Query 038205
Match_columns 375
No_of_seqs 301 out of 2573
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-36 3.7E-41 300.2 19.3 235 118-372 125-376 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-31 1E-35 285.2 22.5 245 117-374 119-379 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3.4E-31 1.2E-35 267.4 15.0 219 124-374 130-370 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-29 4.9E-34 252.2 19.3 243 117-374 119-379 (591)
5 2qen_A Walker-type ATPase; unk 99.6 2.6E-15 9E-20 139.1 12.9 193 120-326 10-249 (350)
6 2fna_A Conserved hypothetical 99.6 7.3E-15 2.5E-19 136.4 12.6 191 120-327 11-254 (357)
7 1w5s_A Origin recognition comp 99.6 3E-14 1E-18 135.1 16.7 219 122-341 22-293 (412)
8 3qfl_A MLA10; coiled-coil, (CC 99.5 2.4E-14 8.2E-19 109.9 8.4 80 7-94 2-81 (115)
9 1njg_A DNA polymerase III subu 99.5 1.6E-13 5.6E-18 119.9 14.5 200 118-326 19-231 (250)
10 2qby_B CDC6 homolog 3, cell di 99.5 1.3E-12 4.6E-17 122.5 17.3 214 122-342 20-271 (384)
11 2chg_A Replication factor C sm 99.5 9.1E-13 3.1E-17 113.6 14.9 184 118-322 13-203 (226)
12 2qby_A CDC6 homolog 1, cell di 99.4 6.3E-13 2.2E-17 124.6 12.5 198 121-319 19-241 (386)
13 2v1u_A Cell division control p 99.4 2.7E-12 9.4E-17 120.3 16.7 217 122-342 19-277 (387)
14 1fnn_A CDC6P, cell division co 99.4 3.3E-11 1.1E-15 113.1 19.0 198 122-321 17-245 (389)
15 1sxj_B Activator 1 37 kDa subu 99.3 6.7E-12 2.3E-16 114.8 11.9 187 118-325 17-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.2 5E-11 1.7E-15 109.1 10.1 184 118-322 21-211 (327)
17 2chq_A Replication factor C sm 99.1 6.7E-10 2.3E-14 101.2 13.9 185 118-321 13-202 (319)
18 1jr3_A DNA polymerase III subu 99.1 9.6E-10 3.3E-14 102.5 13.2 197 118-322 12-220 (373)
19 3te6_A Regulatory protein SIR3 99.0 7.7E-09 2.6E-13 93.5 13.7 167 124-293 22-212 (318)
20 1hqc_A RUVB; extended AAA-ATPa 98.9 7.6E-09 2.6E-13 94.5 13.0 194 118-341 8-238 (324)
21 1jbk_A CLPB protein; beta barr 98.9 1.7E-09 5.8E-14 90.5 7.0 153 118-288 18-194 (195)
22 3pvs_A Replication-associated 98.9 1.9E-08 6.6E-13 95.7 14.3 176 118-320 22-212 (447)
23 3bos_A Putative DNA replicatio 98.9 3.2E-09 1.1E-13 92.4 8.3 174 119-322 25-216 (242)
24 1sxj_D Activator 1 41 kDa subu 98.9 5.1E-09 1.8E-13 96.8 9.0 195 118-321 33-233 (353)
25 1d2n_A N-ethylmaleimide-sensit 98.8 8.2E-08 2.8E-12 85.4 15.6 195 123-345 34-265 (272)
26 1sxj_A Activator 1 95 kDa subu 98.8 1.9E-08 6.6E-13 97.9 11.9 193 118-323 35-253 (516)
27 3h4m_A Proteasome-activating n 98.8 3.3E-08 1.1E-12 88.5 12.5 202 119-344 14-261 (285)
28 1sxj_E Activator 1 40 kDa subu 98.8 1.6E-08 5.4E-13 93.6 10.5 196 118-322 10-236 (354)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.8 1.5E-07 5.1E-12 83.0 15.0 181 120-322 4-221 (262)
30 2z4s_A Chromosomal replication 98.8 5.9E-08 2E-12 92.4 12.5 205 120-342 103-333 (440)
31 3syl_A Protein CBBX; photosynt 98.7 3.7E-08 1.3E-12 89.3 10.5 150 124-293 33-218 (309)
32 3u61_B DNA polymerase accessor 98.7 5.5E-08 1.9E-12 88.8 10.6 173 118-319 22-212 (324)
33 1xwi_A SKD1 protein; VPS4B, AA 98.7 8.9E-07 3.1E-11 80.7 18.3 179 120-322 10-222 (322)
34 1sxj_C Activator 1 40 kDa subu 98.7 1.2E-07 4.2E-12 87.2 12.6 181 118-319 21-208 (340)
35 1a5t_A Delta prime, HOLB; zinc 98.7 3.9E-07 1.3E-11 83.6 15.2 171 127-321 7-203 (334)
36 3pfi_A Holliday junction ATP-d 98.7 7.2E-07 2.4E-11 81.9 17.0 173 118-321 25-225 (338)
37 3d8b_A Fidgetin-like protein 1 98.6 5.7E-07 1.9E-11 83.3 15.3 181 118-322 80-294 (357)
38 3uk6_A RUVB-like 2; hexameric 98.6 2.4E-07 8.2E-12 86.1 12.8 212 121-340 43-329 (368)
39 3eie_A Vacuolar protein sortin 98.6 6.7E-07 2.3E-11 81.5 15.4 178 119-322 15-227 (322)
40 2zan_A Vacuolar protein sortin 98.6 2E-06 6.9E-11 81.9 17.9 183 118-322 130-344 (444)
41 2qp9_X Vacuolar protein sortin 98.6 7.7E-07 2.6E-11 82.3 14.0 179 119-322 48-260 (355)
42 3vfd_A Spastin; ATPase, microt 98.6 1.4E-06 4.8E-11 81.6 15.9 182 118-322 111-325 (389)
43 3b9p_A CG5977-PA, isoform A; A 98.6 1.9E-06 6.4E-11 77.5 16.0 180 118-322 17-232 (297)
44 2p65_A Hypothetical protein PF 98.6 2.3E-07 7.7E-12 77.1 8.9 52 118-169 18-69 (187)
45 3cf0_A Transitional endoplasmi 98.5 1.6E-06 5.3E-11 78.3 13.3 175 120-318 13-223 (301)
46 4b4t_J 26S protease regulatory 98.5 9.3E-06 3.2E-10 75.3 18.0 198 121-343 147-391 (405)
47 1l8q_A Chromosomal replication 98.5 1.5E-06 5.2E-11 79.2 12.7 174 121-317 10-202 (324)
48 1qvr_A CLPB protein; coiled co 98.4 9E-07 3.1E-11 91.3 11.8 157 118-292 166-345 (854)
49 3pxg_A Negative regulator of g 98.4 1.3E-06 4.5E-11 83.8 11.6 154 118-293 176-339 (468)
50 2gno_A DNA polymerase III, gam 98.4 1E-06 3.5E-11 79.5 9.2 147 127-292 2-152 (305)
51 3ec2_A DNA replication protein 98.3 4.4E-07 1.5E-11 75.3 5.7 42 127-168 19-63 (180)
52 4b4t_H 26S protease regulatory 98.3 2.9E-05 9.9E-10 73.0 18.1 198 122-343 209-452 (467)
53 4b4t_L 26S protease subunit RP 98.3 1.6E-05 5.5E-10 74.8 16.5 199 121-343 180-424 (437)
54 1in4_A RUVB, holliday junction 98.3 1.8E-05 6E-10 72.5 15.8 216 118-368 21-273 (334)
55 1lv7_A FTSH; alpha/beta domain 98.3 7.9E-05 2.7E-09 65.3 19.2 178 119-320 9-222 (257)
56 3pxi_A Negative regulator of g 98.3 5.2E-06 1.8E-10 84.6 12.9 154 118-293 176-339 (758)
57 4b4t_I 26S protease regulatory 98.3 2.3E-05 8E-10 73.0 15.7 199 121-344 181-426 (437)
58 1r6b_X CLPA protein; AAA+, N-t 98.3 1.1E-05 3.7E-10 82.3 14.7 157 118-292 182-362 (758)
59 3hu3_A Transitional endoplasmi 98.2 2.9E-05 9.8E-10 74.6 15.7 179 120-322 202-414 (489)
60 4b4t_M 26S protease regulatory 98.2 8.6E-06 2.9E-10 76.6 11.6 172 120-316 179-387 (434)
61 2ce7_A Cell division protein F 98.2 1.2E-05 4.2E-10 76.7 11.9 173 120-316 14-221 (476)
62 2r62_A Cell division protease 98.2 2.7E-06 9.1E-11 75.3 6.8 174 120-317 9-219 (268)
63 4b4t_K 26S protease regulatory 98.2 4E-05 1.4E-09 72.0 15.0 171 121-316 171-379 (428)
64 2w58_A DNAI, primosome compone 98.0 2E-05 6.8E-10 66.4 9.0 60 120-181 23-90 (202)
65 3n70_A Transport activator; si 98.0 5.7E-06 2E-10 66.0 5.1 46 123-168 2-49 (145)
66 1ofh_A ATP-dependent HSL prote 98.0 4.7E-05 1.6E-09 68.5 11.4 46 123-168 16-75 (310)
67 4fcw_A Chaperone protein CLPB; 98.0 1.8E-05 6.2E-10 71.4 8.3 46 123-168 18-72 (311)
68 2kjq_A DNAA-related protein; s 98.0 9.6E-06 3.3E-10 65.0 5.5 28 142-169 35-62 (149)
69 2bjv_A PSP operon transcriptio 97.9 1.6E-05 5.5E-10 70.1 6.3 48 121-168 5-54 (265)
70 3t15_A Ribulose bisphosphate c 97.8 0.00014 4.8E-09 65.1 11.4 27 142-168 35-61 (293)
71 3m6a_A ATP-dependent protease 97.8 0.00027 9.2E-09 68.9 14.1 45 124-168 83-133 (543)
72 3co5_A Putative two-component 97.8 6.2E-06 2.1E-10 65.6 1.8 46 123-168 5-52 (143)
73 1ojl_A Transcriptional regulat 97.8 3E-05 1E-09 70.0 6.5 46 123-168 3-50 (304)
74 3cf2_A TER ATPase, transitiona 97.7 9.1E-05 3.1E-09 74.9 9.4 172 123-318 205-409 (806)
75 3pxi_A Negative regulator of g 97.7 0.00023 8E-09 72.4 12.6 145 123-292 492-675 (758)
76 2c9o_A RUVB-like 1; hexameric 97.7 0.00011 3.8E-09 70.1 9.3 48 121-168 36-88 (456)
77 2x8a_A Nuclear valosin-contain 97.7 0.0009 3.1E-08 59.2 14.4 150 121-293 9-192 (274)
78 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00037 1.3E-08 66.9 11.8 174 118-316 27-236 (499)
79 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00015 5E-09 62.2 8.1 116 142-262 22-168 (235)
80 2pze_A Cystic fibrosis transme 97.6 0.00045 1.5E-08 59.4 10.6 28 142-169 33-60 (229)
81 2cbz_A Multidrug resistance-as 97.6 0.00043 1.5E-08 59.9 10.2 28 141-168 29-56 (237)
82 1ixz_A ATP-dependent metallopr 97.6 0.0014 4.9E-08 57.0 13.7 172 120-316 14-221 (254)
83 1n0w_A DNA repair protein RAD5 97.5 0.00059 2E-08 58.8 10.5 93 142-235 23-130 (243)
84 1iy2_A ATP-dependent metallopr 97.5 0.001 3.4E-08 58.9 11.6 172 120-316 38-245 (278)
85 2cvh_A DNA repair and recombin 97.4 0.00077 2.6E-08 57.1 10.2 89 142-236 19-117 (220)
86 3jvv_A Twitching mobility prot 97.4 4.7E-05 1.6E-09 70.0 2.3 116 141-267 121-236 (356)
87 1ypw_A Transitional endoplasmi 97.4 0.00075 2.6E-08 68.9 10.7 150 121-293 203-386 (806)
88 2bbs_A Cystic fibrosis transme 97.3 0.00082 2.8E-08 59.9 9.4 28 141-168 62-89 (290)
89 2qgz_A Helicase loader, putati 97.3 0.00044 1.5E-08 62.3 7.7 50 119-168 121-177 (308)
90 1jr3_D DNA polymerase III, del 97.3 0.0019 6.5E-08 59.0 12.1 163 135-321 10-183 (343)
91 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00016 5.4E-09 64.9 4.4 24 143-166 123-146 (331)
92 3tui_C Methionine import ATP-b 97.2 0.00065 2.2E-08 62.3 7.8 28 141-168 52-79 (366)
93 3c8u_A Fructokinase; YP_612366 97.2 0.00028 9.6E-09 59.7 4.9 41 129-169 6-48 (208)
94 3io5_A Recombination and repai 97.2 0.0026 8.8E-08 56.9 11.1 87 145-236 30-123 (333)
95 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0003 1E-08 71.6 5.8 45 123-167 459-512 (758)
96 1qvr_A CLPB protein; coiled co 97.2 0.00069 2.4E-08 69.8 8.1 46 123-168 559-613 (854)
97 1rz3_A Hypothetical protein rb 97.2 0.00047 1.6E-08 57.9 5.7 44 126-169 2-48 (201)
98 1g5t_A COB(I)alamin adenosyltr 97.1 0.00054 1.8E-08 56.9 5.3 117 143-262 28-163 (196)
99 2px0_A Flagellar biosynthesis 97.1 0.0021 7.3E-08 57.4 9.6 85 142-232 104-190 (296)
100 1v5w_A DMC1, meiotic recombina 97.1 0.0029 9.9E-08 57.8 10.6 93 142-235 121-230 (343)
101 1sky_E F1-ATPase, F1-ATP synth 97.1 0.0014 4.8E-08 61.9 8.4 92 142-234 150-255 (473)
102 3hr8_A Protein RECA; alpha and 97.1 0.0022 7.6E-08 58.7 9.4 86 142-236 60-151 (356)
103 2z43_A DNA repair and recombin 97.0 0.0041 1.4E-07 56.4 10.8 93 142-235 106-214 (324)
104 4a74_A DNA repair and recombin 97.0 0.0046 1.6E-07 52.6 10.6 43 142-184 24-70 (231)
105 1xp8_A RECA protein, recombina 96.9 0.0043 1.5E-07 57.1 10.3 84 142-235 73-163 (366)
106 3kl4_A SRP54, signal recogniti 96.9 0.029 9.9E-07 52.7 15.8 28 143-170 97-124 (433)
107 2i1q_A DNA repair and recombin 96.9 0.0042 1.4E-07 56.2 10.0 93 142-235 97-215 (322)
108 2zr9_A Protein RECA, recombina 96.9 0.005 1.7E-07 56.3 10.2 84 142-235 60-150 (349)
109 1zp6_A Hypothetical protein AT 96.9 0.00054 1.9E-08 56.8 3.4 26 141-166 7-32 (191)
110 1kgd_A CASK, peripheral plasma 96.9 0.0006 2.1E-08 56.2 3.6 26 143-168 5-30 (180)
111 3ice_A Transcription terminati 96.9 0.0014 4.7E-08 60.2 6.2 44 141-185 172-216 (422)
112 3uie_A Adenylyl-sulfate kinase 96.9 0.00067 2.3E-08 56.9 4.0 30 139-168 21-50 (200)
113 4eun_A Thermoresistant glucoki 96.9 0.00064 2.2E-08 57.0 3.7 27 141-167 27-53 (200)
114 3tr0_A Guanylate kinase, GMP k 96.9 0.00064 2.2E-08 57.0 3.7 26 142-167 6-31 (205)
115 3a00_A Guanylate kinase, GMP k 96.9 0.00055 1.9E-08 56.7 3.1 25 144-168 2-26 (186)
116 3lda_A DNA repair protein RAD5 96.8 0.0049 1.7E-07 57.4 9.9 93 142-235 177-284 (400)
117 3cf2_A TER ATPase, transitiona 96.8 0.0029 9.9E-08 64.0 8.8 170 122-315 477-682 (806)
118 3b5x_A Lipid A export ATP-bind 96.8 0.0028 9.7E-08 62.3 8.5 28 141-168 367-394 (582)
119 1ye8_A Protein THEP1, hypothet 96.8 0.00083 2.9E-08 55.3 3.6 24 145-168 2-25 (178)
120 1g8p_A Magnesium-chelatase 38 96.8 0.00076 2.6E-08 61.6 3.8 51 118-168 20-70 (350)
121 3e70_C DPA, signal recognition 96.8 0.01 3.6E-07 53.7 11.2 30 141-170 127-156 (328)
122 1qhx_A CPT, protein (chloramph 96.8 0.00082 2.8E-08 55.0 3.5 25 144-168 4-28 (178)
123 4gp7_A Metallophosphoesterase; 96.8 0.00067 2.3E-08 55.4 3.0 23 142-164 8-30 (171)
124 1kag_A SKI, shikimate kinase I 96.8 0.00075 2.6E-08 55.0 3.2 25 144-168 5-29 (173)
125 3tau_A Guanylate kinase, GMP k 96.7 0.00087 3E-08 56.6 3.7 28 141-168 6-33 (208)
126 1pzn_A RAD51, DNA repair and r 96.7 0.0078 2.7E-07 55.1 10.2 95 141-236 129-243 (349)
127 1znw_A Guanylate kinase, GMP k 96.7 0.0009 3.1E-08 56.4 3.6 28 141-168 18-45 (207)
128 3vaa_A Shikimate kinase, SK; s 96.7 0.00098 3.3E-08 55.8 3.7 27 142-168 24-50 (199)
129 3kb2_A SPBC2 prophage-derived 96.7 0.00091 3.1E-08 54.3 3.5 25 144-168 2-26 (173)
130 3asz_A Uridine kinase; cytidin 96.7 0.00095 3.2E-08 56.3 3.7 27 142-168 5-31 (211)
131 3bh0_A DNAB-like replicative h 96.7 0.02 6.9E-07 51.5 12.5 52 141-196 66-117 (315)
132 1htw_A HI0065; nucleotide-bind 96.7 0.0011 3.6E-08 53.5 3.6 27 141-167 31-57 (158)
133 1odf_A YGR205W, hypothetical 3 96.7 0.002 6.8E-08 57.4 5.6 29 141-169 29-57 (290)
134 1lvg_A Guanylate kinase, GMP k 96.7 0.00085 2.9E-08 56.2 2.9 26 143-168 4-29 (198)
135 3lw7_A Adenylate kinase relate 96.6 0.00095 3.2E-08 54.2 3.1 20 144-163 2-21 (179)
136 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4.1E-08 55.3 3.7 26 142-167 5-30 (207)
137 1u94_A RECA protein, recombina 96.6 0.0088 3E-07 54.8 9.7 85 142-235 62-152 (356)
138 1z6g_A Guanylate kinase; struc 96.6 0.001 3.4E-08 56.7 3.1 27 141-167 21-47 (218)
139 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0021 7.3E-08 58.4 5.4 107 143-264 171-277 (330)
140 2r44_A Uncharacterized protein 96.6 0.0019 6.5E-08 58.6 5.1 45 122-168 27-71 (331)
141 1vma_A Cell division protein F 96.6 0.007 2.4E-07 54.2 8.7 29 142-170 103-131 (306)
142 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.7E-08 53.5 3.7 26 142-167 7-32 (175)
143 2ck3_D ATP synthase subunit be 96.6 0.018 6E-07 54.4 11.6 93 141-234 151-263 (482)
144 1s96_A Guanylate kinase, GMP k 96.6 0.0013 4.3E-08 56.1 3.6 27 142-168 15-41 (219)
145 3dm5_A SRP54, signal recogniti 96.6 0.013 4.4E-07 55.1 10.6 29 142-170 99-127 (443)
146 2yvu_A Probable adenylyl-sulfa 96.6 0.0012 4.2E-08 54.5 3.4 29 141-169 11-39 (186)
147 1ly1_A Polynucleotide kinase; 96.6 0.0013 4.3E-08 53.8 3.3 22 144-165 3-24 (181)
148 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 4E-08 55.4 3.1 26 143-168 18-43 (202)
149 3trf_A Shikimate kinase, SK; a 96.6 0.0014 4.8E-08 54.0 3.6 26 143-168 5-30 (185)
150 2b8t_A Thymidine kinase; deoxy 96.5 0.00071 2.4E-08 57.7 1.7 109 142-261 11-125 (223)
151 2jeo_A Uridine-cytidine kinase 96.5 0.0014 4.7E-08 56.9 3.6 27 141-167 23-49 (245)
152 3tif_A Uncharacterized ABC tra 96.5 0.0013 4.6E-08 56.6 3.4 28 141-168 29-56 (235)
153 3aez_A Pantothenate kinase; tr 96.5 0.0015 5.1E-08 58.8 3.8 29 141-169 88-116 (312)
154 3qf4_A ABC transporter, ATP-bi 96.5 0.0025 8.6E-08 62.7 5.7 28 141-168 367-394 (587)
155 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.4E-08 55.3 3.2 27 142-168 11-37 (204)
156 3ney_A 55 kDa erythrocyte memb 96.5 0.0016 5.5E-08 54.3 3.7 27 142-168 18-44 (197)
157 2iw3_A Elongation factor 3A; a 96.5 0.0041 1.4E-07 64.1 7.3 118 142-267 460-610 (986)
158 2bdt_A BH3686; alpha-beta prot 96.5 0.0014 4.8E-08 54.3 3.2 22 144-165 3-24 (189)
159 2bbw_A Adenylate kinase 4, AK4 96.5 0.0016 5.5E-08 56.5 3.6 27 142-168 26-52 (246)
160 1cke_A CK, MSSA, protein (cyti 96.5 0.0017 5.7E-08 55.4 3.6 25 143-167 5-29 (227)
161 1kht_A Adenylate kinase; phosp 96.5 0.0017 6E-08 53.5 3.6 26 143-168 3-28 (192)
162 1rj9_A FTSY, signal recognitio 96.5 0.002 6.9E-08 57.8 4.2 28 142-169 101-128 (304)
163 2xxa_A Signal recognition part 96.4 0.018 6.3E-07 54.1 10.8 29 142-170 99-127 (433)
164 2hf9_A Probable hydrogenase ni 96.4 0.0035 1.2E-07 53.3 5.4 41 128-168 23-63 (226)
165 2pcj_A ABC transporter, lipopr 96.4 0.0016 5.4E-08 55.7 3.2 27 142-168 29-55 (224)
166 1ex7_A Guanylate kinase; subst 96.4 0.0016 5.5E-08 53.8 3.1 25 144-168 2-26 (186)
167 1nks_A Adenylate kinase; therm 96.4 0.0017 6E-08 53.6 3.3 26 144-169 2-27 (194)
168 2rhm_A Putative kinase; P-loop 96.4 0.002 6.8E-08 53.3 3.6 26 143-168 5-30 (193)
169 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0032 1.1E-07 60.4 5.5 44 123-168 23-66 (500)
170 2i3b_A HCR-ntpase, human cance 96.4 0.0018 6.1E-08 53.8 3.2 25 144-168 2-26 (189)
171 1b0u_A Histidine permease; ABC 96.4 0.0018 6.3E-08 56.7 3.4 28 141-168 30-57 (262)
172 3iij_A Coilin-interacting nucl 96.4 0.0019 6.5E-08 53.0 3.3 26 143-168 11-36 (180)
173 1fx0_B ATP synthase beta chain 96.4 0.012 4.1E-07 55.7 9.1 93 141-234 163-276 (498)
174 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0045 1.5E-07 56.3 5.9 43 126-168 3-49 (359)
175 2onk_A Molybdate/tungstate ABC 96.4 0.0021 7E-08 55.6 3.5 27 141-168 23-49 (240)
176 2wsm_A Hydrogenase expression/ 96.3 0.0031 1.1E-07 53.4 4.6 42 127-168 14-55 (221)
177 1via_A Shikimate kinase; struc 96.3 0.0019 6.3E-08 52.8 3.1 25 144-168 5-29 (175)
178 2olj_A Amino acid ABC transpor 96.3 0.0021 7.1E-08 56.4 3.4 28 141-168 48-75 (263)
179 1y63_A LMAJ004144AAA protein; 96.3 0.0025 8.4E-08 52.6 3.8 25 142-166 9-33 (184)
180 2ze6_A Isopentenyl transferase 96.3 0.002 7E-08 56.1 3.4 25 144-168 2-26 (253)
181 1xjc_A MOBB protein homolog; s 96.3 0.0029 9.8E-08 51.4 4.0 29 142-170 3-31 (169)
182 3gfo_A Cobalt import ATP-bindi 96.3 0.002 6.8E-08 56.9 3.3 27 142-168 33-59 (275)
183 2c95_A Adenylate kinase 1; tra 96.3 0.0024 8.3E-08 52.9 3.7 27 142-168 8-34 (196)
184 3hws_A ATP-dependent CLP prote 96.3 0.0039 1.3E-07 57.4 5.4 45 124-168 17-76 (363)
185 4e22_A Cytidylate kinase; P-lo 96.3 0.0025 8.7E-08 55.5 3.9 26 142-167 26-51 (252)
186 2qt1_A Nicotinamide riboside k 96.3 0.0023 7.8E-08 53.8 3.5 26 142-167 20-45 (207)
187 1tev_A UMP-CMP kinase; ploop, 96.3 0.0024 8.3E-08 52.8 3.5 26 143-168 3-28 (196)
188 1sgw_A Putative ABC transporte 96.3 0.0019 6.6E-08 54.7 2.9 27 142-168 34-60 (214)
189 1vpl_A ABC transporter, ATP-bi 96.3 0.0023 7.9E-08 55.9 3.4 28 141-168 39-66 (256)
190 2if2_A Dephospho-COA kinase; a 96.3 0.0022 7.7E-08 53.7 3.3 22 144-165 2-23 (204)
191 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.2E-08 53.3 3.5 24 145-168 2-25 (205)
192 2ehv_A Hypothetical protein PH 96.3 0.0023 7.9E-08 55.3 3.5 24 142-165 29-52 (251)
193 1zuh_A Shikimate kinase; alpha 96.3 0.0025 8.7E-08 51.5 3.5 26 143-168 7-32 (168)
194 3b9q_A Chloroplast SRP recepto 96.3 0.0027 9.1E-08 56.9 3.9 28 142-169 99-126 (302)
195 2bwj_A Adenylate kinase 5; pho 96.3 0.0026 8.8E-08 52.9 3.6 26 143-168 12-37 (199)
196 3b85_A Phosphate starvation-in 96.3 0.002 6.7E-08 54.4 2.8 24 143-166 22-45 (208)
197 3cm0_A Adenylate kinase; ATP-b 96.3 0.0024 8.2E-08 52.6 3.3 26 143-168 4-29 (186)
198 1g6h_A High-affinity branched- 96.3 0.0022 7.5E-08 56.1 3.2 27 142-168 32-58 (257)
199 2zu0_C Probable ATP-dependent 96.3 0.0026 8.7E-08 56.0 3.7 26 141-166 44-69 (267)
200 4g1u_C Hemin import ATP-bindin 96.3 0.0021 7.3E-08 56.4 3.1 27 142-168 36-62 (266)
201 2iyv_A Shikimate kinase, SK; t 96.3 0.0022 7.4E-08 52.8 3.0 25 144-168 3-27 (184)
202 3lnc_A Guanylate kinase, GMP k 96.3 0.0016 5.6E-08 55.8 2.3 26 142-167 26-52 (231)
203 1ji0_A ABC transporter; ATP bi 96.3 0.0023 7.8E-08 55.4 3.2 27 142-168 31-57 (240)
204 1jjv_A Dephospho-COA kinase; P 96.2 0.0023 7.8E-08 53.8 3.1 22 144-165 3-24 (206)
205 3thx_A DNA mismatch repair pro 96.2 0.002 6.7E-08 66.4 3.2 22 142-163 661-682 (934)
206 1sq5_A Pantothenate kinase; P- 96.2 0.0052 1.8E-07 55.2 5.6 28 141-168 78-105 (308)
207 1mv5_A LMRA, multidrug resista 96.2 0.0024 8.3E-08 55.3 3.3 28 141-168 26-53 (243)
208 3umf_A Adenylate kinase; rossm 96.2 0.0028 9.6E-08 53.8 3.6 27 142-168 28-54 (217)
209 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0026 8.9E-08 55.3 3.5 25 142-166 28-52 (250)
210 2plr_A DTMP kinase, probable t 96.2 0.0029 1E-07 53.1 3.7 27 143-169 4-30 (213)
211 1gvn_B Zeta; postsegregational 96.2 0.005 1.7E-07 54.7 5.3 26 142-167 32-57 (287)
212 2ghi_A Transport protein; mult 96.2 0.0026 8.8E-08 55.7 3.4 28 141-168 44-71 (260)
213 2f1r_A Molybdopterin-guanine d 96.2 0.003 1E-07 51.5 3.5 27 144-170 3-29 (171)
214 1ukz_A Uridylate kinase; trans 96.2 0.0029 1E-07 52.9 3.6 27 142-168 14-40 (203)
215 3l0o_A Transcription terminati 96.2 0.028 9.6E-07 51.6 10.2 51 133-184 164-216 (427)
216 1uf9_A TT1252 protein; P-loop, 96.2 0.0028 9.7E-08 52.8 3.5 25 142-166 7-31 (203)
217 3tqc_A Pantothenate kinase; bi 96.2 0.0051 1.8E-07 55.4 5.4 26 143-168 92-117 (321)
218 2ff7_A Alpha-hemolysin translo 96.2 0.0025 8.6E-08 55.3 3.2 27 142-168 34-60 (247)
219 2ixe_A Antigen peptide transpo 96.2 0.0026 9E-08 56.0 3.4 28 141-168 43-70 (271)
220 2eyu_A Twitching motility prot 96.2 0.0042 1.5E-07 54.4 4.7 113 140-266 22-137 (261)
221 3k1j_A LON protease, ATP-depen 96.2 0.0027 9.2E-08 62.8 3.8 49 118-168 37-85 (604)
222 2yz2_A Putative ABC transporte 96.2 0.0028 9.5E-08 55.7 3.4 28 141-168 31-58 (266)
223 2qi9_C Vitamin B12 import ATP- 96.2 0.0028 9.5E-08 55.1 3.3 27 142-168 25-51 (249)
224 3tlx_A Adenylate kinase 2; str 96.1 0.0067 2.3E-07 52.5 5.7 27 142-168 28-54 (243)
225 2vli_A Antibiotic resistance p 96.1 0.0024 8.3E-08 52.3 2.7 26 143-168 5-30 (183)
226 1e6c_A Shikimate kinase; phosp 96.1 0.0028 9.6E-08 51.4 3.1 25 144-168 3-27 (173)
227 2cdn_A Adenylate kinase; phosp 96.1 0.0038 1.3E-07 52.2 3.9 27 142-168 19-45 (201)
228 2nq2_C Hypothetical ABC transp 96.1 0.0029 1E-07 55.1 3.3 27 142-168 30-56 (253)
229 2ihy_A ABC transporter, ATP-bi 96.1 0.0029 1E-07 56.0 3.3 27 142-168 46-72 (279)
230 1um8_A ATP-dependent CLP prote 96.1 0.006 2E-07 56.4 5.6 26 143-168 72-97 (376)
231 2v9p_A Replication protein E1; 96.1 0.0037 1.3E-07 55.9 3.9 29 139-167 122-150 (305)
232 1aky_A Adenylate kinase; ATP:A 96.1 0.0036 1.2E-07 53.1 3.8 27 142-168 3-29 (220)
233 1qf9_A UMP/CMP kinase, protein 96.1 0.0033 1.1E-07 51.9 3.4 26 143-168 6-31 (194)
234 2wwf_A Thymidilate kinase, put 96.1 0.0038 1.3E-07 52.4 3.7 27 143-169 10-36 (212)
235 1nn5_A Similar to deoxythymidy 96.1 0.0041 1.4E-07 52.3 3.9 28 142-169 8-35 (215)
236 2p5t_B PEZT; postsegregational 96.1 0.0058 2E-07 53.2 4.9 27 142-168 31-57 (253)
237 2og2_A Putative signal recogni 96.1 0.004 1.4E-07 57.1 3.9 28 142-169 156-183 (359)
238 1tue_A Replication protein E1; 96.0 0.0083 2.8E-07 50.1 5.4 40 129-168 43-83 (212)
239 2pt5_A Shikimate kinase, SK; a 96.0 0.0041 1.4E-07 50.2 3.4 24 145-168 2-25 (168)
240 2ffh_A Protein (FFH); SRP54, s 96.0 0.011 3.6E-07 55.5 6.6 29 142-170 97-125 (425)
241 3vr4_D V-type sodium ATPase su 96.0 0.0099 3.4E-07 55.7 6.3 93 141-234 149-258 (465)
242 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0041 1.4E-07 54.4 3.6 26 143-168 4-29 (260)
243 2pbr_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 51.4 3.4 24 145-168 2-25 (195)
244 1m7g_A Adenylylsulfate kinase; 96.0 0.0059 2E-07 51.5 4.5 29 140-168 22-50 (211)
245 3fb4_A Adenylate kinase; psych 96.0 0.0039 1.3E-07 52.6 3.4 24 145-168 2-25 (216)
246 1zak_A Adenylate kinase; ATP:A 96.0 0.0041 1.4E-07 52.9 3.4 27 142-168 4-30 (222)
247 2v54_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 51.7 3.6 25 143-167 4-28 (204)
248 2pez_A Bifunctional 3'-phospho 96.0 0.0047 1.6E-07 50.5 3.6 28 142-169 4-31 (179)
249 1zd8_A GTP:AMP phosphotransfer 96.0 0.0042 1.4E-07 53.0 3.5 26 143-168 7-32 (227)
250 1gtv_A TMK, thymidylate kinase 96.0 0.0023 7.9E-08 53.9 1.8 25 145-169 2-26 (214)
251 3fvq_A Fe(3+) IONS import ATP- 96.0 0.0041 1.4E-07 56.9 3.6 28 141-168 28-55 (359)
252 3nh6_A ATP-binding cassette SU 95.9 0.0037 1.3E-07 56.0 3.1 28 141-168 78-105 (306)
253 3bgw_A DNAB-like replicative h 95.9 0.062 2.1E-06 50.7 11.6 39 142-182 196-234 (444)
254 2z0h_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 51.3 3.4 25 145-169 2-26 (197)
255 3dl0_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 52.4 3.3 24 145-168 2-25 (216)
256 3fwy_A Light-independent proto 95.9 0.0053 1.8E-07 55.2 4.0 32 140-171 45-76 (314)
257 1j8m_F SRP54, signal recogniti 95.9 0.024 8.3E-07 50.5 8.2 56 143-200 98-154 (297)
258 1uj2_A Uridine-cytidine kinase 95.9 0.0049 1.7E-07 53.6 3.6 27 142-168 21-47 (252)
