILDDVWKELD---L-ETIGIPV----G---- 247 (375)
Q Consensus 192 ~~i~~~----l~~~~~--------~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~---~-~~l~~~l----~---- 247 (375)
+.++.. ++.... ..+.......+.+++-.-.+++.+|+||+++..-. + +.+...+ .
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 555544 433211 01112233334442212236899999999975321 1 1111111 0
Q ss_pred --CCCCCcEEEEEeC-ChhHH----hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHH
Q 038205 248 --DRDNCCKILLTTR-LQQVC----YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 248 --~~~~gs~IivTTr-~~~v~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
.-.+-+-|++.+. ..... +.++....+.|++|+.+|...|+.++-..- -....+.|...+||+|.-+.
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCHHHHH
Confidence 0001111222221 11111 112334678999999999999998764221 13338999999999999999
Q ss_pred HHHHHhcC
Q 038205 321 AVGSALRL 328 (375)
Q Consensus 321 ~i~~~L~~ 328 (375)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 99998864
No 85
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.47 E-value=9.2e-07 Score=82.10 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=65.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC--CChhHHHHHHHHHhCCCCCCCCHH---HHHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD--PSIINVQSELVKSLGWALTEKDEE---DRADRLR 215 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~l~ 215 (375)
...+.++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-....+.+.. .....+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 457789999999999999999999988764 7999899998866 688888888854332111111221 1222222
Q ss_pred HHhh--hcCCCcEEEEEeCCCC
Q 038205 216 LMFS--ESKSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~--~l~~kr~LlVlDdv~~ 235 (375)
+... .-.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 2211 2357999999999864
No 86
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=2.1e-06 Score=82.71 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=108.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
..+.|+|+.|+|||+|++.+++.......-..+++++ ...+...+...++.. ......+.+ ...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~---~~~- 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKN---EIC- 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHH---Hhc-
Confidence 4688999999999999999999765432222344443 345666666555321 011112222 333
Q ss_pred CcEEEEEeCCCCcc---cc-cccCCCCCC-CCCCcEEEEEeCC---------hhHHhhhCCCCcccCCCCChHHHHHHHH
Q 038205 224 RKILVILDDVWKEL---DL-ETIGIPVGD-RDNCCKILLTTRL---------QQVCYRMGCDPRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 224 kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 289 (375)
+.-+||+||+.... .+ +.+...+.. ...|..||+|+.. +.+..++....++.+++++.++-..++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34489999997532 11 222222211 1334578888763 2334445556778899999999999999
Q ss_pred HHcCCCCC-CCCchHHHHHHHHHcCCchhHHHHHHH------Hhc--CC--CHHHHHHHHHHh
Q 038205 290 KHAGIDVA-DKTMTDVSKRVADECKGLPLAIKAVGS------ALR--LR--TADEWNVALDKL 341 (375)
Q Consensus 290 ~~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~i~~------~L~--~~--~~~~w~~~l~~l 341 (375)
+.+..... ..--+++..-|++.++|.|-.+.-+-. ++. .+ +.+.-+.++..+
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 88753211 123367889999999999987754332 222 12 555566666554
No 87
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=5.2e-06 Score=82.46 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=106.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+.+...-.+.... ...+.-.....|..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 66778899999999999999987764 56789999999999999999877542110000 00000000001100
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe-CChhHHh
Q 038205 197 SLGWA------LTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT-RLQQVCY 266 (375)
Q Consensus 197 ~l~~~------~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-r~~~v~~ 266 (375)
.-... ......++..+.+.... .-..+++-++|+|+++.. .....+...+..-...+.+|++| ....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 00000 00011122211111110 012345568999998754 23444433333223345666544 4444443
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch-hHHHHH
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP-LAIKAV 322 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~i 322 (375)
. ......+++.+++.++....+...+...... --......|++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 2233578899999999888887765422111 12456677888888865 444444
No 88
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=6.6e-06 Score=81.18 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=109.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCC-cEEEEEcCCCchHHHHHHHHHhhhhhcCC---ccEEEEEEecCCCChhHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDST-KMVGLHGLGGVGKTTLAKFVGNQLRQNNI---FDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~ 193 (375)
|..+...+|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+.+...-... +.|. .. ...+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~------~C----~~C~~ 81 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG------EC----SSCKS 81 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc------cc----hHHHH
Confidence 66778889999999999999987654 46889999999999999999887642110 0000 00 00011
Q ss_pred HHHHhCCC------CCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hh
Q 038205 194 LVKSLGWA------LTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQ 263 (375)
Q Consensus 194 i~~~l~~~------~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~ 263 (375)
+...-... ......++......... .-..+++-++|+|+++.. ..++.+...+..-...+.+|++|.. ..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 11100000 00011122222211110 022456668999998754 3455554444433345566655543 33
Q ss_pred HHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 264 VCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 264 v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
+... ......+++.+++.++....+.+.+.... .+--.+.+..|++.++|.+-.+
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 3322 22235688999999999888887764222 1122566777888999877533
No 89
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.42 E-value=4.5e-06 Score=78.91 Aligned_cols=197 Identities=18% Similarity=0.176 Sum_probs=104.3
Q ss_pred CCccchHHHHHHHHHHHh----c---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALK----K---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|.+..+++|.+.+. . ..++-+.++|++|+|||++|+.+++.... .| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEeh----H
Confidence 345677777777766542 1 23678999999999999999999987652 22 11111 1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCCC--CC
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVGD--RD 250 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~ 250 (375)
.+... .++ .........+.. .....+.+|+||+++... .+..+...+.. ..
T Consensus 214 ~l~~k---~~g-----e~~~~lr~lf~~---A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EFVQK---YLG-----EGPRMVRDVFRL---ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHHHH---hcc-----hhHHHHHHHHHH---HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11111 111 111122222222 445678999999976320 01111111111 22
Q ss_pred CCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH-H---HH
Q 038205 251 NCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA-I---KA 321 (375)
Q Consensus 251 ~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i---~~ 321 (375)
.+..||.||...+.... . .....+.+...+.++...+|..+.......++. ....+++.+.|+--| | ..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888876443321 2 223568888889999888888766422212211 134566667665433 2 22
Q ss_pred HHHHh--c-CC---CHHHHHHHHHHhh
Q 038205 322 VGSAL--R-LR---TADEWNVALDKLQ 342 (375)
Q Consensus 322 i~~~L--~-~~---~~~~w~~~l~~l~ 342 (375)
-|+.. + .+ +.+.+..++.+..
T Consensus 361 eA~~~A~r~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 361 EAGMQAVRKNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 23222 2 11 4566666666543
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.3e-05 Score=79.37 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=105.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+..++.|..++..+. .+.+.++|+.|+||||+|+.+.....-...-. ..+.+.-...+.+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 6677889999999999999997765 45678899999999999999977653211000 000000011111111
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe-CChhHHh
Q 038205 197 SLGWA------LTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT-RLQQVCY 266 (375)
Q Consensus 197 ~l~~~------~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-r~~~v~~ 266 (375)
....+ ......++..+.+..... -..+++-++|+|+++.. ..+..+...+..-...+.+|++| ....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 10000 001111222222111100 12456678999999754 33444433333222334555444 4443332
Q ss_pred h-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 267 R-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 267 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
. ......+.+.+++.++....+...+....... -......|++.++|.+..
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 2 22235678899999999888887664221111 145667788888887653
No 91
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.40 E-value=4e-06 Score=75.92 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCC
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSR 224 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~k 224 (375)
-+.++|++|+||||+|+.++......+.....-++.++. .. +...+.. .+.......+. .. .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g----~~~~~~~~~~~----~a--~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIG----HTAPKTKEILK----RA--M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcc----cchHHHHHHHH----Hc--c
Confidence 688999999999999999888776543332223444442 11 2221111 11122222222 22 2
Q ss_pred cEEEEEeCCCCc-----------ccccccCCCCCCCCCCcEEEEEeCChhHHhhh--C------CCCcccCCCCChHHHH
Q 038205 225 KILVILDDVWKE-----------LDLETIGIPVGDRDNCCKILLTTRLQQVCYRM--G------CDPRIKLDALDQAEGL 285 (375)
Q Consensus 225 r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~--~------~~~~~~l~~L~~~e~~ 285 (375)
.-+|+||++... .....+...+.....+.+||+++.....-... + ....+.+++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358999998632 11222333333334456777776543221111 1 1256899999999999
Q ss_pred HHHHHHcC
Q 038205 286 DLLRKHAG 293 (375)
Q Consensus 286 ~Lf~~~~~ 293 (375)
.++...+.
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99988774
No 92
>CHL00181 cbbX CbbX; Provisional
Probab=98.37 E-value=9.8e-06 Score=73.42 Aligned_cols=132 Identities=13% Similarity=0.125 Sum_probs=73.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. ..+ ...+.. .+.......+. ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g----~~~~~~~~~l~----~a~- 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIG----HTAPKTKEVLK----KAM- 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhc----cchHHHHHHHH----Hcc-
Confidence 3588999999999999999988765432222222444441 122 221110 11111222222 222
Q ss_pred CcEEEEEeCCCCc-----------ccccccCCCCCCCCCCcEEEEEeCChhHHhhh--------CCCCcccCCCCChHHH
Q 038205 224 RKILVILDDVWKE-----------LDLETIGIPVGDRDNCCKILLTTRLQQVCYRM--------GCDPRIKLDALDQAEG 284 (375)
Q Consensus 224 kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~--------~~~~~~~l~~L~~~e~ 284 (375)
.-+|+||++... +....+...+.....+..||+++....+.... .....+.+++++.+|.
T Consensus 123 -ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 123 -GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred -CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 249999998642 11222222233333456777777644332111 1235789999999999
Q ss_pred HHHHHHHcC
Q 038205 285 LDLLRKHAG 293 (375)
Q Consensus 285 ~~Lf~~~~~ 293 (375)
.+++...+.
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 999988874
No 93
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=7.6e-06 Score=84.73 Aligned_cols=203 Identities=19% Similarity=0.243 Sum_probs=115.3
Q ss_pred ccchHHHHHHHHHHHhc---CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEEEEecCCCCh---hHHHHHHHH
Q 038205 124 FETTESACNQIIEALKK---DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGIATVSQDPSI---INVQSELVK 196 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~---~~~~~~i~~ 196 (375)
++||+.+++.|...+.. +...++.+.|.+|||||++++.|....... +.|-...+-....+... ...++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 67999999999998843 557799999999999999999999887654 22222112112222211 122333333
Q ss_pred Hh-------------------CCC--------------CC------CCCH---HHHHH-HHHHHhh-hc-CCCcEEEEEe
Q 038205 197 SL-------------------GWA--------------LT------EKDE---EDRAD-RLRLMFS-ES-KSRKILVILD 231 (375)
Q Consensus 197 ~l-------------------~~~--------------~~------~~~~---~~~~~-~l~~~~~-~l-~~kr~LlVlD 231 (375)
++ +.. .. +.++ ..... .+...+. .. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 110 00 0000 00000 1111111 22 3469999999
Q ss_pred CCCCcc--cc---cccCCCCC---CCCCCcEEEEEeCCh--hHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCc
Q 038205 232 DVWKEL--DL---ETIGIPVG---DRDNCCKILLTTRLQ--QVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTM 301 (375)
Q Consensus 232 dv~~~~--~~---~~l~~~l~---~~~~gs~IivTTr~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 301 (375)
|+.-.+ .+ +.+..... ...+-...+.|.+.. .+-......+.+.|.||+..+...+.....+... ...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--LLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--ccc
Confidence 995321 11 11111111 001112222333322 2222233347899999999999999999887532 223
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHhcC
Q 038205 302 TDVSKRVADECKGLPLAIKAVGSALRL 328 (375)
Q Consensus 302 ~~~~~~i~~~~~glPlai~~i~~~L~~ 328 (375)
.+..+.|+++..|+|+-+..+-..|..
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 567899999999999999888777754
No 94
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.32 E-value=1.1e-05 Score=84.08 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=92.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC----ccEEEEEEecCCCChhHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI----FDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~ 193 (375)
|..+.+.+||+.++++++..|......-+.++|++|+|||++|+.+......... ....+|.. ++. .
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~----~ 239 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMG----A 239 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHH----H
Confidence 5567889999999999999997776667779999999999999999887643211 12223321 111 1
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhcC--CCcEEEEEeCCCCcc---------cccccCCCCCCCCCCcEEEEEeCCh
Q 038205 194 LVKSLGWALTEKDEEDRADRLRLMFSESK--SRKILVILDDVWKEL---------DLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 194 i~~~l~~~~~~~~~~~~~~~l~~~~~~l~--~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
+.. +... ..+....+..++..+. +++.+|++|+++... +...+..+... ....++|-+|..+
T Consensus 240 l~a--~~~~----~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~ 312 (852)
T TIGR03346 240 LIA--GAKY----RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLD 312 (852)
T ss_pred Hhh--cchh----hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHH
Confidence 110 0000 0122233333333332 468999999987431 11112222221 1224566555544
Q ss_pred hHHh-------hhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 263 QVCY-------RMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 263 ~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
.... .......+.+...+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3321 11223567888889999999987653
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.31 E-value=5e-06 Score=85.26 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=93.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC---Cc-cEEEEEEecCCCChhHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN---IF-DKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~ 193 (375)
|..+.+++||+++++.++..|......-+.++|++|+|||++|+.+++...... .+ ...+|.. + .. .
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~----~ 248 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MG----S 248 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HH----H
Confidence 566788999999999999999777666778999999999999999998874321 11 2333321 1 11 1
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhcC-CCcEEEEEeCCCCcc--------cc--cc-cCCCCCCCCCCcEEEEEeCC
Q 038205 194 LVKSLGWALTEKDEEDRADRLRLMFSESK-SRKILVILDDVWKEL--------DL--ET-IGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 194 i~~~l~~~~~~~~~~~~~~~l~~~~~~l~-~kr~LlVlDdv~~~~--------~~--~~-l~~~l~~~~~gs~IivTTr~ 261 (375)
+.... .-..+....+..+++.+. .++.+|++|+++... .. .. +...+. . ...++|-+|..
T Consensus 249 l~a~~------~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~-g~i~~IgaTt~ 320 (731)
T TIGR02639 249 LLAGT------KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-S-GKLRCIGSTTY 320 (731)
T ss_pred Hhhhc------cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-C-CCeEEEEecCH
Confidence 11100 001123334444443443 468899999986321 11 11 222221 1 12355555543
Q ss_pred hhHHh-------hhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 262 QQVCY-------RMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 262 ~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
.+... .......+.+..++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22211 11223578999999999999998654
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.1e-05 Score=70.69 Aligned_cols=175 Identities=19% Similarity=0.211 Sum_probs=104.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..|+|.++..++|.=.+.. .....+.++||+|.||||||..+++...+. +.. +......-..-+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~----tsGp~leK~gDla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKI----TSGPALEKPGDLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEe----cccccccChhhHH
Confidence 77788999999988888666632 346789999999999999999999988754 111 1111001111111
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---------cccc---------------cCCCCCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---------DLET---------------IGIPVGD 248 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---------~~~~---------------l~~~l~~ 248 (375)
.++. .|+.. =+|.+|++.... .+++ +...++
T Consensus 96 aiLt-----------------------~Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp- 150 (332)
T COG2255 96 AILT-----------------------NLEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP- 150 (332)
T ss_pred HHHh-----------------------cCCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC-
Confidence 2222 22222 234455554220 0111 111222
Q ss_pred CCCCcEEEEEeCChhHHhhhC--CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHh
Q 038205 249 RDNCCKILLTTRLQQVCYRMG--CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSAL 326 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L 326 (375)
+-+-|=-|||.-.+...+. ...+.+++..+.+|..++..+.+..-. ..-..+-+.+|+++..|-|--..-+-+..
T Consensus 151 --pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 151 --PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred --CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 2234557898655433322 225678999999999999998875221 11225678899999999997555443333
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.28 E-value=9.1e-06 Score=84.40 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=90.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC----ccEEE-EEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI----FDKVG-IATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~-wv~~~~~~~~~~~~~ 192 (375)
|..+.+.+||+.+++.++..|......-+.++|++|+|||++|+.+......... ....+ .+..+. ++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~- 246 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV- 246 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh-
Confidence 5667889999999999999998776667789999999999999999988743211 11222 222221 00
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhc--CCCcEEEEEeCCCCcc---------cccccCCCCCCCCCCcEEEEEeCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSES--KSRKILVILDDVWKEL---------DLETIGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTr~ 261 (375)
. +. ....+....+..++..+ .+++.+|++|+++... +...+..+.... ...++|-+|..
T Consensus 247 ---a--g~----~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~ 316 (857)
T PRK10865 247 ---A--GA----KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTL 316 (857)
T ss_pred ---h--cc----chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCC
Confidence 0 00 00111222233322222 3578999999986431 111222222211 23466665555
Q ss_pred hhHHhh-------hCCCCcccCCCCChHHHHHHHHHHc
Q 038205 262 QQVCYR-------MGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 262 ~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
++.... ......+.+...+.++...+++...
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 443111 1122356666668888888887654
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=1.1e-05 Score=77.09 Aligned_cols=179 Identities=20% Similarity=0.187 Sum_probs=102.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
..+.|+|++|+|||+|++.+++.......-..+++++. ..+...+...+... .... +.+ .+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~~~~----~~~---~~~~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN----KMEE----FKE---KYRS 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----CHHH----HHH---HHHh
Confidence 46889999999999999999998765421123455532 23344444444211 1111 222 2222
Q ss_pred CcEEEEEeCCCCccc---c-cccCCCCCC-CCCCcEEEEEeCCh---------hHHhhhCCCCcccCCCCChHHHHHHHH
Q 038205 224 RKILVILDDVWKELD---L-ETIGIPVGD-RDNCCKILLTTRLQ---------QVCYRMGCDPRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 224 kr~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 289 (375)
.-+|+|||++.... + +.+...+.. ...|..+|+|+... .+...+.....+.+.+.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 34899999975321 1 112111111 12345677877641 122333334578999999999999999
Q ss_pred HHcCCCCCCCCchHHHHHHHHHcCCchhHHH----HHHHH---hcCC-CHHHHHHHHHHh
Q 038205 290 KHAGIDVADKTMTDVSKRVADECKGLPLAIK----AVGSA---LRLR-TADEWNVALDKL 341 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~----~i~~~---L~~~-~~~~w~~~l~~l 341 (375)
+.+.... ..--+++..-|++.+.|.+-.+. .+..+ .... +....++++..+
T Consensus 279 ~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 279 KKAEEEG-LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8876322 11225777888888888766433 22211 1122 667777777654
No 99
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=0.00011 Score=68.64 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=124.4
Q ss_pred CCCCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 120 FFSSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
......||+.+++.+.+++.. ...+.+-|.|-+|.|||.+...++.+......-..++++..-.-.....++..|+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 345678999999999998743 4577889999999999999999998877543223445665555466778888888
Q ss_pred HHhCC-CCCCCCHHHHHHHHHHHhhhcCC--CcEEEEEeCCCCcc--cccccCCCCCC-CCCCcEEEEEeCC------hh
Q 038205 196 KSLGW-ALTEKDEEDRADRLRLMFSESKS--RKILVILDDVWKEL--DLETIGIPVGD-RDNCCKILLTTRL------QQ 263 (375)
Q Consensus 196 ~~l~~-~~~~~~~~~~~~~l~~~~~~l~~--kr~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs~IivTTr~------~~ 263 (375)
..+.. ........+....+.. ...+ .-+|+|+|+.+... .-..+...|.+ .-+++++|+.--- +.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHH---HHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 87722 1122222333344444 5544 46899999987531 11111112211 2245665544321 11
Q ss_pred HHhhhCC-----CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhc
Q 038205 264 VCYRMGC-----DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALR 327 (375)
Q Consensus 264 v~~~~~~-----~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~ 327 (375)
....+.. ...+...|.+.++..++|...+......+.+....+..+++|.|.---+..+-.+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1222222 256788999999999999998865444444444555566666555444444433333
No 100
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.28 E-value=2.4e-05 Score=75.33 Aligned_cols=192 Identities=19% Similarity=0.172 Sum_probs=106.8
Q ss_pred HHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHH
Q 038205 132 NQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDR 210 (375)
Q Consensus 132 ~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 210 (375)
.....+..+++ ...+.|+|++|+|||+|++.+++.......-..+.|++. .++..++...+... ...
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~~-- 185 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----KLN-- 185 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----cHH--
Confidence 34444443322 346999999999999999999998764322124555543 34555555554211 111
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCcc---cc-cccCCCCCC-CCCCcEEEEEeC-Chh--------HHhhhCCCCcccC
Q 038205 211 ADRLRLMFSESKSRKILVILDDVWKEL---DL-ETIGIPVGD-RDNCCKILLTTR-LQQ--------VCYRMGCDPRIKL 276 (375)
Q Consensus 211 ~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTr-~~~--------v~~~~~~~~~~~l 276 (375)
.+.+ ....+.-+|++||++... .. ..+...+.. ...|..||+||. .+. +..++.....+.+
T Consensus 186 --~f~~---~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 186 --EFRE---KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred --HHHH---HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 1222 333345689999997431 11 112111111 123457888874 322 1223344457889
Q ss_pred CCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH----HH--HHhcC-C-CHHHHHHHHHHh
Q 038205 277 DALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA----VG--SALRL-R-TADEWNVALDKL 341 (375)
Q Consensus 277 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~----i~--~~L~~-~-~~~~w~~~l~~l 341 (375)
++.+.+.-..++.+.+..... .--.++..-|++.+.|..-.+.- +. +.+.. . +...-++++..+
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999988753221 12256778888888775443321 11 11122 2 666666666654
No 101
>PRK06620 hypothetical protein; Validated
Probab=98.25 E-value=6e-06 Score=71.53 Aligned_cols=134 Identities=17% Similarity=0.033 Sum_probs=78.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
+.+.|+|++|+|||+|++.+++.... .++. ..+. . . . .. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-------------------~-~-------~---~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-------------------N-E-------E---IL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-------------------c-h-------h---HH-h
Confidence 56899999999999999987775531 1111 0000 0 0 0 11 1
Q ss_pred CcEEEEEeCCCCcccccccCCCCCC-CCCCcEEEEEeCCh-------hHHhhhCCCCcccCCCCChHHHHHHHHHHcCCC
Q 038205 224 RKILVILDDVWKELDLETIGIPVGD-RDNCCKILLTTRLQ-------QVCYRMGCDPRIKLDALDQAEGLDLLRKHAGID 295 (375)
Q Consensus 224 kr~LlVlDdv~~~~~~~~l~~~l~~-~~~gs~IivTTr~~-------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 295 (375)
..-+|++||++...+ ..+...+.. ...|..+|+|++.. .+.+++....++++++++.++...++.+.+...
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 234788999974321 111111110 13466888988742 234445555689999999999888888776422
Q ss_pred CCCCCchHHHHHHHHHcCCchhHH
Q 038205 296 VADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~glPlai 319 (375)
. -.--+++.+-|++.+.|..-.+
T Consensus 164 ~-l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S-VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C-CCCCHHHHHHHHHHccCCHHHH
Confidence 1 1122566777777777654443
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.24 E-value=1.1e-05 Score=83.80 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=91.0
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHH
Q 038205 119 RFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 119 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
..+.+.+||+++++.++..|......-+.++|++|+|||++|+.++....... .-...+|. + +... +
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~----l 246 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL----L 246 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH----H
Confidence 34567899999999999999876666678999999999999999988875321 11233442 1 1111 1
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCcc-------c--ccccCCCCCCCCCCcEEEEEeCChhH
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKEL-------D--LETIGIPVGDRDNCCKILLTTRLQQV 264 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~-------~--~~~l~~~l~~~~~gs~IivTTr~~~v 264 (375)
+. +... ..+....+..+++.+ ..++.+|++|+++... . ...+..+... ....++|.+|..+..
T Consensus 247 ~a--g~~~----~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey 319 (821)
T CHL00095 247 LA--GTKY----RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEY 319 (821)
T ss_pred hc--cCCC----ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHH
Confidence 11 1111 112333444433333 3468999999986321 1 1112111111 122466666665443
Q ss_pred Hhh-------hCCCCcccCCCCChHHHHHHHHHH
Q 038205 265 CYR-------MGCDPRIKLDALDQAEGLDLLRKH 291 (375)
Q Consensus 265 ~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~ 291 (375)
... ......+.+...+.++...+++..
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 221 122356788888989988888753
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.24 E-value=2.9e-05 Score=75.30 Aligned_cols=193 Identities=17% Similarity=0.155 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcC--CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCH
Q 038205 130 ACNQIIEALKKD--STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDE 207 (375)
Q Consensus 130 ~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 207 (375)
....+..+...+ ....+.|+|++|+|||+|++.+++.......-..+.+++. ..+...+...+.. ...
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~----~~~ 202 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRN----NTM 202 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHc----CcH
Confidence 344444444332 2356899999999999999999998875422223445533 2333444444321 111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----ccccCCCCCC-CCCCcEEEEEeCCh---------hHHhhhCCCCc
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKELD----LETIGIPVGD-RDNCCKILLTTRLQ---------QVCYRMGCDPR 273 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~IivTTr~~---------~v~~~~~~~~~ 273 (375)
..+.+ .+. +.-+|+|||++.... .+.+...+.. ...|..+|+||... .+.+.+.....
T Consensus 203 ----~~~~~---~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~ 274 (450)
T PRK00149 203 ----EEFKE---KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLT 274 (450)
T ss_pred ----HHHHH---HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCee
Confidence 11222 333 344899999974311 1122221111 12345677777642 12334444567
Q ss_pred ccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH----HHHHHH--hc-CC-CHHHHHHHHHHh
Q 038205 274 IKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI----KAVGSA--LR-LR-TADEWNVALDKL 341 (375)
Q Consensus 274 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai----~~i~~~--L~-~~-~~~~w~~~l~~l 341 (375)
+.+++.+.++...++.+.+.... ..--+++..-|++.++|..-.+ ..+..+ +. .. +....+.++..+
T Consensus 275 v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 275 VDIEPPDLETRIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred EEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 89999999999999999875321 1222567888888888876643 222221 11 22 677778887765
No 104
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.22 E-value=1e-05 Score=76.68 Aligned_cols=134 Identities=22% Similarity=0.187 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCC
Q 038205 127 TESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKD 206 (375)
Q Consensus 127 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 206 (375)
+.....++.+.+..... ++.|.||-++||||+++.+....... .+++........
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~------------------- 76 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLD------------------- 76 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcc-------------------
Confidence 44555666666554444 99999999999999997776655432 334432221110
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh-----h-hCCCCcccCCCCC
Q 038205 207 EEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY-----R-MGCDPRIKLDALD 280 (375)
Q Consensus 207 ~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~-----~-~~~~~~~~l~~L~ 280 (375)
.....+.+..+...-..++..++||+|+....|......+.+..+. +|++|+.+..+.. . .+....+.+-||+
T Consensus 77 ~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 77 RIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred hhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 0111111222111222278899999999999998766666655555 8888887654422 2 2334678999999
Q ss_pred hHHHHH
Q 038205 281 QAEGLD 286 (375)
Q Consensus 281 ~~e~~~ 286 (375)
-.|...
T Consensus 156 F~Efl~ 161 (398)
T COG1373 156 FREFLK 161 (398)
T ss_pred HHHHHh
Confidence 988865
No 105
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=3.5e-05 Score=71.08 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=88.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcC-------------------CccEEEEEEecCCCChhHHHHHHHHHhCCCCC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNN-------------------IFDKVGIATVSQDPSIINVQSELVKSLGWALT 203 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 203 (375)
.+.+.++|+.|+||||+|+.+....--.+ ..+...|+.-... ..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-----------------~~ 84 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-----------------DK 84 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-----------------CC
Confidence 56788999999999999999877654211 0111222211000 00
Q ss_pred CCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCCh-hHHhhh-CCCCcccCCC
Q 038205 204 EKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQ-QVCYRM-GCDPRIKLDA 278 (375)
Q Consensus 204 ~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~ 278 (375)
....++..+....+.. ...+++-++|+|+++.. .....+...+..-..++.+|+||.+. .+.... +.-..+++.+
T Consensus 85 ~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~ 164 (328)
T PRK05707 85 TIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPL 164 (328)
T ss_pred CCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCC
Confidence 1122233322222111 22345556678999754 33333333333323457777777764 333332 3336789999
Q ss_pred CChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 279 LDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 279 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
++.+++.+.+...... ...+.+..++..++|.|+....
