BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038206
         (614 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/606 (69%), Positives = 489/606 (80%), Gaps = 6/606 (0%)

Query: 9   GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
            PP+   H+ S      N  SF +H  LL  L  C  +SQLKQ+HAQ +RT       T 
Sbjct: 8   APPSHLPHAIS------NSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTF 61

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
            +YSRI+HF+S  DL YAFRVF+QIENPNSF WN LIRACARS D K  AI L+ RM+EQ
Sbjct: 62  FLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQ 121

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G+V+ DKHTFPF LKACAYLFA S+G+Q HA I K G  SDVYINNSL+HFYA+C  LD 
Sbjct: 122 GSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDF 181

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248
           A  VFD M ERSLVSWNV+IDAFV+FGEFD+AL LF  MQ  FEPDGYT QSI +ACAG+
Sbjct: 182 AKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGM 241

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
            +LSLGMWAH ++L+  D   V DVL+N SL+DMYCKCGSL++A Q+F  MPKRD+TSWN
Sbjct: 242 GSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWN 301

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+ILGF+ HG   AAL+YF  +V  E   PN+ITFVGVLSACNH G+VSEGR YFDVM+ 
Sbjct: 302 SMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVT 361

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           EY I P LEHYGCLVDLLARAG IDEAL +VSNMPM+PD VIWRSLLDACCK++A V LS
Sbjct: 362 EYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELS 421

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           EE+A++V+E+EGG+CSGVYVLLSRVYASA RWNDVG+VRKLMTDKGV KEPGCSSIEIDG
Sbjct: 422 EEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDG 481

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
           +AHEFFAGDTSHPQT++IY  LD+I+E+++  GY+PD SQA MVDE  DGKQ SLRLHSE
Sbjct: 482 VAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSE 541

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           RLAIA G+L  KPGMPIR+FKNLRVC +CH+VTKLISR+FN EIIVRDR RFHHFKDG+C
Sbjct: 542 RLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGAC 601

Query: 609 SCMDYW 614
           SCMDYW
Sbjct: 602 SCMDYW 607


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/606 (68%), Positives = 481/606 (79%), Gaps = 20/606 (3%)

Query: 9   GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
            PP+   H+ S      N  SF +H  LL  L  C  +SQLKQ+HAQ +RT       T 
Sbjct: 8   APPSHLPHAIS------NSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTF 61

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
            +YSRI+HF+S  DL YAFRVF+QIENPNSF WN LIRACARS D K  AI L+ RM+EQ
Sbjct: 62  FLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQ 121

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G+V+ DKHTFPF LKACAYLFA S+G+Q HA I K G  SDVYINNSL+HFYA+C  LD 
Sbjct: 122 GSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDF 181

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248
           A  VFD M ERSLVSWNV+IDAFV+FGEFD+AL LF  MQ  FEPDGYT QSI +ACAG+
Sbjct: 182 AKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGM 241

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
            +LSLG              +V DVL+N SL+DMYCKCGSL++A Q+F  MPKRD+TSWN
Sbjct: 242 GSLSLG--------------IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWN 287

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+ILGF+ HG   AAL+YF  +V  E   PN+ITFVGVLSACNH G+VSEGR YFDVM+ 
Sbjct: 288 SMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVT 347

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           EY I P LEHYGCLVDLLARAG IDEAL +VSNMPM+PD VIWRSLLDACCK++A V LS
Sbjct: 348 EYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELS 407

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           EE+A++V+E+EGG+CSGVYVLLSRVYASA RWNDVG+VRKLMTDKGV KEPGCSSIEIDG
Sbjct: 408 EEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDG 467

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
           +AHEFFAGDTSHPQT++IY  LD+I+E+++  GY+PD SQA MVDE  DGKQ SLRLHSE
Sbjct: 468 VAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSE 527

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           RLAIA G+L  KPGMPIR+FKNLRVC +CH+VTKLISR+FN EIIVRDR RFHHFKDG+C
Sbjct: 528 RLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGAC 587

Query: 609 SCMDYW 614
           SCMDYW
Sbjct: 588 SCMDYW 593


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/618 (67%), Positives = 496/618 (80%), Gaps = 15/618 (2%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           M + ++Q  PP   T   +           N+++ LL  L ECK MSQLKQIHA +LR+ 
Sbjct: 1   MVLGVIQSPPPQIVTSKPT-----------NHYNLLLQHLNECKDMSQLKQIHALSLRST 49

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQA 118
           LP    TL +YSRI+HF+S  DL+YA+RVF Q++NPNSF WN LIRACA+S  V  K +A
Sbjct: 50  LPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREA 109

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           I+L+  M+++ +  PD HTFPF LKACAYLFA  +GKQAHAH+ K G  SDVYINNSLIH
Sbjct: 110 ILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIH 169

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYT 237
           FYASCG L+ A  VFD M +RSLVSWN MIDAFV FGEF++AL+LF + Q  F EPDGYT
Sbjct: 170 FYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYT 229

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVF 296
            QS+ +ACAGL  LSLGMWAHA++LR+C  S+  D VLVNNSL+DMYCKCGSLDIA Q+F
Sbjct: 230 IQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIF 289

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           E M K D+TSWNS+ILGFA+HG+ E AL+ F+R++    F PNSITFVGVLSACNHR MV
Sbjct: 290 EGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMV 349

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
           +EGR YFD+M+NEY I P LEHYGCLVD+LARAG IDEAL LV++MPMKPD VIWRSLLD
Sbjct: 350 NEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLD 409

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           +CCKK+ASV LSE +A+Q++ESE    SGVYVLLSRVYASA RWNDVGLVRKLMT+ G+ 
Sbjct: 410 SCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGIL 469

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           KEPGCS IE+DG+ HEFFAGDTSHPQTK+IY  L++++E++ S GY PDYSQA MVDEL+
Sbjct: 470 KEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELN 529

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
             K+ SLRLHSERLAIALG+LNLKPGMPIR+FKNLRVC DCH+VT LIS IFNVEIIVRD
Sbjct: 530 TSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRD 589

Query: 597 RARFHHFKDGSCSCMDYW 614
           R RFHHFKDGSCSCMDYW
Sbjct: 590 RVRFHHFKDGSCSCMDYW 607


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/600 (68%), Positives = 489/600 (81%), Gaps = 1/600 (0%)

Query: 15  THSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRI 74
           T+S S+    + E S  + S  L  LT+C  +S+LKQIHAQA+R      + +L +YSRI
Sbjct: 7   TNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRN-FSTHNSSLFLYSRI 65

Query: 75  IHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +H +S  D DYA RVF QI+NPNSF WNTLI ACARS+D K QAI +F RM+E+G+V PD
Sbjct: 66  LHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPD 125

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           KHTFPF LKACAY+FA S+G+QAHA IFK GL  DVY+ NSLIH YASCG L +A KVF+
Sbjct: 126 KHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFE 185

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
            M  RSLVSWNVMIDA+VQ G F++ALKLF  MQ  FEPDGYT QSI SACAG+  LSLG
Sbjct: 186 KMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQNSFEPDGYTMQSIVSACAGIGALSLG 245

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
           MWAHAY+LR    ++  DVL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL  
Sbjct: 246 MWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILAL 305

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A+HGR +AAL+ F RLV  E F PNS+TFVGVLSACNH GMV++GR YFD+M+N+Y I P
Sbjct: 306 AMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEP 365

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            LEHYGCLVDLL+R+G IDEAL LV+NM +KPDAVIWRSLLDAC K++A V LSEEVA +
Sbjct: 366 RLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFK 425

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           +++SE  I SGVYV+LSRVYASAR+WNDVG++RK+MTD GVTKEPGCSSIEIDGI+HEFF
Sbjct: 426 ILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFF 485

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
           AGDTSHP+ K+IYG +DLI+EKL+ RGY+PD SQA MVDE D+ KQ SL+LHSERLAIA 
Sbjct: 486 AGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAF 545

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G+LNLKPG P+R+FKNLRVC DCH+VTKLIS IFNVEII+RDR RFHHFK G CSCMD+W
Sbjct: 546 GLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
           N+H  + S    C  MSQLKQ+HA  LRT  P++  TL +Y +I+  +S F+D++YAFRV
Sbjct: 103 NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 162

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  IEN +SF WNTLIRACA  V  K +A +L+++M+E+G   PDKHTFPF LKACAY+F
Sbjct: 163 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 222

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            FS+GKQ H  I K G   DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 223 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 282

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A V+FGE+DSAL+LFR MQ  FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD  +
Sbjct: 283 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 342

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 343 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 402

Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           +V   E+  PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 403 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 462

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
           AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I      ES  G 
Sbjct: 463 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 522

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
           CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 523 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 582

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
           TKQIY  L +ID++L+S GY PD SQA +VD  +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 583 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 642

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 643 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
           N+H  + S    C  MSQLKQ+HA  LRT  P++  TL +Y +I+  +S F+D++YAFRV
Sbjct: 46  NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 105

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  IEN +SF WNTLIRACA  V  K +A +L+++M+E+G   PDKHTFPF LKACAY+F
Sbjct: 106 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 165

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            FS+GKQ H  I K G   DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 166 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 225

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A V+FGE+DSAL+LFR MQ  FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD  +
Sbjct: 226 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 285

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 286 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 345

Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           +V   E+  PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 346 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 405

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
           AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I      ES  G 
Sbjct: 406 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 465

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
           CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 466 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 525

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
           TKQIY  L +ID++L+S GY PD SQA +VD  +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 526 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 585

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 586 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
           N+H  + S    C  MSQLKQ+HA  LRT  P++  TL +Y +I+  +S F+D++YAFRV
Sbjct: 37  NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 96

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  IEN +SF WNTLIRACA  V  K +A +L+++M+E+G   PDKHTFPF LKACAY+F
Sbjct: 97  FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 156

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            FS+GKQ H  I K G   DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 157 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 216

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A V+FGE+DSAL+LFR MQ  FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD  +
Sbjct: 217 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 276

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 277 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 336

Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           +V   E+  PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 337 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 396

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
           AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I      ES  G 
Sbjct: 397 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 456

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
           CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 457 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 516

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
           TKQIY  L +ID++L+S GY PD SQA +VD  +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 517 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 576

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 577 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/584 (67%), Positives = 466/584 (79%), Gaps = 9/584 (1%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRVFYQIENPNS 98
           L  C  MSQLKQ+HA  LRT  P++  TL +Y +I+  +S F+D++YAFRVF  IEN +S
Sbjct: 32  LQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 91

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
           F WNTLIRACA  V  K +A +L+++M+E+G   PDKHTFPF LKACAY+F FS+GKQ H
Sbjct: 92  FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 151

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
             I K G   DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MIDA V+FGE+D
Sbjct: 152 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 211

Query: 219 SALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           SAL+LFR MQ  FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD  +  DVLV NS
Sbjct: 212 SALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 271

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV-VEESFS 337
           LI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR+V   E+  
Sbjct: 272 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVR 331

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+ARAG I EA+ 
Sbjct: 332 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAID 391

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGICSGVYVLLS 451
           +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I      ES  G CSG YVLLS
Sbjct: 392 MVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLS 451

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
           RVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQTKQIY  L 
Sbjct: 452 RVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLK 511

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           +ID++L+S GY PD SQA +VD  +DG K+ SLRLHSERLAIA G++NL P  PIR+FKN
Sbjct: 512 VIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKN 571

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 572 LRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/578 (66%), Positives = 458/578 (79%), Gaps = 8/578 (1%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFA--DLDYAFRVFYQIENPNSFTW 101
           +M QLKQIHAQ LRT        + +Y+ I+ H++S    +L YA RVF+   NPNSF W
Sbjct: 34  TMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMW 93

Query: 102 NTLIRACARSVDA--KPQAIVLFQRMI--EQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           NTLIR  ARS +   K +A+ L++ M+  E+   +PD HTFP  LKACAY F+  +GKQ 
Sbjct: 94  NTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQV 153

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           HAH+ K G  SD YI NSL+HFYA+CG LDLA K+F  M ER+ VSWN+MID++ + G F
Sbjct: 154 HAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIF 213

Query: 218 DSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           D+AL++F  MQ + +PDGYT QS+ SACAGL  LSLG+W HAYIL+ CD ++V DVLVN 
Sbjct: 214 DTALRMFGEMQRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNT 273

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
            L+DMYCK G L+IA+QVFESM  RDL +WNS+ILG A+HG A+AAL Y+ R+V  E   
Sbjct: 274 CLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIV 333

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           PNSITFVGVLSACNHRGMV EG  +FD+M  EYN+ P LEHYGCLVDL ARAG I+EAL+
Sbjct: 334 PNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALN 393

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-SGVYVLLSRVYAS 456
           LVS M +KPDAVIWRSLLDACCK++ASV LSEE+AKQV ESEG +C SGVYVLLS+VYAS
Sbjct: 394 LVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYAS 453

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RWNDVGL+RKLM++KGVTKEPGCS IEIDG+ HEFFAGDT+HP+++ IY  +  I+EK
Sbjct: 454 ACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEK 513

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           L+S GY PDYS A MVDE++DGK ++LRLHSERLAIA GILN KP +PIRVFKNLRVC D
Sbjct: 514 LESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCND 573

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH VTKLISRI+NVEIIVRDRARFHHFKDG+CSCMDYW
Sbjct: 574 CHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/593 (64%), Positives = 458/593 (77%), Gaps = 20/593 (3%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
           N+H  +LS    C  MSQLKQ+HA  LRT  P +  TL +Y +I+  +S F+D++YAFRV
Sbjct: 27  NHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRV 86

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  IEN +SF WNTLIRACA  V  K +A +L+++M+E+G   PDKHTFPF LKACAY+F
Sbjct: 87  FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIF 146

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
             S+GKQ H  I K G   DVY+NN LIHFY SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 147 GLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMID 206

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A V+ GE+DSAL+LFR MQ  FEPDGYT QS+ SACAGL +LSLG W+H ++LR+CD  +
Sbjct: 207 ALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDV 266

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DVL+ NSLI+MYCKCGSL +A QVF+ M K DL SWN++ILGFA HG+AE A+  FD 
Sbjct: 267 AMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDC 326

Query: 330 LVVE-ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           +V E ++  PNS+TFV +L ACNHRGMV++GR YFD+M+ EY I P LEHYGC++DLLAR
Sbjct: 327 MVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLAR 386

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
           AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I      +S    
Sbjct: 387 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSN 446

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
           CSG YVLLSRVYASA RWNDVG+VRKLM+D G+ KEPGCSSIEI+GI++EFFAGDTSHPQ
Sbjct: 447 CSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQ 506

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD-GKQSSLRLHSERLAIALGILNLKP 561
           TKQIY  L +ID++L+S           +VD  +D  K+ SLRLHSERLAIA G+++L P
Sbjct: 507 TKQIYQQLKVIDDRLRS-----------IVDATNDSSKEYSLRLHSERLAIAFGLISLPP 555

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 556 QTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608


>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
          Length = 583

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/571 (65%), Positives = 433/571 (75%), Gaps = 27/571 (4%)

Query: 9   GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
            PP+   H+ S      N  S  +H  LL  L  C  MSQLKQ+HAQ +RT       T 
Sbjct: 8   APPSHLPHAIS------NSDSXTHHRRLLLFLNSCTCMSQLKQLHAQTIRTTSSHHPNTF 61

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
            +YSRI+HF+S  DL YAFRVF+QIENPNSF WN LIRACARS D K  AI L+ RM+EQ
Sbjct: 62  FLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQ 121

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G+V+ DKHTFPF LKACAYLFA S+G+Q HA I K G  SBVYINNSL+HFYA+C  LD 
Sbjct: 122 GSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDF 181

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248
           A  VFD M ERSLVSWNV+IDAFV+FGEFD+AL LF  MQ  FEPDGYT QSI +ACAG+
Sbjct: 182 AKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGM 241

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
            +LSLGMWAH ++L+  D   V DVL+N SL+DMYCKCGSL++A Q+F  MPKRD+TSWN
Sbjct: 242 GSLSLGMWAHVFLLKKXDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWN 301

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+ILGF+ HG   AAL+YF  +V  E   PN+ITFVGVLSACNH G+VSEGR YFDVM+ 
Sbjct: 302 SMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVT 361

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           EY I P LEHYGCLVDLLARAG IDEAL +VSNMPM+PD VIWRSLLDACCK++A V LS
Sbjct: 362 EYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELS 421

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           EE+A +V+E+EGG+CSGVYVLLSRVYASA RWNDVG+VRKLMTDKGV KEPGCSSIEI  
Sbjct: 422 EEMASRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIXA 481

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
                                LD+I+E+++  GY+PD SQA MVDE  DGKQ SLRLHSE
Sbjct: 482 ---------------------LDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSE 520

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
           RLAIA G+L  KPGMPIR+FKNLRVC +CH+
Sbjct: 521 RLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQ 551


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/578 (63%), Positives = 444/578 (76%), Gaps = 36/578 (6%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L +  S+S +KQIHAQ LRT                                 I  PNSF
Sbjct: 21  LNQSNSISHVKQIHAQILRT---------------------------------IHTPNSF 47

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMI-EQGNVL-PDKHTFPFALKACAYLFAFSQGKQA 157
           TWN LI++ ++S   K +AI+L++ +I EQ N L PDKHT+PF LKACAYLF+  +GKQ 
Sbjct: 48  TWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQV 107

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGE 216
           HAH+ K G   D YI NSLIHFYASCG+L+ A KVFD M E R++VSWNVMID++ + G+
Sbjct: 108 HAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGD 167

Query: 217 FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           +D  L +F  M  ++EPD YT QS+  AC GL +LSLGMW HA++L+ CD ++V DVLVN
Sbjct: 168 YDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVN 227

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
             L+DMYCKCGSL+IA+QVFE M  RD++SWNSIILGFA+HG+A+AAL YF R+V  E  
Sbjct: 228 TCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKI 287

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            PNSITFVGVLSACNH GMV EG  YF++M  EYN+ P L HYGCLVDL ARAG+I EAL
Sbjct: 288 VPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEAL 347

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
           ++VS MP+KPDAVIWRSLLDAC K+HASV LSEE+AKQ+ ES G +C G YVLLS+VYAS
Sbjct: 348 NVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYAS 407

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RWNDVGL+RKLM DKGV+K+PGCS IEI+G AHEFFAGDT+HPQ+K IY F++ I EK
Sbjct: 408 ASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEK 467

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           L+S GY PDYS A ++DE+++GKQ+++RLHSERLAIA G+LN KP MPIRVFKNLRVC D
Sbjct: 468 LESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCND 527

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH+VTKLISRI+NVEIIVRDR RFHHFKDGSCSCMDYW
Sbjct: 528 CHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565


>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
 gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
          Length = 550

 Score =  586 bits (1510), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 285/516 (55%), Positives = 368/516 (71%), Gaps = 8/516 (1%)

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           A +R  D   +A++LF+ +    +  P   + P  L A A+L A  +G+Q HA   K GL
Sbjct: 35  ARSRRADLAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGL 94

Query: 167 V-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
             S   + NSL+H Y+SCG    A  +F  + +RSLVSWN  +DA V  G+  +AL LFR
Sbjct: 95  APSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFR 154

Query: 226 RMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-----HSLVTDVLVNNS 278
            MQ   E  PD YT QS+  ACAG   LSLG++AHA +LR         ++  D+L+NNS
Sbjct: 155 EMQRDTELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNS 214

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+D+Y KCG+L++A+QVF+ MP RDL SWN +IL  A HGR   +++ FDR+   E  +P
Sbjct: 215 LVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAP 274

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N+ITFV VLSACNH G+V EGR YF +M+++Y I P +EHYGC+VDLLARAG I+EAL +
Sbjct: 275 NAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDI 334

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           V+ M  +PDA+IWRSLLDACCKK+A + L+E +AK  +E      SGVYVLLSRVYASA+
Sbjct: 335 VAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQ 394

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RWNDVG+VR+LM ++GV KEPG SSIE+DG+ H+F AGDTSHPQ++ IY  LD I  KL 
Sbjct: 395 RWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLT 454

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           S GY PD S+A +V  +D+ K ++LRLHSERLAI+ G+LN  PG PIR+ KNLRVCKDCH
Sbjct: 455 SAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCH 514

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            ++KLIS+++ VEIIVRDR RFHHFKDGSCSC DYW
Sbjct: 515 TISKLISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW 550


>gi|125599411|gb|EAZ38987.1| hypothetical protein OsJ_23405 [Oryza sativa Japonica Group]
          Length = 531

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/511 (53%), Positives = 355/511 (69%), Gaps = 17/511 (3%)

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           A +R  D   +A++LF+ +    +  P   + P  L A A+L A  +G+Q HA   K GL
Sbjct: 35  ARSRRADLAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGL 94

Query: 167 V-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
             S   + NSL+H Y+SCG    A  +F  + +RSLVSWN  +DA V  G+  +AL LFR
Sbjct: 95  APSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFR 154

Query: 226 RMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
            MQ   E  PD YT QS+  A        LG             ++  D+L+NNSL+D+Y
Sbjct: 155 EMQRDTELAPDAYTVQSVLGA-------ELGGDGDG-------EAVSRDMLINNSLVDLY 200

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG+L++A+QVF+ MP RDL SWN +IL  A HGR   +++ FDR+   E  +PN+ITF
Sbjct: 201 GKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITF 260

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           V VLSACNH G+V EGR YF +M+++Y I P +EHYGC+VDLLARAG I+EAL +V+ M 
Sbjct: 261 VAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDIVAGMN 320

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
            +PDA+IWRSLLDACCKK+A + L+E +AK  +E      SGVYVLLSRVYASA+RWNDV
Sbjct: 321 CRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQRWNDV 380

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
           G+VR+LM ++GV KEPG SSIE+DG+ H+F AGDTSHPQ++ IY  LD I  KL S GY 
Sbjct: 381 GMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLTSAGYK 440

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD S+A +V  +D+ K ++LRLHSERLAI+ G+LN  PG PIR+ KNLRVCKDCH ++KL
Sbjct: 441 PDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKL 500

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS+++ VEIIVRDR RFHHFKDGSCSC DYW
Sbjct: 501 ISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW 531


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/448 (58%), Positives = 334/448 (74%), Gaps = 5/448 (1%)

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--- 228
           + NSL+HFYASCG    A  VF  + +RSLVSWN  +DA    G+  +AL LFR MQ   
Sbjct: 101 VANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDR 160

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD--HSLVTDVLVNNSLIDMYCKC 286
               PD YT QS+  ACA    LSLG++AHA +LR      ++  DVL+NNSL+D+Y KC
Sbjct: 161 PDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKC 220

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G++++ARQVF+ M +RDL SWN+++L  A HGR + +L  FDR+   E   PN+ITFV V
Sbjct: 221 GAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAV 280

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSACNH G+V EGR YF  M++E+ I P +EHYGC+VD+LARAG I+EAL +V+ M  +P
Sbjct: 281 LSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRP 340

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           D++IWRSLLDACCK++A + LSE +AK  ++      SGVYVLLSRVYASA+RWNDVG++
Sbjct: 341 DSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGMI 400

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R+LM+ +G  KEPG SSIE+DG  H+F AGDTSHPQ+++IY  LD I ++L S GY PD 
Sbjct: 401 RQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPDL 460

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           S+A MV ++D  K ++LRLHSERLAI+ G+LN  PG PIR+ KNLRVCKDCH ++KLIS+
Sbjct: 461 SEAPMVADIDRTKGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISK 520

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++NVEIIVRDR RFHHFKDGSCSC DYW
Sbjct: 521 LYNVEIIVRDRIRFHHFKDGSCSCKDYW 548



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 124/253 (49%), Gaps = 13/253 (5%)

Query: 69  LIYSRIIHF-ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI- 126
           ++ + ++HF AS      A  VF ++ + +  +WNT + A A + D    A+ LF+ M  
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGD-HLAALDLFREMQR 158

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-----GLVSDVYINNSLIHFYA 181
           ++ ++ PD +T    L ACA   A S G  AHA + +       +  DV INNSL+  Y 
Sbjct: 159 DRPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYG 218

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQ 239
            CG ++LA +VFD M ER L SWN M+ A    G    +L LF RM  +    P+  TF 
Sbjct: 219 KCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFV 278

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           ++ SAC     +  G    A ++   +H +   +     ++D+  + G ++ A  V   M
Sbjct: 279 AVLSACNHGGLVDEGRRYFAAMV--SEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGM 336

Query: 300 PKR-DLTSWNSII 311
             R D   W S++
Sbjct: 337 NCRPDSIIWRSLL 349


>gi|326502116|dbj|BAK06550.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 542

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/520 (54%), Positives = 367/520 (70%), Gaps = 11/520 (2%)

Query: 104 LIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           L+R+ ARS   D   +A++LF+ +    +  P   + P AL A ++L A  +G+Q HA  
Sbjct: 25  LLRSLARSRRADLAHRALLLFRSLHASPSPPPPHFSLPAALSAASFLSALPEGRQLHALA 84

Query: 162 FKRGLVSD-VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
            K  L      + NSL+H YASCG  D A  +F  +  +SLVSWN  +DA     +   A
Sbjct: 85  AKLALAPAHTVVANSLLHLYASCGLPDAALALFRCIPAKSLVSWNTAVDALASNADHLGA 144

Query: 221 LKLFRRMQ--ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR----HCDHSLVTDVL 274
           L LFR MQ      PD YT QS+  ACAG   LSLG++AHA +LR    H D S   DVL
Sbjct: 145 LDLFREMQRDTGLAPDAYTLQSVLGACAGAGALSLGVYAHALLLRELGGHGDVS--RDVL 202

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +NNSL+D+Y KCG++++ARQVF+ MP+RD+TSWN  IL  A HG    +++ FDR+   E
Sbjct: 203 INNSLVDLYGKCGAVELARQVFDRMPERDVTSWNVAILTLANHGCVRESVELFDRMTRVE 262

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           +  PN+ITFV VLSACNH GMV EGR YFD+M+ EY I P +EHYGC+VD+LARAG I+E
Sbjct: 263 NVVPNAITFVAVLSACNHGGMVEEGRRYFDMMVGEYRIRPRIEHYGCMVDILARAGFIEE 322

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           AL +VS M  +PDA+IWRSLLDACC+++A + LSE +AK  ++      SGVYVLLSRVY
Sbjct: 323 ALDVVSGMNCRPDAIIWRSLLDACCRQNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVY 382

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A A++WNDVG+VR+LM+D+G+ KEPG SSIE+DG+ H+F AGDTSHPQ+++IY  LD I+
Sbjct: 383 AFAQKWNDVGMVRRLMSDEGLKKEPGFSSIEMDGLVHQFVAGDTSHPQSEEIYAKLDEIE 442

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           ++L S GY PD S+A MV  +D  K ++LRLHSERLAI+ G+L    G PIR+ KNLRVC
Sbjct: 443 QRLASSGYKPDLSEARMVAGMDHTKGAALRLHSERLAISFGLLKGTAGAPIRILKNLRVC 502

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KDCH ++KLI+ ++ VEIIVRDR RFHHFKDG+CSC DYW
Sbjct: 503 KDCHTISKLITGLYGVEIIVRDRIRFHHFKDGACSCKDYW 542



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 121/258 (46%), Gaps = 24/258 (9%)

Query: 69  LIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
           ++ + ++H +AS    D A  +F  I   +  +WNT + A A + D    A+ LF+ M  
Sbjct: 95  VVANSLLHLYASCGLPDAALALFRCIPAKSLVSWNTAVDALASNAD-HLGALDLFREMQR 153

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR----GLVS-DVYINNSLIHFYAS 182
              + PD +T    L ACA   A S G  AHA + +     G VS DV INNSL+  Y  
Sbjct: 154 DTGLAPDAYTLQSVLGACAGAGALSLGVYAHALLLRELGGHGDVSRDVLINNSLVDLYGK 213

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQS 240
           CG ++LA +VFD M ER + SWNV I      G    +++LF RM  +    P+  TF +
Sbjct: 214 CGAVELARQVFDRMPERDVTSWNVAILTLANHGCVRESVELFDRMTRVENVVPNAITFVA 273

Query: 241 ITSACAGLATLSLG-----MWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
           + SAC     +  G     M    Y +R   +H           ++D+  + G ++ A  
Sbjct: 274 VLSACNHGGMVEEGRRYFDMMVGEYRIRPRIEH--------YGCMVDILARAGFIEEALD 325

Query: 295 VFESMPKR-DLTSWNSII 311
           V   M  R D   W S++
Sbjct: 326 VVSGMNCRPDAIIWRSLL 343


>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 551

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/451 (57%), Positives = 334/451 (74%), Gaps = 8/451 (1%)

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--- 228
           + NSL+HFYASCG    A  VF  + +RSLVSWN  +DA    G+  +AL LFR MQ   
Sbjct: 101 VANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDR 160

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS-----LVTDVLVNNSLIDMY 283
               PD YT QS+  ACA    LSLG++AHA +LR    +     +  DVL+NNSL+D+Y
Sbjct: 161 PDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDLY 220

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG++++ARQVF+ M +RDL SWN+++L  A HGR + +L  FDR+   E   PN+ITF
Sbjct: 221 GKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITF 280

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           V VLSACNH G+V EGR YF  M++++ I P +EHYGC+VD+LARAG I+EAL +V+ M 
Sbjct: 281 VAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMN 340

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
            +PD++IWRSLLDACCK++A + LSE +AK  ++      SGVYVLLSRVYASA+RWNDV
Sbjct: 341 CRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDV 400

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
           G++R+LM+ +G  KEPG SSIE+DG  H+F AGDTSHPQ+++IY  LD I ++L S GY 
Sbjct: 401 GMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYK 460

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD S+A MV ++D  K ++LRLHSERLAI+ G+LN  PG PIR+ KNLRVCKDCH ++KL
Sbjct: 461 PDLSEAPMVADIDRTKGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKL 520

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS+++NVEIIVRDR RFHHFKDGSCSC DYW
Sbjct: 521 ISKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 551



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 124/256 (48%), Gaps = 16/256 (6%)

Query: 69  LIYSRIIHF-ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI- 126
           ++ + ++HF AS      A  VF ++ + +  +WNT + A A + D    A+ LF+ M  
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGD-HLAALDLFREMQR 158

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR--------GLVSDVYINNSLIH 178
           ++ ++ PD +T    L ACA   A S G  AHA + +          +  DV INNSL+ 
Sbjct: 159 DRPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVD 218

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGY 236
            Y  CG ++LA +VFD M ER L SWN M+ A    G    +L LF RM  +    P+  
Sbjct: 219 LYGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAI 278

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           TF ++ SAC     +  G    A ++   DH +   +     ++D+  + G ++ A  V 
Sbjct: 279 TFVAVLSACNHGGLVDEGRRYFAAMV--SDHGIRPRIEHYGCMVDILARAGFIEEALDVV 336

Query: 297 ESMPKR-DLTSWNSII 311
             M  R D   W S++
Sbjct: 337 AGMNCRPDSIIWRSLL 352


>gi|357111278|ref|XP_003557441.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Brachypodium distachyon]
          Length = 551

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/526 (53%), Positives = 369/526 (70%), Gaps = 15/526 (2%)

Query: 104 LIRACARSVDA--KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           L+R+ ARS  A    +A++LF+ +    +  P   + P AL A ++L A  +G+Q HA  
Sbjct: 26  LLRSLARSRRAHLAHRALLLFRSLHASPSPPPLHFSLPPALSAASFLAALPEGRQLHALA 85

Query: 162 FKRGLVSDVY--INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            K  L    +  + NSL+H YASCG    A  +F  +  +SLVSWN  +DA    G+  +
Sbjct: 86  AKLALPERAHTVVANSLLHLYASCGLPAAALALFRRIPAKSLVSWNTAVDALAGNGDHIA 145

Query: 220 ALKLFRRMQIL------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-----HS 268
           AL LFR +Q+         PD YT QS+  ACAG   LSLG++AHA +LR         +
Sbjct: 146 ALDLFRELQLEGAATAGLAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGQA 205

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           +  DVL+NNSL+D+Y KCG++++ARQVF+ MP+RD+TSWN +IL  A HGR   +++ FD
Sbjct: 206 VSRDVLINNSLVDLYGKCGAVELARQVFDRMPERDITSWNVMILTLANHGRVRESVELFD 265

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R+   E F PN+ITFV VLSACNH GMV EGR YF +M++EY I P +EHYGC+VD+LAR
Sbjct: 266 RMARAEKFVPNAITFVAVLSACNHGGMVEEGRRYFQMMVSEYGIRPRIEHYGCMVDILAR 325

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG I+EAL +VS M  +PDA+IWRSLLDACCK++A + LSE +AK  ++      SGVYV
Sbjct: 326 AGFIEEALDVVSGMNCRPDAIIWRSLLDACCKQNAGLELSEAMAKLALDVPDDAVSGVYV 385

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS+VYASA+RWNDVG+VR+LM ++G+ KEPG SSIE+DG+ H+F AGDTSHP T++IY 
Sbjct: 386 LLSQVYASAQRWNDVGMVRRLMREEGLKKEPGFSSIEMDGLVHQFVAGDTSHPLTEEIYK 445

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD I+++L S GY P+ S A MV  +D  K ++LRLHSERLAI+ G+L    G PIR+ 
Sbjct: 446 KLDEIEQRLTSSGYKPNLSAAPMVAGIDHAKGAALRLHSERLAISFGLLKATDGAPIRIL 505

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVCKDCH ++K+IS ++ VEIIVRDR RFHHFKDG+CSC DYW
Sbjct: 506 KNLRVCKDCHTISKIISELYGVEIIVRDRIRFHHFKDGACSCKDYW 551



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 124/271 (45%), Gaps = 30/271 (11%)

Query: 62  PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVL 121
           P++  T++  S +  +AS      A  +F +I   +  +WNT + A A + D    A+ L
Sbjct: 91  PERAHTVVANSLLHLYASCGLPAAALALFRRIPAKSLVSWNTAVDALAGNGD-HIAALDL 149

Query: 122 FQRMIEQG----NVLPDKHTFPFALK------ACAYLFAFSQGKQAHAHIFK-------- 163
           F+ +  +G     + PD +T            ACA   A S G  AHA + +        
Sbjct: 150 FRELQLEGAATAGLAPDAYT------VQSVLGACAGAGALSLGVYAHALLLRELGGDGDG 203

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
           + +  DV INNSL+  Y  CG ++LA +VFD M ER + SWNVMI      G    +++L
Sbjct: 204 QAVSRDVLINNSLVDLYGKCGAVELARQVFDRMPERDITSWNVMILTLANHGRVRESVEL 263

Query: 224 FRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           F RM     F P+  TF ++ SAC     +  G     + +   ++ +   +     ++D
Sbjct: 264 FDRMARAEKFVPNAITFVAVLSACNHGGMVEEGR--RYFQMMVSEYGIRPRIEHYGCMVD 321

Query: 282 MYCKCGSLDIARQVFESMPKR-DLTSWNSII 311
           +  + G ++ A  V   M  R D   W S++
Sbjct: 322 ILARAGFIEEALDVVSGMNCRPDAIIWRSLL 352


>gi|218199241|gb|EEC81668.1| hypothetical protein OsI_25221 [Oryza sativa Indica Group]
          Length = 931

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/495 (53%), Positives = 349/495 (70%), Gaps = 8/495 (1%)

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           A +R  D   +A++LF+ +    +  P   + P  L A A+L A  +G+Q HA   K GL
Sbjct: 35  ARSRRADLAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGL 94

Query: 167 V-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
             S   + NSL+H Y+SCG    A  +F  + +RSLVSWN  +DA V  G+  +AL LFR
Sbjct: 95  APSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFR 154

Query: 226 RMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-----HSLVTDVLVNNS 278
            MQ   E  PD YT QS+  ACAG   LSLG++AHA +LR         ++  D+L+NNS
Sbjct: 155 EMQRDTELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNS 214

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+D+Y KCG+L++A+QVF+ MP RDL SWN +IL  A HGR   +++ FDR+   E  +P
Sbjct: 215 LVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAP 274

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N+ITFV VLSACNH G+V EGR YF +M+++Y I P +EHYGC+VDLLARAG I+EAL +
Sbjct: 275 NAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDI 334

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           V+ M  +PDA+IWRSLLDACCKK+A + L+E +AK  +E      SGVYVLLSRVYASA+
Sbjct: 335 VAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQ 394

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RWNDVG+VR+LM ++GV KEPG SSIE+DG+ H+F AGDTSHPQ++ IY  LD I  KL 
Sbjct: 395 RWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLT 454

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           S GY PD S+A +V  +D+ K ++LRLHSERLAI+ G+LN  PG PIR+ KNLRVCKDCH
Sbjct: 455 SAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCH 514

Query: 579 EVTKLISRIFNVEII 593
            ++KLIS+++ VEII
Sbjct: 515 TISKLISKLYGVEII 529


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/603 (44%), Positives = 382/603 (63%), Gaps = 31/603 (5%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKT 67
           PTP  +S ++ NN+R    F NH +L S + +C    QLKQIHAQ LRT L   P     
Sbjct: 18  PTPNPNSITL-NNDR---YFANHPTL-SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASR 72

Query: 68  LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
           L+  + +   + F  LDYA +VF QI +PN +TWNTLIRA A S +   Q++++F RM+ 
Sbjct: 73  LITAAAL---SPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH-QSLLIFLRMLH 128

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           Q    PDK TFPF +KA + L     GK  H  + K  L SDV+I NSLIHFYA CG L 
Sbjct: 129 QSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELG 188

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
           L  +VF N   R +VSWN MI AFVQ G  + AL+LF+ M+    +P+G T   + SACA
Sbjct: 189 LGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACA 248

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
             +    G W H+YI R+    +   + ++N+++DMY KCGS++ A+++F+ MP++D+ S
Sbjct: 249 KKSDFEFGRWVHSYIERN---RIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVS 305

Query: 307 WNSIILGFA------------LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           W ++++G+A            +HG  + A+  F ++  E+   PN++TF  +L AC+H G
Sbjct: 306 WTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQ-EDKVKPNAVTFTNILCACSHVG 364

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V EGR +F+ M   Y + P ++HY C+VD+L RAG ++EA+ L+  MPM P A +W +L
Sbjct: 365 LVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGAL 424

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L AC   H +VVL+E+   Q+IE E G   G YVLLS +YA A +W+ V  +RKLM D G
Sbjct: 425 LGACTI-HENVVLAEQACSQLIELEPG-NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVG 482

Query: 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
           + KEPGCSSIE+DGI HEF  GD SHP  K+IY  LD I  +L++ GY P+ S    + E
Sbjct: 483 LKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVE 542

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
            +D K+ +L LHSE+LAIA G+++     PIR+ KNLRVC DCH V KL+S++++ EI++
Sbjct: 543 EEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILL 602

Query: 595 RDR 597
           RDR
Sbjct: 603 RDR 605


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/580 (45%), Positives = 371/580 (63%), Gaps = 11/580 (1%)

Query: 37  LSSLTECKSMS-QLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           ++ L  C S   + +QIHA ++R  +P  +  +  Y      +  + + YA ++F QI+N
Sbjct: 43  IALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQN 102

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN FTWNT+IR  A S +  P A+ L+++M     + PD HT+PF LKA A L    +G+
Sbjct: 103 PNIFTWNTMIRGYAESENPMP-ALELYRQM-HVSCIEPDTHTYPFLLKAIAKLMDVREGE 160

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           + H+   + G  S V++ N+L+H YA+CGH + A+K+F+ M ER+LV+WN +I+ +   G
Sbjct: 161 KVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 220

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + AL LFR M +   EPDG+T  S+ SACA L  L+LG  AH Y+++     L  ++ 
Sbjct: 221 RPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV---GLDGNLH 277

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             N+L+D+Y KCGS+  A +VF+ M ++ + SW S+I+G A++G  + AL+ F  L   +
Sbjct: 278 AGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELE-RK 336

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+ ITFVGVL AC+H GMV EG DYF  M  EY I P +EHYGC+VDLL RAG + +
Sbjct: 337 GLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQ 396

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   + NMPM+P+AV+WR+LL AC   H  + L E    Q+++ E    SG YVLLS +Y
Sbjct: 397 AHEFIQNMPMQPNAVVWRTLLGAC-TIHGHLALGEVARAQLLQLEPK-HSGDYVLLSNLY 454

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           AS +RW+DV  VR+ M  +GV K PG S +E+    HEF  GD SHPQT++IY  L  I 
Sbjct: 455 ASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEIT 514

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           + LK  GY P  S   + D  ++ K+++L  HSE++AIA  ++N   G+PIRV KNLRVC
Sbjct: 515 KLLKLEGYVPHISNV-LADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVC 573

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH   KLIS++F+ EI+VRDR+RFHHFKDG CSC DYW
Sbjct: 574 ADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/628 (42%), Positives = 373/628 (59%), Gaps = 58/628 (9%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRV 89
           H+  LS    C +  +++Q+HA +L+TA+        + SR++   S     DL YA  +
Sbjct: 16  HNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHP---FVSSRLLALYSDPKINDLGYARSI 72

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F +I+  +   WNT+I+ C          IVLF  ++ +   LPD  T P  +K CA L 
Sbjct: 73  FDRIQRRSLIHWNTIIK-CYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLG 129

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER---------- 199
              +GKQ H    K G  SDV++  SL++ Y+ CG +D A KVFD M+++          
Sbjct: 130 VVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLID 189

Query: 200 -SLVSWNVMIDAFVQFGEFDSALKLFRRMQI------------------------LF--- 231
            +LVSWN MI+ +++ G+FDSAL+LF +M I                        +F   
Sbjct: 190 GNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMM 249

Query: 232 -----EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                 P   T  S+ SA +GLA L  G W H+Y+ ++       D ++  SLI+MY KC
Sbjct: 250 LKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKN---GFELDGILGTSLIEMYAKC 306

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G ++ A  VF ++ K+ +  W +II+G  +HG A  AL  F  +  +    PN+I F+GV
Sbjct: 307 GCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMC-KTGLKPNAIIFIGV 365

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           L+ACNH G+V +GR YFD+M+NEY I P LEHYGCLVD+L RAG+++EA + + NMP+ P
Sbjct: 366 LNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISP 425

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           + VIW SLL    + H  + + E  A++VIE       G Y+LLS +YA++  W  V  V
Sbjct: 426 NKVIWMSLLGGS-RNHGKIDIGEYAAQRVIEVAPETI-GCYILLSNMYAASGMWEKVSHV 483

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R++M  +G  K+PGCSS+E  G  HEF  GD SHPQTK+IY  +  + EKLK  G+ PD 
Sbjct: 484 REMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDT 543

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           +Q  +  E +  K++ L  HSERLAIA G++N+KPG+PIR+ KNLRVC DCH VTKL+S+
Sbjct: 544 TQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSK 603

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I++ EIIVRD  RFHHFK+GSCSCMDYW
Sbjct: 604 IYSREIIVRDNCRFHHFKNGSCSCMDYW 631


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/573 (43%), Positives = 370/573 (64%), Gaps = 13/573 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNSFTWN 102
           M  L+QIHA+ L  A+P    +  +  +II F +   + D+DYA ++F QI+ PN F+WN
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGL-CKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWN 59

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           ++IR C++S     + ++LF++M+ +G   P+  T  F LKAC+ + A  +G+Q HA++ 
Sbjct: 60  SMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVL 119

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G  S  ++  +L++FYA C  + LA+KVFD + +R+LV+W+ MI  + + G  + AL 
Sbjct: 120 KSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 179

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           LFR MQ     PD  T  S+ SACA    L  G W HAYI +     + TD+ ++ +L++
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL---IETDLELSTALVN 236

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG ++ A++VF++MP +D  +W+S+I+G A++G AE AL+ F R+  E    PN +
Sbjct: 237 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRM-EEAKVKPNHV 295

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TF+GVLSAC H G+VSEGR Y+  M+ E+ I P +E YGC+VDLL RA  +++A  LV  
Sbjct: 296 TFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVET 354

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MP+ P+ VIWR+LL   CKK  ++  SE VA++++E E       Y+LLS +YAS  +W 
Sbjct: 355 MPISPNPVIWRTLLVG-CKKSKNLDKSEVVAQRLLELEPHNAEN-YILLSNLYASMSQWE 412

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
            +  VRK M   G+   PGCSSIE+DG+ HEF  GD SHP+  ++   L  I +++ + G
Sbjct: 413 KMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVG 472

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           + P  S   + + +D+ K+++L  HSERLAIA G+L  K  M IR+ KNLRVC DCHEVT
Sbjct: 473 HQPGISD-VLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVT 531

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+IS  +  EIIVRDR RFH F +GSCSC D+W
Sbjct: 532 KIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/574 (43%), Positives = 371/574 (64%), Gaps = 13/574 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENP 96
           + +C+SM  L+QIHA+ L  A+P    +  +  +II F +   + D+DYA ++F QI+ P
Sbjct: 64  IRKCRSMRVLRQIHARLLTHAMPISSISFGL-CKIIGFCALSPYGDIDYARKLFSQIQRP 122

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           N F+WN++IR C++S     + ++LF++M+ +G   P+  T  F LKAC+ + A  +G+Q
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HA++ K G  S  ++  +L++FYA C  + LA+KVFD + +R+LV+W+ MI  + + G 
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            + AL LFR MQ     PD  T  S+ SACA    L  G W HAYI +     + TD+ +
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL---IETDLEL 299

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           + +L++MY KCG ++ A++VF++MP +D  +W+S+I+G A++G AE AL+ F R+  E  
Sbjct: 300 STALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRM-EEAK 358

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PN +TF+GVLSAC H G+VSEGR Y+  M+ E+ I P +E YGC+VDLL RA  +++A
Sbjct: 359 VKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDA 417

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             LV  MP+ P+ VIWR+LL   CKK  ++  SE VA++++E E       Y+LLS +YA
Sbjct: 418 CTLVETMPISPNPVIWRTLLVG-CKKSKNLDKSEVVAQRLLELEPHNAEN-YILLSNLYA 475

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           S  +W  +  VRK M   G+   PGCSSIE+DG+ HEF  GD SHP+  ++   L  I +
Sbjct: 476 SMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISK 535

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           ++ + G+ P  S   + + +D+ K+++L  HSERLAIA G+L  K  M IR+ KNLRVC 
Sbjct: 536 RVHAVGHQPGISD-VLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCG 594

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           DCHEVTK+IS  +  EIIVRDR RFH F +GSCS
Sbjct: 595 DCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628


>gi|242043238|ref|XP_002459490.1| hypothetical protein SORBIDRAFT_02g005450 [Sorghum bicolor]
 gi|241922867|gb|EER96011.1| hypothetical protein SORBIDRAFT_02g005450 [Sorghum bicolor]
          Length = 395

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/386 (59%), Positives = 299/386 (77%), Gaps = 4/386 (1%)

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRH----CDHSLVTDVLVNNSLIDMYCKCGS 288
           PD YT QS+  ACA    LSLG++AHA +LR        ++  DVL+NNSL+D+Y KCG+
Sbjct: 10  PDAYTLQSVLGACAAAGALSLGLYAHALLLRELGADASAAVSRDVLINNSLVDLYGKCGA 69

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +++ARQVF+ MP+RDL SWN+++L  A HGR   +L  FDR+   E+  PN+ITFV VLS
Sbjct: 70  VELARQVFDRMPERDLASWNAMVLALANHGRVRDSLDLFDRMTRVENVRPNAITFVAVLS 129

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           ACN+ G+V EGR YF  M++EY I P +EHYGCLVD+LARAG I+EAL +V+ M  +PD+
Sbjct: 130 ACNYGGLVEEGRRYFAAMVSEYGIRPRIEHYGCLVDILARAGFIEEALDVVAGMNCRPDS 189

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
           +IWRSLLDACCK++A + LSE +AK  ++      SGVYVLLSRVYASA+RWNDVG++R+
Sbjct: 190 IIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGMIRR 249

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           LM+++G  KEPG SSIE+DG  H+F AGDTSHPQ+++IY  LD I ++L S GY PD S+
Sbjct: 250 LMSEEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYEKLDEIQQRLTSAGYKPDLSE 309

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
           A MV ++D  K ++LRLHSERLAI+ G+LN+ PG PIR+ KNLRVCKDCH ++KLIS+++
Sbjct: 310 APMVADIDRTKGATLRLHSERLAISFGLLNVTPGAPIRILKNLRVCKDCHTISKLISKLY 369

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
           +VEIIVRDR RFHHFK GSCSC DYW
Sbjct: 370 DVEIIVRDRIRFHHFKGGSCSCKDYW 395



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 12/195 (6%)

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-------GLVSDVYINNSLIHF 179
           ++ ++ PD +T    L ACA   A S G  AHA + +         +  DV INNSL+  
Sbjct: 4   DRPDLAPDAYTLQSVLGACAAAGALSLGLYAHALLLRELGADASAAVSRDVLINNSLVDL 63

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYT 237
           Y  CG ++LA +VFD M ER L SWN M+ A    G    +L LF RM  +    P+  T
Sbjct: 64  YGKCGAVELARQVFDRMPERDLASWNAMVLALANHGRVRDSLDLFDRMTRVENVRPNAIT 123

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
           F ++ SAC     +  G    A ++   ++ +   +     L+D+  + G ++ A  V  
Sbjct: 124 FVAVLSACNYGGLVEEGRRYFAAMV--SEYGIRPRIEHYGCLVDILARAGFIEEALDVVA 181

Query: 298 SMPKR-DLTSWNSII 311
            M  R D   W S++
Sbjct: 182 GMNCRPDSIIWRSLL 196



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A +VF ++   +  +WN ++ A A     +  ++ LF RM    NV P+  TF   L
Sbjct: 70  VELARQVFDRMPERDLASWNAMVLALANHGRVR-DSLDLFDRMTRVENVRPNAITFVAVL 128

Query: 143 KACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-S 200
            AC Y     +G++  A +    G+   +     L+   A  G ++ A  V   M  R  
Sbjct: 129 SACNYGGLVEEGRRYFAAMVSEYGIRPRIEHYGCLVDILARAGFIEEALDVVAGMNCRPD 188

Query: 201 LVSWNVMIDA 210
            + W  ++DA
Sbjct: 189 SIIWRSLLDA 198


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/609 (44%), Positives = 364/609 (59%), Gaps = 38/609 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTL--------------LIYSR----- 73
           LL S  +  +  + KQIH   L+  L   P  H +L              L++S+     
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 74  -------IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
                  I  +     LD A R+F +I   ++ +WN +I   A+S   + +A+  FQ M 
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE-EALAFFQEM- 255

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           ++ NV P++ T    L ACA   +   G    + I   GL S++ + N+LI  Y+ CG L
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
           D A  +F+ + E+ ++SWNVMI  +     +  AL LFR+MQ    EP+  TF SI  AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  L LG W HAYI +      +T+  +  SLIDMY KCG+++ A+QVF  M  + L 
Sbjct: 376 AYLGALDLGKWIHAYIDK--KFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLG 433

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN++I G A+HG A  AL+ F R + +E F P+ ITFVGVLSAC+H G+V  GR  F  
Sbjct: 434 SWNAMISGLAMHGHANMALELF-RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSS 492

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M+ +Y+I+P L+HYGC++DLL RAG  DEA  L+ NM MKPD  IW SLL AC + H +V
Sbjct: 493 MVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGAC-RVHGNV 551

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L E  AK + E E     G YVLLS +YA+A RW+DV  +R  + DKG+ K PGCSSIE
Sbjct: 552 ELGEFAAKHLFELEPE-NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIE 610

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           +D + HEF  GD  H Q++ IY  LD ID+ L+  G+ PD S+  + D  ++ K+ SL  
Sbjct: 611 VDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEV-LYDMDEEWKEGSLSH 669

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G+++ KP   IR+ KNLRVC +CH   KLIS+IFN EII RDR RFHHFKD
Sbjct: 670 HSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKD 729

Query: 606 GSCSCMDYW 614
           GSCSCMDYW
Sbjct: 730 GSCSCMDYW 738



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 229/436 (52%), Gaps = 51/436 (11%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF---ASFADLDYA 86
             NH SL + L+ CKS   LKQIH+Q ++T L   H T    S++I F   + F +L YA
Sbjct: 30  LQNHPSL-TLLSTCKSFQNLKQIHSQIIKTGL---HNTQFALSKLIEFCAISPFGNLSYA 85

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
             +F  IE PN F WNT+IR    S+ + P  AI  + RM+  G V P+ +TFPF LK+C
Sbjct: 86  LLLFESIEQPNQFIWNTMIRG--NSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSC 142

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH-------------------- 185
           A + A  +GKQ H H+ K GL SD +++ SLI+ YA  G                     
Sbjct: 143 AKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFT 202

Query: 186 -----------LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEP 233
                      LD A ++F+ +  R  VSWN MI  + Q G F+ AL  F+ M+     P
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAP 262

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  T  ++ SACA   +L LG W  ++I    DH L +++ + N+LIDMY KCG LD AR
Sbjct: 263 NESTMVTVLSACAQSGSLELGNWVRSWIE---DHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            +FE + ++D+ SWN +I G++     + AL  F R + + +  PN +TFV +L AC + 
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALF-RKMQQSNVEPNDVTFVSILPACAYL 378

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWR 412
           G +  G+     +  ++        +  L+D+ A+ GNI+ A  + +   MKP ++  W 
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLGSWN 436

Query: 413 SLLDACC-KKHASVVL 427
           +++       HA++ L
Sbjct: 437 AMISGLAMHGHANMAL 452



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 147/334 (44%), Gaps = 43/334 (12%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P   + FQ   +    L   H     L  C    +F   KQ H+ I K GL +  +  + 
Sbjct: 13  PPPTLHFQPTSDPPYKLLQNHPSLTLLSTCK---SFQNLKQIHSQIIKTGLHNTQFALSK 69

Query: 176 LIHFYA--SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
           LI F A    G+L  A  +F+++ + +   WN MI           A+  + RM +   E
Sbjct: 70  LIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVE 129

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS---- 288
           P+ YTF  +  +CA +     G   H ++L+     L +D  V+ SLI+MY + G     
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLK---LGLESDPFVHTSLINMYAQNGELGYA 186

Query: 289 ---------------------------LDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
                                      LD AR++FE +P RD  SWN++I G+A  GR E
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL +F  +    + +PN  T V VLSAC   G +  G ++    I ++ +   L     
Sbjct: 247 EALAFFQEM-KRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNA 304

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L+D+ ++ G++D+A  L   +  K D + W  ++
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEK-DIISWNVMI 337


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/579 (44%), Positives = 354/579 (61%), Gaps = 48/579 (8%)

Query: 72  SRIIHFASFAD---LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           S+I+ F +  D   L YA  VF QI NP +FT N++IR      +   QAI+ +Q M+ Q
Sbjct: 14  SKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNK-NLPRQAILFYQLMMLQ 72

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G + PD+ TFP   K+C  L    +GKQ H H  K G  SD YI N+L++ Y++CG L  
Sbjct: 73  G-LDPDRFTFPSLFKSCGVL---CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS 128

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI------------------- 229
           A KVFD M+ +S+VSW  MI A+ Q+     A+KLFRRM+I                   
Sbjct: 129 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188

Query: 230 ------LF--------EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
                 LF        + D  T  S+  AC  L  L LG W H YI +     +  DV +
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE---KIEVDVAL 245

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             +L+DMY KCGS++ A +VF+ MP++D+ +W ++I+G A+ G+   AL+ F  + + E 
Sbjct: 246 GTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSE- 304

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P++ITFVGVL+AC+H G+V+EG  YF+ M N+Y I P +EHYGC+VD+L RAG I EA
Sbjct: 305 VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEA 364

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             L+ NMPM PD  +   LL AC + H ++V++E  A+Q+IE +     G YVLLS +Y+
Sbjct: 365 EDLIQNMPMAPDYFVLVGLLSAC-RIHGNLVVAERAAQQLIELDPK-NGGTYVLLSNIYS 422

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           S + W     +R+LM ++ + K PGCS+IE+ G+ HEF  GD SHPQ+ +IY  LD +  
Sbjct: 423 SMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMR 482

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           +LKS GY PD S+  + D  +  K++ L LHSE+LAIA G+L+  PG PIRV KNLRVC 
Sbjct: 483 RLKSAGYVPDKSEV-LFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCS 541

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   K IS ++N EIIVRDR RFHHF  GSCSC D+W
Sbjct: 542 DCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/588 (44%), Positives = 360/588 (61%), Gaps = 26/588 (4%)

Query: 40  LTECKSMSQ--------LKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAF 87
           LT+C S+ Q        LKQIHA ++R  +    P   K L+    I+  +  A + YA+
Sbjct: 17  LTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIF--TIVSLS--APMSYAY 72

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I NPN FTWNT+IR  A S +  P    LF R +    V PD HT+PF LKA + 
Sbjct: 73  NVFTVIHNPNVFTWNTIIRGYAESDNPSPA--FLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                +G+  H+   + G  S V++ NSL+H YA+CG  + A KVF+ M ER LV+WN M
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I+ F   G  + AL LFR M +   EPDG+T  S+ SA A L  L LG   H Y+L+   
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV-- 248

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  +  V NSL+D+Y KCG++  A++VF  M +R+  SW S+I+G A++G  E AL+ 
Sbjct: 249 -GLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALEL 307

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +   +   P+ ITFVGVL AC+H GM+ EG +YF  M  E  I P +EHYGC+VDLL
Sbjct: 308 FKEME-GQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLL 366

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
           +RAG + +A   + NMP++P+AVIWR+LL AC   H  + L E     ++  E    SG 
Sbjct: 367 SRAGLVKQAYEYIQNMPVQPNAVIWRTLLGAC-TIHGHLGLGEIARSHLLNLEPK-HSGD 424

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +YAS RRW+DV ++R+ M   GV K PG S +E+    +EF  GD SHPQ++ +
Sbjct: 425 YVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDV 484

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L+ I E LK  GY P ++   + D  ++ K+ +L  HSE++AIA  +LN  PG PIR
Sbjct: 485 YALLEKITELLKLEGYVP-HTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIR 543

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCH   KLI++I++ EI++RDR+RFHHF+ GSCSC DYW
Sbjct: 544 VMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/610 (43%), Positives = 375/610 (61%), Gaps = 25/610 (4%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSM--------SQLKQIHAQALRTALPQQHKTL 68
           S +I +N+ ++   + H S +  L +C S+        S+LKQIHA ++R  +P Q+   
Sbjct: 13  SRTITSNSSSQNFLDCHLSFI--LRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDF 70

Query: 69  ---LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
              LI++ +   +  A + +A ++F QI+ PN FTWNT+IR  A S +  P A+ LF +M
Sbjct: 71  NKHLIFALV---SLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSP-AVELFSQM 126

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
               ++LPD HTFPF  KA A L   S G+  H+ + + G  S  ++ NSL+H Y+  G 
Sbjct: 127 HAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGS 186

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
           L  A +VF+ M  R  V+WN +I+ F   G  + AL L+R M     EPDG+T  S+ SA
Sbjct: 187 LXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSA 246

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  L  L+LG   H Y+++     LV +   +N+L+D+Y KCG+   A++VF+ M +R +
Sbjct: 247 CVELGALALGERVHMYMVKV---GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSV 303

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            SW S+I+G A++G    ALK F  L   +   P+ ITFVGVL AC+H GM+ EG +YF 
Sbjct: 304 VSWTSLIVGLAVNGLGNEALKLFGELE-RQGLKPSEITFVGVLYACSHCGMLDEGFNYFR 362

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M  EY I P +EH+GC+VDLL RAG + +A   + NMP+ P+AVIWR+LL AC   H  
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC-TIHGH 421

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           + L E VA+  I+      SG +VLLS +YAS RRW DV  VRK+M  KGV K PG S +
Sbjct: 422 LELGE-VARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLV 480

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           E+    +EF  GD SHPQ+++ Y  L  I + LK  GY P  +   + D  ++ K+++L 
Sbjct: 481 ELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPR-TVNVLADIEEEEKETALS 539

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            H+E++AIA  ++N  PG PIR+ KNLRVC DCH   KLIS++F  EIIVRDR+RFHHFK
Sbjct: 540 HHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFK 599

Query: 605 DGSCSCMDYW 614
           DGSCSC DYW
Sbjct: 600 DGSCSCKDYW 609


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/586 (44%), Positives = 364/586 (62%), Gaps = 16/586 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDYAFRV 89
           SSLLS L +C S+ +LKQI A +++T L      L I +++I+      + A +DYA ++
Sbjct: 27  SSLLSCLPKCTSLKELKQIQAFSIKTHL---QNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  I  P+   +N++ R  +RS +A  +AI LF + +   N+LPD +TFP  LKAC    
Sbjct: 84  FEAIPQPDIVLFNSMFRGYSRS-NAPLKAISLFIKALNY-NLLPDDYTFPSLLKACVVAK 141

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           AF QGKQ H    K GL  + Y+  +LI+ YA C  +D A +VFD +LE  +VS+N +I 
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + +    + AL LFR++Q    +P+  T  S+ S+CA L  L LG W H Y+ ++    
Sbjct: 202 GYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN---G 258

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L   V VN +LIDMY KCGSLD A  VFESM  RD  +W+++I+ +A+HG+ +  +  F+
Sbjct: 259 LDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFE 318

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +       P+ ITF+G+L AC+H G+V EG  YF  M   Y I P ++HYGC+VDLL R
Sbjct: 319 EMA-RAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGR 377

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG + EA   +  +P+KP  ++WR+LL +C   H ++ L+++V  Q++E +     G YV
Sbjct: 378 AGLLHEAYKFIDELPIKPTPILWRTLLSSC-SSHGNLELAKQVMNQILELDDSH-GGDYV 435

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           +LS + A A +W DV  +RKLM  KG  K PGCSSIE+D + HEFF+GD  H  +  ++ 
Sbjct: 436 ILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHR 495

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD + ++LKS GY PD S     D  D+ K+ +LR HSE+LAI+ G+LN  PG  IRV 
Sbjct: 496 ALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVV 555

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH   KLIS + + EII+RD  RFHHFKDG CSC DYW
Sbjct: 556 KNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/630 (39%), Positives = 376/630 (59%), Gaps = 64/630 (10%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFYQI 93
           LS    CKSM  LKQIH++ ++T +       +I ++I+ F     F D+ YA ++F  I
Sbjct: 18  LSLFETCKSMYHLKQIHSRTIKTGIICNP---IIQNKILSFCCSREFGDMCYARQLFDTI 74

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             P+ F+WN + +  +R +      + L+  M+E+ NV PD +T+PF  K      A   
Sbjct: 75  PEPSVFSWNIMFKGYSR-IACPKLGVSLYLEMLER-NVKPDCYTYPFLFKGFTRSVALQL 132

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD------------------- 194
           G++ H H+ K GL S+V+ +N+LI+ Y+ CG +D+A  +FD                   
Sbjct: 133 GRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNR 192

Query: 195 -----------------------------NMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
                                         M ER  VSW  MID +++   +  AL LFR
Sbjct: 193 IKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFR 252

Query: 226 RMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            MQ    +PD +T  S+ +ACA L  L LG W   YI ++    +  D  V N+LIDMY 
Sbjct: 253 EMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKN---KVKNDTFVGNALIDMYF 309

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG++++A  +F ++P+RD  +W ++++G A++G  E AL  F +++ + S +P+ +T+V
Sbjct: 310 KCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQML-KASVTPDEVTYV 368

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVLSAC H GMV EG+ +F  M   + I P + HYGC+VDLL +AG++ EA  ++ NMPM
Sbjct: 369 GVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPM 428

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           KP++++W +LL AC + H    ++E   +Q++E E      VYVL   +YA+  +W+ + 
Sbjct: 429 KPNSIVWGALLGAC-RIHKDAEMAERAIEQILELEPNN-GAVYVLQCNIYAACNKWDKLR 486

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            +R++M D+G+ K PGCS IE++GI HEF AGD SHPQTK+IYG L+ +   LK  GY+P
Sbjct: 487 ELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSP 546

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           + S+   +D  ++ K++++  HSE+LAIA G++N  PG+ IR+ KNLR+C DCH V KL+
Sbjct: 547 NTSEV-FLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLV 605

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S++++ E+IVRDR RFHHF+ GSCSC DYW
Sbjct: 606 SKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/620 (43%), Positives = 364/620 (58%), Gaps = 41/620 (6%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQ---HKTL---------LIYSR 73
           NE +F    S+  S T+ +   + KQ+HA  L+  L      H +L         L+ +R
Sbjct: 127 NEYTF---PSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNAR 183

Query: 74  IIH-----------------FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
           ++                  +AS   LD A  +F +I   +  +WN +I   A+S   + 
Sbjct: 184 LVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVE- 242

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ-GKQAHAHIFKRGLVSDVYINNS 175
           +A+  F+ M  +  V P+  T    L ACA   +  Q G    + I  RGL S++ + N 
Sbjct: 243 EAMAFFEEM-RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNG 301

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPD 234
           LI  Y  CG L+ A+ +F+ + ++++VSWNVMI  +     +  AL LFRRM Q   +P+
Sbjct: 302 LIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
             TF SI  ACA L  L LG W HAY+ ++   S+   V +  SLIDMY KCG L +A++
Sbjct: 362 DVTFLSILPACANLGALDLGKWVHAYVDKNMK-SMKNTVALWTSLIDMYAKCGDLAVAKR 420

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F+ M  + L +WN++I GFA+HG  + AL  F R+   E F P+ ITFVGVL+AC H G
Sbjct: 421 IFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMT-SEGFVPDDITFVGVLTACKHAG 479

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           ++S GR YF  MI +Y ++P L HYGC++DL  RAG  DEA  LV NM MKPD  IW SL
Sbjct: 480 LLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSL 539

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L AC + H  + L+E VAK + E E    S  YVLLS +YA A RW DV  +R  + D  
Sbjct: 540 LGAC-RIHRRIELAESVAKHLFELEPENPSA-YVLLSNIYAGAGRWEDVAKIRTRLNDNR 597

Query: 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
           + K PGCSSIE+D + HEF  GD  HPQ+ +IY  LD ID +L+  G+ PD S+  + D 
Sbjct: 598 MKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEV-LYDM 656

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
            ++ K+  L  HSE+LAIA G+++ KPG  IR+ KNLRVC +CH  TKLIS+IFN EII 
Sbjct: 657 DEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIA 716

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RDR RFHHFKDGSCSC DYW
Sbjct: 717 RDRNRFHHFKDGSCSCKDYW 736



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 210/420 (50%), Gaps = 51/420 (12%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQI 93
           L+ L+ CK++  LKQIH+Q ++T L   H T    S++I F + +   DL YA  +F  I
Sbjct: 32  LTLLSNCKTLQTLKQIHSQIIKTGL---HNTHFALSKLIEFCAVSPHGDLSYALSLFKTI 88

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            NPN   WN +IR  + S ++   A+  +  MI  G   P+++TFP   K+C  +    +
Sbjct: 89  RNPNHVIWNHMIRGLSSS-ESPFLALEYYVHMISSGTE-PNEYTFPSIFKSCTKIRGAHE 146

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHF-------------------------------YAS 182
           GKQ HAH+ K GL  + +++ SLI+                                YAS
Sbjct: 147 GKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYAS 206

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSI 241
            G LD A ++FD +  R +VSWN MI  + Q G  + A+  F  M +    P+  T  S+
Sbjct: 207 KGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSV 266

Query: 242 TSACA-GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
            SACA   ++L LG W  ++I    D  L +++ + N LIDMY KCG L+ A  +FE + 
Sbjct: 267 LSACAQSGSSLQLGNWVRSWIE---DRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ 323

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            +++ SWN +I G+      + AL  F R+ ++ +  PN +TF+ +L AC + G +  G+
Sbjct: 324 DKNVVSWNVMIGGYTHMSCYKEALGLFRRM-MQSNIDPNDVTFLSILPACANLGALDLGK 382

Query: 361 ---DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               Y D  +     T  L  +  L+D+ A+ G++  A  +   M  K  A  W +++  
Sbjct: 383 WVHAYVDKNMKSMKNTVAL--WTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-WNAMISG 439


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/573 (42%), Positives = 362/573 (63%), Gaps = 13/573 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNSFTWN 102
           M  L+Q+HA  L   LP       + S+I+ F +   F +++YA  VF QI +PN F+WN
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFAL-SKIVAFCALSPFGNINYARSVFAQIPHPNIFSWN 59

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           +LI+  ++      + I LF+++ E G  +P+  T  F LKACA + AF +G Q H+H+ 
Sbjct: 60  SLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVL 119

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G  S +++  SL++FY  C  +  A KVF+ M  R+LV+W  MI    + G  D A++
Sbjct: 120 KDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAME 179

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           LFR MQ    +PD  T  S+ SACA    L +G W HAYI +   + ++TD+ ++ +L+D
Sbjct: 180 LFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEK---YFVLTDLELSTALVD 236

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG ++ A+QVF  MP +D T+W+S+I+GFA HG A+ A+  F ++ +E   +P+ +
Sbjct: 237 MYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM-LETEVTPDHV 295

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TF+ VLSAC H G+VS GR ++ +M+ E+ I P +EHYGC VDLL R+G ++EA  + + 
Sbjct: 296 TFLAVLSACAHGGLVSRGRRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTT 354

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           M + P+A  WRSLL   CKK   + L E VA+ ++E E  + +  Y+++S +Y+S  +W 
Sbjct: 355 MKIPPNAATWRSLLMG-CKKKKLLNLGEIVARYLLELE-PLNAENYIMISNLYSSLSQWE 412

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
            +  +RK+M +K +   PGCSSIE+DG+ HEF  GD SHP+ K +  F++ +  +++  G
Sbjct: 413 KMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSG 472

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           Y P  S   +   +D+ K+ +L  HSER AIA G+L  +  + IRV KNLRVC DCHEV 
Sbjct: 473 YRPSISD-VLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVI 531

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+IS+++  EIIVRDR RFH F  G+CSC D+W
Sbjct: 532 KIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/610 (43%), Positives = 375/610 (61%), Gaps = 25/610 (4%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSM--------SQLKQIHAQALRTALPQQHKTL 68
           S +I +N+ ++   + H S +  L +C S+        S+LKQIHA ++R  +P Q+   
Sbjct: 13  SRTITSNSSSQNFLDCHLSFI--LRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDF 70

Query: 69  ---LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
              LI++ +   +  A + +A ++F QI+ PN FTWNT+IR  A S +  P A+ LF +M
Sbjct: 71  NKHLIFALV---SLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSP-AVELFSQM 126

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
               ++LPD HTFPF  KA A L   S G+  H+ + + G  S  ++ NSL+H Y+  G 
Sbjct: 127 HAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGF 186

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
            + A +VF+ M  R  V+WN +I+ F   G  + AL L+R M     EPDG+T  S+ SA
Sbjct: 187 AESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSA 246

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  L  L+LG   H Y+++     LV +   +N+L+D+Y KCG+   A++VF+ M +R +
Sbjct: 247 CVELGALALGERVHMYMVKV---GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSV 303

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            SW S+I+G A++G    ALK F  L   +   P+ ITFVGVL AC+H GM+ EG +YF 
Sbjct: 304 VSWTSLIVGLAVNGLGNEALKLFGELE-RQGLKPSEITFVGVLYACSHCGMLDEGFNYFR 362

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M  EY I P +EH+GC+VDLL RAG + +A   + NMP+ P+AVIWR+LL AC   H  
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC-TIHGH 421

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           + L E VA+  I+      SG +VLLS +YAS RRW DV  VRK+M  KGV K PG S +
Sbjct: 422 LELGE-VARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLV 480

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           E+    +EF  GD SHPQ+++ Y  L  I + LK  GY P  +   + D  ++ K+++L 
Sbjct: 481 ELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPR-TVNVLADIEEEEKETALS 539

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            H+E++AIA  ++N  PG PIR+ KNLRVC DCH   KLIS++F  EIIVRDR+RFHHFK
Sbjct: 540 HHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFK 599

Query: 605 DGSCSCMDYW 614
           DGSCSC DYW
Sbjct: 600 DGSCSCKDYW 609


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/621 (41%), Positives = 369/621 (59%), Gaps = 47/621 (7%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDY 85
           S   H   L  L  C +M++LKQ H+Q +R  L   +  +    R+I F + +   DL+Y
Sbjct: 16  SAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAM---GRVIKFCAISKSGDLNY 72

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF +I +P+++ +NT+ R   R   A+   I ++ RM+ + +V P+K T+P  ++AC
Sbjct: 73  ALEVFDKIPHPDAYIYNTIFRGYLRWQLAR-NCIFMYSRMLHK-SVSPNKFTYPPLIRAC 130

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-------- 197
              +A  +GKQ HAH+ K G  +D +  N+LIH Y +   L+ A +VFDNM         
Sbjct: 131 CIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWT 190

Query: 198 -----------------------ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEP 233
                                  ER+ VSWN MI A+VQ      A  LF RM++     
Sbjct: 191 SLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL 250

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D +   S+ SAC GL  L  G W H YI +     +  D  +  ++IDMYCKCG L+ A 
Sbjct: 251 DKFVAASMLSACTGLGALEQGKWIHGYIEKS---GIELDSKLATTVIDMYCKCGCLEKAS 307

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           +VF  +P++ ++SWN +I G A+HG+ EAA++ F  +   E  +P+ ITFV VLSAC H 
Sbjct: 308 EVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME-REMVAPDGITFVNVLSACAHS 366

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V EG+ YF  M     + P +EH+GC+VDLL RAG ++EA  L++ MP+ PDA +  +
Sbjct: 367 GLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGA 426

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           L+ AC + H +  L E++ K+VIE E    SG YVLL+ +YASA RW DV  VRKLM D+
Sbjct: 427 LVGAC-RIHGNTELGEQIGKKVIELEPH-NSGRYVLLANLYASAGRWEDVAKVRKLMNDR 484

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           GV K PG S IE +    EF AG  +HPQ K+IY  LD I E ++S GY PD +   + D
Sbjct: 485 GVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPD-TDGVLHD 543

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             ++ K++ L  HSE+LAIA G+L  KPG  +R+ KNLR+C+DCH+ +KLIS++++ EII
Sbjct: 544 IDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREII 603

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           +RDR RFHHF+ G CSC DYW
Sbjct: 604 IRDRNRFHHFRMGGCSCKDYW 624


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/638 (41%), Positives = 378/638 (59%), Gaps = 41/638 (6%)

Query: 11  PTPQTHSHSIFNNNRNEGSF-NNHS--SLLSSLTECKSMSQLKQIHAQALRTAL---PQQ 64
           PTP +  H +F+   + G + N+H+  SL  S  + K+  + KQ+HA AL+ AL   P  
Sbjct: 106 PTPTSSLH-LFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHV 164

Query: 65  HKTLL-IYSR-------------------------IIHFASFADLDYAFRVFYQIENPNS 98
           H +L+ +YS+                         I  + S   +D A R+F +I   + 
Sbjct: 165 HTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDV 224

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
            +WN +I    +S   + +A+  F RM ++ +V P++ T    L AC +L +   GK   
Sbjct: 225 VSWNAMIAGYVQSGRFE-EALACFTRM-QEADVSPNQSTMVSVLSACGHLRSLELGKWIG 282

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
           + +  RG   ++ + N+L+  Y+ CG +  A K+FD M ++ ++ WN MI  +     ++
Sbjct: 283 SWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYE 342

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL-VTDVLVN 276
            AL LF  M +    P+  TF ++  ACA L  L LG W HAYI ++   +  V +V + 
Sbjct: 343 EALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLW 402

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            S+I MY KCG +++A QVF SM  R L SWN++I G A++G AE AL  F+ ++  E F
Sbjct: 403 TSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMI-NEGF 461

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ ITFVGVLSAC   G V  G  YF  M  +Y I+P L+HYGC++DLLAR+G  DEA 
Sbjct: 462 QPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAK 521

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
            L+ NM M+PD  IW SLL+AC + H  V   E VA+++ E E    SG YVLLS +YA 
Sbjct: 522 VLMGNMEMEPDGAIWGSLLNAC-RIHGQVEFGEYVAERLFELEPE-NSGAYVLLSNIYAG 579

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW+DV  +R  + DKG+ K PGC+SIEIDG+ HEF  GD  HPQ++ I+  LD +D  
Sbjct: 580 AGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRL 639

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           L+  G+ PD S+  + D  ++ K+ +L  HSE+LAIA G+++ KPG  IR+ KNLRVC++
Sbjct: 640 LEETGFVPDTSEV-LYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRN 698

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH  TKLIS+IFN EII RDR RFHHFKDG CSC D W
Sbjct: 699 CHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 219/459 (47%), Gaps = 85/459 (18%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQI 93
           L+ L +C  +  LKQIH+  +++ L   H TL   S++I F + +   DL YA  +F+ I
Sbjct: 29  LNLLAKCPDIPSLKQIHSLIIKSGL---HNTLFAQSKLIEFCALSPSRDLSYALSLFHSI 85

Query: 94  --ENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             + PN F WNTLIRA   S+   P  ++ LF +M+  G + P+ HTFP   K+CA   A
Sbjct: 86  HHQPPNIFIWNTLIRA--HSLTPTPTSSLHLFSQMLHSG-LYPNSHTFPSLFKSCAKSKA 142

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYA----------------------------- 181
             + KQ HAH  K  L    +++ SLIH Y+                             
Sbjct: 143 THEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITG 202