259 1np6_A Molybdopterin-guanine d 95.9 0.01 3.4E-07 48.5 5.2 27 143-169 6-32 (174)
260 2pjz_A Hypothetical protein ST 95.8 0.0045 1.5E-07 54.2 3.2 25 143-167 30-54 (263)
261 2yhs_A FTSY, cell division pro 95.8 0.0051 1.7E-07 58.5 3.6 28 142-169 292-319 (503)
262 2j37_W Signal recognition part 95.8 0.081 2.8E-06 50.6 12.0 27 143-169 101-127 (504)
263 3d31_A Sulfate/molybdate ABC t 95.8 0.0049 1.7E-07 56.2 3.4 28 141-168 24-51 (348)
264 2grj_A Dephospho-COA kinase; T 95.8 0.0053 1.8E-07 51.0 3.3 25 143-167 12-36 (192)
265 2yyz_A Sugar ABC transporter, 95.8 0.0054 1.8E-07 56.2 3.6 28 141-168 27-54 (359)
266 3rlf_A Maltose/maltodextrin im 95.8 0.0055 1.9E-07 56.5 3.7 28 141-168 27-54 (381)
267 2it1_A 362AA long hypothetical 95.8 0.0056 1.9E-07 56.2 3.7 28 141-168 27-54 (362)
268 3sr0_A Adenylate kinase; phosp 95.8 0.0056 1.9E-07 51.5 3.4 24 145-168 2-25 (206)
269 3r20_A Cytidylate kinase; stru 95.8 0.0061 2.1E-07 52.2 3.6 26 143-168 9-34 (233)
270 3nwj_A ATSK2; P loop, shikimat 95.8 0.0052 1.8E-07 53.4 3.2 26 143-168 48-73 (250)
271 2ck3_A ATP synthase subunit al 95.8 0.019 6.7E-07 54.5 7.3 93 141-234 160-272 (510)
272 3gqb_B V-type ATP synthase bet 95.7 0.012 4E-07 55.2 5.6 94 141-234 145-261 (464)
273 1z47_A CYSA, putative ABC-tran 95.7 0.0056 1.9E-07 56.0 3.5 27 142-168 40-66 (355)
274 2r9v_A ATP synthase subunit al 95.7 0.02 6.7E-07 54.4 7.2 89 141-234 173-277 (515)
275 2qe7_A ATP synthase subunit al 95.7 0.019 6.6E-07 54.4 7.1 89 141-234 160-264 (502)
276 1v43_A Sugar-binding transport 95.7 0.0061 2.1E-07 56.1 3.7 28 141-168 35-62 (372)
277 3sop_A Neuronal-specific septi 95.7 0.0057 1.9E-07 53.8 3.3 24 145-168 4-27 (270)
278 1vht_A Dephospho-COA kinase; s 95.7 0.0068 2.3E-07 51.3 3.6 23 143-165 4-26 (218)
279 1oxx_K GLCV, glucose, ABC tran 95.7 0.0048 1.6E-07 56.5 2.8 28 141-168 29-56 (353)
280 1g41_A Heat shock protein HSLU 95.7 0.0098 3.4E-07 55.9 4.9 45 124-168 17-75 (444)
281 3be4_A Adenylate kinase; malar 95.6 0.0063 2.2E-07 51.5 3.3 26 143-168 5-30 (217)
282 1a7j_A Phosphoribulokinase; tr 95.6 0.0043 1.5E-07 55.2 2.3 27 142-168 4-30 (290)
283 3ake_A Cytidylate kinase; CMP 95.6 0.0067 2.3E-07 50.7 3.4 24 145-168 4-27 (208)
284 4eaq_A DTMP kinase, thymidylat 95.6 0.014 4.9E-07 49.8 5.5 28 142-169 25-52 (229)
285 1g29_1 MALK, maltose transport 95.6 0.0065 2.2E-07 56.0 3.5 27 142-168 28-54 (372)
286 3kta_A Chromosome segregation 95.6 0.0076 2.6E-07 49.3 3.5 25 144-168 27-51 (182)
287 4f4c_A Multidrug resistance pr 95.6 0.011 3.9E-07 63.6 5.7 28 141-168 1103-1130(1321)
288 1cr0_A DNA primase/helicase; R 95.6 0.013 4.5E-07 52.1 5.3 30 141-170 33-62 (296)
289 1oix_A RAS-related protein RAB 95.6 0.007 2.4E-07 50.0 3.2 25 144-168 30-54 (191)
290 2vp4_A Deoxynucleoside kinase; 95.6 0.0053 1.8E-07 52.6 2.5 25 142-166 19-43 (230)
291 2c61_A A-type ATP synthase non 95.5 0.012 4E-07 55.6 4.9 94 141-234 150-259 (469)
292 2xb4_A Adenylate kinase; ATP-b 95.5 0.0076 2.6E-07 51.3 3.4 24 145-168 2-25 (223)
293 1e4v_A Adenylate kinase; trans 95.5 0.0076 2.6E-07 50.9 3.3 24 145-168 2-25 (214)
294 2f6r_A COA synthase, bifunctio 95.5 0.0077 2.6E-07 53.3 3.5 24 142-165 74-97 (281)
295 1ak2_A Adenylate kinase isoenz 95.5 0.0096 3.3E-07 51.0 4.0 27 142-168 15-41 (233)
296 2v3c_C SRP54, signal recogniti 95.5 0.0062 2.1E-07 57.3 2.9 27 143-169 99-125 (432)
297 3d3q_A TRNA delta(2)-isopenten 95.5 0.0077 2.6E-07 54.5 3.4 25 144-168 8-32 (340)
298 3gd7_A Fusion complex of cysti 95.5 0.0081 2.8E-07 55.7 3.6 27 141-167 45-71 (390)
299 1svm_A Large T antigen; AAA+ f 95.4 0.0091 3.1E-07 55.1 3.8 28 140-167 166-193 (377)
300 1zu4_A FTSY; GTPase, signal re 95.4 0.011 3.7E-07 53.3 4.0 29 142-170 104-132 (320)
301 3cr8_A Sulfate adenylyltranfer 95.4 0.016 5.3E-07 56.3 5.3 29 141-169 367-395 (552)
302 3lv8_A DTMP kinase, thymidylat 95.4 0.029 9.9E-07 48.1 6.5 37 143-180 27-63 (236)
303 3p32_A Probable GTPase RV1496/ 95.4 0.03 1E-06 51.3 7.0 39 131-169 65-105 (355)
304 2ewv_A Twitching motility prot 95.4 0.013 4.3E-07 54.2 4.4 114 140-266 133-248 (372)
305 2f9l_A RAB11B, member RAS onco 95.3 0.0092 3.2E-07 49.6 3.2 24 144-167 6-29 (199)
306 1p9r_A General secretion pathw 95.3 0.016 5.4E-07 54.3 5.1 35 133-168 158-192 (418)
307 1lw7_A Transcriptional regulat 95.3 0.0097 3.3E-07 54.8 3.6 27 143-169 170-196 (365)
308 1nlf_A Regulatory protein REPA 95.3 0.0094 3.2E-07 52.6 3.4 27 142-168 29-55 (279)
309 3cmu_A Protein RECA, recombina 95.3 0.04 1.4E-06 60.9 8.7 85 141-234 1425-1515(2050)
310 3exa_A TRNA delta(2)-isopenten 95.3 0.0099 3.4E-07 53.1 3.3 26 143-168 3-28 (322)
311 4tmk_A Protein (thymidylate ki 95.3 0.034 1.2E-06 46.9 6.5 53 143-196 3-55 (213)
312 1tq4_A IIGP1, interferon-induc 95.3 0.014 4.9E-07 54.4 4.6 26 142-167 68-93 (413)
313 2obl_A ESCN; ATPase, hydrolase 95.3 0.01 3.5E-07 54.1 3.6 32 138-169 66-97 (347)
314 4gzl_A RAS-related C3 botulinu 95.3 0.0096 3.3E-07 49.7 3.1 42 126-167 13-54 (204)
315 3crm_A TRNA delta(2)-isopenten 95.3 0.0097 3.3E-07 53.5 3.3 25 144-168 6-30 (323)
316 1q3t_A Cytidylate kinase; nucl 95.3 0.012 4.2E-07 50.4 3.8 26 142-167 15-40 (236)
317 4f4c_A Multidrug resistance pr 95.2 0.026 9E-07 60.8 6.9 28 141-168 442-469 (1321)
318 3foz_A TRNA delta(2)-isopenten 95.2 0.011 3.9E-07 52.6 3.4 26 143-168 10-35 (316)
319 3zvl_A Bifunctional polynucleo 95.2 0.011 3.7E-07 55.5 3.4 27 141-167 256-282 (416)
320 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.011 3.7E-07 56.2 3.4 28 141-168 136-163 (460)
321 3ld9_A DTMP kinase, thymidylat 95.2 0.026 8.9E-07 47.9 5.5 30 140-169 18-47 (223)
322 3a8t_A Adenylate isopentenyltr 95.2 0.011 3.8E-07 53.3 3.3 26 143-168 40-65 (339)
323 1ltq_A Polynucleotide kinase; 95.1 0.011 3.9E-07 52.6 3.3 23 144-166 3-25 (301)
324 2zej_A Dardarin, leucine-rich 95.1 0.0096 3.3E-07 48.8 2.6 22 145-166 4-25 (184)
325 2qm8_A GTPase/ATPase; G protei 95.1 0.016 5.4E-07 52.7 4.3 30 140-169 52-81 (337)
326 2wji_A Ferrous iron transport 95.1 0.012 3.9E-07 47.3 3.0 23 144-166 4-26 (165)
327 1ls1_A Signal recognition part 95.1 0.016 5.4E-07 51.7 4.1 29 142-170 97-125 (295)
328 3llm_A ATP-dependent RNA helic 95.1 0.085 2.9E-06 45.0 8.6 22 143-164 76-97 (235)
329 3end_A Light-independent proto 95.1 0.035 1.2E-06 49.6 6.4 42 139-182 37-78 (307)
330 2qmh_A HPR kinase/phosphorylas 95.0 0.013 4.5E-07 48.6 3.2 26 143-168 34-59 (205)
331 3upu_A ATP-dependent DNA helic 95.0 0.051 1.7E-06 51.6 7.6 44 126-170 29-72 (459)
332 2dr3_A UPF0273 protein PH0284; 94.9 0.017 5.7E-07 49.6 3.7 39 142-182 22-60 (247)
333 2gza_A Type IV secretion syste 94.9 0.012 4.2E-07 54.0 2.9 28 142-169 174-201 (361)
334 3oaa_A ATP synthase subunit al 94.9 0.095 3.2E-06 49.6 8.9 90 141-234 160-264 (513)
335 3mfy_A V-type ATP synthase alp 94.9 0.14 4.6E-06 49.2 10.0 90 141-235 225-335 (588)
336 4edh_A DTMP kinase, thymidylat 94.9 0.05 1.7E-06 45.9 6.4 28 143-170 6-33 (213)
337 1nij_A Hypothetical protein YJ 94.8 0.013 4.3E-07 52.9 2.7 26 142-167 3-28 (318)
338 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.018 6E-07 45.7 3.3 25 143-167 23-47 (149)
339 3ozx_A RNAse L inhibitor; ATP 94.8 0.015 5E-07 56.5 3.3 26 142-167 24-49 (538)
340 2dpy_A FLII, flagellum-specifi 94.8 0.018 6E-07 54.4 3.8 32 138-169 152-183 (438)
341 2dyk_A GTP-binding protein; GT 94.8 0.017 5.7E-07 45.7 3.2 24 144-167 2-25 (161)
342 2www_A Methylmalonic aciduria 94.8 0.034 1.2E-06 50.8 5.6 27 142-168 73-99 (349)
343 1fx0_A ATP synthase alpha chai 94.8 0.022 7.4E-07 54.1 4.3 88 142-234 162-265 (507)
344 1zj6_A ADP-ribosylation factor 94.8 0.033 1.1E-06 45.5 5.0 34 132-166 6-39 (187)
345 2yv5_A YJEQ protein; hydrolase 94.8 0.023 7.9E-07 50.8 4.3 34 131-168 156-189 (302)
346 2wjg_A FEOB, ferrous iron tran 94.7 0.017 5.9E-07 47.2 3.2 23 144-166 8-30 (188)
347 1yqt_A RNAse L inhibitor; ATP- 94.7 0.018 6.1E-07 55.9 3.7 26 142-167 46-71 (538)
348 2qag_B Septin-6, protein NEDD5 94.7 0.016 5.5E-07 54.1 3.2 26 141-166 38-65 (427)
349 2ocp_A DGK, deoxyguanosine kin 94.7 0.02 6.7E-07 49.3 3.5 26 143-168 2-27 (241)
350 3hjn_A DTMP kinase, thymidylat 94.7 0.091 3.1E-06 43.6 7.5 50 145-196 2-51 (197)
351 1g8f_A Sulfate adenylyltransfe 94.6 0.032 1.1E-06 53.4 5.2 44 126-169 376-421 (511)
352 3j16_B RLI1P; ribosome recycli 94.6 0.019 6.6E-07 56.4 3.7 27 142-168 102-128 (608)
353 2orw_A Thymidine kinase; TMTK, 94.6 0.027 9.4E-07 46.3 4.0 27 143-169 3-29 (184)
354 3cmw_A Protein RECA, recombina 94.6 0.094 3.2E-06 57.2 9.1 86 142-236 731-822 (1706)
355 1fzq_A ADP-ribosylation factor 94.6 0.02 6.7E-07 46.7 3.1 25 142-166 15-39 (181)
356 1u0j_A DNA replication protein 94.6 0.04 1.4E-06 48.0 5.1 38 130-167 89-128 (267)
357 3eph_A TRNA isopentenyltransfe 94.6 0.021 7.3E-07 52.8 3.6 25 144-168 3-27 (409)
358 2ce2_X GTPase HRAS; signaling 94.6 0.018 6.2E-07 45.6 2.8 23 145-167 5-27 (166)
359 2rcn_A Probable GTPase ENGC; Y 94.5 0.034 1.2E-06 50.8 4.9 26 143-168 215-240 (358)
360 1yrb_A ATP(GTP)binding protein 94.5 0.033 1.1E-06 48.3 4.7 26 143-168 14-39 (262)
361 1pui_A ENGB, probable GTP-bind 94.5 0.0093 3.2E-07 49.9 1.1 27 141-167 24-50 (210)
362 3ozx_A RNAse L inhibitor; ATP 94.5 0.019 6.4E-07 55.7 3.3 28 142-169 293-320 (538)
363 1z2a_A RAS-related protein RAB 94.5 0.02 6.8E-07 45.6 3.0 24 144-167 6-29 (168)
364 2lkc_A Translation initiation 94.5 0.027 9.3E-07 45.4 3.8 25 142-166 7-31 (178)
365 1yqt_A RNAse L inhibitor; ATP- 94.5 0.021 7E-07 55.5 3.5 28 142-169 311-338 (538)
366 3k9g_A PF-32 protein; ssgcid, 94.5 0.18 6.1E-06 43.8 9.4 41 141-184 25-66 (267)
367 3v9p_A DTMP kinase, thymidylat 94.5 0.047 1.6E-06 46.5 5.3 28 142-169 24-51 (227)
368 2ged_A SR-beta, signal recogni 94.5 0.026 8.9E-07 46.3 3.6 26 142-167 47-72 (193)
369 1moz_A ARL1, ADP-ribosylation 94.5 0.021 7.1E-07 46.4 3.0 25 141-165 16-40 (183)
370 2gj8_A MNME, tRNA modification 94.5 0.02 6.9E-07 46.3 2.9 24 144-167 5-28 (172)
371 4akg_A Glutathione S-transfera 94.4 0.28 9.6E-06 56.1 12.7 136 144-292 1268-1431(2695)
372 3euj_A Chromosome partition pr 94.4 0.024 8.1E-07 53.9 3.7 26 144-169 30-55 (483)
373 2nzj_A GTP-binding protein REM 94.4 0.02 7E-07 45.9 2.8 24 144-167 5-28 (175)
374 3bk7_A ABC transporter ATP-bin 94.4 0.022 7.6E-07 56.0 3.5 123 142-268 381-538 (607)
375 3b60_A Lipid A export ATP-bind 94.3 0.023 7.7E-07 55.8 3.5 28 141-168 367-394 (582)
376 3vr4_A V-type sodium ATPase ca 94.3 0.15 5.2E-06 49.0 8.9 57 134-194 222-280 (600)
377 1u0l_A Probable GTPase ENGC; p 94.3 0.022 7.7E-07 50.8 3.2 35 131-168 160-194 (301)
378 2h92_A Cytidylate kinase; ross 94.3 0.024 8.1E-07 47.8 3.2 24 144-167 4-27 (219)
379 3bk7_A ABC transporter ATP-bin 94.3 0.023 7.8E-07 55.9 3.4 26 142-167 116-141 (607)
380 1u8z_A RAS-related protein RAL 94.3 0.023 7.7E-07 45.2 2.9 24 144-167 5-28 (168)
381 2qnr_A Septin-2, protein NEDD5 94.3 0.018 6E-07 51.5 2.4 22 145-166 20-41 (301)
382 3gmt_A Adenylate kinase; ssgci 94.3 0.027 9.3E-07 48.0 3.4 25 144-168 9-33 (230)
383 1kao_A RAP2A; GTP-binding prot 94.3 0.025 8.5E-07 44.8 3.0 23 145-167 5-27 (167)
384 1nrj_B SR-beta, signal recogni 94.3 0.029 1E-06 47.1 3.6 26 142-167 11-36 (218)
385 3cmu_A Protein RECA, recombina 94.2 0.16 5.4E-06 56.3 9.9 84 142-234 382-471 (2050)
386 1z0j_A RAB-22, RAS-related pro 94.2 0.025 8.5E-07 45.1 2.9 23 145-167 8-30 (170)
387 2erx_A GTP-binding protein DI- 94.2 0.025 8.7E-07 45.1 3.0 23 144-166 4-26 (172)
388 1z08_A RAS-related protein RAB 94.2 0.024 8.3E-07 45.2 2.9 24 144-167 7-30 (170)
389 1ek0_A Protein (GTP-binding pr 94.2 0.025 8.4E-07 45.1 2.9 23 145-167 5-27 (170)
390 1c1y_A RAS-related protein RAP 94.2 0.026 9E-07 44.8 3.0 22 145-166 5-26 (167)
391 1r8s_A ADP-ribosylation factor 94.2 0.028 9.4E-07 44.6 3.1 23 145-167 2-24 (164)
392 1f6b_A SAR1; gtpases, N-termin 94.2 0.03 1E-06 46.4 3.4 24 142-165 24-47 (198)
393 1ky3_A GTP-binding protein YPT 94.2 0.026 8.7E-07 45.6 2.9 25 143-167 8-32 (182)
394 3con_A GTPase NRAS; structural 94.2 0.026 8.9E-07 46.2 3.0 24 144-167 22-45 (190)
395 3q85_A GTP-binding protein REM 94.1 0.025 8.6E-07 45.1 2.8 21 145-165 4-24 (169)
396 3j16_B RLI1P; ribosome recycli 94.1 0.027 9.4E-07 55.3 3.5 119 144-268 379-534 (608)
397 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.027 9.1E-07 45.4 2.9 24 144-167 8-31 (177)
398 1p5z_B DCK, deoxycytidine kina 94.1 0.018 6E-07 50.3 1.9 27 142-168 23-49 (263)
399 2hxs_A RAB-26, RAS-related pro 94.1 0.03 1E-06 45.1 3.2 24 144-167 7-30 (178)
400 2r8r_A Sensor protein; KDPD, P 94.1 0.043 1.5E-06 46.5 4.1 26 145-170 8-33 (228)
401 3q72_A GTP-binding protein RAD 94.1 0.026 8.7E-07 44.9 2.7 22 145-166 4-25 (166)
402 1m7b_A RND3/RHOE small GTP-bin 94.1 0.026 9E-07 46.0 2.8 24 144-167 8-31 (184)
403 3ihw_A Centg3; RAS, centaurin, 94.0 0.029 9.8E-07 45.9 3.0 24 144-167 21-44 (184)
404 1svi_A GTP-binding protein YSX 94.0 0.03 1E-06 45.9 3.2 26 142-167 22-47 (195)
405 1g16_A RAS-related protein SEC 94.0 0.029 9.8E-07 44.7 2.9 24 144-167 4-27 (170)
406 2fn4_A P23, RAS-related protei 94.0 0.028 9.5E-07 45.3 2.9 24 143-166 9-32 (181)
407 2yl4_A ATP-binding cassette SU 94.0 0.022 7.7E-07 56.0 2.7 28 141-168 368-395 (595)
408 1cp2_A CP2, nitrogenase iron p 94.0 0.037 1.3E-06 48.3 3.7 27 144-170 2-28 (269)
409 2p67_A LAO/AO transport system 93.9 0.055 1.9E-06 49.2 5.0 29 140-168 53-81 (341)
410 1m2o_B GTP-binding protein SAR 93.9 0.03 1E-06 46.0 2.9 24 143-166 23-46 (190)
411 1r2q_A RAS-related protein RAB 93.9 0.032 1.1E-06 44.4 3.0 23 144-166 7-29 (170)
412 3pqc_A Probable GTP-binding pr 93.9 0.035 1.2E-06 45.4 3.3 25 143-167 23-47 (195)
413 3qf4_B Uncharacterized ABC tra 93.8 0.026 9E-07 55.5 2.8 28 141-168 379-406 (598)
414 3t1o_A Gliding protein MGLA; G 93.8 0.032 1.1E-06 45.7 3.0 24 144-167 15-38 (198)
415 1upt_A ARL1, ADP-ribosylation 93.8 0.034 1.1E-06 44.4 3.0 24 143-166 7-30 (171)
416 1ksh_A ARF-like protein 2; sma 93.8 0.035 1.2E-06 45.2 3.1 27 141-167 16-42 (186)
417 4dsu_A GTPase KRAS, isoform 2B 93.8 0.032 1.1E-06 45.4 2.9 23 145-167 6-28 (189)
418 3fdi_A Uncharacterized protein 93.8 0.039 1.3E-06 46.0 3.5 26 143-168 6-31 (201)
419 3c5c_A RAS-like protein 12; GD 93.8 0.032 1.1E-06 45.7 2.9 25 143-167 21-45 (187)
420 2qag_C Septin-7; cell cycle, c 93.8 0.028 9.6E-07 52.6 2.8 24 145-168 33-56 (418)
421 1t9h_A YLOQ, probable GTPase E 93.8 0.02 6.8E-07 51.2 1.7 26 143-168 173-198 (307)
422 2oap_1 GSPE-2, type II secreti 93.8 0.03 1E-06 53.8 3.0 26 143-168 260-285 (511)
423 2bme_A RAB4A, RAS-related prot 93.8 0.032 1.1E-06 45.3 2.8 24 144-167 11-34 (186)
424 2cxx_A Probable GTP-binding pr 93.8 0.029 1E-06 45.7 2.5 23 145-167 3-25 (190)
425 2j9r_A Thymidine kinase; TK1, 93.8 0.065 2.2E-06 45.0 4.6 110 142-262 27-138 (214)
426 3tqf_A HPR(Ser) kinase; transf 93.7 0.042 1.5E-06 44.4 3.3 24 143-166 16-39 (181)
427 1z0f_A RAB14, member RAS oncog 93.7 0.035 1.2E-06 44.6 3.0 25 143-167 15-39 (179)
428 2iwr_A Centaurin gamma 1; ANK 93.7 0.029 9.8E-07 45.3 2.4 23 144-166 8-30 (178)
429 3bc1_A RAS-related protein RAB 93.7 0.035 1.2E-06 45.3 3.0 24 144-167 12-35 (195)
430 3tw8_B RAS-related protein RAB 93.7 0.029 9.8E-07 45.3 2.4 25 143-167 9-33 (181)
431 2y8e_A RAB-protein 6, GH09086P 93.7 0.033 1.1E-06 44.8 2.8 23 144-166 15-37 (179)
432 3kkq_A RAS-related protein M-R 93.7 0.034 1.2E-06 45.1 2.9 24 144-167 19-42 (183)
433 3iqw_A Tail-anchored protein t 93.7 0.1 3.5E-06 47.2 6.3 32 138-169 11-42 (334)
434 2oil_A CATX-8, RAS-related pro 93.7 0.036 1.2E-06 45.5 3.0 24 144-167 26-49 (193)
435 3kjh_A CO dehydrogenase/acetyl 93.7 0.086 2.9E-06 45.1 5.5 39 145-185 2-40 (254)
436 2afh_E Nitrogenase iron protei 93.7 0.048 1.6E-06 48.2 4.0 28 143-170 2-29 (289)
437 4a82_A Cystic fibrosis transme 93.6 0.022 7.6E-07 55.8 1.8 28 141-168 365-392 (578)
438 2cjw_A GTP-binding protein GEM 93.6 0.038 1.3E-06 45.6 3.0 22 144-165 7-28 (192)
439 2a9k_A RAS-related protein RAL 93.6 0.036 1.2E-06 44.9 2.9 24 144-167 19-42 (187)
440 3f9v_A Minichromosome maintena 93.6 0.022 7.4E-07 56.0 1.7 24 145-168 329-352 (595)
441 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.036 1.2E-06 44.9 2.9 22 145-166 7-28 (186)
442 1ega_A Protein (GTP-binding pr 93.6 0.037 1.3E-06 49.4 3.1 24 143-166 8-31 (301)
443 2efe_B Small GTP-binding prote 93.6 0.036 1.2E-06 44.7 2.9 24 144-167 13-36 (181)
444 2axn_A 6-phosphofructo-2-kinas 93.6 0.044 1.5E-06 52.9 3.8 27 142-168 34-60 (520)
445 3gee_A MNME, tRNA modification 93.6 0.12 4E-06 49.3 6.7 22 145-166 235-256 (476)
446 3qks_A DNA double-strand break 93.6 0.043 1.5E-06 45.9 3.3 26 143-168 23-48 (203)
447 3bwd_D RAC-like GTP-binding pr 93.6 0.038 1.3E-06 44.7 2.9 24 143-166 8-31 (182)
448 2bov_A RAla, RAS-related prote 93.6 0.037 1.3E-06 45.8 2.9 25 143-167 14-38 (206)
449 3tmk_A Thymidylate kinase; pho 93.6 0.05 1.7E-06 45.9 3.7 28 142-169 4-31 (216)
450 2zts_A Putative uncharacterize 93.5 0.06 2.1E-06 46.1 4.3 25 142-166 29-53 (251)
451 3cbq_A GTP-binding protein REM 93.5 0.03 1E-06 46.3 2.2 22 143-164 23-44 (195)
452 3dz8_A RAS-related protein RAB 93.5 0.041 1.4E-06 45.1 3.0 24 144-167 24-47 (191)
453 1vg8_A RAS-related protein RAB 93.5 0.039 1.3E-06 45.8 2.9 25 143-167 8-32 (207)
454 2g6b_A RAS-related protein RAB 93.5 0.041 1.4E-06 44.4 3.0 24 144-167 11-34 (180)
455 3io3_A DEHA2D07832P; chaperone 93.5 0.1 3.5E-06 47.5 5.9 31 138-168 13-43 (348)
456 3t5g_A GTP-binding protein RHE 93.5 0.039 1.3E-06 44.7 2.8 25 143-167 6-30 (181)
457 3cmw_A Protein RECA, recombina 93.5 0.14 4.9E-06 55.8 7.8 84 142-235 1430-1520(1706)
458 1q57_A DNA primase/helicase; d 93.5 0.37 1.3E-05 46.2 10.1 51 142-195 241-291 (503)
459 2ew1_A RAS-related protein RAB 93.4 0.041 1.4E-06 45.8 2.9 24 143-166 26-49 (201)
460 3clv_A RAB5 protein, putative; 93.4 0.042 1.4E-06 45.2 3.0 25 143-167 7-31 (208)
461 2atv_A RERG, RAS-like estrogen 93.4 0.048 1.6E-06 44.9 3.4 25 142-166 27-51 (196)
462 2b6h_A ADP-ribosylation factor 93.4 0.031 1.1E-06 46.0 2.2 25 141-165 27-51 (192)
463 2fg5_A RAB-22B, RAS-related pr 93.4 0.042 1.4E-06 45.1 3.0 24 144-167 24-47 (192)
464 1tf7_A KAIC; homohexamer, hexa 93.4 0.041 1.4E-06 53.3 3.2 22 142-163 38-59 (525)
465 1gwn_A RHO-related GTP-binding 93.4 0.04 1.4E-06 46.0 2.8 25 143-167 28-52 (205)
466 2o5v_A DNA replication and rep 93.4 0.046 1.6E-06 50.0 3.4 23 144-166 27-49 (359)
467 2gf9_A RAS-related protein RAB 93.4 0.042 1.4E-06 44.9 2.9 24 144-167 23-46 (189)
468 3lxx_A GTPase IMAP family memb 93.4 0.042 1.4E-06 47.0 3.0 27 142-168 28-54 (239)
469 3qkt_A DNA double-strand break 93.3 0.047 1.6E-06 49.6 3.4 23 143-165 23-45 (339)
470 1zbd_A Rabphilin-3A; G protein 93.3 0.044 1.5E-06 45.4 2.9 24 144-167 9-32 (203)
471 1zd9_A ADP-ribosylation factor 93.3 0.046 1.6E-06 44.7 3.0 24 144-167 23-46 (188)
472 3oes_A GTPase rhebl1; small GT 93.3 0.044 1.5E-06 45.3 2.9 25 143-167 24-48 (201)
473 2a5j_A RAS-related protein RAB 93.3 0.046 1.6E-06 44.8 3.0 24 144-167 22-45 (191)
474 2gf0_A GTP-binding protein DI- 93.3 0.046 1.6E-06 44.9 3.0 24 143-166 8-31 (199)
475 3tkl_A RAS-related protein RAB 93.3 0.045 1.5E-06 44.9 2.9 24 144-167 17-40 (196)
476 4a1f_A DNAB helicase, replicat 93.2 0.15 5.1E-06 46.2 6.5 51 142-196 45-95 (338)
477 2qu8_A Putative nucleolar GTP- 93.2 0.052 1.8E-06 46.0 3.3 25 142-166 28-52 (228)
478 2fz4_A DNA repair protein RAD2 93.2 0.18 6E-06 43.2 6.7 23 145-167 110-132 (237)
479 2fh5_B SR-beta, signal recogni 93.2 0.044 1.5E-06 45.8 2.9 25 143-167 7-31 (214)
480 1mky_A Probable GTP-binding pr 93.2 0.096 3.3E-06 49.4 5.5 44 124-167 150-204 (439)
481 3reg_A RHO-like small GTPase; 93.2 0.048 1.6E-06 44.8 3.0 25 143-167 23-47 (194)
482 4b3f_X DNA-binding protein smu 93.2 0.14 4.8E-06 50.9 6.9 60 130-195 194-254 (646)
483 3geh_A MNME, tRNA modification 93.2 0.21 7.2E-06 47.3 7.8 23 145-167 226-248 (462)
484 1z06_A RAS-related protein RAB 93.2 0.05 1.7E-06 44.5 3.0 24 143-166 20-43 (189)
485 1m8p_A Sulfate adenylyltransfe 93.2 0.061 2.1E-06 52.5 4.1 28 142-169 395-422 (573)
486 3llu_A RAS-related GTP-binding 93.2 0.044 1.5E-06 45.2 2.8 24 143-166 20-43 (196)
487 2o52_A RAS-related protein RAB 93.2 0.044 1.5E-06 45.4 2.7 25 143-167 25-49 (200)
488 1c9k_A COBU, adenosylcobinamid 93.2 0.045 1.6E-06 44.7 2.7 22 145-166 1-22 (180)
489 2gks_A Bifunctional SAT/APS ki 93.2 0.1 3.4E-06 50.7 5.6 42 128-169 355-398 (546)
490 2p5s_A RAS and EF-hand domain 93.1 0.047 1.6E-06 45.1 2.8 26 142-167 27-52 (199)
491 3hdt_A Putative kinase; struct 93.1 0.065 2.2E-06 45.5 3.7 27 142-168 13-39 (223)
492 3k53_A Ferrous iron transport 93.1 0.055 1.9E-06 47.4 3.4 24 144-167 4-27 (271)
493 1qhl_A Protein (cell division 93.1 0.0094 3.2E-07 50.9 -1.6 25 145-169 29-53 (227)
494 2q3h_A RAS homolog gene family 93.1 0.047 1.6E-06 45.1 2.8 25 143-167 20-44 (201)
495 1x3s_A RAS-related protein RAB 93.1 0.049 1.7E-06 44.5 2.9 24 144-167 16-39 (195)
496 2bcg_Y Protein YP2, GTP-bindin 93.1 0.05 1.7E-06 45.1 2.9 24 144-167 9-32 (206)
497 3qf7_A RAD50; ABC-ATPase, ATPa 93.0 0.056 1.9E-06 49.6 3.4 23 144-166 24-46 (365)
498 1ypw_A Transitional endoplasmi 93.0 0.027 9.2E-07 57.5 1.4 47 122-168 477-536 (806)
499 4hlc_A DTMP kinase, thymidylat 93.0 0.18 6.2E-06 42.1 6.3 25 144-168 3-27 (205)
500 2il1_A RAB12; G-protein, GDP, 93.0 0.043 1.5E-06 45.1 2.4 24 144-167 27-50 (192)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-36 Score=300.18 Aligned_cols=235 Identities=18% Similarity=0.173 Sum_probs=182.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhcC---CCcEEEEEcCCCchHHHHHHHHHh--hhhhcCCccEEEEEEecCCC--ChhHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKD---STKMVGLHGLGGVGKTTLAKFVGN--QLRQNNIFDKVGIATVSQDP--SIINV 190 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~ 190 (375)
|.....| ||+.++++|.++|..+ +.++|+|+||||+||||||+.+|+ +.+...+|+.++|+++++.+ +...+
T Consensus 125 p~~~~~~-GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 125 PKQMTCY-IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp BCCCCSC-CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCccC-CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence 3333335 9999999999999654 578999999999999999999998 56667899999999999875 78899
Q ss_pred HHHHHHHhCCCCC--------CCCHHHHHHHHHHHhhhcCCC-cEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCC
Q 038205 191 QSELVKSLGWALT--------EKDEEDRADRLRLMFSESKSR-KILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 191 ~~~i~~~l~~~~~--------~~~~~~~~~~l~~~~~~l~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~ 261 (375)
+..|+.+++.... ..+.......+.+ .+.++ ||||||||||+..++ .+. ..+||+||||||+
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~---~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~ 274 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICN---ALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHH---HHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESB
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHH---HHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCC
Confidence 9999999975421 1123445666666 88896 999999999998754 111 1268999999999
Q ss_pred hhHHhhhC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHH
Q 038205 262 QQVCYRMG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALDK 340 (375)
Q Consensus 262 ~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~~ 340 (375)
..++..++ ...++++++|+.++||+||.+.++....++.+.+++++|+++|+|+||||+++|+.|+.++ |+.+ +.