T Consensus 165 ~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 165 PSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred cCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHH
Confidence 9999999988876421 1134456778899999985543
No 106
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=1.3e-06 Score=80.26 Aligned_cols=217 Identities=20% Similarity=0.231 Sum_probs=128.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEE-EEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVG-IATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
.+.+.++|+||+||||++-++.. .. ..|..-. ++....-.+...+.-.+...++..... .+.....+.. ..
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~---~~ 85 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVR---RI 85 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHH---HH
Confidence 57899999999999999999888 44 3365544 444444444444444444445544322 2233334444 77
Q ss_pred CCCcEEEEEeCCCCcc-cccccCCCCCCCCCCcEEEEEeCChhHHhhhCCCCcccCCCCChH-HHHHHHHHHcCCC----
Q 038205 222 KSRKILVILDDVWKEL-DLETIGIPVGDRDNCCKILLTTRLQQVCYRMGCDPRIKLDALDQA-EGLDLLRKHAGID---- 295 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~---- 295 (375)
.++|.++|+||..+.. .-..+...+..+.+.-.|+.|+|.... ........+.+|+.. ++.++|...+...
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 7899999999986542 212222223334445578888886432 234456677777764 7889987765311
Q ss_pred CCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHH-HhhhcccCCCCCCCCCchhhhhhhhhhccCCC
Q 038205 296 VADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALD-KLQNAKLDKIEGIDKDSRGVYGCLKFSYDYLN 371 (375)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~-~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 371 (375)
...........+|.++.+|.|++|...++..+.....+--.-++ .+..-.. .-.....-+....+.+.+||.-|.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~-~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTG-GARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhc-ccccchhHHHhccchhhhhhHhhh
Confidence 11223356788999999999999999999888765433222111 1111000 001111123456777888886654
No 107
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.20 E-value=2e-05 Score=75.10 Aligned_cols=197 Identities=18% Similarity=0.174 Sum_probs=105.2
Q ss_pred CCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|.+..+++|.+.+.- ..+.-+.++|++|+|||++|+.+++.... .| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc----
Confidence 3456778888877776521 23567889999999999999999997653 23 222111
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCCC--CC
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVGD--RD 250 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~ 250 (375)
.+. ... ...........+.. .....+.+|+||+++... .+..+...+.. ..
T Consensus 252 eL~----~k~----~Ge~~~~vr~lF~~---A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELI----QKY----LGDGPKLVRELFRV---AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhh----hhh----cchHHHHHHHHHHH---HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111 110 00111112222222 334578899999875320 01111111111 13
Q ss_pred CCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH-H---HH
Q 038205 251 NCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA-I---KA 321 (375)
Q Consensus 251 ~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i---~~ 321 (375)
.+..||.||...+.... . .....+.+...+.++..++|..+.......++. ....++..+.|+--| | ..
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCCHHHHHHHHH
Confidence 35678888876544332 1 123578999999999999999876422211111 124555566554432 2 22
Q ss_pred HHHHh--cC---C-CHHHHHHHHHHhh
Q 038205 322 VGSAL--RL---R-TADEWNVALDKLQ 342 (375)
Q Consensus 322 i~~~L--~~---~-~~~~w~~~l~~l~ 342 (375)
-|+.+ +. . +.+.+..++++..
T Consensus 399 eA~~~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 399 EAGLLALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHhcCCccCHHHHHHHHHHHH
Confidence 23332 21 2 5666766666643
No 108
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.18 E-value=3.9e-05 Score=75.30 Aligned_cols=199 Identities=19% Similarity=0.204 Sum_probs=104.3
Q ss_pred CCCCccchHHHHHHHHHHH---hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEAL---KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..+.|.++...++.+.+ .. ..++-+.++||+|+|||+||+.+++..... ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH----
Confidence 3455667776665555433 21 224568899999999999999998875421 222221
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCC--CC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVG--DR 249 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 249 (375)
..+. ... ...........+.. .....+.+|+|||++... .+..+...+. ..
T Consensus 122 ~~~~----~~~----~g~~~~~l~~~f~~---a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 SDFV----EMF----VGVGASRVRDLFEQ---AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHH----HHH----hcccHHHHHHHHHH---HHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111 111 01112222333333 444577999999986421 0111111111 12
Q ss_pred CCCcEEEEEeCChhHHh-----hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch-hHHHHHH
Q 038205 250 DNCCKILLTTRLQQVCY-----RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP-LAIKAVG 323 (375)
Q Consensus 250 ~~gs~IivTTr~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~i~ 323 (375)
..+..||.||....... .......+.+...+.++-.++|+.++......++ .....+++.+.|.- --|..+.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHHH
Confidence 23455666676543211 1123367888888999999999887753221211 22457778887743 3333322
Q ss_pred H---Hh--c-CC---CHHHHHHHHHHhh
Q 038205 324 S---AL--R-LR---TADEWNVALDKLQ 342 (375)
Q Consensus 324 ~---~L--~-~~---~~~~w~~~l~~l~ 342 (375)
. +. + ++ +.+..+.+++...
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1 11 1 21 5566776666543
No 109
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.18 E-value=1.2e-05 Score=68.22 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
|..+...+|-++.++.+.-...+++.+-+.|.||+|+||||-+..+++..-...+-+.+.-.+.|...
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 44556788999999998887888889999999999999999888888776543333334444444433
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=98.18 E-value=3e-05 Score=77.58 Aligned_cols=172 Identities=21% Similarity=0.237 Sum_probs=95.2
Q ss_pred CCCCccchHHHHHHHHH---HHhcC---------CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIE---ALKKD---------STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+....|.++..+.+.+ .+... .++-+.++||+|+|||+||+.+++..... ++.++..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH---
Confidence 34556676665555444 34322 24568999999999999999998865421 2222211
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCCC--C
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVGD--R 249 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~ 249 (375)
.+. ... .+ .........+.. .....+++|+|||++... .+..+...+.. .
T Consensus 251 -~f~-~~~--~g-----~~~~~vr~lF~~---A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 -EFV-EMF--VG-----VGAARVRDLFKK---AKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHH-HHh--hh-----hhHHHHHHHHHH---HhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 111 000 00 111222333333 556688999999996321 12222222211 2
Q ss_pred CCCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc
Q 038205 250 DNCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 250 ~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 315 (375)
..+..||.||...+.... . .....+.+...+.++-.++++.++......+ ......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 345567777766443221 1 2236788888899999999998875422111 23456777777773
No 111
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=3.7e-05 Score=75.62 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=101.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
..+.|+|..|+|||.|++.+++.......-..+++++. ..+..++...+.. .. ...+.+ .+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~----~~----~~~f~~---~y~- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD----GK----GDSFRR---RYR- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh----cc----HHHHHH---Hhh-
Confidence 45899999999999999999998764221223445532 3344444443321 01 111222 222
Q ss_pred CcEEEEEeCCCCc---cccc-ccCCCCCC-CCCCcEEEEEeCC---------hhHHhhhCCCCcccCCCCChHHHHHHHH
Q 038205 224 RKILVILDDVWKE---LDLE-TIGIPVGD-RDNCCKILLTTRL---------QQVCYRMGCDPRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 224 kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 289 (375)
+--+|||||+... ..|. .+...+.. ...|..|||||.. ..+...+....++.+.+.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2348999999754 1221 12222211 1335678888875 2344556666788999999999999999
Q ss_pred HHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHH------HhcCC--CHHHHHHHHHHh
Q 038205 290 KHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGS------ALRLR--TADEWNVALDKL 341 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~------~L~~~--~~~~w~~~l~~l 341 (375)
+++...... --.++.+-|++.+.+..-.|.-+-. .+..+ +...-+.++..+
T Consensus 457 kka~~r~l~-l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 457 KKAVQEQLN-APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHhcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 887533211 1256677777777655443322111 11222 555566666654
No 112
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00011 Score=67.53 Aligned_cols=195 Identities=12% Similarity=0.091 Sum_probs=106.7
Q ss_pred CCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhc-------------CCccEEEEEEecCCCC
Q 038205 121 FSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQN-------------NIFDKVGIATVSQDPS 186 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------~~f~~~~wv~~~~~~~ 186 (375)
+...+|.+..++.+...+..+. .+...++|+.|+||+++|..+.+..--. ..++...|+.-.....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 3567899999999999998876 4799999999999999999887765321 1122233432110000
Q ss_pred hhHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe
Q 038205 187 IINVQSELVKSLGWA---LTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT 259 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~---~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT 259 (375)
-..+-..-+...+.. ......++.. .+.+.++ ...+++-++|+|+++.. .....+...+..-. .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 000000011111100 0011112222 2222111 23456779999998754 22333322232112 23555555
Q ss_pred CC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 260 RL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 260 r~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
.+ +.+.... +....+++.+++.++..+.+.+...... .......++..++|.|..+..
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHH
Confidence 44 4444333 3336889999999999999998753211 111235788999999976544
No 113
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.13 E-value=1.3e-05 Score=64.01 Aligned_cols=89 Identities=20% Similarity=0.107 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...+.|+|++|+||||+++.+........ ..++++..+........... ...................+.. ...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALA---LAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHH---HHH
Confidence 36789999999999999999998877542 23444544433222222111 1111111111122222222222 333
Q ss_pred CC-cEEEEEeCCCCcc
Q 038205 223 SR-KILVILDDVWKEL 237 (375)
Q Consensus 223 ~k-r~LlVlDdv~~~~ 237 (375)
.. ..++++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 33 4899999998653
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.09 E-value=3.8e-05 Score=74.44 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=87.4
Q ss_pred CCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC---ccEEEEEEecCCC
Q 038205 122 SSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI---FDKVGIATVSQDP 185 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~ 185 (375)
....|.+..+++|.+.+.- ..++-+.++||+|+|||++|+.+++....... .....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4456788888888776521 23567899999999999999999998753211 112334433321
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc---------c-----ccccCCCCCC--
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL---------D-----LETIGIPVGD-- 248 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~---------~-----~~~l~~~l~~-- 248 (375)
.++ ... ...........+..... ...+++++|+||+++... + +..+...+..
T Consensus 261 ---eLl----~ky----vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 261 ---ELL----NKY----VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ---hhc----ccc----cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 111 000 00111111111111111 123578999999997421 0 1122222221
Q ss_pred CCCCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcC
Q 038205 249 RDNCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
...+..||.||...+.... . .....+++...+.++..++|+.++.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 1234556666655443221 1 2235689999999999999998875
No 115
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.08 E-value=7.3e-06 Score=65.07 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHhhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999885
No 116
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=1.5e-05 Score=79.14 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=43.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcC-----CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 118 PRFFSSFETTESACNQIIEALKKD-----STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
|..+..+++.++.+..+..++... ..+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 677778899999999999998642 346799999999999999999988764
No 117
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.06 E-value=3.3e-05 Score=74.43 Aligned_cols=189 Identities=18% Similarity=0.197 Sum_probs=105.8
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|.+.....|...+..+. .......|+-|+||||+|+.++....-... .....++.-...+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 6667888999999999999987765 456788999999999999998876542110 00000111111112211
Q ss_pred HhCCCC------CCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCC--cccccccCCCCCCCCCCcEEEEEeCC-hhHHh
Q 038205 197 SLGWAL------TEKDEEDRADRLRLMFS-ESKSRKILVILDDVWK--ELDLETIGIPVGDRDNCCKILLTTRL-QQVCY 266 (375)
Q Consensus 197 ~l~~~~------~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~ 266 (375)
.-..+. .....++..+.+.+..- -..++.=++|+|+|+- ...|..+...+..-......|+.|.+ ..+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 100000 01112233222222111 1133555999999974 35666666555443445666665554 33332
Q ss_pred -hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC
Q 038205 267 -RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKG 314 (375)
Q Consensus 267 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g 314 (375)
..+....+.+..++.++....+...+..+...-+ ......|++..+|
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~G 212 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEG 212 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCC
Confidence 2344467899999999888888887753322211 3344445555554
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.06 E-value=1.9e-05 Score=74.71 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 122 SSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
...+..+..++.+...|... +.+.++|++|+|||++|+.+++.......|..+.|+.+++..+..+.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 34556788888888888653 5778899999999999999999886656788889999998877665553
No 119
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.06 E-value=0.00081 Score=69.62 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHHhc------CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALKK------DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.++..+.|.+++.. ...+++.++||+|+|||++|+.+.+...
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 56778888888876531 2346899999999999999999999875
No 120
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.05 E-value=1.6e-05 Score=65.63 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEE---------------------EecCCCC-------------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIA---------------------TVSQDPS------------- 186 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---------------------~~~~~~~------------- 186 (375)
+...++.++|++|.|||||.+.+|...+... ..+|+ .|.|++.
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 3567999999999999999999998876521 11111 1222221
Q ss_pred --------hhHH---HHHHHHHhCCC-------CCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCC----CcccccccCC
Q 038205 187 --------IINV---QSELVKSLGWA-------LTEKDEEDRADRLRLMFSESKSRKILVILDDVW----KELDLETIGI 244 (375)
Q Consensus 187 --------~~~~---~~~i~~~l~~~-------~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~----~~~~~~~l~~ 244 (375)
..++ ..+.++.++.. ..-...++..-.+.+ ++-+++-+|+-|+-. ....|+-+..
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIAR---AiV~~P~vLlADEPTGNLDp~~s~~im~l 179 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR---AIVNQPAVLLADEPTGNLDPDLSWEIMRL 179 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHH---HHccCCCeEeecCCCCCCChHHHHHHHHH
Confidence 1111 12223333321 111233444555666 888899999999654 3334544322
Q ss_pred CCCCCCCCcEEEEEeCChhHHhhhCC
Q 038205 245 PVGDRDNCCKILLTTRLQQVCYRMGC 270 (375)
Q Consensus 245 ~l~~~~~gs~IivTTr~~~v~~~~~~ 270 (375)
.-.-+..|..|+++|++.++...+..
T Consensus 180 feeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 180 FEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHhhcCcEEEEEeccHHHHHhccC
Confidence 22224568999999999988776643
No 121
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00024 Score=61.57 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec-CCCChhHHHHHHHHHhCCCCCCCCHH
Q 038205 130 ACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS-QDPSIINVQSELVKSLGWALTEKDEE 208 (375)
Q Consensus 130 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~ 208 (375)
.+..+...+ .++.+++.++|.-|+|||++.+.+....... .++-+.++ +..+...+...++..+... ......
T Consensus 39 ~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~ 112 (269)
T COG3267 39 ALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVN 112 (269)
T ss_pred HHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccC-ccchhH
Confidence 334443333 3455799999999999999999555544422 22224444 3456777888888887652 222222
Q ss_pred HHHHHHHHHhh--hcCCCc-EEEEEeCCCCc--ccccccCCC--C-CCCCCCcEEEEEeCCh-------hHHhhhC-CCC
Q 038205 209 DRADRLRLMFS--ESKSRK-ILVILDDVWKE--LDLETIGIP--V-GDRDNCCKILLTTRLQ-------QVCYRMG-CDP 272 (375)
Q Consensus 209 ~~~~~l~~~~~--~l~~kr-~LlVlDdv~~~--~~~~~l~~~--l-~~~~~gs~IivTTr~~-------~v~~~~~-~~~ 272 (375)
.....+...+. .-+++| ..+++||.... ..++.+... + .....--+|+..-..+ .+..... ...
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEE
Confidence 22222222111 224566 89999998754 233332111 1 1111112334333211 0111111 113
Q ss_pred c-ccCCCCChHHHHHHHHHHcCCCCC--CCCchHHHHHHHHHcCCchhHHHHHH
Q 038205 273 R-IKLDALDQAEGLDLLRKHAGIDVA--DKTMTDVSKRVADECKGLPLAIKAVG 323 (375)
Q Consensus 273 ~-~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~i~~~~~glPlai~~i~ 323 (375)
. |.+.|++.++...+++.+...... +--.......|.....|.|.+|+.+.
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 3 899999999999999887753221 22225667889999999999998765
No 122
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.04 E-value=8.5e-05 Score=72.00 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=91.0
Q ss_pred CCCccchHHHHHHHHHHH---h-------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHH
Q 038205 121 FSSFETTESACNQIIEAL---K-------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINV 190 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 190 (375)
+....|.+...+.+.... . -..++-|.++||+|+|||.+|+.+.+..... | +-+..+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH-------
Confidence 445567666555554321 1 1235678999999999999999999976532 1 1111110
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc--------------ccccCCCCCCCCCCcEEE
Q 038205 191 QSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD--------------LETIGIPVGDRDNCCKIL 256 (375)
Q Consensus 191 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~--------------~~~l~~~l~~~~~gs~Ii 256 (375)
+.. .....+.......+.. .-...+++|++|+++.... +..+...+.....+.-||
T Consensus 295 ---l~~----~~vGese~~l~~~f~~---A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 ---LFG----GIVGESESRMRQMIRI---AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ---hcc----cccChHHHHHHHHHHH---HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 110 0111112222222222 3345789999999864210 001111111223344566
Q ss_pred EEeCChhHHh-h----hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 257 LTTRLQQVCY-R----MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 257 vTTr~~~v~~-~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
.||.+....+ . ...+..+.++.-+.++-.++|+.+................+++.+.|+--
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence 6776543211 1 12336778888899999999998875321111001224566777766644
No 123
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.0003 Score=64.44 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC----------------CccEEEEEEe-cCCCChhH
Q 038205 128 ESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN----------------IFDKVGIATV-SQDPSIIN 189 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------------~f~~~~wv~~-~~~~~~~~ 189 (375)
+...+.+...+..+. +..+.++|+.|+||+++|..+.+..--.. ..+...|+.. +...+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~-- 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD-- 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc--
Confidence 445667777777665 45689999999999999998876553111 1111222210 000000
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHH-hhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHH
Q 038205 190 VQSELVKSLGWALTEKDEEDRADRLRLM-FSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVC 265 (375)
Q Consensus 190 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~-~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~ 265 (375)
........++..+....+ .....+++-++|+|+++.. ..-..+...+..-..++.+|++|.+ ..+.
T Consensus 88 ----------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 88 ----------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ----------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000001112222221111 0122346679999998754 2222222223222345667777664 4444
Q ss_pred hhhC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 266 YRMG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 266 ~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
..+. .-..+.+.+++.+++...+... +. + ...+..++..++|.|+....+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-CC---C---hHHHHHHHHHcCCCHHHHHHH
Confidence 3333 3367889999999999888753 21 1 233567899999999866543
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00039 Score=63.82 Aligned_cols=178 Identities=10% Similarity=0.085 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCc---cE-----EEEEEecCCCChhHHHHHHHHHhC
Q 038205 129 SACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF---DK-----VGIATVSQDPSIINVQSELVKSLG 199 (375)
Q Consensus 129 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i~~~l~ 199 (375)
.....|...+..+. .+.+.+.|+.|+||+++|..+....-=.... .| .-++.....+|+..+..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------- 81 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP------- 81 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc-------
Confidence 44566777776655 5678899999999999999987765311100 00 00000111111110000
Q ss_pred CCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHhhh-CCCCcc
Q 038205 200 WALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCYRM-GCDPRI 274 (375)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~~-~~~~~~ 274 (375)
........++..+....+. ....+++-++|+|+++.. .....+...+..-..++.+|++|.+ ..+.... +.-..+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0000112233332222211 133456678889998754 2333333333333345677777665 3444333 333678
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 275 KLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 275 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
.+.+++.++..+.+....... ...+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999998888764211 123556778899999633
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=8.7e-05 Score=71.40 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=87.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
..+.|+|++|+|||+|++.+++..... ...+++++ ...+...+...+... . ...+.. .. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~----~----~~~f~~---~~-~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG----E----MQRFRQ---FY-R 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc----h----HHHHHH---Hc-c
Confidence 468899999999999999999987643 22344443 223344444444210 0 112222 22 2
Q ss_pred CcEEEEEeCCCCccc----ccccCCCCCC-CCCCcEEEEEeCCh---------hHHhhhCCCCcccCCCCChHHHHHHHH
Q 038205 224 RKILVILDDVWKELD----LETIGIPVGD-RDNCCKILLTTRLQ---------QVCYRMGCDPRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 224 kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 289 (375)
+.-+|++||+..... .+.+...+.. ...|..||+||... .+..++.....+.+.+++.++...++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 445889999865321 1112111111 12355788887541 223334445688999999999999999
Q ss_pred HHcCCCCCCCCchHHHHHHHHHcCCc
Q 038205 290 KHAGIDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~gl 315 (375)
+.+.... ..--.++..-|+..+.|.
T Consensus 282 ~k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 8775322 111245566677666644
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.00 E-value=0.00011 Score=63.70 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=41.7
Q ss_pred CCCCCCccchHHHHHHHHHHH----hcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC
Q 038205 118 PRFFSSFETTESACNQIIEAL----KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN 171 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 171 (375)
|..+...+|.+...+.|.+-. ......-+.+||..|+|||++++.+.+.....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 344566888888888877653 333456788899999999999999999887654
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.99 E-value=4.6e-05 Score=71.32 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...+.|+|+.|+|||.|++.+.+.......-..++.+ + .......++..+.. ...+.+++ ..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~--~----se~f~~~~v~a~~~--------~~~~~Fk~---~y- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL--T----SEDFTNDFVKALRD--------NEMEKFKE---KY- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec--c----HHHHHHHHHHHHHh--------hhHHHHHH---hh-
Confidence 5789999999999999999999998754322234433 2 22333344333321 12223333 33
Q ss_pred CCcEEEEEeCCCCcc---ccc-ccCCCCCC-CCCCcEEEEEeCC---------hhHHhhhCCCCcccCCCCChHHHHHHH
Q 038205 223 SRKILVILDDVWKEL---DLE-TIGIPVGD-RDNCCKILLTTRL---------QQVCYRMGCDPRIKLDALDQAEGLDLL 288 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf 288 (375)
.--++++||++-.. .|+ .+...|.. ...|..||+|++. +.+.+++.....+.+.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 33489999997532 222 22222211 2234489999863 455666677788999999999999999
Q ss_pred HHHcC
Q 038205 289 RKHAG 293 (375)
Q Consensus 289 ~~~~~ 293 (375)
.+.+.
T Consensus 254 ~kka~ 258 (408)
T COG0593 254 RKKAE 258 (408)
T ss_pred HHHHH
Confidence 98765
No 128
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.99 E-value=0.00029 Score=65.95 Aligned_cols=193 Identities=13% Similarity=0.167 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHH-HHHHhhhhhcCCccEEEEEEecC---CCChhHHHHHHHHHhCC--
Q 038205 127 TESACNQIIEALKKDSTKMVGLHGLGGVGKTTLA-KFVGNQLRQNNIFDKVGIATVSQ---DPSIINVQSELVKSLGW-- 200 (375)
Q Consensus 127 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~-- 200 (375)
|.+.+++|..||......+|.|.||-|+||+.|+ .++..+.+. +..+...+ ..+-..++..++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999998888889999999999999999 666554331 12221111 11222233333333321
Q ss_pred ----------------------C--CCCCCHHHHHHHHH-------H-------------------HhhhcCCCcEEEEE
Q 038205 201 ----------------------A--LTEKDEEDRADRLR-------L-------------------MFSESKSRKILVIL 230 (375)
Q Consensus 201 ----------------------~--~~~~~~~~~~~~l~-------~-------------------~~~~l~~kr~LlVl 230 (375)
. ..+....++...+. . +++.-...+-++|+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 11111122221111 1 01111123669999
Q ss_pred eCCCCc-----------ccccccCCCCCCCCCCcEEEEEeCChhHHh----hhC--CCCcccCCCCChHHHHHHHHHHcC
Q 038205 231 DDVWKE-----------LDLETIGIPVGDRDNCCKILLTTRLQQVCY----RMG--CDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 231 Ddv~~~-----------~~~~~l~~~l~~~~~gs~IivTTr~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
|+.... .+|... +. .++-.+||++|-+..... .+. ..+.+.|...+++.|..+...++.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 998643 123321 21 123458888887644433 332 336789999999999999999886
Q ss_pred CCCCC-------------------CCchHHHHHHHHHcCCchhHHHHHHHHhcCC
Q 038205 294 IDVAD-------------------KTMTDVSKRVADECKGLPLAIKAVGSALRLR 329 (375)
Q Consensus 294 ~~~~~-------------------~~~~~~~~~i~~~~~glPlai~~i~~~L~~~ 329 (375)
..... .....-....++.+||=-.=+..+++.++.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 32100 1234455778888999988888888888754
No 129
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.98 E-value=7.6e-05 Score=69.05 Aligned_cols=104 Identities=8% Similarity=0.139 Sum_probs=67.1
Q ss_pred HHHHHHHHhc-CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccE-EEEEEecCC-CChhHHHHHHHHHhCCCCCCCCH
Q 038205 131 CNQIIEALKK-DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDK-VGIATVSQD-PSIINVQSELVKSLGWALTEKDE 207 (375)
Q Consensus 131 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~ 207 (375)
..++++.+.. +..+.+.|+|++|+|||||++.+.+..... +-+. ++|+.+.+. .++.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3446666543 556788999999999999999999887643 2233 467677654 47778888887766544332222
Q ss_pred HH---HHHHHHHHhhhc--CCCcEEEEEeCCCC
Q 038205 208 ED---RADRLRLMFSES--KSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~---~~~~l~~~~~~l--~~kr~LlVlDdv~~ 235 (375)
.. ....+.....++ .+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 21 111222222222 57999999999853
No 130
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00097 Score=61.11 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC------------------CccEEEEEEecCCCChhH
Q 038205 129 SACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN------------------IFDKVGIATVSQDPSIIN 189 (375)
Q Consensus 129 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~~~~~~~~~ 189 (375)
...+++...+..+. .+.+.+.|+.|+||+++|..+....-=.+ ..+...|+.-...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~----- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-----
Confidence 45566777676655 56789999999999999998876542110 1111222211100
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHH-hhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHH
Q 038205 190 VQSELVKSLGWALTEKDEEDRADRLRLM-FSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVC 265 (375)
Q Consensus 190 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~-~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~ 265 (375)
......++..+..... .....+++-++|+|+++.. .....+...+..-.+++.+|++|.+ ..+.
T Consensus 85 ------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 85 ------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred ------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 0011122222211111 0122345668899998754 3334443334333345677766665 4444
Q ss_pred hhhC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 266 YRMG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 266 ~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
.... .-..+.+.+++.+++.+.+.... . + ....++..++|.|+....+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~-~---~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQG-I---T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcC-C---c-----hHHHHHHHcCCCHHHHHHH
Confidence 4433 33678999999999999887531 1 1 1356788999999977554
No 131
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.97 E-value=2.9e-05 Score=79.14 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=90.0
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHH
Q 038205 120 FFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
.+.+.+||+.++.+++..|......-+.++|++|+|||++|+.++....... ..++.+|.. ++. .++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~ll 254 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLL 254 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHh
Confidence 3467899999999999999776556667899999999999999988754321 123334421 111 111
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCc--------cccc--ccCCCCCCCCCCcEEEEEeCChhH
Q 038205 196 KSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKE--------LDLE--TIGIPVGDRDNCCKILLTTRLQQV 264 (375)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~--------~~~~--~l~~~l~~~~~gs~IivTTr~~~v 264 (375)
. +.. -..+....+..++..+ ..++.+|++|+++.. .+.+ .+..++.. ....++|-+|..++.