Query: 182 --SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
             S GH+D A ++FD +  + +VSWN MI  +VQ G F+ AL  F RMQ     P+  T 
Sbjct: 203 YVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTM 262

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+ SAC  L +L LG W  +++    D     ++ + N+L+DMY KCG +  AR++F+ 
Sbjct: 263 VSVLSACGHLRSLELGKWIGSWVR---DRGFGKNLQLVNALVDMYSKCGEIGTARKLFDG 319

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           M  +D+  WN++I G+      E AL  F+ +++ E+ +PN +TF+ VL AC   G +  
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFE-VMLRENVTPNDVTFLAVLPACASLGALDL 378

Query: 359 GR---DYFD-------------------VMINEYNITPVLEH------------YGCLVD 384
           G+    Y D                   VM  +     V E             +  ++ 
Sbjct: 379 GKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS 438

Query: 385 LLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCK 420
            LA  G+ + AL L   M     +PD + +  +L AC +
Sbjct: 439 GLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/642 (41%), Positives = 385/642 (59%), Gaps = 65/642 (10%)

Query: 26  NEGSFNNHSSLL--SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD- 82
           N   F + +SL   SS   CK+M  LKQ+HAQ ++TA   Q +  L  + ++ F++ +D 
Sbjct: 2   NSTIFTSTTSLWPPSSFFPCKTMQDLKQLHAQMIKTA---QIRDPLAAAELLRFSAVSDH 58

Query: 83  --LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             LDYA ++F  +  PN F++NTLIRA + S D    A+++F  M+E  +V P+  TFP 
Sbjct: 59  RDLDYARKIFRSMHRPNCFSYNTLIRALSESNDP-CDALLVFIEMVEDCSVEPNCFTFPS 117

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG---------------- 184
             KAC       +G+Q H    K GL SD ++ ++++  Y SCG                
Sbjct: 118 VFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVD 177

Query: 185 ------------------------------HLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
                                          L++A  +FD M +RS+VSWNVMI  + Q 
Sbjct: 178 GCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQS 237

Query: 215 GEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G F  A+++FR MQ+   P  Y T  S+  A + L  L LG W H Y +R+   ++  D 
Sbjct: 238 GHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN---NIGVDD 294

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           ++ ++LIDMY KCGS++ A QVFE +PKR++ +W++II G A+HGRA+  L +F+ +   
Sbjct: 295 VLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDME-R 353

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ +T++G+LSAC+H G+V+EGR +FD M+    + P +EHYGC+VDLL RAG ++
Sbjct: 354 AGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLE 413

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           E+  L+ NMP+KPD VIW++LL AC K H +V + + VA+ ++E      SG YV LS +
Sbjct: 414 ESEELILNMPIKPDDVIWKALLGAC-KMHGNVEMGKRVAEHLMELAPHD-SGSYVALSNI 471

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YAS   W  V  VR +M +  V K+PGCS IE+DG+ HEF   D SHP++K+I+  L  +
Sbjct: 472 YASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEM 531

Query: 514 DEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
              L   GY P+ +Q    +DE D  K+SSL  HSE++AIA G+++ +P  P+R+ KNLR
Sbjct: 532 SRNLILVGYRPNTTQVLTNMDEED--KESSLNYHSEKIAIAFGLISTQPQTPLRITKNLR 589

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +C+DCH   KLIS+I+  +IIVRDR RFHHF +GSCSCMDYW
Sbjct: 590 ICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/579 (42%), Positives = 361/579 (62%), Gaps = 13/579 (2%)

Query: 41  TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIENPN 97
           T C S+S+ KQ HA  LRT L       L  S++I F + +   DL+YA ++F Q++NP+
Sbjct: 19  THCTSISKTKQAHALLLRTHLLHNP---LFSSKLISFLALSHSGDLNYARKLFTQMQNPD 75

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
            F  NT+IR  ARS +   +A+ L+  M+E+G V  D +T+PF L ACA L A   G++ 
Sbjct: 76  PFICNTMIRGYARSQNPY-EAVSLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRF 133

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  + K G  SD+++ N+LI FY +CG    A  VFD    R +V+WN+MI+A +  G  
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 218 DSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           + A  L   M  L    PD  T  S+  ACA L  L  G + H+Y        +  D+++
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVL 253

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             +L+DMY KCGS+D+A QVF  M  R++ +WN++I G A+HG  E A+  FD++   + 
Sbjct: 254 ETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME-HDK 312

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ +TF+ +L AC+H G+V EG   F  M N++ I P +EHYGC+VDLL RA  +D+A
Sbjct: 313 LMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDA 372

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           L  + NMP+K ++V+W +LL AC +      L+E++ ++VIE E   C G YV+LS +YA
Sbjct: 373 LAFIENMPIKANSVLWATLLGAC-RSGGHFDLAEKIGRRVIELEPDSC-GRYVMLSNLYA 430

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
              +W+    +RK M +KG+ K PGCS IE++G+ H+F AGD SH QT+QIY  ++ +  
Sbjct: 431 GVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 490

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           ++   G     +   + D  ++ K+ SL LHSE+LAIALG+++   G PIR+ KNLRVC 
Sbjct: 491 RVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCN 550

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   K+ S+++N EI+ RDR+RFHHFK+GSCSCMD+W
Sbjct: 551 DCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/584 (42%), Positives = 363/584 (62%), Gaps = 18/584 (3%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQA-LRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           H+SL++   +   M+  + +  Q+  R A+          + I  +A +  +D A ++F 
Sbjct: 167 HTSLINMYAQSGEMNNAQLVFDQSNFRDAIS-------FTALIAGYALWGYMDRARQLFD 219

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   +  +WN +I   A+   +K +A++LF+ M  + NV P++ T    L ACA   A 
Sbjct: 220 EMPVKDVVSWNAMIAGYAQMGRSK-EALLLFEDM-RKANVPPNESTIVSVLSACAQSNAL 277

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G    + I  RGL S++ + N+LI  Y+ CG L  A ++FD+MLER ++SWNVMI  +
Sbjct: 278 DLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGY 337

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LFR M     EP   TF SI  +CA L  + LG W HAYI ++ +    
Sbjct: 338 THMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVST 397

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           +   ++ SLID+Y KCG++  ARQVF+ M  + L SWN++I G A+HG+A+ A + F ++
Sbjct: 398 S---LSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKM 454

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
              +   PN ITFVG+LSAC H G+V  G+ +F  M+ +Y I+P  +HYGC++DLL RAG
Sbjct: 455 S-SDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAG 513

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
             +EA  L+ NM +KPD  IW SLL AC + H  V L E VA+++ E E     G YVLL
Sbjct: 514 LFEEAESLLQNMEVKPDGAIWGSLLGAC-RDHGRVELGELVAERLFELEPD-NPGAYVLL 571

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA A +W+DV  +R  + D+G+ K PGC++IE+D + HEF  GD  HPQ++ IY  L
Sbjct: 572 SNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRML 631

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + +DE+LK  G+  D S+  + D  ++ K+ +L  HSE+LAIA G+++ KPG PIR+ KN
Sbjct: 632 EEVDEQLKVFGFVADTSEV-LYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKN 690

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CH  TKLIS+IFN EII RDR RFHHFKDGSCSC DYW
Sbjct: 691 LRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 46/414 (11%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQI 93
           L  L++C+S+   KQIHA  ++T L   H TL   S++I F++ +   D+ YA  +F  I
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGL---HNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           E PN F WN++IR  + S+ +   A+V F RMI  G V P+ +TFPF LK+CA L +  +
Sbjct: 90  EEPNLFIWNSMIRGLSMSL-SPALALVFFVRMIYSG-VEPNSYTFPFLLKSCAKLASAHE 147

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASC------------------------------ 183
           GKQ HAH+ K G VSDV+I+ SLI+ YA                                
Sbjct: 148 GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYAL 207

Query: 184 -GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
            G++D A ++FD M  + +VSWN MI  + Q G    AL LF  M+     P+  T  S+
Sbjct: 208 WGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA    L LG    ++I    D  L +++ + N+LIDMY KCG L  AR++F+ M +
Sbjct: 268 LSACAQSNALDLGNSMRSWIE---DRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLE 324

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD+ SWN +I G+      + AL  F R ++     P  ITF+ +L +C H G +  G+ 
Sbjct: 325 RDVISWNVMIGGYTHMCSYKEALALF-REMLASGVEPTEITFLSILPSCAHLGAIDLGK- 382

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +    IN+   +        L+DL A+ GNI  A  +   M +K  A  W +++
Sbjct: 383 WIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMI 435


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/623 (40%), Positives = 367/623 (58%), Gaps = 48/623 (7%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
            N++   L SL  CKSM+Q+KQ HA  + T L     T     +++  +SF  L YA ++
Sbjct: 12  LNSNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQL 71

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F QI  P+ F +NT+I+A A    +   ++ +F  M+     LP+++TF F  KAC    
Sbjct: 72  FDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGL 131

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
              +G+Q   H  K GL S++++ N++I  YA+ G +D A +VFD  L++ L SWN+MI 
Sbjct: 132 GVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIG 191

Query: 210 AFVQFGE-------------------------------FDSALKLFRRM-QILFEPDGYT 237
            +V  GE                               F  AL LF  M Q    P+ +T
Sbjct: 192 GYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFT 251

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN----SLIDMYCKCGSLDIAR 293
             S  +ACA L  L  G W H YI +       +++ +N     SL+DMY KCG +D A 
Sbjct: 252 LASALAACANLVALDQGRWIHVYIDK-------SEIKMNERLLASLLDMYAKCGEIDFAA 304

Query: 294 QVF--ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           +VF  E   K  +  WN++I G+A+HG+++ A+  F+++ VE+  SPN +TFV +L+AC+
Sbjct: 305 KVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEK-VSPNKVTFVALLNACS 363

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           H  +V EGR YF  M + Y I P +EHYGC+VDLL R+G + EA   V NMPM PDA IW
Sbjct: 364 HGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIW 423

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471
            +LL AC + H  +   + + K + E +     G +VLL+ +Y+++ +W++   VR+ + 
Sbjct: 424 GALLGAC-RIHKDIERGQRIGKIIKELDSDHI-GCHVLLANLYSASGQWDEAKAVRQKIE 481

Query: 472 DKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
             G  K PGCSSIE++G+ H+F  GD SHPQTKQ+Y FLD +  KLK+ GY P++ +  +
Sbjct: 482 VSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLL 541

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
             + ++ K+++L  HSE+LAIA G++N  PG  IR+ KNLRVC DCHE TK IS+++  E
Sbjct: 542 DIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKRE 601

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           IIVRDR R+HHFKDG CSC DYW
Sbjct: 602 IIVRDRIRYHHFKDGFCSCKDYW 624


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/591 (42%), Positives = 363/591 (61%), Gaps = 16/591 (2%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF----ADLD 84
           S +N +  LS L +C S+ +LKQ+ A A++T L   H  L + ++ I+F S       + 
Sbjct: 16  SNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHL---HSDLSVLTKFINFCSLNPTTTSMQ 72

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           +A  +F QI  P+   +NT+ R  AR+ D   +A  LF +++  G + PD +TFP  LKA
Sbjct: 73  HAHHLFDQIPQPDIVLFNTMARGYART-DTPLRAFTLFTQILFSG-LFPDDYTFPSLLKA 130

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           CA   A  +G+Q H    K GL  +VY+  +LI+ Y +C  +D A +VFD + E  +V++
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N MI  + +    + AL LFR +Q    +P   T  S+ S+CA L  L LG W H Y+ +
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
           +  +  V    V+ +LIDMY KCGSLD A  VFE+M  RD  +W+++I+ +A+HG    A
Sbjct: 251 NGFNRFVK---VDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKA 307

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           +  F  +  +    P+ ITF+G+L AC+H G+V EG +YF  M ++Y + P ++HYGC+V
Sbjct: 308 VSLFKEMR-KAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMV 366

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL RAG ++EA   +  +P++P  ++WR+LL AC   H +V L + V +Q+ E +    
Sbjct: 367 DLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSAC-GSHGNVELGKRVIEQIFELDDSH- 424

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
            G Y++LS + A A RW DV  VRKLM ++GV K PGCSS+E++ + HEFF+GD  H  +
Sbjct: 425 GGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVS 484

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
            +++  LD + ++LK  GY P+ S     D  D+ K+ +LR HSE+LAI  G+LN  PG 
Sbjct: 485 TKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGT 544

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IRV KNLRVC DCH   KLIS IF+ +II+RD  RFHHFKDG CSC DYW
Sbjct: 545 TIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/573 (43%), Positives = 353/573 (61%), Gaps = 14/573 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNSFTWN 102
           M  L+QIHA+ L    P    + LI S+I+ FA+   F + DYA ++F QI NP  F +N
Sbjct: 1   MQILRQIHARILTHVPPISSVSFLI-SKILSFAALSPFGNFDYARKIFSQIPNPGIFAYN 59

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           ++IR C  +     + I LF+ M+ +G   P+  T  F LKAC+ + A  +GKQ HA I 
Sbjct: 60  SVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQIL 119

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           + G  S  Y+ +SL++FY+ C  + +A KVFD + ER+LV W+ M+  + + G  + AL 
Sbjct: 120 RSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALI 179

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +FR MQ++  EPD  +   + SACA +  L +G W HAYI +   H    D+ +N +LI+
Sbjct: 180 MFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIH---VDLELNTALIN 236

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG ++ AR++F+ M  +D  +W+S+I+G A+HG AE AL  F R+  E    PN +
Sbjct: 237 MYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRM-EEAQAKPNHV 295

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TF+G+LSAC H G+VS+G+ Y+  M+ E  I P +EHYGC+VDLL R G IDEA      
Sbjct: 296 TFIGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALI 354

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           +P  PD VIWR+LL A  K    +  +E VA +++E E       Y++L+ +YAS  +  
Sbjct: 355 IP-TPDPVIWRTLLVAYTKNRM-LQKAEMVAGKLLELEPWKAEN-YIILANLYASVSQLE 411

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
            V  VRK+M + G+   PGC+SIE+DG  H F  GD SHP+ ++I   L  +  K+   G
Sbjct: 412 KVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISG 471

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           Y P  S    +   D+ K++ L  HSERLAIA G++  K    IR+ KNLRVC DCHEVT
Sbjct: 472 YKPFVSVVLHLVN-DEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVT 530

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+IS+I++ EIIVRDR RFH F +G+CSC DYW
Sbjct: 531 KIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 18/311 (5%)

Query: 13  PQTHSHSIFNNNRNEGSFN-NHSSLLSSLTECK---SMSQLKQIHAQALRTALPQQHKTL 68
           P      +F +   +G  N N  ++   L  C    ++ + KQIHAQ LR+       + 
Sbjct: 71  PSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSS---SP 127

Query: 69  LIYSRIIHFAS-FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            + S +++F S   ++  A +VF +I   N   W+ ++   AR +    +A+++F+ M  
Sbjct: 128 YVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYAR-LGMINEALIMFREMQV 186

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
            G + PD+ +    L ACA + A   GK  HA+I KR +  D+ +N +LI+ YA CG ++
Sbjct: 187 VG-IEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIE 245

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
            A ++FD M  +   +W+ MI      G  + AL +F RM +   +P+  TF  I SACA
Sbjct: 246 KAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACA 305

Query: 247 --GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
             GL +     W+    L      +   +     ++D+ C+ G +D A      +P  D 
Sbjct: 306 HGGLVSDGKRYWSSMLEL-----GIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDP 360

Query: 305 TSWNSIILGFA 315
             W ++++ + 
Sbjct: 361 VIWRTLLVAYT 371


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/609 (42%), Positives = 360/609 (59%), Gaps = 37/609 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTL--------------LIYSR----- 73
           L  S T+ K+  + KQ+HA AL+ AL   P  H ++              L++ +     
Sbjct: 137 LFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRD 196

Query: 74  -------IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
                  I  + S   LD A R+F +I   +  +WN +I    +S   + +AIV F  M 
Sbjct: 197 AVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFE-EAIVCFYEM- 254

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           ++ NVLP+K T    L AC +  +   GK   + +   G  S++ + N+LI  Y  CG  
Sbjct: 255 QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC 245
           D+A ++FD + E+ ++SWN MI  +     ++ AL LF  M +   +P+  TF  I  AC
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  L LG W HAYI ++  +S  ++  +  SLIDMY KCG ++ A +VF SM  R+L 
Sbjct: 375 ACLGALDLGKWVHAYIDKNLRNS--SNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLA 432

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN+++ GFA+HG AE AL  F  +V +  F P+ ITFVGVLSAC   G+V  G  YF  
Sbjct: 433 SWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRS 492

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           MI +Y I+P L+HYGC++DLLARA   +EA  L+ NM M+PD  IW SLL A CK H  V
Sbjct: 493 MIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSA-CKAHGRV 551

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
              E VA+++ + E    +G +VLLS +YA A RW+DV  +R  + DKG+ K PGC+SIE
Sbjct: 552 EFGEYVAERLFQLEPE-NAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIE 610

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           IDG  HEF  GD  HP+   IY  L+ +D+ L+  G+ P+ S+  + D  ++ K+ +L  
Sbjct: 611 IDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSE-VLYDMDEEWKEGALSQ 669

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAI+ G++  KPG  IR+ KNLRVC +CH  TKLIS+IFN EII RDR RFHHFKD
Sbjct: 670 HSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 729

Query: 606 GSCSCMDYW 614
           G CSC D W
Sbjct: 730 GFCSCNDCW 738



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 213/421 (50%), Gaps = 52/421 (12%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVF--- 90
           L+ L +CK+++  KQIH+  ++T L   + T+ + S++IHF + +   DL YA  +F   
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTGL---NNTVFVQSKLIHFCAVSPSGDLSYALSLFEEN 88

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            Q    N F WN+LIR  + S        +   RM+  G V P+ HTFPF  K+C    A
Sbjct: 89  QQHHKHNVFIWNSLIRGYSLSSSPLSSLHLF-SRMLYYG-VQPNSHTFPFLFKSCTKAKA 146

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL---------------------- 188
             +GKQ HAH  K  L  + +++ S+IH YAS G +D                       
Sbjct: 147 THEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITG 206

Query: 189 ---------ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ---ILFEPDGY 236
                    A ++FD +  + +VSWN MI  +VQ G F+ A+  F  MQ   +L  P+  
Sbjct: 207 YVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL--PNKS 264

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T   + SAC    +  LG W  +++    D+   +++ + N+LIDMYCKCG  DIAR++F
Sbjct: 265 TMVVVLSACGHTRSGELGKWIGSWVR---DNGFGSNLQLTNALIDMYCKCGETDIARELF 321

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           + + ++D+ SWN++I G++     E AL  F+ +++  +  PN +TF+G+L AC   G +
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFE-VMLRSNVKPNDVTFLGILHACACLGAL 380

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
             G+     +      +     +  L+D+ A+ G I+ A  +  +M  + +   W ++L 
Sbjct: 381 DLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSR-NLASWNAMLS 439

Query: 417 A 417
            
Sbjct: 440 G 440



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 137/316 (43%), Gaps = 40/316 (12%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA--SCGHLDLANK 191
           ++H +   L+ C  +  F   KQ H+ I K GL + V++ + LIHF A    G L  A  
Sbjct: 27  EQHPYLNLLEKCKNINTF---KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALS 83

Query: 192 VFDNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           +F+   +    ++  WN +I  +       S+L LF RM     +P+ +TF  +  +C  
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTK 143

Query: 248 LATLSLGMWAHAYILRHC----------------------------DHSLVTDVLVNNSL 279
                 G   HA+ L+                              D S + D +   +L
Sbjct: 144 AKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTAL 203

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           I  Y   G LD AR++F+ +P +D+ SWN++I G+   GR E A+  F  +  E +  PN
Sbjct: 204 ITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM-QEANVLPN 262

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
             T V VLSAC H      G+ +    + +      L+    L+D+  + G  D A  L 
Sbjct: 263 KSTMVVVLSACGHTRSGELGK-WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELF 321

Query: 400 SNMPMKPDAVIWRSLL 415
             +  K D + W +++
Sbjct: 322 DGIEEK-DVISWNTMI 336


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/628 (38%), Positives = 365/628 (58%), Gaps = 58/628 (9%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           +  +  CKSM +LKQ+HA  ++T     +       R+   + F D+ YA  VF Q+   
Sbjct: 19  VPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           N F WNT+IRA A + D    A+++F +M+ +  V P++ TFP  LKACA +   ++GKQ
Sbjct: 79  NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN-------------------------- 190
            H  + K GLV D ++  +L+  Y  CG ++ AN                          
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFN 198

Query: 191 ---------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
                                ++FD M +RS+VSWNVMI  + Q G +  A+++F RM  
Sbjct: 199 VVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQ 258

Query: 230 LFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           + +  P+  T  S+  A + L  L LG W H Y  ++    +  D ++ ++L+DMY KCG
Sbjct: 259 MGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKN---KIRIDDVLGSALVDMYAKCG 315

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           S++ A QVFE +P+ ++ +WN++I G A+HG+A     Y  R+  +   SP+ +T++ +L
Sbjct: 316 SIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRME-KCGISPSDVTYIAIL 374

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SAC+H G+V EGR +F+ M+N   + P +EHYGC+VDLL RAG ++EA  L+ NMPMKPD
Sbjct: 375 SACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPD 434

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
            VIW++LL A  K H ++ +    A +V+       SG YV LS +YAS+  W+ V  VR
Sbjct: 435 DVIWKALLGA-SKMHKNIKIGMRAA-EVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVR 492

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
            +M D  + K+PGCS IEIDG+ HEF   D SH + K I+  L+ I  KL   G+ PD +
Sbjct: 493 LMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTT 552

Query: 528 QAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           Q  +  ++D+  K+S L  HSE++A+A G+++  P  P+ + KNLR+C+DCH   KLIS+
Sbjct: 553 QVLL--KMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISK 610

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++  +I++RDR RFHHF+ GSCSCMDYW
Sbjct: 611 MYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/615 (41%), Positives = 367/615 (59%), Gaps = 49/615 (7%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-----ASFADLDYAFRVFY 91
           L SL  C  ++ LK IHA  +RT +      +   SR+I F     +  + +DYA R+F 
Sbjct: 21  LFSLETCSDLTHLKIIHAYMIRTHIICD---VFAASRLIAFCVDPSSGTSLIDYASRIFS 77

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           QI+NPN F +N +IR  + S +   QA   + +   QG +LPD  TFPF +K+C  L   
Sbjct: 78  QIQNPNLFIFNAMIRGHSGSKNPD-QAFHFYVQSQRQG-LLPDNLTFPFLVKSCTKLHCI 135

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----------------------------- 182
           S G QAH HI K G   DVY+ NSL+H YA+                             
Sbjct: 136 SMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGF 195

Query: 183 --CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
             CG ++ A K+FD M E++LV+W+ MI  + Q   FD A++LF+ +Q      +     
Sbjct: 196 NKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMV 255

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+ S+CA L  L LG  AH Y++++    +  ++++  +L+DMY +CGS+D A  VFE +
Sbjct: 256 SVISSCAHLGALELGERAHDYVVKN---GMTLNLILGTALVDMYARCGSIDKAVWVFEDL 312

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
           P+RD  SW ++I G A+HG +E +LKYF  +V E   +P  ITF  VLSAC+H G+V  G
Sbjct: 313 PERDTLSWTALIAGLAMHGYSERSLKYFATMV-EAGLTPRDITFTAVLSACSHGGLVERG 371

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
              F+ M  ++ + P LEHYGC+VDLL RAG ++EA   V  MP+KP+A +W +LL AC 
Sbjct: 372 FQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGAC- 430

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H +  + E V K +I+      SG YVLLS +YA+A+ W  V  +R++M  KG+ K P
Sbjct: 431 RIHKNAEIGERVGKILIQLLPQ-HSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPP 489

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           G S IE+DG  H+F  GD+SHP+  +I    + I  ++++ GY  + + A + D  ++ K
Sbjct: 490 GHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADA-LFDIDEEEK 548

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           +S+L  HSE+LAIA G++  + G PIR+ KNLRVC+DCH  TKLIS++F  E+IVRDR R
Sbjct: 549 ESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNR 608

Query: 600 FHHFKDGSCSCMDYW 614
           FHHF+ G CSCMDYW
Sbjct: 609 FHHFRQGLCSCMDYW 623


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/587 (42%), Positives = 357/587 (60%), Gaps = 16/587 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF---ADLDYAFR 88
           +  SL++++  C  +  LK I A  +R  L Q      + S++I  ++      + YA R
Sbjct: 6   DQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQD---TFLTSKLIESSAVTLSGHVAYAHR 62

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F    +PN F WNT+IR  + S D+   AI L++ M   G + P+ +TF F LKAC  L
Sbjct: 63  IFSCTHHPNLFMWNTIIRGYSIS-DSPITAIALYRDMFLCG-ISPNSYTFGFVLKACCKL 120

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +G++ H+ I K GL  +  + N LI  YA+CG +D A  +FD M E    SW+ M+
Sbjct: 121 LRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMV 180

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G+   ALKLFR MQ      D +T  S+   C  L  L LG W H+Y+ +    
Sbjct: 181 SGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKE--- 237

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            +  DV++  +L+ MY KCGSLD A +VF+ M +RD+T+W+++I G+A+HG  E AL+ F
Sbjct: 238 GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLF 297

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           D +   ++  PN +TF  VLSAC+H G+V +G   F+ M  EY ITP ++HYGC+VDL  
Sbjct: 298 DAMKRSKTI-PNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFC 356

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +  A   +  MP++P+ V+WR+LL AC K H    L E +++++++ +       Y
Sbjct: 357 RAGMVGHAHKFIQTMPIEPNVVLWRTLLGAC-KTHGYKDLGEHISRKILKLDPSSPEN-Y 414

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VL+S VYAS  RW+ V  VR LM DK   K+ G SSIEI+ + H+F  GD SHP+ ++IY
Sbjct: 415 VLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIY 474

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
           G L  +  KLK  G+  + +   + D  ++ K+ +L LHSERLAIA G+L+   G PIR+
Sbjct: 475 GMLHQMARKLKQVGHV-NSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRI 533

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC+DCHEV KLIS ++N EIIVRDR RFHHF++  CSC DYW
Sbjct: 534 VKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/593 (41%), Positives = 359/593 (60%), Gaps = 19/593 (3%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQ----QHKTLLIYSRIIHFASFAD 82
           +G   +  +  S    C++ S+ KQIH  + +         Q+  + +YS      S   
Sbjct: 82  QGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVS--- 138

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
              A +VF ++E+    +W T+I   A+  D   +A+ LF RM++  NV P++ T    L
Sbjct: 139 ---ARKVFDKMEDKTVVSWATMIGVHAQ-WDQPNEAVRLFDRMMKSENVKPNEVTLVNVL 194

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            ACA     +  K+ H +I + G    V +N  L+  Y  CG + LA  +FD   E++L 
Sbjct: 195 TACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLF 254

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN+MI+  V+   ++ AL LFR MQ    + D  T  S+  AC  L  L LG W HAYI
Sbjct: 255 SWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYI 314

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            +     +  DV +  +L+DMY KCGS++ A QVF  MP++D+ +W ++ILG A+ G+AE
Sbjct: 315 KKQ---RIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAE 371

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+YFD + ++    P++ITFVGVL+AC+H G V EG  +F+ M + Y I P +EHYG 
Sbjct: 372 NALQYFDEMHIK-GVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGG 430

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           LVD+L RAG I EA  L+ +MPM PD  +   LL AC + H ++  +E  AKQ++E +  
Sbjct: 431 LVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGAC-RIHGNLEAAERAAKQLLEIDP- 488

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             SG YVLLS +Y S+++W +    R+LM ++G+ K PGCS IE+ G+ HEF  GD+SH 
Sbjct: 489 YHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHR 548

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           Q+ +I   L+ +  KLK+ GY PD S+  + D  ++ K++ L LHSE+LAIA G+L+   
Sbjct: 549 QSSEINEMLEDMISKLKNAGYVPDKSEV-LFDMAEEEKETELSLHSEKLAIAFGLLSTSV 607

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G PIRV KNLR+C DCH  TKLIS+++N EIIVRDR RFHHFKDG+CSC  +W
Sbjct: 608 GTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 206/378 (54%), Gaps = 25/378 (6%)

Query: 46  MSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFAD---LDYAFRVFYQIENPNSF 99
           MSQLKQIHAQ LRT L   P         S+I+ F S  +   L YA  VF QI NP S+
Sbjct: 1   MSQLKQIHAQMLRTGLFFDP------FTASKIVAFCSLQESGSLQYARLVFSQIPNPTSY 54

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           T N++IR C    +   +A++ +Q M+ QG ++PD++TFP   K+C      S+GKQ H 
Sbjct: 55  TCNSIIRGCTDK-NLHQEALLFYQEMMVQG-LIPDRYTFPSLFKSCR---NSSEGKQIHC 109

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           H  K G  SD Y  N+L++ Y++CG L  A KVFD M ++++VSW  MI    Q+ + + 
Sbjct: 110 HSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNE 169

Query: 220 ALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           A++LF RM      +P+  T  ++ +ACA    L++    H YI    +H     V++N 
Sbjct: 170 AVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYID---EHGFGRHVVLNT 226

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
            L+D+YCKCG + +AR +F+   +++L SWN +I G       E AL  F R +  +   
Sbjct: 227 VLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLF-REMQTKGIK 285

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
            + +T   +L AC H G +  G+ +    I +  I   +     LVD+ A+ G+I+ A+ 
Sbjct: 286 GDKVTMASLLLACTHLGALELGK-WLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQ 344

Query: 398 LVSNMPMKPDAVIWRSLL 415
           +   MP K D + W +L+
Sbjct: 345 VFHEMPEK-DVMTWTALI 361


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/576 (42%), Positives = 357/576 (61%), Gaps = 15/576 (2%)

Query: 45  SMSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP-NSF 99
           S+++L+QIHA ++R  +     +  K L+ Y  ++   S   + YA +VF +IE P N F
Sbjct: 29  SLTKLRQIHAFSIRNGVSISDAELGKHLIFY--LVSLPSPPPMSYAHKVFSKIEKPINVF 86

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            WNTLIR  A  +     A+ L++ M   G V PD HT+PF LKA   +     G+  H+
Sbjct: 87  IWNTLIRGYAE-IGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHS 145

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            + + G  S +Y+ NSL+H YA+CG +  A KVFD M E+ LV+WN +I+ F + G+ + 
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL L+  M +   +PDG+T  S+ SACA +  L+LG   H Y+++     L  ++  +N 
Sbjct: 206 ALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV---GLTRNLHSSNV 262

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+D+Y +CG ++ A+ +F+ M  ++  SW S+I+G A++G  + A++ F  +  +E   P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLP 322

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
             ITFVG+L AC+H GMV EG +YF  M  EY I P +EH+GC+VDLLARAG + +A   
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MPM+P+ VIWR+LL AC   H    L+E    ++++ E    SG YVLLS +YAS +
Sbjct: 383 ILKMPMQPNVVIWRTLLGACT-VHGDSDLAELARMKILQLEPN-HSGDYVLLSNMYASEQ 440

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW+DV  +RK M   GV K PG S +E+    HEF  GD SHPQ   IY  L  + ++L+
Sbjct: 441 RWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLR 500

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             GY P  S    VD  ++ K+++L  HSE++AIA  +++     PIRV KNL+VC DCH
Sbjct: 501 LEGYVPQISN-VYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCH 559

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              KL+S+++N EI+VRDR+RFHHFK+GSCSC DYW
Sbjct: 560 LAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/664 (39%), Positives = 366/664 (55%), Gaps = 109/664 (16%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNSFTWNTL 104
           +++Q+HA +L+TA+        + SR++   S     DL YA  +F +I+  +   WNT+
Sbjct: 28  EVEQLHAFSLKTAIFNHP---FVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I+ C          IVLF  ++ +   LPD  T P  +K CA L    +GKQ H    K 
Sbjct: 85  IK-CYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKI 141

Query: 165 GLVSDVYIN-------------------------------NSLIHFYASCGHLDLA---- 189
           G  SDV++                                NSLI  YA CG +D+A    
Sbjct: 142 GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF 201

Query: 190 ---------------------------NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
                                       K+FD M  R+LVSWN MI+ +++ G+FDSAL+
Sbjct: 202 EEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALE 261

Query: 223 LFRRMQI------------------------LF--------EPDGYTFQSITSACAGLAT 250
           LF +M I                        +F         P   T  S+ SA +GLA 
Sbjct: 262 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G W H+Y+ ++       D ++  SLI+MY KCG ++ A  VF ++ K+ +  W +I
Sbjct: 322 LGKGRWIHSYMEKN---GFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAI 378

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G  +HG A  AL  F  +  +    PN+I F+GVL+ACNH G+V +GR YFD+M+NEY
Sbjct: 379 IVGLGIHGMANHALALFLEMC-KTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEY 437

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I P LEHYGCLVD+L RAG+++EA + + NMP+ P+ VIW SLL    + H  + + E 
Sbjct: 438 KIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGS-RNHGKIDIGEY 496

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            A++VIE       G Y+LLS +YA++  W  V  VR++M  +G  K+PGCSS+E  G  
Sbjct: 497 AAQRVIEVAPETI-GCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTL 555

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           HEF  GD SHPQTK+IY  +  + EKLK  G+ PD +Q  +  E +  K++ L  HSERL
Sbjct: 556 HEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERL 615

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G++N+KPG+PIR+ KNLRVC DCH VTKL+S+I++ EIIVRD  RFHHFK+GSCSC
Sbjct: 616 AIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSC 675

Query: 611 MDYW 614
           MDYW
Sbjct: 676 MDYW 679


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/580 (44%), Positives = 360/580 (62%), Gaps = 24/580 (4%)

Query: 45  SMSQLKQIHAQALRTA--LPQQHKTLLIYSRIIHFASF--ADLDYAFRVFYQI-ENPNSF 99
           S++  KQ+HA+ALR A  +   H  LL    + H A+     L YA  V   +  +P+ F
Sbjct: 33  SLATAKQLHARALRAAPGVTPSHP-LLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDPF 91

Query: 100 TWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
           + NT++R  A S  A+P+ A+ L +R +      PD HT+P  L+ACA L A   G+  H
Sbjct: 92  SLNTVLRIFASS--ARPRVALALHRRHLAP----PDTHTYPPLLQACARLLALRYGEGLH 145

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGE 216
           A   K GLVS V++ NSL+H Y +CG  + A++VFD +   ER+LVSWN +++ F   G 
Sbjct: 146 AEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGR 205

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            +  L +FR M ++ F PDG+T  S+ +ACA +  L+LG   H ++ +     LV +   
Sbjct: 206 PNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKV---GLVGNAHA 262

Query: 276 NNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
            N+LID+Y KCG +D AR++F  M   R + SW S+I+G A++G    AL+ F  ++  E
Sbjct: 263 GNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFS-MMERE 321

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P  IT VGVL AC+H G+V +G  YFD M  EY ITP +EH GC+VDLL RAG ++E
Sbjct: 322 KLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEE 381

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A + ++ MP++P+AV+WR+LL AC   H  + + E    +++E + G  SG YVLLS +Y
Sbjct: 382 AHNYITTMPLEPNAVVWRTLLGACAM-HKKLEIGEAAWARLVELDPG-HSGDYVLLSNLY 439

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A   RW DV ++RK M   GV K PG S +E+    +EF  GD SHP+T QIY  L  I 
Sbjct: 440 AGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIA 499

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           E+L+ +GY P  S   + D  D+ K+S+L  HSERLAIA  +L   PG PIR+ KNLRVC
Sbjct: 500 ERLRRQGYIPHTSNV-LADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVC 558

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH   KLIS++++ EIIVRDR+RFHHFK G+CSC DYW
Sbjct: 559 GDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/637 (40%), Positives = 372/637 (58%), Gaps = 50/637 (7%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           PP+P T S    +   +  S N  + L+    + K++S L QIHA   R  L   H  +L
Sbjct: 10  PPSPATGSPPTTSTTHHFISTNRLAVLID---KSKTISHLLQIHAVLFRHGL--DHHPIL 64

Query: 70  IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
            +     +AS   LDY+  +F + +NP+ F W  +I   A       QA+  + +M+ QG
Sbjct: 65  NFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR-GLHEQALNFYAQMLTQG 123

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            V P+  TF   LK C        GK  H+   K G  SD+Y+   L+  YA  G +  A
Sbjct: 124 -VEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 178

Query: 190 NKVFDNMLERSLVS-------------------------------WNVMIDAFVQFGEFD 218
            ++FD M E+SLVS                               WNVMID + Q G  +
Sbjct: 179 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 238

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            AL LFRRM +   +P+  T  S+ SAC  L  L  G W H+YI    ++ +  +V V  
Sbjct: 239 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE---NNGIQFNVHVGT 295

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+DMY KCGSL+ AR VF+ +  +D+ +WNS+I+G+A+HG ++ AL+ F  +       
Sbjct: 296 ALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMC-RMGLH 354

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P +ITF+G+LSAC H G V+EG D F+ M +EY I P +EHYGC+V+LL RAG++++A  
Sbjct: 355 PTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYE 414

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           LV NM ++PD V+W +LL AC + H  + L E++ + +++ +    SG Y+LLS +YA+ 
Sbjct: 415 LVKNMNIEPDPVLWGTLLGAC-RLHGKIALGEKIVELLVD-QNLANSGTYILLSNIYAAV 472

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
             W+ V  +R +M D GV KEPGCSSIE++   HEF AG  +HP+ K+IY  L+ I+  L
Sbjct: 473 GNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWL 532

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           KS GYTP  +   + D  +  K+ SL +HSE+LAIA G++N +PG  I++ KNLRVC DC
Sbjct: 533 KSHGYTPQ-TDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADC 591

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           HEVTKLIS+I   +I+VRDR RFHHF +GSCSC DYW
Sbjct: 592 HEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/611 (42%), Positives = 371/611 (60%), Gaps = 28/611 (4%)

Query: 13  PQTHSHSIFNNNRNEGSFNNHSSLLSSL-TECK-SMSQLKQIHAQALRTALPQQHKTLLI 70
           P  H H I N +  E S  +H ++L  L T+C  S+  LKQ HA  LRT   Q   + + 
Sbjct: 33  PYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQD--SYIA 90

Query: 71  YSRIIHFASFADLDY-----AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
            S +  +A+ +   Y     + RVF  +  PN F WN +I+ C  + +   +AI+L+  M
Sbjct: 91  GSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIEN-NEPFKAILLYYEM 149

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +   +  P+K+T+P  LKAC+     ++G Q HAH+ K GL  D +I +S I  YAS G 
Sbjct: 150 M-VAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGR 208

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSA 244
           L  A ++ D+  +   V    M D   + G F  AL++F +MQ     P  +   S+ SA
Sbjct: 209 LVEARRILDD--KGGEVDAVCMPD---RKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSA 263

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA L  L  G W H Y  R+   S+  D ++  SL+DMY KCG +D+A +VFE M  +++
Sbjct: 264 CANLGALDQGRWIHTYAKRN---SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEV 320

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
           +SWN++I G A+HGRAE A+  F ++      +PN ITFVGVL+AC H G+V +G   F+
Sbjct: 321 SSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFVGVLNACAHGGLVQKGLTIFN 376

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M  EY + P +EHYGC+VDLL RAG + EA  +VS++P +P   +W +LL AC +KH +
Sbjct: 377 SMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGAC-RKHGN 435

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V L E V K ++E E    SG Y LLS +YA A RW +VG VRKLM ++G+   PG S I
Sbjct: 436 VELGERVGKILLELEPQ-NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 494

Query: 485 EID-GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           ++  G  H+F  GD SHPQ K IY  LD + E+L+  GY PD SQ  + D  ++ K++++
Sbjct: 495 DLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV-LFDIDEEEKETAV 553

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAI  G++N  PG  IR+ KNLRVC+DCH  TKLIS+++N EIIVRDR R+HHF
Sbjct: 554 WQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHF 613

Query: 604 KDGSCSCMDYW 614
           ++G+CSC D+W
Sbjct: 614 RNGACSCKDFW 624


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/576 (42%), Positives = 355/576 (61%), Gaps = 15/576 (2%)

Query: 45  SMSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP-NSF 99
           S+++L+QIHA ++R  +     +  K L+ Y  ++   S   + YA +VF +IE P N F
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFY--LVSLPSPPPMSYAHKVFSKIEKPINVF 86

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            WNTLIR  A  +     A  L++ M   G V PD HT+PF +KA   +     G+  H+
Sbjct: 87  IWNTLIRGYAE-IGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            + + G  S +Y+ NSL+H YA+CG +  A KVFD M E+ LV+WN +I+ F + G+ + 
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL L+  M     +PDG+T  S+ SACA +  L+LG   H Y+++     L  ++  +N 
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV---GLTRNLHSSNV 262

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+D+Y +CG ++ A+ +F+ M  ++  SW S+I+G A++G  + A++ F  +   E   P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
             ITFVG+L AC+H GMV EG +YF  M  EY I P +EH+GC+VDLLARAG + +A   
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           + +MPM+P+ VIWR+LL AC   H    L+E    Q+++ E    SG YVLLS +YAS +
Sbjct: 383 IKSMPMQPNVVIWRTLLGACT-VHGDSDLAEFARIQILQLEPN-HSGDYVLLSNMYASEQ 440

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW+DV  +RK M   GV K PG S +E+    HEF  GD SHPQ+  IY  L  +  +L+
Sbjct: 441 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 500

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           S GY P  S    VD  ++ K++++  HSE++AIA  +++     PI V KNLRVC DCH
Sbjct: 501 SEGYVPQISN-VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCH 559

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              KL+S+++N EI+VRDR+RFHHFK+GSCSC DYW
Sbjct: 560 LAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/651 (39%), Positives = 375/651 (57%), Gaps = 67/651 (10%)

Query: 19  SIFNNNRNEGSFNNHSSLLSS--LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +I+N NR   +F+    L+ S   T CK+   LKQ+HA  ++T    Q +  L  + +I 
Sbjct: 4   TIYNPNRT-FNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTG---QIQDPLTAAEVIK 59

Query: 77  FASFA--DLDYAFRVFYQIENPNSFTWNTLIRACARSVDA--KPQAIVLFQRMIEQGNVL 132
           F +F+  D+DYA  VF Q+  PN F WNT++R  A + D   + +A++LF  M+  G V 
Sbjct: 60  FCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVK 119

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC--------- 183
           P++ TFP  LKACA      +GKQ H  I K G   D ++ ++L+  Y  C         
Sbjct: 120 PNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179

Query: 184 --------------------------------------GHLDLANKVFDNMLERSLVSWN 205
                                                 G +  A  +FD M +RS+VSWN
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWN 239

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           VMI  + Q G F  A+ LF+ MQ    +P+  T  S+  A A +  L LG W H Y  ++
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               +  D ++ ++L+DMY KCGS+D A QVFE++PKR+  +W++II  FA+HGRAE A+
Sbjct: 300 ---KIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAI 356

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
            +F  L+ +   +PN + ++G+LSAC+H G+V EGR +F  M+    + P +EHYGC+VD
Sbjct: 357 IHF-HLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVD 415

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL RAG+++EA  L+ NMP++PD VIW++LL A CK H ++ + E VA+ ++E      S
Sbjct: 416 LLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA-CKMHKNLKMGERVAETLMELAPHD-S 473

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YV LS +YAS   W  V  VR  M    + K+PGCS IEI GI HEF   D SH + K
Sbjct: 474 GSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAK 533

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           +I   L  +  KL+S GY P+  +  +  DE +  +  +L+ HSE++A+A G+++  P  
Sbjct: 534 EIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERAR--ALQYHSEKIAVAFGLISTAPQH 591

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P+++ KNLR+C+DCH   KLIS I+  +IIVRDR RFH F+ GSCSCMDYW
Sbjct: 592 PLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/588 (41%), Positives = 355/588 (60%), Gaps = 24/588 (4%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL----DYAFRVFYQ 92
           L+ L  C ++ +L QIH   L+  L   H   L+ ++   FAS + L    DYA    + 
Sbjct: 33  LALLQACNALPKLTQIHTHILKLGL---HNNPLVLTK---FASISSLIHATDYAASFLFS 86

Query: 93  IENP----NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
            E      ++F +NTLIRA A++  +K +A+ L+  M+    +LP+K T+PF LKACA L
Sbjct: 87  AEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDA-ILPNKFTYPFVLKACAGL 145

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC-GHLDLANKVFDNMLERSLVSWNVM 207
              + G+  H  + K G   D+++ N+++H Y+ C G ++ A KVFD M +   V+W+ M
Sbjct: 146 EVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAM 205

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + + G    A+ LFR MQ+    PD  T  S+ SAC  L  L LG W  AYI RH  
Sbjct: 206 IGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEI 265

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           H  V    V+N+LIDM+ KCG +  A ++F +M ++ + SW S+I+G A+HGR + A   
Sbjct: 266 HKPVE---VSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCL 322

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+ +      +P+ + F+G+LSAC+H G+V  GR+YF  M+ +Y + P +EHYGC+VD+ 
Sbjct: 323 FEEMT-SSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMY 381

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R G + EAL  V NMP++P+ VI R+L+ AC + H    L E++ K +++ E  +    
Sbjct: 382 CRTGLVKEALEFVRNMPIEPNPVILRTLVSAC-RGHGEFKLGEKITKLLMKHEP-LHESN 439

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +YA    W     +R++M  KG+ K PG + IEID   +EF AGD SH Q K+I
Sbjct: 440 YVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEI 499

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  +D +  ++K  GY P  S+  ++D  ++ K+ SL  HSE+LAIA G+L   PG PIR
Sbjct: 500 YEMVDEMGREMKKSGYRPSTSEV-LLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIR 558

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + KNLRVC DCH  +K IS+I++ EII+RDR RFHHFK G CSC D+W
Sbjct: 559 IVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 368/614 (59%), Gaps = 46/614 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQ 92
           +L  L+ CK++  L QIHAQ + T +   +    + SRI+ FA+ +    + YA  +FY+
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDN---FVASRILSFAALSPHGSIPYARFLFYR 94

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I  P+ F  NTLIRA A S +    A+V +  M E   V PD HTFP  LKAC+ + +  
Sbjct: 95  IRKPDIFIANTLIRAYAFSPNPI-DAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLR 153

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN----------------- 195
            G+  H+H+FK G  S+V ++N L+  YASCG ++ A  VFD                  
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213

Query: 196 --------------MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQS 240
                         M +R +VSW+VMI+ +VQ   F   L LF+ M     EP+     +
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVN 273

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             SACA L  +  G W   Y+ R    ++   V +  +LIDMY KCGS++ A +VF  M 
Sbjct: 274 ALSACAHLGAMEQGQWIERYMERK---NVRLTVRLGTALIDMYSKCGSVERALEVFHKMK 330

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           ++++ +W+++I G A++G+ + AL  F ++ ++    PN +TF+G+L+AC+H  +V EG 
Sbjct: 331 EKNVLAWSAMINGLAINGQGKDALNLFSQMEMQ-GVKPNEVTFIGILNACSHSKLVDEGC 389

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            +F  M + Y + P   H+ C+VDL  RAG +D+A  ++ +MP KP++ IW +LL+AC +
Sbjct: 390 SFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNAC-R 448

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H    L E+V K+++E +     G YVLLS +YA+  RW+ V  +R++M ++ V+K PG
Sbjct: 449 IHGDTELGEQVGKRLLELDPNH-GGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPG 507

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
           CS I++    HEF AGD+SHPQ + IY  L  + ++LK+ GY PD  Q  ++D  ++ K+
Sbjct: 508 CSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQV-LLDMDEEEKE 566

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
           ++L  HSE+LAIA G++   PG  IR+ KNLRVC DCH  TKLIS+I+N EIIVRDR RF
Sbjct: 567 TALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRF 626

Query: 601 HHFKDGSCSCMDYW 614
           HHF+DGSCSCMD+W
Sbjct: 627 HHFRDGSCSCMDFW 640



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 99/213 (46%), Gaps = 9/213 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI---YSRIIH 76
           +F +   E    N S L+++L+ C  +  ++Q   Q +   + +++  L +    + I  
Sbjct: 255 LFQDMMGEKIEPNESVLVNALSACAHLGAMEQ--GQWIERYMERKNVRLTVRLGTALIDM 312

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    ++ A  VF++++  N   W+ +I   A +   K  A+ LF +M  QG V P++ 
Sbjct: 313 YSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGK-DALNLFSQMEMQG-VKPNEV 370

Query: 137 TFPFALKACAYLFAFSQGKQ-AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           TF   L AC++     +G    H+     GL  + + +  ++  Y   G LD A  V  +
Sbjct: 371 TFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430

Query: 196 M-LERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           M  + +   W  +++A    G+ +   ++ +R+
Sbjct: 431 MPFKPNSAIWGALLNACRIHGDTELGEQVGKRL 463


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/581 (41%), Positives = 362/581 (62%), Gaps = 14/581 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           +L   +  +++S+ +QIHA  ++           + + +IH +A+  +++ A RVF ++ 
Sbjct: 130 ILKVCSRLQALSEGEQIHALIMKCGFGSHG---FVKNTLIHMYANCGEVEVARRVFDEMS 186

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             N  TWN++     +S + + + + LF  M+E  ++  D+ T    L AC  L     G
Sbjct: 187 ERNVRTWNSMFAGYTKSGNWE-EVVKLFHEMLEL-DIRFDEVTLVSVLTACGRLADLELG 244

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  + ++ ++GL  +  +  SL+  YA CG +D A ++FD M  R +V+W+ MI  + Q 
Sbjct: 245 EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQA 304

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
                AL LF  MQ    +P+  T  SI S+CA L  L  G W H +I +     +   V
Sbjct: 305 SRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKK---RMKLTV 361

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            +  +L+D Y KCGS++ + +VF  MP +++ SW  +I G A +G+ + AL+YF  L++E
Sbjct: 362 TLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYF-YLMLE 420

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           ++  PN +TF+GVLSAC+H G+V EGRD F  M  ++ I P +EHYGC+VD+L RAG I+
Sbjct: 421 KNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIE 480

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA   + NMP++P+AVIWR+LL A CK H +V + EE  KQ+I  E    SG Y+LLS +
Sbjct: 481 EAFQFIKNMPIQPNAVIWRTLL-ASCKVHKNVEIGEESLKQLIILEP-THSGDYILLSNI 538

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YAS  RW D   VR  M +KG+ K PGCS IE+DG+ HEFFA D  H Q+++IY  ++ +
Sbjct: 539 YASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDM 598

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
            +++KS GY P+ ++A +  E DD K+SS+  HSE+LAIA G++   PG  IR+ KNLRV
Sbjct: 599 MKQIKSAGYVPNTAEARLDAEEDD-KESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRV 657

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH  TKL+S++FN EI+VRDR RFHHFK+GSCSC DYW
Sbjct: 658 CTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 217/383 (56%), Gaps = 17/383 (4%)

Query: 40  LTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           L +CK++  L +IHA  ++T L   P+  + LL  + I+   S   +DYA  +F QI+ P
Sbjct: 31  LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTS---MDYAVSIFRQIDEP 87

Query: 97  NSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           +S  +N +IR    ++   P +AI+LF+ M E  +V PD+ TFP  LK C+ L A S+G+
Sbjct: 88  DSPAYNIMIRGF--TLKQSPHEAILLFKEMHEN-SVQPDEFTFPCILKVCSRLQALSEGE 144

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HA I K G  S  ++ N+LIH YA+CG +++A +VFD M ER++ +WN M   + + G
Sbjct: 145 QIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG 204

Query: 216 EFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            ++  +KLF  M ++    D  T  S+ +AC  LA L LG W + Y+    +  L  +  
Sbjct: 205 NWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVE---EKGLKGNPT 261

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +  SL+DMY KCG +D AR++F+ M +RD+ +W+++I G++   R   AL  F  +  + 
Sbjct: 262 LITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEM-QKA 320

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           +  PN IT V +LS+C   G +  G+ +    I +  +   +     L+D  A+ G+++ 
Sbjct: 321 NIDPNEITMVSILSSCAVLGALETGK-WVHFFIKKKRMKLTVTLGTALMDFYAKCGSVES 379

Query: 395 ALHLVSNMPMKPDAVIWRSLLDA 417
           ++ +   MP+K + + W  L+  
Sbjct: 380 SIEVFGKMPVK-NVLSWTVLIQG 401


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/589 (42%), Positives = 352/589 (59%), Gaps = 38/589 (6%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           S   H   L  L  C +M++LKQ H+Q +R  L   +  +    R+I F + +   Y   
Sbjct: 16  SAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAM---GRVIKFCAISKSGY--- 69

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
                       W  L R C          I ++ RM+ + +V P+K T+P  ++AC   
Sbjct: 70  ----------LRWQ-LARNC----------IFMYSRMLHK-SVSPNKFTYPPLIRACCID 107

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNV 206
           +A  +GKQ HAH+ K G  +D +  N+LIH Y +   L+ A +VFDNM   +R+ VSWN 
Sbjct: 108 YAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNA 167

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI A+VQ      A  LF RM++     D +   S+ SAC GL  L  G W H YI +  
Sbjct: 168 MIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS- 226

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              +  D  +  ++IDMYCKCG L+ A +VF  +P++ ++SWN +I G A+HG+ EAA++
Sbjct: 227 --GIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIE 284

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  +   E  +P+ ITFV VLSAC H G+V EG+ YF  M     + P +EH+GC+VDL
Sbjct: 285 LFKEME-REMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDL 343

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG ++EA  L++ MP+ PDA +  +L+ AC + H +  L E++ K+VIE E    SG
Sbjct: 344 LGRAGLLEEARKLINEMPVNPDAGVLGALVGAC-RIHGNTELGEQIGKKVIELEPH-NSG 401

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            YVLL+ +YASA RW DV  VRKLM D+GV K PG S IE +    EF AG  +HPQ K+
Sbjct: 402 RYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKE 461

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           IY  LD I E ++S GY PD +   + D  ++ K++ L  HSE+LAIA G+L  KPG  +
Sbjct: 462 IYAKLDEILETIRSIGYVPD-TDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETL 520

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+ KNLR+C+DCH+ +KLIS++++ EII+RDR RFHHF+ G CSC DYW
Sbjct: 521 RISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/527 (45%), Positives = 334/527 (63%), Gaps = 17/527 (3%)

Query: 97  NSFTWNTLIRA--CARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
            SF WNTLIRA   AR+    P    I +F RM   G V PD HTFPF L++ A      
Sbjct: 23  ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHG-VQPDFHTFPFLLQSFASPSLLH 81

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+  HA I + GL  D ++  SLI  Y+S G +D+A  +F  M ER+++SW+ MI+ +V
Sbjct: 82  LGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYV 141

Query: 213 QFGEFDSALKLFRRMQIL----FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           + G++  AL LFR MQ+L      P+ +T   + +AC  L  L  G WAHAYI + C   
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDK-C--G 198

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYF 327
           +  DV++  +LIDMY KCGS++ A  VF ++ P +D+ +W+++I G A+HG AE  +  F
Sbjct: 199 MPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLF 258

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            +++  +   PN++TF+ V  AC H G+VSEG+DY   M  +Y+I P ++HYGC+VDL  
Sbjct: 259 SKMI-NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYG 317

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG I EA ++V +MPM+PD ++W +LL    + H  +   E   K++IE E    SG Y
Sbjct: 318 RAGRIKEAWNVVKSMPMEPDVLVWGALLSGS-RMHGDIETCELALKKLIELEP-TNSGAY 375

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS VYA   RW DV  VR LM   G+ K PGCS IE+ G+ HEFF GD SHP+T+QI+
Sbjct: 376 VLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIH 435

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L+ I E+LK  GY  + ++  ++D  ++GK+ +L LHSE+LA+A G L   PG PIR+
Sbjct: 436 MMLEEILERLKVEGYVGN-TKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRI 494

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLR+C+DCH   K+IS++F+ EIIVRD  RFHHF  G CSC DYW
Sbjct: 495 VKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/590 (41%), Positives = 357/590 (60%), Gaps = 31/590 (5%)

Query: 41  TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRI------IHFASFADLDYAFRVFYQIE 94
           + C ++S+L QIHA  L+T L      L  ++        IH+A+     + F   +   
Sbjct: 26  SHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYAT----SFLFPPSHTTS 81

Query: 95  NP----NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            P    ++F +NTLIRA +++ D+K  + + ++ M+  G V P+K TFPF LK CA + +
Sbjct: 82  TPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYG-VTPNKFTFPFVLKGCAGIGS 140

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH--LDLANKVFDNMLERSLVSWNVMI 208
              GK  H  + K G   DV++ N+LIH Y   G    + A KVFD+  +   V+W+ MI
Sbjct: 141 LRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMI 200

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             FV+ G    A+ LFR MQ++   PD  T  S+ SACA L  L LG W  +Y+ +    
Sbjct: 201 AGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKK--- 257

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           ++   V + N+LIDM+ KCG++D A ++F  M  R + SW S+I G A+HGR   A+  F
Sbjct: 258 NIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLF 317

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           D +V E   +P+ + F+GVLSAC+H G+V +GR YF  M   ++I P +EHYGC+VDLL 
Sbjct: 318 DEMV-ENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLC 376

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS--VVLSEEVAKQVIESEGGICSG 445
           R G + EA   V  MP +P+ +IWR+++ AC   HA+  + L E ++K++I+SE  +   
Sbjct: 377 RGGFVKEAFEFVQKMPFEPNQIIWRTIITAC---HATGELKLGESISKELIKSEP-MHES 432

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            YVLLS +YA  R+W     VR++M  +G+ K PG + IE++   +EF AGD SH Q K+
Sbjct: 433 NYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKE 492

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           IY  +D +  ++K  GY P  SQ  + +DE D  K+ +L  HSE+LAIA  +LN  PG  
Sbjct: 493 IYEMVDEMGREIKKAGYVPTTSQVLLDIDEED--KEDALYRHSEKLAIAFALLNTPPGTS 550

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IR+ KNLRVC+DCH  TK IS+++N EI+VRDR RFHHFK+G CSC D+W
Sbjct: 551 IRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/651 (39%), Positives = 374/651 (57%), Gaps = 67/651 (10%)

Query: 19  SIFNNNRNEGSFNNHSSLLSS--LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +I+N NR   +F+    L+ S   T CK+   LKQ+HA  ++T    Q +  L  + +I 
Sbjct: 4   TIYNPNRTL-NFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTG---QIQDPLTAAEVIK 59

Query: 77  FASFA--DLDYAFRVFYQIENPNSFTWNTLIRACARSVDA--KPQAIVLFQRMIEQGNVL 132
           F +F+  D+DYA  VF Q+  PN F WNT++R  A + D   + +A++LF  M+  G V 
Sbjct: 60  FCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVK 119

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC--------- 183
           P++ TFP  LKACA      +GKQ H  I K G   D ++ ++L+  Y  C         
Sbjct: 120 PNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179

Query: 184 --------------------------------------GHLDLANKVFDNMLERSLVSWN 205
                                                 G +  A  +FD M  RS+VSWN
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWN 239

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           VMI  + Q G F  A+ LF+ MQ    +P+  T  S+  A A +  L LG W H Y  ++
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               +  D ++ ++L+DMY KCGS+D A QVFE++PKR+  +W++II  FA+HGRAE A+
Sbjct: 300 ---KVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAI 356

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
            +F  L+ +   +PN + ++G+LSAC+H G+V EGR +F  M+    + P +EHYGC+VD
Sbjct: 357 IHF-HLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVD 415

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL RAG+++EA  L+ NMP++PD VIW++LL A CK H ++ + E VA+ ++E      S
Sbjct: 416 LLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA-CKMHKNLKMGERVAETLMELAPHD-S 473

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YV LS +YAS   W  V  VR  M    + K+PGCS IEI GI HEF   D SH + K
Sbjct: 474 GSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAK 533

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           +I   L  +  KL+S GY P+  +  +  DE +  +  +L+ HSE++A+A G+++  P  
Sbjct: 534 EIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERAR--ALQYHSEKIAVAFGLISTAPQH 591

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P+++ KNLR+C+DCH   KLIS I+  +IIVRDR RFH F+ GSCSCMDYW
Sbjct: 592 PLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 373/616 (60%), Gaps = 16/616 (2%)

Query: 4   AIVQGGPPTPQTHSH-SIFNNNRNEGSFNNHSSLLSSLTECK---SMSQLKQIHAQALRT 59
           AI+ G     Q +   ++F+  +  G   N S+L+S +  C    ++ Q KQIH  A+R+
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250

Query: 60  ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
            +  +   L++   +  +A   +++ A ++F ++   +  +WN +I   + +     +A+
Sbjct: 251 GI--ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLN-SQHHEAL 307

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             F RM  +G + P+  T    L ACA+LFA  QG+Q H +  + G  S+  + N+L++ 
Sbjct: 308 AFFNRMQVRG-IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNM 366

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
           YA CG+++ A K+F+ M ++++V+WN +I  + Q G    AL LF  MQ    +PD +  
Sbjct: 367 YAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAI 426

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+  ACA    L  G   H Y +R       ++V+V   L+D+Y KCG+++ A+++FE 
Sbjct: 427 VSVLPACAHFLALEQGKQIHGYTIRS---GFESNVVVGTGLVDIYAKCGNVNTAQKLFER 483

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           MP++D+ SW ++IL + +HG  E AL  F ++  E     + I F  +L+AC+H G+V +
Sbjct: 484 MPEQDVVSWTTMILAYGIHGHGEDALALFSKMQ-ETGTKLDHIAFTAILTACSHAGLVDQ 542

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G  YF  M ++Y + P LEHY CLVDLL RAG++DEA  ++ NM ++PDA +W +LL AC
Sbjct: 543 GLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGAC 602

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
            + H ++ L E+ AK + E +    +G YVLLS +YA A+RW DV  +RK+M +KGV K+
Sbjct: 603 -RIHCNIELGEQAAKHLFELDPD-NAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQ 660

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
           PGCS + +      F  GD +HPQ++QIY  L+++ E+++  GY P+ +  A+ D  ++ 
Sbjct: 661 PGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPN-TNLALQDVEEEA 719

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K++ L  HSE+LAI+ GI+N  PG+PIR+ KNLRVC DCH  TK IS+I   EIIVRD  
Sbjct: 720 KENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDAN 779

Query: 599 RFHHFKDGSCSCMDYW 614
           RFHH K+G CSC DYW
Sbjct: 780 RFHHVKNGFCSCGDYW 795



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 176/331 (53%), Gaps = 19/331 (5%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+ L+ +M   G + PDK  F   +KAC        G++ H  I  RG  SDV +  +L
Sbjct: 103 KALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTAL 161

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDG 235
              Y  CG L+ A +VFD M +R +VSWN +I  + Q G+   AL LF  MQ+   +P+ 
Sbjct: 162 ASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNS 221

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            T  S+   CA L  L  G   H Y +R     + +DVLV N L++MY KCG+++ A ++
Sbjct: 222 STLVSVMPVCAHLLALEQGKQIHCYAIR---SGIESDVLVVNGLVNMYAKCGNVNTAHKL 278

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           FE MP RD+ SWN+II G++L+ +   AL +F+R+ V     PNSIT V VL AC H   
Sbjct: 279 FERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV-RGIKPNSITMVSVLPACAHLFA 337

Query: 356 VSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           + +G+      I+ Y I    E        LV++ A+ GN++ A  L   MP K + V W
Sbjct: 338 LEQGQQ-----IHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAW 391

Query: 412 RSLLDACCK---KHASVVLSEEVAKQVIESE 439
            +++    +    H ++ L  E+  Q I+ +
Sbjct: 392 NAIISGYSQHGHPHEALALFIEMQAQGIKPD 422



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%)

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGM 255
           +  + V W   I  +V+ G ++ AL+L+ +MQ     PD   F S+  AC   + L  G 
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H  I+        +DV+V  +L  MY KCGSL+ ARQVF+ MPKRD+ SWN+II G++
Sbjct: 141 KVHEDIIA---RGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYS 197

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G+   AL  F  + V     PNS T V V+  C H   + +G+      I     + V
Sbjct: 198 QNGQPYEALALFSEMQV-NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDV 256

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L   G LV++ A+ GN++ A  L   MP++ D   W +++
Sbjct: 257 LVVNG-LVNMYAKCGNVNTAHKLFERMPIR-DVASWNAII 294


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/593 (43%), Positives = 355/593 (59%), Gaps = 26/593 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF------ADLDYAFRV 89
           LL+ L  C S+  L Q+HA A++     Q     + +R++   +       A L YA +V
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFV-TRLLTLCTEQGAEAPAHLAYARQV 89

Query: 90  FYQIENPNSFTW-NTLIRACARSVDA---KPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           F +I +P    W NTL+R  AR         +A  +F RM+E+G V PD +TF   LKAC
Sbjct: 90  FDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEG-VAPDTYTFVSLLKAC 148

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A  +G+QAH    K G     Y+  +LI+ YA CG +  A  +FD M    +VS+N
Sbjct: 149 ASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYN 208

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI A V+      AL LFR MQ    +P   T  S+ SACA L  L LG W H YI + 
Sbjct: 209 AMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKM 268

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              SLV    VN +LIDMY KCGSL+ A  VF+ M  RD  +W+ +++ +A HG    A+
Sbjct: 269 RLDSLVK---VNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAI 325

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F+ +  ++   P+ +TF+GVL AC+H GMVSEG  YFD M  EY I   ++HYGC+ D
Sbjct: 326 SMFEEMK-KQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTD 383

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE---SEGG 441
           LLAR+G ++ A   +  +P+KP A++WR+LL AC   H  V + + V ++++E   S GG
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG-HGDVDMGKRVFERILELDDSHGG 442

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
                YV+ S + A+  RW ++ +VRKLM++KGV K PGCSSIEID + HEFFAGD SHP
Sbjct: 443 D----YVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHP 498

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
            +++    +D + E+LK  GY P+ S    V+  ++ K +SLR HSE+LAI+ G+LN  P
Sbjct: 499 HSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP 558

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  +R+ KNLRVC DCH + KL+S +FN  II+RD  RFHHF+DG CSC DYW
Sbjct: 559 GTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/604 (40%), Positives = 356/604 (58%), Gaps = 44/604 (7%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           M QLKQI AQ ++TA+  + K    +  +       DL YA RVF  I +PN+F WN +I
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           RA + S D    A + +Q+M+   +V  + +TFPF L+AC  L A  +  Q H  + K G
Sbjct: 61  RAYSNS-DEPELAFLSYQQMLSS-SVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLG 118

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
             SDV+  N+L+H YA CG +  A ++FDN+ ER  VSWN+MID +++ G+  +A  +F 
Sbjct: 119 FGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFL 178

Query: 226 RMQIL--------------------------------FEPDGYTFQSITSACAGLATLSL 253
            M +                                 FE DG    S+ +ACA L  L  
Sbjct: 179 DMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQ 238

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSII 311
           G W H Y+L   ++ +  D ++  +L++MY KCG ++ A  VF  +   ++D+  W ++I
Sbjct: 239 GRWLHFYVL---NNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMI 295

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GFA+HGR   AL++F+R+   E   PNSITF  VL AC++ G+V EG++ F  M   YN
Sbjct: 296 DGFAIHGRGVEALEWFNRM-RREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYN 354

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           + P +EHYGC+VDLL R+G +DEA  L+  MPMKP AVIW +LL AC   H   +L  +V
Sbjct: 355 VNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACW-IHRDFLLGSQV 413

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
              ++E +    SG Y+ L+ + A+  +W +   VR  M   GV   PG SS+ ++GI H
Sbjct: 414 GAHLVEVDSD-HSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVH 472

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKS-RGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           EF AG   HPQ +QI   L  I E+L+   GY P  ++  ++D  ++ K++++  HSE+L
Sbjct: 473 EFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPA-TKDLLLDLENEEKETAMAQHSEKL 531

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G++N KPG  IRV KNLR+C+DCH V KL+S+I++ EII+RDR RFHHF+DGSCSC
Sbjct: 532 AIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSC 591

Query: 611 MDYW 614
            DYW
Sbjct: 592 KDYW 595


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/584 (41%), Positives = 358/584 (61%), Gaps = 16/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +   +   +++  ++        H+ ++ Y+ +I  +AS   ++ A ++F 
Sbjct: 172 HTSLISVYVQNGRLEDARKVFDRS-------PHRDVVSYTALIKGYASRGYIESAQKLFD 224

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I   A + + K +A+ LF+ M++  N+ PD+ T    + ACA   + 
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYK-EALELFKEMMKT-NIRPDESTMVTVVSACAQSGSI 282

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I NSL+  Y+ CG L+ A  +F+ +L + ++SWN +I  +
Sbjct: 283 ELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGY 342

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +    +  
Sbjct: 343 THMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATN 402

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
              L   SLIDMY KCG ++ A QVF S+  + L+SWN++I GFA+HGRA+AA   F R+
Sbjct: 403 ASSL-RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRM 461

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ ITFVG+LSAC+  GM+  GR  F  M  +Y ITP LEHYGC++DLL  +G
Sbjct: 462 R-KIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSG 520

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  +++NM M+PD VIW SLL AC K   +V L E  A+ +I+ E     G YVLL
Sbjct: 521 LFKEAEEMINNMEMEPDGVIWCSLLKAC-KIRGNVELGESFAQNLIKIEPE-NPGCYVLL 578

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V  +R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 579 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 697

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CHE TKLIS+I+  EII RDR RFHHF+DG CSC DYW
Sbjct: 698 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 215/425 (50%), Gaps = 50/425 (11%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLD 84
           S  NH SL S L  CK++  L+ IHAQ ++T L   H T    S+++        F  L 
Sbjct: 30  SLRNHPSL-SLLHNCKTLQSLRLIHAQMIKTGL---HNTNYALSKLLELCVISPHFDGLP 85

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           YA  VF  I+ PN   WNT+ R  A S D    A+ L+  MI  G +LP+ +TFPF LK+
Sbjct: 86  YAISVFETIQEPNLLIWNTMFRGHALSSDPV-SALKLYVCMISLG-LLPNSYTFPFLLKS 143

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF------------------------- 179
           CA   AF +G+Q H H+ K G   D++++ SLI                           
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSY 203

Query: 180 ------YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFE 232
                 YAS G+++ A K+FD +  + +VSWN MI  + + G +  AL+LF+  M+    
Sbjct: 204 TALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIR 263

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           PD  T  ++ SACA   ++ LG   H++I    DH   +++ + NSL+D+Y KCG L+ A
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHSWI---DDHGFGSNLKIVNSLMDLYSKCGELETA 320

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
             +FE +  +D+ SWN++I G+      + AL  F  + +     PN +T + +L AC H
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGERPNDVTMLSILPACAH 379

Query: 353 RGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
            G +  GR +  V I++   + T        L+D+ A+ G+I EA H V N  +      
Sbjct: 380 LGAIDIGR-WIHVYIDKRLKSATNASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSS 437

Query: 411 WRSLL 415
           W +++
Sbjct: 438 WNAMI 442


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/608 (42%), Positives = 358/608 (58%), Gaps = 48/608 (7%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF---ASFADLDYAFRVFYQIENPNSF 99
           C +   LK IHA  LRT L      +   SR+I F   ++   L YA RV  QI+NPN F
Sbjct: 27  CSNARDLKIIHAHMLRTHL---FFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLF 83

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +N LIR C+ S +  P+    +     +  +LPD  T PF +KACA L     G Q H 
Sbjct: 84  IYNALIRGCSTSEN--PENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHG 141

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
              K G   D Y+ NSL+H YAS G ++ A  VF  M    +VSW  MI  + + G+  S
Sbjct: 142 QAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKS 201

Query: 220 ALKLFRRM-----------------QILFEPDGYTFQS---------------ITSACAG 247
           A +LF RM                    FE    TF++               + S+CA 
Sbjct: 202 ARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAH 261

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L++G  AH Y++R+    L  ++++  +++DMY +CG+++ A  VFE +P++D+  W
Sbjct: 262 LGALAMGEKAHEYVMRN---KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCW 318

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            ++I G A+HG AE AL YF  +  ++ F P  ITF  VL+AC+H GMV  G + F+ M 
Sbjct: 319 TALIAGLAMHGYAEKALWYFSEMA-KKGFVPRDITFTAVLTACSHAGMVERGLEIFESMK 377

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            ++ + P LEHYGC+VDLL RAG + +A   V  MP+KP+A IWR+LL AC + H +V +
Sbjct: 378 RDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGAC-RIHKNVEV 436

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
            E V K ++E +    SG YVLLS +YA A +W DV ++R++M DKGV K PG S IEID
Sbjct: 437 GERVGKILLEMQPEY-SGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEID 495

Query: 488 GIAHEFFAGDTSHPQTKQIYGFL-DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           G  HEF  GD +HP+ ++I     D+I  K+K  GY  + ++  M D  ++ K+ +L  H
Sbjct: 496 GKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAET-MFDIDEEEKEGALHRH 554

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LAIA GI+ ++   PIR+ KNLRVC+DCH  TKLIS++F VE+IVRDR RFHHFK+G
Sbjct: 555 SEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEG 614

Query: 607 SCSCMDYW 614
           +CSCMDYW
Sbjct: 615 TCSCMDYW 622


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/586 (42%), Positives = 360/586 (61%), Gaps = 17/586 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS----FADLDYAFRV 89
           SS+LS + +C S+ +LKQI A  ++T   Q + T+L  +++I+F +     A +D+A R+
Sbjct: 36  SSILSLIPKCTSLRELKQIQAYTIKTH--QNNPTVL--TKLINFCTSNPTIASMDHAHRM 91

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F +I  P+   +NT+ R  AR  D   +AI+L  +++  G +LPD +TF   LKACA L 
Sbjct: 92  FDKIPQPDIVLFNTMARGYAR-FDDPLRAILLCSQVLCSG-LLPDDYTFSSLLKACARLK 149

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A  +GKQ H    K G+  ++Y+  +LI+ Y +C  +D A +VFD + E  +V++N +I 
Sbjct: 150 ALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIIT 209

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           +  +    + AL LFR +Q    +P   T     S+CA L  L LG W H Y+ ++    
Sbjct: 210 SCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN---G 266

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
               V VN +LIDMY KCGSLD A  VF+ MP+RD  +W+++I+ +A HG    A+    
Sbjct: 267 FDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISML- 325

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R + +    P+ ITF+G+L AC+H G+V EG +YF  M +EY I P ++HYGC++DLL R
Sbjct: 326 REMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGR 385

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG ++EA   +  +P+KP  ++WR+LL +C   H +V +++ V +++ E +     G YV
Sbjct: 386 AGRLEEACKFIDELPIKPTPILWRTLLSSC-SSHGNVEMAKLVIQRIFELDDSH-GGDYV 443

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           +LS + A   RW+DV  +RK+M DKG  K PGCSSIE++ + HEFF+GD  H  +  ++ 
Sbjct: 444 ILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHH 503

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD + ++LK  GY PD S     D  D+ K+  LR HSE+LAI  G+LN  PG  IRV 
Sbjct: 504 ALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVV 563

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH   K IS IF  +II+RD  RFHHFKDG CSC DYW
Sbjct: 564 KNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/632 (39%), Positives = 359/632 (56%), Gaps = 72/632 (11%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S+  L Q+H   LR+   Q H       +      F++ D+A +VF  I NPN F WN +
Sbjct: 45  SLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I+ C  + +   +AI  + RM+   +  P+K T+P   KAC+   A  +G+Q H H+ K 
Sbjct: 105 IKGCLEN-NKLFKAIYFYGRMVI--DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 165 GL------------------------------VSDVYINNSLIHFYASCGHLDLAN---- 190
           G+                               SDV   N++I  Y  CG L+ A     
Sbjct: 162 GIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 191 ---------------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
                                      K+FD M ER  +SW+ M+D ++  G +  AL++
Sbjct: 222 QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEI 281

Query: 224 FRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           F++MQ     P  +   S+ +AC+ +  +  G W HAY+ R+   S+  D ++  +L+DM
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN---SIKLDAVLGTALLDM 338

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y KCG LD+  +VFE M +R++ +WN++I G A+HGRAE AL+ F +L  E    PN IT
Sbjct: 339 YAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ-EGRMKPNGIT 397

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            VGVL+AC H G V +G   F  M   Y + P LEHYGC+VDLL R+G   EA  L+++M
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
           PMKP+A +W +LL AC + H +  L+E V K ++E E    SG YVLLS +YA   R++D
Sbjct: 458 PMKPNAAVWGALLGAC-RIHGNFDLAERVGKILLELEPQ-NSGRYVLLSNIYAKVGRFDD 515

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           V  +RKLM D+G+   PG S ++++G  HEF  GD SHPQ K+IY  L +I E+L+  G+
Sbjct: 516 VSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
           +PD SQ  + D  ++ K++++  HSE+LAIA G++N  PG  I + KNLRVC DCH  TK
Sbjct: 576 SPDTSQV-LFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATK 634

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LIS+IF+ EIIVRDR R+HHFK+G+CSC D+W
Sbjct: 635 LISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/620 (39%), Positives = 378/620 (60%), Gaps = 47/620 (7%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           +++S L+S +  CKSM Q+KQ HAQ + TAL     +    ++++  A+ A L YA ++F
Sbjct: 14  DHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSA---NKLLKLAACASLSYAHKLF 70

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            QI  P+ F +NT+I+A + S  +   ++++F+ + +   + P++++F FA  AC     
Sbjct: 71  DQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLG 130