T Consensus 275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~ 350 (549)
T 2a5y_B 275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQ 350 (549)
T ss_dssp GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HH
T ss_pred HHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HH
Confidence 99998776 3367999999999999999999885544477888999999999999999999999998774 4332 33
Q ss_pred hhhcccCCCCCCCCCchhhhhhhhhhccCCCC
Q 038205 341 LQNAKLDKIEGIDKDSRGVYGCLKFSYDYLNG 372 (375)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 372 (375)
+...... . ....+.++|.+||++||+
T Consensus 351 l~~~l~~-~-----~~~~i~~~l~~Sy~~L~~ 376 (549)
T 2a5y_B 351 LNNKLES-R-----GLVGVECITPYSYKSLAM 376 (549)
T ss_dssp HHHHHHH-H-----CSSTTCCCSSSSSSSHHH
T ss_pred hHHHhhc-c-----cHHHHHHHHhcccccccH
Confidence 3322100 0 013478889999999975
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.9e-31 Score=285.19 Aligned_cols=245 Identities=25% Similarity=0.403 Sum_probs=194.0
Q ss_pred CCCCCCCccchHHHHHHHHHHHh--cCCCcEEEEEcCCCchHHHHHHHHHhhhhh-cC-CccEEEEEEecCCCC--hhHH
Q 038205 117 IPRFFSSFETTESACNQIIEALK--KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-NN-IFDKVGIATVSQDPS--IINV 190 (375)
Q Consensus 117 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~ 190 (375)
+|+....|+||++++++|.++|. .++.++|+|+||||+||||||++++++.+. .. .++.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 56777889999999999999995 356789999999999999999999998653 33 456788999988543 4445
Q ss_pred HHHHHHHhCCCCC-----CCCHHHHHHHHHHHhhhcCCC--cEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChh
Q 038205 191 QSELVKSLGWALT-----EKDEEDRADRLRLMFSESKSR--KILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQ 263 (375)
Q Consensus 191 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~~~~l~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~ 263 (375)
+..++..+..... ....+.....++. .+.++ |+||||||+|+..+|..+ .+||+||||||++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRV---LMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHH---HTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHH---HHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 6777777764321 2344566666666 77776 999999999998777654 46899999999999
Q ss_pred HHhh-hCCCCcccCCC-CChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHh
Q 038205 264 VCYR-MGCDPRIKLDA-LDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALDKL 341 (375)
Q Consensus 264 v~~~-~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~~l 341 (375)
++.. ......+++.+ |+.+++++||...++.. .+.+.+.+++|+++|+|+||||+.+|++|+.+. .+|..+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 8854 45557889996 99999999999988533 345567899999999999999999999999875 5799999999
Q ss_pred hhcccCCCCCCC-CCchhhhhhhhhhccCCCCCC
Q 038205 342 QNAKLDKIEGID-KDSRGVYGCLKFSYDYLNGED 374 (375)
Q Consensus 342 ~~~~~~~~~~~~-~~~~~~~~~l~~sy~~L~~~~ 374 (375)
.......+.... .....+..+|.+||+.||+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~ 379 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI 379 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTT
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHH
Confidence 876544443322 233679999999999999875
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=3.4e-31 Score=267.37 Aligned_cols=219 Identities=21% Similarity=0.188 Sum_probs=171.0
Q ss_pred ccchHHHHHHHHHHHhc-CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccE-EEEEEecCCCChhHHHHHHHHHhCC-
Q 038205 124 FETTESACNQIIEALKK-DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDK-VGIATVSQDPSIINVQSELVKSLGW- 200 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~- 200 (375)
.+||+.++++|.++|.. ++.++|+|+||||+||||||+.++++.+...+|+. ++|+++++.++...++..++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999876 55789999999999999999999998766678987 9999999998888888877775421
Q ss_pred --CCC--CC-------CHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhhhC
Q 038205 201 --ALT--EK-------DEEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYRMG 269 (375)
Q Consensus 201 --~~~--~~-------~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~~~ 269 (375)
... .. +.+.....++.+++.+.++|+||||||+|+...|+.+. +||+||||||+..++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 111 00 11334555666444568899999999999988887652 6899999999999886544
Q ss_pred CCCcccCC------CCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCC--CHHHHHHHHHHh
Q 038205 270 CDPRIKLD------ALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLR--TADEWNVALDKL 341 (375)
Q Consensus 270 ~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~--~~~~w~~~l~~l 341 (375)
....+.++ +|+.+|||+||.+.++.. ..++..+ .|+|+||||+++|+.|+.+ +.++|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 43456666 999999999999986432 1233333 3999999999999999977 67888652
Q ss_pred hhcccCCCCCCCCCchhhhhhhhhhccCCCCCC
Q 038205 342 QNAKLDKIEGIDKDSRGVYGCLKFSYDYLNGED 374 (375)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 374 (375)
....+..+|.+||+.||+++
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~ee 370 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEPAE 370 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCTTH
T ss_pred -------------ChhHHHHHHHHHHHhCCHHH
Confidence 12469999999999999864
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=252.18 Aligned_cols=243 Identities=27% Similarity=0.417 Sum_probs=181.5
Q ss_pred CCCCCCCccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhh-cCCc-cEEEEEEecCCCChhHHHH
Q 038205 117 IPRFFSSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-NNIF-DKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 117 ~~~~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 192 (375)
+|+....|+||+.++++|.++|.. ++.++|+|+||||+||||||..++++... ..+| +.++|++++... ...++.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHH
Confidence 467778899999999999999963 45789999999999999999999988654 5678 479999998763 333333
Q ss_pred ---HHHHHhCCC-----CCCCCHHHHHHHHHHHhhhcCC--CcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 193 ---ELVKSLGWA-----LTEKDEEDRADRLRLMFSESKS--RKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 193 ---~i~~~l~~~-----~~~~~~~~~~~~l~~~~~~l~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
.++..++.. ....+.......+.. .+.+ +++||||||+|+...+..+ .+|++||||||+.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRI---LMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHH---HHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHH---HHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 344455421 122344555566665 5544 7999999999987666543 4579999999999
Q ss_pred hHHhhhCCCCccc---CCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHH
Q 038205 263 QVCYRMGCDPRIK---LDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALD 339 (375)
Q Consensus 263 ~v~~~~~~~~~~~---l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~~~~~~~w~~~l~ 339 (375)
.++..+.. ..++ +++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.|+.+. .+|..+++
T Consensus 268 ~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 268 SVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 88765432 2333 36899999999999998742 223356789999999999999999999998763 47999999
Q ss_pred HhhhcccCCCCCC-CCCchhhhhhhhhhccCCCCCC
Q 038205 340 KLQNAKLDKIEGI-DKDSRGVYGCLKFSYDYLNGED 374 (375)
Q Consensus 340 ~l~~~~~~~~~~~-~~~~~~~~~~l~~sy~~L~~~~ 374 (375)
.+.......+... .....++..+|..||+.||+++
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~ 379 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI 379 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTT
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHH
Confidence 8887543333221 1234679999999999999874
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=2.6e-15 Score=139.06 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=126.4
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC------ChhHHHHH
Q 038205 120 FFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP------SIINVQSE 193 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~ 193 (375)
....|+||+++++.|.+++..+ +++.|+|++|+|||||++.+.+... .+|+...... +...++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 4467899999999999998764 7999999999999999999987641 5676654322 45556666
Q ss_pred HHHHhCC-----------------CC--CCCCHHHHHHHHHHHhhhcCC-CcEEEEEeCCCCccc---------ccccCC
Q 038205 194 LVKSLGW-----------------AL--TEKDEEDRADRLRLMFSESKS-RKILVILDDVWKELD---------LETIGI 244 (375)
Q Consensus 194 i~~~l~~-----------------~~--~~~~~~~~~~~l~~~~~~l~~-kr~LlVlDdv~~~~~---------~~~l~~ 244 (375)
+...+.. .. ...........+.. .... ++++|||||++.... +..+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELND---LGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHH---HHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHH---HHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6655432 00 01122333333333 3322 389999999976432 121211
Q ss_pred CCCCCCCCcEEEEEeCChhHHhhh-----------CC-CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHc
Q 038205 245 PVGDRDNCCKILLTTRLQQVCYRM-----------GC-DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADEC 312 (375)
Q Consensus 245 ~l~~~~~gs~IivTTr~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~ 312 (375)
.. ...++.++|+|++.......+ +. ...+++.+|+.+|+.+++...+...... ...+.+..|+..|
T Consensus 158 ~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~t 235 (350)
T 2qen_A 158 AY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELL 235 (350)
T ss_dssp HH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHH
T ss_pred HH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHh
Confidence 11 112467899998876532211 11 2368999999999999998765321111 1246778999999
Q ss_pred CCchhHHHHHHHHh
Q 038205 313 KGLPLAIKAVGSAL 326 (375)
Q Consensus 313 ~glPlai~~i~~~L 326 (375)
+|+|+++..++..+
T Consensus 236 gG~P~~l~~~~~~~ 249 (350)
T 2qen_A 236 DGIPGWLVVFGVEY 249 (350)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988654
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=7.3e-15 Score=136.37 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=120.8
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC-----CChhHHHHHH
Q 038205 120 FFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD-----PSIINVQSEL 194 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i 194 (375)
....|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+..... .+....+..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 34678999999999999 765 69999999999999999999987642 2467776542 2334444444
Q ss_pred HHHhC-------------CCC-----------------CCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-----cc
Q 038205 195 VKSLG-------------WAL-----------------TEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-----DL 239 (375)
Q Consensus 195 ~~~l~-------------~~~-----------------~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----~~ 239 (375)
...+. ... ...........+.+ ... ++++|||||++... ++
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ---ASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH---TCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHh---cCC-CCeEEEEECHHHhhccCchhH
Confidence 33321 000 01112222233322 222 49999999997532 22
Q ss_pred cccCCCCCCCCCCcEEEEEeCChhHHhh----------h-CC-CCcccCCCCChHHHHHHHHHHcCC-CCCCCCchHHHH
Q 038205 240 ETIGIPVGDRDNCCKILLTTRLQQVCYR----------M-GC-DPRIKLDALDQAEGLDLLRKHAGI-DVADKTMTDVSK 306 (375)
Q Consensus 240 ~~l~~~l~~~~~gs~IivTTr~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~ 306 (375)
..+...+....++.++|+|++....... . +. ...+.+.+|+.+++.+++...+.. ...... . .
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~ 233 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-E 233 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-H
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-H
Confidence 1111111111246789999998653221 1 11 246889999999999999876531 111222 1 7
Q ss_pred HHHHHcCCchhHHHHHHHHhc
Q 038205 307 RVADECKGLPLAIKAVGSALR 327 (375)
Q Consensus 307 ~i~~~~~glPlai~~i~~~L~ 327 (375)
.|+..|+|+|+++..++..+.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHc
Confidence 899999999999999987764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=3e-14 Score=135.05 Aligned_cols=219 Identities=19% Similarity=0.154 Sum_probs=138.9
Q ss_pred CCccchHHHHHHHHHHH-hc------CCCcEEEE--EcCCCchHHHHHHHHHhhhhhc---CCcc-EEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEAL-KK------DSTKMVGL--HGLGGVGKTTLAKFVGNQLRQN---NIFD-KVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l-~~------~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~~ 188 (375)
..++||+++++.|.+++ .. ...+.+.| +|++|+|||||++.+++..... ..+. .++|+......+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999988 42 24567777 9999999999999999876542 1122 35677766777888
Q ss_pred HHHHHHHHHhCCCCC--CCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--------cccccCCCC---CCCC--CCc
Q 038205 189 NVQSELVKSLGWALT--EKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--------DLETIGIPV---GDRD--NCC 253 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--------~~~~l~~~l---~~~~--~gs 253 (375)
.++..++..++.... ..+.......+...+. -.+++++|||||++... .+..+...+ +..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLY-VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH-HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 999999999876433 2233444455555222 12679999999997632 222221111 1112 345
Q ss_pred EEEEEeCChhHHhhh--------CC-CCcccCCCCChHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHcC------Cchh
Q 038205 254 KILLTTRLQQVCYRM--------GC-DPRIKLDALDQAEGLDLLRKHAGI-DVADKTMTDVSKRVADECK------GLPL 317 (375)
Q Consensus 254 ~IivTTr~~~v~~~~--------~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~------glPl 317 (375)
.+|+||+...+...+ .. ...+.+.+|+.++++++|...+.. .....-..+....|++.|+ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 688888765432111 11 123899999999999999865421 0011122567889999999 9997
Q ss_pred HHHHHHHHh-c-----C---CCHHHHHHHHHHh
Q 038205 318 AIKAVGSAL-R-----L---RTADEWNVALDKL 341 (375)
Q Consensus 318 ai~~i~~~L-~-----~---~~~~~w~~~l~~l 341 (375)
.+..+.... . . -+.+.+..++...
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 665543321 1 1 1455666666544
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.53 E-value=2.4e-14 Score=109.87 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHH
Q 038205 7 IASKLGELLVDATIKQARYLFCFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAIVVEKDVEKWLADVVKEMADVRT 86 (375)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~~~Wl~~l~~~~~d~ed 86 (375)
+++.++++|.+.+.+++.. +.++++++++|+++|..|+++|.+|+.+.. ...++.++.|+++||+++||+||
T Consensus 2 ~v~~ll~KL~~ll~~E~~l-------~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~-~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKL-------HKGVKKNIEDLGKELESMNAALIKIGEVPR-EQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999988665 778889999999999999999999998521 12689999999999999999999
Q ss_pred HHHHHhhh
Q 038205 87 LKAKIDKK 94 (375)
Q Consensus 87 ~~d~~~~~ 94 (375)
++|+|.+.
T Consensus 74 ~iD~f~~~ 81 (115)
T 3qfl_A 74 VVDKFLVQ 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999866
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=1.6e-13 Score=119.93 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=119.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++||+..++.|..++..+. .+.+.|+|++|+||||||+.+++.......+.. ........ ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhc
Confidence 5566789999999999999987654 458999999999999999999887653221100 00000000 011110
Q ss_pred HhCCC---CCCCCHHHHHHHHHHHhhh-----cCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChhH-H
Q 038205 197 SLGWA---LTEKDEEDRADRLRLMFSE-----SKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQV-C 265 (375)
Q Consensus 197 ~l~~~---~~~~~~~~~~~~l~~~~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~v-~ 265 (375)
..... ..... ......+..++.. ..+++.+||+||++.. ..+..+...+.....+..+|+||+.... .
T Consensus 92 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcc-cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 00000 0011112222222 2457899999999753 3344443333333456788888876432 1
Q ss_pred h-hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHh
Q 038205 266 Y-RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSAL 326 (375)
Q Consensus 266 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L 326 (375)
. .......+.+.+++.++..+++...+.... ..-..+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 122335789999999999999998774221 11225667899999999999987765433
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.3e-12 Score=122.52 Aligned_cols=214 Identities=15% Similarity=0.134 Sum_probs=138.2
Q ss_pred CCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcC----C--ccEEEEEEecCCC-ChhHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN----I--FDKVGIATVSQDP-SIINV 190 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~~~ 190 (375)
..++||+++++.+..++.. +..+.+.|+|++|+||||||+.+++...... . ....+|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999877743 4467899999999999999999998764321 1 2346777766666 78888
Q ss_pred HHHHHHHh-CCCCC--CCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc-------ccccCCCCCCCCCCcEEEEEeC
Q 038205 191 QSELVKSL-GWALT--EKDEEDRADRLRLMFSESKSRKILVILDDVWKELD-------LETIGIPVGDRDNCCKILLTTR 260 (375)
Q Consensus 191 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~IivTTr 260 (375)
+..++..+ +.... ..+.......+.. .+..++.+|||||++.... +..+.... .+..+|+||+
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~---~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~ 172 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKN---GTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHH---HHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHH---HhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEEC
Confidence 88888887 32211 1222344444444 6666666999999975421 22222111 5678898888
Q ss_pred ChhH----Hhhh--CCCCcccCCCCChHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHcC---Cchh-HHHHHHHHh--c
Q 038205 261 LQQV----CYRM--GCDPRIKLDALDQAEGLDLLRKHAGI-DVADKTMTDVSKRVADECK---GLPL-AIKAVGSAL--R 327 (375)
Q Consensus 261 ~~~v----~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~i~~~L--~ 327 (375)
.... .... .....+.+.+++.++..++|...+.. .....-..+..+.+++.|+ |.|. ++..+-... .
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 6532 1111 11238899999999999999987531 0011112456678888888 8877 444433322 1
Q ss_pred ---CC-CHHHHHHHHHHhh
Q 038205 328 ---LR-TADEWNVALDKLQ 342 (375)
Q Consensus 328 ---~~-~~~~w~~~l~~l~ 342 (375)
.. +.+.+..+++...
T Consensus 253 ~~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh
Confidence 22 6778887776654
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.47 E-value=9.1e-13 Score=113.57 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=116.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
|..+..++|+++.++.+..++.....+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR------ 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH------
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH------
Confidence 55667889999999999999987766669999999999999999999876432111122333333222222111
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh---hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChhH-Hh-hhCC
Q 038205 198 LGWALTEKDEEDRADRLRLMFS---ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQV-CY-RMGC 270 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~~---~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~v-~~-~~~~ 270 (375)
..+..+.. ...+++.+||+||++.. .....+...+.....++.+|+||+.... .. ....
T Consensus 87 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 87 --------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp --------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred --------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 11111111 11357899999999764 2233332223223456788888876432 11 1222
Q ss_pred CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 271 DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 271 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
...+.+.+++.++..+++.+.+...... -..+..+.+++.++|.|..+..+
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3478999999999999999876421111 22466788999999999965443
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=6.3e-13 Score=124.57 Aligned_cols=198 Identities=18% Similarity=0.141 Sum_probs=127.1
Q ss_pred CCCccchHHHHHHHHHHHh----cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC-ccEEEEEEecCCCChhHHHHHHH
Q 038205 121 FSSFETTESACNQIIEALK----KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI-FDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
+..++||+.+++.|.+++. ....+.+.|+|++|+|||||++.+++....... -...+|+......+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999886 345678999999999999999999987754311 22456777666667777888887
Q ss_pred HHhCCCCCC--CCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc------cccccCCCCCC-CCCCcEEEEEeCChhHHh
Q 038205 196 KSLGWALTE--KDEEDRADRLRLMFSESKSRKILVILDDVWKEL------DLETIGIPVGD-RDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 196 ~~l~~~~~~--~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~IivTTr~~~v~~ 266 (375)
..++..... .+.......+...+.. .+++.+|||||++... .+..+...+.. ...+..+|+||+......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRD-YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHT-CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 777643322 2234444444442221 3458999999986531 22222111110 233567788888654322
Q ss_pred hhC-----C--CCcccCCCCChHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHcC---CchhHH
Q 038205 267 RMG-----C--DPRIKLDALDQAEGLDLLRKHAGI-DVADKTMTDVSKRVADECK---GLPLAI 319 (375)
Q Consensus 267 ~~~-----~--~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPlai 319 (375)
.+. . ...+.+.+++.++..+++...+.. .....-.....+.+++.++ |.|..+
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 211 1 147899999999999999986531 1111223566777888887 999844
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=2.7e-12 Score=120.33 Aligned_cols=217 Identities=16% Similarity=0.108 Sum_probs=137.5
Q ss_pred CCccchHHHHHHHHHHHhc----CCCcEEEEEcCCCchHHHHHHHHHhhhhhc----CCccEEEEEEecCCCChhHHHHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN----NIFDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~ 193 (375)
..++||+.+++.+..++.. ...+.+.|+|++|+||||+|+.+++..... +.-...+|++.....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998843 456789999999999999999999877432 11124567777777788889999
Q ss_pred HHHHhCCCCCC--CCHHHHHHHHHHHhhhc--CCCcEEEEEeCCCCccc----cccc---CCCCCCC--CCCcEEEEEeC
Q 038205 194 LVKSLGWALTE--KDEEDRADRLRLMFSES--KSRKILVILDDVWKELD----LETI---GIPVGDR--DNCCKILLTTR 260 (375)
Q Consensus 194 i~~~l~~~~~~--~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~~----~~~l---~~~l~~~--~~gs~IivTTr 260 (375)
++..++..... .+.......+.. .+ .+++.+|+|||++.... .+.+ ....... ..+..+|.||+
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~---~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVK---RLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHH---HHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHH---HHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99998754332 223444444444 44 45689999999985421 1111 1111111 34567787877
Q ss_pred ChhH--------HhhhCCCCcccCCCCChHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHcC---Cchh-HHHHHHHHhc
Q 038205 261 LQQV--------CYRMGCDPRIKLDALDQAEGLDLLRKHAGI-DVADKTMTDVSKRVADECK---GLPL-AIKAVGSALR 327 (375)
Q Consensus 261 ~~~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~i~~~L~ 327 (375)
.... ...+.. ..+.+.+++.++..+++...+.. .....-..+..+.+++.++ |.|- ++..+.....
T Consensus 176 ~~~~~~~l~~~l~~r~~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGE-VELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp CSTTSSSSCHHHHTTTTS-EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCC-eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 6522 221111 47899999999999999987531 0001111345677888887 9994 3333322221
Q ss_pred -------CC-CHHHHHHHHHHhh
Q 038205 328 -------LR-TADEWNVALDKLQ 342 (375)
Q Consensus 328 -------~~-~~~~w~~~l~~l~ 342 (375)
.. +.+.+..++....
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh
Confidence 12 6777777766553
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=3.3e-11 Score=113.11 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=131.4
Q ss_pred CCccchHHHHHHHHHHHhc----CCCc--EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 122 SSFETTESACNQIIEALKK----DSTK--MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
..++||+.+++.|..++.. .... .+.|+|++|+|||||++.+++....... ..++++..+...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999998854 3344 8999999999999999999988764311 2456777667777888999999
Q ss_pred HHhCCCCCC--CCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCC-C---CCcEEEEEeCChhHHhh
Q 038205 196 KSLGWALTE--KDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDR-D---NCCKILLTTRLQQVCYR 267 (375)
Q Consensus 196 ~~l~~~~~~--~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~-~---~gs~IivTTr~~~v~~~ 267 (375)
..++..... .+.......+...+.. .+++.+|||||++.. ..+..+...+... . .+..+|++|+...+...
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 988654322 2344455555553222 356899999999764 2222222222111 1 36788888887644322
Q ss_pred hC-------CCCcccCCCCChHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHc---------CCchhHHHH
Q 038205 268 MG-------CDPRIKLDALDQAEGLDLLRKHAGI-DVADKTMTDVSKRVADEC---------KGLPLAIKA 321 (375)
Q Consensus 268 ~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~glPlai~~ 321 (375)
+. ....+.+.+++.++..+++...+.. .....-..+..+.+++.+ +|.|-.+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 21 1136899999999999999887631 001122256778899999 788755433
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=6.7e-12 Score=114.77 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=116.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
|..+..++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++...........+++..+.....