T Consensus 255 a--G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~ 327 (758)
T PRK11034 255 A--GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEF 327 (758)
T ss_pred c--ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHH
Confidence 0 000 0112222333322233 346789999998632 1111 11122211 123455655554433
Q ss_pred Hh-------hhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 265 CY-------RMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 265 ~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
.. .......+.++.++.++...++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 11233578999999999999998643
No 132
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.95 E-value=6.1e-05 Score=68.64 Aligned_cols=198 Identities=13% Similarity=0.135 Sum_probs=115.6
Q ss_pred CCccchHHHHHHHHHHHhcCC---CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHh
Q 038205 122 SSFETTESACNQIIEALKKDS---TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSL 198 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 198 (375)
..+..|+..+..+..++.+.. +..|-|+|-+|.|||.+.+.+.+.... ..+|++.-..++...++..|+..+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 346689999999999987653 345689999999999999999998732 357999999999999999999998
Q ss_pred CC-CCCCCCH----HHHHHHHHHHhh--hc--CCCcEEEEEeCCCCcccccccCCC----C--CCCCCCcEEEEEeCC--
Q 038205 199 GW-ALTEKDE----EDRADRLRLMFS--ES--KSRKILVILDDVWKELDLETIGIP----V--GDRDNCCKILLTTRL-- 261 (375)
Q Consensus 199 ~~-~~~~~~~----~~~~~~l~~~~~--~l--~~kr~LlVlDdv~~~~~~~~l~~~----l--~~~~~gs~IivTTr~-- 261 (375)
.. +.+.... +...+.+..+.+ .. .++.++||||+++...+.+.+..+ + ....+ ..+|+++..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEecccc
Confidence 52 2111111 122222222222 22 246899999999866544432111 0 00122 233444332
Q ss_pred hhH-HhhhCCC--CcccCCCCChHHHHHHHHHHcCCCCC----CCCchHHHHHHHHHcCCchhHHHHHHHHh
Q 038205 262 QQV-CYRMGCD--PRIKLDALDQAEGLDLLRKHAGIDVA----DKTMTDVSKRVADECKGLPLAIKAVGSAL 326 (375)
Q Consensus 262 ~~v-~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~~~~~~i~~~~~glPlai~~i~~~L 326 (375)
+.. ...++.. .++.+...+.+|...++.+.-.+... ..-+.-+..-....|+ -|-.+..+.+..
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 221 1113333 34667788888888888754321110 0001112233445565 566666555544
No 133
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00029 Score=63.90 Aligned_cols=193 Identities=21% Similarity=0.237 Sum_probs=110.9
Q ss_pred ccchHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHH
Q 038205 124 FETTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINV 190 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 190 (375)
..|-++.+++|.+... -+.++=|.+|||+|.|||-||++|++..... |-. +..+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--FIr-----vvgS------ 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--FIR-----VVGS------ 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--EEE-----eccH------
Confidence 4467777777777642 1347788999999999999999999987743 432 2211
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc----------------cccccCCCCCCC--CC
Q 038205 191 QSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL----------------DLETIGIPVGDR--DN 251 (375)
Q Consensus 191 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~ 251 (375)
++.+..- .+....+++++. +-...+++|.+|+++... .+-++...+..+ ..
T Consensus 220 --ElVqKYi--------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 --ELVQKYI--------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred --HHHHHHh--------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2222110 112233444443 345589999999886320 122222222221 34
Q ss_pred CcEEEEEeCChhHHhh-----hCCCCcccCCCCChHHHHHHHHHHcCCCC--CCCCchHHHHHHHHHcCCchh----HHH
Q 038205 252 CCKILLTTRLQQVCYR-----MGCDPRIKLDALDQAEGLDLLRKHAGIDV--ADKTMTDVSKRVADECKGLPL----AIK 320 (375)
Q Consensus 252 gs~IivTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPl----ai~ 320 (375)
..|||..|...++... -.-+..+++..-+.+.-.++|+-+...-. ...++ +.+++.|.|.-- |+.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 5789988776554322 22336788886666666777776664211 22333 456677777654 445
Q ss_pred HHHHHhc--C---C-CHHHHHHHHHHhhh
Q 038205 321 AVGSALR--L---R-TADEWNVALDKLQN 343 (375)
Q Consensus 321 ~i~~~L~--~---~-~~~~w~~~l~~l~~ 343 (375)
+=|+++. . . +.+.+.++.++...
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 5566653 1 1 56667766666544
No 134
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00025 Score=65.74 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=84.3
Q ss_pred ccc-hHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCC-------------------ccEEEEEEec
Q 038205 124 FET-TESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNI-------------------FDKVGIATVS 182 (375)
Q Consensus 124 ~~g-r~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~~ 182 (375)
.+| .+..++.|...+..++ .+...++|+.|+||||+|+.+.+..--.+. ++...++...
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 345 6777788888887765 456799999999999999998776532110 1111111100
Q ss_pred CCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEe
Q 038205 183 QDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTT 259 (375)
Q Consensus 183 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT 259 (375)
. .....++..+.+..+. ....+++-++|+|+++.. .....+...+..-..++.+|++|
T Consensus 87 ~-------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 87 G-------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred c-------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 0 0111222222222110 023455668999998654 22333433443333456777777
Q ss_pred CC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHH
Q 038205 260 RL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKH 291 (375)
Q Consensus 260 r~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 291 (375)
.+ ..+.... +....+++.+++.++....+...
T Consensus 148 ~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 148 ENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 65 3333322 33367899999999998888653
No 135
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00026 Score=68.26 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=95.2
Q ss_pred CCCccchHHHHHHHHHHHh---c---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 121 FSSFETTESACNQIIEALK---K---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
+..+.|.+..+.+|.+.+. . ..++-|.++||+|+|||.||+.+++...+. ++.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4556788888888887752 1 136778999999999999999999998854 3333322
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCCC---C
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVGD---R 249 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~---~ 249 (375)
+|+..+ ...+.+.+.+.+.+ +-..-++++++|+++-.. ++-.....+.. .
T Consensus 258 ----eivSGv----SGESEkkiRelF~~---A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ----EIVSGV----SGESEKKIRELFDQ---AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----hhhccc----CcccHHHHHHHHHH---HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 222222 22333444444444 666799999999986420 11111111111 1
Q ss_pred CCCcEEEE-EeCChhHHhh---hC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc
Q 038205 250 DNCCKILL-TTRLQQVCYR---MG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 250 ~~gs~Iiv-TTr~~~v~~~---~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 315 (375)
+.+.-||= |+|...+-.. .+ ..+.|.+.--++..-.++++..+..-..+..+ ..++|++..-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCc
Confidence 22333333 4554333221 22 23567777777777777777666422212211 134556655554
No 136
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00061 Score=67.13 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=85.7
Q ss_pred ccchHHHHHHHHHHHhc------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 124 FETTESACNQIIEALKK------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
-.|-++..+.|++.|.- -..++++++||+|+|||+|++.++..... .|-.. +++.-.+..++.-.--
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R--kfvR~---sLGGvrDEAEIRGHRR-- 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR--KFVRI---SLGGVRDEAEIRGHRR-- 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC--CEEEE---ecCccccHHHhccccc--
Confidence 45788899999998832 24689999999999999999999998763 34222 2221111111110000
Q ss_pred hCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---------cccccCCC-----CCCC-----CCCcEEE-E
Q 038205 198 LGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---------DLETIGIP-----VGDR-----DNCCKIL-L 257 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~-----l~~~-----~~gs~Ii-v 257 (375)
..-..-+....+.+. ..+.+.-+++||+++... .+-++..+ |.++ --=|.|+ |
T Consensus 398 ---TYIGamPGrIiQ~mk----ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 398 ---TYIGAMPGKIIQGMK----KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ---cccccCChHHHHHHH----HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 000111122222222 334467789999886421 11111111 1100 0113333 4
Q ss_pred EeCC-hh-H-HhhhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 258 TTRL-QQ-V-CYRMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 258 TTr~-~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
||-| -+ + ++.++...++++.+.+++|=.++-++++
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4443 22 2 3445556789999999999999888876
No 137
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00075 Score=62.50 Aligned_cols=179 Identities=11% Similarity=0.072 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhh---cCCccE-----EEEEEecCCCChhHHHHHHHHHhC
Q 038205 129 SACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQ---NNIFDK-----VGIATVSQDPSIINVQSELVKSLG 199 (375)
Q Consensus 129 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~-----~~wv~~~~~~~~~~~~~~i~~~l~ 199 (375)
...+++...+..+. .+.+.+.|+.|+||+++|..+....-= ...-.| ..++.....+|+..+.- .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------~ 82 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------E 82 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec------c
Confidence 45667777776655 567889999999999999988766521 000000 00011111111110000 0
Q ss_pred CCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHhhh-CCCCcc
Q 038205 200 WALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCYRM-GCDPRI 274 (375)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~~-~~~~~~ 274 (375)
........++..+....+. ....+++-++|+|+++.. ..-..+...+..-..++.+|++|.+ ..+.... +.-..+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 0000112233333222211 133456779999988754 2333333333332345666666665 4454443 333578
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 275 KLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 275 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
.+.+++.+++.+.+....+. + .+.+..++..++|.|...
T Consensus 163 ~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 163 YLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHH
Confidence 99999999999888654321 1 234677889999999744
No 138
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=4.1e-05 Score=66.99 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcC----C-------c---cEEEEEEecCCCC------h-------------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN----I-------F---DKVGIATVSQDPS------I------------- 187 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~-------f---~~~~wv~~~~~~~------~------------- 187 (375)
....+++|+||+|.|||||.+.+..-.+... . + ..+.||.-...++ +
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence 3457999999999999999999988554211 0 1 2344443211111 1
Q ss_pred ---------hHHHHHHHHHhCC------CCCCCCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCc------ccccccCCC
Q 038205 188 ---------INVQSELVKSLGW------ALTEKDE-EDRADRLRLMFSESKSRKILVILDDVWKE------LDLETIGIP 245 (375)
Q Consensus 188 ---------~~~~~~i~~~l~~------~~~~~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~------~~~~~l~~~ 245 (375)
.....+.+++++. .....+. +...-.+.+ +|..++=||+||+.-.. ..+-.+...
T Consensus 108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR---AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR---ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH---HhccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 1233344444432 1222222 223334455 88889999999975432 233333333
Q ss_pred CCCCCCCcEEEEEeCChhHH
Q 038205 246 VGDRDNCCKILLTTRLQQVC 265 (375)
Q Consensus 246 l~~~~~gs~IivTTr~~~v~ 265 (375)
+.. .|..|+++|++-+..
T Consensus 185 l~~--eg~tIl~vtHDL~~v 202 (254)
T COG1121 185 LRQ--EGKTVLMVTHDLGLV 202 (254)
T ss_pred HHH--CCCEEEEEeCCcHHh
Confidence 332 288999999986543
No 139
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=6.5e-05 Score=65.92 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec----C-----CCChhH---
Q 038205 122 SSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS----Q-----DPSIIN--- 189 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~-----~~~~~~--- 189 (375)
....++......++.++.+. .++.+.|+.|+|||+||..+..+.-..+.|..++...-. . +.+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 44566788888888888664 599999999999999999988753212335544333111 0 012211
Q ss_pred -HHHHHHHHhCCCCCCCCHHHHHHHHH------H--HhhhcCCCcE---EEEEeCCCCcc--cccccCCCCCCCCCCcEE
Q 038205 190 -VQSELVKSLGWALTEKDEEDRADRLR------L--MFSESKSRKI---LVILDDVWKEL--DLETIGIPVGDRDNCCKI 255 (375)
Q Consensus 190 -~~~~i~~~l~~~~~~~~~~~~~~~l~------~--~~~~l~~kr~---LlVlDdv~~~~--~~~~l~~~l~~~~~gs~I 255 (375)
.+.-+...+..-... ......+. + -+.++++..+ ++|+|++.+.. +...+.. ..+.+|++
T Consensus 133 p~~~pi~D~L~~~~~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk~ 206 (262)
T PRK10536 133 PYFRPVYDVLVRRLGA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHhCh---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCCCEE
Confidence 222222222111111 11111110 0 1235666554 99999998753 3444433 34577999
Q ss_pred EEEeCCh
Q 038205 256 LLTTRLQ 262 (375)
Q Consensus 256 ivTTr~~ 262 (375)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9986543
No 140
>PRK08181 transposase; Validated
Probab=97.90 E-value=8.6e-05 Score=66.40 Aligned_cols=78 Identities=26% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 038205 136 EALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLR 215 (375)
Q Consensus 136 ~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 215 (375)
+|+. ...-+.++|++|+|||.||..+.+..... ...+.+++ ..+++..+.... ...+... .+.
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~----~~~~~~~---~l~ 163 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVAR----RELQLES---AIA 163 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHH----hCCcHHH---HHH
Confidence 4554 33568999999999999999999876543 22344553 234444443321 1111111 111
Q ss_pred HHhhhcCCCcEEEEEeCCCC
Q 038205 216 LMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv~~ 235 (375)
.+ .+.-||||||+..
T Consensus 164 ----~l-~~~dLLIIDDlg~ 178 (269)
T PRK08181 164 ----KL-DKFDLLILDDLAY 178 (269)
T ss_pred ----HH-hcCCEEEEecccc
Confidence 22 1344999999964
No 141
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.88 E-value=0.00012 Score=60.58 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC------------------CccEEEEEEecCC--
Q 038205 126 TTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN------------------IFDKVGIATVSQD-- 184 (375)
Q Consensus 126 gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~~~~-- 184 (375)
|.++..+.|.+.+..+. +..+.++|+.|+||+++|..+.+..--.. ......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 45677788888887776 45689999999999999999877653221 1222334432221
Q ss_pred -CChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC
Q 038205 185 -PSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 185 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~ 261 (375)
... +-.+++...+... ...+++=++|+|+++.. .....+...+..-..++.+|++|++
T Consensus 81 ~i~i-~~ir~i~~~~~~~------------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKI-DQIREIIEFLSLS------------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSH-HHHHHHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhH-HHHHHHHHHHHHH------------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 111 1112333322111 22346679999999764 3444444444333456888888886
Q ss_pred hh-HHhh-hCCCCcccCCCC
Q 038205 262 QQ-VCYR-MGCDPRIKLDAL 279 (375)
Q Consensus 262 ~~-v~~~-~~~~~~~~l~~L 279 (375)
.. +... .+.-..+.+.++
T Consensus 142 ~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGGS-HHHHTTSEEEEE---
T ss_pred hHHChHHHHhhceEEecCCC
Confidence 43 3332 222244555554
No 142
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.88 E-value=0.00032 Score=72.09 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=84.4
Q ss_pred ccchHHHHHHHHHHHhc------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 124 FETTESACNQIIEALKK------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
.+|.++..+.|++++.. ....++.++|++|+||||+++.++..... .|-. +..+...+...+...-...
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~~~---i~~~~~~d~~~i~g~~~~~ 398 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KYVR---MALGGVRDEAEIRGHRRTY 398 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEE---EEcCCCCCHHHhccchhcc
Confidence 67889999999988742 24678999999999999999999987652 2322 2222222221111111000
Q ss_pred hCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc------ccccCCCCC---------------CCCCCcEEE
Q 038205 198 LGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD------LETIGIPVG---------------DRDNCCKIL 256 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~---------------~~~~gs~Ii 256 (375)
. ..........+.. .. ...-+++||+++.... ...+...+. ..-....+|
T Consensus 399 ~-----g~~~G~~~~~l~~---~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 399 I-----GSMPGKLIQKMAK---VG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred C-----CCCCcHHHHHHHh---cC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1 1111222222222 22 2344788999864311 111111111 111334455
Q ss_pred EEeCChhHHhh-hCCCCcccCCCCChHHHHHHHHHHc
Q 038205 257 LTTRLQQVCYR-MGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 257 vTTr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
.|+.+..+... .+...++++.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 56654433222 2333678999999999999888766
No 143
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00079 Score=65.15 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGWALTE-KDEEDRADRLRLMFS 219 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~ 219 (375)
...+|+|+|++|+||||++..+............+..++... .......+......++..... .+.......+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~---- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE---- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH----
Confidence 357999999999999999999887665432223344444321 111222333333334333222 12233333333
Q ss_pred hcCCCcEEEEEeCCC
Q 038205 220 ESKSRKILVILDDVW 234 (375)
Q Consensus 220 ~l~~kr~LlVlDdv~ 234 (375)
.+. +.-+|++|..-
T Consensus 425 ~l~-~~DLVLIDTaG 438 (559)
T PRK12727 425 RLR-DYKLVLIDTAG 438 (559)
T ss_pred Hhc-cCCEEEecCCC
Confidence 333 34588888764
No 144
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.86 E-value=0.00025 Score=73.01 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=92.4
Q ss_pred CCccchHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|.+...+.|.+.+. ...++-+.++|++|+|||++|+.+++.... .| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEehH----
Confidence 344566666666655442 123456899999999999999999998652 22 222211
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--------------cccccCCCCCC--CCCC
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--------------DLETIGIPVGD--RDNC 252 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--------------~~~~l~~~l~~--~~~g 252 (375)
+++.. ....+.......+.. .-...+++|+||+++... ....+...+.. ...+
T Consensus 522 ----~l~~~----~vGese~~i~~~f~~---A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ----EILSK----WVGESEKAIREIFRK---ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ----HHhhc----ccCcHHHHHHHHHHH---HHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11111 111122222222222 344578999999986421 01111111211 1234
Q ss_pred cEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 253 CKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 253 s~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
.-||.||...+.... . .....+.+...+.++-.++|+.+.......++ .-...+++.+.|.--
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~sg 658 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYTG 658 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCCH
Confidence 556667765443221 1 23367888888999999999876542221111 113556777776543
No 145
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0003 Score=67.88 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
.+.-|.+|||+|+|||-||++|+|..... |+++... +++... +| .+.......+++ +-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY---VG-----ESErAVR~vFqR---AR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY---VG-----ESERAVRQVFQR---AR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH---hh-----hHHHHHHHHHHH---hh
Confidence 36678899999999999999999988754 3444322 222221 11 112222333333 55
Q ss_pred CCCcEEEEEeCCCCcc-------------cccccCCCCCC--CCCCcEEEEEeCChhHHhh--hC---CCCcccCCCCCh
Q 038205 222 KSRKILVILDDVWKEL-------------DLETIGIPVGD--RDNCCKILLTTRLQQVCYR--MG---CDPRIKLDALDQ 281 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~gs~IivTTr~~~v~~~--~~---~~~~~~l~~L~~ 281 (375)
..-+|+|.||+++... ...++...+.. ...|..||-.|..+++-.. +. -+..+.++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 5689999999986421 12222222322 3456777776665554221 22 235677888888
Q ss_pred HHHHHHHHHHcC
Q 038205 282 AEGLDLLRKHAG 293 (375)
Q Consensus 282 ~e~~~Lf~~~~~ 293 (375)
+|-..+++....
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 999999998876
No 146
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.0021 Score=60.13 Aligned_cols=88 Identities=23% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGWALTEK-DEEDRADRLRLMFS 219 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~ 219 (375)
...++.++|++|+||||++..+............+..++... .....+-++...+.++.+.... +..+....+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~---- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA---- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH----
Confidence 357999999999999999999988764322123444444322 2234455566666666544322 2222322222
Q ss_pred hcCCCcEEEEEeCCC
Q 038205 220 ESKSRKILVILDDVW 234 (375)
Q Consensus 220 ~l~~kr~LlVlDdv~ 234 (375)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 456689774
No 147
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00032 Score=70.17 Aligned_cols=178 Identities=22% Similarity=0.209 Sum_probs=104.3
Q ss_pred CCCCCccchHHH---HHHHHHHHhcC---------CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 119 RFFSSFETTESA---CNQIIEALKKD---------STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 119 ~~~~~~~gr~~~---~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
-.+.++.|-++. +.++++.|.++ -++=+.++||+|+|||-||++++....+- |++++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--
Confidence 344555666554 45555556554 26778999999999999999999988754 4444432
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-----------------cccccCCCCCCC
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-----------------DLETIGIPVGDR 249 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~~ 249 (375)
+..+.+. ........+.... +-...++++.+|+++... .+.++...+...
T Consensus 379 ------EFvE~~~----g~~asrvr~lf~~---ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ------EFVEMFV----GVGASRVRDLFPL---ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ------HHHHHhc----ccchHHHHHHHHH---hhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 1111111 0111222233333 445688999999876421 133333333332
Q ss_pred CCCc--EEEEEeCChhHHhh-----hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 250 DNCC--KILLTTRLQQVCYR-----MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 250 ~~gs--~IivTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
..+. -++-+|...++.+. -.-+..+.++.-+.....++|.-++.......+...+.+ |+...-|.+-|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 2223 33335555444322 122367888888889999999998864433345566666 888888888765
No 148
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.85 E-value=4.3e-05 Score=66.60 Aligned_cols=36 Identities=36% Similarity=0.351 Sum_probs=29.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV 181 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 181 (375)
-.++|+|++|+|||||+..+..... ..|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 4788999999999999999987766 56877766644
No 149
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.84 E-value=0.0013 Score=59.66 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEEEEecC-CCChhHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGIATVSQ-DPSIINVQSELVKSLGWALTE-KDEEDRADRLRLMF 218 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~ 218 (375)
..++++|+|++|+||||++..++...... +.+ .+..++... .......+......++.+... .+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~--- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD--- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH---
Confidence 35699999999999999999998877643 222 344444332 112233344444444444322 22333333333
Q ss_pred hhcCCCcEEEEEeCC
Q 038205 219 SESKSRKILVILDDV 233 (375)
Q Consensus 219 ~~l~~kr~LlVlDdv 233 (375)
.+.+ .-++++|..
T Consensus 269 -~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 -RLRD-KDLILIDTA 281 (282)
T ss_pred -HccC-CCEEEEeCC
Confidence 3433 347777753
No 150
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=9.7e-06 Score=67.41 Aligned_cols=35 Identities=37% Similarity=0.492 Sum_probs=28.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEE
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGI 178 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 178 (375)
+.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987754 45666665
No 151
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.81 E-value=0.00011 Score=60.95 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-C--CccE-EEEEEecCCCCh--hHHHHHHHHHhCCCCCCCCH-HHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-N--IFDK-VGIATVSQDPSI--INVQSELVKSLGWALTEKDE-EDRADR 213 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~--~f~~-~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~-~~~~~~ 213 (375)
....+++|+|++|+|||||++.+....... + .++. ..-..+++.+.. ..+...+... .....+. +...-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 356799999999999999999998876532 1 1111 011123333221 1233333210 1122222 233333
Q ss_pred HHHHhhhcCCCcEEEEEeCCCCccc---ccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 214 LRLMFSESKSRKILVILDDVWKELD---LETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 214 l~~~~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
+.. .+..++-++++|+....-+ ...+...+... +..||++|++.....
T Consensus 102 lar---al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FAR---LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHH---HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 444 7777888999998764321 11111111111 367899999876543
No 152
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.80 E-value=6.4e-05 Score=66.10 Aligned_cols=126 Identities=18% Similarity=0.261 Sum_probs=69.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcC-----------C-----c-cEEEEEEecCC----------------C--
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN-----------I-----F-DKVGIATVSQD----------------P-- 185 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------~-----f-~~~~wv~~~~~----------------~-- 185 (375)
+...+++|+||+|+|||||.+.++.-.+... . + ....++.-+.. +
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 3567999999999999999999987654310 0 0 01122211100 0
Q ss_pred --------ChhHHHHHHHHHhCC------CCCCCCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc------ccccCC
Q 038205 186 --------SIINVQSELVKSLGW------ALTEKDE-EDRADRLRLMFSESKSRKILVILDDVWKELD------LETIGI 244 (375)
Q Consensus 186 --------~~~~~~~~i~~~l~~------~~~~~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~l~~ 244 (375)
.-.....+.++.++. ...+.+. +...-.+.. .|..+.=+|+||+-.+.-+ .-++..
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr---ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~ 182 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR---ALAQETPILLLDEPTSHLDIAHQIEVLELLR 182 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH---HHhcCCCEEEeCCCccccCHHHHHHHHHHHH
Confidence 011133344444432 2223333 223334444 8888888999998654321 111212
Q ss_pred CCCCCCCCcEEEEEeCChhHHhhhCC
Q 038205 245 PVGDRDNCCKILLTTRLQQVCYRMGC 270 (375)
Q Consensus 245 ~l~~~~~gs~IivTTr~~~v~~~~~~ 270 (375)
.+. ...|..||+++++.+.|.....
T Consensus 183 ~l~-~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 183 DLN-REKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHH-HhcCCEEEEEecCHHHHHHhCC
Confidence 221 2357789999999988776543
No 153
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.80 E-value=6.2e-05 Score=63.04 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcC---CccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN---IFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLM 217 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 217 (375)
+...+++|+|++|+|||||++.+........ .++..-...+.+... -.......-.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-----------------LSgGq~qrv~lar- 84 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-----------------LSGGELQRVAIAA- 84 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-----------------CCHHHHHHHHHHH-
Confidence 4567999999999999999999988765321 111110111222211 1111222233333
Q ss_pred hhhcCCCcEEEEEeCCCCccc---ccccCCCCCC--CCCCcEEEEEeCChhHHh
Q 038205 218 FSESKSRKILVILDDVWKELD---LETIGIPVGD--RDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 218 ~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~IivTTr~~~v~~ 266 (375)
.+..++-++++|+....-+ ...+...+.. ...+..||++|++.....
T Consensus 85 --al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 --ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred --HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 7777888999998764321 1111111111 112367899999876554
No 154
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.80 E-value=8.4e-05 Score=62.55 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|.|++|+|||||++.+.....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999988754
No 155
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00015 Score=61.36 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEE-------------------EecCCCCh--------------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIA-------------------TVSQDPSI-------------- 187 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv-------------------~~~~~~~~-------------- 187 (375)
....+++|+||+|+|||||.+.+..-..... ..+|+ .|.|.|++
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 3567999999999999999999876554321 12222 12333321
Q ss_pred -----------hHHHHHHHHHhCCCCC-------CCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccccc---ccCCC-
Q 038205 188 -----------INVQSELVKSLGWALT-------EKDEEDRADRLRLMFSESKSRKILVILDDVWKELDLE---TIGIP- 245 (375)
Q Consensus 188 -----------~~~~~~i~~~l~~~~~-------~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~---~l~~~- 245 (375)
.....+++..++.... -....+..-.+.+ +|.-++-++.||+..+.-+-+ ++..-
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR---ALaM~P~vmLFDEPTSALDPElv~EVL~vm 179 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR---ALAMDPKVMLFDEPTSALDPELVGEVLDVM 179 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH---HHcCCCCEEeecCCcccCCHHHHHHHHHHH
Confidence 1222244444443211 1122333445555 888889999999987652211 11100
Q ss_pred CCCCCCCcEEEEEeCChhHHhhh
Q 038205 246 VGDRDNCCKILLTTRLQQVCYRM 268 (375)
Q Consensus 246 l~~~~~gs~IivTTr~~~v~~~~ 268 (375)
..-...|-..|+.|+....|...
T Consensus 180 ~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 180 KDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHcCCeEEEEechhHHHHHh
Confidence 11124567888999987776654
No 156
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.77 E-value=0.00066 Score=60.87 Aligned_cols=38 Identities=34% Similarity=0.416 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 128 ESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+++..++..+ ..+.+.|++|+|||++|+.+....
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455556655543 467799999999999999998744
No 157
>PRK08116 hypothetical protein; Validated
Probab=97.76 E-value=4e-05 Score=68.79 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...+.++|++|+|||.||..+++..... -..+++++ ...++..+........ .......+ + .+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~~~~~-~---~l~ 177 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG----KEDENEII-R---SLV 177 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc----cccHHHHH-H---Hhc
Confidence 3468899999999999999999998754 23445554 3345555544432211 11111112 2 343
Q ss_pred CCcEEEEEeCCCC--cccccc--cCCCCCC-CCCCcEEEEEeCC
Q 038205 223 SRKILVILDDVWK--ELDLET--IGIPVGD-RDNCCKILLTTRL 261 (375)
Q Consensus 223 ~kr~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~IivTTr~ 261 (375)
+-. ||||||+.. ...|.. +...+.. ...+..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 333 899999953 233322 2111211 1345678888864
No 158
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.73 E-value=0.0001 Score=61.68 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh---cC---Ccc--EEEEEEecCCCChhHHHHHHHHHhCCCC---CC----C
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ---NN---IFD--KVGIATVSQDPSIINVQSELVKSLGWAL---TE----K 205 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~----~ 205 (375)
....+++|+|++|+|||||.+.+....-. .. .|. .+.| +.+ .+.+..++... .. .
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcC
Confidence 35679999999999999999988532110 00 111 1222 222 34556555321 11 1
Q ss_pred CH-HHHHHHHHHHhhhcCCC--cEEEEEeCCCCccc---ccccCCCCCC-CCCCcEEEEEeCChhHHh
Q 038205 206 DE-EDRADRLRLMFSESKSR--KILVILDDVWKELD---LETIGIPVGD-RDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 206 ~~-~~~~~~l~~~~~~l~~k--r~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~IivTTr~~~v~~ 266 (375)
+. ....-.+.. .+..+ +-++++|+....-+ .+.+...+.. ...|..||++|++.+...