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYA----------------------------- 181
             +G+Q   H  K GL ++V++ N+LI  Y                              
Sbjct: 131 VQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAA 190

Query: 182 --SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
               G++ LA ++FD M ER +VSW+ +I  +VQ G F  AL  F +M QI  +P+ YT 
Sbjct: 191 YVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTL 250

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF-E 297
            S  +AC+ L  L  G W HAYI +     +  +  +  S+IDMY KCG ++ A +VF E
Sbjct: 251 VSALAACSNLVALDQGKWIHAYIGKG---EIKMNERLLASIIDMYAKCGEIESASRVFFE 307

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
              K+ +  WN++I GFA+HG    A+  F+++ VE+  SPN +TF+ +L+AC+H  MV 
Sbjct: 308 HKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEK-ISPNKVTFIALLNACSHGYMVE 366

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           EG+ YF +M+++Y ITP +EHYGC+VDLL+R+G + EA  ++S+MPM PD  IW +LL+A
Sbjct: 367 EGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNA 426

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR-KLMTDKGVT 476
           C + +  +     + + +I+       G +VLLS +Y+++ RWN+  ++R K    +   
Sbjct: 427 C-RIYKDMERGYRIGR-IIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRK 484

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PGCSSIE+ G  H+F  GD SHPQ+++IY FLD +  KLKS GY P+  +  ++ ++D
Sbjct: 485 KIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGE--LLHDID 542

Query: 537 D--GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
           D   K+++L +HSE+LAIA G++N   G PIR+ KNLRVC DCH+ TK IS+++N  IIV
Sbjct: 543 DEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIV 602

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RDR R+HHF+DG CSC DYW
Sbjct: 603 RDRTRYHHFEDGICSCKDYW 622


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 370/621 (59%), Gaps = 47/621 (7%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD---LDY 85
           S +N +  L  L  C +M +L+QIH Q L+T L       +  S+++ F +  +   L Y
Sbjct: 14  SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDE---IPASKLLAFCASPNSGSLAY 70

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF +I  PN+F WNT+IR  + S + + +A++L+  M+   +V  + +TFPF LKAC
Sbjct: 71  ARTVFDRIFRPNTFMWNTMIRGYSNSKEPE-EALLLYHHMLYH-SVPHNAYTFPFLLKAC 128

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----------------------- 182
           + + A  + +Q HAHI K G  S++Y  NSL++ Y+                        
Sbjct: 129 SSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWN 188

Query: 183 --------CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEP 233
                   CG +++A ++F++M ER+++SW  MI   V  G+   AL LF RMQ    + 
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D     S   ACA L  L  G W HAYI +H    +  D ++   LIDMY KCG L+ A 
Sbjct: 249 DNVALVSTLQACADLGVLDQGKWIHAYIKKH---EIEIDPILGCVLIDMYAKCGDLEEAI 305

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           +VF  M ++ ++ W ++I G+A+HGR   AL++F ++       PN +TF G+L+AC+H 
Sbjct: 306 EVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA-GVEPNQMTFTGILTACSHA 364

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V E +  F+ M   +   P +EHYGC+VDLL RAG + EA  L+ NMP+KP+A IW +
Sbjct: 365 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 424

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL+AC   H ++ L +++ K +I+ + G   G Y+ L+ ++A+A  WN    VR+ M ++
Sbjct: 425 LLNAC-HIHGNLELGKQIGKILIQVDPG-HGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 482

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           GV+K PGCS I ++G AHEF AGD SHPQ K+I   L+ I E+L+  GY P      +  
Sbjct: 483 GVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDL 542

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
           E  + K++++  HSE+LA+  G+++ KPGM IR+ KNLRVC+DCH V KLIS+++  EI+
Sbjct: 543 EDKE-KETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREIL 601

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           +RDR RFH FKDG+C+C DYW
Sbjct: 602 MRDRTRFHLFKDGNCTCGDYW 622


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/632 (39%), Positives = 360/632 (56%), Gaps = 72/632 (11%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S+  L Q+HA  LR+   Q H       +      F++ D+A +VF  I NPN F WN +
Sbjct: 45  SLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I+ C  + +   +AI  + RM+   +  P+K T+P   KAC+   A  +G+Q H H+ K 
Sbjct: 105 IKGCLEN-NKLFKAIYFYGRMVI--DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 165 GL------------------------------VSDVYINNSLIHFYASCGHLDLAN---- 190
           G+                               SDV   N++I  Y  CG L+ A     
Sbjct: 162 GIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 191 ---------------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
                                      K+FD M ER  +SW+ M+D ++  G +  AL++
Sbjct: 222 QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEI 281

Query: 224 FRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           F++MQ     P  +   S+ +AC+ +  +  G W HAY+ R+   S+  D ++  +L+DM
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN---SIKLDAVLGTALLDM 338

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y KCG LD+  +VFE M +R++ +WN++I G A+HGRAE AL+ F +L  E    PN IT
Sbjct: 339 YAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ-EGRMKPNGIT 397

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            VGVL+AC H G V +G   F  M   Y + P LEHYGC+VDLL R+G   EA  L+++M
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
           PMKP+A +W +LL AC + H +  L+E V K ++E E    SG YVLLS +YA   R++D
Sbjct: 458 PMKPNAAVWGALLGAC-RIHGNFDLAERVGKILLELEPQ-NSGRYVLLSNIYAKVGRFDD 515

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           V  +RKLM ++G+   PG S ++++G  HEF  GD SHPQ K+IY  L +I E+L+  G+
Sbjct: 516 VSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
           +PD SQ  + D  ++ K++++  HSE+LAIA G++N  PG  I + KNLRVC DCH  TK
Sbjct: 576 SPDTSQV-LFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATK 634

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LIS+IF+ EIIVRDR R+HHFK+G+CSC D+W
Sbjct: 635 LISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/623 (40%), Positives = 376/623 (60%), Gaps = 55/623 (8%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQ 92
           L   ++ CK+   LKQIHA  ++T   Q H  L   + ++ F + +   ++ YA + F Q
Sbjct: 18  LFPQISRCKTTRHLKQIHAHFIKTG--QIHHPLAA-AELLKFLTLSTQREIKYARKFFSQ 74

Query: 93  IENPNSFTWNTLIRACARSVDA------KPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
           I +PN F+WNT+IRA A S D         +A++ F  M+  G V P+K TFP  LKACA
Sbjct: 75  IHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACA 134

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN---------------- 190
            L    +GKQ H  + K GLVSD ++ ++L+  Y  CG +  A+                
Sbjct: 135 KLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWN 194

Query: 191 ----------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
                           ++FD+M  +S+VSWNVMI    Q G F  A+++F  MQ+   P 
Sbjct: 195 VMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPP 254

Query: 235 GY-TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
            Y T  S+  A + L  + LG W H +  +   + +  D ++ ++LIDMY KCGS+D A 
Sbjct: 255 NYVTLVSVLPAVSRLGAIELGKWVHLFAEK---NEIEIDDVLGSALIDMYSKCGSIDKAV 311

Query: 294 QVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
           QVFE +  K++  +W++II G A+HGRA  AL +F R+  +   +P+ + ++GVLSAC+H
Sbjct: 312 QVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRM-QQAGVTPSDVVYIGVLSACSH 370

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
            G+V EGR  +  M+N   + P +EHYGC+VDLL RAG ++EA  L+ NMP+KPD VI +
Sbjct: 371 AGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILK 430

Query: 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472
           +LL A CK H ++ + E +AK ++       SG YV LS ++AS   W  V  VR  M +
Sbjct: 431 ALLGA-CKMHGNIEMGERIAK-ILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKE 488

Query: 473 KGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM- 531
             + K+PGCS IE+DG+ HEF   D SHP+ + I+  L+ + ++L+S GY P+ +Q  + 
Sbjct: 489 LDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLN 548

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
           +DE +  KQS+L  HSE++AIA G+++ +P  P+++ KNLRVC+DCH   KL+S+I+N +
Sbjct: 549 MDEKE--KQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRK 606

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           IIVRDR RFHHF++GSCSCMDYW
Sbjct: 607 IIVRDRKRFHHFENGSCSCMDYW 629


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 370/621 (59%), Gaps = 47/621 (7%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD---LDY 85
           S +N +  L  L  C +M +L+QIH Q L+T L       +  S+++ F +  +   L Y
Sbjct: 14  SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDE---IPASKLLAFCASPNSGSLAY 70

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF +I  PN+F WNT+IR  + S + + +A++L+  M+   +V  + +TFPF LKAC
Sbjct: 71  ARTVFDRIFRPNTFMWNTMIRGYSNSKEPE-EALLLYHHMLYH-SVPHNAYTFPFLLKAC 128

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----------------------- 182
           + + A  + +Q HAHI K G  S++Y  NSL++ Y+                        
Sbjct: 129 SSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWN 188

Query: 183 --------CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEP 233
                   CG +++A ++F++M ER+++SW  MI   V  G+   AL LF RMQ    + 
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D     S   ACA L  L  G W HAYI +H    +  D ++   LIDMY KCG L+ A 
Sbjct: 249 DNVALVSTLQACADLGVLDQGKWIHAYIKKH---EIEIDPILGCVLIDMYAKCGDLEEAI 305

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           +VF  M ++ ++ W ++I G+A+HGR   AL++F ++       PN +TF G+L+AC+H 
Sbjct: 306 EVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA-GVEPNQMTFTGILTACSHA 364

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V E +  F+ M   +   P +EHYGC+VDLL RAG + EA  L+ NMP+KP+A IW +
Sbjct: 365 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 424

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL+AC   H ++ L +++ K +I+ + G   G Y+ L+ ++A+A  WN    VR+ M ++
Sbjct: 425 LLNAC-HIHGNLELGKQIGKILIQVDPG-HGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 482

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           GV+K PGCS I ++G AHEF AGD SHPQ K+I   L+ I E+L+  GY P      +  
Sbjct: 483 GVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDL 542

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
           E  + K++++  HSE+LA+  G+++ KPGM IR+ KNLRVC+DCH V KLIS+++  EI+
Sbjct: 543 EDKE-KETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREIL 601

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           +RDR RFH FKDG+C+C DYW
Sbjct: 602 MRDRTRFHLFKDGNCTCGDYW 622



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 12/215 (5%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQAL 57
           M    V  G P     + ++F+  +  G   ++ +L+S+L  C  +  L Q   IHA   
Sbjct: 221 MISGCVGAGKPK---EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIK 277

Query: 58  RTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ 117
           +  +  +   +L    I  +A   DL+ A  VF ++E      W  +I   A     + +
Sbjct: 278 KHEI--EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGR-E 334

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK-RGLVSDVYINNSL 176
           A+  F +M   G V P++ TF   L AC++     + K     + +  G    +     +
Sbjct: 335 ALEWFMKMQTAG-VEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 177 IHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDA 210
           +      G L  A ++ +NM ++ +   W  +++A
Sbjct: 394 VDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNA 428


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/583 (43%), Positives = 359/583 (61%), Gaps = 23/583 (3%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIENPNS 98
           E  S+SQ  Q+HAQ L++  P++    L  + +  FA+ +   DL YA  +   +   NS
Sbjct: 2   EITSLSQAMQLHAQILKSPDPKKQTRNL--TPLFTFAALSPAGDLTYAHLILNSLSTQNS 59

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQ-GNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           F  NT+IRA +++ D   QA+ LF  M+ Q  +  PDK T+PF LK+CA L     GKQ 
Sbjct: 60  FFHNTMIRAYSQTPDPT-QALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQL 118

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  I+K GL SD Y++N LIH Y+SCG    A KVF  M +R +VSW  MID FV     
Sbjct: 119 HGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRA 178

Query: 218 DSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
             A++LF  M +   EP+  T  S+  ACA    + +G      I    +  +  +  V 
Sbjct: 179 LEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIE---ERKIGLEANVR 235

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            +LIDMY KCGS+  AR+VF+ +  +D+ +W ++I G A HG  E A+  FD++   ESF
Sbjct: 236 TALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQM---ESF 292

Query: 337 S--PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+  T   VLSAC + G  SEG  YF+ M  +Y I P ++HYGC+VDLLAR G++DE
Sbjct: 293 GLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDE 352

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESEGGICSGVYVLLSR 452
           A   +  MP++PD V+WR+L+ A  K H  +  SE++ K   +++ +   C G YVLL  
Sbjct: 353 AEEFIRKMPIEPDVVLWRTLIWA-SKVHGDIDRSEQLMKDRGLLKMDSDDC-GSYVLLGN 410

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           VYASA +W+D   +R+LM  KG++K PGCS IE+DG+ HEF AGD+ H + ++IY  LD 
Sbjct: 411 VYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDE 470

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQS-SLRLHSERLAIALGILNLKPGMPIRVFKNL 571
           ++E+LK+ GY P  S+  +  E+D+ +++  LR HSE+LA+A G++   PG  IR+ KNL
Sbjct: 471 VEERLKAEGYHPKLSEVLL--EIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNL 528

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R C+DCH V KLIS+I+  +IIVRDR RFHHF +G CSC DYW
Sbjct: 529 RSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 358/613 (58%), Gaps = 41/613 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQ---HKTLL-IYSR------------------ 73
           LL S  + K+  + +QIHAQ L+         H +L+ +Y+R                  
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 74  -------IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
                  I  +AS  D   A +VF +I   +  +WN +I     +     +A+ LF+ M+
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVEN-GRYEEALELFKEMM 188

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK----RGLVSDVYINNSLIHFYAS 182
            + NV PD+ T    + ACA   +   G+Q H+ +       G  S + I N+LI  Y+ 
Sbjct: 189 -RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSK 247

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSI 241
           CG ++ A  +F+ +  + +VSWN +I  +     +  AL LF+ M    E P+  T  S+
Sbjct: 248 CGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSV 307

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             ACA L  + +G W H YI +     +  +  +  SLIDMY KCG ++ A QVF SM  
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKLK-GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLY 366

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R L+SWN++I GFA+HGRA AA   F R+       P+ ITFVG+LSAC+H G++  GR 
Sbjct: 367 RSLSSWNAMIFGFAMHGRANAAFDLFSRMR-GNRVEPDDITFVGLLSACSHSGLLDLGRQ 425

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            F  M  +YN+TP LEHYGC++DLL  +G   EA  ++  MPM+PD VIW SLL AC KK
Sbjct: 426 IFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKAC-KK 484

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H ++ L+E  A+++I+ E    SG YVLLS +YA+A RW DV  VR ++  KG+ K PGC
Sbjct: 485 HGNLELAESFAQKLIKIEPE-NSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGC 543

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           SSIE+D + HEF  GD  HP+ ++IY  L+ +D +L+  G+ PD S+     E ++ K+ 
Sbjct: 544 SSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEME-EEWKEG 602

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +LR HSE+LAIA G+++ KPG  + + KNLRVC++CHE TKLIS+I+  EI+ RDR RFH
Sbjct: 603 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFH 662

Query: 602 HFKDGSCSCMDYW 614
           HF+DG CSC DYW
Sbjct: 663 HFRDGVCSCCDYW 675



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 189/371 (50%), Gaps = 40/371 (10%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F  L YA  VF  I+ PN   WNT++R  A S D    A+ ++ RM+  G+ LP+ ++FP
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDP-VSALEMYVRMVSLGH-LPNSYSFP 68

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD------------ 187
           F LK+CA   AF +G+Q HA + K G   D Y++ SLI  YA  G L+            
Sbjct: 69  FLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHR 128

Query: 188 -------------------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-M 227
                               A KVFD + ER +VSWN MI  +V+ G ++ AL+LF+  M
Sbjct: 129 DVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM 188

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI-LRHCDHSLVTDVLVNNSLIDMYCKC 286
           +    PD  T  S+ SACA   ++ LG   H+++     DH   + + + N+LID+Y KC
Sbjct: 189 RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G ++ A  +FE +  +D+ SWN++I G+      + AL  F  + +     PN +T + V
Sbjct: 249 GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM-LRSGECPNDVTLLSV 307

Query: 347 LSACNHRGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           L AC H G +  GR +  V I++    +T        L+D+ A+ G+I EA H V N  +
Sbjct: 308 LPACAHLGAIDIGR-WIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDI-EAAHQVFNSML 365

Query: 405 KPDAVIWRSLL 415
                 W +++
Sbjct: 366 YRSLSSWNAMI 376


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/584 (41%), Positives = 355/584 (60%), Gaps = 16/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +   +   +++  ++        H+ ++ Y+ +I  +AS   ++ A ++F 
Sbjct: 141 HTSLISMYVQNGRLEDAQKVXDKS-------SHRDVVSYTALITGYASRGXIESAHKMFD 193

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN  I   A + + K +A+ LF++M++  NV PD+ T    L ACA   + 
Sbjct: 194 EIPVKDVVSWNAXISGYAETGNYK-EALELFKKMMKT-NVRPDESTMVTVLSACAQSGSI 251

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G   ++ I N+LI  Y+ CG L+ A  +F  +  + ++SWN +I  +
Sbjct: 252 ELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGY 311

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI SACA L  + +G W H YI +     + 
Sbjct: 312 THMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLK-GVT 370

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               +  SLIDMY KCG ++ A+QVF+SM  R L+SWN++I GFA+HGRA AA   F R+
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ ITFVG+LSAC+H GM+  GR  F  M  +Y + P LEHYGC++DL   +G
Sbjct: 431 R-KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSG 489

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  +++ M M+PD VIW SLL AC K H +V L E  A+ +I+ E     G YVLL
Sbjct: 490 LFKEAEKMINTMEMEPDGVIWCSLLKAC-KMHGNVELGESYAQNLIKIEPE-NPGSYVLL 547

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V   R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 548 SNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 607

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CHE TKLIS+I+  EII RDR RFHHF+DG CSC DYW
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 210/410 (51%), Gaps = 51/410 (12%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA----SFADLDYAF 87
           NH SL S L  CK++  L+ IHAQ ++T L   H T    S+++        F  L YA 
Sbjct: 2   NHPSL-SLLHXCKTLQSLRIIHAQMIKTGL---HNTNYALSKLLEXCVLSPHFDGLPYAI 57

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I+ P    WNT+ R  A S D    A+ L+  M+  G +LP+ +TFPF LK+CA 
Sbjct: 58  SVFDTIQEPXLLIWNTMFRGHALSSDP-VSALKLYVCMVSLG-LLPNSYTFPFLLKSCAK 115

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF---------------------------- 179
             AF +G+Q H  + K G   D+YI+ SLI                              
Sbjct: 116 SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTAL 175

Query: 180 ---YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDG 235
              YAS G ++ A+K+FD +  + +VSWN  I  + + G +  AL+LF++ M+    PD 
Sbjct: 176 ITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDE 235

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            T  ++ SACA   ++ LG   H++I    DH    ++ + N+LID+Y KCG L+ A  +
Sbjct: 236 STMVTVLSACAQSGSIELGRQVHSWI---NDHGFGXNLKIVNALIDLYSKCGELETACGL 292

Query: 296 FESMPKRDLTSWNSIILGFA-LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           F+ +  +D+ SWN++I G+  ++   EA L + D L   E   PN +T + +LSAC H G
Sbjct: 293 FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE--KPNDVTMLSILSACAHLG 350

Query: 355 MVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            +  GR +  V I++    +T        L+D+ A+ G+I+ A  +  +M
Sbjct: 351 AIDIGR-WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM 399


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/613 (39%), Positives = 357/613 (58%), Gaps = 45/613 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIE 94
           L+ + +E + +   K  H   ++  L      + I + +IHF A   +L   +RVF  I 
Sbjct: 142 LIKAASELEELFTGKAFHGMVIKVLLGSD---VFILNSLIHFYAKCGELGLGYRVFVNIP 198

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WN++I A  +      +A+ LFQ M E  NV P+  T    L ACA    F  G
Sbjct: 199 RRDVVSWNSMITAFVQG-GCPEEALELFQEM-ETQNVKPNGITMVGVLSACAKKSDFEFG 256

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H++I +  +   + ++N+++  Y  CG ++ A ++FD M E+ +VSW  M+  + + 
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316

Query: 215 GEFDSA-------------------------------LKLFRRMQI--LFEPDGYTFQSI 241
           GE+D+A                               L+LF  +Q+    +PD  T  S 
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA L  + LG W H YI +     +  +  +  SLIDMYCKCG L  A  VF S+ +
Sbjct: 377 LSACAQLGAMDLGGWIHVYIKKQ---GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER 433

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           +D+  W+++I G A+HG  + A+  F ++  E+   PN++TF  +L AC+H G+V EGR 
Sbjct: 434 KDVFVWSAMIAGLAMHGHGKDAIALFSKMQ-EDKVKPNAVTFTNILCACSHVGLVEEGRT 492

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +F+ M   Y + P ++HY C+VD+L RAG ++EA+ L+  MPM P A +W +LL AC   
Sbjct: 493 FFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGAC-TI 551

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +VVL+E+   Q+IE E G   G YVLLS +YA A +W+ V  +RKLM D G+ KEPGC
Sbjct: 552 HENVVLAEQACSQLIELEPG-NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGC 610

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           SSIE+DGI HEF  GD SHP  K+IY  LD I  +L++ GY P+ S    + E +D K+ 
Sbjct: 611 SSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQ 670

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +L LHSE+LAIA G+++     PIR+ KNLRVC DCH V KL+S++++ EI++RDR RFH
Sbjct: 671 ALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFH 730

Query: 602 HFKDGSCSCMDYW 614
           HF++G CSCMDYW
Sbjct: 731 HFREGHCSCMDYW 743



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 241/440 (54%), Gaps = 49/440 (11%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKT 67
           PTP  +S ++ NN+R    F NH +L S + +C    QLKQIHAQ LRT L   P     
Sbjct: 18  PTPNPNSITL-NNDR---YFANHPTL-SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASR 72

Query: 68  LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
           L+  + +   + F  LDYA +VF QI +PN +TWNTLIRA A S +   Q++++F RM+ 
Sbjct: 73  LITAAAL---SPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH-QSLLIFLRMLH 128

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           Q    PDK TFPF +KA + L     GK  H  + K  L SDV+I NSLIHFYA CG L 
Sbjct: 129 QSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELG 188

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
           L  +VF N+  R +VSWN MI AFVQ G  + AL+LF+ M+    +P+G T   + SACA
Sbjct: 189 LGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACA 248

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
             +    G W H+YI R   + +   + ++N+++DMY KCGS++ A+++F+ MP++D+ S
Sbjct: 249 KKSDFEFGRWVHSYIER---NRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVS 305

Query: 307 WNSIILGFALHGRAEA-------------------------------ALKYFDRLVVEES 335
           W ++++G+A  G  +A                               AL+ F  L + ++
Sbjct: 306 WTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKT 365

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ +T V  LSAC   G +  G  +  V I +  +         L+D+  + G++ +A
Sbjct: 366 AKPDEVTLVSTLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKA 424

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
           L +  ++  K D  +W +++
Sbjct: 425 LMVFHSVERK-DVFVWSAMI 443



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 35  SLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +L+S+L+ C  +  +     IH    +  +  +    L  S I  +    DL  A  VF+
Sbjct: 372 TLVSTLSACAQLGAMDLGGWIHVYIKKQGM--KLNCHLTTSLIDMYCKCGDLQKALMVFH 429

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +E  + F W+ +I   A     K  AI LF +M ++  V P+  TF   L AC+++   
Sbjct: 430 SVERKDVFVWSAMIAGLAMHGHGK-DAIALFSKM-QEDKVKPNAVTFTNILCACSHVGLV 487

Query: 152 SQGKQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-WNVMID 209
            +G+     +    G++  V     ++      G L+ A ++ + M      S W  ++ 
Sbjct: 488 EEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLG 547

Query: 210 A 210
           A
Sbjct: 548 A 548


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 372/655 (56%), Gaps = 63/655 (9%)

Query: 4   AIVQGGPPTPQTHSHSIFNNNR------------NEGSFNNHSSLLSSLTECKSMSQLKQ 51
           +I     P+P     SIF  NR                F       S + + KS++ L Q
Sbjct: 10  SIFTASHPSPP----SIFTTNRSSVLPSSSSTARTSDRFQEVERFASLIDKSKSVAHLLQ 65

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           IHA  LR  L   H  +L +     +A+   LD +  VF   + PN F+++ +I +  +S
Sbjct: 66  IHASLLRRGL--YHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQS 123

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
                +A   + +M+  G V P+  TF   LK+C+       GK  H    K GL SD+Y
Sbjct: 124 -RLFDRAFGYYSQMLSCG-VEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLY 177

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVS---------------------------- 203
           +   L+  YA  G +  A ++FD M ERSLVS                            
Sbjct: 178 VRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERD 237

Query: 204 ---WNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHA 259
              WNVMI  + Q G  + +LKLFRRM +    P+  T  ++ SAC  L  L  G W H+
Sbjct: 238 VVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHS 297

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           YI    +  +  +V V  +LIDMY KCGSL+ AR VF+ +  +D+ +WNS+I+G+A+HG 
Sbjct: 298 YIE---NKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGF 354

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           ++ AL+ F+ +  E    P  ITF+G+LSAC H G+V EGR +F +M ++Y I P +EHY
Sbjct: 355 SQHALQLFEEMT-ETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHY 413

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
           GC+V+LL RAG+++EA  LV NM +  D V+W +LL  CC+ H ++ L EE+AK +++ +
Sbjct: 414 GCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLL-GCCRLHVNIKLGEEIAKFLVDQK 472

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG YVLLS +YA+   W  V  +R LM + G+ KE GCSSIE+D   HEF AG+  
Sbjct: 473 LA-NSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERK 531

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP++K+IY  L+ I+  LK+RGYTP  +   + D  ++ K+ SL +HSE+LAIA G+++ 
Sbjct: 532 HPKSKEIYVMLNEINSWLKARGYTPQ-TDVVLHDLREEQKEQSLEVHSEKLAIAFGLIST 590

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KPG  +++ KNLRVC DCH V K+IS I   +I++RDR RFHHF+DG CSC DYW
Sbjct: 591 KPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/617 (41%), Positives = 364/617 (58%), Gaps = 57/617 (9%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY--SRIIHFASFADL-DYAFRVFYQI 93
           LS L  C ++S LK IHA  +R      H    ++  S +I  +   +L DYA +VFYQI
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRA-----HTIFDVFAASCLISISINKNLLDYAAQVFYQI 73

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +NPN F +N+ IR  + S D  P     F    ++  ++PD  T+PF +KAC    +   
Sbjct: 74  QNPNLFIYNSFIRGFSGSKD--PDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDM 131

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGH-------------LDL------------ 188
           G QAH  I + G  SDVY+ NSL+  Y++ G              LD+            
Sbjct: 132 GIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIK 191

Query: 189 ------ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY-----T 237
                 A K+FD M E++LV+W+VMI  + +   FD A++L+     L + +G       
Sbjct: 192 SGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELY----FLLQSEGVHANETV 247

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             S+ ++CA L  L LG  AH YILR+    +  ++++  +L+DMY +CGS+D A  VF+
Sbjct: 248 MVSVIASCAHLGALELGERAHDYILRN---KMTVNLILGTALVDMYARCGSIDKAIWVFD 304

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            +P RD  SW ++I GFA+HG AE AL+YF R+  +   +P  ITF  VLSAC+H G+V 
Sbjct: 305 QLPGRDALSWTTLIAGFAMHGYAEKALEYFSRME-KAGLTPREITFTAVLSACSHGGLVE 363

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            G + F+ M  +Y I P LEHYGC+VDLL RAG + EA   V+ MPMKP+A IW +LL A
Sbjct: 364 RGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGA 423

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
           C + H +  ++E   K +IE +    SG YVLLS +YA   +W +V  +R++M ++GV K
Sbjct: 424 C-RIHKNSEIAERAGKTLIELKPE-HSGYYVLLSNIYARTNKWENVENIRQMMKERGVVK 481

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PG +  E+DG  H+F  GD +HP+ +QI    + I  K++  GYT + +  A+ D  ++
Sbjct: 482 PPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGN-NDDALFDIDEE 540

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K+S++  HSE+LAIA  I+  K   PIR+ KNLRVC+DCH  TKLIS+++  E+IVRDR
Sbjct: 541 EKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDR 600

Query: 598 ARFHHFKDGSCSCMDYW 614
            RFHHFK G+CSCMDYW
Sbjct: 601 NRFHHFKGGACSCMDYW 617


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/639 (39%), Positives = 370/639 (57%), Gaps = 50/639 (7%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           P PQ+ + +  +N + + S      LL +     S  +L+Q+HAQ ++T  P    ++L 
Sbjct: 9   PIPQSPNRNQIHNVKPQSSETLKIDLLRNFN---SPFELRQVHAQIIKTNAPL---SILP 62

Query: 71  YSRIIHFASFA-DLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            +R+    +F     YA ++F  +E   P +F WN+ ++A A   D+   AI+LF R+  
Sbjct: 63  LTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEG-DSPIDAIMLFYRL-R 120

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           Q +V PD  T    L+AC  L   S G+  H  + K G  S++Y+ N ++H YASCG + 
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------- 227
            A  +F+ M +R +V+WN+MI   ++ G+ + A  LF RM                    
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 228 ------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
                       +   + +  T  ++ +ACA L  L LGM  H Y  RH       +V +
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH---GFKRNVRI 297

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           +N+LIDMY KCG L+ A +VFE M +R + SW+++I G A+HGRAE AL+ F  +  +  
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMS-QVG 356

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PN +TF+G+L AC+H G++SEGR +F  M  +Y I P +EHYGC+VDLL+RAG + EA
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
              + NMPMKP+ V+W +LL A C+ H +V ++EE  K ++E +  +  G YV+LS +YA
Sbjct: 417 HEFILNMPMKPNGVVWGALLGA-CRVHKNVEMAEEAIKHLLELD-PLNDGYYVVLSNIYA 474

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
            A RW D   VRK M D+ V K PG SSI +DG+ HEF AG+ SHP T+QI+   + + E
Sbjct: 475 EAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLE 534

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           +++ +GY P+ S   ++D  +  K   +  HSE+LA+  G++N     PIR+ KNLR+C+
Sbjct: 535 EMRLKGYVPNTS-VVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICE 593

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   KLIS I N EI+VRDR RFH F D SCSC DYW
Sbjct: 594 DCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/609 (40%), Positives = 357/609 (58%), Gaps = 50/609 (8%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIENPNSF 99
           C SM+++KQ H+  LR  L   +  +   SRI  F S +   D++YA ++F  + NP++F
Sbjct: 12  CSSMAEVKQQHSLLLRLGLSTNNHAM---SRIFTFCSLSKHGDINYALKLFTTLPNPDTF 68

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +NTL +A   S+   P   +LF   + Q  V P+  TFP  ++AC       + KQ HA
Sbjct: 69  LYNTLFKA-FFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLE---EEAKQLHA 124

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM----------------------- 196
           H+ K G   D Y  N+LIH Y + G LD A +VF  M                       
Sbjct: 125 HVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDE 184

Query: 197 ---------LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSAC 245
                     +++ VSWN MI  FV+   F  A  LFRRM++    E D +   ++ SAC
Sbjct: 185 AFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSAC 244

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
            G+  L  GMW H Y+ +     +V D  +  ++IDMYCKCG LD A  VF  +  + ++
Sbjct: 245 TGVGALEQGMWIHKYVEKT---GIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVS 301

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN +I GFA+HG+ E A++ F  +  E   +P+SITFV VL+AC H G+V EG  YF  
Sbjct: 302 SWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRY 361

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M++ + I P  EHYGC+VDLLARAG ++EA  ++  MPM PDA +  +LL A C+ H ++
Sbjct: 362 MVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGA-CRIHGNL 420

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L EEV  +VIE +    SG YV+L  +YAS  +W  V  VRKLM D+GV KEPG S IE
Sbjct: 421 ELGEEVGNRVIELDPEN-SGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIE 479

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           ++G+ +EF AG   HP  + IY  +  + E ++  G+ PD +   + D +++ +++ L  
Sbjct: 480 MEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPD-TDGVLHDLVEEERENPLFY 538

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G+L  K G  +RV KNLRVCKDCH+ +K+IS++++ +II+RDR+RFHHF +
Sbjct: 539 HSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSN 598

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 599 GECSCKDYW 607


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/504 (46%), Positives = 324/504 (64%), Gaps = 15/504 (2%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P  +  +  M+ + +VLP K +F   L++CA       G+  H  I K G   D+ +   
Sbjct: 12  PDFLGFYSGML-RNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTG 70

Query: 176 LIHFYASCGHLDLANKVFDNMLERSL--VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
           L+ FYA  G+++ A  +FDNM ER+   V+WN MI A+VQ GEF +A+ +F++MQ    +
Sbjct: 71  LLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVK 130

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P   T  S+ SACA L  L +G W H YI       L  DV++ N+LIDMYCKCG+L+ A
Sbjct: 131 PTEVTMVSLLSACAHLGALDMGEWIHGYIR---TKRLKIDVVLGNALIDMYCKCGALEAA 187

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFVGVLSACN 351
             VF  + ++++  WNSII+G  ++GR E A+  F  +V+E E   P+ +TFVG+LS C+
Sbjct: 188 IDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAF--IVMEKEGIKPDGVTFVGILSGCS 245

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           H G++S G+ YF  M+  Y + P +EHYGC+VDLL RAG + EAL L+  MPMKP++++ 
Sbjct: 246 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVL 305

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRKLM 470
            SLL AC + H    L E+V +Q++E +   C  G YV LS +YAS  RW+DV   RKLM
Sbjct: 306 GSLLRAC-QIHKDTKLGEQVTQQLLELDP--CDGGNYVFLSNLYASLSRWDDVNTCRKLM 362

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
             +GV K PGCSSIE++ I HEF AGDTSHPQ  QI  FLD I ++LK +G+ P+ +   
Sbjct: 363 IKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANV- 421

Query: 531 MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNV 590
           + D  ++ K+ ++R HSER+A+A G+++  PG  IRV KNLR C DCH   KLIS  F  
Sbjct: 422 LHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKR 481

Query: 591 EIIVRDRARFHHFKDGSCSCMDYW 614
           EIIVRDR RFHHF++GSCSC DYW
Sbjct: 482 EIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 9/223 (4%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           N NS TWNT+I A  +  +    AI +FQ+M +  NV P + T    L ACA+L A   G
Sbjct: 95  NSNSVTWNTMISAYVQCGEFGT-AISMFQQM-QSENVKPTEVTMVSLLSACAHLGALDMG 152

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H +I  + L  DV + N+LI  Y  CG L+ A  VF  +  +++  WN +I      
Sbjct: 153 EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMN 212

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  + A+  F  M+    +PDG TF  I S C+    LS G    + +L    + L   V
Sbjct: 213 GRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLG--VYGLEPGV 270

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
                ++D+  + G L  A ++  +MP +     NS++LG  L
Sbjct: 271 EHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLGSLL 309


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/582 (41%), Positives = 351/582 (60%), Gaps = 20/582 (3%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQ----QHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S    C  + + KQ+H  + +         Q+  + +YS      S      A +VF ++
Sbjct: 145 SLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS------ARKVFDKM 198

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            N +  +W T+I A A+  D   +AI LF+RM E  +V P++ T    L ACA       
Sbjct: 199 VNKSVVSWATMIGAYAQW-DLPHEAIKLFRRM-EIASVKPNEITLVNVLTACARSRDLET 256

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            KQ H +I + G+     + ++L+  Y  CG   LA  +F+ M E++L  WN+MI+  V+
Sbjct: 257 AKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVE 316

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +++ AL LF  MQ+   + D  T  S+  AC  L  L LG W H YI +     +  D
Sbjct: 317 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE---KIEVD 373

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V +  +L+DMY KCGS++ A +VF+ MP++D+ +W ++I+G A+ G+   AL+ F  + +
Sbjct: 374 VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQM 433

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            E   P++ITFVGVL+AC+H G+V+EG  YF+ M N+Y I P +EHYGC+VD+L RAG I
Sbjct: 434 SE-VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 492

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
            EA  L+ NMPM PD  +   LL AC + H ++V++E  A+Q+IE +     G YVLLS 
Sbjct: 493 AEAEDLIQNMPMAPDYFVLVGLLSAC-RIHGNLVVAERAAQQLIELDPKN-GGTYVLLSN 550

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +Y+S + W     +R+LM ++ + K PGCS+IE+ G+ HEF  GD SHPQ+ +IY  LD 
Sbjct: 551 IYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDD 610

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           +  +LKS GY PD S+  + D  +  K++ L LHSE+LAIA G+L+  PG PIRV KNLR
Sbjct: 611 MMRRLKSAGYVPDKSEV-LFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLR 669

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   K IS ++N EIIVRDR RFHHF  GSCSC D+W
Sbjct: 670 VCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 213/388 (54%), Gaps = 21/388 (5%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD---LDYAFRV 89
           H  LLS L +C +MSQLKQIHAQ LRT L          S+I+ F +  D   L YA  V
Sbjct: 41  HPCLLS-LEKCTTMSQLKQIHAQMLRTCL---FVDPFSASKIVAFCALHDSGSLPYARLV 96

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F QI NP +FT N++IR      +   QAI+ +Q M+ QG + PD+ TFP   K+C  L 
Sbjct: 97  FNQIPNPTTFTCNSIIRGYTNK-NLPRQAILFYQLMMLQG-LDPDRFTFPSLFKSCGVL- 153

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
              +GKQ H H  K G  SD YI N+L++ Y++CG L  A KVFD M+ +S+VSW  MI 
Sbjct: 154 --CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIG 211

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           A+ Q+     A+KLFRRM+I   +P+  T  ++ +ACA    L      H YI    D +
Sbjct: 212 AYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYI----DET 267

Query: 269 LVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            +    ++ ++L+D+YCKCG   +AR +F  MP+++L  WN +I G       E AL  F
Sbjct: 268 GIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLF 327

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + + +      + +T   +L AC H G +  G+ +  V I +  I   +     LVD+ A
Sbjct: 328 NEMQL-SGVKGDKVTMASLLIACTHLGALELGK-WLHVYIEKEKIEVDVALGTALVDMYA 385

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G+I+ A+ +   MP K D + W +L+
Sbjct: 386 KCGSIESAMRVFQEMPEK-DVMTWTALI 412


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/610 (40%), Positives = 358/610 (58%), Gaps = 38/610 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALP---QQHKTLL-IYSR------------------ 73
           LL S  + K+  + +QIHAQ ++         H +L+ +Y+R                  
Sbjct: 89  LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148

Query: 74  -------IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
                  I  +AS  D+  A +VF  I   +  +WN +I     +   + +A+ LF+ M+
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYE-EALELFKEMM 207

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGH 185
            + NV PD+ T    L ACA   +   G++ H  +    G  S + I N+ I  Y+ CG 
Sbjct: 208 -RTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGD 266

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSA 244
           +++A+ +F+ +  + +VSWN +I  +     +  AL LF+ M    E P+  T  S+  A
Sbjct: 267 VEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 326

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA L  + +G W H YI +     +     +  SLIDMY KCG ++ A QVF SM  + L
Sbjct: 327 CAHLGAIDIGRWIHVYIDKRLK-GVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSL 385

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
           +SWN++I GFA+HGRA AA   F R+  +    P+ IT VG+LSAC+H G++  GR  F 
Sbjct: 386 SSWNAMIFGFAMHGRANAAFDLFSRMR-KNGIEPDDITLVGLLSACSHSGLLDLGRHIFK 444

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            +  +YNITP LEHYGC++DLL  AG   EA  ++  MPM+PD VIW SLL AC K H +
Sbjct: 445 SVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKAC-KMHGN 503

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           + L+E  A++++E E    SG YVLLS +YA+A RW DV  +R+++  KG+ K PGCSSI
Sbjct: 504 LELAESFAQKLMEIEPE-NSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSI 562

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           EID + HEF  GD  HPQ+++IY  L+ +D  L+  G+ PD S+     E ++ K+ +LR
Sbjct: 563 EIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEME-EEWKEGALR 621

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAIA G+++ KPG  + V KNLRVC++CHE TKLIS+I+  EI+ RDR RFHHF+
Sbjct: 622 HHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFR 681

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 682 DGVCSCCDYW 691



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 195/401 (48%), Gaps = 48/401 (11%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIHFA----SFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           HAQ ++T L   H T    S+++        F  L YA  VF   + PN   WNT++R  
Sbjct: 2   HAQMVKTGL---HNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGL 58

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
           A S D     + ++ RM+  G+V P+ +TFPF LK+CA    F +G+Q HA + K G   
Sbjct: 59  ASSSDL-VSPLEMYVRMVSXGHV-PNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCEL 116

Query: 169 DVYINNSLIHFYASCGHLD-------------------------------LANKVFDNML 197
           D Y + SLI  YA  G L+                                A KVFD + 
Sbjct: 117 DRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXIT 176

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMW 256
           ER +VSWN MI  +V+   ++ AL+LF+  M+    PD  T  S+ SACA   ++ LG  
Sbjct: 177 ERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGRE 236

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H  +  H  H   + + + N+ I +Y KCG ++IA  +FE +  +D+ SWN++I G+  
Sbjct: 237 IHTLVDDH--HGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH 294

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY--NITP 374
               + AL  F  + +    SPN +T + VL AC H G +  GR +  V I++    +T 
Sbjct: 295 MNLYKEALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAIDIGR-WIHVYIDKRLKGVTN 352

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                  L+D+ A+ G+I EA H V N  M      W +++
Sbjct: 353 GSALRTSLIDMYAKCGDI-EAAHQVFNSMMHKSLSSWNAMI 392


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/584 (42%), Positives = 356/584 (60%), Gaps = 16/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +   +   +++  Q+        H+ ++ Y+ +I  +AS   +  A ++F 
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQS-------SHRDVVSYTALITGYASKGYIASAQKMFD 178

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I   A + + K +A+ LF+ M++  NV PD+ T    + ACA   + 
Sbjct: 179 EIPIKDVVSWNAMISGYAETGNNK-EALELFKEMMKT-NVRPDESTMVSVVSACAQSASI 236

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI  Y  CG ++ A  +F+ +  + ++SWN +I  +
Sbjct: 237 ELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGY 296

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     + 
Sbjct: 297 THMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK-GVA 355

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                  SLIDMY KCG ++ A+QVF+S+  R L+SWN++I GFA+HGRA AA   F R+
Sbjct: 356 NASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 415

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
              E   P+ ITFVG+LSAC+H GM+  GR  F  M  +Y ITP LEHYGC++DLL  +G
Sbjct: 416 RKNE-IEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSG 474

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  +++ M M+PD VIW SLL AC K H +V L E  A+ +I+ E     G YVLL
Sbjct: 475 LFKEAEEMINTMEMEPDGVIWCSLLKAC-KMHGNVELGESYAQNLIKIEPK-NPGSYVLL 532

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V  +R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 533 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 592

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 593 EEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 651

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CHE TKLIS+I+  EII RDR RFHHF+DG CSC DYW
Sbjct: 652 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 203/406 (50%), Gaps = 55/406 (13%)

Query: 47  SQLKQIHAQALRTALPQQHKTLLIYSRIIHFA----SFADLDYAFRVFYQIENPNSFTWN 102
           S L+ IHAQ ++T L   H T    S++I F      F  L YA  VF  I+ PN   WN
Sbjct: 1   SSLRMIHAQMIKTGL---HNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWN 57

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           T+ R  A S D    A+ L+  MI  G +LP+ +TFPF LK+CA   AF +G+Q H H+ 
Sbjct: 58  TMFRGHALSSDP-VSALYLYVCMISLG-LLPNCYTFPFLLKSCAKSKAFREGQQIHGHVL 115

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER----------------------- 199
           K G   D+Y++ SLI  Y   G L+ A KVFD    R                       
Sbjct: 116 KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQK 175

Query: 200 --------SLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
                    +VSWN MI  + + G    AL+LF+  M+    PD  T  S+ SACA  A+
Sbjct: 176 MFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 235

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           + LG   H++I    DH   +++ + N+LID+Y KCG ++ A  +FE +  +D+ SWN++
Sbjct: 236 IELGRQVHSWI---DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL 292

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE- 369
           I G+      + AL  F  + +    SPN +T + +L AC H G +  GR +  V IN+ 
Sbjct: 293 IGGYTHMNLYKEALLLFQEM-LRSGESPNDVTMLSILPACAHLGAIEIGR-WIHVYINKR 350

Query: 370 -YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
              +     H   L+D+ A+ G+I+ A  +        D+++ RSL
Sbjct: 351 LKGVANASSHRTSLIDMYAKCGDIEAAQQVF-------DSILNRSL 389


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/624 (39%), Positives = 365/624 (58%), Gaps = 56/624 (8%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVF 90
           S L + L  C ++ Q  +I +Q + T            SR++ F++   F  LDY+ ++F
Sbjct: 30  SILETHLHNCHNLKQFNRILSQMILTGFISD---TFAASRLLKFSTDSPFIGLDYSLQIF 86

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +IEN N F WNT++RA  +S  A+ +A++L++ M+ + NV PD +T+P  ++ACA    
Sbjct: 87  DRIENSNGFMWNTMMRAYIQSNSAE-KALLLYKLMV-KNNVGPDNYTYPLVVQACAVRLL 144

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN--------------- 195
              GK+ H H+ K G  SDVY+ N+LI+ YA CG++  A K+FD                
Sbjct: 145 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 204

Query: 196 -------------------MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDG 235
                              M E+ +VSW+ +I  + Q G ++ AL +F  M       D 
Sbjct: 205 YVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDE 264

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI----DMYCKCGSLDI 291
               S+ SACA L+ +  G   H  ++R    S V    + N+LI    DMY KCG ++ 
Sbjct: 265 VVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVN---LQNALIHMYSDMYMKCGCVEN 321

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           A +VF  M ++ ++SWN++I+G A++G  E +L  F  +       PN ITF+GVL AC 
Sbjct: 322 ALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMK-NNGVIPNEITFMGVLGACR 380

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           H G+V EGR +F  MI ++ I P ++HYGC+VDLL RAG ++EA  L+ +MPM PD   W
Sbjct: 381 HMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATW 440

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471
            +LL AC KKH    + E V +++IE +     G +VLLS ++AS   W DV  VR +M 
Sbjct: 441 GALLGAC-KKHGDTEMGERVGRKLIELQPD-HDGFHVLLSNIFASKGDWEDVLEVRGMMK 498

Query: 472 DKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
            +GV K PGCS IE +G+ HEF AGD +HP   ++ G L+ + ++LK  GY PD ++ ++
Sbjct: 499 QQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSL 558

Query: 532 -VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNV 590
            +DE  + K+++L  HSE+LAIA G+L + P  PIR+ KNLR+C DCH   KLIS+ +  
Sbjct: 559 DIDE--EEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAR 616

Query: 591 EIIVRDRARFHHFKDGSCSCMDYW 614
           EI+VRDR RFH+FK+G+CSCMDYW
Sbjct: 617 EIVVRDRHRFHYFKEGACSCMDYW 640


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/584 (42%), Positives = 357/584 (61%), Gaps = 16/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +   +   +++  Q+        H+ ++ Y+ +I  +AS   +  A ++F 
Sbjct: 141 HTSLISMYVQNGRLEDARKVFDQS-------SHRDVVSYTALITGYASKGYIASAQKMFD 193

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I   A + + K +A+ LF+ M++  NV PD+ T    + ACA   + 
Sbjct: 194 EIPIKDVVSWNAMISGYAETGNNK-EALELFKEMMKT-NVRPDESTMVSVVSACAQSASI 251

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI  Y  CG ++ A  +F+ +  + ++SWN +I  +
Sbjct: 252 ELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGY 311

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     + 
Sbjct: 312 THMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK-GVA 370

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                  SLIDMY KCG ++ A+QVF+S+  R L+SWN++I GFA+HGRA AA   F R+
Sbjct: 371 NASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
              E   P+ ITFVG+LSAC+H GM+  GR  F  M  +Y ITP LEHYGC++DLL  +G
Sbjct: 431 RKNE-IEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSG 489

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  +++ M M+PD VIW SLL AC K +A+V L E  A+ +I+ E     G YVLL
Sbjct: 490 LFKEAEEMINTMEMEPDGVIWCSLLKAC-KMYANVELGESYAQNLIKIEPK-NPGSYVLL 547

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V  +R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 548 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 607

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CHE TKLIS+I+  EII RDR RFHHF+DG CSC DYW
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 212/421 (50%), Gaps = 56/421 (13%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA----SFADLDYAF 87
           NH SL S L  CK++  L+ IHAQ ++T L   H T    S++I F      F  L YA 
Sbjct: 2   NHPSL-SLLHNCKTLQSLRMIHAQMIKTGL---HNTNYALSKLIEFCVLSPHFDGLPYAI 57

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I+ PN   WNT+ R  A S D    A+ L+  MI  G +LP+ +TFPF LK+CA 
Sbjct: 58  SVFETIQEPNLLIWNTMFRGHALSSDP-VSALYLYVCMISLG-LLPNCYTFPFLLKSCAK 115

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-------- 199
             AF +G+Q H H+ K G   D+Y++ SLI  Y   G L+ A KVFD    R        
Sbjct: 116 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 175

Query: 200 -----------------------SLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDG 235
                                   +VSWN MI  + + G    AL+LF+  M+    PD 
Sbjct: 176 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 235

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            T  S+ SACA  A++ LG   H++I    DH   +++ + N+LID+Y KCG ++ A  +
Sbjct: 236 STMVSVVSACAQSASIELGRQVHSWI---DDHGFGSNLKIVNALIDLYIKCGEVETACGL 292

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           FE +  +D+ SWN++I G+      + AL  F  + +    SPN +T + +L AC H G 
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNDVTMLSILPACAHLGA 351

Query: 356 VSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           +  GR +  V IN+    +     H   L+D+ A+ G+I+ A  +        D+++ RS
Sbjct: 352 IEIGR-WIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVF-------DSILNRS 403

Query: 414 L 414
           L
Sbjct: 404 L 404


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 369/616 (59%), Gaps = 43/616 (6%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           NHS L S +  CKS++Q+KQ HA  + TA   Q    +I ++ +   + A L YA ++F 
Sbjct: 178 NHSKLSSLIDLCKSINQIKQTHANLITTA---QITLPVIANKFLKNVALASLTYAHKLFD 234

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           QI  P+ F +NT+I++ + S  +   +I +F+ +I      P++++F FA  AC      
Sbjct: 235 QIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCV 294

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHF-------------------------------Y 180
            +G+Q   H  K GL  +V++ N+LI                                 Y
Sbjct: 295 REGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAY 354

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQ 239
              G++ LA ++FD M ER +VSW+ +I  +VQ G F  AL  F +M Q   +P+ YT  
Sbjct: 355 VGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMV 414

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF-ES 298
           S  +AC+ L  L  G W H YI R  D+  + D L+  SLIDMY KCG +D A  VF E 
Sbjct: 415 SALAACSNLVALDQGKWIHVYIRR--DNIKMNDRLLA-SLIDMYAKCGEIDSASSVFHEH 471

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
             KR +  WN++I GFA+HG+ E A+  F+++ VE+  SPN +TF+ +L+AC+H  MV E
Sbjct: 472 KVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEK-VSPNKVTFIALLNACSHGYMVKE 530

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G+ YF++M ++Y I P +EHYGC+VDLL+R+G++ ++  ++ +MPM PD  IW +LL+AC
Sbjct: 531 GKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNAC 590

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR-KLMTDKGVTK 477
            + +  +     + + + E +     G  VLL  +Y+++ RWN+  +VR K   +    K
Sbjct: 591 -RIYKDMERGYRIGRIIKEIDPNHI-GCNVLLGNIYSTSGRWNEARMVREKNEINSDRKK 648

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PG SSIE++G+ HEF  GD SHPQ+++IY FLD +  KLK  GY P+  +  +  + ++
Sbjct: 649 IPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEE 708

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K+++L +HSE+LAIA G++N  PG PIR+ KNLRVC DCH+ TK IS++++  IIVRDR
Sbjct: 709 DKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDR 768

Query: 598 ARFHHFKDGSCSCMDY 613
            R+HHFKDG CSC DY
Sbjct: 769 MRYHHFKDGICSCKDY 784


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/584 (39%), Positives = 347/584 (59%), Gaps = 17/584 (2%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           L  L  C ++ +L Q+H   ++     Q+  L++       ++   + YA  + + +E+ 
Sbjct: 11  LDILQACNTLPKLAQLHTHIIKLGF--QNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDA 68

Query: 97  ---NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              ++F ++T+IRA A S  +K  AI  +  M+  G + P+K+ FPF LKACA L   + 
Sbjct: 69  RVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYG-ISPNKYAFPFVLKACAGLRDLNL 127

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASC-GHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           GK  H  + K G   D+++ N+++H Y  C G ++ A K+FD M +   V+W  MI  + 
Sbjct: 128 GKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYA 187

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + G+   A+ LFR+MQI    PD  T  S+ SAC  L  L LG W  +YI +     ++ 
Sbjct: 188 RLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKE---RVLK 244

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
            V ++N+L+DM+ KCG +D A  +F +M KR + SW S+I+G A+HGR   A+  F+ + 
Sbjct: 245 TVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMK 304

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 P  I F+G+LSAC+H G+V  GR YF  M  ++ I P +EHYGC+VDLL+RAG 
Sbjct: 305 AS-GMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGL 363

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + EAL  V  MP++P+ +IWR+L+ AC + H  + L E ++KQ+I +E  +    YVLLS
Sbjct: 364 VTEALEFVERMPIEPNPIIWRTLISAC-RVHGELKLGESISKQLIRNEP-MHESNYVLLS 421

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +Y     W     +R  M  KG+ K PG + IE+D   HEF  GD SH Q  +I   ++
Sbjct: 422 NIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVN 481

Query: 512 LIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
            +  ++K  GY P  ++  + +DE D  K+ +L  HSE+LAIA  +LN  PG PIR+ KN
Sbjct: 482 EMGREMKRAGYAPTTTEVFLDIDEED--KEDALSRHSEKLAIAFALLNTPPGSPIRITKN 539

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH  +K IS+I+N EI++RDR+RFHHF+DG CSC D+W
Sbjct: 540 LRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/558 (43%), Positives = 336/558 (60%), Gaps = 48/558 (8%)

Query: 97  NSFTWNTLIRA--CARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
            SF WNTLIRA   AR+    P    I +F RM   G V PD HTFPF L++ A      
Sbjct: 23  ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHG-VQPDFHTFPFLLQSFASPSLLH 81

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN----------------- 195
            G+  HA I + GL  D ++  SLI  Y+SCG+L  A +VFD                  
Sbjct: 82  LGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANF 141

Query: 196 --------------MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----FEPDGYT 237
                         M ER+++SW+ MI+ +V+ G++  AL LFR MQ+L      P+ +T
Sbjct: 142 QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
              + +AC  L  L  G WAHAYI + C   +  DV++  +LIDMY KCGS++ A  VF 
Sbjct: 202 MSGVLAACGRLGALEHGKWAHAYIDK-C--GMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 298 SM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           ++ P +D+ +W+++I G A+HG AE  +  F +++  +   PN++TF+ V  AC H G+V
Sbjct: 259 NLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMI-NQGVRPNAVTFLAVFCACVHGGLV 317

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
           SEG+DY   M  +Y+I P ++HYGC+VDL  RAG I EA ++V +MPM+PD ++W +LL 
Sbjct: 318 SEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLS 377

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
              + H  +   E   K++IE E    SG YVLLS VYA   RW DV  VR LM   G+ 
Sbjct: 378 GS-RMHGDIETCELALKKLIELEP-TNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIK 435

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PGCS IE+ G+ HEFF GD SHP+T+QI+  L+ I E+LK  GY  + ++  ++D  +
Sbjct: 436 KVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGN-TKEVLLDLDE 494

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
           +GK+ +L LHSE+LA+A G L   PG PIR+ KNLR+C+DCH   K+IS++F+ EIIVRD
Sbjct: 495 EGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRD 554

Query: 597 RARFHHFKDGSCSCMDYW 614
             RFHHF  G CSC DYW
Sbjct: 555 CNRFHHFTQGLCSCRDYW 572



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 177/396 (44%), Gaps = 47/396 (11%)

Query: 11  PTPQTHSH-SIFNNNRNEG---SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHK 66
           PT  THS  SIF   R  G    F+    LL S      +   + +HAQ LR  L     
Sbjct: 41  PTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAID-- 98

Query: 67  TLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRA--------CARSVDA---- 114
             +  S I  ++S  +L +A +VF +I  P+  +WN++I A         AR++ A    
Sbjct: 99  PFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPE 158

Query: 115 ------------------KPQAIVLFQRMIEQG--NVLPDKHTFPFALKACAYLFAFSQG 154
                               +A+ LF+ M   G  +V P++ T    L AC  L A   G
Sbjct: 159 RNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG 218

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDAFVQ 213
           K AHA+I K G+  DV +  +LI  YA CG ++ A  VF N+   + +++W+ MI     
Sbjct: 219 KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAM 278

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC-DHSLVT 271
            G  +  + LF +M      P+  TF ++  AC     +S G     Y+ R   D+S++ 
Sbjct: 279 HGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEG---KDYLRRMTEDYSIIP 335

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +     ++D+Y + G +  A  V +SMP + D+  W +++ G  +HG  E       +L
Sbjct: 336 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL 395

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +  E    NS  +V + +    RG   + R   D+M
Sbjct: 396 IELE--PTNSGAYVLLSNVYAKRGRWEDVRHVRDLM 429


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/522 (45%), Positives = 321/522 (61%), Gaps = 40/522 (7%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M+ +G V P++ T    +KACA + +  QGKQAH +I K G  SDV +  +L+H YA CG
Sbjct: 1   MVGKG-VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCG 59

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM----------------- 227
            L+ A  VFD M ERS  +WN MI    Q  +   ALKLF  M                 
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 228 ---------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                          +   + D +   S+ SACA LA L LG   HAY+++        D
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS---GFALD 176

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           ++V ++L+DMY K GS++ A QVF+ MP+R+  SWNSII G A HGR   A+  F++++ 
Sbjct: 177 IVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQML- 235

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +    PN I+FVGVLSAC+H G+V+EGR YF++M   Y I P + HY C++DLL RAG +
Sbjct: 236 QAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCL 295

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           DEA + ++ MP++PD  +W +LL AC + H +  L++ +A+ ++  E  I +G+YVLLS 
Sbjct: 296 DEAENFINGMPVEPDVSVWGALLGAC-RIHGNTELAKRIAEHLLGMEVQI-AGIYVLLSN 353

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA+A +W+D   VRKLM D+GV K+PG S IE+  I H F AG+TSHPQ K+I+ FL+ 
Sbjct: 354 IYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLES 413

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           +  K+K+ GY P+     + D  DD K+ SL  HSE+LAIA GI+N  PG  IRV KNLR
Sbjct: 414 LSRKMKAAGYVPN-KNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLR 472

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH V K IS  F  +I+VRD  RFHHFKDG CSC DYW
Sbjct: 473 VCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 133/265 (50%), Gaps = 10/265 (3%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I   A   D+  A ++FY++   +  +W  +I   A++     +++ +F +M + G +  
Sbjct: 83  ITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN-GYGDESLNVFNQMRKTG-MKS 140

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D+      L ACA L A   G+Q HA++ + G   D+ + ++L+  YA  G ++ A +VF
Sbjct: 141 DRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVF 200

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA--GLAT 250
           D M +R+ VSWN +I    Q G  + A+ LF +M Q   +P+  +F  + SAC+  GL  
Sbjct: 201 DKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVN 260

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNS 309
              G     + L   ++ +V DV     +ID+  + G LD A      MP + D++ W +
Sbjct: 261 EGRGY----FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGA 316

Query: 310 IILGFALHGRAEAALKYFDRLVVEE 334
           ++    +HG  E A +  + L+  E
Sbjct: 317 LLGACRIHGNTELAKRIAEHLLGME 341



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 98/200 (49%), Gaps = 11/200 (5%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSR 73
           S ++FN  R  G  ++   + S L+ C  ++ L   +Q HA  +++        +++ S 
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD---IVVGSA 182

Query: 74  IIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           ++  +A    ++ A +VF ++   N  +WN++I  CA+       A++LF++M++ G + 
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGN-DAVLLFEQMLQAG-IK 240

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANK 191
           P++ +F   L AC++    ++G+     + +  G+V DV     +I      G LD A  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 192 VFDNM-LERSLVSWNVMIDA 210
             + M +E  +  W  ++ A
Sbjct: 301 FINGMPVEPDVSVWGALLGA 320


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/612 (39%), Positives = 355/612 (58%), Gaps = 47/612 (7%)

Query: 40  LTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           L+ CKS  Q+KQ+HA+ + T L   P     LL     I    FA + YA  VF     P
Sbjct: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSI----FAPISYAHMVFDHFPQP 63

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           + F +NT+I+  A S  +   +   F+ +I +  ++P++++F FA K C       +G+Q
Sbjct: 64  DLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQ 123

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
              H  K GL +++++ N+LI  Y +   +  A KVFD    R + SWN+M+  + + G+
Sbjct: 124 VRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGK 183

Query: 217 FDSALKLFRRM----------------QILF----------------EPDGYTFQSITSA 244
            D A +LF  M                Q+ +                 P+ YT  S  +A
Sbjct: 184 MDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAA 243

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KR 302
           CA L  L  G W H YI +   +++  +  +   LIDMY KCG L+ A ++F S P  KR
Sbjct: 244 CANLVALDQGRWMHVYIKK---NNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKR 300

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            +  WN++I GFA+HG+++ A++ F+++ +E+  SPN +TFV +L+AC+H   V EGR Y
Sbjct: 301 KVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEK-VSPNKVTFVALLNACSHGNRVEEGRYY 359

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F+ M + Y + P LEHYGCLVDLL RAG + EA  ++S+M + PD  IW +LL A CK H
Sbjct: 360 FESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSA-CKIH 418

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
               + E V K V E +     G +VLL+ +Y+    WN+   +R+ + + G  K PGCS
Sbjct: 419 KDAEMGERVGKIVKELDPNHL-GCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCS 477

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
           SIE++G+ H+F  GD SHPQTKQ+Y FLD +  KLK  GY P+  +  +  + ++ ++++
Sbjct: 478 SIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETA 537

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L  HSE+LAIA G++N  P  PIR+ KNLRVC DCH   K IS++++ EIIVRDR R+HH
Sbjct: 538 LLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHH 597

Query: 603 FKDGSCSCMDYW 614
           FKDG+CSC DYW
Sbjct: 598 FKDGTCSCNDYW 609



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 27/206 (13%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH 76
           IF+N   +G   N  +L SSL  C ++  L Q   +H    +  +  Q    L+   I  
Sbjct: 221 IFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNI--QMNERLLAGLIDM 278

Query: 77  FASFADLDYAFRVFYQIENP----NSFTWNTLIRACARSVDAKPQAIVLFQRM-IEQGNV 131
           +A   +L++A ++F    NP      + WN +I   A    +K +AI +F++M IE+  V
Sbjct: 279 YAKCGELEFASKLFNS--NPRLKRKVWPWNAMIGGFAVHGKSK-EAIEVFEQMKIEK--V 333

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF------YASCGH 185
            P+K TF   L AC++     +G+      +   + S   +   L H+          G 
Sbjct: 334 SPNKVTFVALLNACSHGNRVEEGR-----YYFESMASHYRVKPELEHYGCLVDLLGRAGR 388

Query: 186 LDLANKVFDNM-LERSLVSWNVMIDA 210
           L  A ++  +M L   +  W  ++ A
Sbjct: 389 LKEAEEIISSMHLTPDVAIWGALLSA 414


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/615 (42%), Positives = 368/615 (59%), Gaps = 36/615 (5%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLL 69
           P P TH            +  +  +LL       S++  KQIHA+ALR A +P  H  LL
Sbjct: 7   PAPSTHP-----------ALRHCVALLRLHLPSPSVAAAKQIHARALRAAGVPLSHP-LL 54

Query: 70  IYSRIIHFASF----ADLDYAFRVFY-QIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQ 123
               + H AS       L YA  V    + +P+ F+ NT++R  A S  A P+ A+ L +
Sbjct: 55  AKHLLFHLASLRAGPPPLLYAVTVLSCLLPDPDPFSLNTVLRIAASS--AHPRIALALHR 112

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
           R +      PD HT+P  L+AC  L A  +G+  HA   K GLV+ V++ NSL+H Y +C
Sbjct: 113 RRLAP----PDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGAC 168

Query: 184 GHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQS 240
           G  + A++VFD +  LER+LVSWN +++ F   G  +  L +FR  ++    PDG+T  S
Sbjct: 169 GLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVS 228

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + +ACA +  L+LG   H +  +     LV +  V N+LID+Y KCG ++ A +VFE M 
Sbjct: 229 VLTACAEIGALTLGRRVHVFASKV---GLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMG 285

Query: 301 -KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
             R + SW S+I+G A +G  + AL+ F  L+  E   P  IT VGVL AC+H G+V +G
Sbjct: 286 VARTVVSWTSLIVGLAGNGFGKDALELFG-LMERERLIPTDITMVGVLYACSHCGLVDDG 344

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
             YF+ M ++Y I P +EH GC+VDLL RAG ++EA + ++ MP++P+AV+WR+LL AC 
Sbjct: 345 FRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACA 404

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
             H  + L E    +++E + G  SG YVLLS +YA+  RW D  ++RK M   GV K P
Sbjct: 405 M-HKKLELGEAAWARLVELDPG-HSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNP 462

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           G S +E+    +EF  GD SHP++ QIY  L  I E+L+ +GY P  S   + D  ++ K
Sbjct: 463 GHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNV-LADIEEEEK 521

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           +++L  HSERLAIA  +L   PG PIR+ KNLR+C DCH V KLIS++++ EIIVRDR+R
Sbjct: 522 ETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSR 581

Query: 600 FHHFKDGSCSCMDYW 614
           FHHFK G CSC DYW
Sbjct: 582 FHHFKGGECSCKDYW 596


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/584 (41%), Positives = 353/584 (60%), Gaps = 16/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   + + +    ++  ++        H+ ++ Y+ ++  +AS   ++ A  +F 
Sbjct: 101 HTSLISMYVQNERLEDAHKVFDRS-------SHRDVVSYTALVTGYASRGYIESARNMFD 153

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I     + + K +A+ LF+ M++  NV PD+ T    + A A   + 
Sbjct: 154 EIPVKDVVSWNAMISGYVETGNYK-EALELFKEMMKT-NVRPDESTMVTVISASARSGSI 211

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI FY+ CG ++ A  +F  +  + ++SWN++I  +
Sbjct: 212 ELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGY 271

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     + 
Sbjct: 272 THLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLK-GVT 330

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               +  SLIDMY KCG ++ A QVF SM  + L +WN++I GFA+HGRA AA   F R+
Sbjct: 331 NASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRM 390

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
              E   P+ ITFVG+LSAC+H GM+  GR  F  M + Y ITP LEHYGC++DLL  +G
Sbjct: 391 RKNE-IKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSG 449

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  ++S M M+PD VIW SLL AC K H +V L E+ A+ + + E     G YVLL
Sbjct: 450 LFKEAEEMISTMTMEPDGVIWCSLLKAC-KMHGNVELGEKFAQNLFKIEPN-NPGSYVLL 507

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V  +R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 508 SNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 567

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KP   + + KN
Sbjct: 568 EEMEVLLQEAGFVPDTSEVLQEME-EEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKN 626

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CHE TKLIS+I+  EII RDR RFHHF+DG CSC DYW
Sbjct: 627 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 184/370 (49%), Gaps = 42/370 (11%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F  L YA  VF  I+ PN   WNT+ R  A S D    A+ L+  MI  G +LP+ +TFP
Sbjct: 10  FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDP-VSALKLYVCMISLG-LLPNSYTFP 67

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF-------------------- 179
           F LK+CA L A  +G Q H H+ K G   D+Y++ SLI                      
Sbjct: 68  FLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHR 127

Query: 180 -----------YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-M 227
                      YAS G+++ A  +FD +  + +VSWN MI  +V+ G +  AL+LF+  M
Sbjct: 128 DVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM 187

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +    PD  T  ++ SA A   ++ LG   H++I    DH   +++ + N+LID Y KCG
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWI---ADHGFGSNLKIVNALIDFYSKCG 244

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ A  +F  +  +D+ SWN +I G+      + AL  F  + +    SPN +T + +L
Sbjct: 245 EMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEM-LRSGESPNDVTMLSIL 303

Query: 348 SACNHRGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            AC H G +  GR +  V I++    +T        L+D+ ++ G+I EA H V N  + 
Sbjct: 304 HACAHLGAIDIGR-WIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDI-EAAHQVFNSMLH 361

Query: 406 PDAVIWRSLL 415
                W +++
Sbjct: 362 KSLPAWNAMI 371


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/590 (43%), Positives = 353/590 (59%), Gaps = 20/590 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF------ADLDYAFRV 89
           LL+ L  C S+  L Q+HA A++     Q     + +R++   +       A L YA +V
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFV-TRLLTLCTEQGAEAPAHLAYARQV 89

Query: 90  FYQIENPNSFTW-NTLIRACARSVDAKPQAIV---LFQRMIEQGNVLPDKHTFPFALKAC 145
           F +I +P    W NTL+R  AR       A     +F RM+E+G V PD +TF   LKAC
Sbjct: 90  FDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEG-VAPDTYTFVSLLKAC 148

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A  +G+QAH    K G     Y+  +LI+ YA CG +  A  +FD M    +VS+N
Sbjct: 149 ASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYN 208

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI A V+      AL LFR MQ    +P   T  S+ SACA L  L LG W H YI + 
Sbjct: 209 AMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKM 268

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              SLV    VN +LIDMY KCGSL+ A  VF+ M  RD  +W+ +++ +A HG    A+
Sbjct: 269 RLDSLVK---VNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAI 325

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F+ +  ++   P+ +TF+GVL AC+H GMVSEG  YFD M  EY I   ++HYGC+ D
Sbjct: 326 SMFEEMK-KQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTD 383

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LLAR+G ++ A   +  +P+KP A++WR+LL AC   H  V + + V ++++E +     
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG-HGDVDMGKRVFERILELDDS-HG 441

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YV+ S + A+  RW ++ +VRKLM++KGV K PGCSSIEID + HEFFAGD SHP ++
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +    +D + E+LK  GY P+ S    V+  ++ K +SLR HSE+LAI+ G+LN  PG  
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+ KNLRVC DCH + KL+S +FN  II+RD  RFHHF+DG CSC DYW
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/590 (43%), Positives = 353/590 (59%), Gaps = 20/590 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF------ADLDYAFRV 89
           LL+ L  C S+  L Q+HA A++     Q     + +R++   +       A L YA +V
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFV-TRLLTLCTEQGAEAPAHLAYARQV 89

Query: 90  FYQIENPNSFTW-NTLIRACARSVDAKPQAIV---LFQRMIEQGNVLPDKHTFPFALKAC 145
           F +I +P    W NTL+R  AR       A     +F RM+E+G V PD +TF   LKAC
Sbjct: 90  FDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEG-VAPDTYTFVSLLKAC 148

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A  +G+QAH    K G     Y+  +LI+ YA CG +  A  +FD M    +VS+N
Sbjct: 149 ASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYN 208

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI A V+      AL LFR MQ    +P   T  S+ SACA L  L LG W H YI + 
Sbjct: 209 AMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKM 268

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              SLV    VN +LIDMY KCGSL+ A  VF+ M  RD  +W+ +++ +A HG    A+
Sbjct: 269 RLDSLVK---VNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAI 325

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F+ +  ++   P+ +TF+GVL AC+H GMVSEG  YFD M  EY I   ++HYGC+ D
Sbjct: 326 SMFEEMK-KQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTD 383

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LLAR+G ++ A   +  +P+KP A++WR+LL AC   H  V + + V ++++E +     
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG-HGDVDMGKRVFERILELDDS-HG 441

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YV+ S + A+  RW ++ +VRKLM++KGV K PGCSSIEID + HEFFAGD SHP ++
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +    +D + E+LK  GY P+ S    V+  ++ K +SLR HSE+LAI+ G+LN  PG  
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+ KNLRVC DCH + KL+S +FN  II+RD  RFHHF+DG CSC DYW
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/580 (40%), Positives = 359/580 (61%), Gaps = 17/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA----DLDYAFRVFYQIEN 95
           +++C S+ +L QI A A+++ +    + +   +++I+F + +     + YA  +F  +  
Sbjct: 36  ISKCNSLRELMQIQAYAIKSHI----EDVSFVAKLINFCTESPTESSMSYARHLFEAMSE 91

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+   +N++ R  +R  +   +   LF  ++E G +LPD +TFP  LKACA   A  +G+
Sbjct: 92  PDIVIFNSMARGYSRFTNPL-EVFSLFVEILEDG-ILPDNYTFPSLLKACAVAKALEEGR 149

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H    K GL  +VY+  +LI+ Y  C  +D A  VFD ++E  +V +N MI  + +  
Sbjct: 150 QLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRN 209

Query: 216 EFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + AL LFR MQ  + +P+  T  S+ S+CA L +L LG W H Y  +H   S    V 
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKH---SFCKYVK 266

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           VN +LIDM+ KCGSLD A  +FE M  +D  +W+++I+ +A HG+AE ++  F+R+   E
Sbjct: 267 VNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR-SE 325

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           +  P+ ITF+G+L+AC+H G V EGR YF  M++++ I P ++HYG +VDLL+RAGN+++
Sbjct: 326 NVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLED 385

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   +  +P+ P  ++WR LL A C  H ++ L+E+V++++ E +     G YV+LS +Y
Sbjct: 386 AYEFIDKLPISPTPMLWRILL-AACSSHNNLDLAEKVSERIFELDDSH-GGDYVILSNLY 443

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A  ++W  V  +RK+M D+   K PGCSSIE++ + HEFF+GD     T +++  LD + 
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           ++LK  GY PD S     +  D  K+ +LR HSE+LAI  G+LN  PG  IRV KNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +DCH   KLIS IF  ++++RD  RFHHF+DG CSC D+W
Sbjct: 564 RDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/552 (43%), Positives = 341/552 (61%), Gaps = 9/552 (1%)

Query: 65  HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           H+ ++ Y+ +I  +AS   ++ A ++F +I   +  +WN +I   A + + K +A+ LF+
Sbjct: 166 HRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNK-EALDLFK 224

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            M++  NV PD+ T    + ACA   +   G+Q H+ I   GL S++ I N+LI  Y+ C
Sbjct: 225 EMMKT-NVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKC 283

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSIT 242
           G ++ A  +F  +  + ++SWN MI  +     +  AL LF+ M    E P+  T  SI 
Sbjct: 284 GEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSIL 343

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            ACA L  +  G W H YI +     +     +  SLIDMY KCG ++ A QVF SM  R
Sbjct: 344 PACAQLGAIDFGRWIHVYIDKRIK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHR 402

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            L++ N++I GFA+HGRA AA   F R+  +    P+ ITFVG+LSAC+H GM+  GR  
Sbjct: 403 TLSACNAMIFGFAMHGRANAAFDIFSRMR-KNGIEPDDITFVGLLSACSHSGMLDLGRRI 461

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M   Y ITP LEHYGC++DLL   G   EA  +++ M M+PD VIW SLL AC K H
Sbjct: 462 FRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKAC-KMH 520

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            +V L E  A+++I+ E     G YVLLS +YA+A RWN+V  +R L+ DKG+ K PGCS
Sbjct: 521 GNVELGESFAQKLIKIEPE-NPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCS 579

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
           SIEID + HEF  GD  HP+ ++IYG L+ ++  L+  G+ PD S+     E ++ KQ +
Sbjct: 580 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEME-EEFKQGA 638

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           LR HSE+LAIA G+++ KPG  + + KNLRVC++CHE TKLIS+I+  EII RDR RFHH
Sbjct: 639 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 698

Query: 603 FKDGSCSCMDYW 614
           F+DG CSC DYW
Sbjct: 699 FRDGVCSCNDYW 710



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 210/409 (51%), Gaps = 49/409 (11%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA----SFADLDYAF 87
           NH SL S L  CK++  L+ IHAQ ++T L   H T    SR++ F     +F  L YA 
Sbjct: 2   NHPSL-SLLHNCKTLQSLRIIHAQMIKTGL---HNTNYALSRLLEFCILSPNFDGLPYAI 57

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I+ PN   WNT+ R  A S D    AI L+  MI  G +LP+ +TFPF LK+CA 
Sbjct: 58  SVFETIQEPNLLIWNTMFRGHALSSDP-VSAIKLYVCMISLG-LLPNSYTFPFLLKSCAK 115

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF---------------------------- 179
           L    +G+Q H H+ K G   D+Y++ SLI                              
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175

Query: 180 ---YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDG 235
              YAS G+++ A K+FD +  + +VSWN +I  +   G    AL LF+  M+   +PD 
Sbjct: 176 ITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDE 235

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            T  ++ SACA   ++ LG   H++I    DH L +++ + N+LID+Y KCG ++ A  +
Sbjct: 236 STMVTVVSACAQSGSIQLGRQVHSWI---DDHGLGSNLKIVNALIDLYSKCGEVETACGL 292

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+ +  +D+ SWN++I G+      + AL  F  + +    +PN +T + +L AC   G 
Sbjct: 293 FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEM-LRSGENPNDVTMLSILPACAQLGA 351