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---------- 86 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI---------- 86 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH----------
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh----------
Confidence 5667789999999999999998876556999999999999999999987642211112333332222121
Q ss_pred hCCCCCCCCHHHHHHHHHHHh---hhc-CCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChhH-Hhh-hC
Q 038205 198 LGWALTEKDEEDRADRLRLMF---SES-KSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQV-CYR-MG 269 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~---~~l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~v-~~~-~~ 269 (375)
......+..+. ..+ .+++.++|+||++.. ..+..+...+.....++.+|+||+...- ... ..
T Consensus 87 ----------~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 87 ----------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp ----------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred ----------HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 11111222211 022 446899999999763 2333332223223356788888865322 111 22
Q ss_pred CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHHHHH
Q 038205 270 CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAVGSA 325 (375)
Q Consensus 270 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i~~~ 325 (375)
....+.+.+++.++..+++...+...... --.+..+.|++.|+|.|. ++..+...
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33578999999999999999876421111 124667889999999995 45554433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=5e-11 Score=109.09 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=113.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
|..+..++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+.....
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---------- 90 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI---------- 90 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH----------
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch----------
Confidence 6667889999999999999998877667999999999999999999987642211011222222211000
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh--hc-CCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChhH-Hhh-hCC
Q 038205 198 LGWALTEKDEEDRADRLRLMFS--ES-KSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQV-CYR-MGC 270 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~~--~l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~v-~~~-~~~ 270 (375)
......+..... .+ .+++.++|+||++.. .....+...+.....++++|+||....- ... ...
T Consensus 91 ----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 91 ----------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp ----------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred ----------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 000111111110 12 257889999999754 2333333223223456788888876432 111 112
Q ss_pred CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 271 DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 271 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
...+.+.+++.++...++...+...... --.+..+.|++.++|.|..+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHH
Confidence 2468999999999999998876422211 12466788999999999865443
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.12 E-value=6.7e-10 Score=101.20 Aligned_cols=185 Identities=11% Similarity=0.057 Sum_probs=113.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
|..+..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+.+.......-...+.+..+......
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------- 83 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--------- 83 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT---------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH---------
Confidence 55667889999999999999877765569999999999999999998876321110111223322211100
Q ss_pred hCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChh-HHh-hhCCCC
Q 038205 198 LGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQ-VCY-RMGCDP 272 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~-v~~-~~~~~~ 272 (375)
........+... ..+ .+++.++|+|+++.. .....+...+.....++.+|+||.... +.. ......
T Consensus 84 --------~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 --------VVRHKIKEFART-APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TSSHHHHHHHHS-CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHhc-CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 000111111110 012 256889999998754 233334334433345677888876543 211 122335
Q ss_pred cccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 273 RIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 273 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
.+.+.+++.++...++...+...... -..+..+.+++.++|.|..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 78999999999999998876432211 2245678888999999886543
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.08 E-value=9.6e-10 Score=102.50 Aligned_cols=197 Identities=16% Similarity=0.146 Sum_probs=112.8
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|++..++.|...+..+. .+.+.|+|++|+||||+|+.+.+.......+. ............+..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQ 84 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHT
T ss_pred CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhc
Confidence 5667789999999999999987654 46789999999999999999988765321110 000000001111111
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChh-HH-
Q 038205 197 SLGWA------LTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQ-VC- 265 (375)
Q Consensus 197 ~l~~~------~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~-v~- 265 (375)
..... ......+.....+..+.. ...+++.++|+||++.. .....+...+.....+..+|++|.... +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00000 000011112222222100 12456789999999753 233333322322234567777776432 11
Q ss_pred hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 266 YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 266 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
........+++.+++.++...++...+..... .-..+....|++.++|.|..+..+
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 11223367899999999999999876632111 112456788999999999977654
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=7.7e-09 Score=93.50 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=102.7
Q ss_pred ccchHHHHHHHHHHHh----cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC---Ccc--EEEEEEecCCCChhHHHHHH
Q 038205 124 FETTESACNQIIEALK----KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN---IFD--KVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~--~~~wv~~~~~~~~~~~~~~i 194 (375)
..+|++++++|...|. .+.+..+.|+|++|+|||++++.+++...... ... .++.++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 4589999999887763 45678999999999999999999999886432 111 34556656667888899999
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhc---CCCcEEEEEeCCCCcccccccCCCCC---CCCCCcEEEEEeCChh-----
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSES---KSRKILVILDDVWKELDLETIGIPVG---DRDNCCKILLTTRLQQ----- 263 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l---~~kr~LlVlDdv~~~~~~~~l~~~l~---~~~~gs~IivTTr~~~----- 263 (375)
++++....... ......+..++..+ .+++++++||+++...+-+.+...+. .......||.++...+
T Consensus 102 ~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 99985431111 11123344433343 45789999999976532111211111 0111223344443321
Q ss_pred H----HhhhCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 264 V----CYRMGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 264 v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
+ ...+. ...+.+.+++.+|..+++.+++.
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 14689999999999999998763
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=7.6e-09 Score=94.51 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=115.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..++|++..+..+..++.. .....+.|+|++|+|||++|+.+++.... . ..++..+.....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~--~---~~~~~~~~~~~~----- 77 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--N---LRVTSGPAIEKP----- 77 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC--C---EEEECTTTCCSH-----
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC--C---EEEEeccccCCh-----
Confidence 55677899999999888887742 34467899999999999999999887642 1 223332221111
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCCC--------C----------CCCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPVG--------D----------RDNC 252 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~g 252 (375)
.+....+. .-..+..+|+|||++... ....+...+. . ..++
T Consensus 78 ---------------~~l~~~l~----~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 78 ---------------GDLAAILA----NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---------------HHHHHHHT----TTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---------------HHHHHHHH----HhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11111111 111356689999997642 1111110000 0 0123
Q ss_pred cEEEEEeCChh-HHhh-hCC-CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHHhc--
Q 038205 253 CKILLTTRLQQ-VCYR-MGC-DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALR-- 327 (375)
Q Consensus 253 s~IivTTr~~~-v~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~L~-- 327 (375)
..+|.||.... +... ... ...+.+.+++.++...++...+..... .-..+..+.+++.++|.|-.+..+...+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 56777666432 1111 111 247899999999999999887743221 12256778899999999988876654442
Q ss_pred -----C-C-CHHHHHHHHHHh
Q 038205 328 -----L-R-TADEWNVALDKL 341 (375)
Q Consensus 328 -----~-~-~~~~w~~~l~~l 341 (375)
. . +.+....++..+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh
Confidence 1 1 455666666554
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.91 E-value=1.7e-09 Score=90.53 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=88.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC-----CccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN-----IFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..++||++.++.+.+.+.....+.+.|+|++|+|||++|+.+++...... .....+++..+. +
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-- 89 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L-- 89 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H--
T ss_pred hccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H--
Confidence 455678999999999999999887778899999999999999999998765321 012233333211 0
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhc--CCCcEEEEEeCCCCcc---------c-ccccCCCCCCCCCCcEEEEEeC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSES--KSRKILVILDDVWKEL---------D-LETIGIPVGDRDNCCKILLTTR 260 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~---------~-~~~l~~~l~~~~~gs~IivTTr 260 (375)
. . ...........+..++..+ .+++.+|+|||++... . ...+...+ . ..+..+|.||.
T Consensus 90 --~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~-~~~~~~i~~~~ 159 (195)
T 1jbk_A 90 --V---A---GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-A-RGELHCVGATT 159 (195)
T ss_dssp --H---T---TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-H-TTSCCEEEEEC
T ss_pred --h---c---cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-c-cCCeEEEEeCC
Confidence 0 0 0011122222333322222 4578899999996531 1 11111111 1 22456777776
Q ss_pred ChhHHh-------hhCCCCcccCCCCChHHHHHHH
Q 038205 261 LQQVCY-------RMGCDPRIKLDALDQAEGLDLL 288 (375)
Q Consensus 261 ~~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf 288 (375)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 554221 1122235788888887776543
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.89 E-value=1.9e-08 Score=95.75 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=107.6
Q ss_pred CCCCCCccchHHHH---HHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESAC---NQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+..++|.+..+ ..|...+..+..+.+.|+|++|+||||+|+.+.+.... . ++.++........++.+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~-----f~~l~a~~~~~~~ir~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--D-----VERISAVTSGVKEIREA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--E-----EEEEETTTCCHHHHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--C-----eEEEEeccCCHHHHHHH
Confidence 67778899999988 78888888887788999999999999999999987642 1 22222221111122222
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEE-EeCChhH---Hhhh
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILL-TTRLQQV---CYRM 268 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTr~~~v---~~~~ 268 (375)
+.. .... ...+++.+|+||+++.. ...+.+...+.. ....+|. ||.+... ....
T Consensus 95 ~~~----------------a~~~--~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 95 IER----------------ARQN--RNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHH----------------HHHH--HHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred HHH----------------HHHh--hhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 111 1110 22467889999999754 223333222222 1234444 4444321 1222
Q ss_pred CCCCcccCCCCChHHHHHHHHHHcCCC------CCCCCchHHHHHHHHHcCCchhHHH
Q 038205 269 GCDPRIKLDALDQAEGLDLLRKHAGID------VADKTMTDVSKRVADECKGLPLAIK 320 (375)
Q Consensus 269 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPlai~ 320 (375)
....++.+.+++.++...++.+.+... ....-..+..+.|++.++|.+-.+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 333578899999999999998876421 1111225667888888998877554
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.89 E-value=3.2e-09 Score=92.42 Aligned_cols=174 Identities=16% Similarity=0.116 Sum_probs=103.9
Q ss_pred CCCCCccch---HHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 119 RFFSSFETT---ESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 119 ~~~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
..+..|++. +..+..+..+...+..+.+.|+|++|+||||||+.+++..... ...+.++..+..... +
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C-
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H-
Confidence 455667753 4667777777766667899999999999999999999887643 223455554321100 0
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----ccccCCCCCC-CCCC-cEEEEEeCCh-------
Q 038205 196 KSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD----LETIGIPVGD-RDNC-CKILLTTRLQ------- 262 (375)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~IivTTr~~------- 262 (375)
.+.+..+ .++.+||+||++.... ...+...+.. ...+ .++|+||+..
T Consensus 96 -------------------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 96 -------------------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp -------------------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred -------------------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0000012 3456999999875421 1112111110 0112 2477777632
Q ss_pred --hHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHH
Q 038205 263 --QVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 263 --~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i 322 (375)
.+...+.....+.+.+++.++..+++...+.... ..-..+..+.+++.++|.+-.+..+
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 2222222225789999999999999998764211 1122567788999999988766543
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=5.1e-09 Score=96.77 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=111.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCcc-EEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFD-KVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+.+.......+. ....+..+..... ..+.+...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHH
Confidence 666788899999999999998877555599999999999999999988764211111 1222332222222 22222221
Q ss_pred HhC-CCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCCCCCCCCcEEEEEeCChh-HHhh-hCCC
Q 038205 197 SLG-WALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPVGDRDNCCKILLTTRLQQ-VCYR-MGCD 271 (375)
Q Consensus 197 ~l~-~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivTTr~~~-v~~~-~~~~ 271 (375)
.+. ......... .... .-.+++-+|++|+++... ....+...+.......++|++|.... +... ....
T Consensus 112 ~~~~~~~~~~~~~----~~~~---~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 112 NFARLTVSKPSKH----DLEN---YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHSCCCCCCTT----HHHH---SCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHhhhcccccchh----hccc---CCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 110 000000000 0001 223456799999986532 22222222222233467777765432 1111 1112
Q ss_pred CcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 272 PRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 272 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
..+.+.+++.++....+...+...... --.+..+.|++.++|.|-.+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 468899999999999998876422211 2256778999999999986543
No 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.84 E-value=8.2e-08 Score=85.42 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=106.5
Q ss_pred CccchHHHHHHHHH-------HHh---cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 123 SFETTESACNQIIE-------ALK---KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 123 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
.++|....++++.. .+. ....+.+.|+|++|+|||++|+.+++.... ..+ .+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~~~-~i~~~~~-------- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----PFI-KICSPDK-------- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----SEE-EEECGGG--------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----CEE-EEeCHHH--------
Confidence 34555555555444 333 344678999999999999999999987532 111 1222210
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc---------------ccccccCCCCCCCCCCcEEE
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE---------------LDLETIGIPVGDRDNCCKIL 256 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~---------------~~~~~l~~~l~~~~~gs~Ii 256 (375)
+ ...........+..++. ....+..+|+|||++.. ..+..+............||
T Consensus 101 -----~----~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 -----M----IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp -----C----TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred -----h----cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0 00111111122222222 33467889999997542 11112211111122334567
Q ss_pred EEeCChhHHhh---hCC-CCcccCCCCCh-HHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC------chhHHHHHHHH
Q 038205 257 LTTRLQQVCYR---MGC-DPRIKLDALDQ-AEGLDLLRKHAGIDVADKTMTDVSKRVADECKG------LPLAIKAVGSA 325 (375)
Q Consensus 257 vTTr~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g------lPlai~~i~~~ 325 (375)
.||........ .+. ...+.+.+++. ++...++.+.... .......|++.+.| ++-++..+-..
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~------~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNF------KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCS------CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCC------CHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 77776654332 122 25678888988 7777777654211 14567788888888 44444444433
Q ss_pred hcCCCHHHHHHHHHHhhhcc
Q 038205 326 LRLRTADEWNVALDKLQNAK 345 (375)
Q Consensus 326 L~~~~~~~w~~~l~~l~~~~ 345 (375)
........+..++..+....
T Consensus 246 ~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 246 LQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp TTSCGGGHHHHHHHHHHHTS
T ss_pred hhhchHHHHHHHHHHHHHcC
Confidence 33335567888887776653
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.9e-08 Score=97.87 Aligned_cols=193 Identities=15% Similarity=0.092 Sum_probs=108.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT 180 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 180 (375)
|..+..++|++..++.|..++.. +..+.+.|+|++|+||||+|+.+++... + .++.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 66678899999999999999864 1347899999999999999999998773 2 223333
Q ss_pred ecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc-----ccccCCCCCCCCCCcEE
Q 038205 181 VSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD-----LETIGIPVGDRDNCCKI 255 (375)
Q Consensus 181 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~I 255 (375)
.+..... ..+...+.......... ........ .....+++.+|++|+++.... +..+...+.. .+..|
T Consensus 110 ~s~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~-~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 110 ASDVRSK-TLLNAGVKNALDNMSVV---GYFKHNEE-AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp TTSCCCH-HHHHHTGGGGTTBCCST---TTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCE
T ss_pred CCCcchH-HHHHHHHHHHhccccHH---HHHhhhhh-hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCE
Confidence 3333222 22222222211100000 00000000 001235788999999965311 1222111111 23346
Q ss_pred EEEeCChh---HHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC-chhHHHHHH
Q 038205 256 LLTTRLQQ---VCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKG-LPLAIKAVG 323 (375)
Q Consensus 256 ivTTr~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~i~ 323 (375)
|+++.... +.........+.+.+++.++..+++...+....... -.+....|++.++| ++.++..+.
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i-~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL-DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC-CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65554322 222222335689999999999999887664211111 12456788999998 555565553
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=3.3e-08 Score=88.54 Aligned_cols=202 Identities=19% Similarity=0.193 Sum_probs=113.8
Q ss_pred CCCCCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 119 RFFSSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 119 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
..+..++|.++.++.|.+.+.. .....+.|+|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3456788999999988887632 346789999999999999999999876421 1222221110
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCC--
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVG-- 247 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~-- 247 (375)
..............+.. .....+.+|+|||++... .+..+...+.
T Consensus 89 --------------~~~~~~~~~~~~~~~~~---~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 89 --------------KKFIGEGASLVKDIFKL---AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp --------------CCSTTHHHHHHHHHHHH---HHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred --------------HhccchHHHHHHHHHHH---HHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 00000011111122222 334467899999986420 1111111111
Q ss_pred CCCCCcEEEEEeCChhHHh--hh---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC-chhHHHH
Q 038205 248 DRDNCCKILLTTRLQQVCY--RM---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKG-LPLAIKA 321 (375)
Q Consensus 248 ~~~~gs~IivTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~ 321 (375)
....+..||.||....... .. .....+.+...+.++..++|...+.......+ .....++..+.| .|-.+..
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHH
Confidence 1223567777887543221 11 12246889999999999999988753221111 124667777777 4544443
Q ss_pred HHH------HhcC--C-CHHHHHHHHHHhhhc
Q 038205 322 VGS------ALRL--R-TADEWNVALDKLQNA 344 (375)
Q Consensus 322 i~~------~L~~--~-~~~~w~~~l~~l~~~ 344 (375)
+.. ..+. . +.+....++..+...
T Consensus 230 l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 230 ICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 321 1122 2 677788877776554
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=1.6e-08 Score=93.60 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=106.0
Q ss_pred CCCCCCccchHHHHHHHHHHH-hcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEE---------------
Q 038205 118 PRFFSSFETTESACNQIIEAL-KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVG--------------- 177 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~--------------- 177 (375)
|..+..++|++..++.+..++ ..+..+.+.|+|++|+||||+++.+.+...... .++...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 566778899999999999988 665544599999999999999999988532111 000000
Q ss_pred ---EEEecCC-CCh--hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCCCCC
Q 038205 178 ---IATVSQD-PSI--INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPVGDR 249 (375)
Q Consensus 178 ---wv~~~~~-~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~ 249 (375)
++.+... ... ....++++..+.....-. .. + .++.+.+++-++|||++.... ....+...+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~---~--~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD---FQ---D--SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcccc---cc---c--cccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111100 000 001222222221100000 00 0 000123467799999997642 122222222212
Q ss_pred CCCcEEEEEeCChh-HHh-hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCc-hHHHHHHHHHcCCchhHHHHH
Q 038205 250 DNCCKILLTTRLQQ-VCY-RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTM-TDVSKRVADECKGLPLAIKAV 322 (375)
Q Consensus 250 ~~gs~IivTTr~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~-~~~~~~i~~~~~glPlai~~i 322 (375)
..++.+|++|++.. +.. .......+++.+++.++....+.+.+...... -- .+..+.|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 34578888887632 211 12233678999999999999998876421111 11 355678889999988755433
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.77 E-value=1.5e-07 Score=83.05 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=97.3
Q ss_pred CCCCccchHHHHHHHHHHH---hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEAL---KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..++|.+..++.|.+++ .. ...+.+.|+|++|+|||++|+.+++.... . .+.+..+.-.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~~~~~~~~~- 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--P---FLAMAGAEFVE- 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--C---EEEEETTTTSS-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C---EEEechHHHHh-
Confidence 4566788888777776554 21 23456889999999999999999987642 1 22233222110
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-----------------cccccCCCCCC--
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-----------------DLETIGIPVGD-- 248 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~-- 248 (375)
.............+.. .....+.+|+|||++... .+..+...+..
T Consensus 78 -------------~~~~~~~~~~~~~~~~---a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 -------------VIGGLGAARVRSLFKE---ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp -------------SSTTHHHHHHHHHHHH---HHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred -------------hccChhHHHHHHHHHH---HHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0000111112222222 333467899999997531 01111111111
Q ss_pred CCCCcEEEEEeCChhHHh-h-hC---CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHH
Q 038205 249 RDNCCKILLTTRLQQVCY-R-MG---CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAV 322 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i 322 (375)
...+..||.||....... . .. ....+.+...+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 123456666776543211 1 11 225677889999999999988764222122222234778888888754 44433
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.75 E-value=5.9e-08 Score=92.42 Aligned_cols=205 Identities=19% Similarity=0.179 Sum_probs=115.9
Q ss_pred CCCCcc-c--hHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 120 FFSSFE-T--TESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 120 ~~~~~~-g--r~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
.+..|+ | .......+......+. ...+.|+|++|+||||||+.+++.......-..+++++.. .+..++.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHH
Confidence 345565 4 2334445555544443 6789999999999999999999887543111223444332 2333444
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----ccccCCCCCC-CCCCcEEEEEeCCh--------
Q 038205 196 KSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD----LETIGIPVGD-RDNCCKILLTTRLQ-------- 262 (375)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~IivTTr~~-------- 262 (375)
..+... .. ..+.. .+..+..+|+|||++.... .+.+...+.. ...|..||+||++.
T Consensus 177 ~~~~~~----~~----~~~~~---~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 177 DSMKEG----KL----NEFRE---KYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHTT----CH----HHHHH---HHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHcc----cH----HHHHH---HhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 333211 11 11222 3333677999999965321 1222111111 13467888888762
Q ss_pred -hHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHH------hcCC--CHHH
Q 038205 263 -QVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSA------LRLR--TADE 333 (375)
Q Consensus 263 -~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~------L~~~--~~~~ 333 (375)
.+...+.....+.+.+++.++...++.+.+...... --.++...|++.++|.+-.+.-+-.. +..+ +.+.
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~ 324 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKE 324 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 233334444678999999999999998876411101 11345677889999988655322111 1222 6777
Q ss_pred HHHHHHHhh
Q 038205 334 WNVALDKLQ 342 (375)
Q Consensus 334 w~~~l~~l~ 342 (375)
++.++..+.
T Consensus 325 ~~~~l~~~~ 333 (440)
T 2z4s_A 325 AILLLKDFI 333 (440)
T ss_dssp HHHHTSTTT
T ss_pred HHHHHHHHh
Confidence 777776543
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.75 E-value=3.7e-08 Score=89.32 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=85.2
Q ss_pred ccchHHHHHHHHHHHh---------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 124 FETTESACNQIIEALK---------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG----
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH----
Confidence 5677777777765542 234557999999999999999999888765333222223333211
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc-----------ccccccCCCCCCCCCCcEEEE
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKE-----------LDLETIGIPVGDRDNCCKILL 257 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~Iiv 257 (375)
.+...............+.. . +..+|+||+++.. .....+...+.....+..+|.
T Consensus 109 --------~l~~~~~g~~~~~~~~~~~~----~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 --------DLVGQYIGHTAPKTKEVLKR----A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp --------GTCCSSTTCHHHHHHHHHHH----H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred --------HhhhhcccccHHHHHHHHHh----c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 01111111111222222222 2 3459999999732 122223222323344567888
Q ss_pred EeCChhH----------HhhhCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 258 TTRLQQV----------CYRMGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 258 TTr~~~v----------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
||..... ...+ ...+.+.+++.++...++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 8764322 2221 25789999999999999988764
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.71 E-value=5.5e-08 Score=88.82 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=102.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
|..+..++|++..+..|..++..+. ...+.+.|++|+|||++|+.+.+.... ..+.++.+. .. ...++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~-~~-~~~i~~~-- 92 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD-CK-IDFVRGP-- 92 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT-CC-HHHHHTH--
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc-cC-HHHHHHH--
Confidence 6677889999999999999998665 467788888999999999999887641 233333322 11 2222221
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhh--hcCCCcEEEEEeCCCCcc---cccccCCCCCCCCCCcEEEEEeCChh-----HHh
Q 038205 197 SLGWALTEKDEEDRADRLRLMFS--ESKSRKILVILDDVWKEL---DLETIGIPVGDRDNCCKILLTTRLQQ-----VCY 266 (375)
Q Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~IivTTr~~~-----v~~ 266 (375)
+..+.. ...+++.+|++||++... ....+...+.....++.+|+||.... +..
T Consensus 93 -----------------~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 93 -----------------LTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp -----------------HHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred -----------------HHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 111111 223478899999998653 22222222221223467888877543 222
Q ss_pred hhCCCCcccCCCCChHHHHHHHHH-------HcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 267 RMGCDPRIKLDALDQAEGLDLLRK-------HAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 267 ~~~~~~~~~l~~L~~~e~~~Lf~~-------~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
.+ ..+.+.+++.++-.+++.. .+........-.+....|++.++|.+-.+
T Consensus 156 R~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 156 RC---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HS---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred hC---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHH
Confidence 22 4689999998885443322 22211111111267788899998877643
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.71 E-value=8.9e-07 Score=80.70 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=101.5
Q ss_pred CCCCccchHHHHHHHHHHHh------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEALK------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..+.|.++.++.|.+.+. ....+-+.|+|++|+|||+||+.+++.... . ..+.+..+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHH--
Confidence 45667788888888877652 112468999999999999999999987621 1 12223222111
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc-------------ccccCCC---CCCCCC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD-------------LETIGIP---VGDRDN 251 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 251 (375)
..............+.. ....++.+|+||+++.... ...+... +.....
T Consensus 84 ------------~~~~g~~~~~~~~lf~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 ------------SKWLGESEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ------------CSSCCSCHHHHHHHHHH---HHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ------------hhhhhHHHHHHHHHHHH---HHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 01111122222222222 3345788999999975310 0111111 111234
Q ss_pred CcEEEEEeCChh-----HHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch-hHHHHH
Q 038205 252 CCKILLTTRLQQ-----VCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP-LAIKAV 322 (375)
Q Consensus 252 gs~IivTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~i 322 (375)
+..||.||.... +.. .....+.+...+.++-.+++..++....... .......|++.+.|.. -.|..+
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 455666665432 222 2335678888899999999998775322111 2456688999998874 345444
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=1.2e-07 Score=87.19 Aligned_cols=181 Identities=11% Similarity=0.064 Sum_probs=105.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS 197 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 197 (375)
|..+..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++.......-..+.-+..+....
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~----------- 89 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG----------- 89 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS-----------
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc-----------
Confidence 666777889999999999888877655599999999999999999998765321101112222221111
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh---hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCChh-HHh-hhCC
Q 038205 198 LGWALTEKDEEDRADRLRLMFS---ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQQ-VCY-RMGC 270 (375)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~~~---~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~~-v~~-~~~~ 270 (375)
.......+..+.+ ...+.+-++|+|+++.. .....+...+......+.+|++|.... +.. ....
T Consensus 90 ---------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 90 ---------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp ---------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred ---------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 1122222222111 12245779999998643 222222222211223466777765432 111 1122
Q ss_pred CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHH
Q 038205 271 DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAI 319 (375)
Q Consensus 271 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 319 (375)
...+.+.+++.++..+.+...+...... --....+.+++.++|.+--+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 2467899999999988888766321111 11456677888888877643
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.68 E-value=3.9e-07 Score=83.57 Aligned_cols=171 Identities=11% Similarity=0.022 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHhcCC-CcEEEEEcCCCchHHHHHHHHHhhhhhcC--------------------CccEEEEEEecCCC
Q 038205 127 TESACNQIIEALKKDS-TKMVGLHGLGGVGKTTLAKFVGNQLRQNN--------------------IFDKVGIATVSQDP 185 (375)
Q Consensus 127 r~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~~~~ 185 (375)
.++..+.+...+..++ .+.+.++|++|+|||++|+.+.+...-.. +++ ..++.....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~- 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG- 84 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT-
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc-
Confidence 4566777888777665 45799999999999999999988764221 111 122221100
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
......++..+.+..+.. ...+++-++|+|+++.. .....+...+.....++.+|++|.+.
T Consensus 85 ----------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 85 ----------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp ----------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred ----------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 001112222222221100 12356789999999754 22233323333333456777777654
Q ss_pred h-HHhh-hCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 263 Q-VCYR-MGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 263 ~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
+ +... .+....+.+.+++.++..+.+.+.... ..+....+++.++|.|..+..
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~------~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM------SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHH
Confidence 2 3222 233357899999999999999887611 145567899999999976643
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.68 E-value=7.2e-07 Score=81.87 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=103.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..++|++..++.+..++.. .....+.|+|++|+|||++|+.+.+.... .| +.+..+...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--~~---~~~~~~~~~------- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--NI---KTTAAPMIE------- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC--CE---EEEEGGGCC-------
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--Ce---EEecchhcc-------
Confidence 45677899999999999888753 34567899999999999999999877542 12 222222111
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCCC------------------CCCCCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIPV------------------GDRDNC 252 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~g 252 (375)
........+. . ..+..+|+||+++... ....+...+ ....++
T Consensus 93 -------------~~~~~~~~~~----~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -------------KSGDLAAILT----N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -------------SHHHHHHHHH----T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -------------chhHHHHHHH----h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1111111111 1 2356789999987531 111110000 001123
Q ss_pred cEEEEEeCChhH-Hh-hhC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 253 CKILLTTRLQQV-CY-RMG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 253 s~IivTTr~~~v-~~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
..+|.+|..... .. ... ....+.+.+++.++...++.+.+.... ..-..+..+.|++.+.|.|-.+..
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHH
Confidence 567766665322 11 111 225789999999999999988764221 112256678888999999965543
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.65 E-value=5.7e-07 Score=83.28 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=101.7
Q ss_pred CCCCCCccchHHHHHHHHHHHh------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 118 PRFFSSFETTESACNQIIEALK------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
+..+..++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.+..+.-.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~ 154 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLT 154 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhh
Confidence 3445678899999988888763 234678999999999999999999887641 12333332211
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc-------------cccccCCCCC----
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL-------------DLETIGIPVG---- 247 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~---- 247 (375)
. .... .....+..++. ....++.+|+||+++... ....+...+.
T Consensus 155 ~--------------~~~g----~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 155 S--------------KWVG----EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp C--------------SSTT----HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred c--------------cccc----hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 1 0000 11111122111 223567899999984320 0111111111
Q ss_pred CCCCCcEEEEEeCChhH-Hhh-h-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC-chhHHHHH
Q 038205 248 DRDNCCKILLTTRLQQV-CYR-M-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKG-LPLAIKAV 322 (375)
Q Consensus 248 ~~~~gs~IivTTr~~~v-~~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~i 322 (375)
....+..||.||..... ... . .....+.+...+.++..+++...+...... -.......|++.+.| .|-.+..+
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 11234556667764321 111 1 222467788889999999988776422111 124567888999988 45555554
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.64 E-value=2.4e-07 Score=86.07 Aligned_cols=212 Identities=11% Similarity=0.092 Sum_probs=112.0
Q ss_pred CCCccchHHHHHH---HHHHHhcCC--CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe----cCCCChhHHH
Q 038205 121 FSSFETTESACNQ---IIEALKKDS--TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV----SQDPSIINVQ 191 (375)
Q Consensus 121 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~~~~ 191 (375)
+..++|++..... +...+..+. .+.+.|+|++|+|||++|+.+.+.......| +.+.. +........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 6789999988766 445555443 3589999999999999999999987632222 11111 1122333333
Q ss_pred HHHHHHh-CC---------------------------CCCC---CCHHHHHHHHHHHhhh--cCCC----cEEEEEeCCC
Q 038205 192 SELVKSL-GW---------------------------ALTE---KDEEDRADRLRLMFSE--SKSR----KILVILDDVW 234 (375)
Q Consensus 192 ~~i~~~l-~~---------------------------~~~~---~~~~~~~~~l~~~~~~--l~~k----r~LlVlDdv~ 234 (375)
.+.+... +. .... .........+...... ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333321 00 0000 0012222223221111 1122 4699999997
Q ss_pred Cc--ccccccCCCCCCCCCCcEEEEEeCC-----------------hhHHhhhCCCCcccCCCCChHHHHHHHHHHcCCC
Q 038205 235 KE--LDLETIGIPVGDRDNCCKILLTTRL-----------------QQVCYRMGCDPRIKLDALDQAEGLDLLRKHAGID 295 (375)
Q Consensus 235 ~~--~~~~~l~~~l~~~~~gs~IivTTr~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 295 (375)
.. .....+...+..... ..++++|.. +.+.. ....+.+.+++.++..+++...+...