T Consensus 89 SgGq~qrl~lar---al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 89 SGGELQRVKLAS---ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CHHHHHHHHHHH---HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11 122222333 66667 78999998765321 1111111111 124678999999987654
No 159
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.71 E-value=8.7e-05 Score=63.30 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=39.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec-CCCChhHHHHHHHHHhCCC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS-QDPSIINVQSELVKSLGWA 201 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~ 201 (375)
+++|.++|+.|+||||.+..++.....+ -..+..++.. ......+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4689999999999999888888877754 3345555543 2234556667777777654
No 160
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=0.00014 Score=60.72 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3567999999999999999999988765
No 161
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.70 E-value=0.00012 Score=63.09 Aligned_cols=126 Identities=15% Similarity=0.210 Sum_probs=70.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-------------------CCccEEEEEEecCCCCh--------------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-------------------NIFDKVGIATVSQDPSI-------------- 187 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~-------------- 187 (375)
....+++|+||+|+|||||...+..-.+.. ..|...-.-.+.|.+++
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl 108 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPL 108 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHH
Confidence 456799999999999999999886543321 01111111122333321
Q ss_pred ----------hHHHHHHHHHhCCCC-------CCC-CHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc------ccccccC
Q 038205 188 ----------INVQSELVKSLGWAL-------TEK-DEEDRADRLRLMFSESKSRKILVILDDVWKE------LDLETIG 243 (375)
Q Consensus 188 ----------~~~~~~i~~~l~~~~-------~~~-~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~------~~~~~l~ 243 (375)
......+++.++... .+. ..++..-.+.+ ++...+-+|+-|+-... .....+.
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR---AL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 109 LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR---ALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH---HHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 122334444444321 111 12334445555 88889999999976432 1122221
Q ss_pred CCCCCCCCCcEEEEEeCChhHHhhhCC
Q 038205 244 IPVGDRDNCCKILLTTRLQQVCYRMGC 270 (375)
Q Consensus 244 ~~l~~~~~gs~IivTTr~~~v~~~~~~ 270 (375)
..+ ....|..||+.|++..++..++.
T Consensus 186 ~~~-~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 186 REL-NKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHH-HHhcCCEEEEEcCCHHHHHhCCE
Confidence 111 12347899999999999986543
No 162
>PRK07261 topology modulation protein; Provisional
Probab=97.69 E-value=0.00012 Score=61.06 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEE
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGI 178 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 178 (375)
.|.|+|++|+||||||+.+....... -+.+...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998765432 13344444
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.69 E-value=0.00055 Score=70.58 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|.+..+++|.+.+.. ..++-+.++|++|+|||+||+.+++.... .| +.+..+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE---EEEecH------
Confidence 4467888888888776521 23567899999999999999999887642 12 222211
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-------------cccccCCCCCC-CCCCcE
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-------------DLETIGIPVGD-RDNCCK 254 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~gs~ 254 (375)
.+ .... ...........+.. .....+.+|+|||++... ....+...+.. ...+..
T Consensus 247 ~i----~~~~----~g~~~~~l~~lf~~---a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EI----MSKY----YGESEERLREIFKE---AEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HH----hccc----ccHHHHHHHHHHHH---HHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 0000 01111222222222 344567899999985421 01112111111 122333
Q ss_pred EEE-EeCChh-HHhhh----CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 255 ILL-TTRLQQ-VCYRM----GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 255 Iiv-TTr~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
+++ ||.... +-..+ .....+.+...+.++-.+++..........+ ......+++.+.|..-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 444 454332 21111 1124577787888888888886553221111 1124667777777653
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0025 Score=59.00 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCC
Q 038205 222 KSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVA 297 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 297 (375)
.+++-++|+|+++.. .....+...+..-.+++.+|++|.+ ..+.... +.-..+.+.+++.++..+.+... +.
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 345668899998754 3444444444433455666666655 4444333 33367899999999999988765 21
Q ss_pred CCCchHHHHHHHHHcCCchhHHH
Q 038205 298 DKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 298 ~~~~~~~~~~i~~~~~glPlai~ 320 (375)
++ ...++..++|.|+...
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHH
Confidence 11 2335778899997544
No 165
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.66 E-value=0.00012 Score=61.22 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3567999999999999999999988754
No 166
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00016 Score=62.59 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCCccchHHHH---HHHHHHHhcC------CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHH
Q 038205 121 FSSFETTESAC---NQIIEALKKD------STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQ 191 (375)
Q Consensus 121 ~~~~~gr~~~~---~~l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 191 (375)
+...+|.++.. .-|++.|.++ .++-|..+||+|.|||-+|+.+.+..++. | +.+.. ..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HHH-
Confidence 34567777654 4456667664 37889999999999999999999988753 2 22211 111
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--------------ccccccCCCCCC--CCCCcE
Q 038205 192 SELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--------------LDLETIGIPVGD--RDNCCK 254 (375)
Q Consensus 192 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--------------~~~~~l~~~l~~--~~~gs~ 254 (375)
|-+. ..+...+++++.+ +-+.-+|++.+|+++.. +....+...+.. .+.|..
T Consensus 188 --iGeh---------VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEH---------VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHH---------hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1111 1233344444433 34458999999987532 111222222221 345666
Q ss_pred EEEEeCChhHHhh-h--CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 255 ILLTTRLQQVCYR-M--GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 255 IivTTr~~~v~~~-~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
-|-.|.+.++... . .....++..--+.+|-.+++..++..-..+-+ .-.+.++++.+|+-
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 6666665554332 1 12245677777889999999988742211211 12456666776653
No 167
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.63 E-value=0.0002 Score=58.01 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=57.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSE 220 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 220 (375)
....+++|+|++|+|||||++.+....... ...+++.... .++....-.......-.+.. .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~lar---a 84 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAK---L 84 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCeE-------------EEEEEccCCHHHHHHHHHHH---H
Confidence 346799999999999999999998876532 2222221100 00000001111222233344 7
Q ss_pred cCCCcEEEEEeCCCCccc---ccccCCCCCCCCCCcEEEEEeCChhHHhh
Q 038205 221 SKSRKILVILDDVWKELD---LETIGIPVGDRDNCCKILLTTRLQQVCYR 267 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~IivTTr~~~v~~~ 267 (375)
+..++-++++|+....-+ ...+...+... +..||++|++.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 777888999998764311 11121111111 2478999998765543
No 168
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00022 Score=59.68 Aligned_cols=109 Identities=23% Similarity=0.272 Sum_probs=60.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE-----------------ecCCCCh---hHHHHHHHHHhCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT-----------------VSQDPSI---INVQSELVKSLGW 200 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-----------------~~~~~~~---~~~~~~i~~~l~~ 200 (375)
....+++|+|++|+|||||++.+....... ...+++. +++.+.. ..+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----- 95 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----- 95 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----
Confidence 346799999999999999999998865421 1222221 1111110 11111111
Q ss_pred CCCCCCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc------ccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 201 ALTEKDE-EDRADRLRLMFSESKSRKILVILDDVWKELD------LETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 201 ~~~~~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
.+. +...-.+.. .+..++-++++|+....-+ +..+...+. ..|..+|++|++.....
T Consensus 96 ----LS~G~~qrv~lar---al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 ----LSGGMKQRLALAQ---ALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred ----cCHHHHHHHHHHH---HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 111 222223334 7778889999998765422 222212222 23678999999877654
No 169
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.62 E-value=5.8e-05 Score=63.38 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT 180 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 180 (375)
...-+.++|++|+|||.||..+.+..-..+ + .+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee
Confidence 456799999999999999999998776532 2 345554
No 170
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.60 E-value=0.0001 Score=61.01 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=62.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC--CChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD--PSIINVQSELVKSLGWALTEKDEEDRADRLRLMF 218 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 218 (375)
....+++|.|++|+|||||.+.+...... ....+++....- .+..... ...++....-...+...-.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~lar-- 95 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIAR-- 95 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHH--
Confidence 35679999999999999999999887643 233333321111 1111111 1111111111112223333444
Q ss_pred hhcCCCcEEEEEeCCCCccc---ccccCCCCCC-CCCCcEEEEEeCChhHHh
Q 038205 219 SESKSRKILVILDDVWKELD---LETIGIPVGD-RDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 219 ~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~IivTTr~~~v~~ 266 (375)
.+..++-++++|+..+.-+ ...+...+.. ...|..||++|++.....
T Consensus 96 -al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 96 -ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7777889999998765321 1112111211 123678999999876443
No 171
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.59 E-value=5.4e-05 Score=77.55 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=89.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh-hh-cCCccEEEEEEecCCCChhHHHHHHHHHhCCCC----CCCCHHHHHHHHHH
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL-RQ-NNIFDKVGIATVSQDPSIINVQSELVKSLGWAL----TEKDEEDRADRLRL 216 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~-~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~ 216 (375)
.+++.|+||+|.||||+.+.+.... .. .+.| +..... .....+.++...++... ...+...-...+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~-----Vpa~~~-~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIP-----IPANEH-SEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCC-----ccCCcc-ccccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 3789999999999999999987662 11 1111 111000 00001111111111000 00001111112333
Q ss_pred HhhhcCCCcEEEEEeCCCCccc---cc----ccCCCCCCCCCCcEEEEEeCChhHHhhhCCCCcccCCCCChHHHHHHHH
Q 038205 217 MFSESKSRKILVILDDVWKELD---LE----TIGIPVGDRDNCCKILLTTRLQQVCYRMGCDPRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 217 ~~~~l~~kr~LlVlDdv~~~~~---~~----~l~~~l~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 289 (375)
++..+ ..+-|+++|++....+ -. .+...+. ..|+.+|+||+...+.........+.-..+.-++-.--|.
T Consensus 396 il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~ 472 (771)
T TIGR01069 396 ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPT 472 (771)
T ss_pred HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceE
Confidence 33233 5788999999875422 11 1212221 3578999999998775443221111100001000000011
Q ss_pred HHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038205 290 KHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALDKLQN 343 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~~l~~ 343 (375)
..+.... +. ...|-.|++++ |+|-.+..-|.-+......+.+.++..|..
T Consensus 473 Ykl~~G~--~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 473 YKLLKGI--PG-ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred EEECCCC--CC-CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111111 11 34566777776 889888888877765555567777776655
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.59 E-value=0.00026 Score=59.71 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec--CCCChhH------HHHHHHHHhCCCC------CCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS--QDPSIIN------VQSELVKSLGWAL------TEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~------~~~~i~~~l~~~~------~~~~~ 207 (375)
...+++|.|++|+|||||++.+...... ....+++.-. ...+... ...++++.++... ...+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 5679999999999999999999987643 2233332211 1111111 1112444444321 11121
Q ss_pred -HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc---ccccCCCCCC--CCCCcEEEEEeCChhHH
Q 038205 208 -EDRADRLRLMFSESKSRKILVILDDVWKELD---LETIGIPVGD--RDNCCKILLTTRLQQVC 265 (375)
Q Consensus 208 -~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~IivTTr~~~v~ 265 (375)
....-.+.. .+...+-++++|+....-+ .+.+...+.. ...+..||++|++....
T Consensus 101 G~~qrl~lar---al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLAR---ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHH---HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222233333 7777889999998764321 1222122211 11257899999986654
No 173
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.0054 Score=58.75 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh-hcCCccEEEEEEecCCC-ChhHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR-QNNIFDKVGIATVSQDP-SIINVQSELVKSLGWALTE-KDEEDRADRLRLMFS 219 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~ 219 (375)
.+++.++|++|+||||++..++.... ... -..+..++..... ....-++...+.++.+... .+..+....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~---- 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE---- 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH----
Confidence 46999999999999999998877665 222 2344455433211 1122333334444443322 22333333333
Q ss_pred hcCCCcEEEEEeCC
Q 038205 220 ESKSRKILVILDDV 233 (375)
Q Consensus 220 ~l~~kr~LlVlDdv 233 (375)
.+. ..-++++|..
T Consensus 296 ~~~-~~DlVlIDt~ 308 (424)
T PRK05703 296 QLR-DCDVILIDTA 308 (424)
T ss_pred HhC-CCCEEEEeCC
Confidence 233 3468888965
No 174
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00048 Score=67.65 Aligned_cols=152 Identities=18% Similarity=0.087 Sum_probs=82.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMF-SE 220 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~ 220 (375)
..+-|.|.|+.|+|||+||+.+++... .+...++..++.+.-. ....+..+..+..++ ++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~------------------~~~~e~iQk~l~~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD------------------GSSLEKIQKFLNNVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc------------------chhHHHHHHHHHHHHHHH
Confidence 356789999999999999999999887 3444555555544321 111122222222221 17
Q ss_pred cCCCcEEEEEeCCCCc--------ccccc-----------cCCCCCCCCCCcE--EEEEeCChhH-Hhh----hCCCCcc
Q 038205 221 SKSRKILVILDDVWKE--------LDLET-----------IGIPVGDRDNCCK--ILLTTRLQQV-CYR----MGCDPRI 274 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~--------~~~~~-----------l~~~l~~~~~gs~--IivTTr~~~v-~~~----~~~~~~~ 274 (375)
+...+-++||||++.. .+|.. +...+ ...+.+ +|.|.....- -.. .-...+.
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 7778999999998632 11211 11111 123333 4444433211 111 1112457
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc
Q 038205 275 KLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 275 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 315 (375)
.+..+...+-.++++.......... ......-+..+|+|.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGY 608 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCc
Confidence 8888888888888877664222111 122334477777765
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.56 E-value=0.00035 Score=59.54 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC--C-------C----hhHHHHH
Q 038205 127 TESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD--P-------S----IINVQSE 193 (375)
Q Consensus 127 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~-------~----~~~~~~~ 193 (375)
+..+....++.|. ...++.+.|++|+|||.||-...-+.-..+.|+.++++.-.-. . + ....+.-
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 3455556666665 4569999999999999999988766655578888777642211 0 1 1112222
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHH------HhhhcCC---CcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 194 LVKSLGWALTEKDEEDRADRLRL------MFSESKS---RKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 194 i~~~l~~~~~~~~~~~~~~~l~~------~~~~l~~---kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
+...+..-......+. .+.+ -+.++++ ...++|+|++++. .++..+.... +.|||+|++--..
T Consensus 83 ~~d~l~~~~~~~~~~~---~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 83 IYDALEELFGKEKLEE---LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHTTTS-TTCHHH---HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHHHHHHHhChHhHHH---HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 3333322222222221 2211 1235555 3569999999875 4676664444 5679999987654
No 176
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.55 E-value=0.00012 Score=62.65 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=61.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII-NVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
+.|.|+|+.|+||||++..+....... ....++.. ..+.... .-...+..+-.. ........+.+.. .+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~-e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~---aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTI-EDPIEFVHESKRSLINQREV---GLDTLSFENALKA---ALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEE-cCCccccccCccceeeeccc---CCCccCHHHHHHH---Hhc
Confidence 578999999999999999887766532 22233321 1111100 000011111000 0111233445555 676
Q ss_pred CCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhh
Q 038205 223 SRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYR 267 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~ 267 (375)
..+=++++|++.+.+.+...... ...|..++.|++..+....
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHHHH
Confidence 67789999999876655433222 2345678889987766543
No 177
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0028 Score=58.51 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCChh-HHhhhC-CCCcccCCCCChHHHHHHHHHHcCCCCCC
Q 038205 223 SRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRLQQ-VCYRMG-CDPRIKLDALDQAEGLDLLRKHAGIDVAD 298 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~~~-v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 298 (375)
+++-++|+|++...+ .-..+...+.....++.+|++|++.. +..... .-..+++.+++.+++.+.+... +. .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~ 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---A 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---C
Confidence 344455668776542 11122222221123467888888754 333322 2267889999999998888654 11 1
Q ss_pred CCchHHHHHHHHHcCCchhHH
Q 038205 299 KTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 299 ~~~~~~~~~i~~~~~glPlai 319 (375)
. . ...+..++|.|+.+
T Consensus 188 ~--~---~~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 E--P---EERLAFHSGAPLFD 203 (325)
T ss_pred c--H---HHHHHHhCCChhhh
Confidence 1 1 11235678888643
No 178
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.52 E-value=8e-05 Score=58.24 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999764
No 179
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00061 Score=60.94 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhc--CCccEEEEEEec
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQN--NIFDKVGIATVS 182 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~ 182 (375)
.++|.++||+|.|||+|++.+++...++ +.|.....+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 6899999999999999999999998764 344444444443
No 180
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0055 Score=58.23 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++++|++|+||||++..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887754
No 181
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.49 E-value=0.00099 Score=58.66 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++.|+|++|+|||+|+.+++....... .-..++|++....++.. -+.++++..+.... ..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE-RLVQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHH-HHHHHHHHhccChHhHhcCEEEEecCCH
Confidence 467999999999999999999975532211 12568898877766543 33344444332111 1222
Q ss_pred HHHHHHHHHHhhhcC-C-CcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSESK-S-RKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~-kr~LlVlDdv~~ 235 (375)
.+....+..+...+. . +.-++|+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 333333333333333 3 567999998853
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0028 Score=60.47 Aligned_cols=158 Identities=23% Similarity=0.262 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hc
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ES 221 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l 221 (375)
...+.+.|++|+|||+||..++.... |+.+--++-..- ...+....-..+.+.++ +-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~m------------------iG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDM------------------IGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHc------------------cCccHHHHHHHHHHHHHHhh
Confidence 45678999999999999999987654 665443321110 01111112222222211 44
Q ss_pred CCCcEEEEEeCCCCcccccccCCCCCC-------------CCCCcE--EEEEeCChhHHhhhCCC----CcccCCCCCh-
Q 038205 222 KSRKILVILDDVWKELDLETIGIPVGD-------------RDNCCK--ILLTTRLQQVCYRMGCD----PRIKLDALDQ- 281 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gs~--IivTTr~~~v~~~~~~~----~~~~l~~L~~- 281 (375)
+..--.||+||+...-+|-.++..+.. -..|-| |+-||....+...|+-. ..|.++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 556679999999887777666554321 123334 44466666776665432 5688888887
Q ss_pred HHHHHHHHHHc-CCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhc
Q 038205 282 AEGLDLLRKHA-GIDVADKTMTDVSKRVADECKGLPLAIKAVGSALR 327 (375)
Q Consensus 282 ~e~~~Lf~~~~-~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~ 327 (375)
++..+.++..- |. +.....++++...+| +-.+|+.+-.++.
T Consensus 676 ~~~~~vl~~~n~fs---d~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 676 EQLLEVLEELNIFS---DDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred HHHHHHHHHccCCC---cchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 77777776543 22 334455666666666 3344555544443
No 183
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.48 E-value=0.0026 Score=58.90 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 129 SACNQIIEALKK---DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 129 ~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
...+.|.+.+.+ +.+.+|+|.|+-|+||||+.+.+.+..+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445566666654 457899999999999999999999988765
No 184
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.01 Score=55.34 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGWALT-EKDEEDRADRLRLMFS 219 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~~~ 219 (375)
+.+++.++|+.|+||||++..++......+ ..+.+++... ......-++...+.++.+.. ..++.+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~--- 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQY--- 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHH---
Confidence 467999999999999999999987765432 2455555432 22334455666666654432 2344444444433
Q ss_pred hcC--CCcEEEEEeCCC
Q 038205 220 ESK--SRKILVILDDVW 234 (375)
Q Consensus 220 ~l~--~kr~LlVlDdv~ 234 (375)
+. +..-++++|-.-
T Consensus 280 -l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 -MTYVNCVDHILIDTVG 295 (407)
T ss_pred -HHhcCCCCEEEEECCC
Confidence 32 344678888664
No 185
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.0041 Score=59.59 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGW 200 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 200 (375)
.+.+|.++|++|+||||++..++......+ + .+..++... .+...+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 467899999999999999999988776532 2 223332221 12233445555565554
No 186
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.46 E-value=0.0013 Score=59.16 Aligned_cols=170 Identities=22% Similarity=0.201 Sum_probs=95.6
Q ss_pred CCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC-hhHHHHHHHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS-IINVQSELVK 196 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~ 196 (375)
..++|..++..++..++.+ ++..-+.|+||.|+|||+|......+.. ..-....-+....... -.-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 5678888888888888754 4667889999999999999888777722 1112233333333221 1224555555
Q ss_pred HhCCCCC--CCCHHHHHHHHHHHhhhcC------CCcEEEEEeCCCCcc----c--ccccC-CCCCCCCCCcEEEEEeCC
Q 038205 197 SLGWALT--EKDEEDRADRLRLMFSESK------SRKILVILDDVWKEL----D--LETIG-IPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 197 ~l~~~~~--~~~~~~~~~~l~~~~~~l~------~kr~LlVlDdv~~~~----~--~~~l~-~~l~~~~~gs~IivTTr~ 261 (375)
++..... ........+.+..++..|. +.++++|+|+++--. + +-.+. ..-....|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 5532111 1111112222333333443 246899999875321 0 11110 011123455667789996
Q ss_pred hh-------HHhhhCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 262 QQ-------VCYRMGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 262 ~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
.. |-.+++...++-+++++-++...++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 32 223344444667788888999999998874
No 187
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.46 E-value=0.00083 Score=61.87 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+..++||||+|+|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34778999999999999999999998864
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.45 E-value=0.0015 Score=67.19 Aligned_cols=44 Identities=27% Similarity=0.399 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHHhc-------C--CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 124 FETTESACNQIIEALKK-------D--STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.+|.++.++.|...+.. + ....+.++||+|+|||+||+.++...
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 46778888888777642 1 12367899999999999999998876
No 189
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0016 Score=63.55 Aligned_cols=130 Identities=21% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
.++-|.++||+|+|||++|+.+.+..... | +.++.. +++ .. +-..+...+.+.+++ +-
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----EL~----sk----~vGeSEr~ir~iF~k---AR 524 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----ELF----SK----YVGESERAIREVFRK---AR 524 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----HHH----HH----hcCchHHHHHHHHHH---Hh
Confidence 47789999999999999999999987743 3 333221 111 11 112222333333333 44
Q ss_pred CCCcEEEEEeCCCCcc-------------cccccCCCCCCCC--CCcEEEE-EeCChhHHh-hhC---CCCcccCCCCCh
Q 038205 222 KSRKILVILDDVWKEL-------------DLETIGIPVGDRD--NCCKILL-TTRLQQVCY-RMG---CDPRIKLDALDQ 281 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~--~gs~Iiv-TTr~~~v~~-~~~---~~~~~~l~~L~~ 281 (375)
+--++++.||+++... .+..+...+.... ++.-||- |.|...+-. .+. .+..+.++.-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 4567999999876421 0112222222211 2233333 344333321 123 336777877788
Q ss_pred HHHHHHHHHHcC
Q 038205 282 AEGLDLLRKHAG 293 (375)
Q Consensus 282 ~e~~~Lf~~~~~ 293 (375)
+.-.++|+.++.
T Consensus 605 ~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 605 EARLEILKQCAK 616 (693)
T ss_pred HHHHHHHHHHHh
Confidence 888899998885
No 190
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.00017 Score=62.52 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.+++.|+|++|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 191
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00094 Score=61.79 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHHHh-cCCCc-EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALK-KDSTK-MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~-~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++-+.....+..+.. .++.+ .+.++||+|+||||+|..+.+..-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 3455677777777776 34444 499999999999999999988765
No 192
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00043 Score=65.82 Aligned_cols=85 Identities=26% Similarity=0.339 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCC---------CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHh
Q 038205 128 ESACNQIIEALKKDS---------TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSL 198 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 198 (375)
..++++|+++|.++. ++-|.++||+|.|||-||+.++....+. | |......|+ +++-
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd------Em~V-- 378 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD------EMFV-- 378 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh------hhhh--
Confidence 457788888887652 5678999999999999999999988754 2 222222221 1111
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCC
Q 038205 199 GWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWK 235 (375)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~ 235 (375)
...+.+++.++. +-..-+|+|.+|+++.
T Consensus 379 ---------GvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 379 ---------GVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---------cccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 112233444333 4455799999999874
No 193
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00023 Score=62.46 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=72.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-----CCChhHHHHHHHHHhCCCCC-------C-CCH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-----DPSIINVQSELVKSLGWALT-------E-KDE 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~-------~-~~~ 207 (375)
.+..+++|+|.+|+||||+++.+..-.... ...+. ....+ .....+...+++..++.... + ...
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~-f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEIL-FEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEE-EcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 356799999999999999999999887743 22222 22111 22233445666666653211 1 111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCcc------cccccCCCCCCCCCCcEEEEEeCChhHHhhhCC
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKEL------DLETIGIPVGDRDNCCKILLTTRLQQVCYRMGC 270 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~~ 270 (375)
....-.+.+ ++.-++-++|.|+.-+.. +.-.+...+. ...|...++.|++-.+...+..
T Consensus 114 QrQRi~IAR---ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIAR---ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHH---HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 222233444 788899999999865432 2111211221 2245678889999888776544
No 194
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0075 Score=58.30 Aligned_cols=59 Identities=24% Similarity=0.138 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGW 200 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 200 (375)
...+++++|++|+||||++..++...........+..+.... .....+-++...+.++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 357999999999999999999998765332222344443322 12233344444555443
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.42 E-value=0.00046 Score=62.77 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhh-hhcCCccEEEEE----EecC---------CCCh
Q 038205 122 SSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQL-RQNNIFDKVGIA----TVSQ---------DPSI 187 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv----~~~~---------~~~~ 187 (375)
-+..+|..+..--+++|.+++...|.+.|.+|+|||-||-+..-.. -.+..|..++.. .+.+ ...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3445677788888888999999999999999999998876543221 122334443211 1222 2234
Q ss_pred hHHHHHHHHHhCCCC--CCCCHHHHHHHHHH------HhhhcCCC---cEEEEEeCCCCc--ccccccCCCCCCCCCCcE
Q 038205 188 INVQSELVKSLGWAL--TEKDEEDRADRLRL------MFSESKSR---KILVILDDVWKE--LDLETIGIPVGDRDNCCK 254 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~------~~~~l~~k---r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 254 (375)
....+.|...+..-. +......+...+.. -+.+.+++ .-++|+|+.++. .++..+ +...+.|||
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~GsK 380 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEGSK 380 (436)
T ss_pred cchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCCCE
Confidence 445555555543211 11222222222111 12234443 449999999876 344444 445578999
Q ss_pred EEEEeCC
Q 038205 255 ILLTTRL 261 (375)
Q Consensus 255 IivTTr~ 261 (375)
|++|.-.
T Consensus 381 IVl~gd~ 387 (436)
T COG1875 381 IVLTGDP 387 (436)
T ss_pred EEEcCCH
Confidence 9988653
No 196
>PRK04132 replication factor C small subunit; Provisional
Probab=97.42 E-value=0.0034 Score=64.54 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=89.1
Q ss_pred EEc--CCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC-CC
Q 038205 148 LHG--LGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK-SR 224 (375)
Q Consensus 148 I~G--~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~-~k 224 (375)
+.| |.++||||+|..+++..-..+.-..++-++.+...+.. .+++++..+.... .+. .+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~-----------------~~~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN-VIREKVKEFARTK-----------------PIGGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcC-----------------CcCCCC
Confidence 347 88999999999999886321111234555555433333 3333333221000 111 24
Q ss_pred cEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCC-hhHHhhh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCC
Q 038205 225 KILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRL-QQVCYRM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKT 300 (375)
Q Consensus 225 r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 300 (375)
.-++|+|+++... ....+...+......+++|++|.+ ..+.... +....+++.+++.++....+.+.+...... -
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-L 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-C
Confidence 5799999998653 444444334332345677766654 3333222 223678999999999998888766422211 1
Q ss_pred chHHHHHHHHHcCCchhHH
Q 038205 301 MTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 301 ~~~~~~~i~~~~~glPlai 319 (375)
..+....|++.|+|.+-.+
T Consensus 710 ~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2567789999999988543
No 197
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.41 E-value=0.0019 Score=57.53 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
...+.++|.|.+|+|||||++.+++..+.+. -+.++++-+.+.. ...++.+.+...-.. ...+.+. .
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~~-~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKAH-GGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3578999999999999999999999887531 2345666666554 445555555442111 1111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCCc
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWKE 236 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~~ 236 (375)
...-.+.+++...+++.+||++||+...