Query: 356 VSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           +  GR +  V I++    +T        L+D+ A+ G+I+ A  + ++M
Sbjct: 352 IDFGR-WIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/570 (42%), Positives = 342/570 (60%), Gaps = 45/570 (7%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +AS   LDY+  +F + +NP+ F W  +I   A       QA+  + +M+ QG V P+  
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR-GLHEQALNFYAQMLTQG-VEPNAF 76

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   LK C        GK  H+   K G  SD+Y+   L+  YA  G +  A ++FD M
Sbjct: 77  TFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132

Query: 197 LERSLVS-------------------------------WNVMIDAFVQFGEFDSALKLFR 225
            E+SLVS                               WNVMID + Q G  + AL LFR
Sbjct: 133 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 192

Query: 226 RM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           RM +   +P+  T  S+ SAC  L  L  G W H+YI    ++ +  +V V  +L+DMY 
Sbjct: 193 RMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE---NNGIQFNVHVGTALVDMYS 249

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCGSL+ AR VF+ +  +D+ +WNS+I+G+A+ G ++ AL+ F  +       P +ITF+
Sbjct: 250 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMC-RMGLHPTNITFI 308

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           G+LSAC H G V+EG D F+ M +EY I P +EHYGC+V+LL RAG++++A  LV NM +
Sbjct: 309 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 368

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +PD V+W +LL AC + H  + L E++ + +++ +    SG Y+LLS +YA+   W+ V 
Sbjct: 369 EPDPVLWGTLLGAC-RLHGKIALGEKIVELLVD-QNLANSGTYILLSNIYAAVGNWDGVA 426

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            +R +M D GV KEPGCSSIE++   HEF AG  +HP+ K+IY  L+ I+  LKS GYTP
Sbjct: 427 RLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTP 486

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
             +   + D  +  K+ SL +HSE+LAIA G++N +PG  I++ KNLRVC DCHEVTKLI
Sbjct: 487 Q-TDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLI 545

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S+I   +I+VRDR RFHHF +GSCSC DYW
Sbjct: 546 SKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/580 (43%), Positives = 358/580 (61%), Gaps = 24/580 (4%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF--ADLDYAFRVFYQI--ENP-NSF 99
           S++  KQIHA+ALR  +P  H  LL    + H A+     L YA  V  ++    P + F
Sbjct: 27  SLAAAKQIHARALRAGVPTSHP-LLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPF 85

Query: 100 TWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
             NT++R  A S   +P+ A+ L +R +     LPD HT+P  ++ACA L A  +G+  H
Sbjct: 86  PLNTVLRIAAGS--PRPRVALELHRRRL----ALPDTHTYPPLIQACARLLALREGECLH 139

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGE 216
           A   K G V+ V++ NSL+H Y +CG  + A+KVFD M    R+LVSWN M+++F   G 
Sbjct: 140 AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR 199

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            +  L +F  M  + F PDG+T  S+ +ACA    L+LG   H Y+ +     LV +  V
Sbjct: 200 PNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKV---GLVENSHV 256

Query: 276 NNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +N+LID+Y KCGS++ AR++FE M   R + SW S+I+G A +G  + AL+ F  L+  E
Sbjct: 257 SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFS-LMERE 315

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P  IT VGVL AC+H G+V +G  YFD M  +Y I+P +EH GC+VDLL RAG ++E
Sbjct: 316 KLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEE 375

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   +  MP++P+AV+WR+LL +C   H  + L +   ++++E + G  SG YVLLS +Y
Sbjct: 376 AYDYIITMPLEPNAVVWRTLLGSCAM-HKKLELGKVAWERLVELDPG-HSGDYVLLSNLY 433

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A+   W DV ++RK M    V K PG S +E+    +EF  GD SHP+++QIY  L  I 
Sbjct: 434 AAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIA 493

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           E+L+  GY P  S   + D  ++ K+++L  HSERLAIA  +L   PG+PIR+ KNLR+C
Sbjct: 494 ERLRREGYIPRTSNV-LADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMC 552

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH    LIS++++ EIIVRDR+RFHHF+ G+CSC DYW
Sbjct: 553 GDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/611 (39%), Positives = 353/611 (57%), Gaps = 43/611 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L    T   ++   +Q+H   L+  L  Q+   +  + +  +     LD A  VF     
Sbjct: 145 LFKGFTRDIALEYGRQLHGHVLKHGL--QYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 202

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            +  TWN +I A  + V    ++  LF  M E   VLP   T    L AC+ L     GK
Sbjct: 203 ADVITWNMIISAYNK-VGKFEESRRLFLVM-EDKQVLPTTVTLVLVLSACSKLKDLRTGK 260

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---------------------------- 187
           + H+++    + S++ + N++I  YA CG +D                            
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320

Query: 188 ---LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
              +A   FD M E+  VSW  MID +++   F  AL+LFR MQ    +PD +T  S+ +
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L LG W   YI R+    +  D+ V N+LIDMY KCG +D A  +F  M +RD
Sbjct: 381 ACAHLGALELGEWIRTYIDRN---KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 437

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             +W ++I+G A++G  E AL  F  ++ + S  P+ IT++GVLSAC H G+V +GR YF
Sbjct: 438 KFTWTAMIVGLAVNGHGEKALDMFSNML-KASILPDEITYIGVLSACTHTGLVDKGRKYF 496

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M +++ I P + HYGCLVDLLARAG + EA  ++ NMP+K ++++W +LL A C+ + 
Sbjct: 497 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALL-AGCRVYR 555

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
              ++E V KQ++E E      VYVLL  +YA+ +RWND+  +R++M DKG+ K PGCS 
Sbjct: 556 ESDMAEMVVKQILELEPD-NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSL 614

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           IE++G  HEF AGD SHPQTK I   LD + + LK  GY+PD S+   +D  ++ K++S+
Sbjct: 615 IEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEV-FLDIAEEDKENSV 673

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G++N  PG+ IR+ KNLR+C DCH + KL+S+++N E+IVRDR RFHHF
Sbjct: 674 FRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHF 733

Query: 604 KDGSCSCMDYW 614
           K G CSC DYW
Sbjct: 734 KHGLCSCKDYW 744



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 215/416 (51%), Gaps = 48/416 (11%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFYQ 92
           L+S L  C+SM QL+Q+H QA++  L   +   ++ +R++ F     + D  YA R+F +
Sbjct: 42  LISLLETCESMDQLQQVHCQAIKKGL---NANPVLQNRVMTFCCTHEYGDFQYARRLFDE 98

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I  PN F WNT+IR  +R +D     + L+  M+ +G V PD++TFPF  K      A  
Sbjct: 99  IPEPNLFIWNTMIRGYSR-LDFPQLGVSLYLEMLRRG-VKPDRYTFPFLFKGFTRDIALE 156

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H H+ K GL  +V+++ +L+  Y  CG LD A  VFD   +  +++WN++I A+ 
Sbjct: 157 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 216

Query: 213 QFGEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + G+F+ + +LF  M   Q+L  P   T   + SAC+ L  L  G   H+Y+ ++C   +
Sbjct: 217 KVGKFEESRRLFLVMEDKQVL--PTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNC--KV 271

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +++++ N++IDMY  CG +D A  +F SM  RD+ SW +I+ GF   G  + A  YFD+
Sbjct: 272 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 331

Query: 330 LVVEESFS------------------------------PNSITFVGVLSACNHRGMVSEG 359
           +  ++  S                              P+  T V VL+AC H G +  G
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            ++    I+   I   L     L+D+  + G++D+A  +   M  + D   W +++
Sbjct: 392 -EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTAMI 445



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 141/292 (48%), Gaps = 20/292 (6%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS--CGHLDLAN 190
           P  H     L+ C    +  Q +Q H    K+GL ++  + N ++ F  +   G    A 
Sbjct: 37  PPTHPLISLLETCE---SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYAR 93

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLA 249
           ++FD + E +L  WN MI  + +       + L+  M +   +PD YTF  +        
Sbjct: 94  RLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDI 153

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G   H ++L+H    L  +V V+ +L+ MY  CG LD AR VF+  PK D+ +WN 
Sbjct: 154 ALEYGRQLHGHVLKH---GLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 210

Query: 310 IILGFALHGRAEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           II  +   G+ E + + F  LV+E+    P ++T V VLSAC+    +  G+     + N
Sbjct: 211 IISAYNKVGKFEESRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268

Query: 369 ---EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              E N+  VLE+   ++D+ A  G +D AL +  +M  + D + W +++  
Sbjct: 269 CKVESNL--VLEN--AMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSG 315



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH- 76
           HS   N + E +    ++++    +C  M         AL       ++ ++ ++ I+  
Sbjct: 263 HSYVKNCKVESNLVLENAMIDMYADCGEMDS-------ALGIFRSMNNRDIISWTTIVSG 315

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F +  ++D A   F ++   +  +W  +I    RS   K +A+ LF+ M +  NV PD+ 
Sbjct: 316 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK-EALELFRNM-QATNVKPDEF 373

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L ACA+L A   G+    +I +  + +D+++ N+LI  Y  CG +D A  +F  M
Sbjct: 374 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 433

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
            +R   +W  MI      G  + AL +F  M +    PD  T+  + SAC     +  G 
Sbjct: 434 SQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKG- 492

Query: 256 WAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILG 313
               Y LR    H +  ++     L+D+  + G L  A +V E+MP K +   W +++ G
Sbjct: 493 --RKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAG 550

Query: 314 FALHGRAEAA 323
             ++  ++ A
Sbjct: 551 CRVYRESDMA 560


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/580 (40%), Positives = 360/580 (62%), Gaps = 17/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDYAFRVFYQIEN 95
           +++C S  +L QI A A+++      + +   +++I+F     + + + YA  +F  +  
Sbjct: 38  ISKCNSERELMQIQAYAIKS----HQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSE 93

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+   +N++ R  +RS +   +   LF  ++E  ++LPD +TFP  LKACA   A  +G+
Sbjct: 94  PDIVIFNSIARGYSRSTNPL-EVFNLFVEILED-DLLPDNYTFPSLLKACAVAKALEEGR 151

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H    K G+  +VY+  +LI+ Y  C  +D A  VFD ++E  +V +N MI  + +  
Sbjct: 152 QLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRN 211

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + AL LFR MQ    +P+  T  S+ S+CA L +L LG W H Y  +H        V 
Sbjct: 212 RPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKH---GFCKYVK 268

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           VN +LIDM+ KCGSLD A  +FE+M  +D  +W+++I+ +A HG+AE ++  F+R+   E
Sbjct: 269 VNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMR-SE 327

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           +  P+ ITF+G+L+AC+H G+V EGR+YF  M++E+ I P ++HYG +VDLL RAG++++
Sbjct: 328 NVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLED 387

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   +  +P+ P  ++WR LL A C  H ++ L+E+V+++++E +     G YV+LS +Y
Sbjct: 388 AYEFIDKLPISPTPMLWRILL-AACSSHNNLELAEKVSERILELDDSH-GGDYVILSNLY 445

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A  ++W  V  +RK+M D+   K PGCSSIE++ + HEFF+GD     T +++  LD + 
Sbjct: 446 ARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 505

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           ++LK  GY PD S     D  D  K+ +LR HSE+LAIA G+LN  PG  IRV KNLRVC
Sbjct: 506 KELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVC 565

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +DCH   KLIS IF  ++++RD  RFHHF+DG CSC D+W
Sbjct: 566 RDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/611 (39%), Positives = 353/611 (57%), Gaps = 43/611 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L    T   ++   +Q+H   L+  L  Q+   +  + +  +     LD A  VF     
Sbjct: 124 LFKGFTRDIALEYGRQLHGHVLKHGL--QYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            +  TWN +I A  + V    ++  LF  M E   VLP   T    L AC+ L     GK
Sbjct: 182 ADVITWNMIISAYNK-VGKFEESRRLFLVM-EDKQVLPTTVTLVLVLSACSKLKDLRTGK 239

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---------------------------- 187
           + H+++    + S++ + N++I  YA CG +D                            
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299

Query: 188 ---LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
              +A   FD M E+  VSW  MID +++   F  AL+LFR MQ    +PD +T  S+ +
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L LG W   YI R+    +  D+ V N+LIDMY KCG +D A  +F  M +RD
Sbjct: 360 ACAHLGALELGEWIRTYIDRN---KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 416

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             +W ++I+G A++G  E AL  F  ++ + S  P+ IT++GVLSAC H G+V +GR YF
Sbjct: 417 KFTWTAMIVGLAVNGHGEKALDMFSNML-KASILPDEITYIGVLSACTHTGLVDKGRKYF 475

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M +++ I P + HYGCLVDLLARAG + EA  ++ NMP+K ++++W +LL A C+ + 
Sbjct: 476 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALL-AGCRVYR 534

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
              ++E V KQ++E E      VYVLL  +YA+ +RWND+  +R++M DKG+ K PGCS 
Sbjct: 535 ESDMAEMVVKQILELEPD-NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSL 593

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           IE++G  HEF AGD SHPQTK I   LD + + LK  GY+PD S+   +D  ++ K++S+
Sbjct: 594 IEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEV-FLDIAEEDKENSV 652

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G++N  PG+ IR+ KNLR+C DCH + KL+S+++N E+IVRDR RFHHF
Sbjct: 653 FRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHF 712

Query: 604 KDGSCSCMDYW 614
           K G CSC DYW
Sbjct: 713 KHGLCSCKDYW 723



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 215/416 (51%), Gaps = 48/416 (11%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFYQ 92
           L+S L  C+SM QL+Q+H QA++  L   +   ++ +R++ F     + D  YA R+F +
Sbjct: 21  LISLLETCESMDQLQQVHCQAIKKGL---NANPVLQNRVMTFCCTHEYGDFQYARRLFDE 77

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I  PN F WNT+IR  +R +D     + L+  M+ +G V PD++TFPF  K      A  
Sbjct: 78  IPEPNLFIWNTMIRGYSR-LDFPQLGVSLYLEMLRRG-VKPDRYTFPFLFKGFTRDIALE 135

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H H+ K GL  +V+++ +L+  Y  CG LD A  VFD   +  +++WN++I A+ 
Sbjct: 136 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 195

Query: 213 QFGEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + G+F+ + +LF  M   Q+L  P   T   + SAC+ L  L  G   H+Y+ ++C   +
Sbjct: 196 KVGKFEESRRLFLVMEDKQVL--PTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNC--KV 250

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +++++ N++IDMY  CG +D A  +F SM  RD+ SW +I+ GF   G  + A  YFD+
Sbjct: 251 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 310

Query: 330 LVVEESFS------------------------------PNSITFVGVLSACNHRGMVSEG 359
           +  ++  S                              P+  T V VL+AC H G +  G
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            ++    I+   I   L     L+D+  + G++D+A  +   M  + D   W +++
Sbjct: 371 -EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTAMI 424



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 141/290 (48%), Gaps = 20/290 (6%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS--CGHLDLAN 190
           P  H     L+ C    +  Q +Q H    K+GL ++  + N ++ F  +   G    A 
Sbjct: 16  PPTHPLISLLETCE---SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYAR 72

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLA 249
           ++FD + E +L  WN MI  + +       + L+  M +   +PD YTF  +        
Sbjct: 73  RLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDI 132

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G   H ++L+H    L  +V V+ +L+ MY  CG LD AR VF+  PK D+ +WN 
Sbjct: 133 ALEYGRQLHGHVLKH---GLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 189

Query: 310 IILGFALHGRAEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           II  +   G+ E + + F  LV+E+    P ++T V VLSAC+    +  G+     + N
Sbjct: 190 IISAYNKVGKFEESRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247

Query: 369 ---EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              E N+  VLE+   ++D+ A  G +D AL +  +M  + D + W +++
Sbjct: 248 CKVESNL--VLEN--AMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIV 292



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH- 76
           HS   N + E +    ++++    +C  M         AL       ++ ++ ++ I+  
Sbjct: 242 HSYVKNCKVESNLVLENAMIDMYADCGEMDS-------ALGIFRSMNNRDIISWTTIVSG 294

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F +  ++D A   F ++   +  +W  +I    RS   K +A+ LF+ M +  NV PD+ 
Sbjct: 295 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK-EALELFRNM-QATNVKPDEF 352

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L ACA+L A   G+    +I +  + +D+++ N+LI  Y  CG +D A  +F  M
Sbjct: 353 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 412

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
            +R   +W  MI      G  + AL +F  M +    PD  T+  + SAC     +  G 
Sbjct: 413 SQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKG- 471

Query: 256 WAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILG 313
               Y LR    H +  ++     L+D+  + G L  A +V E+MP K +   W +++ G
Sbjct: 472 --RKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAG 529

Query: 314 FALHGRAEAA 323
             ++  ++ A
Sbjct: 530 CRVYRESDMA 539


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/600 (42%), Positives = 351/600 (58%), Gaps = 25/600 (4%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
            N +  +L  L +C +++ LKQ+HAQ L T L  Q   L   S +++ +S     YAF +
Sbjct: 2   LNLNHPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYL---SHLLNTSSKFASTYAFTI 58

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  I NP  F +NTLI +     D    A  L+  ++    + P+  TFP   KACA   
Sbjct: 59  FNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHP 118

Query: 150 AFSQGKQAHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               G   HAH+ K      D ++ NSL++FYA  G L ++  +FD + E  L +WN M+
Sbjct: 119 WLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTML 178

Query: 209 DAFVQ----------FGEFD---SALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG 254
            A+ Q          F + D    AL LF  MQ+   +P+  T  ++ SAC+ L  LS G
Sbjct: 179 AAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQG 238

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
            WAH Y+LR+   +L  +  V  +L+DMY KCG L++A Q+F+ +  RD   +N++I GF
Sbjct: 239 AWAHGYVLRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGF 295

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A+HG    AL+ +  + +E+   P+  T V  + AC+H G+V EG + F+ M   + + P
Sbjct: 296 AVHGHGNQALELYRNMKLED-LVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEP 354

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            LEHYGCL+DLL RAG + EA   + +MPMKP+A++WRSLL A  K H ++ + E   K 
Sbjct: 355 KLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAA-KLHGNLEMGEAALKH 413

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           +IE E    SG YVLLS +YAS  RWNDV  VR LM D GV K PG S +EI+G  HEF 
Sbjct: 414 LIELEPET-SGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFL 472

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
            GD +HP +K+IY  +  I+ +L   G+ P  S+  + D  ++ K+  L  HSERLAIA 
Sbjct: 473 TGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEV-LFDVEEEDKEDFLSYHSERLAIAF 531

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            ++     MPIR+ KNLRVC DCH +TKLIS  +  +IIVRDR RFHHFKDGSCSC+DYW
Sbjct: 532 ALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/578 (42%), Positives = 347/578 (60%), Gaps = 26/578 (4%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY---QIENP---NSFTWNTL 104
           QIH+  L+  L   H  L++       + F  + YA  V +   Q   P   ++F +NTL
Sbjct: 140 QIHSLILKLGL--HHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTL 197

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           IRA A++  +KP A+  +  M     V P+K TFPF LKACA +     G   HA + K 
Sbjct: 198 IRAFAQTTHSKPHALRFYNTMRRHA-VSPNKFTFPFVLKACAGMMRLELGGAVHASMVKF 256

Query: 165 GLVSDVYINNSLIHFYASC------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
           G   D ++ N+L+H Y  C      G +  A KVFD    +  V+W+ MI  + + G   
Sbjct: 257 GFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNSA 315

Query: 219 SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            A+ LFR MQ+    PD  T  S+ SACA L  L LG W  +YI R    +++  V + N
Sbjct: 316 RAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERK---NIMRSVELCN 372

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +LIDM+ KCG +D A +VF  M  R + SW S+I+G A+HGR   A+  FD ++ E+   
Sbjct: 373 ALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMM-EQGVD 431

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P+ + F+GVLSAC+H G+V +G  YF+ M N ++I P +EHYGC+VD+L+RAG ++EAL 
Sbjct: 432 PDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALE 491

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
            V  MP++P+ VIWRS++ AC  +   + L E VAK++I  E    S  YVLLS +YA  
Sbjct: 492 FVRAMPVEPNQVIWRSIVTACHAR-GELKLGESVAKELIRREPSHESN-YVLLSNIYAKL 549

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            RW     VR++M  KG+ K PG + IE++   +EF AGD SH Q K+IY  ++ +  ++
Sbjct: 550 LRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREI 609

Query: 518 KSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           K  GY P  SQ  + +DE D  K+ +L  HSE+LAIA  +L+  PG PIR+ KNLRVC+D
Sbjct: 610 KRAGYVPTTSQVLLDIDEED--KEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCED 667

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH  TK IS+++N EI+VRDR RFHHFK+G CSC D+W
Sbjct: 668 CHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/589 (41%), Positives = 352/589 (59%), Gaps = 19/589 (3%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           +  ++  +L  C  M  L   + I A A++  L        + S +IH +AS  D+  A 
Sbjct: 118 DQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADR---FVLSSLIHMYASCRDVAAAQ 174

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            +F  +E      WN +I A  ++ +   + + +F+ M+E G V  D+ T    + AC  
Sbjct: 175 LLFDAVEENGVVMWNAIITAYMKNGNWM-EVVEMFKGMLEVG-VAFDEITLVSVVTACGR 232

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           +     GK    ++ ++GLV +  +  +LI  YA CG L  A ++FD M  R +V+W+ M
Sbjct: 233 IGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAM 292

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + Q  +   AL LF  MQ+   EP+  T  S+ SACA L  L  G W H+YI R   
Sbjct: 293 ISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-- 350

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L   +++  +L+D Y KCG +D A + FESMP ++  +W ++I G A +GR   AL+ 
Sbjct: 351 -RLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALEL 409

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +  + S  P  +TF+GVL AC+H  +V EGR +FD M  +Y I P  EHYGC+VDLL
Sbjct: 410 FSSMR-KASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLL 468

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG IDEA   +  MP++P+AVIWR+LL +C   H +V + EE  KQ++ S     SG 
Sbjct: 469 GRAGLIDEAYQFIRTMPIEPNAVIWRALLSSC-AVHKNVEIGEEALKQIV-SLNPSHSGD 526

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS +YAS  +W +  ++RK M D+G+ K PGCS IE+DG+  EFFA D+ HPQ K+I
Sbjct: 527 YILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEI 586

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           Y  ++ + +++K  GY P+ +   + VDE +  K+ S+  HSE+LAIA G++ L PG  I
Sbjct: 587 YQKVEEMIDRIKMAGYIPNTADVRLEVDEHE--KEVSVSHHSEKLAIAFGLMKLDPGATI 644

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+ KNLRVC DCH  TKLIS+++N EI+VRDR RFHHFKDG+CSC DYW
Sbjct: 645 RLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 196/375 (52%), Gaps = 20/375 (5%)

Query: 49  LKQIHAQALR----TALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT--WN 102
           L Q+HA  ++    T  P+   +LL  +     AS   L YA  +F     P   T  +N
Sbjct: 32  LPQLHAALIKSGELTGSPKCFHSLLEAAA----ASPTLLPYAVSLFRLGPRPPLSTPCYN 87

Query: 103 TLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
            L+RA   +    P+ A+ LF  M++  +V PD+HT   ALK+C+ +     G+   A+ 
Sbjct: 88  VLMRALLHA--GHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            KRGL++D ++ +SLIH YASC  +  A  +FD + E  +V WN +I A+++ G +   +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 222 KLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           ++F+ M ++    D  T  S+ +AC  +    LG W   Y+    +  LV +  +  +LI
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVD---EKGLVRNRNLMTALI 262

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG L  AR++F+ M  RD+ +W+++I G+    +   AL  F  + + E   PN 
Sbjct: 263 DMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAE-VEPND 321

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +T V VLSAC   G +  G+ +    I    ++  +     LVD  A+ G ID+A+    
Sbjct: 322 VTMVSVLSACAVLGALETGK-WVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFE 380

Query: 401 NMPMKPDAVIWRSLL 415
           +MP+K ++  W +L+
Sbjct: 381 SMPVK-NSWTWTALI 394


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 357/580 (61%), Gaps = 17/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA----DLDYAFRVFYQIEN 95
           +++C S+ +L QI A A+++ +    + +   +++I+F + +     + YA  +F  +  
Sbjct: 36  ISKCNSLRELMQIQAYAIKSHI----EDVSFVAKLINFCTESPTESSMSYARHLFEAMSE 91

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+   +N++ R  +R  +   +   LF  ++E G +LPD +TFP  LKACA   A  +G+
Sbjct: 92  PDIVIFNSMARGYSRFTNPL-EVFSLFVEILEDG-ILPDNYTFPSLLKACAVAKALEEGR 149

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H    K GL  +VY+  +LI+ Y  C  +D A  VFD ++E  +V +N MI  + +  
Sbjct: 150 QLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRN 209

Query: 216 EFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + AL LFR MQ  + +P+  T  S+ S+CA L +L LG W H Y  +H   S    V 
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKH---SFCKYVK 266

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           VN +LIDM+ KCGSLD A  +FE M  +D  +W+++I+ +A HG+AE ++  F+R+   E
Sbjct: 267 VNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR-SE 325

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           +  P+ ITF+G+L+AC+H G V EGR YF  M++++ I P ++HYG +VDLL+ AGN+++
Sbjct: 326 NVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLED 385

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   +  +P+ P  ++WR LL A C  H ++ L+E+V++++ E +     G YV+LS +Y
Sbjct: 386 AYEFIDKLPISPTPMLWRILL-AACSSHNNLDLAEKVSERIFELDDSH-GGDYVILSNLY 443

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A  ++W  V  +RK+M D+   K PGCSSIE++ + HEFF+GD     T +++  LD + 
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           ++LK  GY PD S     +  D  K+ +LR HSE+LAI  G+LN  PG  IRV KNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +DCH   KLIS IF  +++ RD  RFHHF+DG CSC D+W
Sbjct: 564 RDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/617 (39%), Positives = 360/617 (58%), Gaps = 41/617 (6%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRV 89
           +N    +S L  C    +LKQIHA+ L+T L Q    +  +      ++ +D L YA  V
Sbjct: 12  HNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIV 71

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F   + P++F WN +IR  + S D   ++++L+QRM+   +   + +TFP  LKAC+ L 
Sbjct: 72  FDGFDRPDTFLWNLMIRGFSCS-DEPERSLLLYQRML-CSSAPHNAYTFPSLLKACSNLS 129

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           AF +  Q HA I K G  +DVY  NSLI+ YA  G+  LA+ +FD + E   VSWN +I 
Sbjct: 130 AFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIK 189

Query: 210 AFVQFGEFDSALKLFRRM-------------------------QIL-------FEPDGYT 237
            +V+ G+ D AL LFR+M                         Q+         EPD  +
Sbjct: 190 GYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVS 249

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             +  SACA L  L  G W H+Y+ +     +  D ++   LIDMY KCG ++ A +VF+
Sbjct: 250 LANALSACAQLGALEQGKWIHSYLNKT---RIRMDSVLGCVLIDMYAKCGEMEEALEVFK 306

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
           ++ K+ + +W ++I G+A HG    A+  F  +  +    PN ITF  VL+AC++ G+V 
Sbjct: 307 NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ-KMGIKPNVITFTAVLTACSYTGLVE 365

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           EG+  F  M  +YN+ P +EHYGC+VDLL RAG +DEA   +  MP+KP+AVIW +LL A
Sbjct: 366 EGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
           C + H ++ L EE+ + +I  +     G YV  + ++A  ++W+     R+LM ++GV K
Sbjct: 426 C-RIHKNIELGEEIGEILIAIDP-YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PGCS+I ++G  HEF AGD SHP+ ++I     ++  KL+  GY P+  +  +    DD
Sbjct: 484 VPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDD 543

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            +++ +  HSE+LAI  G++  KPG  IR+ KNLRVCKDCH+VTKLIS+I+  +I++RDR
Sbjct: 544 EREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDR 603

Query: 598 ARFHHFKDGSCSCMDYW 614
            RFHHF+DG CSC DYW
Sbjct: 604 TRFHHFRDGKCSCGDYW 620


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/612 (41%), Positives = 349/612 (57%), Gaps = 49/612 (8%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFYQIENPNSFT 100
           +C+SMSQL+Q H+Q +R  L   +  +         AS +D L YA ++F  I  P++F 
Sbjct: 31  KCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFL 90

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           +NT+I+    S      +I+L    + Q +VLP+  TFP  L AC  +     G Q HAH
Sbjct: 91  YNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI---QHGMQIHAH 147

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN------------------------- 195
           +FK G  +     NSLIH Y +   L+ A +VF                           
Sbjct: 148 LFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEA 207

Query: 196 ------MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP--DGYTFQSITSACAG 247
                 M +++  SWN M+ A+VQ   F  A  LF RM+       D +   ++ SAC G
Sbjct: 208 FTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTG 267

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLT 305
           L  L  G W H YI R+    +  D  +  +++DMYCKCG L+ A QVF S+P   R ++
Sbjct: 268 LGALDQGKWIHEYIKRN---GIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWIS 324

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN +I G A+HG  EAA++ F  +   +  +P+ ITF+ +L+AC H G+V EGR+YF  
Sbjct: 325 SWNCMIGGLAMHGNGEAAIQLFKEME-RQRVAPDDITFLNLLTACAHSGLVEEGRNYFSY 383

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           MI  Y I P +EH+GC+VDLL RAG + EA  L+  MP+ PD  +  +LL AC KKH ++
Sbjct: 384 MIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGAC-KKHRNI 442

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L EE+ ++VIE E    SG YVLL+ +YA+A +W D   VRKLM D+GV K PG S IE
Sbjct: 443 ELGEEIGRRVIELEPN-NSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIE 501

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS---QAAMVDELDDGKQSS 542
           + G  HEF AG+ +HPQ K+++  +  + E LKS GY  D +        DE +DG ++ 
Sbjct: 502 LQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDG-ENP 560

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L  HSE+LAIA G+   KPG  +R+ KNLR+C+DCH   KLIS +F+ EIIVRDR RFH 
Sbjct: 561 LYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHR 620

Query: 603 FKDGSCSCMDYW 614
           FK G CSC DYW
Sbjct: 621 FKMGQCSCQDYW 632


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/609 (40%), Positives = 353/609 (57%), Gaps = 31/609 (5%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           P  Q  S S+   N    S      L+S + +C ++ +LKQI A  ++T    Q+ T +I
Sbjct: 4   PILQLTSFSLTKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNY--QNNTNVI 61

Query: 71  YSRIIHFASF----ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
            ++ I+F +     A +++A ++F QI  PN   +NT+ R  AR  D          RMI
Sbjct: 62  -TKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDP--------LRMI 112

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
                      F   L+  + + A ++GKQ H    K G+  ++Y+  +LI+ Y +CG +
Sbjct: 113 TH---------FRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDI 163

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSAC 245
           D + +VFD + E  +V++N +I +  +    + AL LFR +Q I  +P   T   + S+C
Sbjct: 164 DASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSC 223

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L +L LG W H Y+ ++        V VN +LIDMY KCGSLD A  VF  MPKRD  
Sbjct: 224 ALLGSLDLGRWMHEYVKKY---GFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQ 280

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +W++II+ +A HG    A+   + +  +E   P+ ITF+G+L AC+H G+V EG +YF  
Sbjct: 281 AWSAIIVAYATHGDGFQAISMLNEMK-KEKVQPDEITFLGILYACSHNGLVEEGFEYFHG 339

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M NEY I P ++HYGC+VDLL RAG +DEA   +  +P+KP  ++WR+LL AC   H +V
Sbjct: 340 MTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSAC-STHGNV 398

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            + + V +++ E +     G YV+ S + A   +W+DV  +RK M DKG  K PGCSSIE
Sbjct: 399 EMGKRVIERIFELDDS-HGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIE 457

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           ++ + HEFFAG+  H  +  ++  LD + ++LKS GY PD S     D  D+ K+  LR 
Sbjct: 458 VNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRY 517

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAI  G+LN  PG  IRV KNLRVC DCH   K IS IF  +II+RD  RFHHFKD
Sbjct: 518 HSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKD 577

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 578 GKCSCGDYW 586


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/580 (42%), Positives = 353/580 (60%), Gaps = 16/580 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL++   +       +++  Q+        H+ ++ Y+ +I  +AS   +  A ++F 
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQS-------SHRDVVSYTALIKGYASNGYIXSAQKMFD 193

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN LI   A + + K +A+ LF+ M++  NV PD+ T    L ACA   + 
Sbjct: 194 EIPVKDVVSWNALISGYAETGNYK-EALELFKEMMKT-NVKPDESTMVTVLSACAQSASI 251

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI  Y  CG ++ A+ +F+ +  + ++SWN +I  +
Sbjct: 252 ELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGY 311

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     + 
Sbjct: 312 THMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLK-GVS 370

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               +  SLIDMY KCG ++ A+QVF+SM  R L+SWN++I GFA+HGRA  A   F R+
Sbjct: 371 NPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRM 430

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             ++   P+ ITFVG+LSAC+H GM+  GR  F  M  +Y ITP LEHYGC++DLL  +G
Sbjct: 431 R-KDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSG 489

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  ++++M M PD VIW SLL AC K H +V L E  A+ +I+ E    SG YVLL
Sbjct: 490 LFKEAEEMINSMEMDPDGVIWCSLLKAC-KMHGNVELGESFAQNLIKIEPK-NSGSYVLL 547

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V   R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 548 SNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGML 607

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           LRVC++CHE TKLIS+I+  EII RDR RFHHF DG CSC
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 213/409 (52%), Gaps = 49/409 (11%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA----SFADLDYAF 87
           NH SL S L  CK++  L+ IHA+ ++T L   H T    S++I F+     F  L YA 
Sbjct: 2   NHPSL-SLLHNCKTLQSLRIIHAKMIKTGL---HNTNYALSKLIEFSVLSPHFDGLTYAI 57

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I+ PN   WNT+ R  A S D    A+ L+  MI  G ++P+ +TFPF LKACA 
Sbjct: 58  SVFDSIQEPNLLIWNTMFRGHALSSDP-VSALYLYVCMISLG-LVPNSYTFPFLLKACAK 115

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF---------------------------- 179
             AF +G+Q H H+ K G   D+Y++ SLI                              
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175

Query: 180 ---YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDG 235
              YAS G++  A K+FD +  + +VSWN +I  + + G +  AL+LF+  M+   +PD 
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDE 235

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            T  ++ SACA  A++ LG   H++I    DH   +++ + N+LID+Y KCG ++ A  +
Sbjct: 236 STMVTVLSACAQSASIELGRQVHSWI---DDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           FE +  +D+ SWN++I G+      + AL  F  + +    SPN +T + +L AC H G 
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNEVTMLSILPACAHLGA 351

Query: 356 VSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           +  GR +  V I++    ++        L+D+ A+ G+I+ A  +  +M
Sbjct: 352 IDIGR-WIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/596 (42%), Positives = 352/596 (59%), Gaps = 31/596 (5%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF------ASFADLDYAFRV 89
           LL  L +C ++  L Q+HA A+++ L Q H   +  +R++        A  A L YA +V
Sbjct: 34  LLPYLPQCTTLRALAQLHAAAVKSGL-QAHPAFV--TRLLTLCTDQGAAKPAQLSYARQV 90

Query: 90  FYQIENPNSFTW-NTLIRA---CARSVDAKP---QAIVLFQRMIEQGNVLPDKHTFPFAL 142
           F +I  P    W NTL+R    C+ +  A+P   +A  +F RM+E+G V PD +TF   L
Sbjct: 91  FDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEG-VAPDTYTFVSLL 149

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           KACA   A  +G+QAH    K G     Y+  +LI+ YA CG    A  +F  +    +V
Sbjct: 150 KACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVV 209

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           S+N MI A V+      AL LFR MQ    +    T  S+ SACA L  L LG W H Y+
Sbjct: 210 SYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYV 269

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            +    SLV    VN +LIDMY KCGSL+ A  VF+ M  RD  +W+ +I+ +A H    
Sbjct: 270 RKVQLDSLVK---VNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGR 326

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F+ +  ++   P+ +TF+GVL AC+H G+VSEG  YFD M  E+ + P ++HYGC
Sbjct: 327 EAISLFEEMK-KQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGC 384

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE---S 438
           + DLLAR+G +D A   +  +P+KP A++WR+LL AC  +     L ++V ++++E   S
Sbjct: 385 VADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSR-GDADLGKQVFERILELDDS 443

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
            GG     YV+ S + A+  RW ++  VRKLM +KGV K PGCSSIE+D   HEFFAGD 
Sbjct: 444 HGGD----YVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDG 499

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
            HP++      +D + E+LK  GY P+ S    V+  ++ K  SLR HSE+LAI+ G+LN
Sbjct: 500 RHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLN 559

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG  +RV KNLRVC DCH + KL+S +FN  II+RD  RFHHF+DG CSC DYW
Sbjct: 560 TSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/600 (39%), Positives = 353/600 (58%), Gaps = 45/600 (7%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIR 106
           +LKQ+HA  L+T  P     L   SR+    +F +   YA  +F  ++      WNT +R
Sbjct: 30  ELKQLHAHLLKTNSPLSSLPL---SRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLR 86

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           + A   D+   AI LF R+ E  ++ PD +T  F LKAC+ L     GK  H ++ K GL
Sbjct: 87  SFAEG-DSPADAISLFYRLREF-DISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGL 144

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            S++++ N ++H YA CG + +A KVFD M +R +++WN+MI   V+ G+ + A KLF  
Sbjct: 145 QSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAE 204

Query: 227 M-------------------------QILFE-------PDGYTFQSITSACAGLATLSLG 254
           M                          +  E       P+  T  ++  ACA +  L LG
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H +  R        ++ V N+LIDMY KCG L+ A ++F++M +R + SW+++I G 
Sbjct: 265 RRIHDFSNRS---GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGL 321

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HGRAE AL  F++++      PN++TF+G+L AC+H GMV +GR YF  M  +Y I P
Sbjct: 322 AAHGRAEDALALFNKMI-NTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +EHYGC+VDL +RAG + EA   + NMP+ P+ V+W +LL   CK H ++ L+EE  + 
Sbjct: 381 RIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG-CKVHKNIKLAEEATRH 439

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           + + +  +  G YV+LS +YA A RW DV  VRKLM D+GV K PG SSI ++G+ + F 
Sbjct: 440 LSKLD-PLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFV 498

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
           AGD +HPQT++I+   + + +++K +GY P+ S   ++D  +D K+  L  HSE+LA+  
Sbjct: 499 AGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTS-VVLLDMEEDQKEKFLYRHSEKLAVVF 557

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G++   PG  IR+ KNLRVC+DCH   K+IS +   EI+VRDR RFH FK+GSCSC DYW
Sbjct: 558 GLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/633 (39%), Positives = 358/633 (56%), Gaps = 72/633 (11%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S+  LKQ+HA ALRT   Q H       +      F++L++A +VF  + NPN F +N +
Sbjct: 42  SLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNII 101

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA----- 159
           I+ C ++ +        ++ MI      P+K T+P   KAC    A  +G Q HA     
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHAR--PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQ 159

Query: 160 ------HIFKRGLV--------------------SDVYINNSLIHFY------------- 180
                 HI   G+                     SDV   N++I  Y             
Sbjct: 160 GLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELF 219

Query: 181 ------------------ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
                             A CG ++ A ++F+ M E++ +SW+ MID +++ G +  AL+
Sbjct: 220 WSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALE 279

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +F  MQ     P  +   S+ +ACA L  L  G W HAY+    ++S   D ++  +L+D
Sbjct: 280 VFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV---NNNSNSFDAVLGTALVD 336

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG LD+A  VFE M K+++ +WN++I G  +HGRAE A++ F ++  ++ F PN I
Sbjct: 337 MYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQ-KQKFRPNGI 395

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T +GVLSAC H GMV EG   F+ M   Y I P +EHYGC+VDLL RAG + EA  ++ +
Sbjct: 396 TLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYS 455

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MPM+P A +W +LL AC +KH  V L E V K ++E E    SG Y LLS +YA A RW+
Sbjct: 456 MPMEPSAAVWGALLGAC-RKHGDVELGERVGKILLELEPQ-NSGRYALLSNIYARAGRWD 513

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
           DV  VRKLM ++GV    G S I+ DG+ HEF  GD SHPQ K IY  L  + ++LK  G
Sbjct: 514 DVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEG 573

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           ++P+ SQ  + D  ++ K++ L+ HSE+LAIA G++N KPG  I V KNLR+C+DCH   
Sbjct: 574 FSPNTSQV-LFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAF 632

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KLIS++++ EIIVRDRAR+HHFK G+CSC D+W
Sbjct: 633 KLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/605 (40%), Positives = 357/605 (59%), Gaps = 41/605 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALP----------------------------QQHKT 67
           L  S  + K+  + KQIHAQ L+  L                               H+ 
Sbjct: 84  LFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRD 143

Query: 68  LLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
           ++ Y+ +I  +AS  ++D A ++F +I   +  +WN +I   A  +    +A+ LF  M+
Sbjct: 144 VVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAE-IGRYKEALELFNEMM 202

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           +  +V PD+ T    L  C +      G+Q H+ I   G  S++ + N+LI  Y+ CG +
Sbjct: 203 KM-DVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEM 261

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSAC 245
           + A+ +F+ +  + ++SWN +I  +        AL +F+ M  L E P+  T  SI  AC
Sbjct: 262 ERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPAC 321

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  + +G W H YI +     ++T+  +  SLIDMY KCG+++ A QVF+++  + L+
Sbjct: 322 AHLGAIDIGRWIHVYIDKKLK-GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLS 380

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           S N++I GFA+HGRA+AA     R+  ++   P+ ITFVG+LSAC+H G+   GR  F  
Sbjct: 381 SCNAMIFGFAMHGRADAAFDLLSRMK-KDGIEPDDITFVGLLSACSHAGLSDLGRKIFKS 439

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M  +Y I P LEHYGC++DLL R+G   EA  L+++M M+PD VIW SLL AC K H ++
Sbjct: 440 MTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKAC-KIHKNL 498

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L E +A+++++ E     G YVLLS +YA++ RW+DV  VR L+ DKG+ K PGCSSIE
Sbjct: 499 ELGELIAQKLMKIEPK-NPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIE 557

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA--AMVDELDDGKQSSL 543
           ID + HEF  GD  HPQ K+IY  L+ ID  L   G+  D S+    M +EL +G   +L
Sbjct: 558 IDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEG---AL 614

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G+++ KPG  +R+ KNLRVC++CHE TKLIS+I+  EII RDR+RFHHF
Sbjct: 615 SYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHF 674

Query: 604 KDGSC 608
           KDG C
Sbjct: 675 KDGMC 679



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 189/370 (51%), Gaps = 47/370 (12%)

Query: 65  HKTLLIYSRIIHF----ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
           H T    S+++ F      F  L YA  VF  I+ PN  +WNT+IR  A S D    A+ 
Sbjct: 6   HNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDP-ISALN 64

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF- 179
           L+  MI  G + P+ +TFPF  K+CA   A  +GKQ HA I K GL  D++++ SLI   
Sbjct: 65  LYVYMISLG-LSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMY 123

Query: 180 ------------------------------YASCGHLDLANKVFDNMLERSLVSWNVMID 209
                                         YAS G++D A K+FD +  + +VSWN MI 
Sbjct: 124 AQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMIS 183

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + + G +  AL+LF  M  +  +PD  T  ++ S C     + LG   H++I    +H 
Sbjct: 184 GYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWI---DNHG 240

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA-LHGRAEAALKYF 327
             +++ + N+LID+Y KCG ++ A  +FE +  +D+ SWN++I G+A ++   EA L + 
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDL 385
           + L + E  +PN +T + +L AC H G +  GR +  V I++    I         L+D+
Sbjct: 301 EMLKLGE--TPNDVTMLSILPACAHLGAIDIGR-WIHVYIDKKLKGIITNTSLQTSLIDM 357

Query: 386 LARAGNIDEA 395
            A+ GNI+ A
Sbjct: 358 YAKCGNIEAA 367


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/548 (43%), Positives = 341/548 (62%), Gaps = 9/548 (1%)

Query: 65  HKTLLIYSRII-HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           H+ ++ Y+ +I  + S   ++ A ++F +I   +  +WN +I     + + K +A+ LF+
Sbjct: 152 HRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYK-EALELFK 210

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            M+   NV PD+ T    + ACA   +   G+  H+ I   G  S++ I N+LI  Y+  
Sbjct: 211 EMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSIT 242
           G ++ A ++FD +  + ++SWN +I  +     +  AL LF+ M    E P+  T  SI 
Sbjct: 271 GEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 330

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES-MPK 301
            ACA L  + +G W H YI +     +     +  SLIDMY KCG +D A+QVF+S M  
Sbjct: 331 PACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSN 390

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R L++WN++I GFA+HGRA AA   F R+ +     P+ ITFVG+LSAC+H GM+  GR+
Sbjct: 391 RSLSTWNAMISGFAMHGRANAAFDIFSRMRMN-GIEPDDITFVGLLSACSHSGMLDLGRN 449

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            F  M   Y ITP LEHYGC++DLL  +G   EA  +++ MPM+PD VIW SLL A CK 
Sbjct: 450 IFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKA-CKI 508

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE-PG 480
           H ++ L E  AK++I+ E G  SG YVLLS +YA+A RWN+V  +R L+ DKG+ K+ PG
Sbjct: 509 HGNLELGESFAKKLIKIEPG-NSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPG 567

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
           CSSIEID + HEF  GD  HPQ ++IYG L+ ++  L+  G+ PD S+     E ++ ++
Sbjct: 568 CSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEME-EEWRE 626

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +LR HSE+LAIA G+++ KPG  + + KNLRVCK+CHE TKLIS+I+  EII RDR RF
Sbjct: 627 GALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRF 686

Query: 601 HHFKDGSC 608
            HF+DG C
Sbjct: 687 XHFRDGVC 694



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 205/411 (49%), Gaps = 50/411 (12%)

Query: 47  SQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDYAFRVFYQIENPNSFTWN 102
           S ++ IHAQ ++T L   H T    S+++ F      F    YA  VF  I+ PN   WN
Sbjct: 2   SSVRXIHAQMIKTGL---HNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWN 58

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           T+ R  A S D    A+ L+  MI  G +LPD +TFPF LK+CA      +G+Q H H+ 
Sbjct: 59  TMFRGHALSSDP-VSALKLYLVMISLG-LLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVL 116

Query: 163 KRGLVSDVYINNSLIHFYA-------------------------------SCGHLDLANK 191
           K G   D+Y++ SLI  YA                               S G+++ A K
Sbjct: 117 KLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQK 176

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLA 249
           +FD +  + +VSWN MI  +V+ G +  AL+LF+ M ++    PD  T  ++ SACA   
Sbjct: 177 LFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSD 236

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           ++ LG   H++I    DH   +++ + N+LID+Y K G ++ A ++F+ +  +D+ SWN+
Sbjct: 237 SIELGRHVHSWI---NDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNT 293

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+      + AL  F  + +    +PN +T + +L AC H G +  GR +  V IN+
Sbjct: 294 LIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGR-WIHVYINK 351

Query: 370 Y---NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                +T V      L+D+ A+ G+ID A  +  +         W +++  
Sbjct: 352 KLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISG 402


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/600 (41%), Positives = 346/600 (57%), Gaps = 21/600 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           R     +NH +L   L +CK++  LKQ+HA  + T L      L   SRI+  +S     
Sbjct: 2   RGPNPSSNHPTL-QLLEKCKTLDTLKQVHAHMITTGLIFHTYPL---SRILLISSTIVFT 57

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           +A  +F  I NP  F +NTLI + A        A  L+ R++    + P+  TFP   KA
Sbjct: 58  HALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKA 117

Query: 145 CAYLFAFSQGKQAHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           C        G+  H H+ K      D ++  +L+++YA CG +     +F+ + +  L S
Sbjct: 118 CGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLAS 177

Query: 204 WNVMIDAFVQ--------FGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLG 254
           WN ++ A+V                L LF  MQ  L + +  T  ++ SACA L  LS G
Sbjct: 178 WNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQG 237

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
            WAH Y+L+H   +L  +  V  +LIDMY KCG LD+A Q+F+ +P RD   +N++I GF
Sbjct: 238 AWAHVYVLKH---NLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGF 294

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A+HG    AL  F ++ +E   +P+ +T V  + +C+H G+V EG D F+ M   Y + P
Sbjct: 295 AIHGYGHQALDLFKKMTLE-GLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEP 353

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            LEHYGCLVDLL RAG + EA   V NMPMKP+AVIWRSLL A  + H ++ + E V K 
Sbjct: 354 KLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAA-RVHGNLEIGEVVLKH 412

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           +I+ E    SG YVLLS +YAS  RW+DV  VRKLM D G+ K PG S +E+ G  HEF 
Sbjct: 413 LIQLEPET-SGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFL 471

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
            GD +HP++K+IY  L+ +  +L   G+ P  +   + D  ++ K+ +L  HSERLAIA 
Sbjct: 472 MGDKTHPRSKEIYLKLEEMSRRLHEYGHKPR-TLEVLFDIEEEEKEDALSYHSERLAIAF 530

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            ++      PIR+ KNLRVC DCH  +KLIS+I+  EIIVRDR RFHHFK+G+CSC DYW
Sbjct: 531 ALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/609 (39%), Positives = 357/609 (58%), Gaps = 37/609 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALP----------------------------QQHKT 67
           LL S  + K+ ++ +QIH Q L+                                  H+ 
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 68  LLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
           ++ Y+ +I  +AS  D+  A ++F +I   +  +WN +I   A +   K +A+ LF+ M+
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK-EALELFEEMM 188

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           +  NV PD+ T+   L ACA+  +   G+Q H+ +   G  S++ I N+LI  Y+ CG +
Sbjct: 189 KM-NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEV 247

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSAC 245
           + A  +F  +  + ++SWN +I  +     +  AL LF+ M    E P+  T  S+  AC
Sbjct: 248 ETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPAC 307

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  + +G W H YI +     +     +  SLIDMY KCG ++ A QVF SM  + L+
Sbjct: 308 AHLGAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN++I GFA+HGRA+A+   F R+  +    P+ ITFVG+LSAC+H GM+  GR  F  
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMR-KIGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 425

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M  +Y +TP LEHYGC++DLL  +G   EA  +++ M M+PD VIW SLL AC K H +V
Sbjct: 426 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC-KMHGNV 484

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L+E  A+ +I+ E    S  Y+LLS +YASA RW DV  +R L+  K + K PGCSSIE
Sbjct: 485 ELAESFAQNLIKIEPENPSS-YILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIE 543

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           +D +  EF  GD  HPQ ++IYG L+ ++  L+  G+ PD S+     E ++ K+ +LR 
Sbjct: 544 VDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRH 602

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G+++ KPG  + + KNLRVC++CHE TKL+S+I+  EI+ RDR RFHHF+D
Sbjct: 603 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRD 662

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 663 GVCSCNDYW 671



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 42/370 (11%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F  L YA  VF  I+ PN   WNT+IR  A S D    ++ L+  M+  G +LP+ +TFP
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDP-VSSLTLYVCMVSLG-LLPNSYTFP 68

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF-------------------- 179
           F LK+CA    F++G+Q H  + K G   D+Y++ SLI                      
Sbjct: 69  FLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128

Query: 180 -----------YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-M 227
                      YAS G +  A K+FD +  + +VSWN MI  + + G +  AL+LF   M
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           ++   PD  T+ ++ SACA   ++ LG   H+++    DH   +++ + N+LID+Y KCG
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWV---DDHGFDSNLKIVNALIDLYSKCG 245

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ A  +F+ +  +D+ SWN++I G+      + AL  F  + +    +PN +T + VL
Sbjct: 246 EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSVL 304

Query: 348 SACNHRGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            AC H G +  GR +  V I++    +T        L+D+ A+ G+I EA H V N  + 
Sbjct: 305 PACAHLGAIDIGR-WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI-EAAHQVFNSMLH 362

Query: 406 PDAVIWRSLL 415
                W +++
Sbjct: 363 KSLSSWNAMI 372


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/580 (40%), Positives = 348/580 (60%), Gaps = 11/580 (1%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           +S L +C +M + KQ HA+ L+  L                + +  +DYA  +F Q++  
Sbjct: 35  VSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDEL 94

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
            SF +NT++R   + ++ + +A++ ++ M E+G V PD  T+P  LKACA L A  +G Q
Sbjct: 95  GSFQFNTMMRGHVKDMNTE-EALITYKEMAERG-VKPDNFTYPTLLKACARLPAVEEGMQ 152

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HAHI K GL +DV++ NSLI  Y  CG + +   VF+ M ERS+ SW+ +I A    G 
Sbjct: 153 VHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGM 212

Query: 217 FDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           +   L+L   M  +  +  +     S+ SAC  L  L LG   H ++LR+       +V+
Sbjct: 213 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSG---LNVI 269

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V  SLI+MY KCGSL     +F+ M K++  S++ +I G A+HG     L+ F  ++ E+
Sbjct: 270 VETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEML-EQ 328

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+ I +VGVL+AC+H G+V EG   F+ M  E+ I P ++HYGC+VDL+ RAG IDE
Sbjct: 329 GLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDE 388

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           AL L+ +MPM+P+ V+WRSLL A  K H ++   E  AKQ+ + +    S  YV+LS +Y
Sbjct: 389 ALELIKSMPMEPNDVLWRSLLSA-SKVHNNLQAGEIAAKQLFKLDSQKASD-YVVLSNMY 446

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A A+RW DV   R  M  KG+++ PG S +E+    H F + D  HPQ++ +Y  L  ++
Sbjct: 447 AQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQME 506

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +LK  GY+PD +Q  + D  ++ K+  L  HS++LAIA  +++   G PIR+ +NLR+C
Sbjct: 507 WQLKFEGYSPDTTQ-VLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMC 565

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH  TKLIS IF+ EI VRDR RFHHFKDG+CSC DYW
Sbjct: 566 NDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/558 (42%), Positives = 342/558 (61%), Gaps = 50/558 (8%)

Query: 95  NPNSFTWNTLIRACARSV---DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           N  SF WN LIRA  RS     A P A+ L+ RM     VLPD HTFPF L++   +   
Sbjct: 21  NIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHA-VLPDLHTFPFLLQS---INTP 76

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG--------------------------- 184
            +G+Q HA I   GL +D ++  SLI+ Y+SCG                           
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 185 ----HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----FEPDGY 236
                + +A K+FD M E++++SW+ MI  +V  GE+ +AL LFR +Q L      P+ +
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T  S+ SACA L  L  G W HAYI +     +  DV++  SLIDMY KCGS++ A+ +F
Sbjct: 197 TMSSVLSACARLGALQHGKWVHAYIDKT---GMKIDVVLGTSLIDMYAKCGSIERAKCIF 253

Query: 297 ESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           +++ P++D+ +W+++I  F++HG +E  L+ F R+V  +   PN++TFV VL AC H G+
Sbjct: 254 DNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMV-NDGVRPNAVTFVAVLCACVHGGL 312

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           VSEG +YF  M+NEY ++P+++HYGC+VDL +RAG I++A ++V +MPM+PD +IW +LL
Sbjct: 313 VSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALL 372

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
           +   + H  V   E    +++E +    S  YVLLS VYA   RW +V  +R LM  +G+
Sbjct: 373 NG-ARIHGDVETCEIAITKLLELDPA-NSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGI 430

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            K PGCS +E+DG+  EFFAGD SHP+   +Y  LD I ++L+  GY  +  +  ++D  
Sbjct: 431 KKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGE-VLLDLD 489

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           ++GK+ +L LHSE+LAIA   L   PG  IR+ KNLR+C DCH   K+IS+ FN EIIVR
Sbjct: 490 EEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVR 549

Query: 596 DRARFHHFKDGSCSCMDY 613
           D  RFHHFK+G CSC DY
Sbjct: 550 DCNRFHHFKNGLCSCKDY 567


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/552 (43%), Positives = 343/552 (62%), Gaps = 9/552 (1%)

Query: 65  HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           H+ ++ Y+ +I  +AS   ++ A ++F +I   +  +WN +I   A + + K +A+ LF+
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK-EALELFK 255

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            M++  NV PD+ T    + ACA   +   G+Q H  I   G  S++ I N+LI  Y+ C
Sbjct: 256 DMMKT-NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC 314

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSIT 242
           G L+ A  +F+ +  + ++SWN +I  +     +  AL LF+ M    E P+  T  SI 
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            ACA L  + +G W H YI +     +     +  SLIDMY KCG ++ A QVF S+  +
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            L+SWN++I GFA+HGRA+A+   F R+  +    P+ ITFVG+LSAC+H GM+  GR  
Sbjct: 434 SLSSWNAMIFGFAMHGRADASFDLFSRMR-KIGIQPDDITFVGLLSACSHSGMLDLGRHI 492

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M  +Y +TP LEHYGC++DLL  +G   EA  +++ M M+PD VIW SLL AC K H
Sbjct: 493 FRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC-KMH 551

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            +V L E  A+ +I+ E     G YVLLS +YASA RWN+V   R L+ DKG+ K PGCS
Sbjct: 552 GNVELGESFAENLIKIEPE-NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
           SIEID + HEF  GD  HP+ ++IYG L+ ++  L+  G+ PD S+     E ++ K+ +
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEME-EEWKEGA 669

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           LR HSE+LAIA G+++ KPG  + + KNLRVC++CHE TKLIS+I+  EII RDR RFHH
Sbjct: 670 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729

Query: 603 FKDGSCSCMDYW 614
           F+DG CSC DYW
Sbjct: 730 FRDGVCSCNDYW 741



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 216/425 (50%), Gaps = 50/425 (11%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLD 84
           S  NH SL S L  CK++  L+ IHAQ ++  L   H T    S++I F      F  L 
Sbjct: 30  SIRNHPSL-SLLHNCKTLQSLRIIHAQMIKIGL---HNTNYALSKLIEFCILSPHFEGLP 85

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           YA  VF  I+ PN   WNT+ R  A S D    A+ L+  MI  G +LP+ +TFPF LK+
Sbjct: 86  YAISVFKTIQEPNLLIWNTMFRGHALSSDPV-SALKLYVCMISLG-LLPNSYTFPFVLKS 143

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF------------------------- 179
           CA   AF +G+Q H H+ K G   D+Y++ SLI                           
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 180 ------YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR-RMQILFE 232
                 YAS G+++ A K+FD +  + +VSWN MI  + + G +  AL+LF+  M+    
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           PD  T  ++ SACA   ++ LG   H +I    DH   +++ + N+LID+Y KCG L+ A
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWI---DDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
             +FE +P +D+ SWN++I G+      + AL  F  + +    +PN +T + +L AC H
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAH 379

Query: 353 RGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
            G +  GR +  V I++    +T        L+D+ A+ G+I EA H V N  +      
Sbjct: 380 LGAIDIGR-WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSS 437

Query: 411 WRSLL 415
           W +++
Sbjct: 438 WNAMI 442


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/584 (41%), Positives = 354/584 (60%), Gaps = 16/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +     +L+  H    R++    H+ ++ Y+ +I  +AS  ++  A  +F 
Sbjct: 104 HTSLISMYAQ---NGRLEDAHKVFDRSS----HRDVVSYTALITGYASSGNIRSAQEMFD 156

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I   A +   K +A+ LF+ M++  NV PD+ T    L ACA   + 
Sbjct: 157 EIPVKDVVSWNAMISGYAETGSYK-EALELFKEMMKT-NVRPDEGTMVTVLSACAQSRSV 214

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI  Y+ CG ++ A  +F+ +  + +VSWN +I  +
Sbjct: 215 ELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGY 274

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     + 
Sbjct: 275 THMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLK-DVT 333

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               +  SLIDMY KCG ++ A QVF SM  + L+SWN++I GFA+HGRA A    F R+
Sbjct: 334 NAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRM 393

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ ITFVG+LSAC+H G +  GR  F  M  +Y+ITP LEHYGC++DLL  +G
Sbjct: 394 R-KNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSG 452

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  ++  MPM+PD VIW SLL AC ++H ++ L+E  A+ +++ E     G YVLL
Sbjct: 453 LFKEAKEMIKTMPMEPDGVIWCSLLKAC-RRHGNLELAESFARNLMKVEPE-NPGSYVLL 510

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A  W++V  VR L+  KG+ K PGCSSIEID   HEF  GD  HP+ ++IYG L
Sbjct: 511 SNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGML 570

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 571 EEMEALLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 629

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC++CHE TKL+S+I+  EII RDR RFHHF+DG CSC D+W
Sbjct: 630 LRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 188/375 (50%), Gaps = 47/375 (12%)

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
           HF  F    YA  VF  I+ PN   WNT++R  A S D    A+ L+  MI  G +LP+ 
Sbjct: 12  HFDGFP---YAISVFATIQEPNQLIWNTMLRGYALSSDP-VSALKLYVVMISLG-LLPNS 66

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           +TFPF LK+CA   AF +G+Q H H+ K G   D+Y++ SLI  YA  G L+ A+KVFD 
Sbjct: 67  YTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDR 126

Query: 196 MLER-------------------------------SLVSWNVMIDAFVQFGEFDSALKLF 224
              R                                +VSWN MI  + + G +  AL+LF
Sbjct: 127 SSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELF 186

Query: 225 RR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           +  M+    PD  T  ++ SACA   ++ LG   H++I    DH   +++ + N+LID+Y
Sbjct: 187 KEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWI---DDHGFGSNLKIVNALIDLY 243

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG ++ A  +FE +  +D+ SWN++I G+      + AL  F  + +    SPN +T 
Sbjct: 244 SKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNDVTI 302

Query: 344 VGVLSACNHRGMVSEGR---DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           V +L AC H G +  GR    Y D  + +    P L     L+D+ A+ G+I EA H V 
Sbjct: 303 VSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDI-EAAHQVF 359

Query: 401 NMPMKPDAVIWRSLL 415
           N  +      W +++
Sbjct: 360 NSMLHKSLSSWNAMI 374


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/582 (41%), Positives = 344/582 (59%), Gaps = 19/582 (3%)

Query: 39  SLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           +L  C  M  L   + + A A++  L        + S +IH +AS  D+  A  VF   E
Sbjct: 126 ALKSCSRMCALDVGRGVQAYAVKRGLVADR---FVLSSLIHMYASCGDVAAARLVFDAAE 182

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
                 WN ++ A  ++ D   + + +F+ M+E G V  D+ T    + AC  +     G
Sbjct: 183 ESGVVMWNAIVAAYLKNGDWM-EVVEMFKGMLEVG-VAFDEVTLVSVVTACGRIGDAKLG 240

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K    H+ + GL  +  +  +L+  YA CG +  A ++FD M  R +V+W+ MI  + Q 
Sbjct: 241 KWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQA 300

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
            +   AL LF  MQ+   EP+  T  S+ SACA L  L  G W H+Y+ R     L    
Sbjct: 301 DQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRK---RLSLTT 357

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           ++  +L+D Y KCG +D A + FESMP ++  +W ++I G A +GR   AL+ F  +  E
Sbjct: 358 ILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMR-E 416

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P  +TF+GVL AC+H  +V EGR +FD M  +Y I P +EHYGC+VDLL RAG +D
Sbjct: 417 AGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVD 476

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA   +  MP++P+AVIWR+LL +C   H +V + EE  KQ+I S     SG YVLLS +
Sbjct: 477 EAYQFIRTMPIEPNAVIWRALLSSCAV-HRNVGIGEEALKQII-SLNPSHSGDYVLLSNI 534

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YASA +W D  +VRK M D+G+ K PGCS IE+DG+  EFFA D+ HP+ ++IY  ++ +
Sbjct: 535 YASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEM 594

Query: 514 DEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
             ++K  GY P+ +   + V+E +  K+ S+  HSE+LAIA G++ L PG  IR+ KNLR
Sbjct: 595 IGRIKVAGYVPNTADVRLEVEERE--KEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLR 652

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH  TKLIS++++ EI+VRDR  FHHFKDG+CSC DYW
Sbjct: 653 VCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 195/379 (51%), Gaps = 23/379 (6%)

Query: 47  SQLKQIHAQALR----TALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT-- 100
           S L Q+HA  ++    T   +   +LL  +     AS   L YA  +F     P   T  
Sbjct: 30  SYLPQLHAALIKSGELTGSAKSFHSLLEAAA----ASPTLLPYAVSLFRLGPRPPLSTPC 85

Query: 101 WNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAH 158
           +N L+RA   +    P+ A+ LF  M+   +  P D+HT   ALK+C+ + A   G+   
Sbjct: 86  YNVLMRAFLHA--GHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQ 143

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
           A+  KRGLV+D ++ +SLIH YASCG +  A  VFD   E  +V WN ++ A+++ G++ 
Sbjct: 144 AYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWM 203

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
             +++F+ M ++    D  T  S+ +AC  +    LG W   ++    +  L  +  +  
Sbjct: 204 EVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVD---EEGLARNPKLVT 260

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+DMY KCG +  AR++F+ M  RD+ +W+++I G+    +   AL  F  + +     
Sbjct: 261 ALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR-VE 319

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
           PN +T V VLSAC   G +  G+     V     ++T +L     LVD  A+ G ID+A+
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGT--ALVDFYAKCGCIDDAV 377

Query: 397 HLVSNMPMKPDAVIWRSLL 415
               +MP+K ++  W +L+
Sbjct: 378 EAFESMPVK-NSWTWTALI 395


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/590 (40%), Positives = 355/590 (60%), Gaps = 33/590 (5%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD---LDY 85
           S +N +  L  L  C +M +L+QIH Q L+T L       +  S+++ F +  +   L Y
Sbjct: 14  SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDE---IPASKLLAFCASPNSGSLAY 70

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF +I  PN+F WNT+IR  + S + + +A++L+  M+   +V  + +TFPF LKAC
Sbjct: 71  ARTVFDRIFRPNTFMWNTMIRGYSNSKEPE-EALLLYHHMLYH-SVPHNAYTFPFLLKAC 128

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           + + A  + +Q HAHI K G  S++Y  NSL++ Y+  G +  A  +FD + +R      
Sbjct: 129 SSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD----- 183

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
                         AL LF RMQ    + D     S   ACA L  L  G W HAYI +H
Sbjct: 184 ------------TEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 231

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               +  D ++   LIDMY KCG L+ A +VF  M ++ ++ W ++I G+A+HGR   AL
Sbjct: 232 ---EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 288

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           ++F ++       PN +TF G+L+AC+H G+V E +  F+ M   +   P +EHYGC+VD
Sbjct: 289 EWFMKMQTA-GVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 347

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL RAG + EA  L+ NMP+KP+A IW +LL+AC   H ++ L +++ K +I+ + G   
Sbjct: 348 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNAC-HIHGNLELGKQIGKILIQVDPG-HG 405

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G Y+ L+ ++A+A  WN    VR+ M ++GV+K PGCS I ++G AHEF AGD SHPQ K
Sbjct: 406 GRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIK 465

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +I   L+ I E+L+  GY P      +  E  + K++++  HSE+LA+  G+++ KPGM 
Sbjct: 466 EIDHMLEQIVERLREEGYKPKLGDLLLDLEDKE-KETAIHHHSEKLAVTFGLISTKPGMT 524

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IR+ KNLRVC+DCH V KLIS+++  EI++RDR RFH FKDG+C+C DYW
Sbjct: 525 IRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 353/612 (57%), Gaps = 45/612 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIE 94
           LL   T   ++   +++H   ++         + + + +IH  S + ++  A  VF +  
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSN---VFVQNALIHLYSLSGEVSVARGVFDRSS 181

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  TWN +I    RS     +++ LF  M E+  VLP   T    L AC+ L   + G
Sbjct: 182 KGDVVTWNVMISGYNRSKQFD-ESMKLFDEM-ERMRVLPSSITLVSVLSACSKLKDLNVG 239

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML----------------- 197
           K+ H ++    +     + N+LI  YA+CG +D A  +FDNM                  
Sbjct: 240 KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNL 299

Query: 198 --------------ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSIT 242
                         ER  VSW  MID ++Q   F   L LFR MQ    +PD +T  SI 
Sbjct: 300 GQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 359

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           +ACA L  L LG W  AYI ++    +  D  V N+LIDMY  CG+++ A ++F +MP R
Sbjct: 360 TACAHLGALELGEWIKAYIDKN---EIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR 416

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           D  SW ++I G A++G  E AL  F +++ + S +P+ +T +GVL AC H GMV +G+ +
Sbjct: 417 DKISWTAVIFGLAINGYGEEALDMFSQML-KASITPDEVTCIGVLCACTHSGMVDKGKKF 475

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M  ++ I P + HYGC+VDLL RAG++ EA  ++ NMP+KP++++W SLL AC + H
Sbjct: 476 FARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGAC-RVH 534

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
               ++E  A+Q++E E      VYVLL  +YA+  RW  +  VRKLM D+G+ K PGCS
Sbjct: 535 RDEEMAEMAAQQILELEPE-NGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCS 593

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
            IE++G  HEF AGD  HPQ+K+IY  LD +   LK  GY+PD S+   +D  ++ K+S+
Sbjct: 594 LIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEV-FLDIGEEEKESA 652

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           +  HSE+LAIA G+++  PG+ IR+ KNLR+C DCH V KL+S+++N E+IVRDR RFHH
Sbjct: 653 VYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHH 712

Query: 603 FKDGSCSCMDYW 614
           F+ GSCSC DYW
Sbjct: 713 FRHGSCSCKDYW 724



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 218/418 (52%), Gaps = 54/418 (12%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFYQI 93
           LS +  CKSM+QLKQIH+Q + T L       ++ ++II F       D++YA  VF  +
Sbjct: 23  LSLIKTCKSMAQLKQIHSQTICTGLISNP---IVPAQIIAFCCKHELGDMEYARMVFDTM 79

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             PN F WN +I+  +R V     A+ ++  M+E+G V+PD++T+PF LK      A   
Sbjct: 80  PGPNHFVWNNMIKGYSR-VGCPNSAVSMYCEMLERG-VMPDEYTYPFLLKRFTRDTAVKC 137

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G++ H HI K G  S+V++ N+LIH Y+  G + +A  VFD   +  +V+WNVMI  + +
Sbjct: 138 GRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNR 197

Query: 214 FGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
             +FD ++KLF    RM++L  P   T  S+ SAC+ L  L++G   H Y+    D  + 
Sbjct: 198 SKQFDESMKLFDEMERMRVL--PSSITLVSVLSACSKLKDLNVGKRVHRYVK---DLKIE 252

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
              ++ N+LIDMY  CG +D A  +F++M  RD+ SW +I+ GF   G+   A  YFD++
Sbjct: 253 PVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKM 312

Query: 331 VVEE------------------------------SFSPNSITFVGVLSACNHRGMVSEG- 359
              +                              +  P+  T V +L+AC H G +  G 
Sbjct: 313 PERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGE 372

Query: 360 --RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             + Y D   NE  I   + +   L+D+    GN+++A+ + + MP + D + W +++
Sbjct: 373 WIKAYIDK--NEIKIDSFVGN--ALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTAVI 425


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/654 (39%), Positives = 374/654 (57%), Gaps = 52/654 (7%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNN--RNEGSFNNHSS---LLSSLTECKSMSQLKQIHAQ 55
           M   +++GGP      S +   ++  R      N  S   +LS    CK++  LKQ+HAQ
Sbjct: 30  MYQELIEGGPKFCCGWSDAKLQSSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQ 89

Query: 56  AL-RTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
            +     P Q   L   S +  F +F  L YA  +F+ ++NP    +N+LIRA + S   
Sbjct: 90  IITHHNSPFQLSALASLSALSPFPTF--LAYAKTIFHHLQNPPPSLYNSLIRALSSS-KT 146

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
             +A+ L+  M++ G + PD  T+PF +KAC        G   H H+ K G   D YI +
Sbjct: 147 PLEALPLYHTMLQSG-LKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVS 205

Query: 175 SLIHFYAS-------------CGHLDL------------------ANKVFDNMLERSLVS 203
           SLIH YA+             C   D+                  A  VFD M+ R ++S
Sbjct: 206 SLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVIS 265

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI+ +   G+ + AL LF +M+ +  +P   T  S+ SACA L  L  G+  H YI 
Sbjct: 266 WNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI- 324

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
              D+ +  + +V  +L+DMY KCG + +A QVF +M  +D+ +WN+II G A+HG  + 
Sbjct: 325 --NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKE 382

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A + F  +  E    PN ITFV +LSAC+H GMV EG+   D M + Y I P +EHYGC+
Sbjct: 383 AQQLFKEMK-EAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCV 441

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           +DLLARAG ++EA+ L+  MPM+P+     +LL  C + H +  L E V K++I  +   
Sbjct: 442 IDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGC-RIHGNFELGEMVGKRLINLQP-- 498

Query: 443 C-SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
           C SG Y+LLS +YA+A++W+D   VR LM   G++K PG S IE+ G+ H F AGD SHP
Sbjct: 499 CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHP 558

Query: 502 QTKQIYGFLDLIDEKLKSR-GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           ++ +IY  L+ I  +LKS  GY+ D     ++D  ++ K+ +L +HSE+LAIA G+L+L 
Sbjct: 559 ESNKIYEKLNEIHTRLKSAIGYSADTGNV-LLDMEEEDKEHALAVHSEKLAIAYGLLHLD 617

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
               IR+ KNLRVC+DCH V KLIS+++  EIIVRDR RFHHF+DG CSC+D+W
Sbjct: 618 SKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/610 (40%), Positives = 353/610 (57%), Gaps = 54/610 (8%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           KS   L QIHA  LR  L   H  +L +     +AS   L ++  +F++  NPN F W  
Sbjct: 34  KSTHHLLQIHAALLRRGL--HHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTH 91

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +I A A   D    A+  + +M+    + P+  T    LKAC         +  H+H  K
Sbjct: 92  IINAHAH-FDLFHHALSYYSQMLTH-PIQPNAFTLSSLLKACT----LHPARAVHSHAIK 145

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-------------------- 203
            GL S +Y++  L+  YA  G +  A K+FD M ERSLVS                    
Sbjct: 146 FGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVL 205

Query: 204 -----------WNVMIDAFVQFGEFDSALKLFRRMQIL--------FEPDGYTFQSITSA 244
                      WNVMID + Q G  + AL  FR+M ++          P+  T  ++ S+
Sbjct: 206 FEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSS 265

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  +  L  G W H+Y+    ++ +  +V V  +L+DMYCKCGSL+ AR+VF+ M  +D+
Sbjct: 266 CGQVGALECGKWVHSYVE---NNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDV 322

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +WNS+I+G+ +HG ++ AL+ F  +       P+ ITFV VL+AC H G+VS+G + FD
Sbjct: 323 VAWNSMIMGYGIHGFSDEALQLFHEMCCI-GVKPSDITFVAVLTACAHAGLVSKGWEVFD 381

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M + Y + P +EHYGC+V+LL RAG + EA  LV +M ++PD V+W +LL AC + H++
Sbjct: 382 SMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWAC-RIHSN 440

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V L EE+A +++ S G   SG YVLLS +YA+AR W  V  VR +M   GV KEPGCSSI
Sbjct: 441 VSLGEEIA-EILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSI 499

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           E+    HEF AGD  HP++K IY  L+ ++  LK R YTP  + A + D  +  K+ SL 
Sbjct: 500 EVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPK-TDAVLHDIGEQEKEQSLE 558

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
           +HSE+LA+A G+++  PG  I++ KNLRVC DCH V K++S+I   +II+RDR RFHHF+
Sbjct: 559 VHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFE 618

Query: 605 DGSCSCMDYW 614
           +GSCSC DYW
Sbjct: 619 NGSCSCRDYW 628


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 338/582 (58%), Gaps = 12/582 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+   L E   +   K +HA  +R     +    L  + I  +    +L YA RVF  + 
Sbjct: 230 SITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLS 289

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +W  +I A     +   + + LF +M+ +G + P++ T    +K C    A   G
Sbjct: 290 KASIISWTAMIAAYIHCNNLN-EGVRLFVKMLGEG-MFPNEITMLSLVKECGTAGALELG 347

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  HA   + G    + +  + I  Y  CG +  A  VFD+   + L+ W+ MI ++ Q 
Sbjct: 348 KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN 407

Query: 215 GEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
              D A  +F  M      P+  T  S+   CA   +L +G W H+YI +     +  D+
Sbjct: 408 NCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQ---GIKGDM 464

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           ++  S +DMY  CG +D A ++F     RD++ WN++I GFA+HG  EAAL+ F+ +   
Sbjct: 465 ILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEAL 524

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
              +PN ITF+G L AC+H G++ EG+  F  M++E+  TP +EHYGC+VDLL RAG +D
Sbjct: 525 -GVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLD 583

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA  L+ +MPM+P+  ++ S L A CK H ++ L E  AKQ +  E    SG  VL+S +
Sbjct: 584 EAHELIKSMPMRPNIAVFGSFL-AACKLHKNIKLGEWAAKQFLSLEPHK-SGYNVLMSNI 641

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YASA RW DV  +R+ M D+G+ KEPG SSIE++G+ HEF  GD  HP  K++Y  +D +
Sbjct: 642 YASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEM 701

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQ-SSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
            EKL+  GYTPD S   ++  +D  K+ S+L  HSE+LA+A G+++  PG+PIR+ KNLR
Sbjct: 702 REKLEDAGYTPDVS--CVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLR 759

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH  TKL+S+I+  EIIVRDR RFHHFK+GSCSC DYW
Sbjct: 760 VCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 147/288 (51%), Gaps = 11/288 (3%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D    P  LKAC  + +F  G++ H  + K G   DV++ N+LI  Y+  G L LA  +F
Sbjct: 123 DNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLF 182