T Consensus 200 ~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHc
Confidence 54 222222222222212 234444431 12222 22457999999999999999876422
Q ss_pred CCCCCchHHHHHHHHHcC-CchhHHHH-HHHHh-----cC--C-CHHHHHHHHHH
Q 038205 296 VADKTMTDVSKRVADECK-GLPLAIKA-VGSAL-----RL--R-TADEWNVALDK 340 (375)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~-glPlai~~-i~~~L-----~~--~-~~~~w~~~l~~ 340 (375)
. ..--.+..+.|++.+. |.|-.+.. +.... +. . +.+..+.++..
T Consensus 276 ~-~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 276 D-VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp T-CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1 1222567788999997 77765433 22221 12 2 56677776664
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.64 E-value=6.7e-07 Score=81.55 Aligned_cols=178 Identities=18% Similarity=0.188 Sum_probs=101.9
Q ss_pred CCCCCccchHHHHHHHHHHHh----------c--CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 119 RFFSSFETTESACNQIIEALK----------K--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 119 ~~~~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
..+..++|.+..++.|.+.+. . ...+-+.|+|++|+|||+||+.+++.... .| +.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--~~---~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--TF---FSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--EE---EEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--CE---EEEchH----
Confidence 345678899999988888761 1 12457999999999999999999987642 12 222211
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCccc-------------ccccCC---CCCCC
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKELD-------------LETIGI---PVGDR 249 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~~-------------~~~l~~---~l~~~ 249 (375)
.+ ... ... .....+..++. ....++.+|+||+++.... ...+.. .+...
T Consensus 86 --~l----~~~----~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 86 --DL----VSK----WMG----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp --HH----HTT----TGG----GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred --HH----hhc----ccc----hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 11 100 001 11112222221 3334678999999874311 111111 11122
Q ss_pred CCCcEEEEEeCChhH-----HhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc-hhHHHHH
Q 038205 250 DNCCKILLTTRLQQV-----CYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL-PLAIKAV 322 (375)
Q Consensus 250 ~~gs~IivTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~i 322 (375)
..+..||.||..... .. .....+.+...+.++-.++|..++...... .-......|++.+.|. +-.|..+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345566667765322 22 223467788899999999999887643211 1245567888888874 4444433
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.60 E-value=2e-06 Score=81.92 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=102.4
Q ss_pred CCCCCCccchHHHHHHHHHHHh------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 118 PRFFSSFETTESACNQIIEALK------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
+..+..++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... . .++.++...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-~-----~~~~v~~~~ 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S-----TFFSISSSD 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-S-----EEEEECCC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-C-----CEEEEeHHH
Confidence 3445678899998888887762 123578999999999999999999987621 1 123332211
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-------------cccccCCCCCC---C
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-------------DLETIGIPVGD---R 249 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~---~ 249 (375)
+.... .+. ... .....+.. ....++.+|+||+++... ....+...+.. .
T Consensus 204 ----l~~~~---~g~--~~~---~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 204 ----LVSKW---LGE--SEK---LVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp -----------------CCC---THHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred ----HHhhh---cch--HHH---HHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 11110 110 011 11122222 223578899999997531 01112222221 2
Q ss_pred CCCcEEEEEeCChhHHh--hh-CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc-hhHHHHH
Q 038205 250 DNCCKILLTTRLQQVCY--RM-GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL-PLAIKAV 322 (375)
Q Consensus 250 ~~gs~IivTTr~~~v~~--~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~i 322 (375)
..+..||.||....... .. .....+.+...+.++...+|..++....... -......|++.+.|. +-.|..+
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 34566777776542211 11 2224677888888999999988875322111 135567889999885 4444443
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.57 E-value=7.7e-07 Score=82.27 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=100.3
Q ss_pred CCCCCccchHHHHHHHHHHHhc------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 119 RFFSSFETTESACNQIIEALKK------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 119 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
..+..++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.... .| +.+..+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--~~---~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--TF---FSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC--EE---EEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEeeHH----
Confidence 3456678888888888876521 12356899999999999999999998742 11 222211
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc-------------ccccCCCC---CCCC
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD-------------LETIGIPV---GDRD 250 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~l---~~~~ 250 (375)
.+ ... ............+.. ....++.+|+||+++.... ...+...+ ....
T Consensus 119 --~l----~~~----~~g~~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 --DL----VSK----WMGESEKLVKQLFAM---ARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp --HH----HSC----C---CHHHHHHHHHH---HHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred --HH----hhh----hcchHHHHHHHHHHH---HHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 11 110 111112222222222 3345789999999874310 11111111 1123
Q ss_pred CCcEEEEEeCChh-----HHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc-hhHHHHH
Q 038205 251 NCCKILLTTRLQQ-----VCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL-PLAIKAV 322 (375)
Q Consensus 251 ~gs~IivTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~i 322 (375)
.+..||.||.... +.. .....+.+...+.++-.++|..++....... -......|++.+.|. |-.|..+
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456666776442 222 2335678888899999999998875332111 144567889999884 4344433
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.57 E-value=1.4e-06 Score=81.58 Aligned_cols=182 Identities=16% Similarity=0.087 Sum_probs=100.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhc------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 118 PRFFSSFETTESACNQIIEALKK------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
+..+..++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.... ..+.+..+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 44567789999999999887621 23468999999999999999999887542 12222222111
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-------------cccccCCCC---CC-
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-------------DLETIGIPV---GD- 248 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l---~~- 248 (375)
. . ............+.. .....+.+|+||+++... ....+...+ ..
T Consensus 186 ~--~------------~~g~~~~~~~~~~~~---a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 186 S--K------------YVGEGEKLVRALFAV---ARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp --------------------CHHHHHHHHHH---HHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred c--c------------ccchHHHHHHHHHHH---HHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 0 000111111122222 223456899999996430 000111001 11
Q ss_pred CCCCcEEEEEeCChhHH-h-hhC-CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHHH
Q 038205 249 RDNCCKILLTTRLQQVC-Y-RMG-CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKAV 322 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~-~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~i 322 (375)
......||.||...... . ... ....+.+...+.++...++...+..... .-.......|++.+.|..- ++..+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12234566666543221 1 111 2246788889999999999888753321 1224567889999988654 55444
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.56 E-value=1.9e-06 Score=77.51 Aligned_cols=180 Identities=17% Similarity=0.111 Sum_probs=101.1
Q ss_pred CCCCCCccchHHHHHHHHHHHhc------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 118 PRFFSSFETTESACNQIIEALKK------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
+..+..++|.+..++.|.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~ 91 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLT 91 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHh
Confidence 34556788999999988887632 23578999999999999999999987642 12223322211
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc-------------ccccC---CCCCC-
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD-------------LETIG---IPVGD- 248 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-------------~~~l~---~~l~~- 248 (375)
. .............+.. ....++.+|+||+++.... ...+. ..++.
T Consensus 92 ~--------------~~~~~~~~~~~~~~~~---~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 92 S--------------KYVGDGEKLVRALFAV---ARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp S--------------SSCSCHHHHHHHHHHH---HHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred h--------------cccchHHHHHHHHHHH---HHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 0 0011111111122222 3345778999999864310 00010 01111
Q ss_pred -CCCCcEEEEEeCChh-----HHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh-HHHH
Q 038205 249 -RDNCCKILLTTRLQQ-----VCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL-AIKA 321 (375)
Q Consensus 249 -~~~gs~IivTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~ 321 (375)
.+.+..||.||.... +... ....+.+...+.++...++...+.... ..-.......+++.+.|.+- ++..
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 113456666776532 2222 224567777788888888887664221 11124566789999999876 5544
Q ss_pred H
Q 038205 322 V 322 (375)
Q Consensus 322 i 322 (375)
+
T Consensus 232 l 232 (297)
T 3b9p_A 232 L 232 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.55 E-value=2.3e-07 Score=77.07 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
|..+..++|++.++..+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4566789999999999999998877778899999999999999999887643
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.49 E-value=1.6e-06 Score=78.32 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=99.0
Q ss_pred CCCCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 120 FFSSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
.+..++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.... . ++.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~--~-----~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--N-----FISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--E-----EEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC--C-----EEEEE----
Confidence 355678888888888776532 34578999999999999999999987642 1 22222
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCC--C
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVG--D 248 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~ 248 (375)
...+.... ++.. .......+.. .....+.+|+||+++... ....+...+. .
T Consensus 82 ~~~l~~~~---~g~~-----~~~~~~~f~~---a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 GPELLTMW---FGES-----EANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHHHH---HTTC-----TTHHHHHHHH---HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred hHHHHhhh---cCch-----HHHHHHHHHH---HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 22222221 1211 1122222333 334568999999997421 0111111111 1
Q ss_pred CCCCcEEEEEeCChhHHh--hhC---CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 249 RDNCCKILLTTRLQQVCY--RMG---CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
...+..||.||....... ... ....+.+...+.++-.+++..++.......+. ....++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 123567777777553321 122 22568899999999999998877532211111 124566677777654
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.3e-06 Score=75.31 Aligned_cols=198 Identities=20% Similarity=0.251 Sum_probs=109.7
Q ss_pred CCCccchHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 121 FSSFETTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
+....|-++.+++|.+.+. -..++-|.++||+|+|||.||+.+++..... | +.+..+.-.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~-- 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAELV-- 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhh--
Confidence 3455677777777766541 1235678999999999999999999987632 2 233322211
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc----------c------ccccCCCCC--C
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL----------D------LETIGIPVG--D 248 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~----------~------~~~l~~~l~--~ 248 (375)
..... +....++.++. +-...+++|++|+++... . +..+...+. .
T Consensus 220 ------------sk~vG----ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 220 ------------QKYIG----EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ------------CSSTT----HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ------------ccccc----hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 01111 11222222222 335578999999987431 0 111111111 1
Q ss_pred CCCCcEEEEEeCChhHH-----hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH-HHHH
Q 038205 249 RDNCCKILLTTRLQQVC-----YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA-IKAV 322 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~i 322 (375)
...+..||.||...+.. ........+.+...+.++-.++|+.+.......++.. ...|++.+.|+--| |..+
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCCHHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCCHHHHHHH
Confidence 23455667777654332 1123346788998899999999988775322222211 35677888876543 2111
Q ss_pred ---HHH--hcC-C---CHHHHHHHHHHhhh
Q 038205 323 ---GSA--LRL-R---TADEWNVALDKLQN 343 (375)
Q Consensus 323 ---~~~--L~~-~---~~~~w~~~l~~l~~ 343 (375)
|.+ ++. + +.+++..++++...
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 222 222 2 56777777766543
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.46 E-value=1.5e-06 Score=79.20 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=96.5
Q ss_pred CCCcc-c--hHHHHHHHHHHHhcC--CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 121 FSSFE-T--TESACNQIIEALKKD--STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 121 ~~~~~-g--r~~~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
+..|+ | .......+......+ ....+.|+|++|+||||||+.+++..... .+ .+++++. ..+...+.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHH
Confidence 44554 3 334455555555544 35689999999999999999999887543 11 2334432 22333333
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----ccccCCCCCC-CCCCcEEEEEeCCh--------
Q 038205 196 KSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD----LETIGIPVGD-RDNCCKILLTTRLQ-------- 262 (375)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~IivTTr~~-------- 262 (375)
..+.. ... ..+.. .. .+..+|+|||++.... ...+...+.. ...|..+|+||.+.
T Consensus 82 ~~~~~----~~~----~~~~~---~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK----GTI----NEFRN---MY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH----TCH----HHHHH---HH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc----CcH----HHHHH---Hh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 32210 001 11111 22 2366999999965421 1112111110 12355788887642
Q ss_pred -hHHhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 263 -QVCYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 263 -~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
.+...+.....+.+.+ +.++...++...+..... .--.+..+.|++.+ |.+-
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHH
Confidence 2233343345688999 999999999887642111 11245677888888 6654
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.44 E-value=9e-07 Score=91.30 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=87.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC-----ccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI-----FDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+.+++||++++..++..+......-+.++|++|+||||+|+.+++....... -..++.+..+.-..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 5667889999999999999998776667899999999999999999988743210 11223332211100
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhc--CCCcEEEEEeCCCCcc-------cccc---cCCCCCCCCCCcEEEEEeC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSES--KSRKILVILDDVWKEL-------DLET---IGIPVGDRDNCCKILLTTR 260 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~-------~~~~---l~~~l~~~~~gs~IivTTr 260 (375)
+.... .+....+..++..+ .+++.+|++|+++... .++. +...+. ..+..+|.+|.
T Consensus 240 ------g~~~~----g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~ 307 (854)
T 1qvr_A 240 ------GAKYR----GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEEC
T ss_pred ------cCccc----hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecC
Confidence 00000 11112222222222 2468999999997542 1111 111111 12345666555
Q ss_pred ChhHH-----h-hhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 261 LQQVC-----Y-RMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 261 ~~~v~-----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
..... . .......+.+.+++.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 43321 1 11222458899999999999997543
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.42 E-value=1.3e-06 Score=83.77 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC---ccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI---FDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+.+++||+.++..+...+......-+.|+|++|+|||++|+.+++....... ....-++.+.-.
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 5567789999999999999997766667889999999999999999988643210 011111111110
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh-------h
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY-------R 267 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~-------~ 267 (375)
... ...........+.. .-..++.+|++| ...+....+...+. ....++|.+|....... .
T Consensus 246 -~~~----~g~~e~~~~~~~~~---~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 -TKY----RGEFEDRLKKVMDE---IRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ------------CTTHHHHHHH---HHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred -ccc----cchHHHHHHHHHHH---HHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 000 00000112222222 223567899999 22222222333332 22356666665443111 1
Q ss_pred hCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
......+.+.+.+.++...++.....
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHH
Confidence 12224689999999999999997664
No 50
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1e-06 Score=79.47 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCC
Q 038205 127 TESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGIATVSQDPSIINVQSELVKSLGWALTEK 205 (375)
Q Consensus 127 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 205 (375)
.++.++.|...+..++.+.+.++|++|+||||+|+.+.+..... .......++..+....-.+..+++.+.+...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~---- 77 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS---- 77 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC----
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc----
Confidence 45567778888877777789999999999999999998753211 1122233443322111112223333333211
Q ss_pred CHHHHHHHHHHHhhhcCCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCCh-hHHhhhCCCCcccCCCCChH
Q 038205 206 DEEDRADRLRLMFSESKSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQ-QVCYRMGCDPRIKLDALDQA 282 (375)
Q Consensus 206 ~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~-~v~~~~~~~~~~~l~~L~~~ 282 (375)
...+++-++|+|+++.. ...+.+...+....+.+.+|++|.+. .+...+... .+++.+++.+
T Consensus 78 --------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 78 --------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp --------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred --------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 22346779999998754 23333333333223456777766543 444444444 8999999999
Q ss_pred HHHHHHHHHc
Q 038205 283 EGLDLLRKHA 292 (375)
Q Consensus 283 e~~~Lf~~~~ 292 (375)
+....+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 51
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.35 E-value=4.4e-07 Score=75.29 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhc---CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 127 TESACNQIIEALKK---DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 127 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....++.+.+++.+ .....+.|+|++|+|||||++.+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555555555533 3467899999999999999999999876
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.9e-05 Score=73.05 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=107.3
Q ss_pred CCccchHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|-++.+++|.+.+. -..++-|.++||+|+|||+||+.+++..... | +.+..+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--f---i~vs~s~L---- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--F---IRVIGSEL---- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGG----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--e---EEEEhHHh----
Confidence 456677887777766531 1346789999999999999999999987632 2 23332211
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----------------ccccCCCCC--CCC
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD----------------LETIGIPVG--DRD 250 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 250 (375)
.......+.......+.. +-...+++|++|+++.... +..+...+. ...
T Consensus 280 ----------~sk~vGesek~ir~lF~~---Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 280 ----------VQKYVGEGARMVRELFEM---ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp ----------CCCSSSHHHHHHHHHHHH---HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred ----------hcccCCHHHHHHHHHHHH---HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 011111111122222222 4456789999999874310 001111111 123
Q ss_pred CCcEEEEEeCChhHH-----hhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH-HH---H
Q 038205 251 NCCKILLTTRLQQVC-----YRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA-IK---A 321 (375)
Q Consensus 251 ~gs~IivTTr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~---~ 321 (375)
.+..||.||...+.. ........+.+...+.++-.++|+.++.......+.. ...|++.|.|+--| |. .
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCCHHHHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCCHHHHHHHHH
Confidence 345566677643321 1112346788888899999999988775322222211 35677888876432 11 1
Q ss_pred HHHH--hc-C--C-CHHHHHHHHHHhhh
Q 038205 322 VGSA--LR-L--R-TADEWNVALDKLQN 343 (375)
Q Consensus 322 i~~~--L~-~--~-~~~~w~~~l~~l~~ 343 (375)
-|.+ ++ . . +.+++..+++++..
T Consensus 425 eAa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 425 EAGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 1222 12 2 1 56677777666543
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.6e-05 Score=74.79 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=108.1
Q ss_pred CCCccchHHHHHHHHHHHh----c---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 121 FSSFETTESACNQIIEALK----K---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
+....|-++.++.|.+.+. . ..++-|.++||+|+|||+||+.+++..... | +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--F---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEehhhhcc-
Confidence 3455677777777766541 1 236789999999999999999999987632 2 2333322110
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----------------ccccCCCCC--CC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD----------------LETIGIPVG--DR 249 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 249 (375)
.....+.......+.. +-...+++|++|+++.... +..+...+. ..
T Consensus 254 -------------k~~Gese~~ir~~F~~---A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAY---AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHH---HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred -------------ccchHHHHHHHHHHHH---HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 1111111111222222 3445899999999874210 111111111 12
Q ss_pred CCCcEEEEEeCChhHHhh--hC---CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH-HHHH-
Q 038205 250 DNCCKILLTTRLQQVCYR--MG---CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA-IKAV- 322 (375)
Q Consensus 250 ~~gs~IivTTr~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~i- 322 (375)
..+..||.||...+..+. .. ....+.+...+.++-.++|+.++.......+.. ...|++.+.|+--| |..+
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCCHHHHHHHH
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCCHHHHHHHH
Confidence 345567777776543221 12 235688888888888888887764222111111 35677788776433 2211
Q ss_pred --HHH--hc-CC---CHHHHHHHHHHhhh
Q 038205 323 --GSA--LR-LR---TADEWNVALDKLQN 343 (375)
Q Consensus 323 --~~~--L~-~~---~~~~w~~~l~~l~~ 343 (375)
|.+ ++ .+ +.++...++++...
T Consensus 396 ~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 396 TEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 222 22 21 56677777766554
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.31 E-value=1.8e-05 Score=72.48 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=114.2
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKK-----DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 192 (375)
|..+..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++..... |. ..+ .....
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~s-g~~~~------ 88 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTS-GPVLV------ 88 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEE-TTTCC------
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEe-chHhc------
Confidence 55677788888888777766643 234689999999999999999999987421 11 111 11000
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCC---CCC------CC---------CCC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGI---PVG------DR---------DNC 252 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~---~l~------~~---------~~g 252 (375)
...+....+. .+. ++.++++|++.... ..+.+.. ... .. -+.
T Consensus 89 -------------~~~~l~~~~~----~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 89 -------------KQGDMAAILT----SLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp -------------SHHHHHHHHH----HCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred -------------CHHHHHHHHH----Hcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 0111111111 222 34477788775421 1111100 000 00 011
Q ss_pred cEEE-EEeCChhHHhhhCC--CCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHHHHHH----
Q 038205 253 CKIL-LTTRLQQVCYRMGC--DPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSA---- 325 (375)
Q Consensus 253 s~Ii-vTTr~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~i~~~---- 325 (375)
..++ .|++...+...... .....+++.+.++..+++.+.+.... ..-..+.+..|++.++|.|-.+..+-..
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 2233 34443332211111 13578999999999999998763211 1222567899999999999755433221
Q ss_pred --hc-C-C-CHHHHHHHHHHhhhcccCCCCCCCCCchhhhhhhhhhcc
Q 038205 326 --LR-L-R-TADEWNVALDKLQNAKLDKIEGIDKDSRGVYGCLKFSYD 368 (375)
Q Consensus 326 --L~-~-~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~ 368 (375)
+. . . +.+.-+.+++.+... ....+.....++.++.-+|.
T Consensus 230 a~~~~~~~It~~~v~~al~~~~~~----~~~l~~~~~~~l~~~~~~~~ 273 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVLNID----DEGLDEFDRKILKTIIEIYR 273 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHHTCC----TTCCCHHHHHHHHHHHHHST
T ss_pred HHHcCCCCcCHHHHHHHHHHhCCC----cCCCCHHHHHHHHHHHHHhC
Confidence 11 1 2 666777777765421 11222222345555555553
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=7.9e-05 Score=65.30 Aligned_cols=178 Identities=15% Similarity=0.152 Sum_probs=93.7
Q ss_pred CCCCCccchHHHHHHHHHHH---hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 119 RFFSSFETTESACNQIIEAL---KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 119 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
..+..++|.+..++.+.+.+ .. ...+-+.|+|++|+||||||+.+++.... .| +.+..+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CE---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--CE---EEEeHHHHHH
Confidence 44566788887776665543 22 12456899999999999999999987642 12 2222211100
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCC--C
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVG--D 248 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~ 248 (375)
.............+.. .....+.++++|+++... ....+...+. .
T Consensus 84 --------------~~~~~~~~~~~~~~~~---a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 84 --------------MFVGVGASRVRDMFEQ---AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp --------------SCCCCCHHHHHHHHHH---HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred --------------HhhhhhHHHHHHHHHH---HHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 0011122223333333 344567899999984210 0011111111 1
Q ss_pred CCCCcEEEEEeCChhHH-hh-hC---CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCC-chhHHH
Q 038205 249 RDNCCKILLTTRLQQVC-YR-MG---CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKG-LPLAIK 320 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~-~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~ 320 (375)
...+..||.||...... .. .. ....+.+...+.++-.+++..++......++. ....++..+.| .+--|.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 12345677777654321 11 11 12456777888888888888776422111211 13456777777 555443
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.29 E-value=5.2e-06 Score=84.59 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=87.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC---CccEEEEEEecCCCChhHHHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN---IFDKVGIATVSQDPSIINVQSEL 194 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i 194 (375)
|..+.+++|++++++.+...+......-+.++|++|+|||++|+.+.+...... .....-++.+.-
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 456678999999999999999877667789999999999999999998863211 000111111111
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh-------h
Q 038205 195 VKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY-------R 267 (375)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~-------~ 267 (375)
+..............+.. ....++.+|++| ...+....+...+. ....++|.||....... .
T Consensus 245 ----g~~~~G~~e~~l~~~~~~---~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 ----GTKYRGEFEDRLKKVMDE---IRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ------------CTTHHHHHHH---HHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ----cccccchHHHHHHHHHHH---HHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 000001111122223333 333578899999 22222222322332 22456666665443111 1
Q ss_pred hCCCCcccCCCCChHHHHHHHHHHcC
Q 038205 268 MGCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 268 ~~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
......+.+...+.++..+++.....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 11225689999999999999997654
No 57
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.3e-05 Score=72.97 Aligned_cols=199 Identities=22% Similarity=0.211 Sum_probs=107.3
Q ss_pred CCCccchHHHHHHHHHHH----hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 121 FSSFETTESACNQIIEAL----KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
+....|-++.++.|.+.+ .. ..++-|.++||+|+|||.||+.+++..... | +.+..+.-
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l--- 252 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSEL--- 252 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGG---
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHh---
Confidence 344567777777776654 11 236789999999999999999999987632 2 22222211
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCccc----------------ccccCCCC--CC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKELD----------------LETIGIPV--GD 248 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l--~~ 248 (375)
...... +....++.++. +-...+++|++|+++.... +..+...+ ..
T Consensus 253 -----------~sk~vG----esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 253 -----------IQKYLG----DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------CCSSSS----HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------hhccCc----hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 011111 11122222222 3345789999998864210 11111111 11
Q ss_pred CCCCcEEEEEeCChhHHhh--hC---CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH-HHHH
Q 038205 249 RDNCCKILLTTRLQQVCYR--MG---CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA-IKAV 322 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~i 322 (375)
...+..||.||...+..+. .. ....+.+...+.++-.++|+.++......++. ....|++.+.|+--| |..+
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCCHHHHHHH
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCCHHHHHHH
Confidence 2344567777765544221 11 12567888888888899998877532222221 135677778776432 1111
Q ss_pred ---HHH--hcC-C---CHHHHHHHHHHhhhc
Q 038205 323 ---GSA--LRL-R---TADEWNVALDKLQNA 344 (375)
Q Consensus 323 ---~~~--L~~-~---~~~~w~~~l~~l~~~ 344 (375)
|.+ ++. + +.+++..++++...+
T Consensus 396 ~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 396 CTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 211 222 1 567777777765543
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.26 E-value=1.1e-05 Score=82.28 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=92.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEE-EecCCCChhHHHH
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIA-TVSQDPSIINVQS 192 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv-~~~~~~~~~~~~~ 192 (375)
|..+.+++||+.++..+.+.+......-+.|+|++|+|||++|+.+.+...... .....++. ..+. +.
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l~- 254 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------LL- 254 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred cCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------Hh-
Confidence 556778999999999999999877777889999999999999999998764321 11222222 1110 00
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCcc--------c---ccccCCCCCCCCCCcEEEEEeC
Q 038205 193 ELVKSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKEL--------D---LETIGIPVGDRDNCCKILLTTR 260 (375)
Q Consensus 193 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~--------~---~~~l~~~l~~~~~gs~IivTTr 260 (375)
.+..... .....+..++..+ ..++.+|++||++... . ...+...+. .....+|.+|.
T Consensus 255 -----~~~~~~g----~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 255 -----AGTKYRG----DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp -----CCCCCSS----CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -----ccccccc----hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 0000111 1112222222233 3367899999997541 1 112322232 23456666666
Q ss_pred ChhHHhhh-------CCCCcccCCCCChHHHHHHHHHHc
Q 038205 261 LQQVCYRM-------GCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 261 ~~~v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
........ .....+.+...+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54332111 111358899999999988887654
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.22 E-value=2.9e-05 Score=74.62 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=98.7
Q ss_pred CCCCccchHHHHHHHHHHHh-------------cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 120 FFSSFETTESACNQIIEALK-------------KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
.+..++|.+..+++|.+++. .....-+.|+|++|+|||++|+.+.+... .. .+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~---fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SE---EEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CC---EEEEEch----
Confidence 34567888988888887763 23456799999999999999999988753 11 2223211
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-------------cccccCCCCC--CCCC
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-------------DLETIGIPVG--DRDN 251 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~ 251 (375)
.+... ............+.. ...+++.+|+||+++... ....+...+. ....
T Consensus 273 ------~l~~~----~~g~~~~~~~~~f~~---A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 ------EIMSK----LAGESESNLRKAFEE---AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ------HHHTS----CTTHHHHHHHHHHHH---HHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ------Hhhhh----hcchhHHHHHHHHHH---HHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 11110 011111122222333 445678899999984210 0111111111 1223
Q ss_pred CcEEEEEeCChhH-Hhhh----CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc-hhHHHHH
Q 038205 252 CCKILLTTRLQQV-CYRM----GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL-PLAIKAV 322 (375)
Q Consensus 252 gs~IivTTr~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~i 322 (375)
+..||.||..... ...+ .....+.+...+.++-.++|..++.......+ .....++..+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 4566667765422 1111 22246889999999999999988753221111 1135566777775 4444433
No 60
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=8.6e-06 Score=76.57 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCCCccchHHHHHHHHHHH----hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC
Q 038205 120 FFSSFETTESACNQIIEAL----KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS 186 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 186 (375)
.+....|-++.++.|.+.+ .. ..++-|.++||+|+|||.||+.+++..... | +.+..+.-
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l-- 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--F---LKLAAPQL-- 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGG--
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--E---EEEehhhh--
Confidence 3456678888888877653 11 236789999999999999999999987632 2 22332211
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCc-------c---------cccccCCCCCC-
Q 038205 187 IINVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKE-------L---------DLETIGIPVGD- 248 (375)
Q Consensus 187 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~-------~---------~~~~l~~~l~~- 248 (375)
...... +....++.++. +-...+++|++|+++.. . .+..+...+..
T Consensus 252 ------------~~~~vG----ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 252 ------------VQMYIG----EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp ------------CSSCSS----HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ------------hhcccc----hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 001111 11122222222 33347899999998631 0 01111111111
Q ss_pred -CCCCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 249 -RDNCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 249 -~~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
...+..||.||...+..+. . .....+.+...+.++-.++|+.++......++.. ...|++.+.|+-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 2234566667765443221 1 1235688888888888888886653211111111 356777887754
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.17 E-value=1.2e-05 Score=76.71 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=94.9
Q ss_pred CCCCccchHHHHHHHHHHH---hcC---------CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEAL---KKD---------STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..+.|.++.++++.+.. ... -++-+.|+|++|+|||+||+.+++.... .| +.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--PF---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--CE---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--Ce---eeCCHHHHHHH
Confidence 3456778877766665543 221 2356889999999999999999987642 12 22332221110
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCC--CC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVG--DR 249 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 249 (375)
............+.. .....+.+|+||+++... .+..+...+. ..
T Consensus 89 --------------~~g~~~~~~r~lf~~---A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 --------------FVGVGAARVRDLFAQ---AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp --------------CTTHHHHHHHHHHHH---HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred --------------HhcccHHHHHHHHHH---HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 000011122222333 445678999999985421 1111111111 11
Q ss_pred CCCcEEEEEeCChhHHh--hhC---CCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 250 DNCCKILLTTRLQQVCY--RMG---CDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 250 ~~gs~IivTTr~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
..+..||.||...+... ... ....+.+...+.++-.++++.++......++.. ...+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 23567777777654422 122 224678888888888888887765322122211 345778888876
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.16 E-value=2.7e-06 Score=75.29 Aligned_cols=174 Identities=21% Similarity=0.208 Sum_probs=88.2
Q ss_pred CCCCccchHHHHHHHHHHHh---c---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEALK---K---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++..... |- .+... +.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~-----~v~~~-~~ 80 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FF-----SMGGS-SF 80 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CC-----CCCSC-TT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EE-----EechH-HH
Confidence 34567777666666655442 1 123457899999999999999999876531 21 11110 00
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-----------------cccccCCCCCC--
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-----------------DLETIGIPVGD-- 248 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~-- 248 (375)
.. .+. ...... ....+.. ....++.+|+|||++... .+..+...+..