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1223344533333489999999998643
No 198
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0077 Score=56.61 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=84.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
|--.++||+|.|||++..++++... |+..- +..+.-. ...+ |++++..- .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~--------------------~n~d----Lr~LL~~t-~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVK--------------------LDSD----LRHLLLAT-P 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeecccc--------------------CcHH----HHHHHHhC-C
Confidence 4568999999999999999999887 33321 1111110 1111 22221122 3
Q ss_pred CcEEEEEeCCCCccc-----------cc---------ccCCCC---CCCCCCcEEEE-EeCChhHHh--hhC---CCCcc
Q 038205 224 RKILVILDDVWKELD-----------LE---------TIGIPV---GDRDNCCKILL-TTRLQQVCY--RMG---CDPRI 274 (375)
Q Consensus 224 kr~LlVlDdv~~~~~-----------~~---------~l~~~l---~~~~~gs~Iiv-TTr~~~v~~--~~~---~~~~~ 274 (375)
.+-+||+.|++..-+ .. -+...+ ...+.+-|||| ||...+-.+ .+. -+..+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 445666666653211 00 011111 11122336655 665433211 122 23567
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHH-HHhcCC-CH-HHHHHHHHHhhh
Q 038205 275 KLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVG-SALRLR-TA-DEWNVALDKLQN 343 (375)
Q Consensus 275 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~-~~L~~~-~~-~~w~~~l~~l~~ 343 (375)
.+..=+.+....||.++.+....+ .+..+|.+...|.-+.=..++ .+|.++ +. ...+.+.+.|..
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 888899999999999999764423 334444444445444333444 444555 32 234444444443
No 199
>PRK09183 transposase/IS protein; Provisional
Probab=97.39 E-value=0.00032 Score=62.68 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+.|+|++|+|||+||..+++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999876543
No 200
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.39 E-value=0.0014 Score=66.31 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=78.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
.+-|.++|++|+|||++++.+.+..... | +.++.. .+. .+. ...........+.. ...
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~--f-----~~is~~----~~~-~~~-------~g~~~~~~~~~f~~---a~~ 242 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVP--F-----FTISGS----DFV-EMF-------VGVGASRVRDMFEQ---AKK 242 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC--E-----EEEehH----HhH-Hhh-------hcccHHHHHHHHHH---HHh
Confidence 3458999999999999999998876532 2 222211 111 010 01111222223333 344
Q ss_pred CCcEEEEEeCCCCcc----------------cccccCCCCCC--CCCCcEEEEEeCChhHHhh--h---CCCCcccCCCC
Q 038205 223 SRKILVILDDVWKEL----------------DLETIGIPVGD--RDNCCKILLTTRLQQVCYR--M---GCDPRIKLDAL 279 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L 279 (375)
..+++|++|+++... .+..+...+.. ...+.-+|.||...+.... . .....+.+...
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 578999999986431 01111111111 1234455567766544221 1 12366788888
Q ss_pred ChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC
Q 038205 280 DQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKG 314 (375)
Q Consensus 280 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g 314 (375)
+.++-.++++.+.......++.. ...+++.+.|
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G 355 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDID--AAIIARGTPG 355 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCC
Confidence 88888899888775322122211 2345555555
No 201
>PRK10867 signal recognition particle protein; Provisional
Probab=97.37 E-value=0.0082 Score=57.41 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+|.++|++|+||||++..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999988887765543
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.35 E-value=0.00036 Score=63.77 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCC
Q 038205 126 TTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA 201 (375)
Q Consensus 126 gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 201 (375)
++........+++.. ...+-+.|+|+.|+|||.||..+++.....+ + .+.+++++ .++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g-~-~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG-V-SSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-C-CEEEEEHH------HHHHHHHHHHhc-
Confidence 344445555555542 1346789999999999999999999987432 2 34455443 455555544421
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccc--cCCCC-CCC-CCCcEEEEEeCC
Q 038205 202 LTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLET--IGIPV-GDR-DNCCKILLTTRL 261 (375)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~IivTTr~ 261 (375)
.+. ...+. .+ .+--||||||+... ..|.. +...+ ... ..+..+|+||..
T Consensus 206 ---~~~---~~~l~----~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 ---GSV---KEKID----AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---CcH---HHHHH----Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111 12222 22 24559999999643 34532 32222 221 234567777753
No 203
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00057 Score=56.15 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
+..+++|+|++|+|||||++.+...... ....+++......... .......++....-...+...-.+.. .+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~--~~~~~~~i~~~~qlS~G~~~r~~l~~---~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLP--LEELRRRIGYVPQLSGGQRQRVALAR---AL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCC--HHHHHhceEEEeeCCHHHHHHHHHHH---HH
Confidence 4579999999999999999999887643 2333333221111100 01111111111111112222233344 66
Q ss_pred CCCcEEEEEeCCCCccc---ccccCCCCCC-CCCCcEEEEEeCChhHHhhh
Q 038205 222 KSRKILVILDDVWKELD---LETIGIPVGD-RDNCCKILLTTRLQQVCYRM 268 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~IivTTr~~~v~~~~ 268 (375)
...+-++++|+....-+ ...+...+.. ...+..++++|++.......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 66788999998864321 1112111111 11256899999987765543
No 204
>PRK06526 transposase; Provisional
Probab=97.35 E-value=0.00015 Score=64.49 Aligned_cols=28 Identities=36% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...-+.++|++|+|||+||..+......
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3457899999999999999999887654
No 205
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.35 E-value=0.0022 Score=56.25 Aligned_cols=211 Identities=15% Similarity=0.149 Sum_probs=113.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh----cCCccEEEEEEecCC---------
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ----NNIFDKVGIATVSQD--------- 184 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~--------- 184 (375)
|..+....++++....+.+....++.+...++||+|.||-|.+..+.+..-. +-..+...|.+-+..
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 3444556677777777777666667789999999999999977666555421 111223334432221
Q ss_pred -C-----------ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcE-EEEEeCCCCc--ccccccCCCCCCC
Q 038205 185 -P-----------SIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKI-LVILDDVWKE--LDLETIGIPVGDR 249 (375)
Q Consensus 185 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~ 249 (375)
. .-.-+.+++++.+..... +. .-..+.| ++|+-.+++. +.-..+.......
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----------ie----~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----------IE----TQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----------hh----hccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 112233444443321100 00 1112334 5666666542 1112222222223
Q ss_pred CCCcEEEEEeCC--hhHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHHHHHh
Q 038205 250 DNCCKILLTTRL--QQVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAVGSAL 326 (375)
Q Consensus 250 ~~gs~IivTTr~--~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i~~~L 326 (375)
.+.+|+|+...+ .-+...-+.--.+++...+++|....+++.+..+...-. .+++.+|+++++|.-- |+-++ -.+
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllml-E~~ 232 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLML-EAV 232 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHHH-HHH
Confidence 445677765332 222222222246789999999999999988763332211 6889999999987643 33332 222
Q ss_pred c--C--------C-CHHHHHHHHHHhhhc
Q 038205 327 R--L--------R-TADEWNVALDKLQNA 344 (375)
Q Consensus 327 ~--~--------~-~~~~w~~~l~~l~~~ 344 (375)
+ + . ..-+|+-+..++...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHH
Confidence 2 1 1 345798877766553
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.34 E-value=0.00034 Score=64.56 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=40.2
Q ss_pred CccchHHHHHHHHHHHhc------CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 123 SFETTESACNQIIEALKK------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.++|.++.++++.+++.. ...+++.++||+|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 678999999999998843 23578999999999999999999888764
No 207
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00023 Score=61.72 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||.+.+..-.+
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567999999999999999999976554
No 208
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.34 E-value=0.0067 Score=57.94 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.++.++|++|+||||++..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356899999999999999888877654
No 209
>PRK06696 uridine kinase; Validated
Probab=97.33 E-value=0.00035 Score=61.04 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHh---cCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 126 TTESACNQIIEALK---KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 126 gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.|.+.+++|.+.+. .+.+.+|+|.|++|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35667777777764 345779999999999999999999988764
No 210
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.33 E-value=0.00021 Score=67.57 Aligned_cols=26 Identities=31% Similarity=0.527 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....++|+||+|+||||||+.+..-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 35689999999999999999986544
No 211
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00071 Score=57.79 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=35.9
Q ss_pred hhhcCCCcEEEEEeCCCCcccccccCC---CCC-CCCCCcEEEEEeCChhHHhhhCCCC
Q 038205 218 FSESKSRKILVILDDVWKELDLETIGI---PVG-DRDNCCKILLTTRLQQVCYRMGCDP 272 (375)
Q Consensus 218 ~~~l~~kr~LlVlDdv~~~~~~~~l~~---~l~-~~~~gs~IivTTr~~~v~~~~~~~~ 272 (375)
+|.+--++-+.|||+.++--+.+.+.. .+. -..+|+-+++.|+.+.++....++.
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 335555677999999987655444321 111 1245778999999999988776553
No 212
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0016 Score=57.89 Aligned_cols=76 Identities=30% Similarity=0.274 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
...-+.++|++|+|||.||..+.+... +.. ..+.+++ ..+++.++...... .. ....+.. .+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~----~~---~~~~l~~---~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDE----GR---LEEKLLR---EL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhc----Cc---hHHHHHH---Hh
Confidence 566889999999999999999999988 322 2344553 34555555554432 11 1111111 11
Q ss_pred CCCcEEEEEeCCCCc
Q 038205 222 KSRKILVILDDVWKE 236 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~ 236 (375)
.+-=||||||+-..
T Consensus 166 -~~~dlLIiDDlG~~ 179 (254)
T COG1484 166 -KKVDLLIIDDIGYE 179 (254)
T ss_pred -hcCCEEEEecccCc
Confidence 23449999998653
No 213
>PRK04296 thymidine kinase; Provisional
Probab=97.32 E-value=0.00018 Score=61.16 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=59.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTE---KDEEDRADRLRLMFSE 220 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~~~~ 220 (375)
.++.|+|+.|.||||++..+..+....+ ..+..+. ..++.......++++++..... ....+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g--~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG--MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC--CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh----
Confidence 4788999999999999999888776432 2233331 1112222233455555533322 112222222221
Q ss_pred cCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChh
Q 038205 221 SKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQ 263 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~ 263 (375)
..++.-+||+|++.-. ++..++...+ ...|..||+|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 2335569999998542 2233222221 245789999998743
No 214
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.32 E-value=0.00035 Score=59.84 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.++++|.|++|+|||||++.+....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3799999999999999999997654
No 215
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0036 Score=65.56 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=36.5
Q ss_pred CccchHHHHHHHHHHHhcC---------CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKKD---------STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.+..++.+...+... ....+.++|++|+|||++|+.+.....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678888888888887431 134688999999999999999998754
No 216
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.00037 Score=58.63 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999987654
No 217
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.30 E-value=0.0015 Score=68.27 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=35.6
Q ss_pred CccchHHHHHHHHHHHhc-------CC--CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK-------DS--TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.+..++.+...+.. ++ ...+.++|++|+|||++|+.+.+..-
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 466888888888877642 11 24788999999999999999987653
No 218
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.29 E-value=0.00051 Score=61.48 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=66.4
Q ss_pred HHHHHHHh-cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCC--------CC
Q 038205 132 NQIIEALK-KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGW--------AL 202 (375)
Q Consensus 132 ~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--------~~ 202 (375)
+.++..+. ..+..-++|+|++|+|||||++.+....... ...+++.-.. -...+...++...... ..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEE-eecchhHHHHHHHhcccccccccccc
Confidence 33444443 3445689999999999999999999887642 1222221100 0001111233222211 00
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 203 TEKDEEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
+-.+.......+..+ .....+-++++|++...+.+..+...+ ..|..+|+||++..+..
T Consensus 175 ~v~~~~~k~~~~~~~--i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 175 DVLDGCPKAEGMMML--IRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccchHHHHHHHH--HHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 000001111122221 222478899999997766555554333 24788999999876644
No 219
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.29 E-value=0.00091 Score=59.57 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999988754
No 220
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.27 E-value=0.0016 Score=56.12 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|.|++|+|||||++.+.....
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3567999999999999999999976543
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.26 E-value=0.0018 Score=55.86 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHh-CC---C---CCCCCHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSL-GW---A---LTEKDEEDRADRL 214 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~---~---~~~~~~~~~~~~l 214 (375)
...++.|+|++|+|||+++.++....... -..++|++... ++...+.+ +.... .. . ....+..+....+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 36799999999999999999987766532 45678888765 44444333 33321 00 0 0111222332223
Q ss_pred HHHhhhcCC-CcEEEEEeCCC
Q 038205 215 RLMFSESKS-RKILVILDDVW 234 (375)
Q Consensus 215 ~~~~~~l~~-kr~LlVlDdv~ 234 (375)
..+...+.. +.-++|+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 332224433 45699999875
No 222
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.26 E-value=0.001 Score=66.12 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....++|+|++|+|||||++.+......
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999999776543
No 223
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.26 E-value=0.0011 Score=55.86 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+.....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999988754
No 224
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0028 Score=59.16 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+++|+++|++|+||||++..++.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999877653
No 225
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0033 Score=61.87 Aligned_cols=130 Identities=20% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
....+.++||+|.|||.||+.+++..+. .|-.+.+-. +.. .+-..+.......+.. +.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v~~~~-------------l~s----k~vGesek~ir~~F~~---A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RFISVKGSE-------------LLS----KWVGESEKNIRELFEK---AR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEeeCHH-------------Hhc----cccchHHHHHHHHHHH---HH
Confidence 4568999999999999999999996653 233222110 100 1111222333333333 55
Q ss_pred CCCcEEEEEeCCCCccccc-------------ccCCCCC--CCCCCcEEEEEeCChhHHhh---h--CCCCcccCCCCCh
Q 038205 222 KSRKILVILDDVWKELDLE-------------TIGIPVG--DRDNCCKILLTTRLQQVCYR---M--GCDPRIKLDALDQ 281 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~~~~~-------------~l~~~l~--~~~~gs~IivTTr~~~v~~~---~--~~~~~~~l~~L~~ 281 (375)
+..+++|.+|+++....+. .+...+. ....+..||-||........ . .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 6789999999987532111 1111121 12233445555554433221 1 2236788899999
Q ss_pred HHHHHHHHHHcC
Q 038205 282 AEGLDLLRKHAG 293 (375)
Q Consensus 282 ~e~~~Lf~~~~~ 293 (375)
++..+.|+.+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999999886
No 226
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0031 Score=54.95 Aligned_cols=86 Identities=27% Similarity=0.334 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 126 TTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 126 gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|-.+.+++|.+... -+.+.-|.++||+|.|||-+|+.|+|+.. ..|-.++ -.
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfirvi-------------gs 245 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVI-------------GS 245 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeeh-------------hH
Confidence 44566666665432 23467789999999999999999999766 3343332 11
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVW 234 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~ 234 (375)
++.+.. ..+.+.+++++++-- ..|-|++.||+++
T Consensus 246 elvqky--------vgegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ELVQKY--------VGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHH--------hhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 222221 123345556655544 4578999999875
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.024 Score=53.44 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC--CccEEEEEEecCC-CChhHHHHHHHHHhCCCCCCC-CHHHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN--IFDKVGIATVSQD-PSIINVQSELVKSLGWALTEK-DEEDRADRLRLM 217 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~ 217 (375)
.+++|.++|+.|+||||.+..++....... .-..+..++.... .....-++..++.++.+.... ........+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~-- 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT-- 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH--
Confidence 357999999999999999999887765321 1123444444321 122233555566565543322 2233333232
Q ss_pred hhhcCCCcEEEEEeCCC
Q 038205 218 FSESKSRKILVILDDVW 234 (375)
Q Consensus 218 ~~~l~~kr~LlVlDdv~ 234 (375)
.+ .+.-++++|...
T Consensus 251 --~~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 --QS-KDFDLVLVDTIG 264 (388)
T ss_pred --Hh-CCCCEEEEcCCC
Confidence 33 345588888764
No 228
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.23 E-value=0.00016 Score=74.37 Aligned_cols=178 Identities=18% Similarity=0.214 Sum_probs=91.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh--hcC------------CccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR--QNN------------IFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 207 (375)
+.+++.|.||++.||||+.+.+.-..- ..+ .|+. ++..++...++..-+..+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStf------------- 391 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTF------------- 391 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHH-------------
Confidence 356889999999999999998854321 111 1111 222222222211111111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc---cccc----CCCCCCCCCCcEEEEEeCChhHHhhhCCCCcc---cCC
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKELD---LETI----GIPVGDRDNCCKILLTTRLQQVCYRMGCDPRI---KLD 277 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~IivTTr~~~v~~~~~~~~~~---~l~ 277 (375)
......+..++..+ ..+-|+++|++....+ -..+ ...+. ..|+.+|+||+..++.........+ .+.
T Consensus 392 S~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 392 SGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 11112222322234 5777999999875422 1112 11221 2468999999998876654332111 111
Q ss_pred CCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038205 278 ALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALDKLQN 343 (375)
Q Consensus 278 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~~l~~ 343 (375)
++. +... +...+.... +. ...|-.|++++ |+|-.+..-|.-+........+.++..|..
T Consensus 469 -~d~-~~l~-~~Ykl~~G~--~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 469 -FDE-ETLR-PTYRLLIGI--PG-KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred -Eec-CcCc-EEEEEeeCC--CC-CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111 1000 111111111 11 34566777777 899988888877766555667777776655
No 229
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.23 E-value=0.002 Score=56.89 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3567999999999999999999987653
No 230
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.22 E-value=0.0018 Score=63.47 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=69.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-C-----CccEEEEEEecCCC-----Ch------------hHHHHHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-N-----IFDKVGIATVSQDP-----SI------------INVQSELVKS 197 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~-----~f~~~~wv~~~~~~-----~~------------~~~~~~i~~~ 197 (375)
+....|+|+|++|+|||||.+.+....... + .--.+.+....... ++ ..-.+..+.+
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 356799999999999999999996655432 1 11112222221110 11 2333344444
Q ss_pred hCCCCCC-------CCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCcccc---cccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 198 LGWALTE-------KDE-EDRADRLRLMFSESKSRKILVILDDVWKELDL---ETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 198 l~~~~~~-------~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
++...+. .+. +...-.+.. .+-..+-+||||+..+.-+. +.+...+... ...||+.|++.....
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~---ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAK---LLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLD 500 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHH---HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHH
Confidence 4322111 111 222233333 55668889999988765332 2232233222 247999999988877
Q ss_pred hhCCCCcccCC
Q 038205 267 RMGCDPRIKLD 277 (375)
Q Consensus 267 ~~~~~~~~~l~ 277 (375)
.... .++.+.
T Consensus 501 ~va~-~i~~~~ 510 (530)
T COG0488 501 RVAT-RIWLVE 510 (530)
T ss_pred hhcc-eEEEEc
Confidence 6543 344444
No 231
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.004 Score=62.98 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCc----cEEEEEEecCCCChhHHHHHH
Q 038205 119 RFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF----DKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 119 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i 194 (375)
..+.+.+||++++.+++..|....-.--.++|.+|+|||+++.-++.+.-..+-- +..++. . ++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L-----------D~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L-----------DL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e-----------cH
Confidence 3457789999999999999965432233568999999999999998887643211 111111 0 01
Q ss_pred HHHh-CCCCCCCCHHHHHHHHHHHhhhcC-CCcEEEEEeCCCCcc--------cccccCCCCCCCCCC--cEEEEEeCCh
Q 038205 195 VKSL-GWALTEKDEEDRADRLRLMFSESK-SRKILVILDDVWKEL--------DLETIGIPVGDRDNC--CKILLTTRLQ 262 (375)
Q Consensus 195 ~~~l-~~~~~~~~~~~~~~~l~~~~~~l~-~kr~LlVlDdv~~~~--------~~~~l~~~l~~~~~g--s~IivTTr~~ 262 (375)
..-+ |..... +..+.+..++..++ .++.+|++|+++..- ..+.-...-|.-..| -.|-.||-++
T Consensus 235 g~LvAGakyRG----eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E 310 (786)
T COG0542 235 GSLVAGAKYRG----EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE 310 (786)
T ss_pred HHHhccccccC----cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH
Confidence 1111 111111 22223333222443 358999999986531 133321111222223 3444566543
Q ss_pred hH------HhhhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 263 QV------CYRMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 263 ~v------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
.- +........+.+...+.+++..+++...
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 21 1122344678899999999999987543
No 232
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.22 E-value=0.024 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.+|.++|++|+||||++..++...+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998876653
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00056 Score=58.30 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....+++|+|++|+|||||++.+...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34679999999999999999999874
No 234
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.024 Score=57.69 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++++++|++|+||||++..+.....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999887664
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.0032 Score=55.50 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=50.8
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCH
Q 038205 130 ACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDE 207 (375)
Q Consensus 130 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 207 (375)
.+..+.++... .....+.++|++|+|||+|+..+++.....+ ..+++++ ..+++..+-.... ....+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~--~~~~~~ 153 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFS--NSETSE 153 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHh--hccccH
Confidence 44455554432 2235789999999999999999999876532 3445553 3444444443331 011111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCc
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKE 236 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~ 236 (375)
.. +.+ .+. +.-||||||+...
T Consensus 154 ~~----~l~---~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 154 EQ----LLN---DLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred HH----HHH---Hhc-cCCEEEEeCCCCC
Confidence 11 212 333 3448999999654
No 236
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.18 E-value=0.002 Score=63.17 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....|+|+|.+|+|||||.+.+......
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4679999999999999999999987753
No 237
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.17 E-value=0.038 Score=50.88 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.+.+++++|++|+||||++..++......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887743
No 238
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.17 E-value=0.0031 Score=57.87 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc----CCccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN----NIFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++-|+|++|+|||+|+.+++-..... ..-..++|++....+++..+. +++++++.... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 46789999999999999998876433211 112468899888777776654 45666654321 1123
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEEeCCC
Q 038205 208 EDRADRLRLMFSESK-SRKILVILDDVW 234 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~kr~LlVlDdv~ 234 (375)
+...+.+..+...+. .+--|+|+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 333334443332333 345589999875
No 239
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.0018 Score=54.35 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEE
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIA 179 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 179 (375)
.+.+|.+.|++|+||||+++.++...... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45699999999999999999999988642 4444444
No 240
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.0015 Score=57.81 Aligned_cols=74 Identities=30% Similarity=0.324 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...+.++|++|+|||+||..+++..... ...+++++++ +++..+-..... ..... ..+. .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~---~~~~~---~~l~----~l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN---GQSGE---KFLQ----EL- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc---cchHH---HHHH----Hh-
Confidence 4678999999999999999999988743 2334555443 444444433211 01111 1122 23
Q ss_pred CCcEEEEEeCCCC
Q 038205 223 SRKILVILDDVWK 235 (375)
Q Consensus 223 ~kr~LlVlDdv~~ 235 (375)
.+--||||||+..
T Consensus 162 ~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 CKVDLLVLDEIGI 174 (248)
T ss_pred cCCCEEEEcCCCC
Confidence 3556999999953
No 241
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.16 E-value=0.0045 Score=54.08 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhCCC----------CCCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLGWA----------LTEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~~~ 207 (375)
...++.|+|++|+|||+|+.+++....... .=..++|+.....++...+ .++....+.. ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCH
Confidence 467999999999999999999876653221 1145678877666554433 3333332211 011233
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l-~~kr~LlVlDdv~~ 235 (375)
++....+..+.... ..+.-|+|+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 44444555432222 23555999998753
No 242
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0013 Score=55.11 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=27.4
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 139 KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 139 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
...+..+++|.|++|.||||+.+.++.-....
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 34567899999999999999999999887653
No 243
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0008 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999854
No 244
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.16 E-value=0.002 Score=58.63 Aligned_cols=28 Identities=39% Similarity=0.627 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...++++.|++|+|||||.+.+....+.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4579999999999999999999887764
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.019 Score=56.82 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=82.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKS 223 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (375)
.-|.++|++|+|||.||..+......+ ++++..+ +++.+. +| .+.+...+.+.+ +-..
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~Ky---IG-----aSEq~vR~lF~r---A~~a 759 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKY---IG-----ASEQNVRDLFER---AQSA 759 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHH---hc-----ccHHHHHHHHHH---hhcc
Confidence 457899999999999999998876643 4555432 222222 22 223334444444 5556
Q ss_pred CcEEEEEeCCCCcc-------------cccccCCCCCC--CCCCcEEEEEeCChhHHhh--hCC---CCcccCCCCChHH
Q 038205 224 RKILVILDDVWKEL-------------DLETIGIPVGD--RDNCCKILLTTRLQQVCYR--MGC---DPRIKLDALDQAE 283 (375)
Q Consensus 224 kr~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~gs~IivTTr~~~v~~~--~~~---~~~~~l~~L~~~e 283 (375)
++|+|.||++++.. ...++...+.. +-.|..|+-.|...++.+. +.+ ++.+.-+.-++.+
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 99999999987531 12223222321 2356667754443333211 122 1333334456677
Q ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 284 GLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 284 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
-.++|......-. .+..-..+.++.+.+|.--|
T Consensus 840 Rl~il~~ls~s~~--~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 840 RLEILQVLSNSLL--KDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHhhccC--CccccchHHHhhhcCCCchh
Confidence 7888877653111 01122245667777776554
No 246
>PTZ00035 Rad51 protein; Provisional
Probab=97.15 E-value=0.0064 Score=56.44 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh---c-CCccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ---N-NIFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++.|+|++|+|||||+..++-.... . ..-..++|+.....++... +.+++++++.... ..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCH
Confidence 4678999999999999999988754431 0 1223566887766665555 4455555543211 1222
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSESK-SRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~kr~LlVlDdv~~ 235 (375)
++....+..+...+. .+--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 333444433322333 3456999998753
No 247
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.14 E-value=0.0011 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+++|.|++|+|||||.+.+....
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998876
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.14 E-value=0.0031 Score=55.15 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH----hCC---CCCCCCHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS----LGW---ALTEKDEEDRADRL 214 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~---~~~~~~~~~~~~~l 214 (375)
...++.|+|++|+|||+++.+++...... -..++|++.. .++...+ .++... +.. -....+..+....+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 46799999999999999999998766533 3567888776 4444332 233322 000 00112222333333
Q ss_pred HHHhhhcCCCcEEEEEeCCC
Q 038205 215 RLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 215 ~~~~~~l~~kr~LlVlDdv~ 234 (375)
..+...+..+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 33322333566799999874
No 249
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.13 E-value=0.0043 Score=53.94 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHh----CCC---CCCCCHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSL----GWA---LTEKDEEDRADRL 214 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l----~~~---~~~~~~~~~~~~l 214 (375)
...++.|.|++|+||||++.+++...... -..++|++....+. .-++++.... ... ....+..+....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 46789999999999999999998776432 23566776544433 3333333221 000 0111222333333
Q ss_pred HHHhhhcCCCcEEEEEeCCC
Q 038205 215 RLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 215 ~~~~~~l~~kr~LlVlDdv~ 234 (375)
..+...+..+.-++|+|.+.
T Consensus 94 ~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 94 QETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHhcCCcEEEEechH
Confidence 33222444446689999874
No 250
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.12 E-value=0.00078 Score=65.58 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=43.7
Q ss_pred CCCCCCccchHHHHHHHHHHH------hcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 118 PRFFSSFETTESACNQIIEAL------KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+..++|.++.+++|++.| .....+++.++||+|+||||||+.+.+-...
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 445567889999999999988 2345689999999999999999999987664
No 251
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.12 E-value=0.00031 Score=60.32 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh--cCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCC-C---HHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ--NNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEK-D---EEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~---~~~~~~~l~ 215 (375)
..+++.|.|++|.||||+.+.+....-- -+.| + +.......+...+...++...+.. . .......+.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----v--pa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~ 100 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----V--PAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETA 100 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----c--chhhcCccChhheeEecCCccccchhhhHHHHHHHHHH
Confidence 3579999999999999999988654321 1111 1 111111122333333332211100 0 011111222
Q ss_pred HHhhhcCCCcEEEEEeCCCCcc---c----ccccCCCCCCCCCCcEEEEEeCChhHHhhhC
Q 038205 216 LMFSESKSRKILVILDDVWKEL---D----LETIGIPVGDRDNCCKILLTTRLQQVCYRMG 269 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv~~~~---~----~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~ 269 (375)
.++ .+..++-|+++|+..... + ...+...+. ..|+.+|++|++.+++..+.