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D +  + +VSW+ MI ++ + G  D AL L R M ++  +P      SIT   A LA L 
Sbjct: 183 DKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLK 242

Query: 253 LGMWAHAYILRH--CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           LG   HAY++R+  C  S    V +  +LIDMY KC +L  AR+VF+ + K  + SW ++
Sbjct: 243 LGKAMHAYVMRNGKCGKS---GVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAM 299

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NE 369
           I  +         ++ F +++ E  F PN IT + ++  C   G +  G+      + N 
Sbjct: 300 IAAYIHCNNLNEGVRLFVKMLGEGMF-PNEITMLSLVKECGTAGALELGKLLHAFTLRNG 358

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + ++ VL      +D+  + G++  A  +  +   K D ++W +++ +
Sbjct: 359 FTLSLVLA--TAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMISS 403



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 13/348 (3%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I+ ++    L  A  +F +IEN +  +W+T+IR+  RS     +A+ L + M     V P
Sbjct: 166 IMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS-GLLDEALDLLRDM-HVMRVKP 223

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV--SDVYINNSLIHFYASCGHLDLANK 191
            +          A L     GK  HA++ + G    S V +  +LI  Y  C +L  A +
Sbjct: 224 SEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARR 283

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLA 249
           VFD + + S++SW  MI A++     +  ++LF +M  + +F P+  T  S+   C    
Sbjct: 284 VFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF-PNEITMLSLVKECGTAG 342

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L LG   HA+ LR   +     +++  + IDMY KCG +  AR VF+S   +DL  W++
Sbjct: 343 ALELGKLLHAFTLR---NGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSA 399

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I  +A +   + A   F  +       PN  T V +L  C   G +  G+ +    I++
Sbjct: 400 MISSYAQNNCIDEAFDIFVHM-TGCGIRPNERTMVSLLMICAKAGSLEMGK-WIHSYIDK 457

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             I   +      VD+ A  G+ID A  L +    + D  +W +++  
Sbjct: 458 QGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMISG 504



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 16/346 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F     EG F N  ++LS + EC +   L   K +HA  LR         +L  + I  
Sbjct: 315 LFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLS--LVLATAFIDM 372

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    D+  A  VF   ++ +   W+ +I + A++ +   +A  +F  M   G + P++ 
Sbjct: 373 YGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN-NCIDEAFDIFVHMTGCG-IRPNER 430

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L  CA   +   GK  H++I K+G+  D+ +  S +  YA+CG +D A+++F   
Sbjct: 431 TMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEA 490

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            +R +  WN MI  F   G  ++AL+LF  M+ L   P+  TF     AC+    L  G 
Sbjct: 491 TDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGK 550

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGF 314
                ++   +      V     ++D+  + G LD A ++ +SMP R ++  + S +   
Sbjct: 551 RLFHKMVH--EFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAAC 608

Query: 315 ALHGR---AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            LH      E A K F  L +E   S  ++    + ++ N  G V+
Sbjct: 609 KLHKNIKLGEWAAKQF--LSLEPHKSGYNVLMSNIYASANRWGDVA 652



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           E D +   S+  AC  + +  LG   H +++++  H    DV V N+LI MY + GSL +
Sbjct: 121 EVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHG---DVFVCNALIMMYSEVGSLAL 177

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           AR +F+ +  +D+ SW+++I  +   G  + AL     + V     P+ I  + +
Sbjct: 178 ARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMR-VKPSEIGMISI 231


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/583 (40%), Positives = 351/583 (60%), Gaps = 16/583 (2%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF----ADLDYAFRVFYQ 92
           LS L++C S+++LKQI A  ++T L      + + +++I+F +     + +D+A  +F Q
Sbjct: 33  LSLLSKCTSLNELKQIQAYTIKTNL---QSDISVLTKLINFCTLNPTTSYMDHAHHLFDQ 89

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I + +   +N + R  ARS ++   A  LF  ++  G +LPD +TF   LKACA   A  
Sbjct: 90  ILDKDIILFNIMARGYARS-NSPYLAFSLFGELLCSG-LLPDDYTFSSLLKACASSKALR 147

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           +G   H    K GL  ++YI  +LI+ YA C  ++ A  VFD M +  +VS+N +I  + 
Sbjct: 148 EGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYA 207

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           +  + + AL LFR +Q    EP   T  S+  +CA L  L LG W H Y+ +        
Sbjct: 208 RSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK---GFDK 264

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
            V VN +LIDM+ KCGSL  A  +FE M  RD  +W+++I+ FA HG    A+  F+ + 
Sbjct: 265 YVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMK 324

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
             E   P+ ITF+G+L AC+H G+V +GR YF  M   Y ITP ++HYGC+VDLL RAG+
Sbjct: 325 -REGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGH 383

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           +DEA + V  + +K   ++WR+LL AC   H +V +++ V +++ E +     G YV+LS
Sbjct: 384 LDEAYNFVDKLEIKATPILWRTLLSAC-STHGNVEMAKRVIERIFELDDAH-GGDYVILS 441

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YA   RW DV  +RKLM D+GV K PGCSS+E++ + HEFF+GD  H  + ++   LD
Sbjct: 442 NLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALD 501

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + +++K  GY PD S     D  ++GK+  LR HSE+LA+A G+LN  PG  IRV KNL
Sbjct: 502 ELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNL 561

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+C DCH   KLIS IF  +I++RD  RFH F+DG CSC D+W
Sbjct: 562 RICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/616 (40%), Positives = 355/616 (57%), Gaps = 38/616 (6%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           EG   +  ++ S L  C  + +L   K+IHA  LR     ++ + +  + +  + +   +
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN-SFVGSALVDMYCNCRQV 349

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +   RVF  I       WN +I   AR+ +D K  A++LF  MI+   +LP+  T    +
Sbjct: 350 ESGRRVFDHILGRRIELWNAMISGYARNGLDEK--ALILFIEMIKVAGLLPNTTTMASVM 407

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC +  AFS  +  H +  K G   D Y+ N+L+  Y+  G +D++  +FD+M  R  V
Sbjct: 408 PACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRV 467

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL------------------FEPDGYTFQSITSA 244
           SWN MI  +V  G + +AL L   MQ +                  ++P+  T  ++   
Sbjct: 468 SWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPG 527

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA LA ++ G   HAY +R+    L +D+ V ++L+DMY KCG L+++R+VF  MP +++
Sbjct: 528 CAALAAIAKGKEIHAYAIRNM---LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNV 584

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEES----FSPNSITFVGVLSACNHRGMVSEGR 360
            +WN +I+   +HG+ E AL+ F  +V E        PN +TF+ V +AC+H G++SEG 
Sbjct: 585 ITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGL 644

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACC 419
           + F  M +++ + P  +HY C+VDLL RAG ++EA  LV+ MP + D V  W SLL AC 
Sbjct: 645 NLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC- 703

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H +V L E  AK ++  E  + S  YVLLS +Y+SA  WN    VRK M   GV KEP
Sbjct: 704 RIHQNVELGEVAAKNLLHLEPNVASH-YVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 762

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDG 538
           GCS IE     H+F AGD SHPQ++Q++GFL+ + EK++  GY PD S     VDE  D 
Sbjct: 763 GCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDE--DE 820

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K++ L  HSE+LAIA GILN  PG  IRV KNLRVC DCH  TK IS+I   EIIVRD  
Sbjct: 821 KENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVR 880

Query: 599 RFHHFKDGSCSCMDYW 614
           RFHHFK+G+CSC DYW
Sbjct: 881 RFHHFKEGTCSCGDYW 896



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 190/389 (48%), Gaps = 20/389 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           ++L +++  + +   +QIHA A++        T+   + +  +     +    +VF +I 
Sbjct: 97  AVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTV-ANTLVNMYGKCGGIGDVCKVFDRIT 155

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAF 151
           + +  +WN+ I A  R  +   QA+  F R ++  N+     T      AC+ L      
Sbjct: 156 DRDQVSWNSFIAALCR-FEKWEQALEAF-RAMQMENMELSSFTLVSVALACSNLGVMHGL 213

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ H +  + G     + NN+L+  YA  G +D +  +F++ ++R +VSWN MI +F
Sbjct: 214 RLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSF 272

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q   F  AL  FR M +   E DG T  S+  AC+ L  L +G   HAY+LR+ D  L+
Sbjct: 273 SQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNND--LI 330

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V ++L+DMYC C  ++  R+VF+ +  R +  WN++I G+A +G  E AL  F  +
Sbjct: 331 ENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM 390

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLL 386
           +      PN+ T   V+ AC H    S         I+ Y +    +        L+D+ 
Sbjct: 391 IKVAGLLPNTTTMASVMPACVHCEAFSNKES-----IHGYAVKLGFKEDRYVQNALMDMY 445

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +R G +D +  +  +M ++ D V W +++
Sbjct: 446 SRMGKMDISETIFDSMEVR-DRVSWNTMI 473



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 138/267 (51%), Gaps = 12/267 (4%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +W   +R+  RS D + +AI  +  M   G   PD   FP  LKA + L     G+Q HA
Sbjct: 59  SWVDALRSRTRSNDFR-EAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQIHA 116

Query: 160 HIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
              K G   S V + N+L++ Y  CG +    KVFD + +R  VSWN  I A  +F +++
Sbjct: 117 AAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWE 176

Query: 219 SALKLFRRMQIL-FEPDGYTFQSITSACAGLAT---LSLGMWAHAYILRHCDHSLVTDVL 274
            AL+ FR MQ+   E   +T  S+  AC+ L     L LG   H Y LR  D    T   
Sbjct: 177 QALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFT--- 233

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
            NN+L+ MY K G +D ++ +FES   RD+ SWN++I  F+   R   AL +F RL+V E
Sbjct: 234 -NNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF-RLMVLE 291

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRD 361
               + +T   VL AC+H   +  G++
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKE 318


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/608 (39%), Positives = 359/608 (59%), Gaps = 18/608 (2%)

Query: 14  QTHSHSIFNNNRNEGSFN---NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQH--KTL 68
           Q+H  S+ N+       N   N    LS L  CKSM + KQ+HA  L+  L       + 
Sbjct: 9   QSHLLSLPNSPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSN 68

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           L+ S     + +  ++YA  +F QIE P SF +NT+IR    S+D + +A++L+  M+E+
Sbjct: 69  LVAS--CALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLE-EALLLYVEMLER 125

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G + PD  T+PF LKAC+ L A  +G Q HAH+FK GL  DV++ N LI  Y  CG ++ 
Sbjct: 126 G-IEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEH 184

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACA 246
           A  VF+ M E+S+ SW+ +I A      +   L L   M  +     +     S  SAC 
Sbjct: 185 AGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACT 244

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L + +LG   H  +LR+       +V+V  SLIDMY KCGSL+    VF++M  ++  S
Sbjct: 245 HLGSPNLGRCIHGILLRNISE---LNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYS 301

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +  +I G A+HGR   A++ F  ++ EE  +P+ + +VGVLSAC+H G+V+EG   F+ M
Sbjct: 302 YTVMIAGLAIHGRGREAVRVFSDML-EEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRM 360

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             E+ I P ++HYGC+VDL+ RAG + EA  L+ +MP+KP+ V+WRSLL A CK H ++ 
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSA-CKVHHNLE 419

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           + E  A+ +         G Y++L+ +YA A++W +V  +R  M +K + + PG S +E 
Sbjct: 420 IGEIAAENIFRLNKH-NPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEA 478

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           +   ++F + D S P  + IY  +  ++ +LK  GYTPD SQ  ++D  +D K+  L+ H
Sbjct: 479 NRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQ-VLLDVDEDEKRQRLKHH 537

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           S++LAIA  ++    G PIR+ +NLR+C DCH  TK IS I+  EI VRDR RFHHFKDG
Sbjct: 538 SQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDG 597

Query: 607 SCSCMDYW 614
           +CSC DYW
Sbjct: 598 TCSCKDYW 605


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/571 (40%), Positives = 341/571 (59%), Gaps = 11/571 (1%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           M + KQ HA+ L+  L                + +  +DYA  +F Q++ P SF +NT++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           R   + ++ + +A++ ++ M E+G V PD  T+P  LKACA L A  +G Q HAHI K G
Sbjct: 61  RGHVKDMNTE-EALITYKEMAERG-VKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLG 118

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L +DV++ NSLI  Y  CG + +   VF+ M ERS+ SW+ +I A    G +   L+L  
Sbjct: 119 LENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLG 178

Query: 226 RM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
            M  +  +  +     S+ SAC  L  L LG   H ++LR+       +V+V  SLI+MY
Sbjct: 179 DMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSG---LNVIVETSLIEMY 235

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG L     +F+ M K++  S++ +I G A+HG     L+ F  ++ E+   P+ I +
Sbjct: 236 LKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEML-EQGLEPDDIVY 294

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           VGVL+AC+H G+V EG   F+ M  E+ I P ++HYGC+VDL+ RAG IDEAL L+ +MP
Sbjct: 295 VGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMP 354

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           M+P+ V+WRSLL A  K H ++   E  AKQ+ + +    S  YV+LS +YA A+RW DV
Sbjct: 355 MEPNDVLWRSLLSA-SKVHNNLQAGEIAAKQLFKLDSQKASD-YVVLSNMYAQAQRWEDV 412

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
              R  M  KG+++ PG S +E+    H F + D  HPQ++ +Y  L  ++ +LK  GY 
Sbjct: 413 ARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYX 472

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD +Q  + D  ++ K+  L  HS++LAIA  +++   G P+R+ +NLR+C DCH  TKL
Sbjct: 473 PDTTQ-VLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKL 531

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS IF+ EI VRDR RFHHFKDG+CSC DYW
Sbjct: 532 ISIIFDREITVRDRHRFHHFKDGACSCRDYW 562


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/528 (43%), Positives = 336/528 (63%), Gaps = 12/528 (2%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F QI +P +F +N+LIRA   +  A   A+ +++RM+  G+  P+  T  FALKACA +
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 188

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVM 207
            A  +G+Q HA   ++GL +  Y+   L++ YA C  + LA  VFD M  +++LV+W+ M
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 248

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +  + + G  + AL LFR MQ +  EPD  T  S+ SACA    L LG W HAYI R   
Sbjct: 249 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK-- 306

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             +  D+ ++ +LIDMY KCG ++ AR VF++M ++D  +W+++I+GFA+HG  E AL  
Sbjct: 307 -GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 365

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F R++ E    PN++TF+GVLSAC H G+V +GR Y+ +M N   I P +E+YGC+VDLL
Sbjct: 366 FSRML-ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCMVDLL 423

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G +D+A   V  MP+ P++VIWR+LL AC K    + ++E   K+++E E       
Sbjct: 424 CRSGLLDDAYSFVIGMPVSPNSVIWRTLLVAC-KSSNRIDIAESATKRLLELEPHNPEN- 481

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +YAS  +W+ V  +R+ M  K VT   G SSIEI+G  HEF   D SHP+ ++I
Sbjct: 482 YVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREI 541

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              L  + ++++  G+ P ++ A + D  ++ K+++L  HSERLAIA G+L  +    IR
Sbjct: 542 RLVLREMADRVRRAGHKP-WTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIR 600

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLR C DCHEV K+IS+ +N EI+VRDR RFH F  GSCSC D+W
Sbjct: 601 VVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/610 (39%), Positives = 348/610 (57%), Gaps = 52/610 (8%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFADLDYAFRVFYQIENPNSFTWNT 103
           S+  LK +HA  LR  L +    L   ++++ F+ +F + +Y+ R+F+Q + PN F +NT
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLL---NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +I     + D+  ++I ++  M ++G + PD  TFPF LKACA L     G + H  + K
Sbjct: 79  MIHGLVLN-DSFQESIEIYHSMRKEG-LSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
            G  SD ++N SL+  Y  CG +D A KVFD++ E+++ +W  +I  ++  G+   A+ +
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDM 196

Query: 224 FRRMQILFE---------------------------------------PDGYTFQSITSA 244
           FRR   +F+                                       PD Y    +  A
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCA 256

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA L  L LG WA   + R+     + + ++  +LIDMY KCG +D A +VF  M K+D+
Sbjct: 257 CARLGALELGNWASNLMDRN---EFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDI 313

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
             WN+ I G A+ G  +AA   F ++  +    P+  TFVG+L AC H G+V EGR YF+
Sbjct: 314 VVWNAAISGLAMSGHVKAAFGLFGQME-KSGIEPDGNTFVGLLCACTHAGLVDEGRQYFN 372

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M   + +TP +EHYGC+VDLL RAG +DEA  LV +MPM+ +A++W +LL   C+ H  
Sbjct: 373 SMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGG-CRLHRD 431

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
             L E V KQ+I  E    SG YVLLS +Y+++ +W D   +R +M+++G+ K PG S I
Sbjct: 432 TQLVEGVLKQLIALEPS-NSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWI 490

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           E+DG+ HEF  GDTSHP +++IY  L  + + LK+ GY P  +   + D  ++ K+  + 
Sbjct: 491 EVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPT-TDYVLFDIEEEEKEHFIG 549

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAIA G+++  P   IRV KNLRVC DCHE  K ISR    EIIVRD  RFH F 
Sbjct: 550 CHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFN 609

Query: 605 DGSCSCMDYW 614
           DGSCSC DYW
Sbjct: 610 DGSCSCKDYW 619


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 352/613 (57%), Gaps = 45/613 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIE 94
           ++ + +E K+      +H  A++ +       L I + ++ F  +  DL  A R+F  I 
Sbjct: 132 VIKAASELKASRVGTAVHGMAIKLSFGMD---LYILNSLVRFYGACGDLSMAERLFKGIS 188

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WN++I A A+  +    A+ LF +M E+ NV+P+  T    L ACA       G
Sbjct: 189 CKDVVSWNSMISAFAQG-NCPEDALELFLKM-ERENVMPNSVTMVGVLSACAKKLDLEFG 246

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +   ++I ++G+  D+ + N+++  Y  CG +D A K+FD M ER + SW +M+D + + 
Sbjct: 247 RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKM 306

Query: 215 GEFDSA-------------------------------LKLFRRMQI--LFEPDGYTFQSI 241
           G++D+A                               L +F  +Q+  + +PD  T  S 
Sbjct: 307 GDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVST 366

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA L  + LG W H YI R     +V +  + +SL+DMY KCGSL+ A +VF S+ +
Sbjct: 367 LSACAQLGAIDLGGWIHVYIKRE---GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD+  W+++I G  +HGR +AA+  F  +  E    PNS+TF  VL AC+H G+V EGR 
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQ-EAKVKPNSVTFTNVLCACSHAGLVDEGRV 482

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +F  M   Y + P ++HY C+VD+L RAG ++EA+ L++ M   P A +W +LL AC   
Sbjct: 483 FFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGAC-SL 541

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +V L E  + Q+++ E     G  VLLS +YA   RW  V  +RKLM D  + KEPGC
Sbjct: 542 HMNVELGELASDQLLKLEPR-NHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGC 600

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           SSIE +G  HEF  GD +HP +  IY  L+ I  KLKS GY P+ S    + E DD K+ 
Sbjct: 601 SSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQ 660

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +L LHSE+LAIA G++ L P  PIRV KNLR+C DCH   KL+SR+++ +I++RDR RFH
Sbjct: 661 ALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFH 720

Query: 602 HFKDGSCSCMDYW 614
           HF+DG CSCMDYW
Sbjct: 721 HFRDGHCSCMDYW 733



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 226/440 (51%), Gaps = 48/440 (10%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKT 67
           P+    + S  NNN     F NH  +LS++ +C S  QLK++HA+ LRT L   P     
Sbjct: 7   PSISLQNFSTLNNNL---LFRNHQ-ILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASK 62

Query: 68  LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
           L   S +   +SF+ LDYA  +F QI  PN +TWNTLIRA A S D   Q+ V+F  +++
Sbjct: 63  LFTASAL---SSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPF-QSFVIFLDLLD 118

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +   LP+K TFPF +KA + L A   G   H    K     D+YI NSL+ FY +CG L 
Sbjct: 119 KCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLS 178

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
           +A ++F  +  + +VSWN MI AF Q    + AL+LF +M+     P+  T   + SACA
Sbjct: 179 MAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACA 238

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD--- 303
               L  G W  +YI R     +  D+ + N+++DMY KCGS+D A+++F+ MP+RD   
Sbjct: 239 KKLDLEFGRWVCSYIER---KGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFS 295

Query: 304 ----------------------------LTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
                                       + +WN +I  +  +G+ + AL  F+ L + + 
Sbjct: 296 WTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI 355

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ +T V  LSAC   G +  G  +  V I    I         LVD+ A+ G++++A
Sbjct: 356 AKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKA 414

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
           L +  ++  + D  +W +++
Sbjct: 415 LEVFYSVEER-DVYVWSAMI 433



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 141/297 (47%), Gaps = 17/297 (5%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA--SCGHLD 187
           N+L   H     +  C+   +  Q K+ HA + + GL  D +  + L    A  S   LD
Sbjct: 20  NLLFRNHQILSTIDKCS---SSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLD 76

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITS 243
            A  +FD + + +L +WN +I A+      F  F   L L  + + L  P+ +TF  +  
Sbjct: 77  YARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDL--PNKFTFPFVIK 134

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           A + L    +G   H   ++    S   D+ + NSL+  Y  CG L +A ++F+ +  +D
Sbjct: 135 AASELKASRVGTAVHGMAIKL---SFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKD 191

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SWNS+I  FA     E AL+ F ++   E+  PNS+T VGVLSAC  +  +  GR + 
Sbjct: 192 VVSWNSMISAFAQGNCPEDALELFLKME-RENVMPNSVTMVGVLSACAKKLDLEFGR-WV 249

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              I    I   L     ++D+  + G++D+A  L   MP + D   W  +LD   K
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER-DVFSWTIMLDGYAK 305



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 152/335 (45%), Gaps = 22/335 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH---FASFADLDYAFRVF 90
           +++L   T+C S+       AQ L   +P++     ++S  I    +A   D D A  VF
Sbjct: 266 NAMLDMYTKCGSVDD-----AQKLFDEMPERD----VFSWTIMLDGYAKMGDYDAARLVF 316

Query: 91  YQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
             +       WN LI A  +  + KP +A+ +F  +       PD+ T    L ACA L 
Sbjct: 317 NAMPVKEIAAWNVLISAYEQ--NGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLG 374

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A   G   H +I + G+V + ++ +SL+  YA CG L+ A +VF ++ ER +  W+ MI 
Sbjct: 375 AIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIA 434

Query: 210 AFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLG-MWAHAYILRHCDH 267
                G   +A+ LF  MQ    +P+  TF ++  AC+    +  G ++ H        +
Sbjct: 435 GLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEM---EPVY 491

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAEAALKY 326
            +V ++     ++D+  + G L+ A ++   M      S W +++   +LH   E     
Sbjct: 492 GVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELA 551

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHR-GMVSEGR 360
            D+L+  E  +  +I  +  + A   R   VSE R
Sbjct: 552 SDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELR 586


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/528 (43%), Positives = 336/528 (63%), Gaps = 12/528 (2%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F QI +P +F +N+LIRA   +  A   A+ +++RM+  G+  P+  T  FALKACA +
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVM 207
            A  +G+Q HA   ++GL +  Y+   L++ YA C  + LA  VFD M  +++LV+W+ M
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 199

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +  + + G  + AL LFR MQ +  EPD  T  S+ SACA    L LG W HAYI R   
Sbjct: 200 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK-- 257

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             +  D+ ++ +LIDMY KCG ++ AR VF++M ++D  +W+++I+GFA+HG  E AL  
Sbjct: 258 -GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 316

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F R++ E    PN++TF+GVLSAC H G+V +GR Y+ +M N   I P +E+YGC+VDLL
Sbjct: 317 FSRML-ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCMVDLL 374

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G +D+A   V  MP+ P++VIWR+LL AC K    + ++E   K+++E E       
Sbjct: 375 CRSGLLDDAYSFVIGMPVSPNSVIWRTLLVAC-KSSNRIDIAESATKRLLELEPHNPEN- 432

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +YAS  +W+ V  +R+ M  K VT   G SSIEI+G  HEF   D SHP+ ++I
Sbjct: 433 YVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREI 492

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              L  + ++++  G+ P ++ A + D  ++ K+++L  HSERLAIA G+L  +    IR
Sbjct: 493 RLVLREMADRVRRAGHKP-WTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIR 551

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLR C DCHEV K+IS+ +N EI+VRDR RFH F  GSCSC D+W
Sbjct: 552 VVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/599 (40%), Positives = 359/599 (59%), Gaps = 15/599 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   + EG   N  S LS L  C +   L   K +HAQ + T L    +      R+  
Sbjct: 250 LFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRM-- 307

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     ++ A RVF +++  +  +W  +IR  A + + +  A  LF  M E+G + PD+ 
Sbjct: 308 YMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIE-DAFGLFATMQEEG-IQPDRI 365

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   + ACA     S  ++ H+ + + G  +D+ ++ +L+H YA CG +  A +VFD M
Sbjct: 366 TYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM 425

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             R +VSW+ MI A+V+ G  + A + F  M+    EPD  T+ ++ +AC  L  L LGM
Sbjct: 426 SRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGM 485

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             +   ++     LV+ + V N+LI+M  K GS++ AR +FE+M +RD+ +WN +I G++
Sbjct: 486 EIYTQAIKA---DLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYS 542

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           LHG A  AL  FDR++ +E F PNS+TFVGVLSAC+  G V EGR +F  +++   I P 
Sbjct: 543 LHGNAREALDLFDRML-KERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPT 601

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +E YGC+VDLL RAG +DEA  L++ MP+KP++ IW +LL A C+ + ++ ++E  A++ 
Sbjct: 602 MELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLL-AACRIYGNLDVAERAAERC 660

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           + SE      VYV LS +YA+A  W +V  VRK+M  +GV KE GC+ IE++G  H F  
Sbjct: 661 LMSEP-YDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVV 719

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D SHPQ  +IY  L  +   +K  GY P  +Q  + +  +  K+ ++  HSE+LAIA G
Sbjct: 720 EDRSHPQAGEIYAELARLMTAIKREGYIP-VTQNVLHNVGEQEKEEAISYHSEKLAIAYG 778

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +L+L  G PIR+FKNLRVC DCH  +K IS++   EII RD +RFHHFK+G CSC DYW
Sbjct: 779 VLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 188/368 (51%), Gaps = 12/368 (3%)

Query: 54  AQALRTALPQQHKTLLIY--SRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
            + +R  + Q  + L IY  + +I   S   ++  A + F  +EN    TWN +I   A+
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
               K +A  LF++M+++  + P   TF   L AC+       GK+ HA + K G VSD 
Sbjct: 140 LGHVK-EAFALFRQMVDEA-MEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDF 197

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
            I  +L+  Y   G +D A +VFD + +R + ++NVMI  + + G+ + A +LF RMQ  
Sbjct: 198 RIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQE 257

Query: 231 -FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
            F+P+  +F SI   C+    L+ G   HA  +   +  LV DV V  +LI MY  CGS+
Sbjct: 258 GFKPNRISFLSILDGCSTPEALAWGKAVHAQCM---NTGLVDDVRVATALIRMYMGCGSI 314

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + AR+VF+ M  RD+ SW  +I G+A +   E A   F  +  EE   P+ IT++ +++A
Sbjct: 315 EGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATM-QEEGIQPDRITYIHIINA 373

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C     +S  R+    ++     T +L     LV + A+ G I +A  +   M  + D V
Sbjct: 374 CASSADLSLAREIHSQVVRAGFGTDLLVDT-ALVHMYAKCGAIKDARQVFDAMS-RRDVV 431

Query: 410 IWRSLLDA 417
            W +++ A
Sbjct: 432 SWSAMIGA 439



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 184/390 (47%), Gaps = 40/390 (10%)

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           +  R+ E  N + D  T+    + C  L     GKQ   HI + G   ++Y  N+LI  +
Sbjct: 48  VLHRLGEGSNHI-DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLH 106

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQ 239
           + CG++  A + FD++  +++V+WN +I  + Q G    A  LFR+M     EP   TF 
Sbjct: 107 SICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFL 166

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
            +  AC+  A L LG   HA +++      V+D  +  +L+ MY K GS+D ARQVF+ +
Sbjct: 167 IVLDACSSPAGLKLGKEFHAQVIK---VGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
            KRD++++N +I G+A  G  E A + F R+  +E F PN I+F+ +L  C+    ++ G
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRM-QQEGFKPNRISFLSILDGCSTPEALAWG 282

Query: 360 RDYFDVMINEYNI------TPVLEHY-GC-----------------------LVDLLARA 389
           +      +N   +      T ++  Y GC                       ++   A  
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAEN 342

Query: 390 GNIDEALHLVSNMP---MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            NI++A  L + M    ++PD + +  +++AC    A + L+ E+  QV+ +  G    V
Sbjct: 343 SNIEDAFGLFATMQEEGIQPDRITYIHIINACASS-ADLSLAREIHSQVVRAGFGTDLLV 401

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
              L  +YA      D   V   M+ + V 
Sbjct: 402 DTALVHMYAKCGAIKDARQVFDAMSRRDVV 431


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/574 (42%), Positives = 345/574 (60%), Gaps = 21/574 (3%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRII---HFASFADLDYAFRVFYQIENPNSFTWN 102
           M+ + ++HA+ L+T     H   L   R++     ++ A L YA  +F  I  P++F +N
Sbjct: 1   MNHIYKLHARLLKTG---HHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFN 57

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           T+IRA A   D+ P   +     +    V PD  TFPF LKACA L     G   H+ +F
Sbjct: 58  TIIRAHA---DSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACARL---QTGLDLHSLLF 111

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G  SDVY+ N LIHFY  CG LD A KVF+ M ER LVSW+ MI  F + G    AL 
Sbjct: 112 KLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALA 171

Query: 223 LFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           LF+RMQ++   +PD     S+ SA + L  L LG W   +I R+    L   V +  +L+
Sbjct: 172 LFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRN---GLEFTVSLGTALV 228

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DM+ +CG ++ + +VF+ M +R++ +W ++I G A+HGR+  AL+ F  +     F P+ 
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMR-NHGFQPDH 287

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +TF GVL AC+H G+VSEG   F+ + NEY + P+ EHYGC+VDLL RAG ++EA   V 
Sbjct: 288 VTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVD 347

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
            MP++P+++IWR+LL AC   H  + L+E+V +++ E +     G YVLLS VY    RW
Sbjct: 348 GMPIRPNSIIWRTLLGACV-NHNYIELAEKVKEKINELD-SYHDGDYVLLSNVYGGVGRW 405

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
            +   VR  M +K ++K+PGCS I ++ + HEF AGD +HPQ + I  FL  + + LK  
Sbjct: 406 AEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVV 465

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GYTPD S   + D  ++ K+S+L  HSE+LA+A  +L  K    IRV KNLR+C DCH  
Sbjct: 466 GYTPDISN-VLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCF 524

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K  S +F  EII+RDR RFHHF  GSCSC DYW
Sbjct: 525 MKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/607 (39%), Positives = 352/607 (57%), Gaps = 41/607 (6%)

Query: 41  TECKSMSQLKQIHAQALRTALPQQHKTLLIY-SRIIHFASFADLDYAFRVFYQIENPNSF 99
           T C    +LKQIHA+ L+T L Q    +  + S  I   S   L YA  VF   + P++F
Sbjct: 51  TRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTF 110

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            WN +IR  + S D   ++++L+QRM+   +   + +TFP  LKAC+ L A  +  Q HA
Sbjct: 111 LWNLMIRGFSCS-DEPERSLLLYQRML-CCSAPHNAYTFPSLLKACSNLSALEETTQIHA 168

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD------------------------- 194
            I K G  +DVY  NSLI+ YA+ G+  LA+ +FD                         
Sbjct: 169 QITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDI 228

Query: 195 ------NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
                  M+E++ +SW  MI  +VQ G    AL+LF  MQ    EPD  +  +  SACA 
Sbjct: 229 ALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQ 288

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L  G W H+Y+ +     +  D ++   LIDMY KCG +  A +VF+++ ++ + +W
Sbjct: 289 LGALEQGKWIHSYLTKT---RIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAW 345

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            ++I G+A HG    A+  F  +  +    PN ITF  VL+AC++ G+V EG+  F  M 
Sbjct: 346 TALISGYAYHGHGREAISKFMEMQ-KMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNME 404

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            +YN+ P +EHYGC+VDLL+RAG +DEA   +  MP+KP+AVIW +LL AC + H ++ L
Sbjct: 405 RDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKAC-RIHKNIEL 463

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
            EE+ + +I  +     G YV  + ++A  ++W+     R+LM ++GV K PGCS+I ++
Sbjct: 464 GEEIGEILIAIDP-YHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLE 522

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
           G  HEF AGD SHP+ ++I     ++  KL+  GY P+     +    DD +++ +  HS
Sbjct: 523 GTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHS 582

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           E+LAI  G++  KPG  IR+ KNLRVCKDCH+VTKLIS+I+  +I++RDR RFHHF+DG 
Sbjct: 583 EKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGK 642

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 643 CSCGDYW 649



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 146/319 (45%), Gaps = 37/319 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL + +   ++ +  QIHAQ   T L  ++    + S I  +A+  +   A  +F +I 
Sbjct: 149 SLLKACSNLSALEETTQIHAQI--TKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIP 206

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ-------------------------- 128
            P++ +WN++I+  A++      A+ LF++M+E+                          
Sbjct: 207 KPDAVSWNSVIKGYAKA-GKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFH 265

Query: 129 ----GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
                +V PD  +   AL ACA L A  QGK  H+++ K  +  D  +   LI  YA CG
Sbjct: 266 EMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCG 325

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            +  A +VF N+  +S+ +W  +I  +   G    A+  F  MQ +  +P+  TF ++ +
Sbjct: 326 DMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLT 385

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KR 302
           AC+    +  G      + R  D++L   +     ++D+  + G LD A++  + MP K 
Sbjct: 386 ACSYTGLVEEGKLIFYNMER--DYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKP 443

Query: 303 DLTSWNSIILGFALHGRAE 321
           +   W +++    +H   E
Sbjct: 444 NAVIWGALLKACRIHKNIE 462


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/606 (40%), Positives = 353/606 (58%), Gaps = 54/606 (8%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           PP+P T S    +   +  S N  + L+    + K++S L QIHA   R  L   H  +L
Sbjct: 10  PPSPATGSPPTTSTTHHFISTNRLAVLID---KSKTISHLLQIHAVLFRHGL--DHHPIL 64

Query: 70  IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
            +     +AS   LDY+  +F + +NP+ F W  +I   A   D     +V  Q++ +  
Sbjct: 65  NFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD-----VVSAQQLFD-- 117

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
             +P+K                                       +++  YA  G LD A
Sbjct: 118 -TMPEKSLVSLT---------------------------------AMLTCYAKHGELDAA 143

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL 248
             +FD M ER  V WNVMID + Q G  + AL LFRRM +   +P+  T  S+ SAC  L
Sbjct: 144 RVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQL 203

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             L  G W H+YI    ++ +  +V V  +L+DMY KCGSL+ AR VF+ +  +D+ +WN
Sbjct: 204 GALESGRWVHSYIE---NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWN 260

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+I+G+A+HG ++ AL+ F  +       P +ITF+G+LSAC H G V+EG D F+ M +
Sbjct: 261 SMIVGYAMHGFSQEALQLFKSMC-RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKD 319

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           EY I P +EHYGC+V+LL RAG++++A  LV NM ++PD V+W +LL AC + H  + L 
Sbjct: 320 EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC-RLHGKIALG 378

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           E++ + +++ +    SG Y+LLS +YA+   W+ V  +R +M D GV KEPGCSSIE++ 
Sbjct: 379 EKIVELLVD-QNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 437

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             HEF AG  +HP+ K+IY  L+ I+  LKS GYTP  +   + D  +  K+ SL +HSE
Sbjct: 438 KVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQ-TDIVLHDIGETEKERSLEVHSE 496

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA G++N +PG  I++ KNLRVC DCHEVTKLIS+I   +I+VRDR RFHHF +GSC
Sbjct: 497 KLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSC 556

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 557 SCGDYW 562


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/488 (43%), Positives = 310/488 (63%), Gaps = 12/488 (2%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC----GHLD 187
           LP+K T+PF LKACA +   + GK  H  + K G   +V + N+L+H Y  C    G ++
Sbjct: 7   LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
            A KVFD M +   VSW+ MI  +V+ G    A+ LFR MQI    PD  T  S+ SAC 
Sbjct: 67  FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACT 126

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
           GL  L LG W  +Y+ +     +  +V ++N+LIDM+ KCG +D A  +F SM +R++ S
Sbjct: 127 GLGALELGKWVESYVEKE---RVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS 183

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W S+I G A+HGR   A+  F+ +V     +P+ + F+G+LSAC+H G+V +G+ YFD M
Sbjct: 184 WTSVIGGLAMHGRGVEAVAVFEEMV-RSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +++I P +EHYGC+VD+L RAG + EAL  V  MP+ P+ V+WR+L++AC + H  + 
Sbjct: 243 RKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINAC-RAHGELK 301

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           L E++ +Q+I +E  +    YVLLS +YA    W     +R+ M  KG+ K PG + IE+
Sbjct: 302 LGEKITRQLIRNEP-MHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIEL 360

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           D   +EF AGD SH Q+K+IY  +D + +++K  GY P  ++  ++D  D+ K+ +L  H
Sbjct: 361 DNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEV-LLDIDDEDKEDTLNRH 419

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LAIA  +LN  PG  IR+ KNLRVC DCH  +K IS+I+N EI+VRDR RFHHFK+G
Sbjct: 420 SEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNG 479

Query: 607 SCSCMDYW 614
            CSC D+W
Sbjct: 480 LCSCRDFW 487



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 17/305 (5%)

Query: 40  LTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF-----ASFADLDYAFRVFY 91
           L  C  +  L   K +H   ++     +   + + + ++H           +++A +VF 
Sbjct: 17  LKACAGIGNLNLGKSVHGSVMKFGFGDE---VNVQNTLVHMYCCCRGGEGGIEFARKVFD 73

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   +S +W+ +I    R V     AI LF+ M  +G V PD+ T    L AC  L A 
Sbjct: 74  EMYKSDSVSWSAMIGGYVR-VGRSSDAINLFREMQIKG-VCPDEITMVSVLSACTGLGAL 131

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GK   +++ K  +  +V ++N+LI  +A CG +D A  +F +M ER++VSW  +I   
Sbjct: 132 ELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGL 191

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G    A+ +F  M +    PD   F  + SAC+    +  G      + +  D S+V
Sbjct: 192 AMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRK--DFSIV 249

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDR 329
             +     ++DM C+ G +  A +  + MP   +   W ++I     HG  +   K   +
Sbjct: 250 PKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQ 309

Query: 330 LVVEE 334
           L+  E
Sbjct: 310 LIRNE 314



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 49/292 (16%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
           ++F   + +G   +  +++S L+ C  +  L   K + +   +  +  Q    L  + I 
Sbjct: 101 NLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERV--QKNVELSNALID 158

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACA---RSVDAKPQAIVLFQRMIEQGNVL 132
            FA   D+D A  +F  +   N  +W ++I   A   R V    +A+ +F+ M+  G V 
Sbjct: 159 MFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGV----EAVAVFEEMVRSG-VT 213

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD   F   L AC++     +GK+    + K     D  I   + H+             
Sbjct: 214 PDDVVFIGLLSACSHSGLVDKGKRYFDSMRK-----DFSIVPKIEHY------------- 255

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252
                         M+D   + G    ALK  + M I  +P+   ++++ +AC     L 
Sbjct: 256 ------------GCMVDMLCRAGLVKEALKFVQEMPI--DPNPVVWRTLINACRAHGELK 301

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           LG      ++R+        VL++N    +Y K    +   ++ E+M  + +
Sbjct: 302 LGEKITRQLIRNEPMHESNYVLLSN----IYAKMSDWEKKTRIREAMDMKGM 349


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/613 (38%), Positives = 357/613 (58%), Gaps = 45/613 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIE 94
           ++ + TE  S+   + IH   ++ +       L I + +IHF +S  DLD A+ VF +I 
Sbjct: 137 VIKAATEVSSLLAGQAIHGMVMKASFGSD---LFISNSLIHFYSSLGDLDSAYLVFSKIV 193

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WN++I    +   +  +A+ LF+RM +  N  P++ T    L ACA       G
Sbjct: 194 EKDIVSWNSMISGFVQG-GSPEEALQLFKRM-KMENARPNRVTMVGVLSACAKRIDLEFG 251

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           + A  +I + G+  ++ ++N+++  Y  CG L+ A ++FD M E+ +VSW  MID + + 
Sbjct: 252 RWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKV 311

Query: 215 GEFDSA-------------------------------LKLFRRMQIL--FEPDGYTFQSI 241
           G++D+A                               L +FR +Q+    +P+  T  S 
Sbjct: 312 GDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAST 371

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            +ACA L  + LG W H YI +     +  +  +  SLIDMY KCG L+ A +VF S+ +
Sbjct: 372 LAACAQLGAMDLGGWIHVYIKKQ---GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD+  W+++I G A+HG   AA+  F ++  E    PN++TF  +L AC+H G+V EGR 
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQ-ETKVKPNAVTFTNLLCACSHSGLVDEGRL 487

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +F+ M   Y + P  +HY C+VD+L RAG ++EA+ L+  MP+ P A +W +LL AC + 
Sbjct: 488 FFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGAC-RI 546

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           + +V L+E    +++E++     G YVLLS +YA A +W+ V  +R+ M   G+ KEPGC
Sbjct: 547 YGNVELAEMACSRLLETDSN-NHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGC 605

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           SSIE++GI HEF  GD SHP + +IY  LD I  ++KS GY  D S      E +  K+ 
Sbjct: 606 SSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEH 665

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +L LHSE+LAIA G++ ++P  PIR+ KNLRVC DCH V KLIS+++N +I++RDR RFH
Sbjct: 666 ALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFH 725

Query: 602 HFKDGSCSCMDYW 614
           HF  G+CSCMDYW
Sbjct: 726 HFSGGNCSCMDYW 738



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 233/440 (52%), Gaps = 48/440 (10%)

Query: 12  TPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTL 68
            P + + +I   N  + S  N S++   + +C +   LKQ+HA  LRT L   P     L
Sbjct: 11  VPISSNPTILTANNEQKS--NPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKL 68

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIE 127
                +   +S + LDYA +VF QI  PN +TWNTLIRA A S   KP Q +++F +M+ 
Sbjct: 69  FTACAL---SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASS--PKPIQGLLVFIQMLH 123

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +    P+ +TFPF +KA   + +   G+  H  + K    SD++I+NSLIHFY+S G LD
Sbjct: 124 ESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLD 183

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
            A  VF  ++E+ +VSWN MI  FVQ G  + AL+LF+RM++    P+  T   + SACA
Sbjct: 184 SAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL----------------- 289
               L  G WA  YI R   + +  +++++N+++DMY KCGSL                 
Sbjct: 244 KRIDLEFGRWACDYIER---NGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS 300

Query: 290 --------------DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
                         D AR+VF+ MP+ D+T+WN++I  +  +G+ + AL  F  L + ++
Sbjct: 301 WTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKN 360

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PN +T    L+AC   G +  G  +  V I +  I         L+D+ ++ G++++A
Sbjct: 361 TKPNEVTLASTLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKA 419

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
           L +  ++  + D  +W +++
Sbjct: 420 LEVFYSVERR-DVFVWSAMI 438



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 29/296 (9%)

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG-----HLDLANK 191
           T P  +  CA        KQ HAH+ + GL  D     S    + +C       LD A K
Sbjct: 32  TVPILIDKCANK---KHLKQLHAHMLRTGLFFD---PPSATKLFTACALSSPSSLDYACK 85

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAG 247
           VFD +   +L +WN +I AF    +    L +F  +Q+L E    P+ YTF  +  A   
Sbjct: 86  VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVF--IQMLHESQRFPNSYTFPFVIKAATE 143

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           +++L  G   H  +++    S  +D+ ++NSLI  Y   G LD A  VF  + ++D+ SW
Sbjct: 144 VSSLLAGQAIHGMVMKA---SFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSW 200

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR---DYFD 364
           NS+I GF   G  E AL+ F R+ +E +  PN +T VGVLSAC  R  +  GR   DY +
Sbjct: 201 NSMISGFVQGGSPEEALQLFKRMKMENA-RPNRVTMVGVLSACAKRIDLEFGRWACDYIE 259

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              N  +I  +L +   ++D+  + G++++A  L   M  K D V W +++D   K
Sbjct: 260 R--NGIDINLILSN--AMLDMYVKCGSLEDARRLFDKMEEK-DIVSWTTMIDGYAK 310



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 144/306 (47%), Gaps = 15/306 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           +++L    +C S+   +++  +        + K ++ ++ +I  +A   D D A RVF  
Sbjct: 271 NAMLDMYVKCGSLEDARRLFDK-------MEEKDIVSWTTMIDGYAKVGDYDAARRVFDV 323

Query: 93  IENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +   +   WN LI +  +  + KP +A+ +F+ +    N  P++ T    L ACA L A 
Sbjct: 324 MPREDITAWNALISSYQQ--NGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAM 381

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G   H +I K+G+  + +I  SLI  Y+ CGHL+ A +VF ++  R +  W+ MI   
Sbjct: 382 DLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGL 441

Query: 212 VQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G   +A+ LF +MQ    +P+  TF ++  AC+    +  G      +     + +V
Sbjct: 442 AMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQM--RPVYGVV 499

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAEAALKYFDR 329
                   ++D+  + G L+ A ++ E MP     S W +++    ++G  E A     R
Sbjct: 500 PGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSR 559

Query: 330 LVVEES 335
           L+  +S
Sbjct: 560 LLETDS 565


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/648 (39%), Positives = 362/648 (55%), Gaps = 49/648 (7%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           MAVA++  G P     +    +++    + +   SLL+S   C +  +  ++HA  LRT 
Sbjct: 260 MAVAVLPTGAPATARDAGGGHHHHGAVLTADRAVSLLTS---CSTARRAAELHAAVLRTG 316

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
           L       + +     +A+   LD +  +  +  +P +  + + I A +      P A+ 
Sbjct: 317 LLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLP-ALA 375

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           L   M+ QG +LP  HT   +L AC  L   S G+  H + FK  L  D Y+  +L+  Y
Sbjct: 376 LLSDMLAQG-LLPTAHTLSASLPACRGL---SPGRALHGYAFKLALAGDSYVATALLGMY 431

Query: 181 ASCGHLDLANKVFDNMLE-----------------------RSL---------VSWNVMI 208
           A  G    A  +FD+ML                        RSL         V WN MI
Sbjct: 432 ARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMI 491

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           D + Q G  + AL+LFRRM     EPD  T   + SA A L T+  G W H+Y+      
Sbjct: 492 DGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYV--KNSR 549

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            +   V V  +LIDMYCKCGSL  A  VF  +  +D+  WN++I G+A+HG +  AL+ F
Sbjct: 550 RVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            +   E+   P  ITF+G+L+AC+H GMV EGR++F  M  EY I P +EHYGC+VDLL 
Sbjct: 610 VQ-SREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLG 668

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG I EA  LV +M + PDAV+W SLL A C+ H ++ L +++A  ++ ++G   SG+Y
Sbjct: 669 RAGLIKEAFCLVQSMKITPDAVMWVSLL-AACRLHKNMSLGQQIADYLV-AKGLANSGMY 726

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +LLS +YA+   W +V  VR +M   G+ KEPGCSSIEID   +EF AGD SHP+T +IY
Sbjct: 727 ILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIY 786

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIR 566
             LD ++  +K  G+ P      ++ +LD+  K+ +L +HSE+LA+A G+++ +PG  I+
Sbjct: 787 VMLDKMNGLVKEHGHVP--QTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIK 844

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + KNLR C DCH V KLISRI   +I+ RDR RFHHF DGSCSC DYW
Sbjct: 845 IVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/608 (39%), Positives = 357/608 (58%), Gaps = 18/608 (2%)

Query: 14  QTHSHSIFNNNRNEGSFN---NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQH--KTL 68
           Q+H  S+ N+       N   N    LS L  CKSM + K++HA  L+  L       + 
Sbjct: 9   QSHLLSLPNSPLQSSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSN 68

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           L+ S     + +  ++YA  +F QIE P SF +NT+IR    S+D + +A++L+  M+E+
Sbjct: 69  LVAS--CALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLE-EALLLYVEMLER 125

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G + PD  T+PF LKAC+ L A  +G Q HAH+F  GL  DV++ N LI  Y  CG ++ 
Sbjct: 126 G-IEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEH 184

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACA 246
           A  VF+ M E+S+ SW+ +I A      +   L L   M  +     +     S  SAC 
Sbjct: 185 AGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACT 244

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L + +LG   H  +LR+       +V+V  SLIDMY KCGSL+    VF++M  ++  S
Sbjct: 245 HLGSPNLGRCIHGILLRNISE---LNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYS 301

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +  +I G A+HGR   AL+ F  ++ EE  +P+ + +VGVLSAC+H G+V EG   F+ M
Sbjct: 302 YTVMIAGLAIHGRGREALRVFSDML-EEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRM 360

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             E+ I P ++HYGC+VDL+ RAG + EA  L+ +MP+KP+ V+WRSLL A CK H ++ 
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSA-CKVHHNLE 419

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           + E  A  + +       G Y++L+ +YA A++W +V  +R  M +K + + PG S +E 
Sbjct: 420 IGEIAADNIFKLNKH-NPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEA 478

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           +   ++F + D S PQ + IY  +  ++ +LK  GYTPD SQ  ++D  +D K+  L+ H
Sbjct: 479 NRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQ-VLLDVDEDEKRQRLKHH 537

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           S++LAIA  ++    G P+R+ +NLR+C DCH  TK IS I+  EI VRD  RFHHFKDG
Sbjct: 538 SQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDG 597

Query: 607 SCSCMDYW 614
           +CSC DYW
Sbjct: 598 TCSCKDYW 605


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/574 (42%), Positives = 344/574 (59%), Gaps = 21/574 (3%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRII---HFASFADLDYAFRVFYQIENPNSFTWN 102
           M+ + ++HA+ L+T     H   L   R++     ++ A L YA  +F  I  P++F +N
Sbjct: 1   MNHIYKLHARLLKTG---HHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFN 57

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           T+IRA A   D+ P   +     +    V PD  TFPF LKACA L     G   H+ +F
Sbjct: 58  TIIRAHA---DSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACARL---QTGLDLHSLLF 111

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G  SDVY+ N LIHFY  CG LD A K F+ M ER LVSW+ MI  F + G    AL 
Sbjct: 112 KLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALA 171

Query: 223 LFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           LF+RMQ++   +PD     S+ SA + L  L LG W   +I R+    L   V +  +L+
Sbjct: 172 LFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRN---GLEFTVSLGTALV 228

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DM+ +CG ++ + +VF+ M +R++ +W ++I G A+HGR+  AL+ F  +     F P+ 
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMR-NHGFQPDH 287

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +TF GVL AC+H G+VSEG   F+ + NEY + P+ EHYGC+VDLL RAG ++EA   V 
Sbjct: 288 VTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVD 347

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
            MP++P+++IWR+LL AC   H  + L+E+V +++ E +     G YVLLS VY    RW
Sbjct: 348 GMPIRPNSIIWRTLLGACV-NHNYIELAEKVKEKINELD-SYHDGDYVLLSNVYGGVGRW 405

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
            +   VR  M +K ++K+PGCS I ++ + HEF AGD +HPQ + I  FL  + + LK  
Sbjct: 406 AEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVV 465

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GYTPD S   + D  ++ K+S+L  HSE+LA+A  +L  K    IRV KNLR+C DCH  
Sbjct: 466 GYTPDISN-VLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCF 524

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K  S +F  EII+RDR RFHHF  GSCSC DYW
Sbjct: 525 MKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558


>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 330

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/331 (64%), Positives = 256/331 (77%), Gaps = 6/331 (1%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           MA+AI+Q  P    T S    NN+ N+    +H+ LL  L +CK MSQLKQIHAQALR+ 
Sbjct: 3   MAMAIIQSPPLRILTSSKP--NNSLNQ----HHAHLLGYLNDCKDMSQLKQIHAQALRST 56

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
           LP    +L +YS+I+HF+SF DLDYA+R+F + +NPN+F WNTLIRACARS D K Q+ +
Sbjct: 57  LPDSPHSLFLYSKILHFSSFNDLDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFL 116

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           L++RMIEQG VLPDKHT+PF LKACAYLFA ++GKQ HA + K G  SDVYINNSLIHFY
Sbjct: 117 LYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFY 176

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240
           ASCG  + A  VFD M  RSLVSWN MIDA VQFGEFD+ALKLF ++Q LFEPDGYT QS
Sbjct: 177 ASCGCSEPAQYVFDKMPARSLVSWNAMIDALVQFGEFDAALKLFVQLQELFEPDGYTMQS 236

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + +ACAGL  LSLGMW HAY+LR  D  +  DVLV+N L+DMYCKCGSLDIA QVFE M 
Sbjct: 237 VLNACAGLCALSLGMWVHAYMLRKFDVEVTLDVLVDNCLLDMYCKCGSLDIAMQVFERMH 296

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           KRD+TSWNS+ILGFA+HG+AE   +YFD +V
Sbjct: 297 KRDITSWNSMILGFAMHGKAELTFEYFDCMV 327



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 138/272 (50%), Gaps = 15/272 (5%)

Query: 152 SQGKQAHAHIFKRGLVSD---VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
           SQ KQ HA   +  L      +++ + ++HF +S   LD A ++F      +   WN +I
Sbjct: 43  SQLKQIHAQALRSTLPDSPHSLFLYSKILHF-SSFNDLDYAYRLFSKFDNPNAFMWNTLI 101

Query: 209 DAFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            A  + +   + +  L++RM  Q    PD +T+  +  ACA L  L+ G   HA +L+H 
Sbjct: 102 RACARSYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKH- 160

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                +DV +NNSLI  Y  CG  + A+ VF+ MP R L SWN++I      G  +AALK
Sbjct: 161 --GFESDVYINNSLIHFYASCGCSEPAQYVFDKMPARSLVSWNAMIDALVQFGEFDAALK 218

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLV 383
            F +L  +E F P+  T   VL+AC     +S G      M+ ++++   L+     CL+
Sbjct: 219 LFVQL--QELFEPDGYTMQSVLNACAGLCALSLGMWVHAYMLRKFDVEVTLDVLVDNCLL 276

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           D+  + G++D A+ +   M  K D   W S++
Sbjct: 277 DMYCKCGSLDIAMQVFERMH-KRDITSWNSMI 307



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 33/163 (20%)

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFAL-HGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           LD A ++F      +   WN++I   A  + R E +   + R++ + +  P+  T+  VL
Sbjct: 79  LDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVL 138

Query: 348 SACNHRGMVSEGRDYF----------DVMINE------------------YNITPV--LE 377
            AC +   ++EG+             DV IN                   ++  P   L 
Sbjct: 139 KACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSEPAQYVFDKMPARSLV 198

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMP--MKPDAVIWRSLLDAC 418
            +  ++D L + G  D AL L   +    +PD    +S+L+AC
Sbjct: 199 SWNAMIDALVQFGEFDAALKLFVQLQELFEPDGYTMQSVLNAC 241


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/603 (40%), Positives = 356/603 (59%), Gaps = 17/603 (2%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSR 73
           S  +F   R  G   NH +    L  C   ++ S  K +H   L+T        L +   
Sbjct: 126 SLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMD---LYVGVG 182

Query: 74  IIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           ++  +  F D +   RVF ++   +   W+ +I   A+S  ++ +A+ LF +M  +  VL
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSR-EAVELFGQM-RRAFVL 240

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P++ TF   L++CA +     GKQ H H+ K GL  +V+++N+L+  YA CG LD + K+
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
           F  +  R+ V+WN MI  +VQ G+ D AL L++ M +   +    T+ S+  ACA LA +
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            LG   H+  L+        DV+V N+LIDMY KCGS+  AR VF+ + +RD  SWN++I
Sbjct: 361 ELGTQIHSLSLKTIYDK---DVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMI 417

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+++HG    ALK F +++ E    PN +TFV +LSAC++ G++  G++YF  M+ +Y 
Sbjct: 418 SGYSMHGLVGEALKAF-QMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYG 476

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P +EHY C+V LL R+G++D+A+ L+  +P++P+  +WR+LL AC   H  V L    
Sbjct: 477 IEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVI-HNDVDLGIMS 535

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+Q+++ +       +VLLS +YA  RRWN V  VRK M +KGV KEPG S IE  GI H
Sbjct: 536 AQQILQIDPQD-EATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVH 594

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F  GDTSHP  K I G L+ ++ K +  GY PD + A + D  DD K+  L +HSERLA
Sbjct: 595 YFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLN-AVLRDVEDDEKKRHLWVHSERLA 653

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           +A G++       IR+ KNLR+C DCH   KLIS+I   +II+RD  RFHHF+DG CSC 
Sbjct: 654 LAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCG 713

Query: 612 DYW 614
           DYW
Sbjct: 714 DYW 716



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 159/321 (49%), Gaps = 11/321 (3%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           N+ ++ TLI+   +S     + + LF R+  +G+ L +   F   LK    +        
Sbjct: 5   NTVSFVTLIQGYVQSFQLD-EVVDLFSRVHREGHEL-NPFVFTTILKLLVSVECAELAYS 62

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HA I+K G  S+ ++  +LI  YA CG ++ A + FD +  + +VSW  M+  + +   
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           F  +L+LF  M+++ F P+ +TF  +  AC GL   S+G   H  +L+ C      D+ V
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYE---MDLYV 179

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
              L+D+Y K G  +   +VFE MPK D+  W+ +I  +A   ++  A++ F ++    +
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQM--RRA 237

Query: 336 FS-PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           F  PN  TF  VL +C     +  G+      + +  +   +     L+D+ A+ G +D 
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQ-VHCHVLKVGLDGNVFVSNALMDVYAKCGRLDN 296

Query: 395 ALHLVSNMPMKPDAVIWRSLL 415
           ++ L   +P + + V W +++
Sbjct: 297 SMKLFMELPNR-NEVTWNTMI 316


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 20/574 (3%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD---LDYAFRVFYQIENPNSFTWN 102
           M + KQ+HAQ L+       +     S ++   + +D   +DYA  +F QI+ P +F +N
Sbjct: 1   MEEFKQVHAQVLKW------ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFN 54

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           T+IR     ++ +  A+ L+  M+E+G V  D  T+P   KACA L +  +G Q H +IF
Sbjct: 55  TMIRGYVNVMNME-NALFLYYEMLERG-VESDNFTYPALFKACASLRSIEEGMQIHGYIF 112

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           KRGL  D+++ NSLI+ Y  CG ++L+  VF++M  R + SW+ +I A    G +   L 
Sbjct: 113 KRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLS 172

Query: 223 LFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           +F  M  +    P+     S+ SAC  L  L LG   H  +LR+       +V+V  SLI
Sbjct: 173 VFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIRE---MNVIVQTSLI 229

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG ++    +F+ M K++  S++ +I G A+HGR   AL+ F  ++ EE   P+ 
Sbjct: 230 DMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDML-EEGLKPDD 288

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           + ++GVLSACNH G+V EG   F+ M  E+ I P ++HYGC+V L+ RAG +++AL  + 
Sbjct: 289 VVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIR 348

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
           +MP+KP+ V+WR LL AC K H ++ + E  AK + E       G YV+LS +YA A+RW
Sbjct: 349 SMPIKPNEVVWRGLLSAC-KFHHNLEIGEIAAKSLGELNSSN-PGDYVVLSNMYARAKRW 406

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
            DV  +R  M  KG T+ PG S ++++   ++F + D SHPQ K +Y  +  ++ +LK  
Sbjct: 407 EDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFE 466

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY+PD SQ  + D  ++ K+  L+ HS++LA+A  +++   G PIR+ +NLR+C DCH  
Sbjct: 467 GYSPDTSQV-LFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTY 525

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           TKLIS I+  EI VRDR RFHHFKDG+CSC DYW
Sbjct: 526 TKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/631 (37%), Positives = 357/631 (56%), Gaps = 62/631 (9%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-----DYAFRVF 90
           L   +  C+++  L QIHA  +++    Q +  L  + I+ F + +DL     DYA ++F
Sbjct: 26  LFPQINNCRTIRDLSQIHAVFIKSG---QMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            Q+   N F+WNT+IR  + S + K   AI LF  M+    V P++ TFP  LKACA   
Sbjct: 83  NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---------------------- 187
              +GKQ H    K G   D ++ ++L+  Y  CG +                       
Sbjct: 143 KIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRR 202

Query: 188 -----------------------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                                   A  +FD M +RS+VSWN MI  +   G F  A+++F
Sbjct: 203 KRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVF 262

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           R M+     P+  T  S+  A + L +L LG W H Y     D  +  D ++ ++LIDMY
Sbjct: 263 REMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAE---DSGIRIDDVLGSALIDMY 319

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG ++ A  VFE +P+ ++ +W+++I GFA+HG+A  A+  F ++  +    P+ + +
Sbjct: 320 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR-QAGVRPSDVAY 378

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           + +L+AC+H G+V EGR YF  M++   + P +EHYGC+VDLL R+G +DEA   + NMP
Sbjct: 379 INLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           +KPD VIW++LL AC +   +V + + VA  +++      SG YV LS +YAS   W++V
Sbjct: 439 IKPDDVIWKALLGAC-RMQGNVEMGKRVANILMDMVPHD-SGAYVALSNMYASQGNWSEV 496

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             +R  M +K + K+PGCS I+IDG+ HEF   D SHP+ K+I   L  I +KL+  GY 
Sbjct: 497 SEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYR 556

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           P  +Q  +  E +D K++ L  HSE++A A G+++  PG PIR+ KNLR+C+DCH   KL
Sbjct: 557 PITTQVLLNLEEED-KENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKL 615

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS+++  +I VRDR RFHHF+DGSCSCMDYW
Sbjct: 616 ISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/608 (39%), Positives = 344/608 (56%), Gaps = 19/608 (3%)

Query: 16  HSHSI-----FNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKT 67
           H H++     +   R++G   N ++ LS L  C   K++   K IH+             
Sbjct: 308 HGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG--HSSDV 365

Query: 68  LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            +  + I  +A   DL  A  +FY +   +  +WN +I   AR  D + +A+ L+++M  
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED-RGEAMRLYKQMQS 424

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +G V P + TF   L ACA   A++ GK  H  I + G+ S+ ++ N+L++ Y  CG L 
Sbjct: 425 EG-VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLM 483

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACA 246
            A  VF+    R ++SWN MI    Q G +++A KLF+ MQ    EPD  TF S+ S C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
               L LG   H  I    +  L  DV + N+LI+MY +CGSL  AR VF S+  RD+ S
Sbjct: 544 NPEALELGKQIHGRI---TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS 600

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W ++I G A  G    A++ F ++  E    P+  TF  +LSACNH G+V EG   F  M
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSM 660

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
            +EY + P +EHYGCLV LL RA    EA  L++ MP  PDA +W +LL A C+ H ++ 
Sbjct: 661 ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGA-CRIHGNIA 719

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           L+E  A   ++        VY+LLS VYA+A RW+DV  +R++M  +G+ KEPG S IE+
Sbjct: 720 LAEHAANNALKLNAR-NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 778

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           D I HEF A D SHP+T +IY  L  +  +++  GY PD +Q  + D     +++SL  H
Sbjct: 779 DNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPD-TQHVLHDLGKAHQETSLCTH 837

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SERLAIA G++   PG PIR+FKNLR+C DCH  +K IS++   EII RD  RFH FK+G
Sbjct: 838 SERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNG 897

Query: 607 SCSCMDYW 614
            CSC DYW
Sbjct: 898 KCSCEDYW 905



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 204/408 (50%), Gaps = 30/408 (7%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   +N G   N  + +S LT C S ++L   K+IH+Q ++     Q    +  S +  
Sbjct: 115 LFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGY--QRDPRVQNSLLSM 172

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL  A +VF  I   +  ++NT++   A+    K + + LF +M  +G + PDK 
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVK-ECLGLFGQMSSEG-ISPDKV 230

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L A        +GK+ H    + GL SD+ +  +L+     CG +D A + F  +
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI 290

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY-----TFQSITSACAGLATL 251
            +R +V +N +I A  Q G    A + + RM+     DG      T+ SI +AC+    L
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRMR----SDGVALNRTTYLSILNACSTSKAL 346

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             G   H++I     HS  +DV + N+LI MY +CG L  AR++F +MPKRDL SWN+II
Sbjct: 347 EAGKLIHSHISED-GHS--SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAII 403

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+A       A++ + ++   E   P  +TF+ +LSAC +    ++G+     MI+E  
Sbjct: 404 AGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLLSACANSSAYADGK-----MIHEDI 457

Query: 372 ITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +   ++  G     L+++  R G++ EA ++      + D + W S++
Sbjct: 458 LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMI 504



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 186/389 (47%), Gaps = 13/389 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +LL + T  + + + K+IHAQ +   + P    + L+ +  +   S  D   A +VF ++
Sbjct: 32  ALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD---AHQVFKEM 88

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +  +WN+LI +C      K +A  LF+ M   G  +P+K T+   L AC        
Sbjct: 89  PRRDVISWNSLI-SCYAQQGFKKKAFQLFEEMQNAG-FIPNKITYISILTACYSPAELEN 146

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK+ H+ I K G   D  + NSL+  Y  CG L  A +VF  +  R +VS+N M+  + Q
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                  L LF +M      PD  T+ ++  A    + L  G   H   +   +  L +D
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV---EEGLNSD 263

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + V  +L+ M  +CG +D A+Q F+ +  RD+  +N++I   A HG    A + + R+  
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRM-R 322

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +  + N  T++ +L+AC+    +  G+      I+E   +  ++    L+ + AR G++
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDL 381

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            +A  L   MP K D + W +++    ++
Sbjct: 382 PKARELFYTMP-KRDLISWNAIIAGYARR 409



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 143/285 (50%), Gaps = 7/285 (2%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D+ T+   L+ C       + K+ HA + + G+  D++++N LI+ Y  C  +  A++VF
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLS 252
             M  R ++SWN +I  + Q G    A +LF  MQ   F P+  T+ SI +AC   A L 
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H+ I++        D  V NSL+ MY KCG L  ARQVF  +  RD+ S+N+++ 
Sbjct: 146 NGKKIHSQIIK---AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            +A     +  L  F ++   E  SP+ +T++ +L A     M+ EG+    + + E  +
Sbjct: 203 LYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GL 260

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              +     LV +  R G++D A      +  + D V++ +L+ A
Sbjct: 261 NSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAA 304


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/552 (42%), Positives = 336/552 (60%), Gaps = 9/552 (1%)

Query: 65  HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           H+ ++ Y+ +I  +AS   ++ A ++F +I   +  +WN +I     + + K +A+ L++
Sbjct: 128 HRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFK-EALELYK 186

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            M++  NV PD+ T    + ACA   +   G+Q H+ I   G  S++ I N LI  Y+ C
Sbjct: 187 DMMKT-NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC 245

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSIT 242
           G ++ A  +F  + ++ ++SWN +I        +  AL LF+ M    E P+  T  S+ 
Sbjct: 246 GEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 305

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            ACA L  + +G W H YI +          L+  SLIDMY KCG ++ A+QVF+SM  R
Sbjct: 306 PACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT-SLIDMYAKCGDIEAAKQVFDSMLTR 364

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            L+SWN++I GFA+HG+A AA   F ++  +    P+ ITFVG+LSAC+H GM+  GR  
Sbjct: 365 SLSSWNAMIFGFAMHGKANAAFDLFSKMR-KNGIDPDDITFVGLLSACSHSGMLDLGRHI 423

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M  +Y ITP LEHYGC++DLL   G   EA  ++  MPM+PD VIW SLL AC K H
Sbjct: 424 FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKAC-KMH 482

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            +V L E  A+ +I+ E     G YVLLS +YA+A RW+ V  +R L+ DKG+ K PGCS
Sbjct: 483 NNVELGESYAQNLIKIEPE-NPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCS 541

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
           SIEID + HEF  GD  HP+ ++IY  L+ ++  ++  G+ PD S+     E ++ K+ +
Sbjct: 542 SIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEME-EEWKEGA 600

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           LR HSE+LAIA G+++ KPG  + + KNLRVC++CHE TKLIS+I+  EII RDR R H 
Sbjct: 601 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHL 660

Query: 603 FKDGSCSCMDYW 614
            KDG  SC DYW
Sbjct: 661 LKDGVWSCHDYW 672



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 182/357 (50%), Gaps = 41/357 (11%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F  L YA  +F  I+ PN   WNT+ R  A + D+   A+ L+  MI  G +LP+ ++FP
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDS-VTALKLYVCMISLG-LLPNSYSFP 69

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           F LK+CA   A  +G+Q H H+ K G   D+Y+N SLI  YA  G L+ A+KVFD    R
Sbjct: 70  FLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR 129

Query: 200 -------------------------------SLVSWNVMIDAFVQFGEFDSALKLFR-RM 227
                                           +VSWN MI  +V+   F  AL+L++  M
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +   +PD  T  ++ SACA   ++ LG   H++I    DH   +++ + N LID+Y KCG
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIE---DHGFGSNIKIVNVLIDLYSKCG 246

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ A  +F+ + K+D+ SWN++I G       + AL  F  + +    SPN +T + VL
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEM-LRSGESPNDVTMLSVL 305

Query: 348 SACNHRGMVSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            AC H G +  GR +  V IN+    +T        L+D+ A+ G+I+ A  +  +M
Sbjct: 306 PACAHLGAIDIGR-WIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 361


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/612 (38%), Positives = 365/612 (59%), Gaps = 24/612 (3%)

Query: 11  PTPQTHSHSIFNNNRNEGSFN--NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
           P+P+ H     N+N N  S    +   ++S L   + ++Q+  IHAQ +R    Q     
Sbjct: 19  PSPKPHP----NSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQD--PF 72

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           +++  +   +    +DYA R+F    NPN + +  LI     S +   +AI L+ RM+ +
Sbjct: 73  MVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYL-EAIQLYSRMLHE 131

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            ++LPD +     LKAC    A  +G++ H+   K G  S+  +   ++  Y  CG L  
Sbjct: 132 -SILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 190

Query: 189 ANKVFDNMLE----RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
           A +VF+ M E    +  V W  MID FV+  E + AL+ FR MQ     P+ +T   + S
Sbjct: 191 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           AC+ L  L +G W H+Y+ +     +  ++ V N+LI+MY +CGS+D A+ VF+ M  RD
Sbjct: 251 ACSQLGALEIGRWVHSYMRKF---EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 307

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + ++N++I G +++G++  A++ F R++V     P ++TFVGVL+AC+H G+V  G + F
Sbjct: 308 VITYNTMISGLSMNGKSRQAIELF-RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIF 366

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M  +Y + P +EHYGC+VDLL R G ++EA  L+  M M PD ++  +LL AC K H 
Sbjct: 367 HSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC-KMHK 425

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           ++ L E+VAK+ +E  G   SG YVLLS VYAS+ +W +   VR  M + G+ KEPGCSS
Sbjct: 426 NLELGEQVAKE-LEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSS 484

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSS 542
           IE++   HEF  GD  HPQ ++IY  L+ ++  L+  GY P+  +  ++ +++DG K+ +
Sbjct: 485 IEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPE--KEVVLQDIEDGEKEWA 542

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L +HSERLAI  G+++ +P   IRV KNLRVC DCH   KLI++I   +I+VRDR RFH+
Sbjct: 543 LAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHY 602

Query: 603 FKDGSCSCMDYW 614
           F++G+CSC DYW
Sbjct: 603 FENGACSCGDYW 614


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/593 (42%), Positives = 352/593 (59%), Gaps = 28/593 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-----LDYAFRVF 90
           +LS L  C S+  L Q+HA A++  L   H  L+  +R++   +  D     L YA +VF
Sbjct: 28  VLSHLPHCTSLRTLAQLHAAAVKAGL-AAHPALV--TRLLTLCTGPDAGPAHLAYARQVF 84

Query: 91  YQIENPNSFTW-NTLIRACARSVDAKPQ----AIVLFQRMIEQGNVLPDKHTFPFALKAC 145
            ++ +P    W NTL+R  ARS +        A+ +F RM+E+G V PD +TF   LKAC
Sbjct: 85  DRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEG-VAPDTYTFVSLLKAC 143

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A  +G+QAHA   K G     Y+  +LI+ YA CG    A  +F       +VS+N
Sbjct: 144 AAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYN 203

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI A V+      AL LFR MQ    +P   T  S+ SACA L  L LG W H Y+ + 
Sbjct: 204 AMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKI 263

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              SLV    V+ +LIDMY KCGSL+ A  VF+ M  +D  +W+ +I+ +A HG    A+
Sbjct: 264 GLGSLVK---VSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAI 320

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F+ +  +E   P+ ITF+GVL AC+H G+VSEG  YFD M  ++ I P ++HYGC+ D
Sbjct: 321 SLFEEMK-KEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGIVPGIKHYGCVTD 378

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI---ESEGG 441
           LLAR+G ++ A   +  +P+ P  ++WR+LL AC   H    L + V ++++   +S GG
Sbjct: 379 LLARSGQLERAYKFIDELPINPTPILWRTLLSAC-GGHGDFELGKRVFERILKLDDSHGG 437

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
                YV+ S + A+   W ++ +VRKLM++KGV K PGCSSIEID   HEFFAGD  HP
Sbjct: 438 D----YVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHP 493

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           ++++    +D + ++LK  GY P+ S    V+  ++ K  SL+ HSE+LAIA G+LN  P
Sbjct: 494 KSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAP 553

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  +RV KNLRVC DCH + KL+S +FN  II+RD  RFHHF++G CSC DYW
Sbjct: 554 GATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/567 (42%), Positives = 347/567 (61%), Gaps = 24/567 (4%)

Query: 58   RTALPQQHKTLLIYSRIIHFASF--ADLDYAFRVFYQI--ENP-NSFTWNTLIRACARSV 112
            R  +P  H  LL    + H A+     L YA  V  ++    P + F  NT++R  A S 
Sbjct: 728  RAGVPTSHP-LLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGS- 785

Query: 113  DAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
              +P+ A+ L +R +     LPD HT+P  ++ACA L A  +G+  HA   K G V+ V+
Sbjct: 786  -PRPRVALELHRRRL----ALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVF 840

Query: 172  INNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-Q 228
            + NSL+H Y +CG  + A+KVFD M    R+LVSWN M+++F   G  +  L +F  M  
Sbjct: 841  VQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLG 900

Query: 229  ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
            + F PDG+T  S+ +ACA    L+LG   H Y+ +     LV +  V+N+LID+Y KCGS
Sbjct: 901  VDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKV---GLVENSHVSNALIDLYAKCGS 957

Query: 289  LDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ AR++FE M   R + SW S+I+G A +G  + AL+ F  L+  E   P  IT VGVL
Sbjct: 958  VNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFS-LMEREKLVPTEITMVGVL 1016

Query: 348  SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
             AC+H G+V +G  YFD M  +Y I+P +EH GC+VDLL RAG ++EA   +  MP++P+
Sbjct: 1017 YACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPN 1076

Query: 408  AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
            AV+WR+LL +C   H  + L +   ++++E + G  SG YVLLS +YA+   W DV ++R
Sbjct: 1077 AVVWRTLLGSCAM-HKKLELGKVAWERLVELDPG-HSGDYVLLSNLYAAVGMWADVHVLR 1134

Query: 468  KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
            K M    V K PG S +E+    +EF  GD SHP+++QIY  L  I E+L+  GY P  S
Sbjct: 1135 KTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTS 1194

Query: 528  QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
               + D  ++ K+++L  HSERLAIA  +L   PG+PIR+ KNLR+C DCH    LIS++
Sbjct: 1195 NV-LADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKV 1253

Query: 588  FNVEIIVRDRARFHHFKDGSCSCMDYW 614
            ++ EIIVRDR+RFHHF+ G+CSC DYW
Sbjct: 1254 YDREIIVRDRSRFHHFQGGACSCKDYW 1280


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 354/613 (57%), Gaps = 46/613 (7%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ-IEN 95
           LS L +C +  +LKQIHA+ L++ L Q    +     +    S +   YA  VF+   + 
Sbjct: 15  LSCLQKCPTEVELKQIHARMLKSGLLQDPYAMT--KFLSFCLSSSFSSYAHDVFFNGFDR 72

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P++F WN +IR  + S D   ++++L+ RM+   +   + +TFPF LKAC+ L AF +  
Sbjct: 73  PDTFLWNLMIRGLSCS-DQPDRSLLLYHRML-CCSAPHNAYTFPFLLKACSNLSAFQETT 130

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HAHI K G   D+Y  NSLI+ YA  G+   A+ +FD + E   VSWN +I  +V+ G
Sbjct: 131 QIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAG 190

Query: 216 EFDSALKLFRRM--------------------------QILFE-------PDGYTFQSIT 242
           E D AL LFR+M                          Q+  E       PD  +  S  
Sbjct: 191 EMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASAL 250

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           SAC+ L  L  G W H+Y  +        D ++   LIDMY KCG ++ A  VF++M  +
Sbjct: 251 SACSQLGALEQGKWIHSYANKT---RTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTK 307