T Consensus 81 ~~-------~~~-~~~~~~---~~~~~~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 81 IE-------MFV-GLGASR---VRDLFET---AKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp TT-------SCS-SSCSSS---SSTTHHH---HHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred HH-------hhc-chHHHH---HHHHHHH---HHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 00 000 000000 1111111 222356899999985421 12222222221
Q ss_pred -CCCCcEEEEEeCChhHHh--hh---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchh
Q 038205 249 -RDNCCKILLTTRLQQVCY--RM---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPL 317 (375)
Q Consensus 249 -~~~gs~IivTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 317 (375)
......||.||....... .. .....+.+...+.++-.+++...+.......+. ....|++.+.|.|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 112345666776543211 11 123568888999999999998876422111110 01335556777654
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4e-05 Score=71.97 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=89.7
Q ss_pred CCCccchHHHHHHHHHHHh----c---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 121 FSSFETTESACNQIIEALK----K---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
+....|-++.++.|.+.+. . ..++-|.++||+|+|||+||+.+++..... | +.+..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~--~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA--F---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE--E---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--e---EEEecchhhc-
Confidence 3456677887777766542 1 235679999999999999999999987632 2 2333332110
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hcCCCcEEEEEeCCCCcc----------------cccccCCCCC--C
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFS-ESKSRKILVILDDVWKEL----------------DLETIGIPVG--D 248 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~ 248 (375)
.... +....++.++. +-...++++++|+++... .+..+...+. .
T Consensus 245 -------------~~~G----e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 -------------KYLG----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp -------------SSCS----HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred -------------cccc----hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 1111 11122222222 334578999999985210 0111111111 1
Q ss_pred CCCCcEEEEEeCChhHHh--hhC---CCCcccCCCCC-hHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 249 RDNCCKILLTTRLQQVCY--RMG---CDPRIKLDALD-QAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 249 ~~~gs~IivTTr~~~v~~--~~~---~~~~~~l~~L~-~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
...+..||.||...+..+ ... ....+.+..++ .++-..+|+.++......++. -...|++.+.|+-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 234556777776543211 112 22467776554 455556666655322111111 1356777787754
No 64
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.02 E-value=2e-05 Score=66.43 Aligned_cols=60 Identities=27% Similarity=0.170 Sum_probs=40.0
Q ss_pred CCCCccch----HHHHHHHHHHHhcCC----CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEe
Q 038205 120 FFSSFETT----ESACNQIIEALKKDS----TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATV 181 (375)
Q Consensus 120 ~~~~~~gr----~~~~~~l~~~l~~~~----~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 181 (375)
.+..|++. ...++.+..++.... ...+.|+|++|+|||+||+.+++..... ...+++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~ 90 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV 90 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence 44555543 345566666665431 2789999999999999999999887643 233455543
No 65
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.00 E-value=5.7e-06 Score=65.96 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=35.1
Q ss_pred CccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 356788888888877642 3445678999999999999999988653
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.98 E-value=4.7e-05 Score=68.51 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=37.0
Q ss_pred CccchHHHHHHHHHHHhc--------------CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK--------------DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+++.++.+...+.. .....+.|+|++|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357888888888877643 2356788999999999999999998774
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.96 E-value=1.8e-05 Score=71.43 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=36.3
Q ss_pred CccchHHHHHHHHHHHhcC---------CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKKD---------STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3568888888887776432 134799999999999999999998765
No 68
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.95 E-value=9.6e-06 Score=64.99 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+.|+|++|+|||||++.+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999998764
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.88 E-value=1.6e-05 Score=70.10 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 121 FSSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+..++|....+..+.+.+.. .....+.|+|++|+|||++|+.+.+...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45677888888887766532 3346788999999999999999988754
No 70
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.81 E-value=0.00014 Score=65.11 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+..+.++||+|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999999874
No 71
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.80 E-value=0.00027 Score=68.91 Aligned_cols=45 Identities=33% Similarity=0.401 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHHh------cCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALK------KDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.++....+.+.+. ......+.++|++|+||||||+.+.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4566666655544431 12467899999999999999999998874
No 72
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=6.2e-06 Score=65.60 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=33.5
Q ss_pred CccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+.+...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 456777888777777642 3445688999999999999999887543
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.79 E-value=3e-05 Score=69.95 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=36.1
Q ss_pred CccchHHHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 356777888888777643 3456788999999999999999988653
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.72 E-value=9.1e-05 Score=74.87 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=92.4
Q ss_pred CccchHHHHHHHHHHH----hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhH
Q 038205 123 SFETTESACNQIIEAL----KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIIN 189 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 189 (375)
...|-++.+++|.+.+ .. ..++-|.++||+|+|||+||+.+++..... .+.+..+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~------- 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP------- 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHH-------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhH-------
Confidence 3455666555555543 22 135689999999999999999999877531 2233221
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--------c-----ccccCCCCC--CCCCCcE
Q 038205 190 VQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--------D-----LETIGIPVG--DRDNCCK 254 (375)
Q Consensus 190 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--------~-----~~~l~~~l~--~~~~gs~ 254 (375)
++.. .....+...+...+.. +....+++|+||+++... . ...+...+. ....+..
T Consensus 273 ---~l~s----k~~gese~~lr~lF~~---A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 ---EIMS----KLAGESESNLRKAFEE---AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---HHHS----SCTTHHHHHHHHHHHH---HTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ---Hhhc----ccchHHHHHHHHHHHH---HHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1110 1111111222223333 556689999999986421 0 011111110 1122345
Q ss_pred EEEEeCChhHH-hhh----CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhH
Q 038205 255 ILLTTRLQQVC-YRM----GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLA 318 (375)
Q Consensus 255 IivTTr~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 318 (375)
||.||...+.. ..+ .....+.+...+.++-.++|+.+........+. ....|++.+.|+--|
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGA 409 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCHH
Confidence 55566543321 111 223568888889999999998876532211111 135677888877543
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.72 E-value=0.00023 Score=72.40 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=78.2
Q ss_pred CccchHHHHHHHHHHHhcC-------C--CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHH
Q 038205 123 SFETTESACNQIIEALKKD-------S--TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSE 193 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~~-------~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 193 (375)
.++|.+..+..+...+... . ...+.++|++|+|||++|+.+.+..... -...+.+..+.-.+..
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~----- 564 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH----- 564 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC-----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc-----
Confidence 4678888888888776421 1 1269999999999999999999886321 1223344433211100
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc--cccccCCC-----CCC------CCCCcEEEEEeC
Q 038205 194 LVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL--DLETIGIP-----VGD------RDNCCKILLTTR 260 (375)
Q Consensus 194 i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~-----l~~------~~~gs~IivTTr 260 (375)
... .......++. ....+|+||++.... ....+... +.. ......||+||.
T Consensus 565 ---------~~~-~~~l~~~~~~------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ---------STS-GGQLTEKVRR------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------CCC----CHHHHHH------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------ccc-cchhhHHHHh------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 000 0111111221 233489999997531 11111110 100 123468888887
Q ss_pred C-----------------hhHHhhhCCCCcccCCCCChHHHHHHHHHHc
Q 038205 261 L-----------------QQVCYRMGCDPRIKLDALDQAEGLDLLRKHA 292 (375)
Q Consensus 261 ~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 292 (375)
. +.+...+ ..++.+.+++.++...++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 3 1111222 2478899999999988887654
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.69 E-value=0.00011 Score=70.10 Aligned_cols=48 Identities=29% Similarity=0.282 Sum_probs=36.7
Q ss_pred CCCccchHHHHHHHHHH---HhcC--CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 121 FSSFETTESACNQIIEA---LKKD--STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+..++|.++.++.+..+ +..+ ..+-+.++||+|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46788988887765544 3333 245799999999999999999988765
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.68 E-value=0.0009 Score=59.17 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred CCCccchHHHHHHHHHHHh----c---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 121 FSSFETTESACNQIIEALK----K---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
+....|-++..+.|.+.+. . .-.+-+.|+|++|+|||||++.++..... ..+.+....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~- 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN- 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh-
Confidence 3456677777766665431 1 11233999999999999999999987653 233333221110
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCcccc-------------cccCCCCCC--CCC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKELDL-------------ETIGIPVGD--RDN 251 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~~~-------------~~l~~~l~~--~~~ 251 (375)
....+....+..+++.. ...++++++|+++..... ..+...+.. ...
T Consensus 83 -----------------~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 83 -----------------MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred -----------------hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 00111122233333232 346789999998642100 000001111 122
Q ss_pred CcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcC
Q 038205 252 CCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 252 gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
..-++.+|....+.+. . .-...+.+...+.++-.++|+.+..
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3445566766554322 1 2335678888899999999988764
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.63 E-value=0.00037 Score=66.88 Aligned_cols=174 Identities=24% Similarity=0.217 Sum_probs=93.3
Q ss_pred CCCCCCccchHHHHHHHHHH---HhcC---------CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 118 PRFFSSFETTESACNQIIEA---LKKD---------STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
+..+..+.|.++.+.++.+. +... -.+-+.|+|++|+||||||+.+++.... ..+.++.+.-.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHH
Confidence 34456778888776666554 3221 1335899999999999999999987652 12333322110
Q ss_pred ChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC-CCcEEEEEeCCCCcc----------------cccccCCCCCC
Q 038205 186 SIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK-SRKILVILDDVWKEL----------------DLETIGIPVGD 248 (375)
Q Consensus 186 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~-~kr~LlVlDdv~~~~----------------~~~~l~~~l~~ 248 (375)
+ .........+..+++... ..+.++++|+++... .+..+...+..
T Consensus 102 ~------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 102 E------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp S------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred H------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 000112223444333332 356899999985321 01111111111
Q ss_pred --CCCCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 249 --RDNCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 249 --~~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
...+..++.||........ . .....+.+...+.++-.++++.++......++ .....|+..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 1233456666666554221 1 22356788888888888888876642211111 11345677777765
No 79
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=0.00015 Score=62.20 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------------------
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------------------ 203 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 203 (375)
...+++|+|++|+|||||++.+.......+ ..+.|+.... ....+...+ ..++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccC
Confidence 457999999999999999999987654321 2345554332 333333332 23332111
Q ss_pred ------CCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc-----cccccCCCCCC--CCCCcEEEEEeCCh
Q 038205 204 ------EKDEEDRADRLRLMFSESKSRKILVILDDVWKEL-----DLETIGIPVGD--RDNCCKILLTTRLQ 262 (375)
Q Consensus 204 ------~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----~~~~l~~~l~~--~~~gs~IivTTr~~ 262 (375)
..+..+....+.........+..+||+|.+.... ....+...+.. ...|..||++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1133344444444222223334599999876321 11111111111 12468899999875
No 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.58 E-value=0.00045 Score=59.39 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+|||||++.+......
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4679999999999999999999887653
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.56 E-value=0.00043 Score=59.86 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467999999999999999999988765
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=0.0014 Score=57.02 Aligned_cols=172 Identities=24% Similarity=0.267 Sum_probs=86.4
Q ss_pred CCCCccchHHHHHHHHHH---Hhc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEA---LKK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..++|.++...++.+. +.. .-.+-+.|+|++|+|||||++.+++.... ..+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH-----
Confidence 345566766555444433 221 11234899999999999999999987651 12222211
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCcc------------c----ccccCCCCCCC-
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKEL------------D----LETIGIPVGDR- 249 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~~- 249 (375)
.+.... .......+..+++.. .....++++|+++... . ...+...+...
T Consensus 84 -----~~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 84 -----DFVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp -----HHHHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred -----HHHHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 111100 001112233333333 2457899999984210 0 11111111111
Q ss_pred -CCCcEEEEEeCChhHHhh--h---CCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 250 -DNCCKILLTTRLQQVCYR--M---GCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 250 -~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
....-++.||........ . .....+.+...+.++-.++++.++......++. ....+++.+.|.-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 122344556665544221 1 223567888888888888888765422111111 1345677777654
No 83
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.00059 Score=58.84 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=54.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhCCCC----------CCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLGWAL----------TEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~ 207 (375)
...++.|+|++|+|||||+..+........ .-..++|+.....+....+ .++++.++... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457999999999999999999987532211 1246778776654444333 34445554321 11222
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSESK-SRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~-~kr~LlVlDdv~~ 235 (375)
.+....+..+...+. .+.-+||+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 333222222222333 4677999998864
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.46 E-value=0.001 Score=58.94 Aligned_cols=172 Identities=24% Similarity=0.248 Sum_probs=87.2
Q ss_pred CCCCccchHHHHHHHHHHH---hc---------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 120 FFSSFETTESACNQIIEAL---KK---------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 120 ~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
.+..++|.++...++.+.. .. .-.+-+.|+|++|+|||||++.+++.... ..+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH-----
Confidence 4556777776655554432 21 01223899999999999999999987651 12222211
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEEEeCCCCcc----------------cccccCCCCCCC-
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSES-KSRKILVILDDVWKEL----------------DLETIGIPVGDR- 249 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~~- 249 (375)
. +.... . ......+..+++.. ...+.++++|+++... .+..+...+...
T Consensus 108 -~----~~~~~----~----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 -D----FVEMF----V----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp -H----HHHST----T----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred -H----HHHHH----h----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1 11100 0 01112222222232 2457899999984210 011111112111
Q ss_pred -CCCcEEEEEeCChhHHh-----hhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCch
Q 038205 250 -DNCCKILLTTRLQQVCY-----RMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLP 316 (375)
Q Consensus 250 -~~gs~IivTTr~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 316 (375)
.....++.||....+.. .......+.+...+.++-.+++..++......++. ....++..+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 12234445666544321 11233578888889888888888766422111111 1345677777755
No 85
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.44 E-value=0.00077 Score=57.13 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCC----------CCCCCHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA----------LTEKDEEDRA 211 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~~~~~~~ 211 (375)
...++.|+|++|+|||||+..+.. .. -..++|+......+...+. .+...++.. ....+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 467999999999999999999988 21 2356777765544544333 333333221 0111111211
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCc
Q 038205 212 DRLRLMFSESKSRKILVILDDVWKE 236 (375)
Q Consensus 212 ~~l~~~~~~l~~kr~LlVlDdv~~~ 236 (375)
..+..+......+.-+||+|.+...
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 2222211133335789999988643
No 86
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.42 E-value=4.7e-05 Score=70.01 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=64.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSE 220 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 220 (375)
....+++|+|++|+|||||++.+......... ..++.+.-+-.+..... ..+..+.... .........+.. .
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~-~~i~t~ed~~e~~~~~~-~~~v~q~~~~---~~~~~~~~~La~---a 192 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY-HHILTIEDPIEFVHESK-KCLVNQREVH---RDTLGFSEALRS---A 192 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCC-CEEEEEESSCCSCCCCS-SSEEEEEEBT---TTBSCHHHHHHH---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCC-cEEEEccCcHHhhhhcc-ccceeeeeec---cccCCHHHHHHH---H
Confidence 44469999999999999999999887654210 11222211111100000 0000000000 001223345666 8
Q ss_pred cCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHhh
Q 038205 221 SKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCYR 267 (375)
Q Consensus 221 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~~ 267 (375)
|...+=+|++|++.+.+.++.+... ...|..||+||+..+....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHHH
Confidence 8889999999999876555443222 2346789999998766543
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=0.00075 Score=68.91 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=81.1
Q ss_pred CCCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCCh
Q 038205 121 FSSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSI 187 (375)
Q Consensus 121 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 187 (375)
+...+|.+..+++|.+++.. .....|.|+|++|+||||||+.+.+.... .| +.+..+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--EE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--cE---EEEEchH----
Confidence 34567777777777776532 24568999999999999999999887542 12 2222110
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCcc----------------cccccCCCCCCCCC
Q 038205 188 INVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL----------------DLETIGIPVGDRDN 251 (375)
Q Consensus 188 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~~~~ 251 (375)
+...............+.. .....+.++++|+++... .+..+...+. ...
T Consensus 274 ----------l~~~~~g~~~~~l~~vf~~---a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 274 ----------IMSKLAGESESNLRKAFEE---AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp ----------HSSSSTTHHHHHHHHHHHH---HHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred ----------hhhhhhhhHHHHHHHHHHH---HHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 1000011111112222222 333467899999984321 0111111111 123
Q ss_pred CcEEEEEeCChhHH-hhh----CCCCcccCCCCChHHHHHHHHHHcC
Q 038205 252 CCKILLTTRLQQVC-YRM----GCDPRIKLDALDQAEGLDLLRKHAG 293 (375)
Q Consensus 252 gs~IivTTr~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 293 (375)
+..+|.||...... ..+ .....+.+...+.++-.+++..++.
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 44566666653221 111 1124567888889999999987764
No 88
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.34 E-value=0.00082 Score=59.86 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467999999999999999999988765
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.33 E-value=0.00044 Score=62.31 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=35.6
Q ss_pred CCCCCccc----hHHHHHHHHHHHhcC---CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 119 RFFSSFET----TESACNQIIEALKKD---STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 119 ~~~~~~~g----r~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+..|++ +...+..+.+++... ....+.|+|++|+|||+||..+++...
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555553 344555566666542 246889999999999999999999876
No 90
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.33 E-value=0.0019 Score=59.00 Aligned_cols=163 Identities=10% Similarity=-0.050 Sum_probs=94.7
Q ss_pred HHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 038205 135 IEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRL 214 (375)
Q Consensus 135 ~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 214 (375)
.+.+...-.++..++|+.|.||++.++.+....... .|.....+.+....++..+...+
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-------------------- 68 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLC-------------------- 68 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHH--------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHh--------------------
Confidence 334443446799999999999999999998876432 23221112222222332222221
Q ss_pred HHHhhhcCCCcEEEEEeCCCC-c--ccccccCCCCCCCCCCcEEEEEeCC-------hhHHhhh-CCCCcccCCCCChHH
Q 038205 215 RLMFSESKSRKILVILDDVWK-E--LDLETIGIPVGDRDNCCKILLTTRL-------QQVCYRM-GCDPRIKLDALDQAE 283 (375)
Q Consensus 215 ~~~~~~l~~kr~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~IivTTr~-------~~v~~~~-~~~~~~~l~~L~~~e 283 (375)
... -+.+++-++|+|+++. . ..++.+...+..-.+++.+|++|.. ..+...+ .....++..+++.++
T Consensus 69 ~~~--plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 69 QAM--SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp HHH--HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred cCc--CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 110 3456677889999865 2 3444443333333346677766543 2344333 333678899999999
Q ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHcCCchhHHHH
Q 038205 284 GLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKA 321 (375)
Q Consensus 284 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 321 (375)
....+.+.+...... --.+.++.+++.++|.+..+..
T Consensus 147 l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHH
Confidence 998887766321111 1145677888888888776643
No 91
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.32 E-value=0.00016 Score=64.91 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.+++.|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467889999999999999999876
No 92
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.25 E-value=0.00065 Score=62.29 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4567999999999999999999977654
No 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00028 Score=59.67 Aligned_cols=41 Identities=29% Similarity=0.538 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 129 SACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 129 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.+++|.+.+.. +...+|+|+|++|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455566666543 45679999999999999999999888764
No 94
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.22 E-value=0.0026 Score=56.89 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=54.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHH-HHHHHHH
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDR-ADRLRLM 217 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~-~~~l~~~ 217 (375)
++.|.|++|+|||||+.++.........=..++|++....++.. .+++++.+.+ +.+.++. ...+..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999887765532112457888877666543 3677775433 2233444 3322221
Q ss_pred hhhcCCCcEEEEEeCCCCc
Q 038205 218 FSESKSRKILVILDDVWKE 236 (375)
Q Consensus 218 ~~~l~~kr~LlVlDdv~~~ 236 (375)
...-..+.-|+|+|.+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 0012347789999998654
No 95
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.21 E-value=0.0003 Score=71.57 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=35.2
Q ss_pred CccchHHHHHHHHHHHhcC---------CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 123 SFETTESACNQIIEALKKD---------STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+.+..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4668888888877766321 12378999999999999999999877
No 96
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.18 E-value=0.00069 Score=69.81 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=36.1
Q ss_pred CccchHHHHHHHHHHHhcC---------CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKKD---------STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|.+..+..+...+... ....+.|+|++|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578888888887776321 124789999999999999999998764
No 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.18 E-value=0.00047 Score=57.93 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHhc---CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 126 TTESACNQIIEALKK---DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 126 gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+|++.++.|.+.+.. ....+|+|.|++|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677778777653 34679999999999999999999887653
No 98
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.11 E-value=0.00054 Score=56.91 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhC-------C--CCCCCCH----HH
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLG-------W--ALTEKDE----ED 209 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-------~--~~~~~~~----~~ 209 (375)
...|.|++..|.||||+|-.+.-+.-..+ + .+.++...... ...--..++..++ . .+..... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 45777778888999999988777665432 2 23333322211 1111222333332 1 1111111 12
Q ss_pred HHHHHHHHhhhcCCCcE-EEEEeCCCCc-----ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 210 RADRLRLMFSESKSRKI-LVILDDVWKE-----LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 210 ~~~~l~~~~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
....+....+.+.+.+| |||||++... ...+.+...+........||+|+|+.
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 22333334446655555 9999997432 12222222233334557899999974
No 99
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.11 E-value=0.0021 Score=57.39 Aligned_cols=85 Identities=19% Similarity=0.103 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec-CCCChhHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS-QDPSIINVQSELVKSLGWALTE-KDEEDRADRLRLMFS 219 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~ 219 (375)
...+++++|++|+||||++..+.......... .+..+... ......+.+.......+.+... .+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~---- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE---- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH----
Confidence 46799999999999999999998887642222 23333322 2223333344444434433211 22233333332
Q ss_pred hcCCCcEEEEEeC
Q 038205 220 ESKSRKILVILDD 232 (375)
Q Consensus 220 ~l~~kr~LlVlDd 232 (375)
.+ .+.-++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 23 3445888993
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.10 E-value=0.0029 Score=57.82 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhCCCC----------CCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLGWAL----------TEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~ 207 (375)
...++.|+|++|+|||||+..++....... .-..++|++....++...+. +++..++... ...+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 467999999999999999999887643211 12467888877766655443 4445554321 11112
Q ss_pred HHH---HHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 208 EDR---ADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~---~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
++. ...+.........+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 222 2223332222225567999998854
No 101
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.08 E-value=0.0014 Score=61.88 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-HHH--
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-EDR-- 210 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~~~-- 210 (375)
..+.++|+|++|+|||||+..+......... ...+++-+.+.. ...+++.++...-.. .....++ ...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~ 228 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRV 228 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHH
Confidence 4568999999999999999999887664322 234555565544 333444444332000 1111222 111
Q ss_pred ---HHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 211 ---ADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 211 ---~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
.-.+.+++...+++.+||++||+.
T Consensus 229 ~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 229 ALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 123344443446899999999984
No 102
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.06 E-value=0.0022 Score=58.68 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
...++.|+|++|+|||||+.++.......+ ..++|+.....++.. .+++++.... ..+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999988765432 246777766555543 4555654322 223344444444
Q ss_pred HHhhhcCCCcEEEEEeCCCCc
Q 038205 216 LMFSESKSRKILVILDDVWKE 236 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv~~~ 236 (375)
.+.. ..+.-++|+|.+...
T Consensus 133 ~l~~--~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVR--SGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHH--TSCCSEEEEECTTTC
T ss_pred HHhh--hcCCCeEEehHhhhh
Confidence 4211 245568999987643
No 103
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.02 E-value=0.0041 Score=56.35 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCCCChhHHHHHHHHHhCCCC----------CCCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQDPSIINVQSELVKSLGWAL----------TEKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~ 207 (375)
...++.|+|++|+|||||+..++....... .-..++|++....++...+. ++++.++... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 457999999999999999999887643211 12367888877766655544 4455555432 11222
Q ss_pred HHHHHHHHHHhhhcC--CCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSESK--SRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l~--~kr~LlVlDdv~~ 235 (375)
++....+..+...+. .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 322222222222332 4567999998853
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.02 E-value=0.0046 Score=52.59 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC----CccEEEEEEecCC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN----IFDKVGIATVSQD 184 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~ 184 (375)
...+++|+|++|+|||||++.+........ .-...+|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 457999999999999999999987543211 1334677765443
No 105
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.95 E-value=0.0043 Score=57.07 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
...++.|.|++|+||||||..+.......+ ..++|++....++.. .+..++.... ..+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 457899999999999999999887665332 357888877665543 2445554321 223444444444
Q ss_pred HHhhhcC-CCcEEEEEeCCCC
Q 038205 216 LMFSESK-SRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l~-~kr~LlVlDdv~~ 235 (375)
. ... .+.-+||+|.+..
T Consensus 146 ~---l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 L---LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp H---HHTTTCCSEEEEECTTT
T ss_pred H---HHhcCCCCEEEEeChHH
Confidence 4 222 3456999998754
No 106
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.92 E-value=0.029 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
+.+|.++|++|+||||++..++......
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6799999999999999999998877653
No 107
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.92 E-value=0.0042 Score=56.19 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=54.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcC---------Cc-----cEEEEEEecCCCChhHHHHHHHHHhCCCC-----
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNN---------IF-----DKVGIATVSQDPSIINVQSELVKSLGWAL----- 202 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----- 202 (375)
...++.|+|++|+|||+||..++....... .. ..++|++....++...+. ++++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 457999999999999999999886532110 11 467888877766655554 3455555432
Q ss_pred -----CCCCHHHHHHHHHHHhhhcC--CCcEEEEEeCCCC
Q 038205 203 -----TEKDEEDRADRLRLMFSESK--SRKILVILDDVWK 235 (375)
Q Consensus 203 -----~~~~~~~~~~~l~~~~~~l~--~kr~LlVlDdv~~ 235 (375)
...+.++....+..+...+. .+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 11222322222222222333 3456999998753
No 108
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.89 E-value=0.005 Score=56.31 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
...++.|+|++|+|||||+.++.......+ ..++|++....++.. .++.++.... ..+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 467999999999999999999987665332 356788777655542 3455554321 123344434333
Q ss_pred HHhhhc-CCCcEEEEEeCCCC
Q 038205 216 LMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l-~~kr~LlVlDdv~~ 235 (375)
. .. ..+.-+||+|.+..
T Consensus 133 ~---l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 M---LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp H---HHTTTCCSEEEEECGGG
T ss_pred H---HHhcCCCCEEEEcChHh
Confidence 3 22 33566999998754
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.89 E-value=0.00054 Score=56.80 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....+++|+|++|+|||||++.+...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999876
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.0006 Score=56.17 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 111
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.88 E-value=0.0014 Score=60.18 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcC-CccEEEEEEecCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN-IFDKVGIATVSQDP 185 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~ 185 (375)
...+.++|+|++|+|||||++.+.+.....+ .+.+ +++-+.+..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 4678999999999999999999988765432 2333 346666543
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.88 E-value=0.00067 Score=56.88 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=26.2
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 139 KKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 139 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
......+|.|+|++|+||||+++.+.....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999998876
No 113
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.87 E-value=0.00064 Score=57.02 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+|+|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998766
No 114
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.86 E-value=0.00064 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++|+|++|+|||||++.+....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35699999999999999999998764
No 115
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.85 E-value=0.00055 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
++++|+|++|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999988765
No 116
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.85 E-value=0.0049 Score=57.43 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc----CCccEEEEEEecCCCChhHHHHHHHHHhCCCCC----------CCCH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN----NIFDKVGIATVSQDPSIINVQSELVKSLGWALT----------EKDE 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 207 (375)
...++.|+|++|+|||||+..++-..... ..-..++|+.....+.... +..+++.++.... ....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 46799999999999999999775332211 1234577877665554443 3446666654211 1122
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEEeCCCC
Q 038205 208 EDRADRLRLMFSES-KSRKILVILDDVWK 235 (375)
Q Consensus 208 ~~~~~~l~~~~~~l-~~kr~LlVlDdv~~ 235 (375)
......+......+ ..+.-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22222222222222 23677999998643
No 117
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.84 E-value=0.0029 Score=63.99 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChh
Q 038205 122 SSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSII 188 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 188 (375)
....|.++..+.|.+.+.- ...+-+.++||+|+|||.+|+.+++..... ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----c
Confidence 3445667777776665421 124568899999999999999999987632 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEEEeCCCCccc----------------ccccCCCCC--CCC
Q 038205 189 NVQSELVKSLGWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKELD----------------LETIGIPVG--DRD 250 (375)
Q Consensus 189 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 250 (375)
+++. .....+.......+.. +-...+++|+||+++.... ...+...+. ...
T Consensus 546 ----~l~s----~~vGese~~vr~lF~~---Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 546 ----ELLT----MWFGESEANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ----HHHT----TTCSSCHHHHHHHHHH---HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred ----hhhc----cccchHHHHHHHHHHH---HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1111 1122333333333333 4456899999999864210 111111111 112
Q ss_pred CCcEEEEEeCChhH-----HhhhCCCCcccCCCCChHHHHHHHHHHcCCCCCCCCchHHHHHHHHHcCCc
Q 038205 251 NCCKILLTTRLQQV-----CYRMGCDPRIKLDALDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGL 315 (375)
Q Consensus 251 ~gs~IivTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 315 (375)
.+.-||-||...+. .....-...+.+...+.++-.++|+.+.......++. -...|++.+.|+
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 23334445543322 1111234567777777777778887766432211111 124455566554
No 118
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.82 E-value=0.0028 Score=62.29 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++|+|++|+|||||++.+.....