T Consensus 101 ~il-~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 101 YIL-DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHH-HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 322 234567899999985421 1 111212222 23789999999988877654
No 252
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0014 Score=64.51 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=85.0
Q ss_pred CccchHHHHHHHHHHHhc------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 123 SFETTESACNQIIEALKK------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
+-.|.++..+.|++++.- -+.++++++||+|+|||++++.++...... |- -+++..-.+..++--.--.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--Ff---RfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--FF---RFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--eE---EEeccccccHHhhccccee
Confidence 346788889999998732 257899999999999999999999887632 31 2233332222222111000
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---------cccccCCC---------CCC-CCCCcEEEE
Q 038205 197 SLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---------DLETIGIP---------VGD-RDNCCKILL 257 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~---------l~~-~~~gs~Iiv 257 (375)
. -..-+..+.+.+. ..+..+-|+.||+|+... .+-++..+ +.+ --.-|+|++
T Consensus 487 Y-----VGAMPGkiIq~LK----~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 487 Y-----VGAMPGKIIQCLK----KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred e-----eccCChHHHHHHH----hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 0 1111222333333 334456688899886421 11111111 100 011255554
Q ss_pred -EeCCh--hH-HhhhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 258 -TTRLQ--QV-CYRMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 258 -TTr~~--~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
.|-+. .+ ....+....|++.+...+|=..+-.+++
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33321 11 1223344678999999999888887765
No 253
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0017 Score=65.57 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCccchHHHHHHHHHHHhc-------C--CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 122 SSFETTESACNQIIEALKK-------D--STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
...+|.++.+..+.+.+.. + ........||.|+|||-||+.++...-... +..+-+..|. ..--.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSE----y~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSE----YMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHH----HHHHH
Confidence 3467899999998888732 1 245677899999999999999988664221 2222222221 11112
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcE-EEEEeCCCCc
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSESKSRKI-LVILDDVWKE 236 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~-LlVlDdv~~~ 236 (375)
.+.+-+|.+..=-..++ ...|.+ ..+.++| +++||++...
T Consensus 565 sVSrLIGaPPGYVGyee-GG~LTE---aVRr~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE-GGQLTE---AVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCCceecc-ccchhH---hhhcCCCeEEEechhhhc
Confidence 22233333222111122 233444 6666877 8999999753
No 254
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.11 E-value=0.0019 Score=65.61 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
-+....|+|+|.+|+|||||++.+..-...
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 356789999999999999999999766543
No 255
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.11 E-value=0.0026 Score=58.31 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||.+.+.....
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999987654
No 256
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.11 E-value=0.00026 Score=60.84 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..+++|+|++|.||||+.+.+...
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 369999999999999999999843
No 257
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.10 E-value=0.0013 Score=56.49 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....+++|+|++|+|||||++.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999886
No 258
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0024 Score=56.00 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3567999999999999999999987654
No 259
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.09 E-value=0.0047 Score=53.08 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+...+++|.|++|+|||||++.+......
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 45679999999999999999999887653
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00077 Score=54.26 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNN 171 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 171 (375)
...|+|.|++|+||||+++.+.+..+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 34689999999999999999999988654
No 261
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.07 E-value=0.00051 Score=58.93 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 038205 144 KMVGLHGLGGVGKTTLAKFVG 164 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~ 164 (375)
+++.|.|++|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 262
>PRK06547 hypothetical protein; Provisional
Probab=97.07 E-value=0.00086 Score=55.93 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 134 IIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 134 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+......+|+|.|++|+||||+|+.+.....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33344556778999999999999999999988754
No 263
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.07 E-value=0.0041 Score=55.45 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh----cCCccEEEEEEecCCCChhHHHHHHHHHhCCCC----------CCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ----NNIFDKVGIATVSQDPSIINVQSELVKSLGWAL----------TEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~ 207 (375)
...+.=|+|++|+|||.|+-+++-.... .+.=..++|++-...+....+. +|++..+... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3578999999999999999887654321 1223468999888877766554 5666543211 01223
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEEeCCC
Q 038205 208 EDRADRLRLMFSESK-SRKILVILDDVW 234 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~kr~LlVlDdv~ 234 (375)
.+....+..+...+. .+--|||+|.+.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 344444444333332 345599999875
No 264
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.06 E-value=0.00098 Score=58.50 Aligned_cols=30 Identities=40% Similarity=0.694 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
+...+++|.|++|+|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456799999999999999999999888754
No 265
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.05 E-value=0.0044 Score=57.03 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh---cC-CccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ---NN-IFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++.|+|++|+|||+|+..++..... .+ .-..++|+.....++... +.++++.++.... ..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 4679999999999999999988753321 11 123568888777666654 4445555543211 1122
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEEeCCC
Q 038205 208 EDRADRLRLMFSESK-SRKILVILDDVW 234 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~kr~LlVlDdv~ 234 (375)
++....+..+...+. .+--|||+|.+.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 333333333322333 355689999875
No 266
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.04 E-value=0.00057 Score=58.33 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
+|+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988753
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.04 E-value=0.025 Score=55.99 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=99.6
Q ss_pred ccchHHHHHHHHHHHh----c-CCCcEEEEEcCCCchHHHHHHHHHhhhhh---c---CCccEEEEEEecCCCChhHHHH
Q 038205 124 FETTESACNQIIEALK----K-DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ---N---NIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~---~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
...|+.+..+|-..+. . +....+=|.|-+|+|||.++..|.+.... + ..|+. +.++.-.-..+..+..
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHH
Confidence 4578999999888763 2 33558899999999999999999986652 2 23322 3333334456888999
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhh--cCCCcEEEEEeCCCCccc--ccccCCCCCC-CCCCcEEEEEeC-C-h---
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSE--SKSRKILVILDDVWKELD--LETIGIPVGD-RDNCCKILLTTR-L-Q--- 262 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~--l~~kr~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~IivTTr-~-~--- 262 (375)
.|...+.... .......+.+...+.. -..+.+++++|+++..-. -+.+...|.| ..++|+++|.+= + .
T Consensus 477 ~I~~~lsg~~--~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 477 KIWEALSGER--VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHhcccCc--ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 9999886432 2334445555552221 123678999998864311 1111112222 345677655432 1 1
Q ss_pred ------hHHhhhCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 263 ------QVCYRMGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 263 ------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
.++..++ ...+.+.|.+..+..++...++.
T Consensus 555 Er~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 555 ERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred HHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhc
Confidence 1122222 14567788888888887777664
No 268
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.03 E-value=0.0051 Score=50.34 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=29.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
++.|+|++|+||||++..+...... .-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 3689999999999999999887754 23456666665443
No 269
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.03 E-value=0.048 Score=54.27 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 121 FSSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+..++|....+.++.+.+.. .....|.|+|++|+|||++|+.+.+...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 35677888888887776632 3345678999999999999999988654
No 270
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.03 E-value=0.0037 Score=53.97 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
...+.++|.|++|+|||+|+..+.+.... +.++++.+.+.. ...++.+++...-.. .....+. .
T Consensus 13 g~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~----d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 13 GRGQRIGIFGGAGVGKTVLLQEIANNQDA----DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHCTT----TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred ccCCEEEEEcCcccccchhhHHHHhcccc----cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 35689999999999999999999988752 334677676543 455555555432100 1111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
...-.+.+++.. +++.+|+++||+.
T Consensus 89 ~~~~a~t~AEyfrd-~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRD-QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEETHH
T ss_pred hhccchhhhHHHhh-cCCceeehhhhhH
Confidence 112233444444 7899999999974
No 271
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.03 E-value=0.0015 Score=60.88 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII-NVQSELVKSLGWALTEKDEEDRADRLRLMFSE 220 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 220 (375)
....|.|.|+.|+||||+++.+.+.... .....++. +..+.... .-...+..+- .. ..........+.. .
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~E~~~~~~~~~i~q~--ev-g~~~~~~~~~l~~---~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPIEYVHRNKRSLINQR--EV-GLDTLSFANALRA---A 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCChhhhccCccceEEcc--cc-CCCCcCHHHHHHH---h
Confidence 3578999999999999999998876542 22333333 22211110 0000000000 00 1111234455666 7
Q ss_pred cCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 221 SKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
+...+=.|++|++.+.+.+..... ....|..++.|.+..+...
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALT---AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence 888999999999987766543211 2345667888888755543
No 272
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.02 E-value=0.00026 Score=59.94 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~ 165 (375)
++.|.|++|.||||+++.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 273
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.02 E-value=0.0054 Score=56.83 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh----cCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ----NNIFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++-|+|++|+|||+|+.+++-.... ...-..++|+.....|.+..+. +++++++.... ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence 4578889999999999999988643321 1122468899888877776655 45666654321 1223
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEEeCCC
Q 038205 208 EDRADRLRLMFSESK-SRKILVILDDVW 234 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~kr~LlVlDdv~ 234 (375)
+.....+..+...+. .+--|||+|.+.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 333333333222332 345589999875
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.02 E-value=0.003 Score=64.97 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....++|+|++|+|||||++.+......
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45679999999999999999999776543
No 275
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.02 E-value=0.002 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
++..|+|++|.|||++.+.+.-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999998643
No 276
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.01 E-value=0.004 Score=50.90 Aligned_cols=116 Identities=25% Similarity=0.282 Sum_probs=58.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC---CCChhHHHHHHHHHh-----CCC--CC-CCCHHH---
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ---DPSIINVQSELVKSL-----GWA--LT-EKDEED--- 209 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~--~~-~~~~~~--- 209 (375)
..|-|++.+|.||||+|-...-+....+ + .+.++..-. .......++.+ ..+ +.. .. ....++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 5788899999999999988877665332 2 233322221 22333333333 001 110 00 111111
Q ss_pred HHHHHHHHhhhcCC-CcEEEEEeCCCCc-----ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 210 RADRLRLMFSESKS-RKILVILDDVWKE-----LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 210 ~~~~l~~~~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
....+....+.+.. .--|||||++-.. ...+.+...+.....+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122222224444 4459999997543 22333333344445567999999984
No 277
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0031 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...-.|+|++|+|||||++.+..+..
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcccC
Confidence 45678999999999999999876554
No 278
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.00 E-value=0.00061 Score=58.83 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999998765
No 279
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00064 Score=58.74 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 280
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0045 Score=61.65 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCccchHHHHHHHHHHHhc---------C---CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhH
Q 038205 122 SSFETTESACNQIIEALKK---------D---STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIIN 189 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 189 (375)
.+..|-++.+.+|.+-+.- . ...=|.++||+|.|||-+|++|+....-. |++|..+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----H
Confidence 4566788888888877632 1 13468899999999999999999877632 4555432 2
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 190 VQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 190 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
++... + .++.+...+.+.+ +-...+|+|.||++++
T Consensus 741 LLNMY---V-----GqSE~NVR~VFer---AR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMY---V-----GQSEENVREVFER---ARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH---h-----cchHHHHHHHHHH---hhccCCeEEEeccccc
Confidence 22111 1 2334444444554 5567999999999875
No 281
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.99 E-value=0.0091 Score=53.20 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=60.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh--cCCccEEEEEEecCCC-ChhHHHHHHHHHhCCC-------CCCCCH-H-
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ--NNIFDKVGIATVSQDP-SIINVQSELVKSLGWA-------LTEKDE-E- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~-~- 208 (375)
...+.++|.|..|+|||+|+..+.+.... .+.-+.++++-+.+.. +..++..++...=... ..+.+. .
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 45789999999999999999998876541 1234567777777654 4555666555431110 111111 1
Q ss_pred ----HHHHHHHHHhhhcCCCcEEEEEeCCCCc
Q 038205 209 ----DRADRLRLMFSESKSRKILVILDDVWKE 236 (375)
Q Consensus 209 ----~~~~~l~~~~~~l~~kr~LlVlDdv~~~ 236 (375)
.....+.+++..-.++++|+++||+...
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 2234455655444589999999998643
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.99 E-value=0.0032 Score=57.68 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCC------CCCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWAL------TEKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 215 (375)
..+++-|+|++|+||||||.+++...... -..++|+.....++. ..+++++.+. ...+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP-----VYAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH-----HHHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 46799999999999999999987665432 345678876665553 2344444321 1223344444444
Q ss_pred HHhhhc-CCCcEEEEEeCCC
Q 038205 216 LMFSES-KSRKILVILDDVW 234 (375)
Q Consensus 216 ~~~~~l-~~kr~LlVlDdv~ 234 (375)
. .. .+..-++|+|.+.
T Consensus 127 ~---li~s~~~~lIVIDSva 143 (325)
T cd00983 127 S---LVRSGAVDLIVVDSVA 143 (325)
T ss_pred H---HHhccCCCEEEEcchH
Confidence 3 22 3456699999875
No 283
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.0016 Score=64.28 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=49.9
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS 219 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 219 (375)
.+..++..++|++|+||||||..++++... .++=++.|..-+...+-..|...+.. .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~-----------------~s 380 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQN-----------------HS 380 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhh-----------------cc
Confidence 345679999999999999999999987652 24555666655555554444433311 11
Q ss_pred hcC--CCcEEEEEeCCCCc
Q 038205 220 ESK--SRKILVILDDVWKE 236 (375)
Q Consensus 220 ~l~--~kr~LlVlDdv~~~ 236 (375)
.+. +++.-||+|+++..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 332 57778999998754
No 284
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.98 E-value=0.0058 Score=58.69 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
...+.++|.|.+|+|||||+.++.+..... +-+.++++-+.... ...+++..+...-.. ...+.+. .
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 457899999999999999999988877643 45667777666543 455566655543211 1111121 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
.....+.+++..-.++.+||++|++.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 22234445443345899999999984
No 285
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.98 E-value=0.0036 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988664
No 286
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.98 E-value=0.0022 Score=53.62 Aligned_cols=26 Identities=42% Similarity=0.522 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
++.++|++|+||||++..+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999998877643
No 287
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0094 Score=58.67 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=103.5
Q ss_pred CCCccchHHHH---HHHHHHHhcCC---------CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 121 FSSFETTESAC---NQIIEALKKDS---------TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 121 ~~~~~gr~~~~---~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
+...-|.++.. .++++.|.++. ++-+.++||+|.|||.||+.+.....+. | .++|.+.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~--- 218 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD--- 218 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh---
Confidence 44455666554 55555565542 5678999999999999999999988764 2 1122110
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCCCCC--
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVGDRD-- 250 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~~~-- 250 (375)
+-++.- ........+...+ +.+.-++++++|.++... .+.++........
T Consensus 219 --FVemfV-------GvGAsRVRdLF~q---Akk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 --FVEMFV-------GVGASRVRDLFEQ---AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred --hhhhhc-------CCCcHHHHHHHHH---hhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 001111 1112333444444 667788999999876421 2333333333332
Q ss_pred CCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH--HHH-
Q 038205 251 NCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI--KAV- 322 (375)
Q Consensus 251 ~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai--~~i- 322 (375)
.|..||-.|..++|... + ..+..+.++..+-..-.++++-++-.....+. .+. ..|++.+-|.-.|- +.+
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vdl-~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VDL-KKIARGTPGFSGADLANLLN 364 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CCH-HHHhhhCCCcccchHhhhHH
Confidence 34344444544544322 1 22355666666656666677655542222221 112 22777777665542 222
Q ss_pred -HHHhc---CC---CHHHHHHHHHHhhhc
Q 038205 323 -GSALR---LR---TADEWNVALDKLQNA 344 (375)
Q Consensus 323 -~~~L~---~~---~~~~w~~~l~~l~~~ 344 (375)
|.++. ++ +..+...+.+++-..
T Consensus 365 EAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 365 EAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred HHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 33332 21 445555555555443
No 288
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.98 E-value=0.0022 Score=64.63 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
+....++|+|++|+|||||++.+....
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999997765
No 289
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.00056 Score=59.61 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh--hcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC----CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR--QNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT----EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 215 (375)
+.+++.|.|++|.||||+.+.+....- ..+.| +.. ..........++..++.... ..+.......+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~-----vpa--~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCF-----VPC--DSADIPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCC-----cCc--ccEEEeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 467999999999999999998764311 11111 111 00111112222222221110 111112222333
Q ss_pred HHhhhcCCCcEEEEEeCC---CCccc-----ccccCCCCCCCCCCcEEEEEeCChhHHhhhCCCCc---ccCCCCChH--
Q 038205 216 LMFSESKSRKILVILDDV---WKELD-----LETIGIPVGDRDNCCKILLTTRLQQVCYRMGCDPR---IKLDALDQA-- 282 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv---~~~~~-----~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~~~~~---~~l~~L~~~-- 282 (375)
.+++.+ .++-|++||+. .+..+ |..+ ..+.. ..|+.+|+||+..++...+..... .++.....+
T Consensus 102 ~il~~~-~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~ 178 (222)
T cd03285 102 AILKSA-TENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDAS 178 (222)
T ss_pred HHHHhC-CCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCC
Confidence 322223 56889999999 33221 1111 11211 246789999998777654432211 122111111
Q ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhc
Q 038205 283 EGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALR 327 (375)
Q Consensus 283 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~ 327 (375)
+.. .|...+...... ...+-.+++.+ |+|-.+..-|.-+.
T Consensus 179 ~~~-~~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 179 RTL-TMLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred CcE-eEEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 111 122222111111 34466676666 88888877665443
No 290
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.96 E-value=0.0045 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..++-.|+|.+|+|||||...+.-.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 4578999999999999999988644
No 291
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0077 Score=53.49 Aligned_cols=170 Identities=22% Similarity=0.253 Sum_probs=85.1
Q ss_pred CccchHHHHHHHHHHH---------hcC---CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHH
Q 038205 123 SFETTESACNQIIEAL---------KKD---STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINV 190 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l---------~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 190 (375)
..-|-+...+.|.+.. ..+ .-+-|.++||+|.|||.||+.|+...... |.++|... +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehHH----H
Confidence 3445666666665543 111 25678999999999999999999876622 34444431 1
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc---------cccccC----C---CCCCCCCCcE
Q 038205 191 QSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL---------DLETIG----I---PVGDRDNCCK 254 (375)
Q Consensus 191 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---------~~~~l~----~---~l~~~~~gs~ 254 (375)
.. +-++ ..+.+...|.++ +-+.++-+|.+|+++... .-+.|. . -......|.-
T Consensus 203 vS---KWmG------ESEkLVknLFem--ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 203 VS---KWMG------ESEKLVKNLFEM--ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HH---HHhc------cHHHHHHHHHHH--HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 11 1111 012222222221 445789999999986421 111111 1 1223344555
Q ss_pred EEEEeCChhHHhhh---CCCCcccCCCCChH-HHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 255 ILLTTRLQQVCYRM---GCDPRIKLDALDQA-EGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 255 IivTTr~~~v~~~~---~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
|+=.|..+-+.... .....|.+ ||++. .-..+|+-+++... ...-....+++.++..|.-
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCCCC
Confidence 55566654443221 11122333 33333 33456666665322 2222344566777776553
No 292
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.00097 Score=57.99 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
..+++.|.|++|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 293
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0044 Score=52.48 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+.++.||+|+||||+.+.+.....
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4567999999999999999998866543
No 294
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.94 E-value=0.0042 Score=59.02 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=54.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
.....++|+|++|+|||||++.+.+... .+.++.+-+.+.. ...++..+++..-+. ...+.+. .
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3567999999999999999999986543 2455555565544 444555555433211 1111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 236 a~~~A~tiAEyfrd-~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRD-QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEEcChHH
Confidence 122334554433 58999999999854
No 295
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.94 E-value=0.0087 Score=55.81 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcC----CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-CChhHHHHHHHHHhCCCC
Q 038205 128 ESACNQIIEALKKD----STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-PSIINVQSELVKSLGWAL 202 (375)
Q Consensus 128 ~~~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 202 (375)
.+....+..++..+ ..++|.++||.|+||||....++........-..+..++...- -...+-++..++-++.+.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 34445555555443 3789999999999999755544444432222334555554322 133344445555555554
Q ss_pred CC-CCHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 038205 203 TE-KDEEDRADRLRLMFSESKSRKILVILDDV 233 (375)
Q Consensus 203 ~~-~~~~~~~~~l~~~~~~l~~kr~LlVlDdv 233 (375)
.. .++.+....+. .+.+. -++.+|-+
T Consensus 264 ~vv~~~~el~~ai~----~l~~~-d~ILVDTa 290 (407)
T COG1419 264 EVVYSPKELAEAIE----ALRDC-DVILVDTA 290 (407)
T ss_pred EEecCHHHHHHHHH----HhhcC-CEEEEeCC
Confidence 32 34445544444 33333 35556644
No 296
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.2 Score=43.87 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 122 SSFETTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|-+..+++|.+.+- -..+.-+..+||+|.|||-+|+..+....
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 445677888888888751 12366788999999999999999877655
No 297
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.93 E-value=0.003 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+.+|+|.|++|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876654
No 298
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.93 E-value=0.0029 Score=62.84 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999999977654
No 299
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.92 E-value=0.0033 Score=65.51 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=35.6
Q ss_pred CccchHHHHHHHHHHHhc-------C--CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK-------D--STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.+..++.+.+.+.. + ...++.++||+|+|||.||+.+....-
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456888888888887632 1 134689999999999999999987764
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.0063 Score=60.49 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999998654
No 301
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.0063 Score=52.40 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=37.7
Q ss_pred CCCCccchHHHHHHHHHHH----hcCCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 120 FFSSFETTESACNQIIEAL----KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.+...+|.+...+.|.+-- ..-...-|.+||.-|.|||+|++.+.+.....
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3455677777777666542 22344578899999999999999999988754
No 302
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.91 E-value=0.0057 Score=49.97 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh-------------------cCCcc--EEEEEEec-----C------------
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ-------------------NNIFD--KVGIATVS-----Q------------ 183 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~--~~~wv~~~-----~------------ 183 (375)
....++|+|++|+|||||...++.-... +..|. .+.+|.-| .
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 4568999999999999998876543221 01111 12222111 0
Q ss_pred -----CCChhHHHHHHHHHhCCCC-------CCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc------ccccccCCC
Q 038205 184 -----DPSIINVQSELVKSLGWAL-------TEKDEEDRADRLRLMFSESKSRKILVILDDVWKE------LDLETIGIP 245 (375)
Q Consensus 184 -----~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~------~~~~~l~~~ 245 (375)
..+.....+..+.+++... .-...++..-.+.+ .+...+-+|+-|+-... ....++...
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR---Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ 191 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR---AFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH---HhcCCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence 1123344556666665321 11233455556666 88889999999976422 223333223
Q ss_pred CCCCCCCcEEEEEeCChhHHhhhCCC
Q 038205 246 VGDRDNCCKILLTTRLQQVCYRMGCD 271 (375)
Q Consensus 246 l~~~~~gs~IivTTr~~~v~~~~~~~ 271 (375)
+. ...|..+++.|+++.++..|...
T Consensus 192 ln-re~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 192 LN-RERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred Hh-hhcCceEEEEeCCHHHHHhhhhe
Confidence 32 35688999999999999877643
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.90 E-value=0.076 Score=54.54 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=34.9
Q ss_pred CCccchHHHHHHHHHHHh--cCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 122 SSFETTESACNQIIEALK--KDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..++|+...+..+.+.+. .....-|.|+|++|+|||++|+.+.+...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 456677777777665543 23445789999999999999999987653
No 304
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0031 Score=64.55 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=35.5
Q ss_pred ccchHHHHHHHHHHHhc--------C-CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALKK--------D-STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~--------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.++.++.|...+.. + ....+.++||+|+|||++|+.+.....
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56888888888887742 1 134688999999999999999988763
No 305
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.89 E-value=0.0035 Score=58.81 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+|||||.+.+......
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4579999999999999999999876543
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.88 E-value=0.0028 Score=56.75 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHH
Q 038205 129 SACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEE 208 (375)
Q Consensus 129 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 208 (375)
+..+.+.+++ ......+.|.|+.|+||||+++.+.+..... -..++.+.-+.......+ .++. .......
T Consensus 67 ~~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iitiEdp~E~~~~~~-----~q~~--v~~~~~~ 136 (264)
T cd01129 67 ENLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITVEDPVEYQIPGI-----NQVQ--VNEKAGL 136 (264)
T ss_pred HHHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECCCceecCCCc-----eEEE--eCCcCCc
Confidence 3444444444 3445689999999999999999887765421 112222221111111110 0111 1111112
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 209 DRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 209 ~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
.....+.. .++..+-.++++++.+.+....+... ...|..++-|.+-.+...
T Consensus 137 ~~~~~l~~---~lR~~PD~i~vgEiR~~e~a~~~~~a---a~tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 137 TFARGLRA---ILRQDPDIIMVGEIRDAETAEIAVQA---ALTGHLVLSTLHTNDAPG 188 (264)
T ss_pred CHHHHHHH---HhccCCCEEEeccCCCHHHHHHHHHH---HHcCCcEEEEeccCCHHH
Confidence 34555666 77788899999999887654432212 123445666666554433
No 307
>PRK14974 cell division protein FtsY; Provisional
Probab=96.87 E-value=0.0097 Score=55.01 Aligned_cols=57 Identities=28% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC--ChhHHHHHHHHHhCCC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP--SIINVQSELVKSLGWA 201 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~ 201 (375)
++.+|.++|++|+||||++..++......+ + .++.+.. ..+ ....-++.....++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAG-DTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecC-CcCcHHHHHHHHHHHHHcCCc
Confidence 467999999999999999999888776432 3 2333322 222 2333455566666654
No 308
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.87 E-value=0.00085 Score=52.77 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~ 167 (375)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998885
No 309
>PHA00729 NTP-binding motif containing protein
Probab=96.86 E-value=0.0015 Score=56.40 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 133 QIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 133 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
++.+.+...+...|.|+|++|+||||||..+.+..-
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555555666899999999999999999988753
No 310
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.86 E-value=0.0053 Score=56.25 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCC------CCCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWAL------TEKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 215 (375)
..+++-|+|++|+||||||.++....... -..++|+.....++.. .+++++... ...+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46799999999999999999887766532 2456677665544432 345554321 1223344444443
Q ss_pred HHhhhc-CCCcEEEEEeCCCC
Q 038205 216 LMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l-~~kr~LlVlDdv~~ 235 (375)
. .. .+..-++|+|.+..
T Consensus 127 ~---li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 T---LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred H---HhhccCCcEEEEcchhh
Confidence 3 33 24566999998753
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.86 E-value=0.011 Score=51.96 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=33.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLG 199 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 199 (375)
...++.|.|++|+||||++.++.......+ ..+++++ ...+...+++.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 456999999999999999866655443222 2345554 333556666665 3444
No 312
>PRK08233 hypothetical protein; Provisional
Probab=96.86 E-value=0.00094 Score=56.19 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|+|.|++|+||||||+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 313
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.85 E-value=0.0033 Score=63.21 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 4578999999999999999999976654
No 314
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.06 Score=49.02 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhh--------hhcCCccEEEEEEe-cCCCChhHHHHHHHHHhCC
Q 038205 131 CNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQL--------RQNNIFDKVGIATV-SQDPSIINVQSELVKSLGW 200 (375)
Q Consensus 131 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 200 (375)
+..+.+.+..+. .++..++|+.|.||+++|..+.+.. ....+-+...++.. ....... -.+++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd-~Ir~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKS-EFLSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHH-HHHHHHHHhcc
Confidence 344555555544 5677899999999999999998776 11111112222211 1111111 11122222210
Q ss_pred CCCCCCHHHHHHHHHHHhhh-cCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCC-hhHHhh-hCCCCccc
Q 038205 201 ALTEKDEEDRADRLRLMFSE-SKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRL-QQVCYR-MGCDPRIK 275 (375)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~-l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~ 275 (375)
.. -.+++-++|+|+++... ....+...+..-.+.+.+|++|.+ ..+... ......++
T Consensus 84 ------------------~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 ------------------SSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred ------------------CCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 01 12577788999986542 233333333333345666665544 444433 33446889
Q ss_pred CCCCChHHHHHHHHHH
Q 038205 276 LDALDQAEGLDLLRKH 291 (375)
Q Consensus 276 l~~L~~~e~~~Lf~~~ 291 (375)
+.++++++....+...