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            +  W ++I G+A HG    A+  F  +       PN+ITF  VL+AC++ G+V EG+  
Sbjct: 308 SVQVWTALISGYAYHGLGREAISKFLEMQ-NMGVKPNAITFTAVLTACSYTGLVEEGKSV 366

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F+ +  +YN+ P +EHYGC+VDLL RAG ++EA   +  MP+KP+AVIW SLL AC + H
Sbjct: 367 FNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKAC-QIH 425

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            ++ L E++ + +IE +     G YV ++ ++A  ++W+     R+LM ++GV K PGCS
Sbjct: 426 KNIELGEKIGEILIEMDSNH-GGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCS 484

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQS 541
           +I ++G  HEF AGD SH + ++I      +  KL+  GY P+  +  ++D +DD  K++
Sbjct: 485 AISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPEL-EDMLLDLVDDEEKEA 543

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
            +  HSE+LAI  G++  KPG  IR+ KNLRVCKDCH+V  LIS+I+  +I++RDR RFH
Sbjct: 544 IVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFH 603

Query: 602 HFKDGSCSCMDYW 614
           HFKDG CSC DYW
Sbjct: 604 HFKDGKCSCGDYW 616


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/613 (39%), Positives = 352/613 (57%), Gaps = 54/613 (8%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH--FASFADLDYAFRVFYQIENPN 97
           + + +S+ ++ QIHA  LR  L   H    + +  +H  +AS   + ++  +F+Q  +P+
Sbjct: 36  IDKSQSVDEVLQIHAAILRHNL-LLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
            F +   I   + +   K QA +L+ +++    + P++ TF   LK+C+       GK  
Sbjct: 95  LFLFTAAINTASIN-GLKDQAFLLYVQLLSS-EINPNEFTFSSLLKSCST----KSGKLI 148

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-------------- 203
           H H+ K GL  D Y+   L+  YA  G +  A KVFD M ERSLVS              
Sbjct: 149 HTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNV 208

Query: 204 -----------------WNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSA 244
                            WNVMID + Q G  + AL LF+++  +   +PD  T  +  SA
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSA 268

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C+ +  L  G W H ++       +  +V V   LIDMY KCGSL+ A  VF   P++D+
Sbjct: 269 CSQIGALETGRWIHVFVK---SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 325

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +WN++I G+A+HG ++ AL+ F+ +       P  ITF+G L AC H G+V+EG   F+
Sbjct: 326 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFE 385

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M  EY I P +EHYGCLV LL RAG +  A   + NM M  D+V+W S+L + CK H  
Sbjct: 386 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS-CKLHGD 444

Query: 425 VVLSEEVAKQVIESEGGI---CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
            VL +E+A+ +I    G+    SG+YVLLS +YAS   +  V  VR LM +KG+ KEPG 
Sbjct: 445 FVLGKEIAEYLI----GLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S+IEI+   HEF AGD  H ++K+IY  L  I E++KS GY P+ +   + D  +  K+ 
Sbjct: 501 STIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPN-TNTVLQDLEETEKEQ 559

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           SL++HSERLAIA G+++ KPG P+++FKNLRVC DCH VTKLIS+I   +I++RDR RFH
Sbjct: 560 SLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFH 619

Query: 602 HFKDGSCSCMDYW 614
           HF DGSCSC D+W
Sbjct: 620 HFTDGSCSCGDFW 632


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/605 (39%), Positives = 355/605 (58%), Gaps = 13/605 (2%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSL--LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY 71
           Q+H  S+ NN       N   ++  LS L  CKSM + KQ+HA  L+  L          
Sbjct: 9   QSHFLSLPNNPPQSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNL 68

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
                 + +  ++YA  +F QIE P SF +NT+IR    S++ + +A++L+  M+E+G +
Sbjct: 69  VATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLE-EALLLYVEMLERG-I 126

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD  T+PF LKAC+ L A  +G Q HAH+FK GL  DV++ N LI+ Y  CG ++ A+ 
Sbjct: 127 EPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASV 186

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLA 249
           VF+ M E+S+ SW+ +I A      +   L L   M  +     +     S  SAC  L 
Sbjct: 187 VFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLG 246

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           + + G   H  +LR+       +V V  SLIDMY K GSL+    VF++M +++  S+  
Sbjct: 247 SPNFGRCIHGILLRNISE---LNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTV 303

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           II G A+HGR   AL  F  ++ EE  +P+ + +VGVLSAC+H G+V+EG   F+ +  E
Sbjct: 304 IITGLAIHGRGREALSVFSDML-EEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFE 362

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + I P ++HYGC+VDL+ RAG +  A  L+ +MP+KP+ V+WRSLL A CK H ++ + E
Sbjct: 363 HKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSA-CKVHHNLEIGE 421

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A+ + +       G Y++L+ +YA A++W DV  +R  M +K + + PG S +E +  
Sbjct: 422 IAAENIFKLNQH-NPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRN 480

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            ++F + D S PQ + IY  +  ++ +LK  GYTPD SQ  ++D  +D K+  L+ HS++
Sbjct: 481 VYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQ-VLLDVDEDEKRQRLKHHSQK 539

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LAIA  ++    G  IR+ +N+R+C DCH  TK IS I+  EI VRDR RFHHFKDG+CS
Sbjct: 540 LAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCS 599

Query: 610 CMDYW 614
           C DYW
Sbjct: 600 CKDYW 604


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/612 (38%), Positives = 363/612 (59%), Gaps = 24/612 (3%)

Query: 11  PTPQTHSHSIFNNNRNEGSFN--NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
           P+P+ H     N+N N  S    +   ++S L   K ++Q+  IHAQ +R    Q     
Sbjct: 12  PSPKPHP----NSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQD--PF 65

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           +++  +   +    +DYA R+F    NPN + +  LI     S +    AI L+ RM+  
Sbjct: 66  MVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYF-DAIQLYSRMLHD 124

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            ++LPD +     LKAC    A  +G++ H+   K GL S+  +   ++  Y  CG L  
Sbjct: 125 -SILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 183

Query: 189 ANKVFDNMLE----RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
           A +VF+ M E    +  V W  MID FV+  E + AL+ FR MQ     P+ +T   + S
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           AC+ L  L +G W H+Y+ +     +  ++ V N+LI+MY +CGS+D A+ VF+ M  RD
Sbjct: 244 ACSQLGALEIGRWVHSYMRKF---EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 300

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + ++N++I G +++G++  A++ F R+++     P ++TFVGVL+AC+H G+V  G   F
Sbjct: 301 VITYNTMISGLSMNGKSRQAIELF-RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIF 359

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M  +Y + P +EHYGC+VDLL R G ++EA  L+  M M PD ++  +LL AC K H 
Sbjct: 360 HSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC-KMHK 418

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           ++ L E+VAK V+E  G   SG YVLLS VYAS+ +W +   VR  M + G+ KEPGCSS
Sbjct: 419 NLELGEQVAK-VLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSS 477

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSS 542
           IE++   HEF  GD  HP+ ++IY  L+ ++  L+  GY P+  +  ++ +++DG K+ +
Sbjct: 478 IEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPE--KEVVLQDIEDGEKEWA 535

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L +HSERLAI  G+++ +P   IRV KNLRVC DCH   KLI++I   +++VRDR RFH+
Sbjct: 536 LAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHY 595

Query: 603 FKDGSCSCMDYW 614
           F++G+CSC DYW
Sbjct: 596 FENGACSCGDYW 607


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 353/583 (60%), Gaps = 21/583 (3%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLL--IYSRIIHFASFADLDYAFRVFYQIENPN 97
           L  C ++ + KQ+HA+ ++ +L          + ++  H      ++YA  +F  I++P 
Sbjct: 38  LKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 97

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           +F + T+IR     +  +  A+  +  M+E+G + PD  T+P  LKAC  L A  +GKQ 
Sbjct: 98  TFDFKTMIRGYVNEMSFEV-ALCFYNEMMERG-IEPDNFTYPCLLKACTRLKAIREGKQI 155

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H H+FK GL +DV++ NSLI+ Y  CG ++L++ VF+ +  +S  SW+ M  A V  G +
Sbjct: 156 HGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMW 215

Query: 218 DSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              L LFR M  +   + +     S  SACA    L+LGM  H ++LR+       +++V
Sbjct: 216 SECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISE---LNIIV 272

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             SL+DMY KCG +D A  +F+ M KR+  +++++I GFALHG  E+AL+ F  ++ +E 
Sbjct: 273 KTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMI-KEG 331

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ + +V +L+AC+H G+V EGR  F  M+ E  + P  EHYGCLVDLL RAG ++EA
Sbjct: 332 LEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEA 391

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS---GVYVLLSR 452
           L  + ++P++ + V+WRS L   C+ H ++ L +  A+++++    +CS   G Y+L+S 
Sbjct: 392 LETIQSIPIEQNDVVWRSFLSQ-CRVHQNIELGQIAAQELLK----LCSHNPGDYLLISN 446

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +Y+ A  W+DV   R  +  KG+ + PG S++++ G  H F + D SHPQ K+IY  L  
Sbjct: 447 MYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQ 506

Query: 513 IDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
           ++ +LK  GY+PD +Q  + VDE  + K+  L+ HS+++AIA  +L   PG  I++ +NL
Sbjct: 507 MEWQLKFEGYSPDLTQILLNVDE--EEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNL 564

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+C DCH  TK IS I+  EI+VRDR RFH FK G+CSC DYW
Sbjct: 565 RMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/605 (40%), Positives = 348/605 (57%), Gaps = 48/605 (7%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIH--FASFADLDYAFRVFYQIENPNSFTWN 102
           S+ ++ QIHA  LR  L   H    + +  +H  +AS   + ++  +F+Q  +P+ F + 
Sbjct: 39  SVDEVLQIHAAILRHNL-LIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 97

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
             I   + +   K QA +L+ +++    + P++ TF   LK+C+       GK  H H+ 
Sbjct: 98  AAINTASIN-GLKDQAFLLYVQLLSS-QINPNEFTFSSILKSCST----KSGKLIHTHVL 151

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS------------------- 203
           K GL  D Y+   L+  YA  G +  A KVFD M ERSLVS                   
Sbjct: 152 KFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARA 211

Query: 204 ------------WNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLA 249
                       WNVMID + Q G    AL LF+++      +PD  T  +  SAC+ + 
Sbjct: 212 LFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIG 271

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G W H ++       +  +V V  +LIDMY KCGSL+ A  VF   P++D+ +WN+
Sbjct: 272 ALETGRWIHVFV---NSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNA 328

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+A+HG ++ AL+ FD +       P  ITF+G L AC H G+V+EG   F+ M  E
Sbjct: 329 MITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQE 388

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           Y I P +EHYGCLV LL RAG +  A  ++ NM M+ D+V+W S+L + CK H   +L +
Sbjct: 389 YGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGS-CKLHGEFMLGK 447

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
           E+A+ +I  +    SG+YVLLS +YA    +  V  VR LM +KG+ KEPG S+IEID  
Sbjct: 448 EIAEYLI-GQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNK 506

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            HEF AGD  H ++K+IY  L  + E++KS GY P+ +   + D  +  K+ SL++HSER
Sbjct: 507 VHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPN-TNTVLHDLEETEKERSLQVHSER 565

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LAIA G+++ KPG P+++FKNLRVC DCH VTKLIS+I   +I++RDR RFHHF DGSCS
Sbjct: 566 LAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCS 625

Query: 610 CMDYW 614
           C D+W
Sbjct: 626 CDDFW 630


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/610 (38%), Positives = 351/610 (57%), Gaps = 47/610 (7%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPN 97
           S L  C +  +  ++HA  +R  L           R   +A+   LD++  +  + ++P 
Sbjct: 29  SLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRA--YAASGRLDHSLTLLGRTKDPT 86

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           +  + + I A +      P  + L   M+ +G +LP  HT   +L AC  L   S G+  
Sbjct: 87  TIFYTSAIHAHSSRGLHLP-GLALLSDMLSEG-LLPTAHTLSASLPACRGL---SLGRAL 141

Query: 158 HAHIFKRGLVSDVYINNSLIHFY-------------------------------ASCGHL 186
           HA+ FK  L  D Y+  +L+  Y                               A+ G L
Sbjct: 142 HAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGAL 201

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC 245
           D A ++FD +  +  + WN MID + Q G+ + AL+LFRRM +   EPD  T   + SA 
Sbjct: 202 DDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAV 261

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L T+  G W H+Y+       +  +V V  +L+DMYCKCGSL+ A  VF  +  +D+ 
Sbjct: 262 AQLGTVESGKWLHSYVKN--SRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIV 319

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
            WN++I G+A+HG +  AL+ F +L  ++   P  ITF+G+L+AC+H G+V EGR +F  
Sbjct: 320 VWNAMINGYAMHGDSRKALEMFVQLR-DQGLWPTDITFIGLLNACSHSGLVEEGRSFFQS 378

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M +EY I P +EHYGC+VDLL RAG I+EA HLV ++ + PDAV+W SLL A C+ H ++
Sbjct: 379 MEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLL-AACRLHKNM 437

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L + +A  ++ + G   SG+Y+LLS +YA+  +W +V  VR +M   G+ KEPGCS+IE
Sbjct: 438 ALGQRIADFLV-ANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIE 496

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLR 544
           ID   +EF AGD SHP T +IY  LD ++  +K  G+ P      ++ +LD+  K+ +L 
Sbjct: 497 IDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTE--LVLHDLDEATKEKALA 554

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
           +HSE+LA+A G+++ +PG  I++ KNLR C DCH V KLIS+I + +I+ RDR RFHHF 
Sbjct: 555 VHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFV 614

Query: 605 DGSCSCMDYW 614
           DGSC+C DYW
Sbjct: 615 DGSCTCGDYW 624


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/598 (40%), Positives = 350/598 (58%), Gaps = 16/598 (2%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHF 77
           FN     G   N  + +S L  C S S LK   QI    +        +     + +  +
Sbjct: 401 FNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT--ALLSMY 458

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A    L  A RVF +I   N   WN +I A  +  +    A+  FQ ++++G + P+  T
Sbjct: 459 AKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQH-EQYDNALATFQALLKEG-IKPNSST 516

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F   L  C    +   GK  H  I K GL SD++++N+L+  + +CG L  A  +F++M 
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           +R LVSWN +I  FVQ G+   A   F+ MQ    +PD  TF  + +ACA    L+ G  
Sbjct: 577 KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR 636

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA I    + +   DVLV   LI MY KCGS++ A QVF  +PK+++ SW S+I G+A 
Sbjct: 637 LHALI---TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQ 693

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HGR + AL+ F ++  +E   P+ ITFVG LSAC H G++ EG  +F  M  E+NI P +
Sbjct: 694 HGRGKEALELFYQMQ-QEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRM 751

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           EHYGC+VDL  RAG ++EA+  +  M ++PD+ +W +LL AC + H +V L+E+ A++ +
Sbjct: 752 EHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC-QVHLNVELAEKAAQKKL 810

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
           E +    +GV+V+LS +YA+A  W +V  +RK+M D+GV K+PG S IE+DG  H F++ 
Sbjct: 811 ELDPND-NGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSD 869

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           D +HPQT++I+  L+ +  +++  GY PD ++  + D  D+ K+ +L  HSERLAI  G+
Sbjct: 870 DKTHPQTEEIHAELERLHMEMRQLGYVPD-TRYVLHDVEDNEKEQALFYHSERLAITYGL 928

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L   P  PI + KNLRVC DCH  TK IS+I   +II RD  RFHHFKDG CSC D+W
Sbjct: 929 LKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 216/404 (53%), Gaps = 20/404 (4%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRII 75
           ++F     EG   +  + +S L  C   +++ Q K++HA+        +   + + + I+
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE---IYVGTAIL 354

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR--SVDAKPQAIVLFQRMIEQGNVL 132
             +     ++ A  VF  ++  N  +W  +I   A+   +D   +A + F +MIE G + 
Sbjct: 355 SMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID---EAFLFFNKMIESG-IE 410

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P++ TF   L AC+   A  +G+Q   HI + G  SD  +  +L+  YA CG L  A++V
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATL 251
           F+ + ++++V+WN MI A+VQ  ++D+AL  F+  ++   +P+  TF SI + C    +L
Sbjct: 471 FEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSL 530

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            LG W H  I++     L +D+ V+N+L+ M+  CG L  A+ +F  MPKRDL SWN+II
Sbjct: 531 ELGKWVHFLIMK---AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GF  HG+ + A  YF +++ E    P+ ITF G+L+AC     ++EGR    ++     
Sbjct: 588 AGFVQHGKNQVAFDYF-KMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAF 646

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              VL   G L+ +  + G+I++A  +   +P K +   W S++
Sbjct: 647 DCDVLVGTG-LISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMI 688



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 185/383 (48%), Gaps = 43/383 (11%)

Query: 71  YSRIIHFA-SFADLDYAFRVFYQIE----NPNSFTWNTLIR---ACARSVDAK------- 115
           YS ++     F +L    R++  I+     P+ F WNTLI     C  ++ AK       
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMR 172

Query: 116 --------------------PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
                                +A  L ++M+ Q +V PDK TF   L ACA      +G+
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV-QDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           + +  I K G  +D+++  +LI+ +  CG +  A KVFDN+  R LV+W  MI    + G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            F  A  LF+RM+    +PD   F S+  AC     L  G   HA   R  +    T++ 
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA---RMKEVGWDTEIY 348

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V  +++ MY KCGS++ A +VF+ +  R++ SW ++I GFA HGR + A  +F+++ +E 
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM-IES 407

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              PN +TF+ +L AC+    +  G+   D +I E            L+ + A+ G++ +
Sbjct: 408 GIEPNRVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKD 466

Query: 395 ALHLVSNMPMKPDAVIWRSLLDA 417
           A H V     K + V W +++ A
Sbjct: 467 A-HRVFEKISKQNVVAWNAMITA 488



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 193/393 (49%), Gaps = 40/393 (10%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+ + +R ++  ++   + T+   L+ C        G++ + HI K G+  D+++ N+L
Sbjct: 93  EAMQVLER-VDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTL 151

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           I+ YA CG+   A ++FD+M E+ + SWN+++  +VQ G ++ A KL  +M Q   +PD 
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            TF S+ +ACA    +  G   +  IL+       TD+ V  +LI+M+ KCG +  A +V
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILK---AGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+++P RDL +W S+I G A HGR + A   F R+  EE   P+ + FV +L ACNH   
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM-EEEGVQPDKVAFVSLLRACNHPEA 327

Query: 356 VSEGRDYFDVM------INEYNITPVLEHY---GCLVDLL-------------------- 386
           + +G+     M         Y  T +L  Y   G + D L                    
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 387 -ARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
            A+ G IDEA    + M    ++P+ V + S+L AC    A +   +++   +IE+  G 
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA-LKRGQQIQDHIIEAGYGS 446

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
              V   L  +YA      D   V + ++ + V
Sbjct: 447 DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/550 (42%), Positives = 330/550 (60%), Gaps = 15/550 (2%)

Query: 69  LIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            + + +IH +AS  D+  A  +F+ ++      WN +I    ++ D K + + +F+ M+E
Sbjct: 207 FVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWK-EVVEMFKGMLE 265

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
                 D+ T      AC  L   + G+    +  ++G++    +  +L+  YA CG LD
Sbjct: 266 VRAPF-DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELD 324

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACA 246
            A ++FD M  R +V+W+ MI  + Q      AL +F  MQ     P+  T  S+ SACA
Sbjct: 325 KARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L  L  G W H+YI R     L   V++  +L+D Y KCG +  A + FESMP R+  +
Sbjct: 385 VLGALETGKWVHSYIRRK---DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWT 441

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W ++I G A +GR+  AL+ F  ++ E +  P  +TF+GVL AC+H  +V EGR +F  M
Sbjct: 442 WTALIKGMASNGRSREALELFSSML-EANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSM 500

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +Y I P +EHYGC+VDLL RAG IDEA   + NMP++P+AV+WR+LL AC   H +V 
Sbjct: 501 TQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSAC-TVHKNVE 559

Query: 427 LSEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
           + EE  KQ++  +   C SG Y+LLS  YAS  +W +  +VRK M +KGV K PGCS IE
Sbjct: 560 IGEEALKQIVPLDP--CHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIE 617

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLR 544
           ++G   EFFA D+ HPQ  +IY  +  + E +K  GY P+ + A + VDE +  KQ S+ 
Sbjct: 618 LEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYE--KQVSVS 675

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAIA G++  +PG  IR+ KNLRVC DCH  TKLIS+++N EIIVRDR RFHHFK
Sbjct: 676 HHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFK 735

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 736 DGLCSCNDYW 745



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 200/380 (52%), Gaps = 17/380 (4%)

Query: 45  SMSQLKQIHAQALR----TALPQQ-HKTLLIYSRIIHFASFADLDYAFRVFYQIENP--N 97
           ++  + Q+HA  L+    T  P   H  L   +      S A L YA R+F    +P  +
Sbjct: 75  ALRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRS 134

Query: 98  SFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           + ++N LIR+  R+    P+ A+ LF  M++   V PD+HT    +K+C+ +   S G+ 
Sbjct: 135 ARSYNILIRSFLRA--GHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
             A+ FKRG + D ++ NSLIH YASCG +  A+ +F  +  + +++WN MI  +V+ G+
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252

Query: 217 FDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           +   +++F+ M  +  P D  T  S+ +AC  L   +LG W   Y     +  ++    +
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAE---EKGMLRSRNL 309

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             +L+DMY KCG LD AR++F+ M  RD+ +W+++I G+    R   AL  F+ +   E 
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTE- 368

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            +PN +T V VLSAC   G +  G+ +    I   ++   +     LVD  A+ G I +A
Sbjct: 369 VNPNDVTMVSVLSACAVLGALETGK-WVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDA 427

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
           +    +MP++ +   W +L+
Sbjct: 428 VKAFESMPVR-NTWTWTALI 446


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 351/611 (57%), Gaps = 41/611 (6%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           +S +  C ++ +LKQIH Q L   L    + +  +   I   +  +L Y+ +V    +NP
Sbjct: 13  ISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNP 72

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ-GNVLPDKHTFPFALKACAYLFAFSQGK 155
             FT+N++IRA ++S     ++   + R++   G + PD +TF F ++  A L A   G 
Sbjct: 73  TLFTFNSMIRAHSKS-STPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGS 131

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---------------------------- 187
             H    K G   D ++ + LI+ YA  G LD                            
Sbjct: 132 SVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMG 191

Query: 188 ---LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
               A K+FD M  +  ++WN MI  +VQ G+   AL LF  MQ    + +  +  S+ S
Sbjct: 192 DVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLS 251

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           AC+ L  L  G WAHAYI R+    L   + +  +LIDMY KCG+++ A +VF  M +++
Sbjct: 252 ACSHLGALDQGRWAHAYIERN---KLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKN 308

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + +W+S I G A++G  E  L+ F  L+ ++S  PN ITFV VL  C+  G+V EGR +F
Sbjct: 309 VYTWSSAIGGLAMNGAGEKCLELFS-LMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHF 367

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M   Y I P LEHYGC+VDL  RAG++DEAL+ +++MP++P    W +LL+AC K + 
Sbjct: 368 ESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNAC-KIYR 426

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           ++ + E  +++++E E     G YVLLS +YA ++ W+ V  VR+ M  KGV K+PGCS 
Sbjct: 427 NMEMGELASRKIVELEAK-NHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSV 485

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           IE+ G  HEFF GD SHP+  +I   L  I  +LK  GY  + +     D  ++ K+ +L
Sbjct: 486 IEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVAN-TNPVFFDIEEEEKEDAL 544

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
            +HSE++AIA G+++L P +PIR+ KNLRVC DCH+ TK+IS+ FN EI+VRDR RFHHF
Sbjct: 545 CMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHF 604

Query: 604 KDGSCSCMDYW 614
           +DG CSC  YW
Sbjct: 605 RDGECSCKGYW 615


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 341/581 (58%), Gaps = 42/581 (7%)

Query: 67  TLLIYSRIIHFASFADL-DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
            L +    IH  S   L D A +VF   +     TWN ++    R    K   ++  +  
Sbjct: 141 NLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIE-- 198

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E+  V P+  T    L AC+ L     GK  + +I    +  ++ + N LI  +A+CG 
Sbjct: 199 MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGE 258

Query: 186 LDLANKVFDNML-------------------------------ERSLVSWNVMIDAFVQF 214
           +D A  VFDNM                                ER  VSW  MID +++ 
Sbjct: 259 MDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRM 318

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
             F  AL LFR MQ+   +PD +T  SI +ACA L  L LG W   YI ++   S+  D 
Sbjct: 319 NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKN---SIKNDT 375

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N+LIDMY KCG++  A++VF+ M  +D  +W ++I+G A++G  E AL  F  ++ E
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMI-E 434

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
            S +P+ IT++GVL AC H GMV +G+ +F  M  ++ I P + HYGC+VDLL RAG ++
Sbjct: 435 ASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLE 494

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA  ++ NMP+KP++++W SLL A C+ H +V L+E  AKQ++E E      VYVLL  +
Sbjct: 495 EAHEVIVNMPVKPNSIVWGSLLGA-CRVHKNVQLAEMAAKQILELEPE-NGAVYVLLCNI 552

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA+ +RW ++  VRKLM ++G+ K PGCS +E++G  +EF AGD SHPQ+K+IY  L+ +
Sbjct: 553 YAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENM 612

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
            + L   GY+PD S+   +D  ++ K+++L  HSE+LAIA  +++  PG+ IR+ KNLR+
Sbjct: 613 MQDLIKAGYSPDTSE-VFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRM 671

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH + KL+S  +N E+IVRD+ RFHHF+ GSCSC ++W
Sbjct: 672 CVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 199/417 (47%), Gaps = 46/417 (11%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVF 90
            S +S L +CKSM QLKQIH+  ++  L       L   R+I F        + YA +VF
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDP---LFQKRVIAFCCAHESGKMIYARQVF 64

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             I  P  F WNT+I+  +R     PQ  V    ++   N+ PD+ TFPF LK      A
Sbjct: 65  DAIPQPTLFIWNTMIKGYSRI--NHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMA 122

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GK    H  K G  S++++  + IH ++ C  +DLA KVFD      +V+WN+M+  
Sbjct: 123 LQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + +  +F  +  LF  M+     P+  T   + SAC+ L  L  G     +I ++ +  +
Sbjct: 183 YNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGG----KHIYKYINGGI 238

Query: 270 VT-DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           V  ++++ N LIDM+  CG +D A+ VF++M  RD+ SW SI+ GFA  G+ + A KYFD
Sbjct: 239 VERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFD 298

Query: 329 RLVVEESFS------------------------------PNSITFVGVLSACNHRGMVSE 358
           ++   +  S                              P+  T V +L+AC H G +  
Sbjct: 299 QIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALEL 358

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           G ++    I++ +I         L+D+  + GN+ +A  +   M  K D   W +++
Sbjct: 359 G-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKFTWTAMI 413


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/598 (40%), Positives = 350/598 (58%), Gaps = 16/598 (2%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHF 77
           FN     G   N  + +S L  C S S LK   QI    +        +     + +  +
Sbjct: 401 FNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT--ALLSMY 458

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A    L  A RVF +I   N   WN +I A  +  +    A+  FQ ++++G + P+  T
Sbjct: 459 AKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQH-EQYDNALATFQALLKEG-IKPNSST 516

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F   L  C    +   GK  H  I K GL SD++++N+L+  + +CG L  A  +F++M 
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           +R LVSWN +I  FVQ G+   A   F+ MQ    +PD  TF  + +ACA    L+ G  
Sbjct: 577 KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR 636

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA I    + +   DVLV   LI MY KCGS++ A QVF  +PK+++ SW S+I G+A 
Sbjct: 637 LHALI---TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQ 693

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HGR + AL+ F ++  +E   P+ ITFVG LSAC H G++ EG  +F  M  E+NI P +
Sbjct: 694 HGRGKEALELFYQMQ-QEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRM 751

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           EHYGC+VDL  RAG ++EA+  +  M ++PD+ +W +LL AC + H +V L+E+ A++ +
Sbjct: 752 EHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC-QVHLNVELAEKAAQKKL 810

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
           E +    +GV+V+LS +YA+A  W +V  +RK+M D+GV K+PG S IE+DG  H F++ 
Sbjct: 811 ELDPND-NGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSD 869

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           D +HPQT++I+  L+ +  +++  GY PD ++  + D  D+ K+ +L  HSERLAI  G+
Sbjct: 870 DKTHPQTEEIHAELERLHMEMRQLGYVPD-TRYVLHDVEDNEKEQALFYHSERLAITYGL 928

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L   P  PI + KNLRVC DCH  TK IS+I   +II RD  RFHHFKDG CSC D+W
Sbjct: 929 LKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 216/404 (53%), Gaps = 20/404 (4%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRII 75
           ++F     EG   +  + +S L  C   +++ Q K++HA+        +   + + + I+
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE---IYVGTAIL 354

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR--SVDAKPQAIVLFQRMIEQGNVL 132
             +     ++ A  VF  ++  N  +W  +I   A+   +D   +A + F +MIE G + 
Sbjct: 355 SMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID---EAFLFFNKMIESG-IE 410

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P++ TF   L AC+   A  +G+Q   HI + G  SD  +  +L+  YA CG L  A++V
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATL 251
           F+ + ++++V+WN MI A+VQ  ++D+AL  F+  ++   +P+  TF SI + C    +L
Sbjct: 471 FEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSL 530

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            LG W H  I++     L +D+ V+N+L+ M+  CG L  A+ +F  MPKRDL SWN+II
Sbjct: 531 ELGKWVHFLIMK---AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GF  HG+ + A  YF +++ E    P+ ITF G+L+AC     ++EGR    ++     
Sbjct: 588 AGFVQHGKNQVAFDYF-KMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAF 646

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              VL   G L+ +  + G+I++A  +   +P K +   W S++
Sbjct: 647 DCDVLVGTG-LISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMI 688



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 196/388 (50%), Gaps = 11/388 (2%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
             +S+LL    + K++   ++I+    ++ +  Q    +  + I  +A   +   A ++F
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGV--QPDIFMRNTLINMYAKCGNTISAKQIF 168

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +   + ++WN L+    +      +A  L ++M+ Q +V PDK TF   L ACA    
Sbjct: 169 DDMREKDVYSWNLLLGGYVQH-GLYEEAFKLHEQMV-QDSVKPDKRTFVSMLNACADARN 226

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             +G++ +  I K G  +D+++  +LI+ +  CG +  A KVFDN+  R LV+W  MI  
Sbjct: 227 VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITG 286

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
             + G F  A  LF+RM+    +PD   F S+  AC     L  G   HA   R  +   
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA---RMKEVGW 343

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            T++ V  +++ MY KCGS++ A +VF+ +  R++ SW ++I GFA HGR + A  +F++
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           + +E    PN +TF+ +L AC+    +  G+   D +I E            L+ + A+ 
Sbjct: 404 M-IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKC 461

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G++ +A H V     K + V W +++ A
Sbjct: 462 GSLKDA-HRVFEKISKQNVVAWNAMITA 488



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 193/393 (49%), Gaps = 40/393 (10%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+ + +R ++  ++   + T+   L+ C        G++ + HI K G+  D+++ N+L
Sbjct: 93  EAMQVLER-VDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTL 151

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           I+ YA CG+   A ++FD+M E+ + SWN+++  +VQ G ++ A KL  +M Q   +PD 
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            TF S+ +ACA    +  G   +  IL+       TD+ V  +LI+M+ KCG +  A +V
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILK---AGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+++P RDL +W S+I G A HGR + A   F R+  EE   P+ + FV +L ACNH   
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM-EEEGVQPDKVAFVSLLRACNHPEA 327

Query: 356 VSEGRDYFDVM------INEYNITPVLEHY---GCLVDLL-------------------- 386
           + +G+     M         Y  T +L  Y   G + D L                    
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 387 -ARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
            A+ G IDEA    + M    ++P+ V + S+L AC    A +   +++   +IE+  G 
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA-LKRGQQIQDHIIEAGYGS 446

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
              V   L  +YA      D   V + ++ + V
Sbjct: 447 DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/673 (37%), Positives = 374/673 (55%), Gaps = 83/673 (12%)

Query: 13  PQTHSHSIFNNNRNEGSFNNHSSLLSSL-TECK-SMSQLKQIHAQALRTALPQQHKTLLI 70
           P  H H I N +  E S  +H ++L  L T+C  S+  LKQ HA  LRT   Q   + + 
Sbjct: 12  PYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQD--SYIA 69

Query: 71  YSRIIHFAS-----FADLDYAFRVF----------------YQIEN-------------- 95
            S +  +A+     +   + + RVF                  IEN              
Sbjct: 70  GSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMM 129

Query: 96  -----PNSFTWNTLIRACARS------------------------VDAKPQAIVLFQRMI 126
                PN +T+  +++AC+ +                        + +  +    F R++
Sbjct: 130 VAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLV 189

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQ-GKQAHAHIFKRGLVSDVYIN--NSLIHFYASC 183
           E   +L DK     A+   A +  + + G+   A     G+     I+  N++I  ++ C
Sbjct: 190 EARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRC 249

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSIT 242
           G +++A + FD M ER  +SW+ MID ++Q G F  AL++F +MQ     P  +   S+ 
Sbjct: 250 GMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVL 309

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           SACA L  L  G W H Y  R+   S+  D ++  SL+DMY KCG +D+A +VFE M  +
Sbjct: 310 SACANLGALDQGRWIHTYAKRN---SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK 366

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           +++SWN++I G A+HGRAE A+  F ++      +PN ITFVGVL+AC H G+V +G   
Sbjct: 367 EVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFVGVLNACAHGGLVQKGLTI 422

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F+ M  EY + P +EHYGC+VDLL RAG + EA  +VS++P +P   +W +LL AC +KH
Sbjct: 423 FNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGAC-RKH 481

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            +V L E V K ++E E    SG Y LLS +YA A RW +VG VRKLM ++G+   PG S
Sbjct: 482 GNVELGERVGKILLELEPQ-NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTS 540

Query: 483 SIEID-GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
            I++  G  H+F  GD SHPQ K IY  LD + E+L+  GY PD SQ  + D  ++ K++
Sbjct: 541 IIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV-LFDIDEEEKET 599

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           ++  HSE+LAI  G++N  PG  IR+ KNLRVC+DCH  TKLIS+++N EIIVRDR R+H
Sbjct: 600 AVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYH 659

Query: 602 HFKDGSCSCMDYW 614
           HF++G+CSC D+W
Sbjct: 660 HFRNGACSCKDFW 672


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/544 (42%), Positives = 324/544 (59%), Gaps = 18/544 (3%)

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
           H +    + YA  +F    +PN F WNT+IR  + S D+   AI L++ M   G + P+ 
Sbjct: 10  HPSPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSIS-DSPISAIALYKDMFLCG-ISPNS 67

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           +TF F L AC  L    +G++ H+ I K GL  +  + N LI  YA+CG +D A  +FD 
Sbjct: 68  YTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDE 127

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           M E    SW+ M+  + Q G+    LKL R MQ      D +T  S+   C  L  L LG
Sbjct: 128 MPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG 187

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
            W H+YI +     +  DV++  +L+ MY KCGSLD A +VF+ M +RD+T+W+ +I G+
Sbjct: 188 KWVHSYIDKE---GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGY 244

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A+HG  E AL+ FD +       PN +TF  VLSA +H G+V +G   F+ M  EY ITP
Sbjct: 245 AIHGHDEKALQLFDAMK-RSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITP 303

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            ++HYGC+VDL  RAG +  A   +  MP++P+ V+WR+LL AC K H    L E ++++
Sbjct: 304 QIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGAC-KTHGYKGLGEHISRK 362

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           +++ +       YV +S VYAS  RW+ V  VR LM +K   K+ G SSIEI+ + H+F 
Sbjct: 363 ILKLDPSSPEN-YVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFI 421

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD----GKQSSLRLHSERL 550
            G+ SHP+ ++IYG L  +  KLK  G+      A+ VD L D     K+ +L LHSERL
Sbjct: 422 MGEESHPKREKIYGMLHQMARKLKQVGHV-----ASTVDVLHDIDEEEKEYALGLHSERL 476

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G+L+   G PIR+ KNLR C+DCHEV KLIS ++N EII+RDR  FHHF++  CSC
Sbjct: 477 AIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSC 536

Query: 611 MDYW 614
            DYW
Sbjct: 537 NDYW 540



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 153/319 (47%), Gaps = 24/319 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +L++  +   + + +++H+Q ++  L    +T L+   I  +A+   +DYA  +F ++  
Sbjct: 73  VLNACCKLLRLCEGQELHSQIVKAGL--DFETPLLNGLIKLYAACGCMDYACVMFDEMPE 130

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+S +W+T++   +++  A     +L  R ++  NV  D  T    +  C  L     GK
Sbjct: 131 PDSASWSTMVSGYSQNGQAVETLKLL--REMQAENVSSDAFTLASVVGVCGDLGVLDLGK 188

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H++I K G+  DV +  +L+  Y+ CG LD A KVF  M ER + +W++MI  +   G
Sbjct: 189 WVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHG 248

Query: 216 EFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLSLG------MWAHAYILRHCD 266
             + AL+LF   +R +I+  P+  TF S+ SA +    +  G      MW    I     
Sbjct: 249 HDEKALQLFDAMKRSKII--PNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIK 306

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALK 325
           H           ++D++C+ G +  A +  ++MP + ++  W +++     HG       
Sbjct: 307 HY--------GCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEH 358

Query: 326 YFDRLVVEESFSPNSITFV 344
              +++  +  SP +  FV
Sbjct: 359 ISRKILKLDPSSPENYVFV 377


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 335/558 (60%), Gaps = 49/558 (8%)

Query: 98  SFTWNTLIRACARSVDAKPQ---AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           SF WN +IRA   +V + PQ    I ++ RM     V PD HTFPF L +         G
Sbjct: 24  SFLWNIIIRAIVHNVSS-PQRHSPISVYLRM-RNHRVSPDFHTFPFLLPSFHNPLHLPLG 81

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHL---------------------------- 186
           ++ HA I   GL  D ++  SL++ Y+SCG L                            
Sbjct: 82  QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA 141

Query: 187 ---DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI------LFEPDGYT 237
              D A K+FD M ER+++SW+ +I+ +V  G++  AL LFR MQ+         P+ +T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             ++ SAC  L  L  G W HAYI ++    +  D+++  +LIDMY KCGSL+ A++VF 
Sbjct: 202 MSTVLSACGRLGALEQGKWVHAYIDKY---HVEIDIVLGTALIDMYAKCGSLERAKRVFN 258

Query: 298 SM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           ++  K+D+ +++++I   A++G  +   + F  +   ++ +PNS+TFVG+L AC HRG++
Sbjct: 259 ALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLI 318

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
           +EG+ YF +MI E+ ITP ++HYGC+VDL  R+G I EA   +++MPM+PD +IW SLL 
Sbjct: 319 NEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
              +    +   E   K++IE +  + SG YVLLS VYA   RW +V  +R  M  KG+ 
Sbjct: 379 G-SRMLGDIKTCEGALKRLIELD-PMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGIN 436

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PGCS +E++G+ HEF  GD S  ++++IY  LD I ++L+  GY  D ++  ++D  +
Sbjct: 437 KVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTD-TKEVLLDLNE 495

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
             K+ +L  HSE+LAIA  ++  +PG P+R+ KNLR+C DCH V K+IS++F+ EI+VRD
Sbjct: 496 KDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRD 555

Query: 597 RARFHHFKDGSCSCMDYW 614
             RFHHF+DGSCSC D+W
Sbjct: 556 CNRFHHFRDGSCSCRDFW 573



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 17/330 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +SLL+  + C  +   +++   +    LP  +  +  Y++         +D A ++F ++
Sbjct: 101 TSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA------GLIDDARKLFDEM 154

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRM----IEQGNVLPDKHTFPFALKACAYLF 149
              N  +W+ LI         K +A+ LF+ M      +  V P++ T    L AC  L 
Sbjct: 155 PERNVISWSCLINGYVMCGKYK-EALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMI 208
           A  QGK  HA+I K  +  D+ +  +LI  YA CG L+ A +VF+ +  ++ + +++ MI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273

Query: 209 DAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
                +G  D   +LF  M       P+  TF  I  AC     ++ G      ++   +
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIE--E 331

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALK 325
             +   +     ++D+Y + G +  A     SMP + D+  W S++ G  + G  +    
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGM 355
              RL+  +  +  +   +  + A   R M
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWM 421


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/606 (41%), Positives = 352/606 (58%), Gaps = 23/606 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-- 77
           +   N+ + +   H  LLS L  C S+  L Q+HA A++  L   H  L+  +R++    
Sbjct: 13  LLPANKPKSAAPQHP-LLSHLPHCTSLRGLAQLHAAAVKAGL-AAHPALV--TRLLTLCT 68

Query: 78  ---ASFADLDYAFRVFYQIENPNSFTW-NTLIRACARSVDAKPQA----IVLFQRMIEQG 129
              A  A L YA +VF ++  P+   W NTL+R  ARS  +   +    + +F RM+E+G
Sbjct: 69  GPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEG 128

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            V PD +TF   LKACA   A   G+QAHA   K G     Y+  +LI+ YA CG    A
Sbjct: 129 -VAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAA 187

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
              F       +VS+N MI A V+      AL LFR MQ     P   T  S+ SACA L
Sbjct: 188 RVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALL 247

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             L LG W H Y+ +    SLV    V+ +L+DMY KCGSL+ A  VF+ M  RD  +W+
Sbjct: 248 GALQLGRWLHDYVRKLGLGSLVK---VSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWS 304

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
            +I+ +A HG    A+  F+ +  ++   P+ ITF+G+L AC+H G+VSEG  YFD M  
Sbjct: 305 VMIVAYANHGYGREAISLFEEMK-KQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-K 362

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           ++ I P ++HYGC+ DLLAR+G ++ A   +  +P+ P  ++WR+LL AC   H  V L 
Sbjct: 363 DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSAC-GGHGDVELG 421

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           + V ++++E +     G YV+ S + A+   W ++  VRKLM+DKGV K PGCSSIEID 
Sbjct: 422 KRVFERILELDDSH-GGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDN 480

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             HEFFAGD  HP++++    +D + ++LK  GY PD S    V+  ++ K  SL+ HSE
Sbjct: 481 TVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSE 540

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA G+LN  PG  +RV KNLRVC DCH + K +S +FN  II+RD  RFHHF+ G C
Sbjct: 541 KLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGIC 600

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 601 SCGDYW 606


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/582 (38%), Positives = 334/582 (57%), Gaps = 12/582 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+++   +  +M   K +HA  +R +  +        + +  +A    L  A ++F  + 
Sbjct: 200 SMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT 259

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
                +W  +I  C RS +   +   LF RM E+ N+ P++ T    +  C +  A   G
Sbjct: 260 QKTVVSWTAMIAGCIRS-NRLEEGTKLFIRMQEE-NIFPNEITMLSLIVECGFTGALQLG 317

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           KQ HA+I + G    + +  +L+  Y  C  +  A  +FD+   R ++ W  M+ A+ Q 
Sbjct: 318 KQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQA 377

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
              D A  LF +M+     P   T  S+ S CA    L LG W H+YI +     +  D 
Sbjct: 378 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE---RVEVDC 434

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           ++N +L+DMY KCG ++ A ++F     RD+  WN+II GFA+HG  E AL  F  +   
Sbjct: 435 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME-R 493

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           +   PN ITF+G+L AC+H G+V+EG+  F+ M++ + + P +EHYGC+VDLL RAG +D
Sbjct: 494 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 553

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA  ++ +MP+KP+ ++W +L+ A C+ H +  L E  A Q++E E   C G  VL+S +
Sbjct: 554 EAHEMIKSMPIKPNTIVWGALV-AACRLHKNPQLGELAATQLLEIEPENC-GYNVLMSNI 611

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA+A RW+D   VRK M   G+ KEPG S IE++G  HEF  GD SHPQ ++I   L  +
Sbjct: 612 YAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEM 671

Query: 514 DEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
             KL   GY PD S   + +DE  + K+++L  HSE+LA+A G+++  P  PIR+ KNLR
Sbjct: 672 RRKLNEAGYVPDTSTVLLNIDE--EEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLR 729

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH  TKL+S+I+   IIVRDR RFHHF++G CSC DYW
Sbjct: 730 VCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 7/281 (2%)

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
           P  LKAC  +     GK+ H  + K+GL  DV++ N+L+  Y  C  ++ A  VFD M+E
Sbjct: 98  PSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 157

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           R +VSW+ MI +  +  EFD AL+L R M  +   P      S+ +  A  A + +G   
Sbjct: 158 RDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAM 217

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HAY++R+ ++  +  V    +L+DMY KCG L +ARQ+F  + ++ + SW ++I G    
Sbjct: 218 HAYVIRNSNNEHM-GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 276

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVL 376
            R E   K F R+  EE+  PN IT + ++  C   G +  G+  +  ++ N ++++  L
Sbjct: 277 NRLEEGTKLFIRM-QEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLAL 335

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                LVD+  +  +I  A  L  +   + D +IW ++L A
Sbjct: 336 AT--ALVDMYGKCSDIRNARALFDSTQNR-DVMIWTAMLSA 373



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 181/380 (47%), Gaps = 24/380 (6%)

Query: 45  SMSQL-KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           S +QL K+IH   L+  L +     +  + ++ +   A ++YA  VF ++   +  +W+T
Sbjct: 108 SWTQLGKEIHGFVLKKGLDRD--VFVGNALMLMYGECACVEYARLVFDKMMERDVVSWST 165

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA----FSQGKQAHA 159
           +IR+ +R+     +   +   +I + N +  + +   A+ +   LFA       GK  HA
Sbjct: 166 MIRSLSRN-----KEFDMALELIREMNFMQVRPS-EVAMVSMVNLFADTANMRMGKAMHA 219

Query: 160 HIFKRGLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           ++ +        V    +L+  YA CGHL LA ++F+ + ++++VSW  MI   ++    
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 279

Query: 218 DSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           +   KLF RMQ   +F P+  T  S+   C     L LG   HAYILR   +     + +
Sbjct: 280 EEGTKLFIRMQEENIF-PNEITMLSLIVECGFTGALQLGKQLHAYILR---NGFSVSLAL 335

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             +L+DMY KC  +  AR +F+S   RD+  W +++  +A     + A   FD++     
Sbjct: 336 ATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT-SG 394

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P  +T V +LS C   G +  G+ +    I++  +         LVD+ A+ G+I+ A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGK-WVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
             L     +  D  +W +++
Sbjct: 454 GRLFIE-AISRDICMWNAII 472


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/570 (40%), Positives = 340/570 (59%), Gaps = 14/570 (2%)

Query: 47   SQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR 106
            S LK+ HA+     L  Q+ + ++    I + SF  +D A  VF  I NP SF WN +IR
Sbjct: 734  SCLKKTHAKIFAYGL--QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIR 791

Query: 107  ACARSVDAK-PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A   D +   ++ L+ +M+E+G + PDK  FPFALK+CA L    +GK  H H+   G
Sbjct: 792  GFA--TDGRFLSSLELYSKMMEKG-LKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCG 848

Query: 166  LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
              +D++++ +L+  YA CG ++ A  VFD M  R LVSW  MI  +   G     L  F 
Sbjct: 849  CSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFD 908

Query: 226  RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
             M+     P+  +  S+  AC  L  L  G W H+Y+++        D+LV  +++DMY 
Sbjct: 909  LMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQT---GFEFDILVATAIMDMYS 965

Query: 285  KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            KCGSLD+AR +F+    +DL  W+++I  + +HG    A+  FD++V +    P+ +TF 
Sbjct: 966  KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMV-KAGVRPSHVTFT 1024

Query: 345  GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
             VLSAC+H G++ EG+ YF +M  E+ I   L +Y C+VDLL RAG + EA+ L+ NMP+
Sbjct: 1025 CVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV 1084

Query: 405  KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
            +PDA IW SLL AC + H ++ L+E++A  +   +  + +G +VLLS +YA+  RWN+V 
Sbjct: 1085 EPDASIWGSLLGAC-RIHNNLDLAEKIADHLFHLDP-VHAGYHVLLSNIYAAKSRWNEVE 1142

Query: 465  LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
             VRK+M  +G  K  G S +E D   H+F  GD SHPQ +++Y  L+ +   +K  GY P
Sbjct: 1143 KVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVP 1202

Query: 525  DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
              +   + D  ++ K+++L  HSERLAIA G++N  PG  +R+ KNLR+C DCH   KLI
Sbjct: 1203 -LTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLI 1261

Query: 585  SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            S+I N  I+VRD  RFH F+DG CSC DYW
Sbjct: 1262 SKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 263/495 (53%), Gaps = 13/495 (2%)

Query: 35  SLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +L+S ++ C  +  +K    +H   +R          L+ S +  +A       A  +F 
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP--LVNSLLNLYAKTGCEKIAANLFS 265

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   +  +W+T+I AC  + +A  +A+ LF  MIE+    P+  T   AL+ACA     
Sbjct: 266 KMPEKDVISWSTMI-ACYANNEAANEALNLFHEMIEK-RFEPNSVTVVSALQACAVSRNL 323

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +GK+ H     +G   D  ++ +LI  Y  C   D A  +F  + ++ +VSW  ++  +
Sbjct: 324 EEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGY 383

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G    ++ +FR M     +PD      I +A + L      +  H Y++R       
Sbjct: 384 AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS---GFN 440

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           ++V V  SLI++Y KCGSL  A ++F+ M  RD+  W+S+I  + +HGR   AL+ FD++
Sbjct: 441 SNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQM 500

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           V   +  PN++TF+ +LSAC+H G+V EG   FD M+++Y + P  EH+G +VDLL R G
Sbjct: 501 VKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIG 560

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            + +A+ +++ MP+     +W +LL A C+ H ++ + E  AK +   +    +G Y+LL
Sbjct: 561 QLGKAMDIINRMPIPAGPHVWGALLGA-CRIHHNIEMGEAAAKNLFWLDPS-HAGYYILL 618

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA   +W++V  +R  + ++G+ K  G S +E+ G  H F A D  HP +++IY  L
Sbjct: 619 SNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELL 678

Query: 511 DLIDEKLKSRGYTPD 525
             ++ ++    Y PD
Sbjct: 679 RKLEAQMGKEVYIPD 693



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 186/390 (47%), Gaps = 22/390 (5%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+     C +   + Q+H+Q  +T +   H T         +A  A L  A +VF +  +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGI--LHDTFFATKLNSLYAKCASLQAARKVFDETPH 64

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN   WN+ +R+  R    + + + LF  MI      PD  T P ALKACA L     GK
Sbjct: 65  PNVHLWNSTLRSYCREKQWE-ETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK 123

Query: 156 QAHAHIFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
             H    K   + SD+++ ++L+  Y+ CG +  A KVF+       V W  M+  + Q 
Sbjct: 124 VIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQN 183

Query: 215 GEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            + + AL LF +M ++     D  T  S+ SACA L  +  G   H  ++R        D
Sbjct: 184 NDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIR---REFDGD 240

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + + NSL+++Y K G   IA  +F  MP++D+ SW+++I  +A +  A  AL  F  + +
Sbjct: 241 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM-I 299

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-----EYNITPVLEHYGCLVDLLA 387
           E+ F PNS+T V  L AC     + EG+    + +      +++++        L+D+  
Sbjct: 300 EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTA------LIDMYM 353

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +    DEA+ L   +P K D V W +LL  
Sbjct: 354 KCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 8/342 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    +  A +VF + + P++  W +++    ++ D + +A+ LF +M+    V+ D  
Sbjct: 149 YSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPE-EALALFSQMVMMDCVVLDPV 207

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    + ACA L     G   H  + +R    D+ + NSL++ YA  G   +A  +F  M
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 267

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
            E+ ++SW+ MI  +      + AL LF  M +  FEP+  T  S   ACA    L  G 
Sbjct: 268 PEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGK 327

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H   +         D  V+ +LIDMY KC   D A  +F+ +PK+D+ SW +++ G+A
Sbjct: 328 KIHKIAVW---KGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYA 384

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G A  ++  F R ++ +   P+++  V +L+A +  G+  +       ++     + V
Sbjct: 385 QNGMAYKSMGVF-RNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNV 443

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                 L++L ++ G++ +A+ L   M ++ D VIW S++ A
Sbjct: 444 FVG-ASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAA 483



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 13/269 (4%)

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
           FS  K+ HA IF  GL  D  I       Y S   +D A+ VF+++       WNVMI  
Sbjct: 733 FSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRG 792

Query: 211 FVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           F   G F S+L+L+ + M+   +PD + F     +CAGL+ L  G   H +++  C  S 
Sbjct: 793 FATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV-CCGCS- 850

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D+ V+ +L+DMY KCG ++ AR VF+ M  RDL SW S+I G+A +G     L +FD 
Sbjct: 851 -NDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFD- 908

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITPVLEHYGCLVDLL 386
           L+      PN ++ + VL AC + G + +G  +   +I    E++I         ++D+ 
Sbjct: 909 LMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVAT----AIMDMY 964

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++ G++D A  L      K D V W +++
Sbjct: 965 SKCGSLDLARCLFDETAGK-DLVCWSAMI 992



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 154/334 (46%), Gaps = 7/334 (2%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H+ +FK G++ D +    L   YA C  L  A KVFD     ++  WN  + ++ +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 216 EFDSALKLFRRMQILF--EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           +++  L+LF  M       PD +T      ACAGL  L LG   H +  +  +  + +D+
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKK--NDEIGSDM 139

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V ++L+++Y KCG +  A +VFE   + D   W S++ G+  +   E AL  F ++V+ 
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           +    + +T V V+SAC     V  G     ++I        L     L++L A+ G   
Sbjct: 200 DCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRR-EFDGDLPLVNSLLNLYAKTGCEK 258

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
            A +L S MP K D + W +++ AC   + +   +  +  ++IE      S   V   + 
Sbjct: 259 IAANLFSKMPEK-DVISWSTMI-ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 316

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
            A +R   +   + K+   KG   +   S+  ID
Sbjct: 317 CAVSRNLEEGKKIHKIAVWKGFELDFSVSTALID 350


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/561 (41%), Positives = 341/561 (60%), Gaps = 15/561 (2%)

Query: 45  SMSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP-NSF 99
           S+++L+QIHA ++R  +     +  K L+ Y  ++   S   + YA +VF +IE P N F
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFY--LVSLPSPPPMSYAHKVFSKIEKPINVF 86

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            WNTLIR  A  +     A  L++ M   G V PD HT+PF +KA   +     G+  H+
Sbjct: 87  IWNTLIRGYAE-IGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            + + G  S +Y+ NSL+H YA+CG +  A KVFD M E+ LV+WN +I+ F + G+ + 
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL L+  M     +PDG+T  S+ SACA +  L+LG   H Y+++     L  ++  +N 
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV---GLTRNLHSSNV 262

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+D+Y +CG ++ A+ +F+ M  ++  SW S+I+G A++G  + A++ F  +   E   P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
             ITFVG+L AC+H GMV EG +YF  M  EY I P +EH+GC+VDLLARAG + +A   
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           + +MPM+P+ VIWR+LL AC   H    L+E    Q+++ E    SG YVLLS +YAS +
Sbjct: 383 IKSMPMQPNVVIWRTLLGACT-VHGDSDLAEFARIQILQLEPN-HSGDYVLLSNMYASEQ 440

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW+DV  +RK M   GV K PG S +E+    HEF  GD SHPQ+  IY  L  +  +L+
Sbjct: 441 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 500

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           S GY P  S    VD  ++ K++++  HSE++AIA  +++     PI V KNLRVC DCH
Sbjct: 501 SEGYVPQISN-VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCH 559

Query: 579 EVTKLISRIFNVEIIVRDRAR 599
              KL+S+++N EI+VRDR+R
Sbjct: 560 LAIKLVSKVYNREIVVRDRSR 580


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 350/591 (59%), Gaps = 17/591 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFR 88
           N  ++LS L  C SM +L +IHA  L      QH    I  ++++F + +    L YA  
Sbjct: 22  NARAILSLLQGCNSMRKLHKIHAHILINGY--QHNPS-ISEKLLNFCAVSVSGSLAYAQL 78

Query: 89  VFYQIENPNSFTWNTLIRACARSVDA-KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           VF++I NP +  WN++IR  ++S    + QAIV +  M+   +  PD +TF F LKAC  
Sbjct: 79  VFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEE 138

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                + ++ H  I + G   DV +  +LI  YA  G ++ A+KVF+ M  R LVSWN M
Sbjct: 139 AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSM 198

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + Q G  + ALK++ +M+I     DG+T  S+ S+CA +  L +G+  H +     +
Sbjct: 199 ISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFA---GE 255

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             LV ++ V N+LIDMY KCGSL  A  +F SMPKRD+ +WNS+I+G+ +HGR + A+ +
Sbjct: 256 RRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITF 315

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +++     PNSITF+G+L  C+H+G+V EG  YF +M +E+N+ P ++HYGC+VDL 
Sbjct: 316 FGSMLMA-GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 374

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG + EAL ++ + P + D V+WR+LL + CK H +V + E   + +++  G + +G 
Sbjct: 375 GRAGKLKEALEVIRSSPSQHDPVLWRTLLGS-CKIHRNVEIGEMAMRNLVQL-GSLGAGD 432

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            VLLS +YA A+    V  +RKL+  +G+   PG S IE+    H F   D SHP +++I
Sbjct: 433 CVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREI 492

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK---QSSLRLHSERLAIALGILNLKPGM 563
           Y  L+ +  +    GY  + S      E +  +   ++S   HSE+LAIA G+     G 
Sbjct: 493 YRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGT 552

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + + KNLRVC+DCH  TK +S  F+ EIIVRDR RFHHFK G CSC ++W
Sbjct: 553 SLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 350/591 (59%), Gaps = 17/591 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFR 88
           N  ++LS L  C SM +L +IHA  L      QH    I  ++++F + +    L YA  
Sbjct: 4   NARAILSLLQGCNSMRKLHKIHAHILINGY--QHNPS-ISEKLLNFCAVSVSGSLAYAQL 60

Query: 89  VFYQIENPNSFTWNTLIRACARSVDA-KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           VF++I NP +  WN++IR  ++S    + QAIV +  M+   +  PD +TF F LKAC  
Sbjct: 61  VFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEE 120

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                + ++ H  I + G   DV +  +LI  YA  G ++ A+KVF+ M  R LVSWN M
Sbjct: 121 AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSM 180

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + Q G  + ALK++ +M+I     DG+T  S+ S+CA +  L +G+  H +     +
Sbjct: 181 ISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFA---GE 237

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             LV ++ V N+LIDMY KCGSL  A  +F SMPKRD+ +WNS+I+G+ +HGR + A+ +
Sbjct: 238 RRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITF 297

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +++     PNSITF+G+L  C+H+G+V EG  YF +M +E+N+ P ++HYGC+VDL 
Sbjct: 298 FGSMLMA-GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 356

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG + EAL ++ + P + D V+WR+LL + CK H +V + E   + +++  G + +G 
Sbjct: 357 GRAGKLKEALEVIRSSPSQHDPVLWRTLLGS-CKIHRNVEIGEMAMRNLVQL-GSLGAGD 414

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            VLLS +YA A+    V  +RKL+  +G+   PG S IE+    H F   D SHP +++I
Sbjct: 415 CVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREI 474

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK---QSSLRLHSERLAIALGILNLKPGM 563
           Y  L+ +  +    GY  + S      E +  +   ++S   HSE+LAIA G+     G 
Sbjct: 475 YRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGT 534

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + + KNLRVC+DCH  TK +S  F+ EIIVRDR RFHHFK G CSC ++W
Sbjct: 535 SLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/635 (38%), Positives = 364/635 (57%), Gaps = 38/635 (5%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL 61
           A A ++  P   + HS++I N    +    N  +L+ +  +C SM+        A++   
Sbjct: 268 ACASLKALPQIKEIHSYAIRNGTFADAFVCN--ALIDTYAKCGSMND-------AVKVFN 318

Query: 62  PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN----SFTWNTLIRACARSVDAKP 116
             + K ++ ++ ++  +    +   AF +F  +   N      TW+ +I   A+      
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQR-GCSQ 377

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-------- 168
           +A+  FQ+MI  G+  P+  T    L ACA L A SQG + HA+  K+ L+S        
Sbjct: 378 EALDAFQQMILDGSE-PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGD 436

Query: 169 ----DVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALK 222
               D+ + N+LI  Y+ C     A  +FD++   ER++V+W VMI  + Q+G+ + ALK
Sbjct: 437 GDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALK 496

Query: 223 LFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           +F  M        P+ YT   I  ACA LA L +G   HAY+ RH ++   +   V N L
Sbjct: 497 IFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYE-PSVYFVANCL 555

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           IDMY KCG +D AR VF+SMPKR+  SW S++ G+ +HGR + AL  FD++  +  F P+
Sbjct: 556 IDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ-KAGFVPD 614

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            I+F+ +L AC+H GMV +G +YFD+M  +Y++    EHY C++DLLAR G +D+A   +
Sbjct: 615 DISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTI 674

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MPM+P AVIW +LL AC + H++V L+E    +++  +     G Y L+S +YA+ARR
Sbjct: 675 QEMPMEPSAVIWVALLSAC-RVHSNVELAEYALNKLVNMKAEN-DGSYTLISNIYANARR 732

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W DV  +R+LM   G+ K PGCS ++       FF GD SHP + +IY  L+ +  ++K 
Sbjct: 733 WKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKV 792

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GY P+ +  A+ D  D+ K + L  HSE+LA+A G+L   PG PIR+ KNLRVC DCH 
Sbjct: 793 MGYVPE-TNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHS 851

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
               IS+I + EIIVRD +RFHHFK+GSCSC  YW
Sbjct: 852 AFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 191/402 (47%), Gaps = 59/402 (14%)

Query: 70  IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI--- 126
           +YSR     S  D    F    +    +  +WN+++ A  +  + +  A+ LF  M    
Sbjct: 193 MYSRC---GSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPR-TALELFSEMSMIV 248

Query: 127 --EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
             +  N   D  +    L ACA L A  Q K+ H++  + G  +D ++ N+LI  YA CG
Sbjct: 249 HEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCG 308

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM----------------- 227
            ++ A KVF+ M  + +VSWN M+  + Q G F +A +LF  M                 
Sbjct: 309 SMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIA 368

Query: 228 ----------------QILF---EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
                           Q++    EP+  T  S+ SACA L  LS GM  HAY L+ C  S
Sbjct: 369 GYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLS 428

Query: 269 L---------VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD--LTSWNSIILGFALH 317
           L           D++V N+LIDMY KC S   AR +F+S+P+R+  + +W  +I G+A +
Sbjct: 429 LDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQY 488

Query: 318 GRAEAALKYFDRLVVEE-SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           G +  ALK F  ++ +  + +PN+ T   +L AC H   +  G+     +   +   P +
Sbjct: 489 GDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSV 548

Query: 377 EHYG-CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                CL+D+ ++ G++D A ++  +MP K + V W S++  
Sbjct: 549 YFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSG 589



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 171/359 (47%), Gaps = 36/359 (10%)

Query: 38  SSLTECKSMSQLKQIHAQALRTA---------------LPQQH----KTLLIYSRIIHFA 78
           S L EC+S++ ++QIH + +                  LP       K+L       + A
Sbjct: 36  SLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLA 95

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
             A  D A  V  ++    +  WN L+R   +      +AI +  RM+  G   PD  T 
Sbjct: 96  CGATKD-ALSVLERVTPSPAVWWNLLVREHIKEGHLD-RAIGVSCRMLRAGTK-PDHFTL 152

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
           P+ALKAC  L ++  G+  H  I   G  S+V++ N+L+  Y+ CG L+ A+ VFD +  
Sbjct: 153 PYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITR 212

Query: 199 RSL---VSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSACAGL 248
           + +   +SWN ++ A V+     +AL+LF  M ++          D  +  +I  ACA L
Sbjct: 213 KGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASL 272

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             L      H+Y +R   +    D  V N+LID Y KCGS++ A +VF  M  +D+ SWN
Sbjct: 273 KALPQIKEIHSYAIR---NGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWN 329

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           +++ G+   G   AA + F+ +  +E+   + IT+  V++    RG   E  D F  MI
Sbjct: 330 AMVTGYTQSGNFGAAFELFENM-RKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI 387



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 122/260 (46%), Gaps = 18/260 (6%)

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           VS   +   ++  Y +CG    A  V + +     V WN+++   ++ G  D A+ +  R
Sbjct: 80  VSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCR 139

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M +   +PD +T      AC  L +   G   H  I   C +   ++V V N+L+ MY +
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLI---CCNGFESNVFVCNALVAMYSR 196

Query: 286 CGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRL---VVEESFSPN 339
           CGSL+ A  VF+ + ++   D+ SWNSI+           AL+ F  +   V E++ +  
Sbjct: 197 CGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNER 256

Query: 340 S--ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC--LVDLLARAGNIDEA 395
           S  I+ V +L AC     + + ++     I         + + C  L+D  A+ G++++A
Sbjct: 257 SDIISIVNILPACASLKALPQIKEIHSYAIRNGTFA---DAFVCNALIDTYAKCGSMNDA 313

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
           + + + M  K D V W +++
Sbjct: 314 VKVFNVMEFK-DVVSWNAMV 332


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/620 (39%), Positives = 354/620 (57%), Gaps = 49/620 (7%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD---YAFRV 89
            S L+S L  C  ++Q+KQ+HA   R  L Q      + ++++   +  D+    Y   V
Sbjct: 39  ESRLVSVLHGCTHINQVKQVHAHIFRKGLEQ---CCFVLAKLLRTLTKLDVPMDPYPRLV 95

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F Q+E PN F W  LIR  A       ++++L+  M  QG + P   TF   LKAC+   
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQ-GPFMESVLLYNSMRRQG-IGPVSFTFTALLKACSAAL 153

Query: 150 AFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
             + G+Q H   I   G  SD+Y+ N+LI  Y  CG L   ++VFD ML+R ++SW  +I
Sbjct: 154 DVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLI 213

Query: 209 DAFVQFGEFDSA-------------------------------LKLFRRMQIL-FEPDGY 236
            A+ + G  ++A                               L++F RMQ    + D  
Sbjct: 214 VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEV 273

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T   + SACA L       W    +         ++V+V ++LIDMY KCGS++ A +VF
Sbjct: 274 TLVGVISACAQLGAAKYANWVRD-VAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           E M +R++ S++S+I+GFA+HG A AA++ FD ++  E   PN +TF+GVL+AC+H GMV
Sbjct: 333 ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTE-IKPNRVTFIGVLTACSHAGMV 391

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            +G+  F +M   + + P  +HY C+VDLL RAG ++EAL+LV  MPM P   +W +LL 
Sbjct: 392 EQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLG 451

Query: 417 ACCKKHASVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
           A C+ H +  +++  A  + E E  GI  G Y+LLS +YASA RW+DV  VRKLM  KG+
Sbjct: 452 A-CRIHGNPDMAQIAASHLFELEPNGI--GNYILLSNIYASAGRWDDVSKVRKLMRAKGL 508

Query: 476 TKEPGCSSIE-IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
            K PGCS +E   GI HEFFAGD SHP++++I   L+ + ++LK  GY P+ S  A  D 
Sbjct: 509 KKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVA-YDI 567

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
            D+ K+  L  HSE+LA+A G+L    G  IR+ KNLR+C+DCH V    S+I   EI+V
Sbjct: 568 SDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVV 627

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RD  RFHHF+DG CSC ++W
Sbjct: 628 RDNMRFHHFRDGRCSCGNFW 647


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/636 (38%), Positives = 365/636 (57%), Gaps = 40/636 (6%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL 61
           A A ++  P T + HS++I N    +    N  +L+ +  +C SM         A+    
Sbjct: 268 ACASLKALPQTKEIHSYAIRNGTFADAFVCN--ALIDTYAKCGSMKD-------AVNVFN 318

Query: 62  PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN----SFTWNTLIRACARSVDAKP 116
             + K ++ ++ ++  +        AF +F  +   N      TW+ +I   A+    + 
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQ- 377

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-------- 168
           +A+  FQ+MI  G+  P+  T    L ACA L A SQG + HA+  K+ L+S        
Sbjct: 378 EALDTFQQMILYGSE-PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGD 436

Query: 169 ----DVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALK 222
               D+ ++N+LI  Y+ C     A  +F+++   ER++V+W VMI  + Q+G+ + ALK
Sbjct: 437 GDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALK 496

Query: 223 LFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV-LVNNS 278
           LF  M        P+ YT   I  ACA L++L +G   HAY+ RH  H   + V  V N 
Sbjct: 497 LFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRH--HEYESSVYFVANC 554

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           LIDMY KCG +D AR VF+SMPKR+  SW S++ G+ +HGR + AL  FD++  +  F P
Sbjct: 555 LIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ-KAGFVP 613

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + I+F+ +L AC+H GMV +G DYFD+M ++Y +    +HY C++DLLAR+G +D+A   
Sbjct: 614 DDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKT 673

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MPM+P A IW +LL AC + H++V L+E    +++  +     G Y L+S +YA+AR
Sbjct: 674 IQEMPMEPSAAIWVALLSAC-RVHSNVELAEYALNKLVSMKAE-NDGSYTLISNIYATAR 731

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW DV  +R+LM   G+ K PGCS ++       FF GD SHP + +IY  L+ +  ++K
Sbjct: 732 RWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIK 791

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             GY P+ +  A+ D  D+ K + L  HSE+LA+A G+L   PG PIR+ KNLRVC DCH
Sbjct: 792 VMGYVPE-TNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCH 850

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
                IS+I + EIIVRD +RFHHFK+GSCSC  YW
Sbjct: 851 SAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 164/358 (45%), Gaps = 34/358 (9%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR------------------IIHFAS 79
           S L EC+S++ ++QIH + +   L     +LL  S                   +  + +
Sbjct: 36  SLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLA 95

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
                 A  V  ++    +  WN L+RA         +AI +  RM+  G   PD  T P
Sbjct: 96  CGATSDALSVLERVVPSPAVWWNLLVRAHIEE-GRLDRAIGVSCRMLRAGTK-PDHFTLP 153

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           +ALKAC  L ++  G   H  I   G  S+V++ N+L+  Y+  G L+ A+ VFD +  +
Sbjct: 154 YALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRK 213

Query: 200 SL---VSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSACAGLA 249
            +   +SWN ++ A V+     +AL LF  M  +          D  +  +I  ACA L 
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L      H+Y +R   +    D  V N+LID Y KCGS+  A  VF  M  +D+ SWN+
Sbjct: 274 ALPQTKEIHSYAIR---NGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNA 330

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           ++ G+   G+  AA + F  +  +E+   + IT+  V++    RG   E  D F  MI
Sbjct: 331 MVTGYTQSGKFGAAFELFKNM-RKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI 387


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/611 (38%), Positives = 364/611 (59%), Gaps = 47/611 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRVFY 91
           ++S L +CKS+ +L+QIHAQ ++T L     T+   SR+I F S +     LDYA  VF 
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTV---SRLIAFCSLSGVSGGLDYASSVFS 65

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFA 150
           +I++PNSF +  LI+  + + +   ++++L+ RM+   N     + + P  LKAC  L A
Sbjct: 66  RIQHPNSFIFFALIKGFSDTSNP-VESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLA 124

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
           F +G+Q H  + K  L  D ++ NS++  Y   G ++LA +VFD M  R +VSWN MI  
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184

Query: 211 FVQFGEFDSALKLFRRM--------------------QILFEPDGYTFQSITSACAGLAT 250
           +++ GE + A +LF  M                     +   PDG    S+ SA A L  
Sbjct: 185 YLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGF 244

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNS 309
           +  G W HAY+    +   ++   + ++LIDMY KCG ++ A  VF S+  +R++  WNS
Sbjct: 245 VEEGKWLHAYV--SMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNS 302

Query: 310 IILGFALHGRAEAALKYF---DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +I G A+HG A  AL  F   +R+ +E    PN ITF+G+LS C+H G+V EG+ YF+ M
Sbjct: 303 MISGLAIHGLAREALDIFVEMERMDIE----PNEITFLGLLSTCSHGGLVEEGQFYFESM 358

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +Y I P ++HYGC++DL  RAG +++AL ++ NMP + D + W+++L A   KH  + 
Sbjct: 359 HEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSAS-MKHGHIE 417

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           + +  A + IE      S  YVLLS +YA A RW+DV  +R +M  +GV K  GCSS+ +
Sbjct: 418 IGKSAALRAIELAPDDSSS-YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLV 476

Query: 487 DGIAHEFFAG---DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           +G  HEF  G   D+S+  + Q+   +  +  +LK +GY PD +Q  ++D  D+GK+S L
Sbjct: 477 NGKVHEFLLGKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDLTQV-LLDIEDEGKESLL 533

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
            LHSE++AIA G++++    PI + KNLRVC DCH   KL+S+++N +II+RD+ RFHHF
Sbjct: 534 NLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHF 593

Query: 604 KDGSCSCMDYW 614
           ++G CSC +YW
Sbjct: 594 ENGCCSCNEYW 604



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 27/309 (8%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+L +  +  +  + +Q+H Q L+T L       +  S +  +  F +++ A RVF ++ 
Sbjct: 114 SVLKACGKLLAFDEGRQVHGQVLKTHL--WFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------------------NVLPDKH 136
           N +  +WN++I    ++ + +  A  LF  M E+                    + PD  
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIE-LASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGP 230

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDN 195
                L A A L    +GK  HA++    + +S  +I ++LI  Y+ CG+++ A  VF +
Sbjct: 231 AIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRS 290

Query: 196 ML-ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253
           +   R++  WN MI      G    AL +F  M+ +  EP+  TF  + S C+    +  
Sbjct: 291 ISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEE 350

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIIL 312
           G +    +  H  + +V  +     +ID++ + G L+ A  V ++MP + DL +W +I+ 
Sbjct: 351 GQFYFESM--HEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILS 408

Query: 313 GFALHGRAE 321
               HG  E
Sbjct: 409 ASMKHGHIE 417


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/670 (37%), Positives = 371/670 (55%), Gaps = 83/670 (12%)

Query: 16  HSHSIFNNNRNEGSFNNHSSLLSSL-TECK-SMSQLKQIHAQALRTALPQQHKTLLIYSR 73
           H H I   +  E S  +H ++L  L T+C  S+  LKQ HA  LRT   Q   + +  S 
Sbjct: 16  HHHLIPKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQD--SYIAGSL 73

Query: 74  IIHFAS-----FADLDYAFRVF----------------YQIEN----------------- 95
           +  +A+     +   + + RVF                  IEN                 
Sbjct: 74  VKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAH 133

Query: 96  --PNSFTWNTLIRACARS------------------------VDAKPQAIVLFQRMIEQG 129
             PN +T+  +++AC+ S                        + +  +    F R++E  
Sbjct: 134 SRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEAR 193

Query: 130 NVLPDKHTFPFALKACAYLFAFSQ-GKQAHAHIFKRGLVSDVYIN--NSLIHFYASCGHL 186
            +L DK     A+   A +  + + G+   A     G+     I+  N++I  ++ CG +
Sbjct: 194 RILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMV 253

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSAC 245
           ++A + FD M ER  +SW+ MID ++Q G F  AL++F +MQ     P  +   S+ SAC
Sbjct: 254 EVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  L  G W H Y  R+   S+  D ++  SL+DMY KCG +D+A +VFE M  ++++
Sbjct: 314 ANLGALDQGRWIHTYAKRN---SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVS 370

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN++I G A+HGRAE A+  F ++       PN ITFVGVL+AC H G+V +G   F+ 
Sbjct: 371 SWNAMIGGLAMHGRAEDAIDLFSKM----DIYPNEITFVGVLNACAHGGLVQKGLTIFNS 426

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M  EY + P +EHYGC+VDLL RAG + EA  +VS++P +P   +W +LL AC +KH +V
Sbjct: 427 MRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGAC-RKHGNV 485

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L E V K ++E E    SG Y LLS +YA A RW +VG VRKLM ++G+   PG S I+
Sbjct: 486 ELGERVGKILLELEPQ-NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIID 544

Query: 486 ID-GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           +  G  H+F  GD SHPQ K IY  LD + E+L+  GY PD SQ  + D  ++ K++++ 
Sbjct: 545 LGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV-LFDIDEEEKETAVW 603

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAI  G++N  PG  IR+ KNLRVC+DCH  TKLIS+++N EIIVRDR R+HHF+
Sbjct: 604 QHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFR 663

Query: 605 DGSCSCMDYW 614
           +G+CSC D+W
Sbjct: 664 NGACSCKDFW 673


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 357/625 (57%), Gaps = 41/625 (6%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           PP   T   +  N  R+          +S L  CK  +Q+  I+A+ +R      H+   
Sbjct: 18  PPNSGTKPKNTPNRRRH---------FISLLQNCKHNNQIPPIYAKIIRN---HHHQDPF 65

Query: 70  IYSRIIHFAS-FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           +   ++   S    + YA ++F   +NPN + +  LI     S       I L+ +MI  
Sbjct: 66  VVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSC-YYTDGIHLYYQMI-N 123