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567999999999999999999977654
No 119
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.77 E-value=0.00083 Score=55.26 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+|++|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988765
No 120
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.77 E-value=0.00076 Score=61.65 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
|..+..++|.+..+..+..........-+.|+|++|+|||++|+.+.+...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 445667888888666654444333334589999999999999999998764
No 121
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.77 E-value=0.01 Score=53.65 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
..+.+++|+|++|+||||+++.+....+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999998877653
No 122
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.76 E-value=0.00082 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999988764
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.76 E-value=0.00067 Score=55.38 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVG 164 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~ 164 (375)
...+++|+|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45799999999999999999644
No 124
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.75 E-value=0.00075 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|+|+|++|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 125
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.75 E-value=0.00087 Score=56.61 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+|+|+||+|+|||||++.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999999988764
No 126
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.73 E-value=0.0078 Score=55.08 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCc----cEEEEEEecCCCChhHHHHHHHHHhCCCC----------CCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIF----DKVGIATVSQDPSIINVQSELVKSLGWAL----------TEKD 206 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~ 206 (375)
....++.|+|++|+|||||+..++......... ..++|+.....+.. .-+..+++..+... ....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~-~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-ERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH-HHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH-HHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 356899999999999999999998775211111 24577776554332 22334444443211 0111
Q ss_pred HH---HHHHHHHHHhhhcC---CCcEEEEEeCCCCc
Q 038205 207 EE---DRADRLRLMFSESK---SRKILVILDDVWKE 236 (375)
Q Consensus 207 ~~---~~~~~l~~~~~~l~---~kr~LlVlDdv~~~ 236 (375)
.. +....+..+...+. .+.-+||+|.+...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 11 12223333222221 46779999998654
No 127
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.72 E-value=0.0009 Score=56.42 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999999988763
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.00098 Score=55.81 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456999999999999999999998764
No 129
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.00091 Score=54.28 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 130
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.71 E-value=0.00095 Score=56.34 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|+|+|++|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988755
No 131
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.69 E-value=0.02 Score=51.50 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
....++.|.|.+|+|||||+..++......+ ..++|++.. .+...+...+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 3467999999999999999999987665433 456666644 344455544443
No 132
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.69 E-value=0.0011 Score=53.45 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+++|+|+.|+|||||++.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998876
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.67 E-value=0.002 Score=57.41 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+.+|+|.|++|+|||||++.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34679999999999999999999887764
No 134
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.66 E-value=0.00085 Score=56.22 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.++|+||+|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999987653
No 135
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.64 E-value=0.00095 Score=54.20 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=18.9
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 038205 144 KMVGLHGLGGVGKTTLAKFV 163 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v 163 (375)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 136
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.62 E-value=0.0012 Score=55.35 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++|+|++|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45699999999999999999998766
No 137
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0088 Score=54.79 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
...++.|.|++|+||||||.++.......+ ..++|++....++.. .+..++.... ..+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 467999999999999999999887765432 357788876665533 2455554321 123334444443
Q ss_pred HHhhhcCCCcEEEEEeCCCC
Q 038205 216 LMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv~~ 235 (375)
.+.. ..+.-+||+|.+..
T Consensus 135 ~l~~--~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALAR--SGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHH--HTCCSEEEEECGGG
T ss_pred HHHh--ccCCCEEEEcCHHH
Confidence 3211 23455999998753
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.62 E-value=0.001 Score=56.71 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+++|+|++|+|||||++.+....
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346799999999999999999998865
No 139
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.61 E-value=0.0021 Score=58.37 Aligned_cols=107 Identities=16% Similarity=0.077 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhcC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSESK 222 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 222 (375)
...++|+|++|+|||||++.+....... ...+.+.-......... . ..++.-.. ........+.. .+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~-~---~~i~~~~g--gg~~~r~~la~---aL~ 238 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHH-K---NYTQLFFG--GNITSADCLKS---CLR 238 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSC-S---SEEEEECB--TTBCHHHHHHH---HTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccc-h---hEEEEEeC--CChhHHHHHHH---Hhh
Confidence 4689999999999999999998876542 23333332211110000 0 00000000 12233445555 777
Q ss_pred CCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhH
Q 038205 223 SRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQV 264 (375)
Q Consensus 223 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v 264 (375)
.++-+|++|++.+.+.++.+. .+.. .+..+|+||+..+.
T Consensus 239 ~~p~ilildE~~~~e~~~~l~-~~~~--g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYN-VLCS--GHKGTLTTLHAGSS 277 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHH-HHHT--TCCCEEEEEECSSH
T ss_pred hCCCEEEEcCCChHHHHHHHH-HHhc--CCCEEEEEEcccHH
Confidence 888899999998754444332 2221 12347888887553
No 140
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.60 E-value=0.0019 Score=58.63 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 122 SSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..++|+++.+..+...+..+ .-+.++|++|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45678888888888887664 4688999999999999999988764
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.007 Score=54.23 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.+.++.|+|++|+||||++..++......
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 35799999999999999999999887653
No 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.60 E-value=0.0014 Score=53.54 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+|+|+|++|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998764
No 143
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.59 E-value=0.018 Score=54.35 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCCC-------------CCCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGWA-------------LTEKD 206 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------------~~~~~ 206 (375)
...+.++|.|.+|+|||+|+..+.+.... .+-+.++++-+.+.. ...++++++...-... ..+.+
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p 229 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence 46789999999999999999999887532 223456677776654 4556666666542111 01111
Q ss_pred H-H-----HHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 207 E-E-----DRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 207 ~-~-----~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
. . .....+.+++..-+++.+||++||+.
T Consensus 230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 1 12233445444446899999999975
No 144
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.59 E-value=0.0013 Score=56.12 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+||+|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999988764
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.58 E-value=0.013 Score=55.12 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.+.+|.++|++|+||||++..++......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998776643
No 146
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.58 E-value=0.0012 Score=54.46 Aligned_cols=29 Identities=38% Similarity=0.526 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+|.|.|++|+||||+++.+......
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999988764
No 147
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.56 E-value=0.0013 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 148
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.0012 Score=55.42 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|++|+||||+++.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 149
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.55 E-value=0.0014 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.|.|+|++|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 150
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.55 E-value=0.00071 Score=57.73 Aligned_cols=109 Identities=13% Similarity=-0.003 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTE---KDEEDRADRLRLMF 218 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~~ 218 (375)
...++.|+|+.|+||||++..+..+....+. .+..+..... .. ...++++.++..... ....+....+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~--kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~-- 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV--KYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMS-- 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC--CEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS--
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC--EEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHH--
Confidence 4578999999999999999988887765422 2233322211 11 112344444432221 122233333333
Q ss_pred hhcCCCc-EEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCC
Q 038205 219 SESKSRK-ILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRL 261 (375)
Q Consensus 219 ~~l~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~ 261 (375)
.+.+.+ -+||+|++... +.++.+ ..+.. .|..||+|.+.
T Consensus 84 -~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 84 -NSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp -TTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred -HhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 444444 49999998642 222222 11211 26789999884
No 151
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.54 E-value=0.0014 Score=56.87 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+|+|.|++|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998764
No 152
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.53 E-value=0.0013 Score=56.61 Aligned_cols=28 Identities=25% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467999999999999999999976554
No 153
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.52 E-value=0.0015 Score=58.84 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+|+|+|++|+|||||++.+......
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999887764
No 154
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.52 E-value=0.0025 Score=62.67 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++|+|++|+|||||++.+.....
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3567999999999999999999876554
No 155
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0013 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|.|+|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 357899999999999999999988663
No 156
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.51 E-value=0.0016 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..++|+|+||+|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999987654
No 157
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.50 E-value=0.0041 Score=64.09 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=62.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh-hh---hcCCccEEEEEEecCCC-------Ch-----------hHHHHHHHHHhC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ-LR---QNNIFDKVGIATVSQDP-------SI-----------INVQSELVKSLG 199 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~-~~---~~~~f~~~~wv~~~~~~-------~~-----------~~~~~~i~~~l~ 199 (375)
...+++|+|++|+|||||++.+..- .. ..... .. +.+.+.. +. .....+++..++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~-~~--~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-RT--VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTS-CE--EETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccce-eE--EEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 4679999999999999999999841 10 00011 11 2233221 11 122334455555
Q ss_pred CC-------CCCCCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc---ccccCCCCCCCCCCcEEEEEeCChhHHhh
Q 038205 200 WA-------LTEKDE-EDRADRLRLMFSESKSRKILVILDDVWKELD---LETIGIPVGDRDNCCKILLTTRLQQVCYR 267 (375)
Q Consensus 200 ~~-------~~~~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~IivTTr~~~v~~~ 267 (375)
.. ....+. +...-.+.. .+..++-+|+||+..+.-+ -..+...+.. .|..||++|++......
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLAr---AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALAR---AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHH---HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHH---HHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 42 011122 122223333 6667788999998765421 1111111211 36789999998766543
No 158
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.49 E-value=0.0014 Score=54.26 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 159
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.48 E-value=0.0016 Score=56.47 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.+|+|+|++|+|||||++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999996553
No 160
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.48 E-value=0.0017 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..+|+|+|++|+||||+++.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998755
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.46 E-value=0.0017 Score=53.54 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|++|+||||+++.+.....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998765
No 162
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.46 E-value=0.002 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999877664
No 163
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.43 E-value=0.018 Score=54.15 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.+++|.++|.+|+||||++..++......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998877654
No 164
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.43 E-value=0.0035 Score=53.31 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 128 ESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 128 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
++....+...+.......|.|+|.+|+|||||+..+.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555556678999999999999999999987754
No 165
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.43 E-value=0.0016 Score=55.72 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+..-..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999976554
No 166
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.43 E-value=0.0016 Score=53.83 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.|.|+||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987654
No 167
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.41 E-value=0.0017 Score=53.59 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+|.|.|++|+||||+++.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987763
No 168
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.41 E-value=0.002 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987663
No 169
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.40 E-value=0.0032 Score=60.39 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=37.0
Q ss_pred CccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 123 SFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 123 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+++.++.+...+..+ .-+.|+|++|+|||+||+.+.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4678888888888777654 4788999999999999999998774
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0018 Score=53.79 Aligned_cols=25 Identities=44% Similarity=0.506 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+++|+|++|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4789999999999999999988764
No 171
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.38 E-value=0.0018 Score=56.72 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999977654
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.38 E-value=0.0019 Score=52.96 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.|.|.|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987654
No 173
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.37 E-value=0.012 Score=55.70 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCCC--------------CCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGWA--------------LTEK 205 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~ 205 (375)
...+.++|.|.+|+|||+|+..+.+.... .+-+.++++-+.... ...++.+++...=... ..+.
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 45789999999999999999999887543 223566777777665 4556666665531111 0011
Q ss_pred CH------HHHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 206 DE------EDRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 206 ~~------~~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
+. ....-.+.+++..-+++.+||++||+.
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11 122233445443446799999999974
No 174
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.36 E-value=0.0045 Score=56.32 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHh----cCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 126 TTESACNQIIEALK----KDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 126 gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.+...+.+++.+. .+....|.|+|++|+||||+++.++....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34555666666653 34455699999999999999999887765
No 175
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.36 E-value=0.0021 Score=55.61 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.. .+++|+|++|+|||||++.+..-..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 7999999999999999999987654
No 176
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0031 Score=53.43 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 127 TESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 127 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+..+.+...+.....+.|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344555565655556678999999999999999999987754
No 177
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.35 E-value=0.0019 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..|.|.|++|+||||+++.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 178
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.33 E-value=0.0021 Score=56.40 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3567999999999999999999987654
No 179
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.33 E-value=0.0025 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....|.|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999886
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.33 E-value=0.002 Score=56.14 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|.|++|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987654
No 181
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.33 E-value=0.0029 Score=51.38 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
..++++|.|++|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887643
No 182
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.32 E-value=0.002 Score=56.90 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+..-..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 467999999999999999999976554
No 183
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.32 E-value=0.0024 Score=52.93 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|.|.|++|+||||+++.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987654
No 184
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.32 E-value=0.0039 Score=57.40 Aligned_cols=45 Identities=27% Similarity=0.186 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHHh-------------c--CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALK-------------K--DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3677777777777662 1 1345789999999999999999998774
No 185
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0025 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+|+|+|++|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45699999999999999999998554
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.30 E-value=0.0023 Score=53.79 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+|+|+|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998764
No 187
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0024 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.+|.|.|++|+||||+++.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 188
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.28 E-value=0.0019 Score=54.74 Aligned_cols=27 Identities=41% Similarity=0.682 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.++...+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999987654
No 189
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.0023 Score=55.87 Aligned_cols=28 Identities=29% Similarity=0.588 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999987654
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.28 E-value=0.0022 Score=53.65 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 191
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.28 E-value=0.0024 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|+|.|++|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 192
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.28 E-value=0.0023 Score=55.28 Aligned_cols=24 Identities=38% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
...+++|+|++|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999999884
No 193
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.28 E-value=0.0025 Score=51.52 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+|.|++|+||||+++.+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999988765
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0027 Score=56.91 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+++|+|++|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887654
No 195
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.27 E-value=0.0026 Score=52.91 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|+|.|++|+||||+++.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 196
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.27 E-value=0.002 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.249 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..+++|+|++|+|||||++.+...
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999877
No 197
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.0024 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...|.|.|++|+||||+++.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987653
No 198
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.26 E-value=0.0022 Score=56.06 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+..-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999976654
No 199
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.26 E-value=0.0026 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....+++|+|++|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999885
No 200
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.26 E-value=0.0021 Score=56.42 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+..-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 467999999999999999999977554
No 201
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.26 E-value=0.0022 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 202
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.26 E-value=0.0016 Score=55.79 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH-hhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVG-NQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~-~~~ 167 (375)
...+++|+|++|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45799999999999999999998 654
No 203
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.26 E-value=0.0023 Score=55.36 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.++.-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999977654
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0023 Score=53.75 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 205
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.24 E-value=0.002 Score=66.44 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFV 163 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v 163 (375)
...+++|+||+|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 206
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.24 E-value=0.0052 Score=55.23 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+|+|+|++|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467999999999999999999988654
No 207
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.23 E-value=0.0024 Score=55.31 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999976543
No 208
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.22 E-value=0.0028 Score=53.78 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..++|.|.|++|+||||.|+.+.....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999999998764
No 209
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.22 E-value=0.0026 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...+++|+|++|+|||||++.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999885
No 210
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.22 E-value=0.0029 Score=53.13 Aligned_cols=27 Identities=19% Similarity=0.478 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+|.|.|++|+||||+++.+......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999987764
No 211
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.21 E-value=0.005 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.+.+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 212
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.21 E-value=0.0026 Score=55.73 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+.....
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3567999999999999999999977543
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.003 Score=51.51 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
++++|+|++|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999887754
No 214
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.21 E-value=0.0029 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|+|.|++|+||||+++.+.....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 215
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.21 E-value=0.028 Score=51.57 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=34.8
Q ss_pred HHHHHHhc-CCCcEEEEEcCCCchHHHHHHHHHhhhhhc-CCccEEEEEEecCC
Q 038205 133 QIIEALKK-DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN-NIFDKVGIATVSQD 184 (375)
Q Consensus 133 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 184 (375)
+.++.+.. ...+.++|+|++|+|||+|+..+.+..... ..+.+ +++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 44555543 567899999999999999999998876542 22333 34555543
No 216
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0028 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...+|+|.|+.|+||||+++.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
No 217
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.20 E-value=0.0051 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.+|+|.|++|+|||||++.+.....
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999987765
No 218
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.20 E-value=0.0025 Score=55.33 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+..-..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999977654
No 219
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.20 E-value=0.0026 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567999999999999999999977654
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.19 E-value=0.0042 Score=54.35 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=59.9
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecC-CCChhHHHHHHHH--HhCCCCCCCCHHHHHHHHHH
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQ-DPSIINVQSELVK--SLGWALTEKDEEDRADRLRL 216 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~l~~ 216 (375)
-....+++|+|++|+|||||++.+....... +...+++.-.. ..-.... ..+.. .++. .. ......+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl--~~---~~l~~~la~ 93 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE--DT---KSFADALRA 93 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT--TB---SCHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC--CH---HHHHHHHHH
Confidence 4556799999999999999999998876532 12222221110 0000000 00000 0110 01 122344444
Q ss_pred HhhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 217 MFSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 217 ~~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
.+..++-+|++|+..+......+... ...|..|++||++.+...
T Consensus 94 ---aL~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 94 ---ALREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTAID 137 (261)
T ss_dssp ---HHHHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSHHH
T ss_pred ---HHhhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchHHH
Confidence 55557779999999755433322111 134678999999866543
No 221
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.19 E-value=0.0027 Score=62.76 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=41.0
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 118 PRFFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 118 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
|..+..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+.....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 455667889998888887777655 5899999999999999999998765
No 222
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.17 E-value=0.0028 Score=55.73 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++.-..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3567999999999999999999977654
No 223
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.16 E-value=0.0028 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+.....
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457999999999999999999987654
No 224
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.14 E-value=0.0067 Score=52.46 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+..|.|.|++|+||||+++.+.....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987653
No 225
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.14 E-value=0.0024 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 226
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.14 E-value=0.0028 Score=51.40 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|.|++|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 227
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.13 E-value=0.0038 Score=52.17 Aligned_cols=27 Identities=37% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.+|.|.|++|+||||+++.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999988664
No 228
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.12 E-value=0.0029 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+.....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999988765
No 229
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.12 E-value=0.0029 Score=55.97 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+.....
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 230
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.12 E-value=0.006 Score=56.43 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998773
No 231
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.11 E-value=0.0037 Score=55.92 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.2
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 139 KKDSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 139 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-+...+++|+|++|+|||||++.+..-.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34567899999999999999999998776
No 232
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.11 E-value=0.0036 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|.|.|++|+||||+++.+.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999988664
No 233
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0033 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|+|.|++|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 234
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.07 E-value=0.0038 Score=52.45 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+|+|.|++|+||||+++.+......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999987654
No 235
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.05 E-value=0.0041 Score=52.33 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+|+|.|++|+||||+++.+......
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999988764
No 236
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.05 E-value=0.0058 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.+|.|+|++|+||||+++.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988654
No 237
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.05 E-value=0.004 Score=57.06 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+++|+|++|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3569999999999999999999887654
No 238
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.04 E-value=0.0083 Score=50.07 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 129 SACNQIIEALKK-DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 129 ~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+..+..++.. +....+.|+||+|+||||+|..+++...
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555555543 2234799999999999999999988764
No 239
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.99 E-value=0.0041 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988664
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.99 E-value=0.011 Score=55.50 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.+.++.++|++|+||||++..++......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999998877643
No 241
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.99 E-value=0.0099 Score=55.73 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc---CCccEEEEEEecCC-CChhHHHHHHHHH--hC-----CCCCCCCH-H
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN---NIFDKVGIATVSQD-PSIINVQSELVKS--LG-----WALTEKDE-E 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~-~~~~~~~~~i~~~--l~-----~~~~~~~~-~ 208 (375)
...+.++|.|.+|+|||+|+.++.+..... ..| .++++-+.+. ....++++++... +. ....+.+. .
T Consensus 149 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~-~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 149 VRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDF-AVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp BTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCE-EEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred ccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCce-EEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 356788999999999999999998876541 112 4455555544 3455566655442 10 01111222 1
Q ss_pred -----HHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 209 -----DRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 209 -----~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
.....+.+++..-.++.+||++||+.
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11223445433335899999999975
No 242
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.99 E-value=0.0041 Score=54.40 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 243
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.98 E-value=0.0041 Score=51.40 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 244
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.98 E-value=0.0059 Score=51.48 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.....+|.|.|++|+||||+++.+.....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567999999999999999999988765
No 245
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.98 E-value=0.0039 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987653
No 246
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.97 E-value=0.0041 Score=52.90 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|.|.|++|+||||+++.+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988764
No 247
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.97 E-value=0.0044 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 248
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.96 E-value=0.0047 Score=50.52 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+|+|.|++|+||||+++.+......
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999887643
No 249
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.96 E-value=0.0042 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...|.|.|++|+||||+++.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987653
No 250
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.96 E-value=0.0023 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+|+|.|++|+||||+++.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999887753
No 251
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.95 E-value=0.0041 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3467999999999999999999987654
No 252
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.93 E-value=0.0037 Score=56.04 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4567999999999999999999977654
No 253
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.92 E-value=0.062 Score=50.75 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS 182 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 182 (375)
...++.|.|.+|+||||+|.+++......+ ..++|++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC
Confidence 457999999999999999999988776542 245555443
No 254
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.91 E-value=0.0045 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 255
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.90 E-value=0.0044 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|+|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987653
No 256
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.89 E-value=0.0053 Score=55.25 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcC
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN 171 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 171 (375)
-++.++|+|.|-||+||||++..+...+...+
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G 76 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG 76 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCC
Confidence 34678999999999999999999888776543
No 257
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.89 E-value=0.024 Score=50.48 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec-CCCChhHHHHHHHHHhCC
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS-QDPSIINVQSELVKSLGW 200 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~ 200 (375)
..+++++|++|+||||++..++......+ ..+.++... +.+.....+.......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v 154 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGV 154 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCe
Confidence 56899999999999999999988776532 233444332 222223334444555444
No 258
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.88 E-value=0.0049 Score=53.61 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|+|.|++|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.86 E-value=0.01 Score=48.49 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.++++|+|++|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887654
No 260
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.85 E-value=0.0045 Score=54.23 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..+++|+|++|+|||||++.+....
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999998765
No 261
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.81 E-value=0.0051 Score=58.50 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+|||||++.+....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3679999999999999999999887764
No 262
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.81 E-value=0.081 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..+|.|+|.+|+||||++..+......
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999876654
No 263
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.80 E-value=0.0049 Score=56.23 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.++.-..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 3567999999999999999999987654
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.80 E-value=0.0053 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..+|+|.|+.|+||||+++.+....
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998763
No 265
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.80 E-value=0.0054 Score=56.21 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||.+.+..-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3567999999999999999999987654
No 266
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.79 E-value=0.0055 Score=56.51 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+..-..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3467999999999999999999987654
No 267
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.78 E-value=0.0056 Score=56.17 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||.+.++.-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3567999999999999999999987654
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.77 E-value=0.0056 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|.|.|++|+||+|.|+.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998765
No 269
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.76 E-value=0.0061 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 270
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.76 E-value=0.0052 Score=53.37 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...|+|+|++|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988664
No 271
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.75 E-value=0.019 Score=54.47 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=54.6
Q ss_pred CCCcEEEEEcCCCchHHHH-HHHHHhhhhhc----CCcc-EEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTL-AKFVGNQLRQN----NIFD-KVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKD 206 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtL-a~~v~~~~~~~----~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~ 206 (375)
...+.++|.|.+|+|||+| +..+.+..... .+-+ .++++-+.+.. ...++.+.+...=.. ...+.+
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 4678899999999999999 55677766521 1223 35666676654 444555555542111 111111
Q ss_pred H-HH-----HHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 207 E-ED-----RADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 207 ~-~~-----~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
. .. ....+.+++.. +++.+||++||+.
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dslt 272 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCHH
Confidence 1 11 12234454434 5899999999974
No 272
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.74 E-value=0.012 Score=55.24 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=54.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc--------CCcc-EEEEEEecCCC-ChhHHHHHHHHH--hC------CCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN--------NIFD-KVGIATVSQDP-SIINVQSELVKS--LG------WAL 202 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~------~~~ 202 (375)
...+.++|.|.+|+|||+|+.++.+..... ++-+ .++++-+.+.. ...++.+++... +. ...
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 356788999999999999999998876531 1111 44555565543 455555554432 10 011
Q ss_pred CCCCHHH-----HHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 203 TEKDEED-----RADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 203 ~~~~~~~-----~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
++..... ....+.+++..-+++.+||++||+.
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1222211 1233445443345899999999974
No 273
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.73 E-value=0.0056 Score=55.96 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||.+.++.-..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 274
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.72 E-value=0.02 Score=54.40 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhhhhhcCCccE-EEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-HH
Q 038205 141 DSTKMVGLHGLGGVGKTTLA-KFVGNQLRQNNIFDK-VGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-ED 209 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~~ 209 (375)
...+.++|.|.+|+|||+|| ..+.+... .+. ++++-+.+.. ...++.+.+...=.. ...+.+. ..
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 46789999999999999995 57777653 342 4566666554 445555555542110 1111111 11
Q ss_pred -----HHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 210 -----RADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 210 -----~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
....+.+++.. +++.+||++||+.
T Consensus 249 ~~a~~~a~tiAEyfrd-~G~dVLli~DslT 277 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAY-SGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHHT-TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEeccHH
Confidence 12234454433 5899999999974
No 275
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.72 E-value=0.019 Score=54.37 Aligned_cols=89 Identities=21% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhhhhhcCCcc-EEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-HH
Q 038205 141 DSTKMVGLHGLGGVGKTTLA-KFVGNQLRQNNIFD-KVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-ED 209 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~~ 209 (375)
...+.++|.|.+|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+.+...=.. ...+.+. ..
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 45788999999999999995 57777653 33 24566666554 444555555542111 1111111 11
Q ss_pred -----HHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 210 -----RADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 210 -----~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
....+.+++.. +++.+||++||+.
T Consensus 236 ~~a~~~a~tiAEyfrd-~G~dVLl~~Dslt 264 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMY-KGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHT-TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEEecHH
Confidence 12334454434 5899999999974
No 276
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.72 E-value=0.0061 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||.+.++.-..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3567999999999999999999987654
No 277
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.70 E-value=0.0057 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.++|+|++|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.67 E-value=0.0068 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 279
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.67 E-value=0.0048 Score=56.48 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||.+.++.-..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3567999999999999999999987654
No 280
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.66 E-value=0.0098 Score=55.94 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHHhc--------------CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 124 FETTESACNQIIEALKK--------------DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.++.++.|...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46777777776655521 1245789999999999999999998775
No 281
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.65 E-value=0.0063 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988764
No 282
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.64 E-value=0.0043 Score=55.25 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|+|.|++|+||||+++.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 283
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.63 E-value=0.0067 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987654
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.62 E-value=0.014 Score=49.84 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+|.|.|++|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998875
No 285
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.61 E-value=0.0065 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 457999999999999999999987654
No 286
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.59 E-value=0.0076 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.+|+|++|+|||||+..++.-..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999876543
No 287
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.59 E-value=0.011 Score=63.57 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....|+|+|++|+|||||++.+.+-..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 3567999999999999999999977654
No 288
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.58 E-value=0.013 Score=52.09 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
....+++|.|++|+|||||+..++......
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 456799999999999999999998887643
No 289
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.57 E-value=0.007 Score=50.02 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
-.|+|+|++|+|||||++.+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999987543
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.56 E-value=0.0053 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998876
No 291
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.54 E-value=0.012 Score=55.56 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCC--ccEEEEEEecCCC-ChhHHHHHHHHHhCC-------CCCCCCH-H-
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI--FDKVGIATVSQDP-SIINVQSELVKSLGW-------ALTEKDE-E- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-~- 208 (375)
...+.++|.|.+|+|||+|+.++++.....+. =+.++++-+.+.. ...++.+++...=.. ...+.+. .
T Consensus 150 grGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 150 VRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp BTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 45678899999999999999999987764221 1245555555443 455666666543110 1111111 1
Q ss_pred ----HHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 209 ----DRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 209 ----~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
.....+.+++..-+++.+||++||+.
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11233444332235799999999964
No 292
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.54 E-value=0.0076 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.52 E-value=0.0076 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.|.|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988663
No 294
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.51 E-value=0.0077 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.+.+|+|.|++|+||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 295
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.0096 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|.|.|++|+||||+++.+.....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988764
No 296
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.50 E-value=0.0062 Score=57.34 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.+|.|+|++|+||||++..+......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887653
No 297
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.48 E-value=0.0077 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|+|.|++|+||||||..+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999988764
No 298
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.47 E-value=0.0081 Score=55.67 Aligned_cols=27 Identities=37% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+++|+|++|+|||||++.+..-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456799999999999999999998644
No 299
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.45 E-value=0.0091 Score=55.10 Aligned_cols=28 Identities=25% Similarity=0.099 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-+...+++|+|++|+|||||++.+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456799999999999999999999754
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.38 E-value=0.011 Score=53.34 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
...+|+|+|++|+||||++..++......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 35799999999999999999998887653
No 301
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.37 E-value=0.016 Score=56.34 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....+++|+|++|+|||||++.+......
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 35679999999999999999999988764
No 302
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.37 E-value=0.029 Score=48.13 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEE
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIAT 180 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 180 (375)
..+|.|.|++|+||||+++.+....... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 5799999999999999999999988754 344333333
No 303
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.36 E-value=0.03 Score=51.27 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=29.7
Q ss_pred HHHHHHHHh--cCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 131 CNQIIEALK--KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 131 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++.+. .+...+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555554 345779999999999999999998877643
No 304
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.35 E-value=0.013 Score=54.16 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=60.9
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHH--hCCCCCCCCHHHHHHHHHHH
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKS--LGWALTEKDEEDRADRLRLM 217 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~l~~~ 217 (375)
.....+++|+|++|+|||||++.+........ -..+.++..+-....... ..++.+ ++. ........+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~-~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~-----~~~~~~~~l~~- 204 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRA- 204 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS-CCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCSHHHHHH-
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC-CcEEEEecccHhhhhccC-ceEEEeeecCC-----CHHHHHHHHHH-
Confidence 34567999999999999999999988765320 012222221110000000 000000 010 11122344555
Q ss_pred hhhcCCCcEEEEEeCCCCcccccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 218 FSESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 218 ~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
.+...+-+|++|++.+.+.+..+.... ..|..|+.|++..+...
T Consensus 205 --~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 205 --ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp --HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred --HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 666677899999998655443322221 34667888988765433
No 305
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.34 E-value=0.0092 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|++|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 306
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.34 E-value=0.016 Score=54.30 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 133 QIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 133 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.+.+ .....+++|+|++|+|||||++.+.....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 343433 35567999999999999999999988765
No 307
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.34 E-value=0.0097 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...++|+|++|+|||||++.+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999887653
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.33 E-value=0.0094 Score=52.61 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...++.|+|++|+|||||+..+.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987554
No 309
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.29 E-value=0.04 Score=60.88 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=53.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHH
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRL 214 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l 214 (375)
...+.+.|+||+|+|||+||.++....... =..++|+.....++... ++.++.+.. ..+.++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 356899999999999999999998765533 22466776666555444 455553322 12233333333
Q ss_pred HHHhhhcCCCcEEEEEeCCC
Q 038205 215 RLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 215 ~~~~~~l~~kr~LlVlDdv~ 234 (375)
..+ .-..+..+||+|++.
T Consensus 1498 ~~l--vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DAL--ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHH--HHHTCCSEEEESCGG
T ss_pred HHH--HhcCCCCEEEEcChh
Confidence 331 113467799999984
No 310
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.29 E-value=0.0099 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.||.|+|||||+..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35899999999999999999987653
No 311
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.29 E-value=0.034 Score=46.93 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
..+|.+-|+.|+||||+++.+.......+ +..+....-+....+-..+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999887643 323333333332233344555554
No 312
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.28 E-value=0.014 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++|+|++|+|||||.+.+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998743
No 313
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.28 E-value=0.01 Score=54.13 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=27.2
Q ss_pred HhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 138 LKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 138 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.-....+++|+|++|+|||||++.+.+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44456789999999999999999999998763
No 314
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.27 E-value=0.0096 Score=49.74 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 126 TTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 126 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
++....+.+.+.......-.|+++|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444444444444455678999999999999998887543
No 315
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.27 E-value=0.0097 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|+|+.|+|||||+..+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999988654
No 316
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.26 E-value=0.012 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+|+|.|++|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999988754
No 317
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.21 E-value=0.026 Score=60.76 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|+.|+|||||++.+.....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3567999999999999999999987654
No 318
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.18 E-value=0.011 Score=52.60 Aligned_cols=26 Identities=35% Similarity=0.284 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.||.|+||||||..++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999987653
No 319
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.17 E-value=0.011 Score=55.54 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998765
No 320
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.011 Score=56.18 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....+++|+|++|+|||||++.+++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 4567999999999999999999987654
No 321
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.16 E-value=0.026 Score=47.94 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
......|.|.|+.|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345679999999999999999999988875
No 322
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.16 E-value=0.011 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|+||.|+|||||+..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999988654
No 323
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.14 E-value=0.011 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 324
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.12 E-value=0.0096 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 325
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.11 E-value=0.016 Score=52.72 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.....+++|+|++|+|||||.+.+......