T Consensus 146 f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 146 VKEPDQQKILAKLLSK 161 (299)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999998877654
No 315
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.84 E-value=0.01 Score=48.30 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
++.|+|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 316
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.84 E-value=0.0065 Score=50.30 Aligned_cols=117 Identities=16% Similarity=0.057 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEE--EEEecCCCChhHHHHHHHHHh-----CC--CCCCCCHH----H
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVG--IATVSQDPSIINVQSELVKSL-----GW--ALTEKDEE----D 209 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l-----~~--~~~~~~~~----~ 209 (375)
...|-|++..|.||||.|-.+.-+....+ +...+ |+...........+..+ .+ +. .+...+.. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 36888999999999999988877665432 22211 33222222333344332 11 11 11111111 1
Q ss_pred HHHHHHHHhhhcCCC-cEEEEEeCCCCc-----ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 210 RADRLRLMFSESKSR-KILVILDDVWKE-----LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 210 ~~~~l~~~~~~l~~k-r~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
....+....+.+... --|||||++-.. -..+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 112222222244444 449999997532 22333333444455667999999974
No 317
>PTZ00301 uridine kinase; Provisional
Probab=96.84 E-value=0.00095 Score=57.52 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|+|.|++|+||||||+.+.....
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH
Confidence 5899999999999999999887764
No 318
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.83 E-value=0.001 Score=46.32 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
+|.|.|++|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 319
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.83 E-value=0.0029 Score=50.70 Aligned_cols=41 Identities=34% Similarity=0.296 Sum_probs=29.3
Q ss_pred EEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHH
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQ 191 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 191 (375)
|.++|++|+|||+||+.++..... ...-+.+++..+..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccce
Confidence 678999999999999999998832 22334566666655544
No 320
>PRK07667 uridine kinase; Provisional
Probab=96.83 E-value=0.0019 Score=55.06 Aligned_cols=38 Identities=32% Similarity=0.603 Sum_probs=28.8
Q ss_pred HHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 132 NQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 132 ~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.|.+.+.. +...+|+|.|++|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444433 33469999999999999999999988764
No 321
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.82 E-value=0.0046 Score=62.25 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....++|+|++|+|||||++.+......
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 35678999999999999999999876653
No 322
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.82 E-value=0.005 Score=64.28 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=35.4
Q ss_pred CccchHHHHHHHHHHHhc-------CC--CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK-------DS--TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.+..+..+...+.. ++ ...+.++||+|+|||+||+.+.+..-
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 467888888888887642 11 23567899999999999999988653
No 323
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.82 E-value=0.001 Score=53.49 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.0056 Score=57.81 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998755
No 325
>PRK06921 hypothetical protein; Provisional
Probab=96.81 E-value=0.0046 Score=55.43 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT 180 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 180 (375)
...-+.++|++|+|||+|+..+++...... -..+++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEE
Confidence 356799999999999999999999876431 23345554
No 326
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.81 E-value=0.016 Score=53.81 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 125 ETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 125 ~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|....+.++.+.+.. ....-|.|+|.+|+||+++|+.+.....
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 3444555555554422 3345789999999999999999987544
No 327
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.80 E-value=0.0049 Score=57.27 Aligned_cols=146 Identities=16% Similarity=0.250 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHhc-----------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC--cc-EEEEEE-----
Q 038205 126 TTESACNQIIEALKK-----------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI--FD-KVGIAT----- 180 (375)
Q Consensus 126 gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~-~~~wv~----- 180 (375)
+-..++..|.+.+.. ....++.|+|.+|+||||+.+++......... |. ..--+.
T Consensus 375 ~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt 454 (593)
T COG2401 375 GLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT 454 (593)
T ss_pred cCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc
Confidence 345566677666522 13568999999999999999999877653211 10 001111
Q ss_pred ----ec----CCCChhHHHHHHHHHhCC-------------C--------CCCC-CHHHHHHHHHHHhhhcCCCcEEEEE
Q 038205 181 ----VS----QDPSIINVQSELVKSLGW-------------A--------LTEK-DEEDRADRLRLMFSESKSRKILVIL 230 (375)
Q Consensus 181 ----~~----~~~~~~~~~~~i~~~l~~-------------~--------~~~~-~~~~~~~~l~~~~~~l~~kr~LlVl 230 (375)
++ ..++-..++.++.+..+. . ..+. +...-...|.+ .+..+.-+++.
T Consensus 455 ~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAk---llaerpn~~~i 531 (593)
T COG2401 455 VSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAK---LLAERPNVLLI 531 (593)
T ss_pred hhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHH---HHhcCCCcEEh
Confidence 11 112222455544443332 1 0111 11122233444 77778789999
Q ss_pred eCCCCc-ccccc--cCCCCC--CCCCCcEEEEEeCChhHHhhhCCCCcc
Q 038205 231 DDVWKE-LDLET--IGIPVG--DRDNCCKILLTTRLQQVCYRMGCDPRI 274 (375)
Q Consensus 231 Ddv~~~-~~~~~--l~~~l~--~~~~gs~IivTTr~~~v~~~~~~~~~~ 274 (375)
|..... +.... +...+. ....|+.+++.|+.+++.+.+.++..+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 987643 11111 111111 123578888888888888777665443
No 328
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.79 E-value=0.018 Score=53.33 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 122 SSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..++|+...+.++.+.+.. ....-|.|+|..|+||+++|+.+....
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 4567877777777776632 344678999999999999999987643
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=96.79 E-value=0.0058 Score=61.25 Aligned_cols=28 Identities=36% Similarity=0.597 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3567999999999999999999987654
No 330
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.78 E-value=0.004 Score=62.75 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.....++|+|++|+|||||++.+.....
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4567999999999999999999976654
No 331
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.77 E-value=0.0067 Score=62.56 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999977654
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.76 E-value=0.0041 Score=62.41 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4578999999999999999999877654
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.76 E-value=0.0037 Score=54.78 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 130 ACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 130 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
....+++.+.. ++..+|+|.|++|+|||||...+.......++--.++-+.-+++++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 44555555543 4578999999999999999999998888654433344444444443
No 334
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.76 E-value=0.0044 Score=60.33 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=49.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccE-EEEEEecCCCChhHHHHHHHHHhCC-----CCCCCCHH-----H
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDK-VGIATVSQDPSIINVQSELVKSLGW-----ALTEKDEE-----D 209 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~-----~ 209 (375)
...+..+|+|++|+|||||++.+.+.....+ -++ ++.+-+...+... .++.+.+.. ..+..... .
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~-~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAITTNN-PECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHH
Confidence 4577899999999999999999998775422 222 2344455443222 222222211 11111111 1
Q ss_pred HHHHHHHHhhhc--CCCcEEEEEeCCCC
Q 038205 210 RADRLRLMFSES--KSRKILVILDDVWK 235 (375)
Q Consensus 210 ~~~~l~~~~~~l--~~kr~LlVlDdv~~ 235 (375)
....+.+ ++ .++.+||++|++..
T Consensus 490 ~ai~~Ae---~fre~G~dVlillDSlTR 514 (672)
T PRK12678 490 LAIERAK---RLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHH---HHHHcCCCEEEEEeCchH
Confidence 1122233 33 67999999999853
No 335
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.21 Score=47.14 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGW 200 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 200 (375)
.+.+|-.+|.-|+||||.+..+++.++.+ .+..-+..+--..+...+-++.+..+++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHcCC
Confidence 36789999999999999999998888762 22222222222233444555555555543
No 336
>PRK06762 hypothetical protein; Provisional
Probab=96.75 E-value=0.0013 Score=54.58 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
+.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 337
>PRK09354 recA recombinase A; Provisional
Probab=96.75 E-value=0.0078 Score=55.64 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCC------CCCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWAL------TEKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 215 (375)
..+++-|+|++|+|||||+.++....... -..++|+.....++. ..+++++.+. ...+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46799999999999999999987665533 345678877666554 3455555321 1223344444444
Q ss_pred HHhhhc-CCCcEEEEEeCCCC
Q 038205 216 LMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l-~~kr~LlVlDdv~~ 235 (375)
. .+ .+..-++|+|.+..
T Consensus 132 ~---li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 T---LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred H---HhhcCCCCEEEEeChhh
Confidence 4 23 24566999998753
No 338
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0056 Score=56.83 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHHHHHHhcC--CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCC--CH
Q 038205 132 NQIIEALKKD--STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEK--DE 207 (375)
Q Consensus 132 ~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~ 207 (375)
.++-+.|..+ ...+|.|-|.+|+|||||.-++..+...+. .+.+|+...... -.+--+++++.+.... -.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHH---HHHHHHHHhCCCccceEEeh
Confidence 3344444332 357999999999999999999999888653 566665544322 2233345565433211 01
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l-~~kr~LlVlDdv~~ 235 (375)
+...+.+.. .+ ..++-|+|+|.++.
T Consensus 154 Et~~e~I~~---~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDIIA---ELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHHH---HHHhcCCCEEEEeccce
Confidence 111122222 33 35888999998754
No 339
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.75 E-value=0.011 Score=54.94 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh---c-CCccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ---N-NIFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++-|+|++|+|||+|+..++-.... . ..-..++|+.....+.+..+ .+++++++.... ..+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 3678899999999999999887754321 1 11236889998888777655 456666654321 1122
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l-~~kr~LlVlDdv~~ 235 (375)
+.....+......+ ..+--|||+|.+..
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 33333333322223 23556999998753
No 340
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.75 E-value=0.0028 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+|+|.|++|+||||||+.+......
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 341
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.002 Score=54.09 Aligned_cols=130 Identities=21% Similarity=0.227 Sum_probs=67.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-------ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-------SIINVQSELVKSLGWALTEKDEEDRADRLRL 216 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 216 (375)
+.|.+.|.+|+||||+|+.+....+.... .++ +++.+. ....+.++-..... .+.....+-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~--~vi--~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldS 70 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW--RVI--HLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDS 70 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh--hcc--ccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHH
Confidence 46788999999999999999988875311 111 011100 00111111111110 0111112222
Q ss_pred HhhhcCCCcEEEEEeCCCCcccccc-cCCCCCCCCCCcEEEEEeCChhHHhhhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 217 MFSESKSRKILVILDDVWKELDLET-IGIPVGDRDNCCKILLTTRLQQVCYRMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 217 ~~~~l~~kr~LlVlDdv~~~~~~~~-l~~~l~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
+++ .+++|.||......+.. +...-......-.||-+-...+.|...+. -+-+|.+++-..+|..+.-
T Consensus 71 ---alk--n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~---ergepip~Evl~qly~RfE 139 (261)
T COG4088 71 ---ALK--NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR---ERGEPIPEEVLRQLYDRFE 139 (261)
T ss_pred ---Hhc--ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc---cCCCCCCHHHHHHHHHhhc
Confidence 443 89999999865432221 11111111223457777667777766553 3456777777777776654
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=96.73 E-value=0.0064 Score=60.95 Aligned_cols=28 Identities=36% Similarity=0.671 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~ 390 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLK 390 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999998765
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0032 Score=55.97 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=43.8
Q ss_pred HHHHHHHh--cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHH
Q 038205 132 NQIIEALK--KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQ 191 (375)
Q Consensus 132 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 191 (375)
.+|+..+. .++..+|+|.|+||+|||||...+...+..+++--.++-|.-|+.++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45555553 3567899999999999999999999998876665556666656666544444
No 344
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.72 E-value=0.0018 Score=56.28 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
+++.|.|++|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999854
No 345
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.72 E-value=0.0065 Score=60.91 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4578999999999999999999977654
No 346
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.71 E-value=0.012 Score=54.13 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLG 199 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 199 (375)
...++-|+|++|+|||+++.+++....... .-..++|+.....++...+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 467899999999999999999976643211 11368899887777766544 4455444
No 347
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0015 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.++|.|.|++|+||||+++.+....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 348
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.68 E-value=0.0061 Score=61.20 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999987654
No 349
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.68 E-value=0.0018 Score=56.64 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..|.|.|++|+||||+|+.+.....
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999988765
No 350
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.68 E-value=0.004 Score=49.28 Aligned_cols=41 Identities=34% Similarity=0.283 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 129 SACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 129 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
++..++-+.+.. ....+|.+.|+.|+||||+++.+......
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344445454433 34569999999999999999999988754
No 351
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.011 Score=58.63 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999987654
No 352
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.66 E-value=0.0028 Score=62.07 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=43.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT 180 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 180 (375)
|.......-...-++++..||.. ...+++.+.||+|+||||+++.+++... |+..-|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 34444455566778888888854 2357899999999999999999998875 56666754
No 353
>PRK08149 ATP synthase SpaL; Validated
Probab=96.65 E-value=0.014 Score=55.56 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=53.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-CChhHHHHHHHHHhCC-------CCCCCCH-----
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-PSIINVQSELVKSLGW-------ALTEKDE----- 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~----- 207 (375)
.....++|+|++|+|||||+..+++.... +.++...+... .+...+..+....... ...+.+.
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 35679999999999999999999875542 23333444433 3455555555553221 1111111
Q ss_pred -HHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 -EDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 -~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
......+.+++. -+++++||++||+..
T Consensus 225 a~~~a~tiAE~fr-~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFR-DQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEccchHH
Confidence 122334445443 258999999999854
No 354
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.069 Score=46.42 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=78.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-h
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-E 220 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~ 220 (375)
++.-+.++||+|.|||-||+.|++... +.|+.+|.. ++.+.. ++ +...++++++- +
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~-------c~firvsgs----elvqk~---ig---------egsrmvrelfvma 236 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS----ELVQKY---IG---------EGSRMVRELFVMA 236 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH----HHHHHH---hh---------hhHHHHHHHHHHH
Confidence 467789999999999999999998543 345555542 222211 11 11122222211 3
Q ss_pred cCCCcEEEEEeCCCCcc----------------cccccCCCCCC--CCCCcEEEEEeCChhHHhh-----hCCCCcccCC
Q 038205 221 SKSRKILVILDDVWKEL----------------DLETIGIPVGD--RDNCCKILLTTRLQQVCYR-----MGCDPRIKLD 277 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~IivTTr~~~v~~~-----~~~~~~~~l~ 277 (375)
-..-+-++..|++++.. ..-++...+.. ..++.+||+.|..-++... -..+..++..
T Consensus 237 rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp 316 (404)
T KOG0728|consen 237 REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCC
Confidence 33467788888876421 01111122221 2355788887765444322 2233678888
Q ss_pred CCChHHHHHHHHHHcC--CCCCCCCchHHHHHHHH
Q 038205 278 ALDQAEGLDLLRKHAG--IDVADKTMTDVSKRVAD 310 (375)
Q Consensus 278 ~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~ 310 (375)
+-+.+.-.++++-+.- +-..-..+..+++++.-
T Consensus 317 ~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 317 PPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred CCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 8787777777765542 11112344555554433
No 355
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.64 E-value=0.0034 Score=60.25 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=40.9
Q ss_pred CCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCcc
Q 038205 122 SSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFD 174 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 174 (375)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 35789999999999888655 4788999999999999999998765433443
No 356
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.64 E-value=0.019 Score=53.02 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=40.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLG 199 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 199 (375)
...++-|+|++|+|||+++.+++....... .-..++|++....++...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 467899999999999999999976543211 11468899887777665544 4445554
No 357
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.64 E-value=0.0046 Score=55.46 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999998775
No 358
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.64 E-value=0.01 Score=60.47 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.....++|+|++|+|||||++.+.....
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~ 503 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWP 503 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999988754
No 359
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.64 E-value=0.0073 Score=57.88 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+..+|+|++|+||||+.+.++...-
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~e~ 126 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGREV 126 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcCCC
Confidence 467899999999999999999988754
No 360
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.63 E-value=0.019 Score=54.86 Aligned_cols=89 Identities=16% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H----
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E---- 208 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~---- 208 (375)
..+.++|+|++|+|||||++.+++.... +.++++-+.... ...++..+.+..-+. ...+.+. .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 5679999999999999999999876653 344445555443 444555444433221 1111211 1
Q ss_pred -HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 -DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 -~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 233 ~~~a~tiAEyfrd-~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRD-QGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHH-CCCcEEEEEeCcHH
Confidence 122334453332 58999999999854
No 361
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.62 E-value=0.014 Score=48.30 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|.|++|.|||||...|+.-..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 467999999999999999999876543
No 362
>PRK03839 putative kinase; Provisional
Probab=96.62 E-value=0.0017 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.735 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 363
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0018 Score=55.39 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+|+|.|.+|+||||+|+.+......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 3468999999999999999999998874
No 364
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.62 E-value=0.032 Score=49.17 Aligned_cols=48 Identities=17% Similarity=0.080 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 193 (375)
...++.|.|++|+|||+++.++....-.+ -..++|++... +...+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 46799999999999999999876554322 34566776544 44455544
No 365
>PF13245 AAA_19: Part of AAA domain
Probab=96.62 E-value=0.0066 Score=43.05 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCchHHH-HHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTT-LAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTt-La~~v~~~~ 167 (375)
+.+++.|.|++|+|||+ ++..+....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688889999999995 555554444
No 366
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.61 E-value=0.0014 Score=56.09 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 367
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.61 E-value=0.015 Score=59.92 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....++|+|++|+|||||++.+......
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 45789999999999999999999876653
No 368
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.60 E-value=0.0096 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567999999999999999999977654
No 369
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0027 Score=54.79 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-.+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4567999999999999999999976554
No 370
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.60 E-value=0.0019 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++.|+|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 371
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.59 E-value=0.009 Score=61.60 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4568999999999999999999976654
No 372
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.59 E-value=0.018 Score=52.91 Aligned_cols=90 Identities=18% Similarity=0.298 Sum_probs=52.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec-CCCChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS-QDPSIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
...+.++|+|++|+|||||++.+.+.... +..+...+. ...+...+.......-+. ...+.+. .
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45678999999999999999999876653 223333333 334555555555443221 1111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 143 ~~~~a~~~AEyfr~-~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRD-QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence 122334443332 58999999999754
No 373
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.58 E-value=0.0089 Score=57.05 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhC-----CC-CCCCCH------H
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLG-----WA-LTEKDE------E 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~-~~~~~~------~ 208 (375)
.....++|+|++|+|||||++.+...... ...+++.......++..+....+.... .- ..+.+. .
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34679999999999999999988775542 223444433344455544443333221 10 111111 1
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 ~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 240 ~~a~~iAEyfrd-~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRD-RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHH-cCCCEEEeccchHH
Confidence 122334443332 58999999999853
No 374
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.014 Score=49.98 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEEEEecCCCChhH-----HHHHHHHHhCCCCCCCCH
Q 038205 134 IIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGIATVSQDPSIIN-----VQSELVKSLGWALTEKDE 207 (375)
Q Consensus 134 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~-----~~~~i~~~l~~~~~~~~~ 207 (375)
++..+-+...--..|.|++|+|||||.+.+++..... ..|...-.+-+.....+.. -...+..+..........
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH
Confidence 4444444444447899999999999999998877643 2343321111211111100 011111111111111111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhhh
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYRM 268 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~ 268 (375)
+-+...++. ..+=++|.|++-..++-..+...+ ..|.+++.|.+-..+...+
T Consensus 208 ~gmmmaIrs------m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~iedl~ 259 (308)
T COG3854 208 EGMMMAIRS------MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIEDLI 259 (308)
T ss_pred HHHHHHHHh------cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHHhh
Confidence 222222222 357799999998776655554443 4678999998865554443
No 375
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.57 E-value=0.0049 Score=61.76 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=59.8
Q ss_pred cccccC-CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHH
Q 038205 112 DKEMPI-PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINV 190 (375)
Q Consensus 112 ~~~~~~-~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 190 (375)
.+.+.+ |..+..+.|.++.++.|...+... +.+.++|++|+||||+++.+...... ..++..+|..- ...+...+
T Consensus 20 ~~~~~~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~ 95 (637)
T PRK13765 20 TSDIEVPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPK 95 (637)
T ss_pred ceecccCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHH
Confidence 344444 444567889999988888777655 47999999999999999999887642 34566777654 33466666
Q ss_pred HHHHHHHhC
Q 038205 191 QSELVKSLG 199 (375)
Q Consensus 191 ~~~i~~~l~ 199 (375)
++.++..++
T Consensus 96 ~~~v~~~~G 104 (637)
T PRK13765 96 IRTVPAGKG 104 (637)
T ss_pred HHHHHHhcC
Confidence 776666554
No 376
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.57 E-value=0.019 Score=54.86 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=59.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-CChhHHHHHHHHHhCCC-------CCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-PSIINVQSELVKSLGWA-------LTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~-~--- 208 (375)
...+.++|.|.+|+|||||+.++........ -..++++-+... ....+++.++...-... ..+.+. .
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3578999999999999999999887765322 235666666544 35566666665431111 111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++..-+++.+||++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 123445564444467999999999854
No 377
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.56 E-value=0.0088 Score=57.45 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHh-----cC--CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 127 TESACNQIIEALK-----KD--STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 127 r~~~~~~l~~~l~-----~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+.++..||. .+ +.+++.|.||+|+||||.++.+.....
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3455677777776 33 356999999999999999999988765
No 378
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.56 E-value=0.016 Score=55.50 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=59.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
...+.++|.|.+|+|||+|+.++....... +-+.++++-+.... ...++++++...-.. ...+.+. .
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 357899999999999999999988775532 23567777776554 445555555543111 0111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++..-+++.+||++||+..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 223345554444467999999999854
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.55 E-value=0.015 Score=52.29 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV 181 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 181 (375)
+.+++.++|++|+||||++..++......+ ..+.++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeC
Confidence 467999999999999999999988776432 24445543
No 380
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.55 E-value=0.0035 Score=51.04 Aligned_cols=35 Identities=37% Similarity=0.408 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEE
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIA 179 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 179 (375)
+.+|-|.|.+|+||||||+.+...+...+ ..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEe
Confidence 45899999999999999999999998653 334444
No 381
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.54 E-value=0.0095 Score=57.24 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=57.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCcc--EEEEEEecCC-CChhHHHHHHHHHhCCC-------CCCCCH---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFD--KVGIATVSQD-PSIINVQSELVKSLGWA-------LTEKDE--- 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~--- 207 (375)
...+.++|.|..|+|||||+.++.+.....+.+. .++++-+.+. ....+++..+...=... ..+.+.
T Consensus 139 g~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 139 VRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred ccCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 3568999999999999999999988765431111 3455555544 45556666665432111 111111
Q ss_pred ---HHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 ---EDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 ---~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
......+.+++..-+++++||++||+..
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1223345565443467999999999854
No 382
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.54 E-value=0.028 Score=49.17 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ 183 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 183 (375)
....+.|.|++|+|||||+.++....... -..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 46799999999999999999876544322 23567776543
No 383
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.54 E-value=0.14 Score=47.09 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=34.1
Q ss_pred cccCCCCChHHHHHHHHHHcCCCCCC--CCchHHHHHHHHHcCCchhHH
Q 038205 273 RIKLDALDQAEGLDLLRKHAGIDVAD--KTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 273 ~~~l~~L~~~e~~~Lf~~~~~~~~~~--~~~~~~~~~i~~~~~glPlai 319 (375)
++++++++.+|+..++..+....... ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999876422211 333556677777779999654
No 384
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.54 E-value=0.0029 Score=62.52 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=41.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
|..+..++|.+..+..+...+.......+.|+|++|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44556788999999999887766666788999999999999999998754
No 385
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.54 E-value=0.0053 Score=59.56 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEEEEecCCCChhHHHH---------------------------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGIATVSQDPSIINVQS--------------------------- 192 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~--------------------------- 192 (375)
....+++|+|.+|+||||++..+..-.... ......+-.....-.....--.
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~ 112 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD 112 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHH
Q ss_pred ----------------------HHHHHhCCCCCCCC---------HHHHHHHHHHHhhhcCCCcEEEEEe------CCCC
Q 038205 193 ----------------------ELVKSLGWALTEKD---------EEDRADRLRLMFSESKSRKILVILD------DVWK 235 (375)
Q Consensus 193 ----------------------~i~~~l~~~~~~~~---------~~~~~~~l~~~~~~l~~kr~LlVlD------dv~~ 235 (375)
++++.++.+..... .....-.+.- ++..++-|||+| |+..
T Consensus 113 Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAm---ALa~~P~LLIaDEPTTaLDvt~ 189 (539)
T COG1123 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAM---ALALKPKLLIADEPTTALDVTT 189 (539)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHH---HHhCCCCEEEECCCccccCHHH
Q ss_pred cccccccCCCCCCCCCCcEEEEEeCChhHHhhhC
Q 038205 236 ELDLETIGIPVGDRDNCCKILLTTRLQQVCYRMG 269 (375)
Q Consensus 236 ~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~ 269 (375)
..+.-++...+. ...|..+|++|++..+...+.
T Consensus 190 q~qIL~llk~l~-~e~g~a~l~ITHDl~Vva~~a 222 (539)
T COG1123 190 QAQILDLLKDLQ-RELGMAVLFITHDLGVVAELA 222 (539)
T ss_pred HHHHHHHHHHHH-HHcCcEEEEEcCCHHHHHHhc
No 386
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.54 E-value=0.0017 Score=49.51 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHhhhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
|-|+|++|+|||++|+.+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998877663
No 387
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.53 E-value=0.016 Score=51.60 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCchHHHHH-HHHHhhhhhcCCccEE-EEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H--
Q 038205 142 STKMVGLHGLGGVGKTTLA-KFVGNQLRQNNIFDKV-GIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E-- 208 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~-- 208 (375)
..+.++|.|.+|+|||+|+ ..+.+... -+.+ +++-+.+.. ...++.+.+...-.. ...+.+. .
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 5689999999999999995 55655432 2333 555555543 455555555532111 1111111 1
Q ss_pred ---HHHHHHHHHhhhcCCCcEEEEEeCCCCc-cccccc
Q 038205 209 ---DRADRLRLMFSESKSRKILVILDDVWKE-LDLETI 242 (375)
Q Consensus 209 ---~~~~~l~~~~~~l~~kr~LlVlDdv~~~-~~~~~l 242 (375)
...-.+.+++.. +++.+||++||+... ..++++
T Consensus 144 ~a~~~a~aiAE~fr~-~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMD-NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEcChHHHHHHHHHH
Confidence 122344554434 589999999999654 344444
No 388
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.53 E-value=0.0099 Score=56.66 Aligned_cols=45 Identities=27% Similarity=0.219 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHHhc-------C---------CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALKK-------D---------STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~-------~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.+..++.+...+.+ . ....+.++|++|+|||++|+.+.....
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 57888877777544311 0 135689999999999999999987654
No 389
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.53 E-value=0.019 Score=54.79 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=55.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCHH----
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDEE---- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 208 (375)
...+.++|.|++|+|||||++.+++.... +.++++-+.... ...++....+..-+. ...+.+..
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~----dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAEV----DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCCC----CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 35679999999999999999999987653 456666665543 444444443322111 11112221
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++++||++|++..
T Consensus 236 a~~~a~tiAEyfrd-~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRD-QGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEeccchhH
Confidence 122345554433 58999999999854
No 390
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.52 E-value=0.0026 Score=51.08 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ 183 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 183 (375)
++|.|+|+.|+|||||++.+.+....++ +...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g-~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG-YRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC-CceEEEEEccC
Confidence 4799999999999999999999987643 44444555444
No 391
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.017 Score=53.38 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV 181 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 181 (375)
..-+.++|++|+|||.||..+++..-..+ ..+++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 36799999999999999999999886442 24555543
No 392
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.52 E-value=0.0021 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
++|+|+|++|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999854
No 393
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.52 E-value=0.0042 Score=61.95 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999976554
No 394
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.52 E-value=0.019 Score=55.02 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
...+.++|.|.+|+|||||+.++........ -..++++-+.... ...++++++...-.. ...+.+. .
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999999877765432 2356666665543 555666666543211 1111212 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++..-+++.+||++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 223345554434478999999999853
No 395
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.51 E-value=0.0024 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|+|+|++|+|||||++.+.....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457999999999999999999998753
No 396
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.51 E-value=0.0057 Score=54.97 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 133 QIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 133 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++...+..++.|.|++|+|||||+..+.+....
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3444455567889999999999999999999998764
No 397
>PRK05922 type III secretion system ATPase; Validated
Probab=96.51 E-value=0.022 Score=54.36 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCCC-------CCCCCH-----
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGWA-------LTEKDE----- 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~----- 207 (375)
.....++|+|++|+|||||++.+.+.... +....+.+.. .......+.+........ ..+.+.
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~~----d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSKS----TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCC----CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45678999999999999999999876542 2223332332 334445555544333221 111111
Q ss_pred -HHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 -EDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 -~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
......+.+++. -+++++||++||+..
T Consensus 231 a~~~a~tiAEyfr-d~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFR-DQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEeccchhH
Confidence 122233445433 257999999999854
No 398
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.50 E-value=0.0029 Score=52.48 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
...+++|+|++|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45689999999999999999999888753
No 399
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0045 Score=55.67 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 132 NQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 132 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+++.+... .+-+.++|++|+|||++++........