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            +++PD +     LKAC    A  +G++ H+ + K GL S+  I   LI  Y  CG  + 
Sbjct: 124 SSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFED 183

Query: 189 ANKVFDNMLERSLVS------------------WNVMIDAFVQFGEFDSALKLFRRMQIL 230
           A +VFD M ER +V+                  W  MID  V+ GE + AL++FR MQ  
Sbjct: 184 ARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRE 243

Query: 231 -FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
              P+  T   + SAC+ L  L LG W  +Y+ +H    +  +  V  +LI+MY +CG +
Sbjct: 244 DVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKH---RIELNHFVGGALINMYSRCGDI 300

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           D A++VFE M ++++ ++NS+I+GFALHG++  A++ F R ++++ F+P+S+TFVGVL+A
Sbjct: 301 DEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELF-RGLIKQGFTPSSVTFVGVLNA 359

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C+H G+   G + F  M  +Y I P +EHYGC+VDLL R G ++EA   +  M + PD V
Sbjct: 360 CSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHV 419

Query: 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
           +  +LL AC K H ++ L+E VAK ++  +    SG Y+LLS  Y+S+ +W +   VR  
Sbjct: 420 MLGALLSAC-KIHGNLELAERVAKSLVACKNAD-SGTYILLSNAYSSSGKWKEAAEVRTN 477

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529
           M ++G+ KEPGCSSIE++   HEF  GD  HPQ ++IY  L+ +++ L+  GYTP  ++ 
Sbjct: 478 MREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPA-TEV 536

Query: 530 AMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
            + D     K+ +L +HSERLAI  G+++ KP   +RV KNLRVC DCH   KLIS I  
Sbjct: 537 VLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITR 596

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            +I+VRDR RFHHF++G CSC DYW
Sbjct: 597 RKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/535 (42%), Positives = 335/535 (62%), Gaps = 14/535 (2%)

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFAL 142
           YA  +F QI  P +F +N+LIRA + +  A P    +++++RM+  G+ LP+  T  FAL
Sbjct: 79  YARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 138

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSL 201
           KAC+ + A  +G+Q H+  F+RGL    Y+   L++ YA C  + LA  VFD M+ +++L
Sbjct: 139 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 198

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
            +W+ MI  + + G  + AL LFR MQ     PD  T  S+ SACA    L LG W HA+
Sbjct: 199 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAF 258

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           I R     +  D+ ++ +LIDMY KCG ++ A+ VF++M +RD  +W+++I+G A+HG  
Sbjct: 259 IDRK---GITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLV 315

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           E ALK F R++ E    PN++TF+GVLSAC H G+V+EGR Y+  M  E  I P +E+YG
Sbjct: 316 EVALKLFSRML-ELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTM-QELGIKPSMENYG 373

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VDL  R+  +DEA   V+ M + P++VIWR+LL A  K      + +  +K+++E E 
Sbjct: 374 CMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVAS-KNSNRFDIVQSASKKLLELEP 432

Query: 441 GICSGV-YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
             C+   YVLLS +YAS  +W+ V  +RK M +  V    GCSSIEI+G  H+F   D S
Sbjct: 433 --CNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDS 490

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP+ K+I   L  I +++   G+ P ++ A + D  ++ K+ +L  HSERLAIA G+L  
Sbjct: 491 HPEIKEIRLLLREIADRVVRAGHKP-WTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKT 549

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K    IRV KNLR C DCHEV K++S+ ++ EIIVRDR RFH F +GSCSC D+W
Sbjct: 550 KAPHVIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/594 (40%), Positives = 350/594 (58%), Gaps = 17/594 (2%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFA 81
            EG   +  + ++ L+ C S++ L   KQIHAQ + +   + H  + + + +   +    
Sbjct: 239 QEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVES---EHHSDVRVSTALTKMYIKCG 295

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            +  A  VF  + N +   WNT+I     S   + +A  +F RM+++  V PD+ T+   
Sbjct: 296 AVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLE-EAHGMFHRMLKE-CVAPDRVTYLAI 353

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L ACA     + GK+ HA   K GLVSDV   N+LI+ Y+  G +  A +VFD M +R +
Sbjct: 354 LSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 413

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VSW  ++  +   G+   +   F++M Q   E +  T+  +  AC+    L  G   HA 
Sbjct: 414 VSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAE 473

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           +++     +  D+ V N+L+ MY KCGS++ A +V E M  RD+ +WN++I G A +GR 
Sbjct: 474 VVKA---GIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRG 530

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             AL+ F+ +  EE   PN+ TFV V+SAC  R +V EGR  F  M  +Y I P  +HY 
Sbjct: 531 LEALQKFEVMKSEE-MRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYA 589

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VD+LARAG++ EA  ++  MP KP A +W +LL A C+ H +V + E+ A+Q ++ E 
Sbjct: 590 CMVDILARAGHLGEAEDVILTMPFKPSAAMWGALL-AACRAHGNVEIGEQAAEQCLKLEP 648

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              +G YV LS +YA+A  W DV  +RKLM ++GV KEPG S IE+ G  H F AGD SH
Sbjct: 649 Q-NAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSH 707

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           P+T++IY  L+ + +++KS GY PD ++  M D   +GK+ ++  HSE+LAIA G+++  
Sbjct: 708 PRTEEIYSELEALTKQIKSLGYVPD-TRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTP 766

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P  PIRV KNLRVC DCH  TK IS+I   EII RD  RFHHFK+G CSC DYW
Sbjct: 767 PETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 204/386 (52%), Gaps = 13/386 (3%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           ++  LL S  + K ++  KQ+H   LR  +  +    +I + +  +     ++ A R+F 
Sbjct: 46  DYVKLLQSCVKAKDLAVGKQVHEHILRFGM--KPNVYIINTLLKLYVHCGSVNEARRLFD 103

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +  N +  +WN +I   A       +A  LF  M ++G + PDK TF   L AC+   A 
Sbjct: 104 KFSNKSVVSWNVMISGYAHR-GLGQEAFNLFTLMQQEG-LEPDKFTFVSILSACSSPAAL 161

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           + G++ H  + + GL ++  + N+LI  YA CG +  A +VFD M  R  VSW  +  A+
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            + G    +LK +  M Q    P   T+ ++ SAC  LA L  G   HA I+    HS  
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS-- 279

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            DV V+ +L  MY KCG++  AR+VFE +P RD+ +WN++I G    G+ E A   F R+
Sbjct: 280 -DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM 338

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDLLARA 389
            ++E  +P+ +T++ +LSAC   G ++ G++     + +  ++ V   +G  L+++ ++A
Sbjct: 339 -LKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDV--RFGNALINMYSKA 395

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLL 415
           G++ +A  +   MP K D V W +L+
Sbjct: 396 GSMKDARQVFDRMP-KRDVVSWTALV 420



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 8/296 (2%)

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           + Q + ++G+ + D + +   L++C      + GKQ H HI + G+  +VYI N+L+  Y
Sbjct: 31  VLQYLHQKGSQV-DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
             CG ++ A ++FD    +S+VSWNVMI  +   G    A  LF  MQ    EPD +TF 
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           SI SAC+  A L+ G   H  ++   +  L  +  V N+LI MY KCGS+  AR+VF++M
Sbjct: 150 SILSACSSPAALNWGREVHVRVM---EAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
             RD  SW ++   +A  G A+ +LK +  + ++E   P+ IT++ VLSAC     + +G
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAM-LQEGVRPSRITYMNVLSACGSLAALEKG 265

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +     ++   + + V      L  +  + G + +A  +   +P + D + W +++
Sbjct: 266 KQIHAQIVESEHHSDVRVSTA-LTKMYIKCGAVKDAREVFECLPNR-DVIAWNTMI 319


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/598 (40%), Positives = 348/598 (58%), Gaps = 16/598 (2%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHF 77
           FN     G   N  + +S L  C   S LKQ   IH + ++       +     + +  +
Sbjct: 395 FNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRT--ALLSMY 452

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A    L  A  VF +I   N   WN +I A  +  +    A+  FQ ++++G + PD  T
Sbjct: 453 AKCGSLMDARNVFERISKQNVVAWNAMITAYVQH-EKYDNAVATFQALLKEG-IKPDSST 510

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F   L  C    A   GK   + I + G  SD++I N+L+  + +CG L  A  +F++M 
Sbjct: 511 FTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP 570

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           ER LVSWN +I  FVQ GE   A   F+ MQ    +PD  TF  + +ACA    L+ G  
Sbjct: 571 ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR 630

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA I    + +L  DV+V   LI MY KCGS+D A  VF ++PK+++ SW S+I G+A 
Sbjct: 631 LHALI---TEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQ 687

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HGR + AL+ F ++  +E   P+ ITFVG LSAC H G++ EG  +F+ M  ++NI P +
Sbjct: 688 HGRGKEALELFCQMQ-QEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRM 745

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           EHYGC+VDL  RAG + EA+  ++ M +KPD+ +W +LL AC + H  V L+E+VA++ +
Sbjct: 746 EHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGAC-QVHLDVELAEKVAQKKL 804

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
           E +     GVYV+LS +YA+A  W +V  +RK+M D+GV K+PG S IE+DG  H F + 
Sbjct: 805 ELDPND-DGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSD 863

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           D +HPQ ++I+  L  +  ++K  GY PD ++  + D  D  K+ +L  HSERLAIA G+
Sbjct: 864 DKTHPQIEEIHAELGRLHMEMKKLGYVPD-TRYVLHDVEDSEKEHALCHHSERLAIAYGL 922

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L   P  PI + KNLRVC DCH  TKLIS+I   +II RD  RFHHFKDG CSC D+W
Sbjct: 923 LKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 177/334 (52%), Gaps = 9/334 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A +VF  +   +  TW ++I   AR    K QA  LFQ M E+G V PDK  F   L
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFK-QACNLFQVMEEEG-VQPDKVAFVSLL 313

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           KAC +  A  QGK+ HA + + GL +++Y+  +L+  Y  CG ++ A +VF+ +  R++V
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVV 373

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  MI  F Q G  + A   F +M +   EP+  TF SI  AC+  + L  G   H  I
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++      +TD  V  +L+ MY KCGSL  AR VFE + K+++ +WN++I  +  H + +
Sbjct: 434 IK---AGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYD 490

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F  L ++E   P+S TF  +L+ C     +  G+ +   +I        L     
Sbjct: 491 NAVATFQAL-LKEGIKPDSSTFTSILNVCKSPDALELGK-WVQSLIIRAGFESDLHIRNA 548

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           LV +    G++  A++L ++MP + D V W +++
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMPER-DLVSWNTII 581



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 203/389 (52%), Gaps = 13/389 (3%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRV 89
             +SSLL    + K++   ++IH         +    + +++ +I  +A   + + A ++
Sbjct: 105 QTYSSLLQLCIKHKNLGDGERIHNH---IKFSKIQPDIFMWNMLISMYAKCGNTNSAKQI 161

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++ + + ++WN L+    +    + +A  L ++M++ G V PDK+TF + L ACA   
Sbjct: 162 FDEMPDKDVYSWNLLLGGYVQHRRYE-EAFRLHEQMVQDG-VKPDKYTFVYMLNACADAK 219

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
              +G +  + I   G  +D+++  +LI+ +  CG +D A KVF+N+  R L++W  MI 
Sbjct: 220 NVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMIT 279

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
              +  +F  A  LF+ M+    +PD   F S+  AC     L  G   HA   R  +  
Sbjct: 280 GLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHA---RMKEVG 336

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L T++ V  +L+ MY KCGS++ A +VF  +  R++ SW ++I GFA HGR E A  +F+
Sbjct: 337 LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFN 396

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           ++ +E    PN +TF+ +L AC+    + +GR   D +I    IT        L+ + A+
Sbjct: 397 KM-IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAK 454

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            G++ +A ++   +  K + V W +++ A
Sbjct: 455 CGSLMDARNVFERIS-KQNVVAWNAMITA 482



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 151/282 (53%), Gaps = 7/282 (2%)

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T+   L+ C        G++ H HI    +  D+++ N LI  YA CG+ + A ++FD
Sbjct: 104 RQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFD 163

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSL 253
            M ++ + SWN+++  +VQ   ++ A +L  +M Q   +PD YTF  + +ACA    +  
Sbjct: 164 EMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDK 223

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G    + IL   +    TD+ V  +LI+M+ KCG +D A +VF ++P+RDL +W S+I G
Sbjct: 224 GGELFSLIL---NAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITG 280

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
            A H + + A   F +++ EE   P+ + FV +L ACNH   + +G+     M  E  + 
Sbjct: 281 LARHRQFKQACNLF-QVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVGLD 338

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +     L+ +  + G++++AL  V N+    + V W +++
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALE-VFNLVKGRNVVSWTAMI 379


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/533 (43%), Positives = 322/533 (60%), Gaps = 18/533 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L YA+ VF  I NPN FTWNT+ R  A S +  P A+  +++MI    + PD HT+PF L
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSP-ALRFYRQMI-VSRIEPDTHTYPFLL 137

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           KA +      +G+  H+   + G  S V++ NSL+H YA+CG  + A+ VF+ M +R LV
Sbjct: 138 KAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLV 197

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +   +I+ F   G    AL LFR M     EPDG+T  S+ SA A L  L LG   H Y+
Sbjct: 198 AXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYL 257

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+     L  +  V NSL+D+Y KC +      ++E   +R+  SW S+I+G A++G  E
Sbjct: 258 LKV---GLRENSHVTNSLLDLYAKCDA------IWEX--ERNAVSWTSLIVGLAVNGFGE 306

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F R +  +   P+ ITFVGVL AC+H GM+ EG DYF  M  E+ I P +EHYGC
Sbjct: 307 EALELF-REMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGC 365

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDLL+RAG + +A   + NMP++P+AV WR+LL AC   H  + L E     +++ E  
Sbjct: 366 MVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACT-IHGHLGLGETARSHLLKLEPK 424

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             SG YVLLS +Y S  RW DV L+R+ M   GV K  G S +E+    +EF  G+ SHP
Sbjct: 425 -HSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHP 483

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           Q++ +Y  L+ I E LK  GY P ++   + D  ++ K+ +L  HSE+ AIA   LN  P
Sbjct: 484 QSQDVYALLEKITELLKLEGYVP-HTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAP 542

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  IRV KNLRVC DCH   KL++++++ EI++RDR RFHHF+ GSCSC DYW
Sbjct: 543 GTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/638 (38%), Positives = 361/638 (56%), Gaps = 46/638 (7%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL 61
           A   ++  P T + H ++I N    +    N  +L+ +  +C  M         A++   
Sbjct: 274 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGN--ALIDAYAKCGLMEN-------AVKVFN 324

Query: 62  PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN----SFTWNTLI-----RACARS 111
             + K ++ ++ ++  ++   + + AF +F  +   N      TW  +I     R C+  
Sbjct: 325 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSH- 383

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--- 168
                +A+ LF++MI  G+ LP+  T    L ACA L AFSQG + HA+  K  L++   
Sbjct: 384 -----EALNLFRQMIFSGS-LPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDN 437

Query: 169 -------DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDS 219
                  D+ + N+LI  Y+ C     A  +FD+  + ER++V+W VMI    Q+G+ + 
Sbjct: 438 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 497

Query: 220 ALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           ALKLF  M        P+ YT   I  ACA LA + +G   HAY+LRH  +   +   V 
Sbjct: 498 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE-SSAYFVA 556

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N LIDMY KCG +D AR VF+SM ++   SW S++ G+ +HGR   AL  FD++  +  F
Sbjct: 557 NCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR-KAGF 615

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ ITF+ VL AC+H GMV +G  YFD M  +Y +TP  EHY C +DLLAR+G +D+A 
Sbjct: 616 VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAW 675

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             V +MPM+P AV+W +LL AC + H++V L+E    +++E       G Y L+S +YA+
Sbjct: 676 RTVKDMPMEPTAVVWVALLSAC-RVHSNVELAEHALNKLVEMNAEN-DGSYTLISNIYAT 733

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW DV  +R LM   G+ K PGCS ++       FF GD SHP + QIY  L+ + ++
Sbjct: 734 AGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDR 793

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +K+ GY P+ +  A+ D  ++ K + L  HSE+LA+A G+L   PG PIR+ KNLRVC D
Sbjct: 794 IKAMGYVPE-TNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGD 852

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH     IS+I + EI+VRD +RFHHFK+GSCSC  YW
Sbjct: 853 CHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 34/362 (9%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRT------------ALPQQHKTLLIYSR------II 75
           S   S L ECKS + + QIH Q + +            +LP       I  R      + 
Sbjct: 38  SHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVA 97

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            + +    DYA  V  ++    +  WN LIR   +       AI +  RM+  G   PD 
Sbjct: 98  SYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQ-GRLDSAINVSCRMLRAGT-RPDH 155

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T P  LKAC  L ++  G   H  I   G  S+V+I N+L+  Y+ CG L+ A+ +FD 
Sbjct: 156 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 215

Query: 196 MLERSL---VSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSAC 245
           + +R +   +SWN ++ A V+     +AL LF +M ++          D  +  +I  AC
Sbjct: 216 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 275

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
             L  +      H   +R   +    DV V N+LID Y KCG ++ A +VF  M  +D+ 
Sbjct: 276 GSLKAVPQTKEVHGNAIR---NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 332

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN+++ G++  G  EAA + F  +  +E+   + +T+  V++  + RG   E  + F  
Sbjct: 333 SWNAMVAGYSQSGNFEAAFELFKNM-RKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 391

Query: 366 MI 367
           MI
Sbjct: 392 MI 393


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 365/638 (57%), Gaps = 50/638 (7%)

Query: 11  PTPQTHSHSIFNNNRNEGSFN--NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
           P+P+ H     N+N N  S    +   ++S L   + ++Q+  IHAQ +R    Q     
Sbjct: 29  PSPKPHP----NSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQD--PF 82

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           +++  +   +    +DYA R+F    NPN + +  LI     S +   +AI L+ RM+ +
Sbjct: 83  MVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYL-EAIQLYSRMLHE 141

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            ++LPD +     LKAC    A  +G++ H+   K G  S+  +   ++  Y  CG L  
Sbjct: 142 -SILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 200

Query: 189 ANKVFDNMLE------------------------------RSLVSWNVMIDAFVQFGEFD 218
           A +VF+ M E                              +  V W  MID FV+  E +
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETN 260

Query: 219 SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            AL+ FR MQ     P+ +T   + SAC+ L  L +G W H+Y+ +     +  ++ V N
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF---EIELNLFVGN 317

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +LI+MY +CGS+D A+ VF+ M  RD+ ++N++I G +++G++  A++ F R++V     
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF-RVMVGRRLR 376

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P ++TFVGVL+AC+H G+V  G + F  M  +Y + P +EHYGC+VDLL R G ++EA  
Sbjct: 377 PTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYD 436

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           L+  M M PD ++  +LL AC K H ++ L E+VAK+ +E  G   SG YVLLS VYAS+
Sbjct: 437 LIRTMKMTPDHIMLGTLLSAC-KMHKNLELGEQVAKE-LEDRGQADSGTYVLLSHVYASS 494

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            +W +   VR  M + G+ KEPGCSSIE++   HEF  GD  HPQ ++IY  L+ ++  L
Sbjct: 495 GKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLL 554

Query: 518 KSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +  GY P+  +  ++ +++DG K+ +L +HSERLAI  G+++ +P   IRV KNLRVC D
Sbjct: 555 RLEGYHPE--KEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYD 612

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH   KLI++I   +I+VRDR RFH+F++G+CSC DYW
Sbjct: 613 CHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 365/623 (58%), Gaps = 59/623 (9%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRVFY 91
           ++S L +CKS+ +L+QIHAQ ++T L     T+   SR+I F S +     LDYA  VF 
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTV---SRLIAFCSLSGVSGGLDYASSVFS 65

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFA 150
           +I++PNSF +  LI+  + + +   ++++L+ RM+   N     + + P  LKAC  L A
Sbjct: 66  RIQHPNSFIFFALIKGFSDTSNP-VESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLA 124

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
           F +G+Q H  + K  L  D ++ NS++  Y   G ++LA +VFD M  R +VSWN MI  
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184

Query: 211 FVQFGEFD-------------------------------SALKLFRRMQIL-FEPDGYTF 238
           +++ GE +                                AL LFR M  L   PDG   
Sbjct: 185 YLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAI 244

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+ SA A L  +  G W HAY+    +   ++   + ++LIDMY KCG ++ A  VF S
Sbjct: 245 VSVLSAIADLGFVEEGKWLHAYV--SMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRS 302

Query: 299 MP-KRDLTSWNSIILGFALHGRAEAALKYF---DRLVVEESFSPNSITFVGVLSACNHRG 354
           +  +R++  WNS+I G A+HG A  AL  F   +R+ +E    PN ITF+G+LS C+H G
Sbjct: 303 ISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIE----PNEITFLGLLSTCSHGG 358

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V EG+ YF+ M  +Y I P ++HYGC++DL  RAG +++AL ++ NMP + D + W+++
Sbjct: 359 LVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAI 418

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L A   KH  + + +  A + IE      S  YVLLS +YA A RW+DV  +R +M  +G
Sbjct: 419 LSAS-MKHGHIEIGKSAALRAIELAPDDSSS-YVLLSNIYAKAGRWDDVAKIRLMMRQRG 476

Query: 475 VTKEPGCSSIEIDGIAHEFFAG---DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
           V K  GCSS+ ++G  HEF  G   D+S+  + Q+   +  +  +LK +GY PD +Q  +
Sbjct: 477 VKKIAGCSSMLVNGKVHEFLLGKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDLTQV-L 533

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
           +D  D+GK+S L LHSE++AIA G++++    PI + KNLRVC DCH   KL+S+++N +
Sbjct: 534 LDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQ 593

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           II+RD+ RFHHF++G CSC +YW
Sbjct: 594 IIMRDQNRFHHFENGCCSCNEYW 616


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/638 (38%), Positives = 361/638 (56%), Gaps = 46/638 (7%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL 61
           A   ++  P T + H ++I N    +    N  +L+ +  +C  M         A++   
Sbjct: 281 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGN--ALIDAYAKCGLMEN-------AVKVFN 331

Query: 62  PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN----SFTWNTLI-----RACARS 111
             + K ++ ++ ++  ++   + + AF +F  +   N      TW  +I     R C+  
Sbjct: 332 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSH- 390

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--- 168
                +A+ LF++MI  G+ LP+  T    L ACA L AFSQG + HA+  K  L++   
Sbjct: 391 -----EALNLFRQMIFSGS-LPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDN 444

Query: 169 -------DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDS 219
                  D+ + N+LI  Y+ C     A  +FD+  + ER++V+W VMI    Q+G+ + 
Sbjct: 445 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 504

Query: 220 ALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           ALKLF  M        P+ YT   I  ACA LA + +G   HAY+LRH  +   +   V 
Sbjct: 505 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE-SSAYFVA 563

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N LIDMY KCG +D AR VF+SM ++   SW S++ G+ +HGR   AL  FD++  +  F
Sbjct: 564 NCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR-KAGF 622

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ ITF+ VL AC+H GMV +G  YFD M  +Y +TP  EHY C +DLLAR+G +D+A 
Sbjct: 623 VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAW 682

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             V +MPM+P AV+W +LL AC + H++V L+E    +++E       G Y L+S +YA+
Sbjct: 683 RTVKDMPMEPTAVVWVALLSAC-RVHSNVELAEHALNKLVEMNAE-NDGSYTLISNIYAT 740

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW DV  +R LM   G+ K PGCS ++       FF GD SHP + QIY  L+ + ++
Sbjct: 741 AGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDR 800

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +K+ GY P+ +  A+ D  ++ K + L  HSE+LA+A G+L   PG PIR+ KNLRVC D
Sbjct: 801 IKAMGYVPE-TNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGD 859

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH     IS+I + EI+VRD +RFHHFK+GSCSC  YW
Sbjct: 860 CHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 34/362 (9%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRT------------ALPQQHKTLLIYSR------II 75
           S   S L ECKS + + QIH Q + +            +LP       I  R      + 
Sbjct: 45  SHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVA 104

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            + +    DYA  V  ++    +  WN LIR   +       AI +  RM+  G   PD 
Sbjct: 105 SYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQ-GRLDSAINVSCRMLRAGT-RPDH 162

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T P  LKAC  L ++  G   H  I   G  S+V+I N+L+  Y+ CG L+ A+ +FD 
Sbjct: 163 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 222

Query: 196 MLERSL---VSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSAC 245
           + +R +   +SWN ++ A V+     +AL LF +M ++          D  +  +I  AC
Sbjct: 223 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 282

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
             L  +      H   +R   +    DV V N+LID Y KCG ++ A +VF  M  +D+ 
Sbjct: 283 GSLKAVPQTKEVHGNAIR---NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 339

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN+++ G++  G  EAA + F  +  +E+   + +T+  V++  + RG   E  + F  
Sbjct: 340 SWNAMVAGYSQSGNFEAAFELFKNM-RKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 398

Query: 366 MI 367
           MI
Sbjct: 399 MI 400


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 333/576 (57%), Gaps = 43/576 (7%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S I+ F    +++ A ++F +++  +  +W+ LI +C    +   +A++LF+ M   G +
Sbjct: 228 SMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALI-SCYEQNEMYEEALILFKEMNANG-I 285

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC-------- 183
           + D+      L AC+ L     GK  H  + K G+ + V + N+LIH Y+SC        
Sbjct: 286 MVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQK 345

Query: 184 -----------------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
                                  G ++ A  +FD+M ++  VSW+ MI  + Q   F   
Sbjct: 346 LFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTET 405

Query: 221 LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           L LF+ MQI   +PD     S+ SAC  LA L  G W HAYI ++    L  ++++  +L
Sbjct: 406 LVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKN---GLKINIILGTTL 462

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           I+MY K G ++ A +VF+ + ++ +++WN++ILG A++G  + +LK F  +  E   +PN
Sbjct: 463 INMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMK-EHGVTPN 521

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            ITFV VL AC H G+V EG  +F+ MI E+ I P ++HYGC+VDLL RAG + EA  L+
Sbjct: 522 EITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELI 581

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
            +MPM PD   W +LL AC KK+      E + ++++E       G  VLLS +YAS   
Sbjct: 582 ESMPMAPDVSTWGALLGAC-KKYGDNETGERIGRKLVELHPD-HDGFNVLLSNIYASKGN 639

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W DV  VR +M   GV K PGCS IE  G  HEF AGD +HPQ + I   LD + +KLK 
Sbjct: 640 WVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKL 699

Query: 520 RGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
            GY PD  + ++ +DE  + K+++L  HSE+LAIA G++ + P  PIR+ KNLR+C DCH
Sbjct: 700 EGYAPDTREVSLDIDE--EEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCH 757

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              KLIS+ FN EI+VRDR RFHHFK GSCSCMDYW
Sbjct: 758 TAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 191/415 (46%), Gaps = 81/415 (19%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQ 92
           L + L +C+++ Q  QI +Q + +      K     SR++ F++   F +++ ++++F  
Sbjct: 29  LETHLQKCQNIKQFNQILSQMILSGF---FKDSFAASRLLKFSTELPFININQSYQIFSH 85

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           IENPN F  NT+++   +  ++  +AI +++ M+E  NV  D +T+P   ++C+   A  
Sbjct: 86  IENPNGFICNTMMKGYMQR-NSPCKAIWVYKFMLES-NVAADNYTYPILFQSCSIRLAEF 143

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GK    H+ K G  SDVYI N+LI+ YA CG+L  A KVFD      +VSWN M+  +V
Sbjct: 144 DGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYV 203

Query: 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             G  + A  ++ RM     P+                                     +
Sbjct: 204 LVGNVEEAKDVYDRM-----PE------------------------------------RN 222

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V+ +NS+I ++ K G+++ A ++F  M ++DL SW+++I  +  +   E AL  F  +  
Sbjct: 223 VIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNA 282

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGR----DYFDVMINEY-NITPVLEHY-------- 379
                 + +  + VLSAC+   +V  G+        V I  Y N+   L H         
Sbjct: 283 -NGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 380 --------GCLVDLLA---------RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                    C +D ++         + G I++A  L  +MP K D V W +++  
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDK-DNVSWSAMISG 395



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 126/285 (44%), Gaps = 22/285 (7%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL--ANKVFDNMLER 199
           L+ C  +  F+Q     + +   G   D +  + L+ F      +++  + ++F ++   
Sbjct: 33  LQKCQNIKQFNQ---ILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENP 89

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           +    N M+  ++Q      A+ +++ M +     D YT+  +  +C+       G    
Sbjct: 90  NGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQ 149

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            ++L+       +DV + N+LI+MY  CG+L  AR+VF+     D+ SWNS++ G+ L G
Sbjct: 150 DHVLKV---GFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVG 206

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             E A   +DR+      + NS+  +        +G V E    F+ M  +  ++     
Sbjct: 207 NVEEAKDVYDRMPERNVIASNSMIVL-----FGKKGNVEEACKLFNEMKQKDLVS----- 256

Query: 379 YGCLVDLLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCK 420
           +  L+    +    +EAL L   M    +  D V+  S+L AC +
Sbjct: 257 WSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSR 301


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/640 (37%), Positives = 362/640 (56%), Gaps = 63/640 (9%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL---- 83
           G  +  SSL   +  C+++  L QIHA  +++    Q +  L  + I+ F + +DL    
Sbjct: 11  GGNSPASSLFPQINTCRTIRDLSQIHAVFIKSG---QIRDTLAAAEILRFCATSDLHHRD 67

Query: 84  -DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFA 141
            DYA ++F Q+   N F+WNT+IR  + S + K   AI LF  M+    + P++ TFP  
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD-------------- 187
           LKACA      QGKQ H    K G   D ++ ++L+  Y  CG +               
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 188 -------------------------------LANKVFDNMLERSLVSWNVMIDAFVQFGE 216
                                           A  +FD M +RS+VSWN MI  + Q G 
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 217 FDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           F  A+++FR M+      P+  T  S+  A + L +L LG W H Y     D  +  D +
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAE---DSGIRIDDV 304

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           + ++LIDMY KCG ++ A  VFE +P+ ++ +W+++I GFA+HG+A  A+  F ++  + 
Sbjct: 305 LGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR-QA 363

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+ + ++ +L+AC+H G+V EGR YF  M++   + P +EHYGC+VDLL R G +DE
Sbjct: 364 GVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDE 423

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   + NMP+KPD VIW++LL AC + H +V + + VA  +++      SG YV LS +Y
Sbjct: 424 AEEFILNMPIKPDDVIWKALLGAC-RMHRNVEMGKRVANILMDMVPHD-SGAYVALSNMY 481

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           AS   W++V  +R  M +  + K+PGCS I+IDG+ HEF   D SHP+ K+I   L  I 
Sbjct: 482 ASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEIS 541

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           +KL+  GY P  +Q  +  E +D K+++L  HSE++A A G+++  PG PIR+ KNLR+C
Sbjct: 542 DKLRLAGYRPITTQVLLNLEEED-KENALHYHSEKMATAFGLISTSPGKPIRIVKNLRIC 600

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +DCH   KLIS+++  +I VRDR RFHHF+DGSCSCMDYW
Sbjct: 601 EDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 56/345 (16%)

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           Q +   G   P    FP  +  C  +   SQ    HA   K G + D      ++ F A+
Sbjct: 5   QTLYSPGGNSPASSLFP-QINTCRTIRDLSQ---IHAVFIKSGQIRDTLAAAEILRFCAT 60

Query: 183 CG----HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS--ALKLFRRMQI--LFEPD 234
                  LD A+K+F+ M +R+  SWN +I  F +  E  +  A+ LF  M      EP+
Sbjct: 61  SDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPN 120

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRH------------------------------ 264
            +TF S+  ACA    +  G   H   L++                              
Sbjct: 121 RFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFY 180

Query: 265 ---CDHSLVT---------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
               +  +V          +V++ N +ID Y + G    AR +F+ M +R + SWN++I 
Sbjct: 181 KNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMIS 240

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G++ +G  + A++ F  +   E   PN +T V VL A +  G +  G ++  +   +  I
Sbjct: 241 GYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGI 299

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                    L+D+ ++ G I++A+ +   +P + + + W ++++ 
Sbjct: 300 RIDDVLGSALIDMYSKCGIIEKAIMVFERLP-RENVITWSAMING 343


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/549 (40%), Positives = 326/549 (59%), Gaps = 48/549 (8%)

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +I+A A    +   ++ +F  M+     LP+++TF F  KAC       +G+Q   H  K
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 60

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE------- 216
            GL S++++ N++I  YA+ G +D A +VFD  L++ L SWN+MI  +V  GE       
Sbjct: 61  IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 120

Query: 217 ------------------------FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
                                   F  AL LF  M Q    P+ +T  S  +ACA L  L
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 180

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNN----SLIDMYCKCGSLDIARQVF--ESMPKRDLT 305
             G W H YI +       +++ +N     SL+DMY KCG +D A +VF  E   K  + 
Sbjct: 181 DQGRWIHVYIDK-------SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVW 233

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
            WN++I G+A+HG+++ A+  F+++ VE+  SPN +TFV +L+AC+H  +V EGR YF  
Sbjct: 234 PWNAMIGGYAMHGKSKEAIDLFEQMKVEK-VSPNKVTFVALLNACSHGKLVEEGRGYFKS 292

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M + Y I P +EHYGC+VDLL R+G + EA   V NMPM PDA IW +LL AC + H  +
Sbjct: 293 MASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGAC-RIHKDI 351

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
              + + K + E +     G +VLL+ +Y+++ +W++   VR+ +   G  K PGCSSIE
Sbjct: 352 ERGQRIGKIIKELDSDHI-GCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIE 410

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           ++G+ H+F  GD SHPQTKQ+Y FLD +  KLK+ GY P++ +  +  + ++ K+++L  
Sbjct: 411 LNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSK 470

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G++N  PG  IR+ KNLRVC DCHE TK IS+++  EIIVRDR R+HHFKD
Sbjct: 471 HSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKD 530

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 531 GFCSCKDYW 539


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/619 (39%), Positives = 357/619 (57%), Gaps = 18/619 (2%)

Query: 1   MAVAIVQGGPPTPQTHSHS-IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRT 59
           M  A V    P     S++ +   +RN        SLL            K +H Q ++ 
Sbjct: 49  MLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKY 108

Query: 60  ALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118
            L   H  L I + +++ +A+  DL  A  +F ++ + N   W ++I    ++     +A
Sbjct: 109 ML---HSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN-HCPNEA 164

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           ++L+++M E G   PD+ T    + ACA L     G + H+HI +  +     + ++L++
Sbjct: 165 LLLYKKMEEDG-FSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--ILFEPDGY 236
            YA CG L  A +VFD + ++ + +W+ +I  +V+      AL+LFR +       P+  
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 237 TFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           T  ++ SACA L  L  G W H YI R    HS    V +NNSLIDM+ KCG +D A+++
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHS----VSLNNSLIDMFSKCGDIDAAKRI 339

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+SM  +DL SWNS++ GFALHG    AL  F RL+      P+ ITF+GVL+AC+H G+
Sbjct: 340 FDSMSYKDLISWNSMVNGFALHGLGREALAQF-RLMQTTDLQPDEITFIGVLTACSHAGL 398

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V EG+  F  +   Y +    EHYGC+VDLL RAG + EA   +  MP++PD  IW S+L
Sbjct: 399 VQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSML 458

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            AC + + ++ L EE A+ +++ E     GVY+LLS +YA  + WN+V  VR+LM +KG+
Sbjct: 459 GAC-RVYNNLELGEEAARFLLKLEP-TNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGI 516

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            K PGCSS+ ID IAH F AGD SHP+  +I   L  + EKLK  GY  D S+  +++  
Sbjct: 517 QKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEV-LLNID 575

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           D+ K+ S+  HSE+LA+  G+L  + G  I + KNLRVC DCH + KL+S+I+  +I +R
Sbjct: 576 DNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLR 635

Query: 596 DRARFHHFKDGSCSCMDYW 614
           DR RFHHFKDGSCSC DYW
Sbjct: 636 DRNRFHHFKDGSCSCRDYW 654



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 189/350 (54%), Gaps = 15/350 (4%)

Query: 74  IIHFASFADLD--YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           I H  S   L   YA+ VF      +  TWN+++RA   S +   +A+  +  M+E+   
Sbjct: 17  IAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNS-NMPRRALQSYTEMLERSRN 75

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           +PD+ TFP  LK CA L  F  GK  H  + K  L SD+YI  +L++ YA+CG L  A  
Sbjct: 76  VPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARF 135

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           +F+ M  R+ V W  MI  +++    + AL L+++M+   F PD  T  ++ SACA L  
Sbjct: 136 LFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKD 195

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L +GM  H++I R  D  +    ++ ++L++MY KCG L  ARQVF+ +  +D+ +W+++
Sbjct: 196 LGVGMKLHSHI-REMDMKICA--VLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSAL 252

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR---DYFDVMI 367
           I G+  + R+  AL+ F  +    +  PN +T + V+SAC   G +  GR   DY     
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQ 312

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             ++++        L+D+ ++ G+ID A  +  +M  K D + W S+++ 
Sbjct: 313 KGHSVSL----NNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNG 357



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 14/153 (9%)

Query: 277 NSLIDMYCKCGSLDI--ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           N LI      GSL +  A  VF    + D+ +WNS++  F        AL+ +  ++   
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 335 SFSPNSITFVGVLSACN-----HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
              P+  TF  +L  C        G V  G+      + +Y +   L     L+++ A  
Sbjct: 74  RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQ------VVKYMLHSDLYIETTLLNMYAAC 127

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           G++  A  L   M  + + V+W S++    K H
Sbjct: 128 GDLKSARFLFERMGHR-NKVVWTSMISGYMKNH 159


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/592 (39%), Positives = 357/592 (60%), Gaps = 23/592 (3%)

Query: 30  FNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY- 85
           FN+H+   ++L +C      S+ K +H + L+         L +++  I    +   D+ 
Sbjct: 36  FNSHA-YANALQDCIQKDEPSRGKGLHCEILKRG-----GCLDLFAWNILLNMYVKSDFL 89

Query: 86  --AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
             A ++F ++   N+ ++ TLI+  A SV    +AI LF R+  +  VLP++ TF   L+
Sbjct: 90  CDASKLFDEMPERNTISFVTLIQGYAESVRF-LEAIELFVRLHRE--VLPNQFTFASVLQ 146

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           ACA +   + G Q H H+ K GL SDV+++N+L+  YA CG ++ + ++F     R+ V+
Sbjct: 147 ACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT 206

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN +I   VQ G+ + AL+LF  M +   +    T+ S   ACA LA L  G+  H+  +
Sbjct: 207 WNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV 266

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           +    +   D++V N+LIDMY KCGS+  AR VF+ M K+D  SWN++I G+++HG    
Sbjct: 267 KT---TFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGRE 323

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           AL+ FD++  E    P+ +TFVGVLSAC + G++ +G+ YF  MI ++ I P +EHY C+
Sbjct: 324 ALRIFDKMQ-ETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCM 382

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           V LL R G++D+A+ L+  +P +P  ++WR+LL AC   H  + L    A++V+E E   
Sbjct: 383 VWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI-HNDIELGRISAQRVLEMEPQD 441

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
               +VLLS +YA+A+RW++V  VRK M  KGV KEPG S IE  G  H F  GDTSHP+
Sbjct: 442 -KATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPE 500

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            + I G L+ +  K K  GY P+Y+   ++D  D+ K+  L +HSERLA++ GI+    G
Sbjct: 501 VRVINGMLEWLHMKTKKAGYIPNYN-VVLLDVEDEEKERLLWVHSERLALSFGIIRTPSG 559

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PIR+ KNLR+C DCH   K IS++   EI+VRD  RFHHF++G CSC DYW
Sbjct: 560 SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 322/528 (60%), Gaps = 12/528 (2%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +FY     +  +W  +I    R  D + +   LF RMIE+ NV P+  T    + +C ++
Sbjct: 188 LFYGFSQRSIVSWTAMIAGYIRCNDLE-EGERLFVRMIEE-NVFPNDITMLSLIISCGFV 245

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            A   GK+ HA+I + G    + +  +L+  Y  CG +  A  +FD+M  + +++W  MI
Sbjct: 246 GAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMI 305

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A+ Q    D A +LF +M+     P+  T  S+ S CA    L +G W HAYI +    
Sbjct: 306 SAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQ--- 362

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            +  DV++  +LIDMY KCG +  A+++F     RD+ +WN ++ G+ +HG  E ALK F
Sbjct: 363 GVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLF 422

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +       PN ITF+G L AC+H G+V EG+  F+ MI+++ + P +EHYGC+VDLL 
Sbjct: 423 TEMETL-GVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLG 481

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +DEA  ++ +MP+ P+  IW ++L A CK H +  + E  A++++  E   C G  
Sbjct: 482 RAGLLDEAYKMIESMPVTPNIAIWGAML-AACKIHKNSNMGELAARELLALEPQNC-GYK 539

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VL+S +YA+A RWNDV  +RK + D G+ KEPG SSIE++G+ H+F  GDT+HP  ++I 
Sbjct: 540 VLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKIS 599

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
             L  + +KLK  GY PD S     +DE  + K+++L  HSE+LA+A G+++  PG PIR
Sbjct: 600 EMLAEMSKKLKEAGYLPDTSVVLHNIDE--EEKETALNYHSEKLAMAFGLISTAPGTPIR 657

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLR+C DCH VTKL+S+I+   IIVRDR RFHHF++GSCSC  YW
Sbjct: 658 VVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 31/306 (10%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D    P  LKAC+ +     GK+ H    K GLVSDV++ N+L+  Y+ CG L  A  +F
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167

Query: 194 DNMLERSLVSWNVMIDAFVQF----------------------GEFDSALKLFRRM--QI 229
           D M ER +VSW+ MI A++                         + +   +LF RM  + 
Sbjct: 168 DKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN 227

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
           +F P+  T  S+  +C  +  + LG   HAYILR   +     + +  +L+DMY KCG +
Sbjct: 228 VF-PNDITMLSLIISCGFVGAVQLGKRLHAYILR---NGFGMSLALATALVDMYGKCGEI 283

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
             AR +F+SM  +D+ +W ++I  +A     + A + F ++  +    PN +T V +LS 
Sbjct: 284 RSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM-RDNGVRPNELTMVSLLSL 342

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C   G +  G+ +F   I++  +   +     L+D+ A+ G+I  A  L S   +  D  
Sbjct: 343 CAVNGALDMGK-WFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDIC 400

Query: 410 IWRSLL 415
            W  ++
Sbjct: 401 TWNVMM 406



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 35/234 (14%)

Query: 212 VQFGEFDS----ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           V F  F+S    AL  +  M+ L  E D +   S+  AC+ ++   +G   H + ++   
Sbjct: 81  VSFSPFESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVK--- 137

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII-----LGFALHGRA- 320
           + LV+DV V N+L+ MY +CGSL  AR +F+ M +RD+ SW+++I     L +    R+ 
Sbjct: 138 NGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSI 197

Query: 321 ----------------EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG-RDYF 363
                           E   + F R+ +EE+  PN IT + ++ +C   G V  G R + 
Sbjct: 198 VSWTAMIAGYIRCNDLEEGERLFVRM-IEENVFPNDITMLSLIISCGFVGAVQLGKRLHA 256

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            ++ N + ++  L     LVD+  + G I  A  +  +M  K D + W +++ A
Sbjct: 257 YILRNGFGMSLALA--TALVDMYGKCGEIRSARAIFDSMKNK-DVMTWTAMISA 307



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 16  HSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYS 72
           ++  +F   R+ G   N  +++S L+ C     L   K  HA   +  +  +   +L  +
Sbjct: 316 YAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGV--EVDVILKTA 373

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            I  +A   D+  A R+F +  + +  TWN ++         + +A+ LF  M E   V 
Sbjct: 374 LIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGE-KALKLFTEM-ETLGVK 431

Query: 133 PDKHTFPFALKACAYLFAFSQGK---QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
           P+  TF  AL AC++     +GK   +   H F  GLV  V     ++      G LD A
Sbjct: 432 PNDITFIGALHACSHAGLVVEGKGLFEKMIHDF--GLVPKVEHYGCMVDLLGRAGLLDEA 489

Query: 190 NKVFDNM-LERSLVSWNVMIDA 210
            K+ ++M +  ++  W  M+ A
Sbjct: 490 YKMIESMPVTPNIAIWGAMLAA 511


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/591 (41%), Positives = 348/591 (58%), Gaps = 21/591 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI----YSRIIHFASFADLDYAFRV 89
           + ++S +  C  +  L+  HA  LR  LP+      +     S     A+     YA  +
Sbjct: 21  ARVVSLVRRCPGLRALRGAHAHFLRLRLPRLTYAFALSKLLASCAAASATTVASSYARAL 80

Query: 90  FYQIENPNSFTWNTLIRACARSVDA----KPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           F QI  P +F +N+LIRA + S  +         +L++RM+  G+  P+  T  F LKAC
Sbjct: 81  FDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKAC 140

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSW 204
               A  +G+Q HA  F  GL    Y+   L++ YA C  + LA  VFD M+E ++LV+W
Sbjct: 141 T---ALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAW 197

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           + MI  + + G  + AL LFR MQ +   PD  T  S+ SACA    L LG W HA+I R
Sbjct: 198 SSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDR 257

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                +  D+ ++ +LIDMY KCG ++ A+ VF+SM +RD  +W+++I+G A+HG AE A
Sbjct: 258 K---GITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDA 314

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L  F R++ +    PN++TFVGVLSAC H G+V +GR Y+  M  E  I   +E+YGC+V
Sbjct: 315 LGLFSRML-QLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM-QELGIEASMENYGCMV 372

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL R+G +DEA   V+ MP+ P++VIWR+LL A  K    + + E  ++++ E E    
Sbjct: 373 DLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVAS-KSSNRIDIVELASRRLFELEPQNP 431

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
              YVLLS +YA   +W+ V  +RK M D  VT   GCSSIEI+G  H+F   D SHP+ 
Sbjct: 432 EN-YVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEI 490

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           K+I   L  I +++   G+ P ++ A + D +++ K+ +L  HSERLAIA G+L  K   
Sbjct: 491 KKIRLVLREIADRVLCAGHKP-WTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPH 549

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IRV KNLR C DCHEVTK+IS+ +  EIIVRDR RFH F  GSCSC D+W
Sbjct: 550 VIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 149/331 (45%), Gaps = 26/331 (7%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTLL-IYSRIIHFASFADLDYAF 87
           N  +L   L  C ++ + +Q+HAQA    L   P     LL +Y+R    A       A 
Sbjct: 129 NSFTLAFVLKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVA------LAR 182

Query: 88  RVF-YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
            VF   +E+ N   W+++I   +R +    +A+ LF+ M   G V PD+ T    + ACA
Sbjct: 183 NVFDGMVEDKNLVAWSSMIGGYSR-MGMVNEALGLFRDMQAVG-VNPDEVTMVSVISACA 240

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
              A   GK  HA I ++G+  D+ ++ +LI  YA CG ++ A  VFD+M+ER   +W+ 
Sbjct: 241 KAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSA 300

Query: 207 MIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA--GLATLSLGMWAHAYILR 263
           MI      G  + AL LF RM Q+   P+  TF  + SACA  GL       W       
Sbjct: 301 MIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM---- 356

Query: 264 HCDHSLVTDVLVNN--SLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRA 320
                L  +  + N   ++D+ C+ G LD A      MP   +   W ++++      R 
Sbjct: 357 ---QELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRI 413

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           +       RL   E  +P +   +  L A N
Sbjct: 414 DIVELASRRLFELEPQNPENYVLLSNLYALN 444


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/584 (40%), Positives = 345/584 (59%), Gaps = 19/584 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           S+L +  + +++   +++HA A+R    +Q   + + + I+  +     +D A +VF  +
Sbjct: 332 SVLPACADAQALGACREVHAFAVRGGFDEQ---VNVSTAILDVYCKCGAVDSARKVFDGM 388

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           ++ NS +WN +I+  A + DA  +A+ LF+RM+ +G  + D      AL AC  L    +
Sbjct: 389 QDRNSVSWNAMIKGYAENGDAT-EALALFKRMVGEGVDVTDVSVLA-ALHACGELGFLDE 446

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G++ H  + + GL S+V + N+LI  Y  C   DLA +VFD +  ++ VSWN MI    Q
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQ 506

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVT 271
            G  + A++LF RMQ+   +PD +T  SI  A A ++      W H Y +R H D     
Sbjct: 507 NGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQ---- 562

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V  +LIDMY KCG + IAR +F S   R + +WN++I G+  HG  + A++ F+ + 
Sbjct: 563 DVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMK 622

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 PN  TF+ VLSAC+H G+V EG++YF  M  +Y + P +EHYG +VDLL RAG 
Sbjct: 623 SSGKV-PNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGK 681

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY-VLL 450
           + EA   +  MPM+P   ++ ++L AC K H +V L+EE A+++ E E     GVY VLL
Sbjct: 682 LHEAWSFIQKMPMEPGISVYGAMLGAC-KLHKNVELAEESAQRIFELEPE--EGVYHVLL 738

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           + +YA+A  W DV  VR  M  KG+ K PG S +++    H F++G T+H Q K IY  L
Sbjct: 739 ANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARL 798

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             + E++K+ GY PD    ++ D  DD K   L  HSE+LAIA G++   PG  I++ KN
Sbjct: 799 AKLIEEIKAVGYVPDTD--SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKN 856

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVCKDCH  TKLIS +   EII+RD  RFHHFKDG CSC DYW
Sbjct: 857 LRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 10/267 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF ++   +   WN L+   AR+  A+  A+ +  RM E+    PD  T    L AC
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAE-AAVGMVVRMQEEDGERPDAVTLVSVLPAC 337

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A    ++ HA   + G    V ++ +++  Y  CG +D A KVFD M +R+ VSWN
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWN 397

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITS---ACAGLATLSLGMWAHAYIL 262
            MI  + + G+   AL LF+RM  + E    T  S+ +   AC  L  L  G   H  ++
Sbjct: 398 AMIKGYAENGDATEALALFKRM--VGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLV 455

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           R     L ++V V N+LI MYCKC   D+A QVF+ +  +   SWN++ILG   +G +E 
Sbjct: 456 R---IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSED 512

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSA 349
           A++ F R+ + E+  P+S T V ++ A
Sbjct: 513 AVRLFSRMQL-ENVKPDSFTLVSIIPA 538



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 152/325 (46%), Gaps = 15/325 (4%)

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           +RA A   D +  A+  F  M       P   TF   LK CA     + G+  HA +  R
Sbjct: 196 LRAAASRSDLR-GALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAAR 254

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           GL  +     +L + YA C     A +VFD M  R  V+WN ++  + + G  ++A+ + 
Sbjct: 255 GLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMV 314

Query: 225 RRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
            RMQ      PD  T  S+  ACA    L      HA+ +R         V V+ +++D+
Sbjct: 315 VRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVR---GGFDEQVNVSTAILDV 371

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           YCKCG++D AR+VF+ M  R+  SWN++I G+A +G A  AL  F R+ V E      ++
Sbjct: 372 YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRM-VGEGVDVTDVS 430

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMIN---EYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            +  L AC   G + EGR   ++++    E N+  +      L+ +  +    D A  + 
Sbjct: 431 VLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM----NALITMYCKCKRTDLAAQVF 486

Query: 400 SNMPMKPDAVIWRSLLDACCKKHAS 424
             +  K   V W +++  C +  +S
Sbjct: 487 DELGYKTR-VSWNAMILGCTQNGSS 510


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 341/594 (57%), Gaps = 44/594 (7%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           A+ +   +PQ++  +   S I+       +  A+++F +++  +  +W+ LI    ++  
Sbjct: 226 AKLIFDQMPQRN-IVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQN-G 283

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
              +A+V+F  M   G  L D+      L ACA+L     GK  H  + + G+ S V + 
Sbjct: 284 MYEEALVMFIEMNANGMRL-DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQ 342

Query: 174 NSLIHFYAS-------------------------------CGHLDLANKVFDNMLERSLV 202
           N+LIH Y+                                CG ++ A  +FD M E+ +V
Sbjct: 343 NALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIV 402

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW+ +I  + Q   F   L LF  MQ+    PD     S+ SAC  LA L  G W HAYI
Sbjct: 403 SWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYI 462

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            ++    L  +V++  +L+DMY KCG ++ A +VF  M ++ ++SWN++I+G A++G  E
Sbjct: 463 RKN---GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVE 519

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            +L  F  +       PN ITF+GVL AC H G+V EGR +F  MI ++ I P ++HYGC
Sbjct: 520 RSLDMFSEMK-NNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGC 578

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDLL RAG ++EA  L+ +MPM PD   W +LL AC KKH    + E V +++IE +  
Sbjct: 579 MVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGAC-KKHGDTEMGERVGRKLIELQPD 637

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
              G +VLLS ++AS   W DV  VR +M  +GV K PGCS IE +G+ HEF AGD +HP
Sbjct: 638 -HDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHP 696

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLK 560
              ++ G L+ + ++LK  GY PD ++ ++ +DE  + K+++L  HSE+LAIA G+L + 
Sbjct: 697 WINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDE--EEKETTLFRHSEKLAIAFGLLTIS 754

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P  PIR+ KNLR+C DCH   KLIS+ +  EI+VRDR RFH+FK+G+CSCMDYW
Sbjct: 755 PPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 191/394 (48%), Gaps = 60/394 (15%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVF 90
           S L + L  C ++ Q  +I +Q + T            SR++ F++   F  LDY+ ++F
Sbjct: 42  SILETHLHNCHNLKQFNRILSQMILTGFISD---TFAASRLLKFSTDSPFIGLDYSLQIF 98

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +IEN N F WNT++RA  +S  A+ +A++L++ M+ + NV PD +T+P  ++ACA    
Sbjct: 99  DRIENSNGFMWNTMMRAYIQSNSAE-KALLLYKLMV-KNNVGPDNYTYPLVVQACAVRLL 156

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GK+ H H+ K G  SDVY+ N+LI+ YA CG++  A K+FD       VSWN ++  
Sbjct: 157 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 216

Query: 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           +V+ G+ + A  +F +M     P                                     
Sbjct: 217 YVKKGDVEEAKLIFDQM-----PQ------------------------------------ 235

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +++ +NS+I +  K G +  A ++F  M ++D+ SW+++I G+  +G  E AL  F  +
Sbjct: 236 RNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 295

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLL 386
                   + +  V VLSAC H  +V  G+     MI+   I   +E Y      L+ + 
Sbjct: 296 NA-NGMRLDEVVVVSVLSACAHLSIVKTGK-----MIHGLVIRMGIESYVNLQNALIHMY 349

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           + +G I +A  L  N     D + W S++  C K
Sbjct: 350 SGSGEIMDAQKLF-NGSHNLDQISWNSMISGCMK 382



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 129/269 (47%), Gaps = 23/269 (8%)

Query: 165 GLVSDVYINNSLIHFYASCGH--LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           G +SD +  + L+ F        LD + ++FD +   +   WN M+ A++Q    + AL 
Sbjct: 68  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 127

Query: 223 LFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           L++ M +    PD YT+  +  ACA       G   H ++L+       +DV V N+LI+
Sbjct: 128 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKV---GFDSDVYVQNTLIN 184

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS- 340
           MY  CG++  AR++F+  P  D  SWNSI+ G+   G  E A   FD++      + NS 
Sbjct: 185 MYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSM 244

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           I  +G +      G V E    F+ M +E ++      +  L+    + G  +EAL +  
Sbjct: 245 IVLLGKM------GQVMEAWKLFNEM-DEKDMVS----WSALISGYEQNGMYEEALVMFI 293

Query: 401 NM---PMKPDAVIWRSLLDACCKKHASVV 426
            M    M+ D V+  S+L AC   H S+V
Sbjct: 294 EMNANGMRLDEVVVVSVLSACA--HLSIV 320


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/572 (40%), Positives = 351/572 (61%), Gaps = 18/572 (3%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +   +   +++  ++        H+ ++ Y+ +I  +AS   ++ A ++F 
Sbjct: 113 HTSLISMYAQNGRLEDAQKVFDRS-------SHRDVVSYTALITGYASRGYIESAQKMFD 165

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I   A + + K +A+ LF+ M++  NV PD+ T    + ACA   + 
Sbjct: 166 EIPIKDVVSWNAMISGYAETGNYK-KALELFKEMMKT-NVKPDESTMATVVSACAQSGSI 223

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI  Y+ CG ++ A ++ + +  + ++SWN +I  +
Sbjct: 224 ELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGY 283

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     +V
Sbjct: 284 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVV 343

Query: 271 TDVL-VNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFD 328
           T+   +  SLIDMY KCG +D A QV +S    R L++WN++I GFA+HGRA AA   F 
Sbjct: 344 TNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFS 403

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R+  +    P+ ITFVG+LSAC+H GM+  GR+ F  M  +YNITP LEHYGC++DLL  
Sbjct: 404 RMR-KNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGH 462

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           +G   EA  +++ MPM+PD VIW SLL A CK H ++ L E  AK++I+ E     G YV
Sbjct: 463 SGLFKEAEEMINTMPMEPDGVIWCSLLKA-CKIHGNLELGESFAKKLIKIEPE-NPGSYV 520

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKE-PGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           LLS +YA+A +WN+V  +R L+ DKG+ K+ PGCSSIEID + HEF  GD  HPQ ++IY
Sbjct: 521 LLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 580

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
           G L+ ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + +
Sbjct: 581 GMLEEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 639

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
            KNLRVC++CHE TKLIS+I+  EII RDR R
Sbjct: 640 VKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 179/371 (48%), Gaps = 41/371 (11%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F  L YA  VF  I  PN   WN + R  A S D    A+ L+  MI  G +LP+  TFP
Sbjct: 22  FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPV-SALKLYVVMISLG-LLPNFFTFP 79

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           F LK+CA    F +G+Q H H+ K G   D+Y++ SLI  YA  G L+ A KVFD    R
Sbjct: 80  FLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR 139

Query: 200 -------------------------------SLVSWNVMIDAFVQFGEFDSALKLFRR-M 227
                                           +VSWN MI  + + G +  AL+LF+  M
Sbjct: 140 DVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +   +PD  T  ++ SACA   ++ LG   H++I    DH   +++ + N+LID+Y KCG
Sbjct: 200 KTNVKPDESTMATVVSACAQSGSIELGRQVHSWI---NDHGFGSNLKIVNALIDLYSKCG 256

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ A ++ E +  +D+ SWN++I G+      + AL  F  + +    +PN +T + +L
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSIL 315

Query: 348 SACNHRGMVSEGR---DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            AC H G +  GR    Y D  +    +T        L+D+ A+ G+ID A  +  +   
Sbjct: 316 PACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAF 375

Query: 405 KPDAVIWRSLL 415
                 W +++
Sbjct: 376 NRSLSTWNAMI 386


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/603 (40%), Positives = 351/603 (58%), Gaps = 30/603 (4%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           NH +L +   +C + + LKQIH Q + T L  Q   L   S +I  +S  +L YAF++F 
Sbjct: 148 NHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCL---SHLIKISSKFNLPYAFKIFN 204

Query: 92  QIENPNSFTWNTLIRACARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            I NP  F +NTLI +     +      A  L+ +++   N+ P+  TFP   KAC    
Sbjct: 205 YISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQ 264

Query: 150 A-FSQGKQAHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           + F  G   H H+ K      D ++  SL++FYA  G + ++  +FD + E  L +WNV+
Sbjct: 265 SWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVI 324

Query: 208 IDAFVQFGE-------FDSA------LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253
           ++A+ +          FD A      L LFR MQ++   P+  T  ++ SAC+ L  +S 
Sbjct: 325 LNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQ 384

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS--WNSII 311
           G W H ++LR+    +  +  V  + +DMY KCG L++A QVF+ MP+ D  S  + ++I
Sbjct: 385 GFWVHCFVLRN---KIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMI 441

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GFA+HG    AL+ + ++  +    P+S TFV  + AC+H G+V EG + F  M   + 
Sbjct: 442 GGFAVHGYGNQALELYRKMKFK-GLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHG 500

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           + P LEHYGCL+DLL RAG + EA   +++MPMKP+AV+WRSLL A  + H ++ + E  
Sbjct: 501 VEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAA-RIHGNLGVGEVA 559

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
             ++IE E    SG YVLLS +YAS  R NDV  VRKLM   GV K PG S +EI G  H
Sbjct: 560 LTKLIELEPET-SGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMH 618

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
           EF  GD SHP +K+IY  +  I+ +L+  G+    S+A + D  ++ K+  L  HSERLA
Sbjct: 619 EFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEA-LFDLEEEDKEGVLSYHSERLA 677

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA  ++     + IR+ KNLRVC DCH  TKLIS  ++ EIIVRDR RFHHFKDGSCSC+
Sbjct: 678 IAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCL 737

Query: 612 DYW 614
           DYW
Sbjct: 738 DYW 740


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 343/614 (55%), Gaps = 43/614 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+S L +C   SQ+KQ+HA  +R  L Q    L    R++         Y   VF Q+  
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN F W  +IR  A       ++   + RM   G V P   TF    KAC        GK
Sbjct: 105 PNPFLWTAMIRGYALQ-GLLSESTNFYTRMRRDG-VGPVSFTFSALFKACGAALNMDLGK 162

Query: 156 QAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           Q HA  I   G  SD+Y+ NS+I  Y  CG L  A KVFD M ER +VSW  +I A+ ++
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 215 GEFDSA-------------------------------LKLFRRMQ-ILFEPDGYTFQSIT 242
           G+ +SA                               L+ F++MQ +  E D  T   + 
Sbjct: 223 GDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           SACA L  +    W    I          +V+V ++LIDMY KCGS D A +VFE M +R
Sbjct: 283 SACAQLGAVKHANWIRD-IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           ++ S++S+ILG+A+HGRA +AL+ F  ++  E   PN +TF+G+LSAC+H G+V +GR  
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTE-IRPNKVTFIGILSACSHAGLVEQGRQL 400

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M   + + P  +HY C+VDLL RAG ++EAL LV  MPM+P+  +W +LL A C+ H
Sbjct: 401 FAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA-CRIH 459

Query: 423 ASVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
            +  +++  A ++ + E  GI  G Y+LLS +YASA RW +V  +RK++ +KG  K PGC
Sbjct: 460 GNPDIAQIAANELFKLEPNGI--GNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517

Query: 482 SSIE-IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
           S  E  +G  H+FFAGDT+HP++ +I   L  + E+L+S GY P+   A   D  DD K+
Sbjct: 518 SWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAP-YDLTDDEKE 576

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
             L  HSE+LA+A G+L  + G  I++ KN+R+C+DCH V    S I   EIIVRD  RF
Sbjct: 577 RILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRF 636

Query: 601 HHFKDGSCSCMDYW 614
           HHF +G+CSC ++W
Sbjct: 637 HHFHNGTCSCGNFW 650


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 350/580 (60%), Gaps = 15/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLL--IYSRIIHFASFADLDYAFRVFYQIENPN 97
           L  C ++ + KQ+HA+ ++ +L          + ++  H      ++YA  +F  I++P 
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           +F +NT+IR    +V +  +A+  +  M+++GN  PD  T+P  LKAC  L +  +GKQ 
Sbjct: 97  TFDFNTMIRGYV-NVMSFEEALCFYNEMMQRGNE-PDNFTYPCLLKACTRLKSIREGKQI 154

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  +FK GL +DV++ NSLI+ Y  CG ++L++ VF+ +  ++  SW+ M+ A    G +
Sbjct: 155 HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMW 214

Query: 218 DSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              L LFR M  +   + +     S   ACA    L+LGM  H ++LR+       +++V
Sbjct: 215 SECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISE---LNIIV 271

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             SL+DMY KCG LD A  +F+ M KR+  +++++I G ALHG  E+AL+ F +++ +E 
Sbjct: 272 QTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI-KEG 330

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ + +V VL+AC+H G+V EGR  F  M+ E  + P  EHYGCLVDLL RAG ++EA
Sbjct: 331 LEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEA 390

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           L  + ++P++ + VIWR+ L  C +   ++ L +  A+++++       G Y+L+S +Y+
Sbjct: 391 LETIQSIPIEKNDVIWRTFLSQC-RVRQNIELGQIAAQELLKLSSHN-PGDYLLISNLYS 448

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
             + W+DV   R  +  KG+ + PG S +E+ G  H F + D SHP+ K+IY  L  ++ 
Sbjct: 449 QGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEW 508

Query: 516 KLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           +LK  GY+PD +Q  + VDE  + K+  L+ HS+++AIA G+L   PG  I++ +NLR+C
Sbjct: 509 QLKFEGYSPDLTQILLNVDE--EEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMC 566

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH  TK IS I+  EI+VRDR RFH FK G+CSC DYW
Sbjct: 567 SDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY 85
           NE     +  LL + T  KS+ + KQIH Q  +  L  +    +  S I  +    +++ 
Sbjct: 128 NEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGL--EADVFVQNSLINMYGRCGEMEL 185

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           +  VF ++E+  + +W++++ A A  +    + ++LF+ M  + N+  ++     AL AC
Sbjct: 186 SSAVFEKLESKTAASWSSMVSARA-GMGMWSECLLLFRGMCSETNLKAEESGMVSALLAC 244

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A + G   H  + +     ++ +  SL+  Y  CG LD A  +F  M +R+ ++++
Sbjct: 245 ANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYS 304

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI      GE +SAL++F +M +   EPD   + S+ +AC+    +  G    A +L+ 
Sbjct: 305 AMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLK- 363

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
            +  +         L+D+  + G L+ A +  +S+P +++   W + +
Sbjct: 364 -EGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFL 410


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 343/614 (55%), Gaps = 43/614 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+S L +C   SQ+KQ+HA  +R  L Q    L    R++         Y   VF Q+  
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN F W  +IR  A       ++   + RM   G V P   TF    KAC        GK
Sbjct: 105 PNPFLWTAMIRGYALQ-GLLSESTNFYTRMRRDG-VGPVSFTFSALFKACGAALNMDLGK 162

Query: 156 QAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           Q HA  I   G  SD+Y+ NS+I  Y  CG L  A KVFD M ER +VSW  +I A+ ++
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 215 GEFDSA-------------------------------LKLFRRMQ-ILFEPDGYTFQSIT 242
           G+ +SA                               L+ F++MQ +  E D  T   + 
Sbjct: 223 GDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           SACA L  +    W    I          +V+V ++LIDMY KCGS D A +VFE M +R
Sbjct: 283 SACAQLGAVKHANWIRD-IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           ++ S++S+ILG+A+HGRA +AL+ F  ++  E   PN +TF+G+LSAC+H G+V +GR  
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTE-IRPNKVTFIGILSACSHAGLVEQGRQL 400

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M   + + P  +HY C+VDLL RAG ++EAL LV  MPM+P+  +W +LL A C+ H
Sbjct: 401 FAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA-CRIH 459

Query: 423 ASVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
            +  +++  A ++ + E  GI  G Y+LLS +YASA RW +V  +RK++ +KG  K PGC
Sbjct: 460 GNPDIAQIAANELFKLEPNGI--GNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517

Query: 482 SSIE-IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
           S  E  +G  H+FFAGDT+HP++ +I   L  + E+L+S GY P+   A   D  DD K+
Sbjct: 518 SWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAP-YDLTDDEKE 576

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
             L  HSE+LA+A G+L  + G  I++ KN+R+C+DCH V    S I   EIIVRD  RF
Sbjct: 577 RILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRF 636

Query: 601 HHFKDGSCSCMDYW 614
           HHF +G+CSC ++W
Sbjct: 637 HHFHNGTCSCGNFW 650


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 363/638 (56%), Gaps = 50/638 (7%)

Query: 11  PTPQTHSHSIFNNNRNEGSFN--NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
           P+P+ H     N+N N  S    +   ++S L   K ++Q+  IHAQ +R    Q     
Sbjct: 29  PSPKPHP----NSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQD--PF 82

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           +++  +   +    +DYA R+F    NPN + +  LI     S +    AI L+ RM+  
Sbjct: 83  MVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYF-DAIQLYSRMLHD 141

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            ++LPD +     LKAC    A  +G++ H+   K GL S+  +   ++  Y  CG L  
Sbjct: 142 -SILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 200

Query: 189 ANKVFDNMLE------------------------------RSLVSWNVMIDAFVQFGEFD 218
           A +VF+ M E                              +  V W  MID FV+  E +
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMN 260

Query: 219 SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            AL+ FR MQ     P+ +T   + SAC+ L  L +G W H+Y+ +     +  ++ V N
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF---EIELNLFVGN 317

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +LI+MY +CGS+D A+ VF+ M  RD+ ++N++I G +++G++  A++ F R+++     
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF-RVMIGRRLR 376

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P ++TFVGVL+AC+H G+V  G   F  M  +Y + P +EHYGC+VDLL R G ++EA  
Sbjct: 377 PTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYD 436

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           L+  M M PD ++  +LL AC K H ++ L E+VAK V+E  G   SG YVLLS VYAS+
Sbjct: 437 LIRTMKMTPDHIMLGTLLSAC-KMHKNLELGEQVAK-VLEDRGQADSGTYVLLSHVYASS 494

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            +W +   VR  M + G+ KEPGCSSIE++   HEF  GD  HP+ ++IY  L+ ++  L
Sbjct: 495 GKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLL 554

Query: 518 KSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +  GY P+  +  ++ +++DG K+ +L +HSERLAI  G+++ +P   IRV KNLRVC D
Sbjct: 555 RLEGYHPE--KEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYD 612

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH   KLI++I   +++VRDR RFH+F++G+CSC DYW
Sbjct: 613 CHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/583 (39%), Positives = 342/583 (58%), Gaps = 16/583 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL++ T  + +   +++H +  +  L  + +  +  S +  +A   D+  A  +F ++ 
Sbjct: 202 SLLNAFTNPELLQVGQKVHMEIAKAGLELEPR--VGTSLVGMYAKCGDISKAQVIFDKLP 259

Query: 95  NPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
             N  TW  LI   A+   VD    A+ L ++M +Q  V P+K T+   L+ C    A  
Sbjct: 260 EKNVVTWTLLIAGYAQQGQVDV---ALELLEKM-QQAEVAPNKITYTSILQGCTTPLALE 315

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GK+ H +I + G   ++++ N+LI  Y  CG L  A K+F ++  R +V+W  M+  + 
Sbjct: 316 HGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYA 375

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q G  D A+ LFRRMQ    +PD  TF S  ++C+  A L  G   H  ++ H  +SL  
Sbjct: 376 QLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV-HAGYSL-- 432

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV + ++L+ MY KCGS+D AR VF  M +R++ +W ++I G A HGR   AL+YF+++ 
Sbjct: 433 DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMK 492

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            ++   P+ +TF  VLSAC H G+V EGR +F  M  +Y I P++EHY C VDLL RAG+
Sbjct: 493 -KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGH 551

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++EA +++  MP +P   +W +LL AC + H+ V   E  A+ V++ +     G YV LS
Sbjct: 552 LEEAENVILTMPFQPGPSVWGALLSAC-RIHSDVERGERAAENVLKLDPDD-DGAYVALS 609

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YA+A R+ D   VR++M  + V KEPG S IE+DG  H F   D SHP+ K+IY  L 
Sbjct: 610 NIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELG 669

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + E++K +GY PD ++  + D  ++ K  +L  HSERLAI  G++   PG PIR+ KNL
Sbjct: 670 KLTEQIKEQGYVPD-TRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNL 728

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH  +K IS++   EII RD  RFHHF DG CSC D+W
Sbjct: 729 RVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 193/388 (49%), Gaps = 13/388 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
            LL      +S+ Q +++HA  L++ +  Q    L  + +  +A    L  A RVF  I 
Sbjct: 101 GLLQECARLRSLEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + N  +W  +I A     +   +A   ++ M   G   PDK TF   L A         G
Sbjct: 159 DRNIVSWTAMIEAFVAG-NQNLEAYKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQVG 216

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           ++ H  I K GL  +  +  SL+  YA CG +  A  +FD + E+++V+W ++I  + Q 
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G+ D AL+L  +M Q    P+  T+ SI   C     L  G   H YI++        ++
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQ---SGYGREI 333

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N+LI MYCKCG L  AR++F  +P RD+ +W +++ G+A  G  + A+  F R+  +
Sbjct: 334 WVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRM-QQ 392

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNI 392
           +   P+ +TF   L++C+    + EG+     +++  Y++   L+    LV + A+ G++
Sbjct: 393 QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSM 450

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCK 420
           D+A  LV N   + + V W +++  C +
Sbjct: 451 DDA-RLVFNQMSERNVVAWTAMITGCAQ 477



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 155/301 (51%), Gaps = 10/301 (3%)

Query: 117 QAIVLFQRMIEQGN-VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           +A+ +   MI QG  V  D   F   L+ CA L +  QG++ HA I K G+  + Y+ N+
Sbjct: 79  EALGILNTMILQGTRVYSD--VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 136

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
           L+  YA CG L  A +VFD + +R++VSW  MI+AFV   +   A K +  M++   +PD
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
             TF S+ +A      L +G   H  I +     L  +  V  SL+ MY KCG +  A+ 
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAK---AGLELEPRVGTSLVGMYAKCGDISKAQV 253

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F+ +P++++ +W  +I G+A  G+ + AL+  +++   E  +PN IT+  +L  C    
Sbjct: 254 IFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE-VAPNKITYTSILQGCTTPL 312

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
            +  G+     +I +      +     L+ +  + G + EA  L  ++P + D V W ++
Sbjct: 313 ALEHGKKVHRYII-QSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAM 370

Query: 415 L 415
           +
Sbjct: 371 V 371


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/597 (38%), Positives = 350/597 (58%), Gaps = 22/597 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           ++EG   +  +L++ L     +  L   K IH  A+R    +        + +  ++   
Sbjct: 240 QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM--YSKCG 297

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            ++ A  +F  ++     +WN+++    ++ + + +AI +F++M+E+G + P   T   A
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE-KAIAVFEKMLEEG-IDPTGVTIMEA 355

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L ACA L    +GK  H  + +  L SD+ + NSLI  Y+ C  +D+A+ +F+N+  R+ 
Sbjct: 356 LHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH 415

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VSWN MI  + Q G    AL  F  M+ L  +PD +T  S+  A A L+      W H  
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGL 475

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           I+R C   L  ++ V  +L+DMY KCG++ +AR++F+ +  R + +WN++I G+  HG  
Sbjct: 476 IIRSC---LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
            AAL  FD++  + +  PN IT++ V+SAC+H G+V EG  +F  M  +Y + P ++HYG
Sbjct: 533 RAALDLFDKMK-KGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE--- 437
            +VDLL RAG I EA   + NMP+ P   ++ ++L AC K H ++ + E+ AK++ E   
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGAC-KIHKNIEVGEKAAKKLFELNP 650

Query: 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD 497
            EGG     +VLL+ +YAS  +W+ V  VRK M  KG+ K PGCS +E+    H F++G 
Sbjct: 651 DEGG----YHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGS 706

Query: 498 TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL 557
           T+HPQ+K+IY FL+ +  ++K+ GY PD +   ++D  DD ++  L  HSE+LAIA G+L
Sbjct: 707 TTHPQSKRIYAFLEELVYEIKAAGYVPDTN--LILDVEDDVQEQLLNSHSEKLAIAFGLL 764

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           N  PG  I V KNLRVC DCH  TK IS +   EIIVRD  RFHHFK+G CSC DYW
Sbjct: 765 NTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 192/378 (50%), Gaps = 13/378 (3%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNS 98
           L  C SM +L QI    ++  L  +H   L  ++++  F+ +  ++ A RVF  I++   
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEH---LFQTKLVSLFSKYGSINEAARVFEPIDDKLD 112

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
             ++T+++  A++  +   A+    RM    +V P  + F + LK C       +GK+ H
Sbjct: 113 ALYHTMLKGYAKN-SSLETALAFLCRM-RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
             +      ++V+    +++ YA C  +D A K+FD M ER LVSWN +I  F Q G   
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAK 230

Query: 219 SALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            AL+L  RMQ   + PD  T  ++  A A +  L +G   H Y +R     LV    ++ 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN---IST 287

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L DMY KCGS++ AR +F+ M ++ + SWNS++ G+  +G  E A+  F+++ +EE   
Sbjct: 288 ALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKM-LEEGID 346

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P  +T +  L AC   G +  G+ +    +++ N+   +     L+ + ++   +D A  
Sbjct: 347 PTGVTIMEALHACADLGDLERGK-FVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 398 LVSNMPMKPDAVIWRSLL 415
           + +N+  +   V W +++
Sbjct: 406 IFNNLNGRTH-VSWNAMI 422


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/603 (38%), Positives = 353/603 (58%), Gaps = 23/603 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQ----QHKTLLIYS 72
           ++N  + EG   N  + +  L  C + + L   K+IH++  +         Q+  + +YS
Sbjct: 315 VYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYS 374

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           R     S  D   A  VF ++   +  +W  +I   A+S     +A+ ++Q M +Q  V 
Sbjct: 375 RC---GSIKD---ARLVFDKMVRKDVISWTAMIGGLAKS-GFGAEALTVYQEM-QQAGVE 426

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P++ T+   L AC+   A   G++ H  + + GL +D ++ N+L++ Y+ CG +  A +V
Sbjct: 427 PNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQV 486