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 356789999999999999999999876653
No 326
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.11 E-value=0.012 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..|+|+|++|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 327
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.07 E-value=0.016 Score=51.67 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
...+++++|++|+||||++..++......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999887653
No 328
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.06 E-value=0.085 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVG 164 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~ 164 (375)
.+.+.|.|+.|+||||+.....
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3689999999999998766554
No 329
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.06 E-value=0.035 Score=49.59 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=29.5
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec
Q 038205 139 KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS 182 (375)
Q Consensus 139 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 182 (375)
.....++|+|+|.||+||||++..++......+. .+.-+...
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~--~VlliD~D 78 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCD 78 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEES
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCC--eEEEEeCC
Confidence 3346789999999999999999999888775432 34444443
No 330
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.03 E-value=0.013 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+.|.|.|++|+||||||..+.....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 46789999999999999999987654
No 331
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.99 E-value=0.051 Score=51.63 Aligned_cols=44 Identities=32% Similarity=0.502 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 126 TTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 126 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
+..+.+..+...+..++ +.+.|.|++|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 44556666666666544 489999999999999999998877654
No 332
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.017 Score=49.61 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEec
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVS 182 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 182 (375)
...++.|.|++|+|||||+..++......+ ..++|++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcc
Confidence 457999999999999999988866554321 245666543
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.92 E-value=0.012 Score=54.05 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....++|+|++|+|||||++.+......
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4569999999999999999999887653
No 334
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.90 E-value=0.095 Score=49.63 Aligned_cols=90 Identities=22% Similarity=0.168 Sum_probs=52.8
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHHHHHhCCC-------CCCCCH-H--
Q 038205 141 DSTKMVGLHGLGGVGKTTLA-KFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSELVKSLGWA-------LTEKDE-E-- 208 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~-~-- 208 (375)
...+.++|.|..|+|||+|+ ..+.+... . -..++++-+.+.. ...++.+.+...=... ....+. .
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~~--~-dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQRD--S-GIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTSS--S-SCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhcc--C-CceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 45778999999999999995 56666432 1 1234667777654 4455556554431110 111111 1
Q ss_pred ---HHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 209 ---DRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 209 ---~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
.....+.+++.. +++.+||++||+.
T Consensus 237 ~a~~~a~tiAEyfrd-~G~dVLli~Dslt 264 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD-RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHH-TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHh-cCCCEEEEecChH
Confidence 112234444433 6899999999974
No 335
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.90 E-value=0.14 Score=49.21 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCC-hhHHHHHHHH----HhCC----------CCCCC
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPS-IINVQSELVK----SLGW----------ALTEK 205 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~----~l~~----------~~~~~ 205 (375)
...+.++|.|..|+|||+|+.++.+... -+.++++-+.+..+ ..++++++-+ ..+. ...+.
T Consensus 225 gkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~ 300 (588)
T 3mfy_A 225 AKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNM 300 (588)
T ss_dssp ETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTS
T ss_pred ccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCC
Confidence 4678999999999999999999876533 34667777776553 4445555422 1110 01111
Q ss_pred CHH------HHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 038205 206 DEE------DRADRLRLMFSESKSRKILVILDDVWK 235 (375)
Q Consensus 206 ~~~------~~~~~l~~~~~~l~~kr~LlVlDdv~~ 235 (375)
+.. .....+.+++.. .++.+||++|++..
T Consensus 301 p~~~r~~~~~~a~tiAEyfrd-~G~dVLl~~DsltR 335 (588)
T 3mfy_A 301 PVAAREASIYTGITIAEYFRD-MGYDVALMADSTSR 335 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCCEEEeecchHH
Confidence 111 112233443332 58999999999863
No 336
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.86 E-value=0.05 Score=45.86 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
..+|.|-|+.|+||||+++.+.......
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999888753
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.82 E-value=0.013 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..++++|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35789999999999999999998654
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.81 E-value=0.018 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..+.+|+|++|+||||+...++--.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999887543
No 339
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.81 E-value=0.015 Score=56.45 Aligned_cols=26 Identities=35% Similarity=0.693 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++|+|++|+|||||++.+....
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999998754
No 340
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.81 E-value=0.018 Score=54.36 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=27.1
Q ss_pred HhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 138 LKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 138 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.-....+++|+|++|+|||||++.+.+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 44456789999999999999999999988753
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.80 E-value=0.017 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
+.|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987653
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.80 E-value=0.034 Score=50.81 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+..+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999999987654
No 343
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.79 E-value=0.022 Score=54.10 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCchHHHHH-HHHHhhhhhcCCcc-EEEEEEecCCC-ChhHHHHHHHHHhCC--------CCCCCCH---
Q 038205 142 STKMVGLHGLGGVGKTTLA-KFVGNQLRQNNIFD-KVGIATVSQDP-SIINVQSELVKSLGW--------ALTEKDE--- 207 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~--- 207 (375)
..+.++|.|.+|+|||+|| ..+.+... .+ .++++-+.+.. ...++.+.+...=.. ..++...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4678899999999999995 57777653 23 34566666554 344444444332100 1111111
Q ss_pred --HHHHHHHHHHhhhcCCCcEEEEEeCCC
Q 038205 208 --EDRADRLRLMFSESKSRKILVILDDVW 234 (375)
Q Consensus 208 --~~~~~~l~~~~~~l~~kr~LlVlDdv~ 234 (375)
......+.+++.. +++.+||++||+.
T Consensus 238 ~a~~~a~tiAEyfrd-~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY-RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH-TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH-cCCcEEEEEecHH
Confidence 1223344554444 6899999999964
No 344
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.033 Score=45.48 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 132 NQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 132 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..+.+ +.....-.|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 34455668999999999999999998854
No 345
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.78 E-value=0.023 Score=50.77 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 131 CNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 131 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+++|.+.+. ..+++++|++|+|||||++.+. ...
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 445555443 4689999999999999999998 544
No 346
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.74 E-value=0.017 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..|+++|++|+|||||...+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 347
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.72 E-value=0.018 Score=55.92 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++|+|++|+|||||++.+....
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998754
No 348
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.70 E-value=0.016 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCCcE--EEEEcCCCchHHHHHHHHHhh
Q 038205 141 DSTKM--VGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 141 ~~~~v--i~I~G~~GiGKTtLa~~v~~~ 166 (375)
....+ ++|+|++|+|||||++.++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34557 999999999999999999765
No 349
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.02 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+..|.|.|..|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 350
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.66 E-value=0.091 Score=43.63 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=32.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
.|+|=|..|+||||.++.+.+.....+. .++...-+........++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~--~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK--KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--cEEEEECCCCCcHHHHHHHHhh
Confidence 5788899999999999999998876432 2333333333334444555443
No 351
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.64 E-value=0.032 Score=53.44 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHH--hcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 126 TTESACNQIIEAL--KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 126 gr~~~~~~l~~~l--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+.+..+.+.+.. ......+|.+.|++|+||||+++.+......
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3445555555544 2234578999999999999999999998874
No 352
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.019 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+++|+|++|+|||||++.+.....
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 467999999999999999999976543
No 353
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.60 E-value=0.027 Score=46.28 Aligned_cols=27 Identities=22% Similarity=0.036 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
..++.|+|+.|+||||++..+..+...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358899999999999999777666543
No 354
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.59 E-value=0.094 Score=57.22 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCC------CCCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWAL------TEKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 215 (375)
...++.|.|++|+||||||.+++....... ..++|++........ . ++.++... ...+.++....++
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 457999999999999999999988766432 246677665554432 2 55565431 2234444444444
Q ss_pred HHhhhcCCCcEEEEEeCCCCc
Q 038205 216 LMFSESKSRKILVILDDVWKE 236 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv~~~ 236 (375)
.+.. ..+.-+||+|.+...
T Consensus 804 ~lv~--~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 804 ALAR--SGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHH--HTCCSEEEESCSTTC
T ss_pred HHHH--ccCCCEEEEechhhh
Confidence 4221 235669999998643
No 355
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.58 E-value=0.02 Score=46.74 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998765
No 356
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.57 E-value=0.04 Score=48.01 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcC-C-CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 130 ACNQIIEALKKD-S-TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 130 ~~~~l~~~l~~~-~-~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...-+..|+... . ...+.++||+|+|||.+|..+++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344466666543 2 4579999999999999999998854
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.57 E-value=0.021 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
.+|.|.||.|+|||||+..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999987654
No 358
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.56 E-value=0.018 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999987653
No 359
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.55 E-value=0.034 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+++|+|++|+|||||++.+.....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 46899999999999999999987554
No 360
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.55 E-value=0.033 Score=48.32 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..++.+.|.+|+||||++..+.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999987765
No 361
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.55 E-value=0.0093 Score=49.87 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.....|+|+|++|+|||||.+.+....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999887654
No 362
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.019 Score=55.71 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+|||||++.++...+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4579999999999999999999987653
No 363
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.52 E-value=0.02 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999987653
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.51 E-value=0.027 Score=45.38 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 365
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.50 E-value=0.021 Score=55.48 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+++|+|++|+|||||++.++.....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4579999999999999999999987653
No 366
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.50 E-value=0.18 Score=43.81 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=28.3
Q ss_pred CCCcEEEEE-cCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCC
Q 038205 141 DSTKMVGLH-GLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQD 184 (375)
Q Consensus 141 ~~~~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 184 (375)
...++|+|+ |.||+||||+|..+..... .+ ..+.-+.....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~ 66 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQ 66 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEECCCC
Confidence 356788885 4689999999999998887 43 33444554433
No 367
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.49 E-value=0.047 Score=46.52 Aligned_cols=28 Identities=29% Similarity=0.595 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....|.|-|+.|+||||+++.+.+....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999988764
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.026 Score=46.31 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987653
No 369
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.021 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.....|+|+|.+|+|||||...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999988864
No 370
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.45 E-value=0.02 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 371
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.43 E-value=0.28 Score=56.12 Aligned_cols=136 Identities=14% Similarity=0.091 Sum_probs=70.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh-cC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSE-SK 222 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-l~ 222 (375)
+-+.++||+|+|||++|+.+..... .+ ....++.+...+...+...+...+........ ..... -.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g---------~~~~P~~~ 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKG---------LTLLPKSD 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTT---------EEEEEBSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCC---------ccccCCCC
Confidence 6788999999999999977765432 22 23456666666655555554444321100000 00001 14
Q ss_pred CCcEEEEEeCCCCc--c------cccccCCCC------CCCC------CCcEEEEEeCChh------HHhh-hCCCCccc
Q 038205 223 SRKILVILDDVWKE--L------DLETIGIPV------GDRD------NCCKILLTTRLQQ------VCYR-MGCDPRIK 275 (375)
Q Consensus 223 ~kr~LlVlDdv~~~--~------~~~~l~~~l------~~~~------~gs~IivTTr~~~------v~~~-~~~~~~~~ 275 (375)
++++++.+||+.-. + ..+.+...+ .... .+..+|.++.... +... ......+.
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEE
T ss_pred CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEE
Confidence 67899999996421 1 111111111 0011 1233444443221 1111 22235678
Q ss_pred CCCCChHHHHHHHHHHc
Q 038205 276 LDALDQAEGLDLLRKHA 292 (375)
Q Consensus 276 l~~L~~~e~~~Lf~~~~ 292 (375)
+...+.++-..+|....
T Consensus 1415 i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCCTTTHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 88888888888887664
No 372
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.42 E-value=0.024 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+++|+|++|+|||||++.+..-...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999999999999876653
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.41 E-value=0.02 Score=45.94 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999987643
No 374
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.39 E-value=0.022 Score=56.01 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhc-CC--cc-EEEEEEecCC----CChhHHH--------------HHHHHHhC
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQN-NI--FD-KVGIATVSQD----PSIINVQ--------------SELVKSLG 199 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~--f~-~~~wv~~~~~----~~~~~~~--------------~~i~~~l~ 199 (375)
...+++|+|++|+|||||++.+....... +. +. .+.++.-... .++.+.+ .+++..++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999876532 11 11 2333322111 1222221 22333333
Q ss_pred CCCC------CCCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc------ccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 200 WALT------EKDE-EDRADRLRLMFSESKSRKILVILDDVWKELD------LETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 200 ~~~~------~~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
.... ..+. +...-.+.. .+..++-+|+||+..+.-+ +..+...+. ...|..||++|++...+.
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAr---aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~~g~tvi~vsHd~~~~~ 536 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAA---TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMID 536 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHH---HHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHH
T ss_pred CchHhcCChhhCCHHHHHHHHHHH---HHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHH
Confidence 3211 1122 222233444 7777888999998765422 112111111 123568999999977665
Q ss_pred hh
Q 038205 267 RM 268 (375)
Q Consensus 267 ~~ 268 (375)
.+
T Consensus 537 ~~ 538 (607)
T 3bk7_A 537 YV 538 (607)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 375
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.35 E-value=0.023 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++|+|++|+|||||++.+.....
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3567999999999999999999987654
No 376
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.34 E-value=0.15 Score=49.04 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHh-cCCCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC-ChhHHHHHH
Q 038205 134 IIEALK-KDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP-SIINVQSEL 194 (375)
Q Consensus 134 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 194 (375)
.++.|. -...+.++|.|..|+|||+|+.++.+... -+.++++-+.+.. ...++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 334443 24678999999999999999999887643 3456666666553 344444443
No 377
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.34 E-value=0.022 Score=50.83 Aligned_cols=35 Identities=34% Similarity=0.560 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 131 CNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 131 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
++++..++. ..+++|+|++|+|||||.+.+.....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccccc
Confidence 445555443 36899999999999999999987655
No 378
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.34 E-value=0.024 Score=47.83 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999987754
No 379
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.33 E-value=0.023 Score=55.93 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...+++|+|++|+|||||++.+....
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45799999999999999999997654
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.32 E-value=0.023 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-|+++|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999987653
No 381
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.31 E-value=0.018 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
-|+|+|++|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999997754
No 382
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.30 E-value=0.027 Score=47.98 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..++|.|++|+||||+++.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 383
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.27 E-value=0.025 Score=44.84 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.|+++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999887543
No 384
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.26 E-value=0.029 Score=47.08 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....|.|+|++|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988754
No 385
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.23 E-value=0.16 Score=56.31 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
...++.|+|++|+||||||.+++......+ ..++|++.....+.. .++.++.+.+ ..+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 467999999999999999999988776432 356787776665543 2556654322 233444444444
Q ss_pred HHhhhcCCCcEEEEEeCCC
Q 038205 216 LMFSESKSRKILVILDDVW 234 (375)
Q Consensus 216 ~~~~~l~~kr~LlVlDdv~ 234 (375)
.+.. ..+.-++|+|.+.
T Consensus 455 ~lv~--~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALAR--SGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHH--HTCCSEEEESCGG
T ss_pred HHHH--hcCCcEEEECCHH
Confidence 3211 2356699999875
No 386
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.21 E-value=0.025 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.|+++|.+|+|||||...+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999987654
No 387
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.025 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
-.|.++|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 388
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.20 E-value=0.024 Score=45.22 Aligned_cols=24 Identities=38% Similarity=0.256 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999987653
No 389
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.025 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987654
No 390
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.18 E-value=0.026 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998764
No 391
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.17 E-value=0.028 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-|+++|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999987643
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.17 E-value=0.03 Score=46.40 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
....|+++|.+|+|||||...+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999875
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.16 E-value=0.026 Score=45.62 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999999887653
No 394
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.16 E-value=0.026 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999997653
No 395
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.13 E-value=0.025 Score=45.14 Aligned_cols=21 Identities=52% Similarity=0.615 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~ 165 (375)
-|+|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999864
No 396
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.027 Score=55.33 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=64.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhcCC--cc--EEEEEEecCCC------Chh--------------HHHHHHHHHhC
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQNNI--FD--KVGIATVSQDP------SII--------------NVQSELVKSLG 199 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~--~~~wv~~~~~~------~~~--------------~~~~~i~~~l~ 199 (375)
.+++|+|++|+|||||++.+....+...- .. .+.++ ++.. +.. ....++++.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 67999999999999999999887653211 00 12222 2211 111 12223334443
Q ss_pred CCC------CCCCH-HHHHHHHHHHhhhcCCCcEEEEEeCCCCccc------ccccCCCCCCCCCCcEEEEEeCChhHHh
Q 038205 200 WAL------TEKDE-EDRADRLRLMFSESKSRKILVILDDVWKELD------LETIGIPVGDRDNCCKILLTTRLQQVCY 266 (375)
Q Consensus 200 ~~~------~~~~~-~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~IivTTr~~~v~~ 266 (375)
... ...+. +...-.+.. .|..++-+|+||+....-+ +..+...+. ...|..||++|++...+.
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAr---aL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~-~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVL---ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI-LHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHH---HTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHH-HHHTCEEEEECSCHHHHH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHH---HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHH
Confidence 211 11222 222334444 7888888999998765422 111111111 123678999999977765
Q ss_pred hh
Q 038205 267 RM 268 (375)
Q Consensus 267 ~~ 268 (375)
.+
T Consensus 533 ~~ 534 (608)
T 3j16_B 533 YL 534 (608)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 397
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.11 E-value=0.027 Score=45.37 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||...+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987643
No 398
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.10 E-value=0.018 Score=50.34 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999988763
No 399
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.07 E-value=0.03 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 368999999999999999987643
No 400
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.07 E-value=0.043 Score=46.53 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.|.+.|+||+||||++..+.......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47889999999999999988887654
No 401
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.07 E-value=0.026 Score=44.93 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.|+++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999988653
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.07 E-value=0.026 Score=46.00 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999987653
No 403
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.04 E-value=0.029 Score=45.91 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999998876643
No 404
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.03 E-value=0.03 Score=45.93 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....|+|+|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987653
No 405
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.03 E-value=0.029 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999987543
No 406
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.01 E-value=0.028 Score=45.35 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998765
No 407
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.01 E-value=0.022 Score=56.03 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++|+|++|+|||||++.+.....
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3567999999999999999999977654
No 408
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.95 E-value=0.037 Score=48.25 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
++|+|.|.||+||||++..+.......
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999998887743
No 409
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.95 E-value=0.055 Score=49.22 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 140 KDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 140 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+..+|+|+|++|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999987654
No 410
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.94 E-value=0.03 Score=46.04 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 411
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.91 E-value=0.032 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
-.|+++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 412
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.89 E-value=0.035 Score=45.41 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|+|.+|+|||||+..+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578999999999999999987764
No 413
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.84 E-value=0.026 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+...+++|+|++|+|||||++.+..-..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3567999999999999999999987654
No 414
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.84 E-value=0.032 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
--|.|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999997776543
No 415
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.82 E-value=0.034 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998654
No 416
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.82 E-value=0.035 Score=45.18 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.....|+++|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999998654
No 417
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.82 E-value=0.032 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.|+|+|.+|+|||||+..+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 418
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.81 E-value=0.039 Score=46.04 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988775
No 419
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.81 E-value=0.032 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3468999999999999998887653
No 420
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.80 E-value=0.028 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.175 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
-|+|+|++|+|||||++.++....
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 369999999999999999987543
No 421
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.79 E-value=0.02 Score=51.21 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+++|+|++|+|||||.+.+.....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 46999999999999999999987554
No 422
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.78 E-value=0.03 Score=53.85 Aligned_cols=26 Identities=19% Similarity=0.009 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...++|+|++|+||||+++.+.....
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999988765
No 423
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.76 E-value=0.032 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|.|+|.+|+|||||+..+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987654
No 424
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.76 E-value=0.029 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.|+|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999999987653
No 425
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.75 E-value=0.065 Score=44.99 Aligned_cols=110 Identities=10% Similarity=0.017 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALTEKDEEDRADRLRLMFSES 221 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~l 221 (375)
...+..++|+-|.||||.+.....+....+ ....++-.. .+ ...-...+.+.++........... .++++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g-~kVli~k~~-~d--~R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAK-QHAIVFKPC-ID--NRYSEEDVVSHNGLKVKAVPVSAS----KDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEECC--------------------CCEEECSSG----GGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec-cC--CcchHHHHHhhcCCeeEEeecCCH----HHHHHHH
Confidence 356889999999999998888877776532 233332211 11 111112344444332211000000 1222244
Q ss_pred CCCcEEEEEeCCCCc--ccccccCCCCCCCCCCcEEEEEeCCh
Q 038205 222 KSRKILVILDDVWKE--LDLETIGIPVGDRDNCCKILLTTRLQ 262 (375)
Q Consensus 222 ~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTr~~ 262 (375)
.++--+|++|++.-. +.++.+ ..+. ..|..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHH--HTTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHh--hCCCEEEEEeccc
Confidence 443449999998642 333333 2211 1367899999864
No 426
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.75 E-value=0.042 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..-+.|.|++|+||||||..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467899999999999999998874
No 427
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.75 E-value=0.035 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|.|+|.+|+|||||+..+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999987654
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.74 E-value=0.029 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
--|.++|.+|+|||||+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998764
No 429
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.73 E-value=0.035 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988643
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.72 E-value=0.029 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987643
No 431
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.72 E-value=0.033 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
-.|+|+|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998754
No 432
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.70 E-value=0.034 Score=45.07 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|.|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999988653
No 433
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.69 E-value=0.1 Score=47.19 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=25.9
Q ss_pred HhcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 138 LKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 138 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+.+...+++.+.|.||+||||+|..++.....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 34455678899999999999999998877654
No 434
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.68 E-value=0.036 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.295 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
--|+|+|.+|+|||||+..+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999987643
No 435
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.67 E-value=0.086 Score=45.14 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCC
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDP 185 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 185 (375)
.|+|.|.||+||||++..+.......+ ..+.-+......
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~ 40 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDS 40 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTS
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCc
Confidence 366799999999999999998887543 234445444333
No 436
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.67 E-value=0.048 Score=48.20 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhhhc
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLRQN 170 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 170 (375)
.++|+|.|.||+||||++..+.......
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999998887654
No 437
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.63 E-value=0.022 Score=55.82 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+....++|+|++|+|||||++.+.....
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3567999999999999999999876554
No 438
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.62 E-value=0.038 Score=45.58 Aligned_cols=22 Identities=45% Similarity=0.515 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
-.|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998875
No 439
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.62 E-value=0.036 Score=44.92 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..|.|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999987653
No 440
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.62 E-value=0.022 Score=56.03 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
-+.++|++|+|||+||+.+.+...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 589999999999999999987653
No 441
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.61 E-value=0.036 Score=44.91 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.|+++|.+|+|||||...+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988754
No 442
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.60 E-value=0.037 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999765
No 443
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.60 E-value=0.036 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|.|+|.+|+|||||+..+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999987653
No 444
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.58 E-value=0.044 Score=52.90 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|.++|++|+||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988765
No 445
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.56 E-value=0.12 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.|+|+|.+|+|||||...+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988765
No 446
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.55 E-value=0.043 Score=45.85 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..+..|+|++|+||||+...++--.-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999998865443
No 447
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.55 E-value=0.038 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.140 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.-.|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 448
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.55 E-value=0.037 Score=45.80 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|+|.+|+|||||+..+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999987553
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.55 E-value=0.05 Score=45.94 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
....|.+-|+.|+||||+++.+.+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999998864
No 450
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.54 E-value=0.06 Score=46.11 Aligned_cols=25 Identities=36% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...++.|.|++|+|||++|.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3579999999999999999987654
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.52 E-value=0.03 Score=46.29 Aligned_cols=22 Identities=50% Similarity=0.522 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVG 164 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~ 164 (375)
.-.|+|+|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 452
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.041 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468999999999999999988754
No 453
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.51 E-value=0.039 Score=45.76 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999987654
No 454
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.041 Score=44.37 Aligned_cols=24 Identities=38% Similarity=0.264 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+++|.+|+|||||...+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987654
No 455
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.49 E-value=0.1 Score=47.50 Aligned_cols=31 Identities=45% Similarity=0.547 Sum_probs=25.5
Q ss_pred HhcCCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 138 LKKDSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 138 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
+.....+++.+.|.||+||||+|..++....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 4455568999999999999999998876665
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.49 E-value=0.039 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3578999999999999999987543
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.47 E-value=0.14 Score=55.82 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHHHhCCCCC------CCCHHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWALT------EKDEEDRADRLR 215 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 215 (375)
..++|-|+|+.|+||||||.++....... =...+|+...+..+..- ++.++.+.+ +.+.++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 46899999999999999999988665433 34567777776666543 777776543 233344444444
Q ss_pred HHhhhcC-CCcEEEEEeCCCC
Q 038205 216 LMFSESK-SRKILVILDDVWK 235 (375)
Q Consensus 216 ~~~~~l~-~kr~LlVlDdv~~ 235 (375)
. .++ +..-++|+|.|..
T Consensus 1503 ~---~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 A---LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp H---HHHHTCCSEEEESCSTT
T ss_pred H---HHHcCCCCEEEEccHHh
Confidence 4 332 3555999998753
No 458
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.46 E-value=0.37 Score=46.17 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
...++.|.|++|+|||||+.+++....... =..++|++.. .+...+...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E--~s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLE--ESVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESS--SCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEecc--CCHHHHHHHHH
Confidence 457999999999999999999987765431 1245666543 34455555443
No 459
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.041 Score=45.81 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988764
No 460
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.44 E-value=0.042 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468999999999999999998764
No 461
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.44 E-value=0.048 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
..--|+|+|.+|+|||||+..+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998765
No 462
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.44 E-value=0.031 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHh
Q 038205 141 DSTKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 141 ~~~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
...-.|+|+|.+|+|||||+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999864
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.042 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999987654
No 464
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.40 E-value=0.041 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFV 163 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v 163 (375)
...+++|+|++|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
No 465
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.39 E-value=0.04 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-.|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998753
No 466
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.38 E-value=0.046 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
++.+|+|++|+|||||...++.-
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 48999999999999999999853
No 467
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.38 E-value=0.042 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999987654
No 468
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.35 E-value=0.042 Score=47.03 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|+|+|.+|+|||||...+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 356799999999999999999886543
No 469
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.35 E-value=0.047 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGN 165 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~ 165 (375)
.++.+|+|++|+|||||+..++-
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998743
No 470
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.31 E-value=0.044 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
--|+|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987654
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.31 E-value=0.046 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||...+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987643
No 472
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.30 E-value=0.044 Score=45.35 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|+|.+|+|||||+..+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4578999999999999999988654
No 473
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.26 E-value=0.046 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
--|.|+|.+|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999987643
No 474
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.046 Score=44.91 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 457899999999999999998764
No 475
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.25 E-value=0.045 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999988654
No 476
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.24 E-value=0.15 Score=46.17 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhhcCCccEEEEEEecCCCChhHHHHHHHH
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVK 196 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 196 (375)
...++.|.|.+|+||||||..++...... =..++|++. ..+...+...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHH
Confidence 45799999999999999999998876642 134555544 3444555555443
No 477
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.23 E-value=0.052 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
....|+|+|.+|+|||||+..+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998765
No 478
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.23 E-value=0.18 Score=43.16 Aligned_cols=23 Identities=30% Similarity=0.135 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-+.|+|+.|.|||.++..+....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 37889999999999998877654
No 479
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.23 E-value=0.044 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
...|+|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999987654
No 480
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.22 E-value=0.096 Score=49.37 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHHHhcC-----------CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 124 FETTESACNQIIEALKKD-----------STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 124 ~~gr~~~~~~l~~~l~~~-----------~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|.++.++.|.+.+... +...|+|+|++|+|||||...+....
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 346677777777766321 13479999999999999999998764
No 481
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.22 E-value=0.048 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-.|.++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987754
No 482
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.20 E-value=0.14 Score=50.85 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCchHHHHHHH-HHhhhhhcCCccEEEEEEecCCCChhHHHHHHH
Q 038205 130 ACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKF-VGNQLRQNNIFDKVGIATVSQDPSIINVQSELV 195 (375)
Q Consensus 130 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~-v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 195 (375)
..+.+...|... .+..|.||+|.|||+++.. +.+..+. ...+.++...+..+..+...+.
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence 344454445432 4788999999999975544 4443332 2346666666655556655554
No 483
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.19 E-value=0.21 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.|+|+|.+|+|||||...+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987754
No 484
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.19 E-value=0.05 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998754
No 485
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.19 E-value=0.061 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
...+|.|.|++|+||||+|+.+......
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999988764
No 486
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.18 E-value=0.044 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
.--|.++|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999977664
No 487
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.18 E-value=0.044 Score=45.41 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.--|+|+|.+|+|||||+..+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987543
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.18 E-value=0.045 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
++.|+|.+|+||||+|..+...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999998865
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.16 E-value=0.1 Score=50.66 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH--hcCCCcEEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 128 ESACNQIIEAL--KKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 128 ~~~~~~l~~~l--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
.+....+.+.. ......+|.+.|++|+||||+++.+......
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34444444444 2234578999999999999999999887654
No 490
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.14 E-value=0.047 Score=45.13 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
....|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34678999999999999999987643
No 491
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.11 E-value=0.065 Score=45.50 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 142 STKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 142 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
...+|.|.|+.|+||||+++.+.....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 356999999999999999999988765
No 492
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.11 E-value=0.055 Score=47.39 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
..|+++|.+|+|||||...+....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999987653
No 493
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.10 E-value=0.0094 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhhh
Q 038205 145 MVGLHGLGGVGKTTLAKFVGNQLRQ 169 (375)
Q Consensus 145 vi~I~G~~GiGKTtLa~~v~~~~~~ 169 (375)
+++|+|++|+|||||+..++.-...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 5578999999999999999887654
No 494
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.10 E-value=0.047 Score=45.10 Aligned_cols=25 Identities=32% Similarity=0.210 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhhh
Q 038205 143 TKMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 143 ~~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
.-.|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999887653
No 495
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.049 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987653
No 496
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.06 E-value=0.05 Score=45.13 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987643
No 497
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.02 E-value=0.056 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQ 166 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~ 166 (375)
++.+|+|++|+|||||...++..
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999988643
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.02 E-value=0.027 Score=57.46 Aligned_cols=47 Identities=28% Similarity=0.310 Sum_probs=34.9
Q ss_pred CCccchHHHHHHHHHHHhc-------------CCCcEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 122 SSFETTESACNQIIEALKK-------------DSTKMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 122 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
....|.++..+.|.+.+.. .....+.++|++|+||||||+.+++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 3455666677777665531 1345688999999999999999999875
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.01 E-value=0.18 Score=42.10 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQLR 168 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~~ 168 (375)
..|+|=|..|+||||+++.+.....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999885
No 500
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.97 E-value=0.043 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhhh
Q 038205 144 KMVGLHGLGGVGKTTLAKFVGNQL 167 (375)
Q Consensus 144 ~vi~I~G~~GiGKTtLa~~v~~~~ 167 (375)
-.|+|+|.+|+|||||+..+.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999987653
Done!