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 3444444443 457799999999999999998876543
No 400
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0038 Score=61.85 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...++++|||+|.||||+|..+-+-+.
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567999999999999999998866544
No 401
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.50 E-value=0.0099 Score=51.31 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+.+|+|++|+|||||.+.+....+.
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P 60 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRP 60 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCC
Confidence 35679999999999999999999776653
No 402
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0039 Score=58.17 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...|+|+||+|+|||||.+.+...+..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P 639 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDP 639 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCC
Confidence 468999999999999999999877654
No 403
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.49 E-value=0.0025 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVG 164 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~ 164 (375)
....++|.|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999976
No 404
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.49 E-value=0.0027 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...|.++|++|+||||+|+.+.....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.49 E-value=0.016 Score=49.61 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+.+|.|+|++|+||||||+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987753
No 406
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.49 E-value=0.013 Score=49.78 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCc--------cEEEEEEecCC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF--------DKVGIATVSQD 184 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 184 (375)
..++.|.|++|+||||++..+.........| ..+.|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 4689999999999999999988877643333 24566655544
No 407
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.48 E-value=0.0079 Score=60.67 Aligned_cols=29 Identities=34% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....++|+|++|+|||||++.+......
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45789999999999999999999776653
No 408
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0066 Score=58.83 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+.++|+|++|+|||||+..+..-..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 467999999999999999999976655
No 409
>PRK04040 adenylate kinase; Provisional
Probab=96.47 E-value=0.0025 Score=54.03 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998874
No 410
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.46 E-value=0.023 Score=54.27 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-----------CCccEEEEEEecCCCChhHHHHHHHHHhC-CC-------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-----------NIFDKVGIATVSQDPSIINVQSELVKSLG-WA------- 201 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~------- 201 (375)
...+.++|.|.+|+|||||+.++.+..... +.-..++++.+.+.....+.+.+.+..-+ ..
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 357899999999999999999988776510 11114566677776666666666555544 11
Q ss_pred CCCCCH-H-----HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 202 LTEKDE-E-----DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 202 ~~~~~~-~-----~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
..+.+. . .....+.+++..-+++.+||++||+..
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 1 223345565544567999999999853
No 411
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.46 E-value=0.0024 Score=50.94 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+|||||.+.+......
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 4579999999999999999999877653
No 412
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.45 E-value=0.015 Score=48.89 Aligned_cols=120 Identities=17% Similarity=0.064 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEE--EEEecCCCChhHHHHHHH--HH--hCCC--CCCCCHHH----
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVG--IATVSQDPSIINVQSELV--KS--LGWA--LTEKDEED---- 209 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~--~~--l~~~--~~~~~~~~---- 209 (375)
....|.|+|.+|-||||.|-.+.-+....+ +...+ |+.-.........++.+- .. .+.. +......+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG-KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 346899999999999999988877665432 22211 222121223333333320 00 0111 11111111
Q ss_pred HHHHHHHHhhhcCC-CcEEEEEeCCCCc-----ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 210 RADRLRLMFSESKS-RKILVILDDVWKE-----LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 210 ~~~~l~~~~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
....+....+.+.. +--|||||++-.. -..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222222335544 4459999998532 22333434444455667999999974
No 413
>PLN03211 ABC transporter G-25; Provisional
Probab=96.45 E-value=0.047 Score=55.58 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||.+.+....+
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999988754
No 414
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.44 E-value=0.0051 Score=51.89 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT 180 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 180 (375)
.+++.|+||+|+|||||++.+..... ..|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeec
Confidence 47899999999999999999999876 4475555444
No 415
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.44 E-value=0.017 Score=54.90 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCC-------CCCCCH-H----
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA-------LTEKDE-E---- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-~---- 208 (375)
.....++|+|++|+|||||++.+....+. ...++.....+.....++....+..-+.. ..+.+. .
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34679999999999999999988876542 22233333333334445555443332111 111111 1
Q ss_pred -HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 -DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 -~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 215 ~~~a~~iAEyfrd-~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRD-QGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHH-cCCCEEEeccchhH
Confidence 122334454332 57999999999854
No 416
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.42 E-value=0.018 Score=54.72 Aligned_cols=90 Identities=17% Similarity=0.316 Sum_probs=51.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~--- 208 (375)
.....++|+|++|+|||||++.+.+.... +..+...+.... ....+...+...-.. ...+.+. .
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~----~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYTEA----DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCCCC----CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 35678999999999999999988876542 233344444433 344444444332111 1111211 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 211 a~~~a~tiAEyfr~-~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRD-QGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEeChHH
Confidence 122334454433 58999999999854
No 417
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0026 Score=51.32 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCC
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA 201 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 201 (375)
+|.|.|++|+||||+|+.+.+...-. + + +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999987632 1 1 2236788888887754
No 418
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.40 E-value=0.02 Score=55.24 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCCC--------------CCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGWA--------------LTEK 205 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~ 205 (375)
...+.++|.|.+|+|||||+.++....... +-+.++++-+.+.. ...+++..+...-... ..+.
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 357899999999999999999888774321 12567777776554 4556666665511000 0111
Q ss_pred CH-H-----HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 206 DE-E-----DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 206 ~~-~-----~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
+. . .....+.+++..-.++.+||++||+..
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 11 1 223345553333334599999999854
No 419
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.40 E-value=0.0027 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++.|+||+|+|||||++.+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999977654
No 420
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.39 E-value=0.011 Score=56.32 Aligned_cols=90 Identities=17% Similarity=0.322 Sum_probs=50.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHHHhCCC-------CCCCCH-----
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVKSLGWA-------LTEKDE----- 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~----- 207 (375)
...+.++|+|++|+|||||++.+.+.... +..+...+.. ..+...+....+..-+.. ..+.+.
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~~----dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQA----DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccCC----CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 45789999999999999999998875542 2222222322 223333333333322211 111111
Q ss_pred -HHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 -EDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 -~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.+....+.+++. -+++.+||++||+..
T Consensus 229 a~e~a~~iAEyfr-~~g~~Vll~~Dsltr 256 (434)
T PRK07196 229 ATELCHAIATYYR-DKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHhh-hccCCEEEeecchhH
Confidence 122334444333 357999999999864
No 421
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.39 E-value=0.0032 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36899999999999999999987754
No 422
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.38 E-value=0.0061 Score=56.46 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 121 FSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+|.++.+..|+-.+-++...-+.|.|++|+|||||++.+..-..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence 456789999998887777676667788999999999999999987653
No 423
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.018 Score=49.93 Aligned_cols=73 Identities=30% Similarity=0.366 Sum_probs=45.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSE 220 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 220 (375)
+.++-+.++||+|+|||-||+.|+++... .|-.++ .+ ++.+ +.+| ..+....+.++- +
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a--~firvv-----gs----efvq---kylg-----egprmvrdvfrl---a 244 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTA--AFIRVV-----GS----EFVQ---KYLG-----EGPRMVRDVFRL---A 244 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccch--heeeec-----cH----HHHH---HHhc-----cCcHHHHHHHHH---H
Confidence 46788999999999999999999997763 243221 10 1111 1222 122333333333 4
Q ss_pred cCCCcEEEEEeCCCC
Q 038205 221 SKSRKILVILDDVWK 235 (375)
Q Consensus 221 l~~kr~LlVlDdv~~ 235 (375)
-.+-+-++.+|+++.
T Consensus 245 kenapsiifideida 259 (408)
T KOG0727|consen 245 KENAPSIIFIDEIDA 259 (408)
T ss_pred hccCCcEEEeehhhh
Confidence 456788999998764
No 424
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.38 E-value=0.012 Score=55.58 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHHhcC--------------CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 124 FETTESACNQIIEALKKD--------------STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
++|.++.++.+.-.+... .++.|.++|++|+|||++|+.+......
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567777777776554321 2468899999999999999999988763
No 425
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.36 E-value=0.022 Score=50.10 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
...++.|+|++|+|||+|+.++....-.. =..++|++... +...+.+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~--~~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTEN--TSKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCC--CHHHHHHHH
Confidence 46799999999999999999986543222 24567777654 344555443
No 426
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.36 E-value=0.033 Score=53.34 Aligned_cols=90 Identities=16% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCCC-------CCCCCH-H---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGWA-------LTEKDE-E--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~-~--- 208 (375)
...+.++|+|++|+|||||++.+.+... .+.++...+.... +...+...+...-+.. ..+.+. .
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 3467899999999999999999887543 2333334444333 4444444444332211 111111 1
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++.. +++.+||++||+..
T Consensus 242 a~~~a~aiAEyfrd-~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRD-KGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEecchhH
Confidence 122345554432 58999999999854
No 427
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.0037 Score=52.33 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+|.|.|++|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999998764
No 428
>PRK06217 hypothetical protein; Validated
Probab=96.35 E-value=0.0028 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|.|++|+||||+++.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 429
>PRK14527 adenylate kinase; Provisional
Probab=96.35 E-value=0.0033 Score=53.51 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+.+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467999999999999999999987765
No 430
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.35 E-value=0.015 Score=58.47 Aligned_cols=84 Identities=25% Similarity=0.306 Sum_probs=54.2
Q ss_pred cccccCCCC-CCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHH
Q 038205 112 DKEMPIPRF-FSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINV 190 (375)
Q Consensus 112 ~~~~~~~~~-~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 190 (375)
.+.+++|.. ...++|+++.+..+...+... +.+.++|++|+||||+++.+.+..... .|...+++.- ...+...+
T Consensus 7 ~~~~~~~~~~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~ 82 (608)
T TIGR00764 7 TEEIPVPERLIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPR 82 (608)
T ss_pred ccccCcchhhHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHH
Confidence 445555544 345678888888777777654 366699999999999999999877643 3333333322 22344455
Q ss_pred HHHHHHHhC
Q 038205 191 QSELVKSLG 199 (375)
Q Consensus 191 ~~~i~~~l~ 199 (375)
++.+...++
T Consensus 83 ~~~v~~~~g 91 (608)
T TIGR00764 83 IVEVPAGEG 91 (608)
T ss_pred HHHHHHhhc
Confidence 666655554
No 431
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.34 E-value=0.0027 Score=53.58 Aligned_cols=23 Identities=48% Similarity=0.745 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 432
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.33 E-value=0.019 Score=54.77 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-CChhHHHHHHHHHhCC--------CCCCCCHH---
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-PSIINVQSELVKSLGW--------ALTEKDEE--- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~--------~~~~~~~~--- 208 (375)
.....++|+|++|+|||||++.+.+... .+..++..+... ..+...+.+....-.. ..+.....
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 4578999999999999999999987654 333445444443 3444555554321000 11111111
Q ss_pred --HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 209 --DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 209 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
.....+.+++. -+++++||++||+..
T Consensus 229 a~~~a~tiAEyfr-d~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFR-DNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHH-HCCCcEEEEEeCHHH
Confidence 12233445443 257999999999853
No 433
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.081 Score=48.58 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=35.4
Q ss_pred CCCccchHHHHHHHHHHHhc--------------CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 121 FSSFETTESACNQIIEALKK--------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....|-+..++.+.+...- ....-|.++||+|.|||-||+.+..+...
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC
Confidence 34455667766666655310 13567899999999999999999998763
No 434
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.32 E-value=0.037 Score=51.18 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHhhhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.+.|++|+||||+++.+.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999988763
No 435
>PRK00625 shikimate kinase; Provisional
Probab=96.32 E-value=0.0032 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988765
No 436
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.32 E-value=0.01 Score=55.85 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKD--EEDRADRLRLMFS 219 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~l~~~~~ 219 (375)
...++.|.|++|+|||||+.+++...... -..++|++.... ... +..-+.+++...+... .....+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~~l~l~~e~~le~I~~--- 152 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQ-IKLRADRLGISTENLYLLAETNLEDILA--- 152 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHH-HHHHHHHcCCCcccEEEEccCcHHHHHH---
Confidence 35799999999999999999998776643 245667665432 222 2233445554322110 0011112222
Q ss_pred hc-CCCcEEEEEeCCCC
Q 038205 220 ES-KSRKILVILDDVWK 235 (375)
Q Consensus 220 ~l-~~kr~LlVlDdv~~ 235 (375)
.+ ..+.-+||+|.+..
T Consensus 153 ~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 153 SIEELKPDLVIIDSIQT 169 (372)
T ss_pred HHHhcCCcEEEEcchHH
Confidence 22 23667899999753
No 437
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.32 E-value=0.021 Score=62.80 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.++-|.++||+|+|||.||++++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 4678899999999999999999998764
No 438
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.32 E-value=0.033 Score=50.97 Aligned_cols=85 Identities=22% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
..+++-|+|+.|+||||||-.+....... -..++|+.....++. ..+..++.+.+ +.+.++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 46799999999999999999988776533 356789887766554 34445554322 233444444444
Q ss_pred HHhhhcCC-CcEEEEEeCCCCc
Q 038205 216 LMFSESKS-RKILVILDDVWKE 236 (375)
Q Consensus 216 ~~~~~l~~-kr~LlVlDdv~~~ 236 (375)
. .++. .--++|+|.|...
T Consensus 125 ~---lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 Q---LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp H---HHHTTSESEEEEE-CTT-
T ss_pred H---HhhcccccEEEEecCccc
Confidence 4 3333 3458999988653
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.31 E-value=0.0031 Score=53.04 Aligned_cols=25 Identities=56% Similarity=0.785 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 440
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.045 Score=49.08 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=56.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH-hCCC--CCCCCHHHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS-LGWA--LTEKDEEDRADRLRLMF 218 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~--~~~~~~~~~~~~l~~~~ 218 (375)
..+++=|+|+.|+||||+|-+++-..... -..++|+...+.+++..+. ++... +..- ....+.++....+....
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 46789999999999999999987665532 3378899888877766544 33333 2211 11223333333333322
Q ss_pred hhcCCCcEEEEEeCCCC
Q 038205 219 SESKSRKILVILDDVWK 235 (375)
Q Consensus 219 ~~l~~kr~LlVlDdv~~ 235 (375)
.....+--|+|+|.+..
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 23433566999998854
No 441
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.29 E-value=0.073 Score=52.58 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=37.7
Q ss_pred CCCccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 121 FSSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...++|+...+.++.+.+.. ....-|.|+|+.|+|||++|+.+.+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 35577888888777777643 3456789999999999999999988654
No 442
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.034 Score=51.32 Aligned_cols=27 Identities=41% Similarity=0.337 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
-+-|.++||+|.|||-||+.|+.....
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 356889999999999999999998774
No 443
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.29 E-value=0.003 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 444
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.28 E-value=0.0032 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 445
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.27 E-value=0.0031 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|+|+|++|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998654
No 446
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.26 E-value=0.051 Score=50.16 Aligned_cols=40 Identities=28% Similarity=0.565 Sum_probs=31.0
Q ss_pred HHHHHHHHh--cCCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 131 CNQIIEALK--KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 131 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
...|++.+. .+...+|+|.|++|+|||||+..+....+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344555553 3457799999999999999999998887754
No 447
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.26 E-value=0.0089 Score=59.75 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999999976554
No 448
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.26 E-value=0.0052 Score=53.83 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN 171 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 171 (375)
.+.+|.++||+|+||||+.+.++...+.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 456889999999999999999999888653
No 449
>PRK14530 adenylate kinase; Provisional
Probab=96.26 E-value=0.0038 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.|.|+|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 450
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.26 E-value=0.0052 Score=56.96 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=42.4
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 120 FFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+...+|.++.+..|+..+.++...-+.|.|+.|+||||+|+.+++-...
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 35667899999999988887777777889999999999999999877653
No 451
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.25 E-value=0.05 Score=52.63 Aligned_cols=93 Identities=22% Similarity=0.180 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCchHHHHH-HHHHhhhhhc-----CCccEEEEEEecCCCChhHHHHHHHHHhC-CC-------CCCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLA-KFVGNQLRQN-----NIFDKVGIATVSQDPSIINVQSELVKSLG-WA-------LTEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~~ 207 (375)
..+.++|.|..|+|||+|| ..+.+..... ..-..++++-+.+..+...-+.+.+..-+ .. ....+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 5678999999999999996 6666665321 23346778888776644433444444433 11 011111
Q ss_pred -H-----HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 -E-----DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 -~-----~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
. .....+.+++. -+++.+|+|+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFr-d~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFM-NRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCEEEEEcCchH
Confidence 1 12334455443 257999999999864
No 452
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.25 E-value=0.0082 Score=56.17 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=62.6
Q ss_pred HHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCcc-EEEEEEecCCCChhHHHH--HHHHHhCCCCCCCCHHHH
Q 038205 134 IIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFD-KVGIATVSQDPSIINVQS--ELVKSLGWALTEKDEEDR 210 (375)
Q Consensus 134 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~ 210 (375)
+.+.+.. ....|.|+|+.|+||||+++.+.+.......-. .++.+.-+-.+....... ..+.+-.. .......
T Consensus 126 ~~~~~~~-~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v---~~~~~~~ 201 (358)
T TIGR02524 126 IIDAIAP-QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI---PRHLNNF 201 (358)
T ss_pred HHHHHhc-cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec---cccccCH
Confidence 4444443 457999999999999999999987764221111 222221111111111100 00001000 0011234
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhH
Q 038205 211 ADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQV 264 (375)
Q Consensus 211 ~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v 264 (375)
...++. .++..+-.+++.++.+.+....... ....|..++-|-+..+.
T Consensus 202 ~~~l~~---aLR~~Pd~i~vGEiRd~et~~~al~---aa~tGh~v~tTlHa~~~ 249 (358)
T TIGR02524 202 AAGVRN---ALRRKPHAILVGEARDAETISAALE---AALTGHPVYTTLHSSGV 249 (358)
T ss_pred HHHHHH---HhccCCCEEeeeeeCCHHHHHHHHH---HHHcCCcEEEeeccCCH
Confidence 455555 7778889999999887766543211 22345556666665444
No 453
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.23 E-value=0.0044 Score=51.91 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..++.|+|++|+||||+++.+......
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 358999999999999999999987653
No 454
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.23 E-value=0.0041 Score=52.84 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999987654
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.23 E-value=0.017 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+..|+|++|+|||+|+..++-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999977654
No 456
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.23 E-value=0.016 Score=55.38 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCC-------CCCCCH------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA-------LTEKDE------ 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~------ 207 (375)
.....++|.|++|+|||||++.+....... ..+++....+......+.+.+...-+.. ..+.+.
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998765432 2333333333444555555554332111 111111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
......+.+++. -+++.+||++||+..
T Consensus 238 ~~~a~tiAEyfr-d~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFR-DRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHH-HcCCCEEEeccchhH
Confidence 112233444333 257999999999854
No 457
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.23 E-value=0.031 Score=53.90 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc---CCccEEEEEEecCC-CChhHHHHHHHHHhCCC-------CCCCCH--
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN---NIFDKVGIATVSQD-PSIINVQSELVKSLGWA-------LTEKDE-- 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~-- 207 (375)
...+.++|.|..|+|||||+.++.+..... ..+ .++++-+.+. ....+++..+...=... ..+.+.
T Consensus 141 g~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~ 219 (460)
T PRK04196 141 VRGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIE 219 (460)
T ss_pred cCCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHH
Confidence 357899999999999999999998876532 122 4555556544 45566666665542111 111111
Q ss_pred ----HHHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 ----EDRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 ----~~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
......+.+++..-+++++||++||+..
T Consensus 220 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 220 RILTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 1223445564433466999999999854
No 458
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.23 E-value=0.0076 Score=55.38 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSL-GWALTEKDEEDRADRLRLMFSE 220 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~l~~~~~~ 220 (375)
....+.|+|+.|+|||||++.+........ .++.+.-.....+.. .....-. .........-...+.+.. .
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~---~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQS---C 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHH---H
Confidence 457999999999999999999887764321 122221111111110 0000000 000001111233445555 7
Q ss_pred cCCCcEEEEEeCCCCcccccccCCCCCCCCCCcE-EEEEeCChhHH
Q 038205 221 SKSRKILVILDDVWKELDLETIGIPVGDRDNCCK-ILLTTRLQQVC 265 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~-IivTTr~~~v~ 265 (375)
++..+-.+++|++.+.+.+..+ .... .|.. ++.|++..+..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l-~a~~---~g~~~~i~T~Ha~~~~ 256 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFI-RAVN---TGHPGSITTLHAGSPE 256 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHH-HHHh---cCCCeEEEEEeCCCHH
Confidence 7778889999999886655433 2222 2333 57788876543
No 459
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.22 E-value=0.031 Score=53.30 Aligned_cols=122 Identities=14% Similarity=0.219 Sum_probs=65.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCC-------CCCCCH------
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA-------LTEKDE------ 207 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~------ 207 (375)
...+.++|+|++|+|||||++.++...+.. ..++.....+.....+.+.+.+..-+.. ..+.+.
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 456799999999999999999998876531 1233222223355556666555442211 111111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEeCCCCc-ccccccCCC---CCCCCCCcEEEEEeCChhHHhhh
Q 038205 208 EDRADRLRLMFSESKSRKILVILDDVWKE-LDLETIGIP---VGDRDNCCKILLTTRLQQVCYRM 268 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~~kr~LlVlDdv~~~-~~~~~l~~~---l~~~~~gs~IivTTr~~~v~~~~ 268 (375)
......+.+++. -++++.||++||+... ....++... .+. .|-...+.|....++...
T Consensus 231 ~~~a~~iAEyfr-~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 231 AKLATSIAEYFR-DQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHH-HcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 112233444333 2579999999998654 222332211 221 244555555555555443
No 460
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.22 E-value=0.013 Score=58.39 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999987654
No 461
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.22 E-value=0.0031 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHhhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
|.|+|++|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 462
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.22 E-value=0.0073 Score=49.42 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 129 SACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 129 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.++.|.+++.. +++.++|++|+|||||+..+.....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 445666666654 7999999999999999999988653
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.21 E-value=0.0041 Score=54.03 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 3567999999999999999999987654
No 464
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.21 E-value=0.0069 Score=55.98 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
|-.+..++|.++.++.+.-.+...+..-+.+.|++|+||||+|+.+..-.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34456778999998887765544445678999999999999999997765
No 465
>PRK13949 shikimate kinase; Provisional
Probab=96.21 E-value=0.0043 Score=51.63 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..|.|+|++|+||||+++.+.....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998875
No 466
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0047 Score=51.19 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+.|.||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999877
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.0044 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.+.+|.|+||+|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 468
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.19 E-value=0.0081 Score=52.41 Aligned_cols=52 Identities=25% Similarity=0.217 Sum_probs=28.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh-----cCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ-----NNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
+..|.||+|.||||++..+...... ...-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 6899999999999877776666511 122333444444444444445544444
No 469
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.19 E-value=0.0043 Score=53.61 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999987654
No 470
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.19 E-value=0.0043 Score=53.86 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999987654
No 471
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.18 E-value=0.01 Score=52.15 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++++|++|.||||+.+++-....
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmLTGll~ 75 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKMLTGLLL 75 (325)
T ss_pred CCCcEEEEEcCCCCcchhhHHHHhCccc
Confidence 5678999999999999999999865543
No 472
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.18 E-value=0.0083 Score=47.88 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV 181 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 181 (375)
+..++.+.||+|+|||||...+.......-.|...+|+.-
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~ 66 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE 66 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECC
Confidence 4679999999999999999999988885544445677753
No 473
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.17 E-value=0.0079 Score=49.91 Aligned_cols=24 Identities=46% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHhhhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
|.|.|++|+|||||++.+....+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988854
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.17 E-value=0.0056 Score=41.24 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.+..|.|++|+|||||..++.--
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999876543
No 475
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.17 E-value=0.0049 Score=50.16 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....++|.||+|+|||||.+.+++-...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 4568999999999999999999886653
No 476
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.16 E-value=0.012 Score=55.39 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 128 ESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+.+++.+....+..+.|.|+||+|||+|.+.+.+..+.
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 345566666666677889999999999999999999988875
No 477
>PRK05439 pantothenate kinase; Provisional
Probab=96.16 E-value=0.021 Score=52.08 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+-+|+|.|++|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999888664
No 478
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.15 E-value=0.019 Score=57.73 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+....++|+|++|+|||||++.+......
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 45779999999999999999999876653
No 479
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.15 E-value=0.041 Score=46.36 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....++.|.|++|+||||+|+.+......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999987753
No 480
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.15 E-value=0.033 Score=48.25 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|+|++|+||||+++.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987665
No 481
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.13 E-value=0.0064 Score=52.44 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 137 ALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 137 ~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+...++++|+++|+.|+|||||...+.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34556789999999999999999999988754
No 482
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.12 E-value=0.005 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..+.|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999998754
No 483
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.0049 Score=56.59 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+...++++||+|+|||||.+.++.-...
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35679999999999999999999876653
No 484
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0051 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+.....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 485
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.10 E-value=0.0051 Score=53.32 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++|+|++|+|||||++.++....
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3467999999999999999999987654
No 486
>PRK04328 hypothetical protein; Provisional
Probab=96.09 E-value=0.031 Score=49.69 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ 183 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 183 (375)
...++.|.|++|+|||+|+.++....-.. -...+|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC
Confidence 46799999999999999999976654322 23456776554
No 487
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.09 E-value=0.0049 Score=48.07 Aligned_cols=23 Identities=57% Similarity=0.697 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHhhhh
Q 038205 146 VGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 146 i~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
|.|.|.+|+||||+|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67999999999999999998876
No 488
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0052 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+-|.|.|.+|+|||||+..+.....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 35688999999999999999996554
No 489
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.09 E-value=0.005 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.|.|+|..|+|||||.+.+.+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 3789999999999999999876543
No 490
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.09 E-value=0.0044 Score=57.21 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...++++.||+|+||||+.+.++.-..
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999976554
No 491
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0051 Score=54.15 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999987654
No 492
>PRK14529 adenylate kinase; Provisional
Probab=96.08 E-value=0.015 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.|.|.|++|+||||+++.+......
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3788999999999999999888763
No 493
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.07 E-value=0.0053 Score=52.80 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999987654
No 494
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.26 Score=44.65 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhc-------------------CCccEEEEEEecCCCCh
Q 038205 128 ESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQN-------------------NIFDKVGIATVSQDPSI 187 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~ 187 (375)
...+..+...+..+. .+...++| |.||+++|..+....--. +.++.+.|+.-..
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~---- 81 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG---- 81 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC----
Confidence 344556666666665 45678888 479999998876654211 1112222321100
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC-hh
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMF-SESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL-QQ 263 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~-~~ 263 (375)
.....++..+....+. ....+++-++|+|+++.. .....+...+..-.+++.+|++|.+ ..
T Consensus 82 ---------------~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~ 146 (290)
T PRK07276 82 ---------------QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENK 146 (290)
T ss_pred ---------------CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 0111233333222211 133456679999998764 3444444444333344666766655 44
Q ss_pred HHhhhCCC-CcccCCCCChHHHHHHHH
Q 038205 264 VCYRMGCD-PRIKLDALDQAEGLDLLR 289 (375)
Q Consensus 264 v~~~~~~~-~~~~l~~L~~~e~~~Lf~ 289 (375)
+.+...+. ..+++.+ +.++..+.+.
T Consensus 147 lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 147 VLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 54443332 5667765 6666666664
No 495
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.07 E-value=0.0054 Score=53.14 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999987653
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.06 E-value=0.031 Score=46.39 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
++.|.|++|+|||++|.++.... ...++++.-.+.++.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~ 38 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD 38 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH
Confidence 36799999999999999987651 234555555555443
No 497
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.0036 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..+++.|.|++|.||||+.+.+.-.
T Consensus 29 ~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 29 SPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCcEEEEECCCCCchHHHHHHHHHH
Confidence 3578999999999999999988654
No 498
>PHA02774 E1; Provisional
Probab=96.06 E-value=0.016 Score=56.72 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcC-CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe
Q 038205 129 SACNQIIEALKKD-STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV 181 (375)
Q Consensus 129 ~~~~~l~~~l~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 181 (375)
..+..|..++... ....+.|+||+|+|||.+|..+.+-.. -..+.|++.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 4455566666442 245899999999999999999998764 223455553
No 499
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.06 E-value=0.0061 Score=50.90 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...|.|+|++|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 500
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.06 E-value=0.0055 Score=53.35 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999987654
Done!