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           FD M++R +V++N MI  +        ALKLF R+Q    +PD  T+ ++ +ACA   +L
Sbjct: 487 FDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 546

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                 H  + +       +D  V N+L+  Y KCGS   A  VFE M KR++ SWN+II
Sbjct: 547 EWAREIHTLVRKG---GFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAII 603

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G A HGR + AL+ F+R+ +E    P+ +TFV +LSAC+H G++ EGR YF  M  ++ 
Sbjct: 604 GGSAQHGRGQDALQLFERMKME-GVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFA 662

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P +EHYGC+VDLL RAG +DEA  L+  MP + +  IW +LL AC + H +V ++E  
Sbjct: 663 IIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGAC-RIHGNVPVAERA 721

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+  ++ +    + VYV LS +YA+A  W+    +RKLM  +GVTKEPG S I++    H
Sbjct: 722 AESSLKLDLD-NAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLH 780

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F A D SHPQ+++IY  LD +   +K +GY PD +++ M D  +  K++++  HSERLA
Sbjct: 781 YFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPD-TRSVMHDVDEGEKENAVCHHSERLA 839

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA G+++  PG  I +FKNLRVC DCH  TK IS+I + EII RD  RFHHFKDG CSC 
Sbjct: 840 IAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCG 899

Query: 612 DYW 614
           DYW
Sbjct: 900 DYW 902



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 198/401 (49%), Gaps = 14/401 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALR-TALPQQHKTLLIYSRIIHFASF 80
           + +G+  N S  +  L  C  +  L   +Q+H   ++   +P Q+    + +  I   S 
Sbjct: 15  QQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSI 74

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            +    ++    +E     +WN ++    +      +A+ L ++M + G + PD+ T   
Sbjct: 75  EEARQVWKKLSYMER-TVHSWNAMVVGYIQ-YGYIEKALKLLRQMQQHG-LAPDRTTIMS 131

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L +C    A   G++ H    + GL+ DV + N +++ YA CG ++ A +VFD M ++S
Sbjct: 132 FLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKS 191

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +VSW + I  +   G  ++A ++F++M Q    P+  T+ S+ +A +  A L  G   H+
Sbjct: 192 VVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHS 251

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
            IL     S   D  V  +L+ MY KCGS    RQVFE +  RDL +WN++I G A  G 
Sbjct: 252 RILNAGHES---DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGY 308

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            E A + ++++   E   PN IT+V +L+AC +   +  G++     + +   T  +   
Sbjct: 309 WEEASEVYNQM-QREGVMPNKITYVILLNACVNSAALHWGKEIHS-RVAKAGFTSDIGVQ 366

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             L+ + +R G+I +A  LV +  ++ D + W +++    K
Sbjct: 367 NALISMYSRCGSIKDA-RLVFDKMVRKDVISWTAMIGGLAK 406


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 338/620 (54%), Gaps = 58/620 (9%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S L  C ++ ++KQIHAQ +   +   P  H   +     I   +  +LDYA ++    
Sbjct: 13  ISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVA---TIALHNTTNLDYANKLLNHN 69

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI---EQGNVLPDKHTFPFALKACAYLFA 150
            NP  FT N++IRA ++S  + P     F   I      N+ PD +TF F ++ CA L A
Sbjct: 70  NNPTLFTLNSMIRAYSKS--STPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQA 127

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS---------------------------- 182
              G   H  + K G   D ++   L+  YA                             
Sbjct: 128 HVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNA 187

Query: 183 ---CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQ 239
              CG +D A K+FD M ER  V+WN MI  + Q G    AL +F  MQ+    +G    
Sbjct: 188 CAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM----EGVKLN 243

Query: 240 SIT-----SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            ++     SAC  L  L  G W HAY+ R   + +   V +  +L+DMY KCG++D A Q
Sbjct: 244 EVSMVLVLSACTHLQVLDHGRWVHAYVER---YKVRMTVTLGTALVDMYAKCGNVDRAMQ 300

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VF  M +R++ +W+S I G A++G  E +L  F+ +   E   PN ITF+ VL  C+  G
Sbjct: 301 VFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDM-KREGVQPNGITFISVLKGCSVVG 359

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V EGR +FD M N Y I P LEHYG +VD+  RAG + EAL+ +++MPM+P    W +L
Sbjct: 360 LVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSAL 419

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L A C+ + +  L E   ++++E E     G YVLLS +YA  + W  V  +R+ M  KG
Sbjct: 420 LHA-CRMYKNKELGEIAQRKIVELEDK-NDGAYVLLSNIYADYKNWESVSSLRQTMKAKG 477

Query: 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
           V K PGCS IE+DG  HEF  GD SHP+  +I   L+ I + L+  GY  + +   + D 
Sbjct: 478 VKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVAN-TNPVLFDI 536

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
            ++ K+ +L  HSE++AIA G+++LK  +PIRV  NLR+C DCH V K+IS+IFN EIIV
Sbjct: 537 EEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIV 596

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RDR RFHHFKDG CSC DYW
Sbjct: 597 RDRNRFHHFKDGECSCKDYW 616


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 344/603 (57%), Gaps = 41/603 (6%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           +  +++QIHA+       +    +  + + +  +    LDYA ++  + E P  F  N++
Sbjct: 18  TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           IRA  +S     ++   ++R++  GN L PD +T  F ++AC  L     G Q H    +
Sbjct: 78  IRAHCKS-PVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIR 136

Query: 164 RGLVSDVYINNSLIHFYASCGHLD-------------------------------LANKV 192
           RG  +D ++   LI  YA  G LD                                A K+
Sbjct: 137 RGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKL 196

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           F+ M ER  ++WN MI  + Q GE   AL +F  MQ+   + +G    S+ SAC  L  L
Sbjct: 197 FEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGAL 256

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             G WAH+YI R+    +   V +  +L+D+Y KCG ++ A +VF  M ++++ +W+S +
Sbjct: 257 DQGRWAHSYIERN---KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSAL 313

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G A++G  E  L+ F  L+ ++  +PN++TFV VL  C+  G V EG+ +FD M NE+ 
Sbjct: 314 NGLAMNGFGEKCLELFS-LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFG 372

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P LEHYGCLVDL ARAG +++A+ ++  MPMKP A +W SLL A  + + ++ L    
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHAS-RMYKNLELGVLA 431

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           +K+++E E     G YVLLS +YA +  W++V  VR+ M  KGV K+PGCS +E++G  H
Sbjct: 432 SKKMLELETA-NHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 490

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
           EFF GD SHP+  QI      I  +L+  GY  D +   M D  ++ K+ +L LHSE+ A
Sbjct: 491 EFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKAD-TTPVMFDIDEEEKEDALCLHSEKAA 549

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA GI++LK  +PIR+ KNLRVC DCH+V+ +IS+IFN EIIVRDR RFHHFKDG CSC 
Sbjct: 550 IAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCN 609

Query: 612 DYW 614
            +W
Sbjct: 610 GFW 612


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 11/581 (1%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +L +L     M + KQ+HA  L+  +      +           +  +DYA  +F QI+ 
Sbjct: 1   MLFTLLHNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDE 60

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+SF +NT+IR     +  + +A++L+  MIE+G V PDK T+PF LKAC+ L    +G 
Sbjct: 61  PSSFDYNTMIRGNVNDMKLE-EALLLYVDMIERG-VEPDKFTYPFVLKACSLLGVVDEGI 118

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H H+FK GL  DV + NSLI+ Y  CG +  A  VF+ M E+S+ SW+ +I A     
Sbjct: 119 QVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVE 178

Query: 216 EFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
            ++  L L  +M  +     +  T  ++ SAC  L +  LG   H  +LR+       +V
Sbjct: 179 MWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISE---LNV 235

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           +V  SLIDMY K G L+   +VF++M +++  S+  +I G A+HGR + ALK F  ++ E
Sbjct: 236 VVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMI-E 294

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           E  +P+ + +VGV SAC+H G+V EG   F  M  E+ I P ++HYGC+VDLL R G + 
Sbjct: 295 EGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLK 354

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA  L+ +M +KP+ VIWRSLL AC K H ++ + +  A+ +        SG Y++L+ +
Sbjct: 355 EAYELIKSMSIKPNDVIWRSLLSAC-KVHHNLEIGKIAAENLFMLNQN-NSGDYLVLANM 412

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA A++W+DV  +R  + ++ + + PG S IE     ++F + D S PQ   IY  +  +
Sbjct: 413 YAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQM 472

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
           + +LK  GY PD SQ  ++D  D+ K+  L+ HS++LAIA G+++   G P+R+ +NLR+
Sbjct: 473 EWQLKFEGYIPDTSQV-LLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRM 531

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH  TK IS I+  EI VRDR RFHHFK+GSCSC DYW
Sbjct: 532 CSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 334/559 (59%), Gaps = 49/559 (8%)

Query: 97  NSFTWNTLIRACARSVDAKPQ---AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            SF WN +IRA   +V + PQ    I ++ RM     V PD HTFPF L +         
Sbjct: 22  ESFVWNIIIRAIVHNV-SPPQRHSPISVYFRM-RHHCVSPDFHTFPFLLPSFHNPIHLPL 79

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL-------------DL------------ 188
           G++ HA I   GL  D ++  SL++ Y+SCG L             DL            
Sbjct: 80  GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAK 139

Query: 189 ------ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ------ILFEPDGY 236
                 A K+FD M ER+++SW+ +I+ +V  G++  AL LFR MQ      +   P+ +
Sbjct: 140 AGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKF 199

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T  ++ SAC  L  L  G W H+YI ++    +  D+++  +LIDMY KCGSL+ A++VF
Sbjct: 200 TMSTVLSACGRLGALEQGKWVHSYIDKY---GVEIDIVLGTALIDMYAKCGSLERAKRVF 256

Query: 297 ESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           +++  K+D+ +++++I   A++G  +   + F  +    + +PNS+TFVG+L AC HRG+
Sbjct: 257 DALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGL 316

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +++G+ YF +M  E+ ITP ++HYGC+VDL  R+G I EA   +++MPM+PD +IW SLL
Sbjct: 317 INKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLL 376

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
               +    +   E   K++IE +  + SG YVLLS VYA   RW +V  +R  M  KG+
Sbjct: 377 SG-SRMLGDIKTCEGALKRLIELD-PMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGI 434

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            K PGCS +E++G+ HEF  GD S  ++++IY  L+ I ++L+  GY  D ++  ++D  
Sbjct: 435 KKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSD-TKEVLLDLE 493

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           +  K+ +L  HSE+LAIA  ++  +PG P+R+ KNLR+C DCH V K+IS++F+ EI+VR
Sbjct: 494 EKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVR 553

Query: 596 DRARFHHFKDGSCSCMDYW 614
           D  RFHHF DGSCSC D+W
Sbjct: 554 DCNRFHHFSDGSCSCRDFW 572



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 47/370 (12%)

Query: 4   AIVQGGPPTPQTHSH-SIFNNNRN---EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRT 59
           AIV    P PQ HS  S++   R+      F+    LL S      +   ++ HAQ L  
Sbjct: 32  AIVHNVSP-PQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLF 90

Query: 60  ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS-------- 111
            L +     +  S +  ++S  DL  A R+F +  + +   WN+++ A A++        
Sbjct: 91  GLDKD--PFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARK 148

Query: 112 -VDAKP---------------------QAIVLFQRM-IEQGN---VLPDKHTFPFALKAC 145
             D  P                     +A+ LF+ M + + N   V P+K T    L AC
Sbjct: 149 LFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSAC 208

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSW 204
             L A  QGK  H++I K G+  D+ +  +LI  YA CG L+ A +VFD +  ++ + ++
Sbjct: 209 GRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAY 268

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           + MI     +G  D   ++F  M       P+  TF  I  AC     ++ G     + +
Sbjct: 269 SAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKG--KSYFKM 326

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
              +  +   +     ++D+Y + G +  A     SMP + D+  W S++ G  + G  +
Sbjct: 327 MTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIK 386

Query: 322 AALKYFDRLV 331
                  RL+
Sbjct: 387 TCEGALKRLI 396


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/573 (39%), Positives = 349/573 (60%), Gaps = 16/573 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +  L+QIHA+ + T L +  ++L+       +A+ + + Y  R+F+ I  P++F +++LI
Sbjct: 32  LKPLQQIHARIIITGLGRT-RSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLI 90

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              ++   + PQ  +L  R +   N+    +TF   +K+ A L AFS G+  H H++  G
Sbjct: 91  TLTSKF--SFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICG 148

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
              D Y+  +L+ FYA  GH+ +A KVFD M E+++V+WN MI  + Q G    A++LF 
Sbjct: 149 YGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFF 208

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            MQ L  +PD  TF S+ SACA +  + LG W H YI R+C      +V++  +L++MY 
Sbjct: 209 LMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNC---FDLNVVLGTALMNMYS 265

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           +CG++  AR+VF+SM ++++ +W ++I G+ +HG    A++ F+ +  +    PN++TFV
Sbjct: 266 RCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGP-RPNNVTFV 324

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P 403
            VLSAC H G+V EGR  F  M  EY + P +EH  C+VD+L RAG+++EA   + N  P
Sbjct: 325 AVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSP 384

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWN 461
            +P   +W ++L AC K H +  L  EVA+ +  IE E     G YV+LS +YA A R +
Sbjct: 385 KEPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSIEPEN---PGHYVMLSNIYALAGRMD 440

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
            V  +R +M    + KE G S+I++D   + F  GD SHP+T QIY +LD +  + +  G
Sbjct: 441 RVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAG 500

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           Y P  S++ M +  ++ ++ +LR HSE+LAIA G+L    G+ IR+ KNLR+C+DCH   
Sbjct: 501 YIPA-SESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAI 559

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K IS I N EI VRDR RFHHFKDGSCSC DYW
Sbjct: 560 KYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/584 (39%), Positives = 343/584 (58%), Gaps = 17/584 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL++ T  + +   +++H + +   L  + +  +  S +  +A   D+  A  +F ++ 
Sbjct: 153 SLLNAFTNPELLQLGQKVHMEIVEAGLELEPR--VGTSLVGMYAKCGDISKARVIFDRLP 210

Query: 95  NPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
             N  TW  LI   A+   VD    A+ L + M +Q  V P+K TF   L+ C    A  
Sbjct: 211 EKNVVTWTLLIAGYAQQGQVDV---ALELLETM-QQAEVAPNKITFASILQGCTTPAALE 266

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GK+ H +I + G   ++++ NSLI  Y  CG L+ A K+F ++  R +V+W  M+  + 
Sbjct: 267 HGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q G  D A+ LFRRMQ    +PD  TF S+ ++C+  A L  G   H  ++ H  ++L  
Sbjct: 327 QLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV-HAGYNL-- 383

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF-ALHGRAEAALKYFDRL 330
           DV + ++L+ MY KCGS+D A  VF  M +R++ +W +II G  A HGR   AL+YFD++
Sbjct: 384 DVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQM 443

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             ++   P+ +TF  VLSAC H G+V EGR +F  M  +Y I P++EHY C VDLL RAG
Sbjct: 444 K-KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 502

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
           +++EA +++ +MP  P   +W +LL AC + H+ V   E  A+ V++ +     G YV L
Sbjct: 503 HLEEAENVILSMPFIPGPSVWGALLSAC-RVHSDVERGERAAENVLKLDPDD-DGAYVAL 560

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A R+ D   VR++M  + V KEPG S IE+DG  H F   D SHP+++QIY  L
Sbjct: 561 SSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVEL 620

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             + E++K  GY PD ++  + D  ++ K+  L  HSERLAI  G++   PGMPIR+ KN
Sbjct: 621 GKLTEQIKEMGYVPD-TRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKN 679

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH  TK IS++   EII RD  RFHHF DG CSC D+W
Sbjct: 680 LRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 197/391 (50%), Gaps = 13/391 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
            LL      +S+ Q +++HA  L++ +  Q    L  + +  +A    L  A RVF  I 
Sbjct: 52  GLLQECARLRSLEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + N  +W  +I A     +   +A   ++ M   G   PDK TF   L A         G
Sbjct: 110 DRNIVSWTAMIEAFVAG-NKNLEAFKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQLG 167

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           ++ H  I + GL  +  +  SL+  YA CG +  A  +FD + E+++V+W ++I  + Q 
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G+ D AL+L   M Q    P+  TF SI   C   A L  G   H YI++        ++
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQ---SGYGREL 284

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V NSLI MYCKCG L+ AR++F  +P RD+ +W +++ G+A  G  + A+  F R+  +
Sbjct: 285 WVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM-QQ 343

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNI 392
           +   P+ +TF  VL++C+    + EG+     +++  YN+   L+    LV + A+ G++
Sbjct: 344 QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSM 401

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           D+A  LV N   + + V W +++  CC +H 
Sbjct: 402 DDA-SLVFNQMSERNVVAWTAIITGCCAQHG 431



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 158/301 (52%), Gaps = 10/301 (3%)

Query: 117 QAIVLFQRMIEQGN-VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           +A+ +   MI QG  V  D   F   L+ CA L +  QG++ HA I K G+  + Y+ N+
Sbjct: 30  EALGIMNTMILQGTRVYSD--VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 87

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
           L+  YA CG L  A +VFD++ +R++VSW  MI+AFV   +   A K +  M++   +PD
Sbjct: 88  LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
             TF S+ +A      L LG   H  I+   +  L  +  V  SL+ MY KCG +  AR 
Sbjct: 148 KVTFVSLLNAFTNPELLQLGQKVHMEIV---EAGLELEPRVGTSLVGMYAKCGDISKARV 204

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F+ +P++++ +W  +I G+A  G+ + AL+  + +   E  +PN ITF  +L  C    
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE-VAPNKITFASILQGCTTPA 263

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
            +  G+     +I +      L     L+ +  + G ++EA  L S++P + D V W ++
Sbjct: 264 ALEHGKKVHRYII-QSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAM 321

Query: 415 L 415
           +
Sbjct: 322 V 322


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/619 (38%), Positives = 355/619 (57%), Gaps = 18/619 (2%)

Query: 1   MAVAIVQGGPPTPQTHSHS-IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRT 59
           M  A V    P     S++ +   +RN        SLL            K +H Q ++ 
Sbjct: 49  MLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKY 108

Query: 60  ALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118
            L   H  L I + +++ +A+  DL  A  +F ++ + N   W ++I    ++     +A
Sbjct: 109 ML---HSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN-HCPNEA 164

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           ++L+++M E G   PD+ T    + ACA L     G + H+HI +  +     + ++L++
Sbjct: 165 LLLYKKMEEDG-FSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--ILFEPDGY 236
            YA CG L  A +VFD + ++ + +W+ +I  +V+      AL+LFR +       P+  
Sbjct: 224 MYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 237 TFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           T  ++ SACA L  L  G W H YI R    HS    V +NNSLIDM+ KCG +D A+++
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHS----VSLNNSLIDMFSKCGDIDAAKRI 339

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+SM  +DL SWNS++ G ALHG    AL  F  L+      P+ ITF+GVL+AC+H G+
Sbjct: 340 FDSMSYKDLISWNSMVNGLALHGLGREALAQF-HLMQTTDLQPDEITFIGVLTACSHAGL 398

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V EG+  F  +   Y +    EHYGC+VDLL RAG + EA   +  MP++PD  IW S+L
Sbjct: 399 VQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSML 458

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            AC + + ++ L EE A+ ++E E     GVY+LLS +YA  + WN+V  VR+LM +KG+
Sbjct: 459 GAC-RVYNNLELGEEAARCLLELEP-TNDGVYILLSNIYARRKMWNEVKKVRELMNEKGI 516

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            K PGCSS+ ID IAH F AGD SHP+  +I   L  + EKLK  GY  D S+  +++  
Sbjct: 517 QKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEV-LLNID 575

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           D+ K+ S+  HSE+LA+  G+L  + G  I + KNLRVC DCH + KL+S+I+  +I +R
Sbjct: 576 DNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLR 635

Query: 596 DRARFHHFKDGSCSCMDYW 614
           DR RFHHFKDGSCSC DYW
Sbjct: 636 DRNRFHHFKDGSCSCRDYW 654



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 189/350 (54%), Gaps = 15/350 (4%)

Query: 74  IIHFASFADLD--YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           I H  S   L   YA+ VF      +  TWN+++RA   S +   +A+  +  M+E+   
Sbjct: 17  IAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNS-NMPRRALQSYTEMLERSRN 75

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           +PD+ TFP  LK CA L  F  GK  H  + K  L SD+YI  +L++ YA+CG L  A  
Sbjct: 76  VPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARF 135

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           +F+ M  R+ V W  MI  +++    + AL L+++M+   F PD  T  ++ SACA L  
Sbjct: 136 LFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKD 195

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L +GM  H++I R  D  +    ++ ++L++MY KCG L  ARQVF+ +  +D+ +W+++
Sbjct: 196 LGVGMKLHSHI-REMDMKICA--VLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSAL 252

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR---DYFDVMI 367
           I G+  + R+  AL+ F  +    +  PN +T + V+SAC   G +  GR   DY     
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQ 312

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             ++++        L+D+ ++ G+ID A  +  +M  K D + W S+++ 
Sbjct: 313 KGHSVSL----NNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNG 357


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 355/601 (59%), Gaps = 19/601 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   +  G   N  S LS L  C   ++++  K +HAQ +   L    +  +  S I  
Sbjct: 246 LFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIR--VATSLIRM 303

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           + +   ++ A RVF  ++  +  +W  +I   A + + +  A  LF  M E+G + PD+ 
Sbjct: 304 YTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIE-DAFGLFATMQEEG-IQPDRI 361

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   + ACA     +  ++ H+ +   G  +D+ ++ +L+H YA CG +  A +VFD M
Sbjct: 362 TYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAM 421

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             R +VSW+ MI A+V+ G    A + F  M+    EPDG T+ ++ +AC  L  L +GM
Sbjct: 422 PRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGM 481

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             +   ++     LV+ V + N+LI M  K GS++ AR +F++M +RD+ +WN++I G++
Sbjct: 482 EIYTQAIKA---DLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYS 538

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           LHG A  AL  FDR++ +E F PNS+TFVGVLSAC+  G V EGR +F  ++    I P 
Sbjct: 539 LHGNAREALYLFDRML-KERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPT 597

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ- 434
           ++ YGC+VDLL RAG +DEA  L+ +MP+KP + IW SLL AC + H ++ ++E  A++ 
Sbjct: 598 VKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVAC-RIHGNLDVAERAAERC 656

Query: 435 -VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
            +I+   G    VYV LS +YA+A  W +V  VRK+M  +G+ KE GC+ IE+ G  H F
Sbjct: 657 LMIDPYDG---AVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTF 713

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
              D SHP   +IY  L  +   +K  GY P  +Q  + D  +  K+ ++  HSE+LAIA
Sbjct: 714 VVEDRSHPLVGEIYAELARLMNAIKREGYIP-ITQNVLHDVGEQQKEEAISYHSEKLAIA 772

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            G+L+L  G PIR++KNLRVC DCH  +K IS++   EII RD +RFHHFKDG CSC DY
Sbjct: 773 YGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDY 832

Query: 614 W 614
           W
Sbjct: 833 W 833



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 207/425 (48%), Gaps = 32/425 (7%)

Query: 11  PTPQTHSHSIFNNN-------RNEGSFNNH------SSLLSSLTECKSMSQLKQIHAQAL 57
           P P     S F          +  G   NH        L    TE +  +  KQ+     
Sbjct: 25  PVPSARFRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQV----- 79

Query: 58  RTALPQQHKTLLIY---SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
           R  + Q  + L IY   + I  ++   ++  A ++F  +EN    TWN LI   A+    
Sbjct: 80  RDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHV 139

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
           K +A  LF++M+++G + P   TF   L AC+     + GK+ HA +   G VSD  I  
Sbjct: 140 K-EAFALFRQMVDEG-LEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGT 197

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEP 233
           +L+  Y   G +D A +VFD +  R + ++NVM+  + + G+++ A +LF RM Q+  +P
Sbjct: 198 ALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKP 257

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  +F SI   C     L+ G   HA  +   +  LV D+ V  SLI MY  CGS++ AR
Sbjct: 258 NKISFLSILDGCWTPEALAWGKAVHAQCM---NAGLVDDIRVATSLIRMYTTCGSIEGAR 314

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           +VF++M  RD+ SW  +I G+A +G  E A   F  +  EE   P+ IT++ +++AC   
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM-QEEGIQPDRITYMHIMNACAIS 373

Query: 354 GMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
             ++  R+ +  V I  +    ++     LV + A+ G I +A  +   MP + D V W 
Sbjct: 374 ANLNHAREIHSQVDIAGFGTDLLVST--ALVHMYAKCGAIKDARQVFDAMPRR-DVVSWS 430

Query: 413 SLLDA 417
           +++ A
Sbjct: 431 AMIGA 435


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/602 (40%), Positives = 351/602 (58%), Gaps = 23/602 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKT----LLIYSR 73
           F+  R  G   N+ +    L  C  +      K +H   L+T   +        L +Y+R
Sbjct: 135 FSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTR 194

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
                   D D A+R F  +   +   W+ +I   A+S  ++ +A+ +F +M  +  V+P
Sbjct: 195 C------GDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSE-KALEIFCQM-RRAFVIP 246

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++ TF   L+A A + +    K  H H  K GL +DV+++N+L+  YA CG ++ + ++F
Sbjct: 247 NQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELF 306

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           + + +R+ VSWN +I ++VQ G+ + AL LF  M +   +    T+ SI  ACA LA L 
Sbjct: 307 EALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALE 366

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG+  H    +        DV V N+LIDMY KCGS+  AR +F+ +  RD  SWN+II 
Sbjct: 367 LGLQVHCLTAKTI---YGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+++HG    A+K F+ L+ E    P+ +TFVGVLSAC++ G + EG+ YF  M  +Y I
Sbjct: 424 GYSMHGLGVEAIKMFN-LMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGI 482

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P +EHY C+V L+ R+GN+D+A+  + ++P +P  +IWR+LL AC   H  V L    A
Sbjct: 483 EPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVI-HNDVELGRISA 541

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           ++V+E E       +VLLS +YA ARRW +V  VRK M  KGV KEPG S IE  G  H 
Sbjct: 542 QRVLELEPRD-EASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHC 600

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F   DTSH   K I G L+ ++ K +  GY+P  + A ++D  DD K+  L LHSERLA+
Sbjct: 601 FTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLN-AVLLDVEDDEKERLLWLHSERLAL 659

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++ +  G PIR+ KNLR+C DCH V KLIS+I   +IIVRD  RFHHF++GSCSC D
Sbjct: 660 AFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCAD 719

Query: 613 YW 614
           YW
Sbjct: 720 YW 721



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF ++   N+ ++ TLI   A+S +   +A  LF R+  +G+ L +   F   LK    +
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQS-NKFIEAFELFARLHGEGHEL-NPFVFTTVLKLLVSM 59

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G+  H  + K G  S+ +I  +LI  Y+  G + +A +VFD +  + +VSW  MI
Sbjct: 60  EWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            ++ +   F  AL+ F +M++  F+P+ +TF  +  AC GL     G   H  +L+    
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLK---T 176

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           +   D+ V   L+++Y +CG  D A + F  MPK D+  W+ +I  FA  G++E AL+ F
Sbjct: 177 NYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIF 236

Query: 328 DRLVVEESFS-PNSITFVGVLSA 349
            ++    +F  PN  TF  VL A
Sbjct: 237 CQM--RRAFVIPNQFTFSSVLQA 257


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/580 (40%), Positives = 342/580 (58%), Gaps = 16/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L +C S SQ+KQ+ A  +         +      +   +SF DL YA  +F  I  P++ 
Sbjct: 8   LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPSTN 67

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP--DKHTFPFALKACAYLFAFSQGKQA 157
            WN +IR  A S D  P   V + R +   N L   D  T  FALKACA   A S+  Q 
Sbjct: 68  DWNAVIRGTALSSD--PANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQL 125

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H+ + + G  +DV +  +L+  YA  G LDLA K+FD M +  + SWN +I  F Q    
Sbjct: 126 HSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRP 185

Query: 218 DSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
             A+  F+RM++     P+  T Q    AC+ L  L  G   H YI+   +  L ++V V
Sbjct: 186 ADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIV---EEKLDSNVQV 242

Query: 276 NNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
            N +IDMY KCGS+D A  VFE+M   + L +WN++I+ FA+HG    AL  F++L    
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLG-RS 301

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             SP++++++ VL ACNH G+V +G   F+ M  +  + P ++HYG +VDLL RAG + E
Sbjct: 302 GMSPDAVSYLAVLCACNHAGLVEDGLKLFNSM-TQRGLEPNIKHYGSMVDLLGRAGRLKE 360

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A  +VS++P  P+ V+W++LL AC + +  V ++E  +++++E  G I  G +VLLS VY
Sbjct: 361 AYDIVSSLPF-PNMVLWQTLLGAC-RTYGDVEMAELASRKLVEM-GFISCGXFVLLSNVY 417

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A+ +RW+DVG VR  M  + V K PG S IEI G  ++F  GD SH   ++IY  LD I+
Sbjct: 418 AARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEIN 477

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            ++K+ GY+ D S   + D  D+ K+++L  HSE+LA+A G+   + G PI+V KNLR+C
Sbjct: 478 LRIKAYGYSADTSNV-LHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRIC 536

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH V KLIS+I+  EIIVRDR RFH FK+G CSC DYW
Sbjct: 537 GDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/568 (41%), Positives = 338/568 (59%), Gaps = 19/568 (3%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           + HA A+R+ L +    + + + I+  +    D+  A  VF  +   NS +WN +I   A
Sbjct: 182 EAHAFAIRSGLEE---LVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ D++ +A+ LF RM+E+G  + D      AL+AC  L    +G + H  + + GL S+
Sbjct: 239 QNGDSR-EALALFNRMVEEGVDVTDVSVLA-ALQACGELGCLDEGMRVHELLVRIGLDSN 296

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V + N+LI  Y+ C  +DLA+ VFD +  R+ VSWN MI    Q G  + A++LF RMQ+
Sbjct: 297 VSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQL 356

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCG 287
              +PD +T  S+  A A ++      W H Y +R H D     DV V  +LIDMY KCG
Sbjct: 357 ENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ----DVYVLTALIDMYAKCG 412

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++IAR +F S  +R + +WN++I G+  HG  +AA++ F+ +       PN  TF+ VL
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK-SIGIVPNETTFLSVL 471

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SAC+H G+V EGR+YF  M  +Y + P +EHYG +VDLL RAG +DEA   +  MPM P 
Sbjct: 472 SACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPG 531

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY-VLLSRVYASARRWNDVGLV 466
             ++ ++L AC K H +V L+EE A+++ E   G   GVY VLL+ +YA+A  W DV  V
Sbjct: 532 LSVYGAMLGAC-KLHKNVELAEESAQKIFEL--GPQEGVYHVLLANIYANASMWKDVARV 588

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R  M   G+ K PG S I++    H F++G T+H Q K+IY  L  + E++K+ GY PD 
Sbjct: 589 RTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDT 648

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
              ++ D  DD K   L  HSE+LAIA G++   PG  I++ KNLRVC DCH  TKLIS 
Sbjct: 649 D--SIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISL 706

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +   EII+RD  RFHHFKDG CSC DYW
Sbjct: 707 VTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 168/335 (50%), Gaps = 16/335 (4%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF ++   +   WN L+   AR+  A+  A+ +  RM E+    PD  T    L AC
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLAR-MAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A +  ++AHA   + GL   V +  +++  Y  CG +  A  VFD M  ++ VSWN
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MID + Q G+   AL LF RM +   +    +  +   AC  L  L  GM  H  ++R 
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR- 290

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L ++V V N+LI MY KC  +D+A  VF+ + +R   SWN++ILG A +G +E A+
Sbjct: 291 --IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAV 348

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YG 380
           + F R+ + E+  P+S T V V+ A        + R      I+ Y+I   L+       
Sbjct: 349 RLFTRMQL-ENVKPDSFTLVSVIPALADISDPLQAR-----WIHGYSIRLHLDQDVYVLT 402

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L+D+ A+ G ++ A  ++ N   +   + W +++
Sbjct: 403 ALIDMYAKCGRVNIA-RILFNSARERHVITWNAMI 436



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 9/311 (2%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P A+  F  M   G   P   TF   LK CA     + G+  HA +  RG+ S+     +
Sbjct: 41  PAALAAFVAMSSAG-APPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEP 233
           L + YA C     A +VFD M  R  V+WN ++  + + G    A+++  RMQ      P
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D  T  S+  ACA    L+    AHA+ +R     LV    V  +++D YCKCG +  AR
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVN---VATAILDAYCKCGDIRAAR 216

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            VF+ MP ++  SWN++I G+A +G +  AL  F+R+ VEE      ++ +  L AC   
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRM-VEEGVDVTDVSVLAALQACGEL 275

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G + EG    ++++    +   +     L+ + ++   +D A H+   +  +   V W +
Sbjct: 276 GCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ-VSWNA 333

Query: 414 LLDACCKKHAS 424
           ++  C +   S
Sbjct: 334 MILGCAQNGCS 344


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/568 (41%), Positives = 338/568 (59%), Gaps = 19/568 (3%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           + HA A+R+ L +    + + + I+  +    D+  A  VF  +   NS +WN +I   A
Sbjct: 182 EAHAFAIRSGLEE---LVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ D++ +A+ LF RM+E+G  + D      AL+AC  L    +G + H  + + GL S+
Sbjct: 239 QNGDSR-EALALFNRMVEEGVDVTDVSVLA-ALQACGELGCLDEGMRVHELLVRIGLDSN 296

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V + N+LI  Y+ C  +DLA+ VFD +  R+ VSWN MI    Q G  + A++LF RMQ+
Sbjct: 297 VSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQL 356

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCG 287
              +PD +T  S+  A A ++      W H Y +R H D     DV V  +LIDMY KCG
Sbjct: 357 ENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ----DVYVLTALIDMYAKCG 412

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++IAR +F S  +R + +WN++I G+  HG  +AA++ F+ +       PN  TF+ VL
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK-SIGIVPNETTFLSVL 471

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SAC+H G+V EGR+YF  M  +Y + P +EHYG +VDLL RAG +DEA   +  MPM P 
Sbjct: 472 SACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPG 531

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY-VLLSRVYASARRWNDVGLV 466
             ++ ++L AC K H +V L+EE A+++ E   G   GVY VLL+ +YA+A  W DV  V
Sbjct: 532 LSVYGAMLGAC-KLHKNVELAEESAQKIFEL--GPQEGVYHVLLANIYANASMWKDVARV 588

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R  M   G+ K PG S I++    H F++G T+H Q K+IY  L  + E++K+ GY PD 
Sbjct: 589 RTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDT 648

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
              ++ D  DD K   L  HSE+LAIA G++   PG  I++ KNLRVC DCH  TKLIS 
Sbjct: 649 D--SIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISL 706

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +   EII+RD  RFHHFKDG CSC DYW
Sbjct: 707 VTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 168/335 (50%), Gaps = 16/335 (4%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF ++   +   WN L+   AR+  A+  A+ +  RM E+    PD  T    L AC
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLAR-MAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A +  ++AHA   + GL   V +  +++  Y  CG +  A  VFD M  ++ VSWN
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MID + Q G+   AL LF RM +   +    +  +   AC  L  L  GM  H  ++R 
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR- 290

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L ++V V N+LI MY KC  +D+A  VF+ + +R   SWN++ILG A +G +E A+
Sbjct: 291 --IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAV 348

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YG 380
           + F R+ + E+  P+S T V V+ A        + R      I+ Y+I   L+       
Sbjct: 349 RLFTRMQL-ENVKPDSFTLVSVIPALADISDPLQAR-----WIHGYSIRLHLDQDVYVLT 402

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L+D+ A+ G ++ A  ++ N   +   + W +++
Sbjct: 403 ALIDMYAKCGRVNIA-RILFNSARERHVITWNAMI 436



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 153/322 (47%), Gaps = 10/322 (3%)

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           +RA A   D  P A+  F  M   G   P   TF   LK CA     + G+  HA +  R
Sbjct: 31  LRASAARSDL-PAALAAFVAMSSAG-APPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR 88

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G+ S+     +L + YA C     A +VFD M  R  V+WN ++  + + G    A+++ 
Sbjct: 89  GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMV 148

Query: 225 RRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
            RMQ      PD  T  S+  ACA    L+    AHA+ +R     LV    V  +++D 
Sbjct: 149 VRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVN---VATAILDA 205

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           YCKCG +  AR VF+ MP ++  SWN++I G+A +G +  AL  F+R+ VEE      ++
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRM-VEEGVDVTDVS 264

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            +  L AC   G + EG    ++++    +   +     L+ + ++   +D A H+   +
Sbjct: 265 VLAALQACGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL 323

Query: 403 PMKPDAVIWRSLLDACCKKHAS 424
             +   V W +++  C +   S
Sbjct: 324 DRRTQ-VSWNAMILGCAQNGCS 344


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 345/590 (58%), Gaps = 25/590 (4%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQ----HKTLL-IYSRIIHFASFADLDY 85
           +++++    C ++  L   K +H+ +++ A   +    + TLL +YS+        DL+ 
Sbjct: 353 ATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKC------GDLNS 406

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF +++     +W ++I    R       AI LF  M  +G V+PD +     L AC
Sbjct: 407 AIRVFERMDEKTVVSWTSMITGYVRE-GLSDGAIKLFDEMKSRG-VVPDVYAVTSILNAC 464

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A       GK  H +I +  L ++ +++N+L   YA CG +  A+ VF +M ++ ++SWN
Sbjct: 465 AINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWN 524

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            MI  + +    + AL LF  MQ   +PDG T   I  ACA LA L  G   H Y LR+ 
Sbjct: 525 TMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRN- 583

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 D  V N+++DMY KCG L +AR +F+ +P +DL SW  +I G+ +HG    A+ 
Sbjct: 584 --GYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAIN 641

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+++ +     P+ ++F+ +L AC+H G++ EG   F++M  E  I P LEHY C+VDL
Sbjct: 642 TFNQMRMT-GIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDL 700

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           LAR GN+ +A   +  MP+KPDA IW +LL   C+ H  V L+E+VA+++ E E    +G
Sbjct: 701 LARTGNLVKAHKFIKAMPIKPDATIWGALL-CGCRIHHDVKLAEKVAERIFELEPE-NTG 758

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            YVLL+ +YA A +W +V  +RK +  +G+ K PGCS IEI G  + F AGD S PQ K+
Sbjct: 759 YYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKK 818

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           I   L  +  K+K  GY+P  + A +  DE +  K+ +L  HSE+LA+A G+LNL PG  
Sbjct: 819 IELLLKRLRSKMKEEGYSPKTAYALLNADERE--KEVALCGHSEKLAMAFGMLNLPPGKT 876

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCHE+ K +S+  + EII+RD +RFHHFKDGSCSC  YW
Sbjct: 877 IRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           +  +    DL     VF ++     F WN +I   + S +   ++I LF++M+E G + P
Sbjct: 192 VFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNY-GESINLFKQMLELG-IKP 249

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           + +TF   LK  A +    +G+Q H  I K G  S   + NSLI FY     +  A K+F
Sbjct: 250 NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLF 309

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D + +R ++SWN MI  +V+ G  D  +++F +M +   + D  T  ++  ACA + TL 
Sbjct: 310 DELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL 369

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG   H+Y ++    +L  +V  NN+L+DMY KCG L+ A +VFE M ++ + SW S+I 
Sbjct: 370 LGKVLHSYSIKAA--TLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+   G ++ A+K FD +       P+      +L+AC   G +  G+   D  I E N+
Sbjct: 428 GYVREGLSDGAIKLFDEM-KSRGVVPDVYAVTSILNACAINGNLKSGKIVHD-YIRENNL 485

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                    L D+ A+ G++ +A  + S+M  K D + W +++    K
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGGYTK 532



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 11/322 (3%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L+ CA   +   G++  + I   G++ D  +   L+  Y  CG L     VFD + E  +
Sbjct: 157 LQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKI 216

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
             WN+MI  +   G +  ++ LF++M ++  +P+ YTF SI    A +A +  G   H  
Sbjct: 217 FLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGL 276

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           I +   +S  T   V NSLI  Y     +  A+++F+ +  RD+ SWNS+I G+  +G  
Sbjct: 277 ICKLGFNSYNT---VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLD 333

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           +  ++ F +++V      +  T V V  AC + G +  G+      I    +   +    
Sbjct: 334 DRGIEIFIKMLV-FGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
            L+D+ ++ G+++ A+ +   M  K   V W S++    ++     LS+   K   E + 
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKT-VVSWTSMITGYVREG----LSDGAIKLFDEMKS 447

Query: 441 -GICSGVYVLLSRVYASARRWN 461
            G+   VY + S + A A   N
Sbjct: 448 RGVVPDVYAVTSILNACAINGN 469


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/608 (38%), Positives = 360/608 (59%), Gaps = 24/608 (3%)

Query: 13  PQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYS 72
           P + S      N  + + + HS L  S++   + + + Q+ +Q +   +P  H  L+   
Sbjct: 26  PSSTSALTLCENPPQITESKHSHLTKSIS---NHAHMNQMLSQMIMNYIPIDHLNLM--- 79

Query: 73  RIIHFA----SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           ++I F+     FA     F  FY     +S   N++IR C    +    ++ ++ +M + 
Sbjct: 80  KLIDFSVSSHGFAASALLFTQFYGF--IDSDLCNSMIR-CYTDSNKHLHSVFIYTQMWKN 136

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G + PD  TFP  LK+ A L     GK  H  I + G  S+VY++ +L++ Y +C  +  
Sbjct: 137 G-IFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSD 195

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A +VFD + +R++VSWN +I  +     F   + +FR MQI   +P   T   +  ACA 
Sbjct: 196 ARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAH 255

Query: 248 LATLSLGMWAHAYILRHCDHS-LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
           L  L+ G W   YI    DH+ L  +V V  +LIDMY KCG +D A ++F++M  +++ +
Sbjct: 256 LGALNQGRWIDDYI----DHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYT 311

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN +I G+A++GR E+AL+ F R+++E+ F P+ +TF+GVL AC H+G+V+EGR YF  M
Sbjct: 312 WNVLISGYAMNGRGESALQAFSRMIMEK-FKPDEVTFLGVLCACCHQGLVNEGRTYFTSM 370

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             E+ + P +EHYGC+VDLL RAG +DEA  L+  M M+PD +IWR LL A C+ H ++ 
Sbjct: 371 KEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGA-CRIHGNIQ 429

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           L E   K+++E E       YVLL+ +YA  +RW+ VG VR++M  + V K PGCSSIEI
Sbjct: 430 LGEFAIKKLLELEPNNGEN-YVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEI 488

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           D + +EF   +   P  +++Y  L  +++KLK  GY  D   A+  D  ++ K+ SL  H
Sbjct: 489 DNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMAS-YDIEEEEKEHSLMYH 547

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LA+A G+L    G+ +R+ KNLR+C+DCH   K++S+++  +I VRDR RFHHF  G
Sbjct: 548 SEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGG 607

Query: 607 SCSCMDYW 614
           +CSC DYW
Sbjct: 608 ACSCKDYW 615


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 337/566 (59%), Gaps = 25/566 (4%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           H Q ++     ++  +L    +  +A   DL  A RVF  +   +    N +I A ++  
Sbjct: 33  HCQIMKMGF--EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHG 90

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
             + +A  LF  M E+ +      ++   +     L   +  +     +F    V DV  
Sbjct: 91  YVE-EARNLFDNMTERNSC-----SWNSMITCYCKLGDINSARL----MFDCNPVKDVVS 140

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
            N++I  Y     L  A ++F  M   R+ V+WN MI A+VQ GEF +A+ +F++MQ   
Sbjct: 141 WNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN 200

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            +P   T  S+ SACA L  L +G W H YI       L  DV++ N+LIDMYCKCG+L+
Sbjct: 201 VKPTEVTMVSLLSACAHLGALDMGEWIHGYIR---TKRLKIDVVLGNALIDMYCKCGALE 257

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFVGVLSA 349
            A  VF  + ++++  WNSII+G  ++GR E A+  F  +V+E E   P+ +TFVG+LS 
Sbjct: 258 AAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAF--IVMEKEGIKPDGVTFVGILSG 315

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C+H G++S G+ YF  M+  Y + P +EHYGC+VDLL RAG + EAL L+  MPMKP+++
Sbjct: 316 CSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSM 375

Query: 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRK 468
           +  SLL AC + H    L E+V +Q++E +   C  G YV LS +YAS  RW+DV   RK
Sbjct: 376 VLGSLLRAC-QIHKDTKLGEQVTQQLLELDP--CDGGNYVFLSNLYASLSRWDDVNTCRK 432

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           LM  +GV K PGCSSIE++ I HEF AGDTSHPQ  QI  FLD I ++LK +G+ P+ + 
Sbjct: 433 LMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTAN 492

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
             + D  ++ K+ ++R HSER+A+A G+++  PG  IRV KNLR C DCH   KLIS  F
Sbjct: 493 V-LHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAF 551

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
             EIIVRDR RFHHF++GSCSC DYW
Sbjct: 552 KREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 136/290 (46%), Gaps = 16/290 (5%)

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           + +VLP K +F   L++CA       G+  H  I K G   D+ +   L+ FYA  G L 
Sbjct: 3   RNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLK 62

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS-ITSACA 246
            A +VF  M  R +V+ N MI A  + G  + A  LF  M    E +  ++ S IT  C 
Sbjct: 63  CAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT---ERNSCSWNSMITCYC- 118

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM-PKRDLT 305
                 LG    A ++  C+   V DV+  N++ID YCK   L  A+++F  M   R+  
Sbjct: 119 -----KLGDINSARLMFDCNP--VKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSV 171

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +WN++I  +   G    A+  F ++   E+  P  +T V +LSAC H G +  G ++   
Sbjct: 172 TWNTMISAYVQCGEFGTAISMFQQM-QSENVKPTEVTMVSLLSACAHLGALDMG-EWIHG 229

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            I    +   +     L+D+  + G ++ A+ +   +  K +   W S++
Sbjct: 230 YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRK-NIFCWNSII 278


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/591 (40%), Positives = 350/591 (59%), Gaps = 25/591 (4%)

Query: 34  SSLLSSLTECKSMS--QLKQIHAQALRTAL------PQQHKTLLIYSRIIHFASFADLDY 85
           SSL S L++C ++S    KQ+HA    T        P + K L +Y+      S  +L +
Sbjct: 3   SSLDSFLSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYA-----LSLGNLSF 57

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A   F QI  P++  WN +IR   +S +    A   ++ MI +   + D  T  F LKAC
Sbjct: 58  AILTFSQIRTPSTNDWNAIIRGFIQSPNP-TNAFAWYKSMISKSRKV-DALTCSFVLKAC 115

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A + A  +  Q H HI ++G ++D  +  +L+  YA  G +D A KVFD M++R + SWN
Sbjct: 116 ARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWN 175

Query: 206 VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  F Q  +   AL LF+RM+I  F+P+  +     SACA L     G   H YI   
Sbjct: 176 ALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVE 235

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAA 323
                  +  V N +IDMY KCG +D A  VFESM  ++D+ +WN++I+ FA+HG    A
Sbjct: 236 ---RFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKA 292

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L+ F+++  +   SP+ ++++ VL ACNH G+V EG   F+ M N   + P ++HYG +V
Sbjct: 293 LELFEKMD-QSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVV 350

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL RAG + EA  +V++MP  PD V+W++LL A  + H +V ++E V+++++E     C
Sbjct: 351 DLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGAS-RTHRNVEIAETVSRKLVEMGSNHC 409

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
            G +VLLS VYA+  RW DVG VR+ M ++ V K PG S IE +G+ H+F+  D SH   
Sbjct: 410 -GDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESW 468

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           ++IY  LD I  ++K  GY  + S   + D  ++ K++ L  HSE+LA+A G+++   G 
Sbjct: 469 REIYAKLDEIRFRVKEYGYVAETS-FVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGT 527

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PI+V KNLR+C DCH V KLIS+I++ EIIVRDR RFH FK+G CSC DYW
Sbjct: 528 PIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/594 (40%), Positives = 346/594 (58%), Gaps = 14/594 (2%)

Query: 25  RNEGSFNNHSSL---LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           + EG   N S++   L ++ E K++   K +H   +R +    +  ++    +  +A   
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF--DNGVVVGTGLLDMYAKCQ 259

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            L YA ++F  +   N  +W+ +I     S D   +A+ LF +MI +  + P   T    
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVXS-DCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L+ACA L   S+G++ H +I K G V D+ + N+L+  YA CG +D A + FD M  +  
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDS 378

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VS++ ++   VQ G    AL +FR MQ+   +PD  T   +  AC+ LA L  G  +H Y
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           ++        TD L+ N+LIDMY KCG +  AR+VF  M + D+ SWN++I+G+ +HG  
Sbjct: 439 LIVR---GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 495

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             AL  F  L+      P+ ITF+ +LS+C+H G+V EGR +FD M  +++I P +EH  
Sbjct: 496 MEALGLFHDLLAL-GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCI 554

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VD+L RAG IDEA H + NMP +PD  IW +LL AC + H ++ L EEV+K+ I+S G
Sbjct: 555 CMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSAC-RIHKNIELGEEVSKK-IQSLG 612

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              +G +VLLS +Y++A RW+D   +R    D G+ K PGCS IEI+GI H F  GD SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
            Q  QI   L+ +  ++K  GY  + S     D  ++ K+  L  HSE+LAIA GILNLK
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECS-FVFQDVEEEEKEQILLYHSEKLAIAFGILNLK 731

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            G PI V KNLRVC DCH   K ++ I   EI VRD  RFHHFK+G+C+C D+W
Sbjct: 732 AGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 206/400 (51%), Gaps = 11/400 (2%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           NN+  LL +  + KS+++ K+IH   L+         L   +R+  + S   +  A R+F
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRL--YLSCNQVVLARRLF 66

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +I NP+   WN +IRA A +      AI L+  M+  G V P+K+T+PF LKAC+ L A
Sbjct: 67  DEIPNPSVILWNQIIRAYAWN-GPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLA 124

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G + H+H    GL SDV++  +L+ FYA CG L  A ++F +M  R +V+WN MI  
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
              +G  D A++L  +MQ     P+  T   +         L  G   H Y +R    S 
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR---RSF 241

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              V+V   L+DMY KC  L  AR++F+ M  R+  SW+++I G+      + AL+ FD+
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++++++  P  +T   VL AC     +S GR     +I    +  +L     L+ + A+ 
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLG-NTLLSMYAKC 360

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKK-HASVVLS 428
           G ID+A+     M  K D+V + +++  C +  +A+V LS
Sbjct: 361 GVIDDAIRFFDXMNPK-DSVSFSAIVSGCVQNGNAAVALS 399



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 161/340 (47%), Gaps = 18/340 (5%)

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           K+ +   L+AC    + ++ K+ H H  K    +D  + + L   Y SC  + LA ++FD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSL 253
            +   S++ WN +I A+   G FD A+ L+  M  +   P+ YT+  +  AC+GL  +  
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G+  H++        L +DV V  +L+D Y KCG L  A+++F SM  RD+ +WN++I G
Sbjct: 128 GVEIHSHAKM---FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
            +L+G  + A++   ++  EE   PNS T VGVL        +  G+      +      
Sbjct: 185 CSLYGLCDDAVQLIMQM-QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC----CKKHASVVLSE 429
            V+   G L+D+ A+   +  A  +   M ++ + V W +++       C K A  +  +
Sbjct: 244 GVVVGTG-LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
            + K  ++          V L  V  +  +  D+   RKL
Sbjct: 302 MILKDAMDP-------TPVTLGSVLRACAKLTDLSRGRKL 334


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/607 (39%), Positives = 348/607 (57%), Gaps = 17/607 (2%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           PP P T+     + +    ++++H+S+L S     S+   +Q+H + L + L     T+L
Sbjct: 46  PPPPSTNPRLASSPH----AYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPD--TVL 99

Query: 70  IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
               +  +A+   + +A R+F  +   N F WN LIRA AR    +  A+ L++ M+E G
Sbjct: 100 STKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYARE-GPREAAVRLYRGMVEHG 158

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            V PD  T+P  LKACA L     G++ H  +       DV++   ++  YA CG +D A
Sbjct: 159 -VEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDA 217

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGL 248
             VFD +  R  V WN MI A+ Q G    AL L R M      P   T  S  SA A  
Sbjct: 218 RAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADA 277

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           A L  G   H +  R           +  SL+DMY K G + +AR +FE + KR+L SWN
Sbjct: 278 AALPRGRELHGFGWRR---GFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWN 334

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           ++I G+ +HG A+ AL  F+++  +   +P++ITFVGVLSACNH GMV E +++F +M+N
Sbjct: 335 AMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVN 394

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
            Y+I P ++HY C++D+L   G  +EA  L+  M ++PD+ IW +LL+  CK H +V L 
Sbjct: 395 AYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNG-CKIHKNVELG 453

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           E   +++IE E    +G YV LS +YA + +W     VRKLMT++G+ K   CS IE+ G
Sbjct: 454 ELALQKLIELEPED-AGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKG 512

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA-AMVDELDDGKQSSLRLHS 547
             H F  GD SHP++ +IYG L+ ++  +   GY PD       VD  DD K++ +R HS
Sbjct: 513 KTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVD--DDEKRNMVRSHS 570

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLAIA G+++  PG  + V KNLRVC+DCH V KLIS+I   EII+RD  R+HHF +G 
Sbjct: 571 ERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGE 630

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 631 CSCKDYW 637


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/597 (38%), Positives = 344/597 (57%), Gaps = 47/597 (7%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP--NSFTWNTLIRACARS 111
           A+ +   +P+++ T+   S I  F     ++ A R+F  +     +  +W+ ++ +C   
Sbjct: 190 AERVFEGMPERN-TIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV-SCYEQ 247

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
            +   +A+VLF  M   G  + +      AL AC+ +     G+  H    K G+   V 
Sbjct: 248 NEMGEEALVLFVEMKGSGVAVDEVVVVS-ALSACSRVLNVEMGRWVHGLAVKVGVEDYVS 306

Query: 172 INNSLIHFYASCGHLDLANKVFDN--------------------------------MLER 199
           + N+LIH Y+SCG +  A ++FD+                                M E+
Sbjct: 307 LKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEK 366

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAH 258
            +VSW+ MI  + Q   F  AL LF+ MQ+    PD     S  SAC  LATL LG W H
Sbjct: 367 DVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIH 426

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           AYI R+    L  +V+++ +LIDMY KCG ++ A +VF +M ++ +++WN++ILG A++G
Sbjct: 427 AYISRN---KLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             E +L  F  +  +    PN ITF+GVL AC H G+V++GR YF+ MI+E+ I   ++H
Sbjct: 484 SVEQSLNMFADMK-KTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKH 542

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           YGC+VDLL RAG + EA  L+ +MPM PD   W +LL AC +KH    + E + +++I+ 
Sbjct: 543 YGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGAC-RKHRDNEMGERLGRKLIQL 601

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           +     G +VLLS +YAS   W +V  +R +M   GV K PGCS IE +G  HEF AGD 
Sbjct: 602 QPD-HDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDK 660

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGIL 557
           +HPQ   I   LD++  KLK  GY P  S+ ++ +DE  + K+++L  HSE+LA+A G++
Sbjct: 661 THPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDE--EEKETALFRHSEKLAVAFGLI 718

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + P  PIRV KNLR+C DCH V KLIS+ F+ +I+VRDR RFHHFK G+CSCMD+W
Sbjct: 719 TISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 187/420 (44%), Gaps = 82/420 (19%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           S+L S L  CK     KQ+ +Q + T L   P     L+ +S   H  +     Y+ R+F
Sbjct: 4   STLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSS--HSTTLVPFHYSLRIF 61

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             + NPN+FTWNT++RA    +   P   +L  ++    +  PD +T+P  L+ CA   +
Sbjct: 62  NHLRNPNTFTWNTIMRA-HLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVS 120

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             +G+Q HAH    G   DVY+ N+L++ YA CG +  A +VF+      LVSWN ++  
Sbjct: 121 EFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180

Query: 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           +VQ GE + A ++F  M     P+  T  S                              
Sbjct: 181 YVQAGEVEEAERVFEGM-----PERNTIAS------------------------------ 205

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESM--PKRDLTSWNSIILGFALHGRAEAALKYFD 328
                 NS+I ++ + G ++ AR++F  +   +RD+ SW++++  +  +   E AL  F 
Sbjct: 206 ------NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFV 259

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGR------------DYF---DVMINEY--- 370
            +      + + +  V  LSAC+    V  GR            DY    + +I+ Y   
Sbjct: 260 EM-KGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSC 318

Query: 371 ----NITPVLEHYGCLVDLLA---------RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               +   + +  G L+DL++         R G+I +A  L  +MP K D V W +++  
Sbjct: 319 GEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEK-DVVSWSAMISG 377


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/580 (40%), Positives = 342/580 (58%), Gaps = 16/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L +C S SQ+KQ+ A  +         +      +   +SF DL YA  +F  I  P++ 
Sbjct: 8   LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPSTN 67

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP--DKHTFPFALKACAYLFAFSQGKQA 157
            WN +IR  A S D  P   V + R +   N L   D  T  FALKACA   A S+  Q 
Sbjct: 68  DWNAVIRGTALSSD--PANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQL 125

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H+ + + G  +DV +  +L+  YA  G LDLA K+FD M +  + SWN +I  F Q    
Sbjct: 126 HSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRP 185

Query: 218 DSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
             A+  F+RM++     P+  T Q    AC+ L  L  G   H YI+   +  L ++V V
Sbjct: 186 ADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIV---EEKLNSNVQV 242

Query: 276 NNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
            N +IDMY KCGS+D A  VFE+M   + L +WN++I+ FA+HG    AL  F++L    
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLG-RS 301

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             SP++++++ VL ACNH G+V +G   F+ M  +  + P ++HYG +VDLL RAG + E
Sbjct: 302 GMSPDAVSYLAVLCACNHAGLVEDGLKLFNSM-TQRGLEPNIKHYGSMVDLLGRAGRLKE 360

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A  +VS++P  P+ V+W++LL AC + +  V ++E  +++++E  G I  G +VLLS VY
Sbjct: 361 AYDIVSSLPF-PNMVLWQTLLGAC-RTYGDVEMAELASRKLVEM-GFISCGDFVLLSNVY 417

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A+ +RW+DVG VR  M  + V K PG S IEI G  ++F  GD SH   ++IY  LD I+
Sbjct: 418 AARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEIN 477

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            ++K+ GY+ D S   + D  D+ K+++L  HSE+LA+A G+   + G PI+V KNLR+C
Sbjct: 478 LRIKAYGYSADTSNV-LHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRIC 536

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH V KLIS+I+  EIIVRDR RFH FK+G CSC DYW
Sbjct: 537 GDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 348/597 (58%), Gaps = 22/597 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           ++EG   +  +L++ L     +  L   K IH  A+R    +        + +  ++   
Sbjct: 240 QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM--YSKCG 297

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            ++ A  +F  ++     +WN+++    ++ + + +AI +F++M+E+G + P   T   A
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE-KAIAVFEKMLEEG-IDPTGVTIMEA 355

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L ACA L    +GK  H  + +  L SD+ + NSLI  Y+ C  +D+A+ +F+N+  R+ 
Sbjct: 356 LHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH 415

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VSWN MI  + Q G    AL  F  M+ L  +PD +T  S+  A A L+      W H  
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGL 475

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           I+R C   L  ++ V  +L+DMY KCG++ +AR++F+ +  R + +WN++I G+  HG  
Sbjct: 476 IIRSC---LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
            AAL  FD++  + +  PN IT++ V+SAC+H G+V EG  +F  M  +Y + P ++HYG
Sbjct: 533 RAALDLFDKMK-KGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE--- 437
            +VDLL RAG I EA   + NMP+ P   ++ +   AC K H ++ + E+ AK++ E   
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGAC-KIHKNIEVGEKAAKKLFELNP 650

Query: 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD 497
            EGG     +VLL+ +YAS  +W+ V  VRK M  KG+ K PGCS +E+    H F++G 
Sbjct: 651 DEGG----YHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGS 706

Query: 498 TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL 557
           T+HPQ+K+IY FL+ +  ++K+ GY PD +   ++D  DD ++  L  HSE+LAIA G+L
Sbjct: 707 TTHPQSKRIYAFLEELVYEIKAAGYVPDTN--LILDVEDDVQEQLLNSHSEKLAIAFGLL 764

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           N  PG  I V KNLRVC DCH  TK IS +   EIIVRD  RFHHFK+G CSC DYW
Sbjct: 765 NTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 192/378 (50%), Gaps = 13/378 (3%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNS 98
           L  C SM +L QI    ++  L  +H   L  ++++  F+ +  ++ A RVF  I++   
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEH---LFQTKLVSLFSKYGSINEAARVFEPIDDKLD 112

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
             ++T+++  A++  +   A+    RM    +V P  + F + LK C       +GK+ H
Sbjct: 113 ALYHTMLKGYAKN-SSLETALAFLCRM-RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
             +      ++V+    +++ YA C  +D A K+FD M ER LVSWN +I  F Q G   
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAK 230

Query: 219 SALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            AL+L  RMQ   + PD  T  ++  A A +  L +G   H Y +R     LV    ++ 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN---IST 287

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L DMY KCGS++ AR +F+ M ++ + SWNS++ G+  +G  E A+  F+++ +EE   
Sbjct: 288 ALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKM-LEEGID 346

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P  +T +  L AC   G +  G+ +    +++ N+   +     L+ + ++   +D A  
Sbjct: 347 PTGVTIMEALHACADLGDLERGK-FVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 398 LVSNMPMKPDAVIWRSLL 415
           + +N+  +   V W +++
Sbjct: 406 IFNNLNGRTH-VSWNAMI 422


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/594 (40%), Positives = 346/594 (58%), Gaps = 14/594 (2%)

Query: 25  RNEGSFNNHSSL---LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           + EG   N S++   L ++ E K++   K +H   +R +    +  ++    +  +A   
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF--DNGVVVGTGLLDMYAKCQ 259

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            L YA ++F  +   N  +W+ +I     S D   +A+ LF +MI +  + P   T    
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVAS-DCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L+ACA L   S+G++ H +I K G V D+ + N+L+  YA CG +D A + FD M  +  
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VS++ ++   VQ G    AL +FR MQ+   +PD  T   +  AC+ LA L  G  +H Y
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           ++        TD L+ N+LIDMY KCG +  AR+VF  M + D+ SWN++I+G+ +HG  
Sbjct: 439 LIVR---GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 495

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             AL  F  L+      P+ ITF+ +LS+C+H G+V EGR +FD M  +++I P +EH  
Sbjct: 496 MEALGLFHDLLAL-GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCI 554

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VD+L RAG IDEA H + NMP +PD  IW +LL AC + H ++ L EEV+K+ I+S G
Sbjct: 555 CMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSAC-RIHKNIELGEEVSKK-IQSLG 612

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              +G +VLLS +Y++A RW+D   +R    D G+ K PGCS IEI+GI H F  GD SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
            Q  QI   L+ +  ++K  GY  + S     D  ++ K+  L  HSE+LAIA GILNLK
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECS-FVFQDVEEEEKEQILLYHSEKLAIAFGILNLK 731

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            G PI V KNLRVC DCH   K ++ I   EI VRD  RFHHFK+G+C+C D+W
Sbjct: 732 AGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 207/400 (51%), Gaps = 11/400 (2%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           NN+  LL +  + KS+++ K+IH   L+         L   +R+  + S   +  A R+F
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRL--YLSCNQVVLARRLF 66

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +I NP+   WN +IRA A +      AI L+  M+  G V P+K+T+PF LKAC+ L A
Sbjct: 67  DEIPNPSVILWNQIIRAYAWN-GPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLA 124

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G + H+H    GL SDV++  +L+ FYA CG L  A ++F +M  R +V+WN MI  
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
              +G  D A++L  +MQ     P+  T   +         L  G   H Y +R    S 
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR---RSF 241

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              V+V   L+DMY KC  L  AR++F+ M  R+  SW+++I G+      + AL+ FD+
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQ 301

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++++++  P  +T   VL AC     +S GR     +I   ++  +L     L+ + A+ 
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLG-NTLLSMYAKC 360

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKK-HASVVLS 428
           G ID+A+     M  K D+V + +++  C +  +A+V LS
Sbjct: 361 GVIDDAIRFFDEMNPK-DSVSFSAIVSGCVQNGNAAVALS 399



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 161/340 (47%), Gaps = 18/340 (5%)

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           K+ +   L+AC    + ++ K+ H H  K    +D  + + L   Y SC  + LA ++FD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSL 253
            +   S++ WN +I A+   G FD A+ L+  M  +   P+ YT+  +  AC+GL  +  
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G+  H++        L +DV V  +L+D Y KCG L  A+++F SM  RD+ +WN++I G
Sbjct: 128 GVEIHSHAKM---FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
            +L+G  + A++   ++  EE   PNS T VGVL        +  G+      +      
Sbjct: 185 CSLYGLCDDAVQLIMQM-QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC----CKKHASVVLSE 429
            V+   G L+D+ A+   +  A  +   M ++ + V W +++       C K A  +  +
Sbjct: 244 GVVVGTG-LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVASDCMKEALELFDQ 301

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
            + K  ++          V L  V  +  +  D+   RKL
Sbjct: 302 MILKDAMDP-------TPVTLGSVLRACAKLTDLSRGRKL 334


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/516 (43%), Positives = 313/516 (60%), Gaps = 14/516 (2%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           WNT+IR  +RS D   +AIVL+  MI +G   P+  TFPF L +CA L +   G + H+H
Sbjct: 2   WNTMIRGYSRS-DNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           I K G  SD+++ N+LIH Y+  G+L+LA  +FD  L R LVS+N MI  + +  + +SA
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM-WAHAYILRHCDHSLVTDVLVNNSL 279
           L LF  MQ     D  T  ++ SACA L    LG    H YI    +     + ++  ++
Sbjct: 121 LCLFGEMQ---NSDEVTLVAVLSACARLGAFDLGKRLYHQYIE---NGVFNQNTILTAAV 174

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSW--NSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +DMY KCGS+D A ++F  + K   T +  NS+I G A HG  E A+  F R ++     
Sbjct: 175 MDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVF-RELISTGLK 233

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P+ +TFVGVL AC H G++ EG+  F+ M N Y I P +EHYGC+VDLL R G ++EA  
Sbjct: 234 PDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYD 293

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           LV  MP + ++VIWR+LL A C+ H +V + E   ++++E E       YVLLS + A A
Sbjct: 294 LVQKMPFEANSVIWRALLSA-CRTHGNVKIGEIAGQKLLEMEAQ-HGARYVLLSNILADA 351

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            +W +   VRK+M D G+ K PG S IE+ G  H F A D SHPQ K+I   L  +  +L
Sbjct: 352 NQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRL 411

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           KS GY P+ +Q  M D  ++ K+S +  HSE+LA+A G++   P   IR+ KNLR+C DC
Sbjct: 412 KSAGYVPNTAQ-VMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADC 470

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
           H+  KL+S I+  EI VRD  RFHHF++GSCSCMD+
Sbjct: 471 HKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 335/580 (57%), Gaps = 11/580 (1%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+L +   C  +S  + +H   ++  +    KT    + +  +A    LD A  VF  + 
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACV--HWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
                TW +LI A AR      +AI LF  M  +G V PD  T    L ACA   +   G
Sbjct: 61  VRTVVTWTSLIAAYARE-GLSDEAIRLFHEMDREG-VSPDIFTITTVLHACACNGSLENG 118

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  H +I +  + S++++ N+L+  YA CG ++ AN VF  M  + ++SWN MI  + + 
Sbjct: 119 KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKN 178

Query: 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
              + AL LF  M +  +PDG T   I  ACA LA+L  G   H +ILR+      +D  
Sbjct: 179 SLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRN---GFFSDQQ 235

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V N+L+DMY KCG   +AR +F+ +P +DL +W  +I G+ +HG    A+  F+ +  + 
Sbjct: 236 VANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMR-QA 294

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+ ++F+ +L AC+H G++ EG  +F+VM +E N+ P LEHY C+VDLLAR+G +  
Sbjct: 295 GIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAM 354

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A   + +MP++PDA IW +LL  C + H  V L+E+VA+ V E E    +G YVLL+  Y
Sbjct: 355 AYKFIKSMPIEPDATIWGALLSGC-RIHHDVKLAEKVAEHVFELEPEN-TGYYVLLANTY 412

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A A +W +V  +R+ +  +G+ K PGCS IE+    H F AG++SHPQ K+I   L  + 
Sbjct: 413 AEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLR 472

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            K+K  GY P  ++ A+++     K+++L  HSE+LA+A GILNL P   IRV KNLRVC
Sbjct: 473 SKMKEEGYFPK-TRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVC 531

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCHE+ K IS+    EI++RD  RFHHFKDG C C  +W
Sbjct: 532 GDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 353/602 (58%), Gaps = 15/602 (2%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSR 73
           S  +FN  R  G   N+ ++  +L  C  +      K +H  AL+      H   +  + 
Sbjct: 221 SLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCY--DHDLFVGIAL 278

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           +  +A   ++  A R+F ++   +   W+ +I   A+S D   +A+ LF RM  Q +V+P
Sbjct: 279 LELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQS-DRSKEALDLFLRM-RQTSVVP 336

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +  TF   L+ACA   +   GKQ H+ + K GL S+V+++N+++  YA CG ++ + K+F
Sbjct: 337 NNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLF 396

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           + + +R+ V+WN +I  +VQ G+ + A+ LF  M +   +P   T+ S+  A A LA L 
Sbjct: 397 EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALE 456

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G+  H+  ++   +    D +V NSLIDMY KCG ++ AR  F+ M KRD  SWN++I 
Sbjct: 457 PGLQIHSLTIKTMYNK---DTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMIC 513

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+++HG +  AL  FD ++      PN +TFVGVLSAC++ G++ +G+ +F+ M  +Y+I
Sbjct: 514 GYSMHGMSMEALNLFD-MMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDI 572

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P +EHY C+V LL R G  DEA+ L+  +  +P  ++WR+LL AC   H  V L    A
Sbjct: 573 KPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVI-HKKVDLGRVCA 631

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           + V+E E       +VLLS +YA+A RW++V  VRK M  K V KEPG S +E  G+ H 
Sbjct: 632 QHVLEMEPHD-DATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHY 690

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F  GDTSHP  K I   L+ +++K +  GY PD   A ++D  DD K+  L +HSERLA+
Sbjct: 691 FSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPD-CNAVLLDVQDDEKERHLWVHSERLAL 749

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++       IR+ KNLR+C DCH V KLIS++   EI++RD  RFHHF+ G CSC D
Sbjct: 750 AYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGD 809

Query: 613 YW 614
           YW
Sbjct: 810 YW 811



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 175/335 (52%), Gaps = 11/335 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L  A ++F ++   N+ ++ TL +  +R      QA+    R+ ++G+ + +   F   L
Sbjct: 86  LQDASKLFDEMPQTNTISFVTLAQGYSRDHQFH-QALHFILRIFKEGHEV-NPFVFTTLL 143

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K    +         HA ++K G  +D ++  +LI  Y+  G++D+A  VFD++  + +V
Sbjct: 144 KLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMV 203

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  M+  + +   ++ +L+LF +M+I+ ++P+ +T      +C GL   ++G   H   
Sbjct: 204 SWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCA 263

Query: 262 LRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           L+ C DH    D+ V  +L+++Y K G +  A+++FE MPK DL  W+ +I  +A   R+
Sbjct: 264 LKGCYDH----DLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRS 319

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           + AL  F R+  + S  PN+ TF  VL AC     +  G+     ++ ++ +   +    
Sbjct: 320 KEALDLFLRM-RQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVL-KFGLNSNVFVSN 377

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            ++D+ A+ G I+ ++ L   +P + D V W +++
Sbjct: 378 AIMDVYAKCGEIENSMKLFEELPDRND-VTWNTII 411



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 27/273 (9%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK  H HI KRG   D++  N L++FY     L  A+K+FD M + + +S+  +   + +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +F  AL    R+ +   E + + F ++      +    L    HA + +   H+   D
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHA---D 170

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V  +LID Y   G++D+AR VF+ +  +D+ SW  ++  +A +   E +L+ F+++ +
Sbjct: 171 AFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRI 230

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC----------L 382
              + PN+ T  G L +C        G + F+V  + +         GC          L
Sbjct: 231 -MGYKPNNFTISGALKSC-------LGLEAFNVGKSVHGCAL----KGCYDHDLFVGIAL 278

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++L A++G I +A  L   MP K D + W  ++
Sbjct: 279 LELYAKSGEIIDAQRLFEEMP-KTDLIPWSLMI 310


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 345/609 (56%), Gaps = 52/609 (8%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL----DYAFRVFYQIENPNSFT 100
            ++Q+KQ HA+ L   L    +   I S ++ F + +      DYA  ++  I +P  F 
Sbjct: 43  GITQIKQAHARILVLGLANDGR---ITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFA 99

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
            N +IR C    D    +I L+  M       P+KHT  F L+AC+  FA  +G Q   H
Sbjct: 100 TNNMIR-CFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTH 158

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDS 219
           + K G V DV++ N+LIH Y +C  ++ A +VFD +   R +VSWN MI  FV+ G+   
Sbjct: 159 VIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISV 218

Query: 220 ALKLFRRM--------------------------------QILFEPDGYTFQSITSACAG 247
           A KLF  M                                +    P+     S+ +A A 
Sbjct: 219 AQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQ 278

Query: 248 LATLSLGMWAH--AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           L TL  G   H  A  LR           +  +L+DMY KCG +D +R +F+ MP++D  
Sbjct: 279 LGTLEYGKRIHSIANSLR-----FPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKW 333

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN +I G A HG  + AL  F++ + +  F P ++TF+GVL+AC+  G+VSEG+ +F +
Sbjct: 334 SWNVMICGLATHGLGQEALALFEKFLTQ-GFHPVNVTFIGVLTACSRAGLVSEGKHFFKL 392

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M + Y I P +EHYGC+VDLL+RAG + +A+ +++ MP  PD V+W S+L +C + H  +
Sbjct: 393 MTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSC-QVHGFI 451

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L EE+  ++I+ +    +G YV L+R++A  R+W DV  VR+LM ++   K  G S IE
Sbjct: 452 ELGEEIGNKLIQMDP-THNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIE 510

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
            +G  H F AGD  H +T +IY  L+++  ++ + GY+ + S + + D  ++ K+++++ 
Sbjct: 511 AEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVS-SVLHDIEEEEKENAIKE 569

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSERLAIA G+L  K G  IR+ KNLRVC DCHEV+K+IS +F  EIIVRD +RFHHFK 
Sbjct: 570 HSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKK 629

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 630 GICSCQDYW 638


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/585 (39%), Positives = 346/585 (59%), Gaps = 17/585 (2%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRI-IHFASFADLDYAFRVF 90
           + ++ L+ C S++ L   KQIHA  + +      +     +++ +   +F D   A  VF
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKD---AREVF 288

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +   +   WNT+IR    S   + +A   F RM+E+G V PD+ T+   L ACA    
Sbjct: 289 ECLSYRDVIAWNTMIRGFVDSGQLE-EAHGTFHRMLEEG-VAPDRATYTTVLSACARPGG 346

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            ++GK+ HA   K GLVSDV   N+LI+ Y+  G +  A +VFD M +R +VSW  ++  
Sbjct: 347 LARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGR 406

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +    +   +   F++M Q   + +  T+  +  AC+    L  G   HA +++     L
Sbjct: 407 YADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKA---GL 463

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           + D+ V N+L+ MY KCGS++ A +VFE M  RD+ +WN++I G   +GR   AL+ ++ 
Sbjct: 464 LADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYE- 522

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++  E   PN+ TFV VLSAC    +V EGR  F  M  +Y I P  +HY C+VD+LARA
Sbjct: 523 VMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARA 582

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G++ EA  ++  +P+KP A +W +LL A C+ H +V + E  A+  ++ E    +G+YV 
Sbjct: 583 GHLREAEDVILTIPLKPSAAMWGALL-AACRIHCNVEIGERAAEHCLKLEPQ-NAGLYVS 640

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YA+A  W DV  +RK M ++GV KEPG S IEI G  H F A D SHP+T++IY  
Sbjct: 641 LSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAE 700

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L+ + +++KS GY PD ++  M D  D+GK+ ++  HSE+LAIA G+++  PG PIR+ K
Sbjct: 701 LETLKKQMKSLGYVPD-TRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISK 759

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH  TK IS+I   EII RD  RFHHFK+G CSC DYW
Sbjct: 760 NLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 203/387 (52%), Gaps = 15/387 (3%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           ++  LL S  + K ++  KQ+H   LR  + P  + T  +     H  S   ++ A ++F
Sbjct: 30  DYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS---VNEARQLF 86

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +  N +  +WN +I   A    A+ +A  LF  +++Q  + PDK TF   L AC+    
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQ-EAFNLFT-LMQQERLEPDKFTFVSILSACSSPAV 144

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            + G++ H  + + GL +D  + N+LI  YA CG +  A +VFD M  R  VSW  +  A
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + + G  + +LK +  M Q    P   T+ ++ SAC  LA L  G   HA+I+    HS 
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHS- 263

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DV V+ +L  MY KCG+   AR+VFE +  RD+ +WN++I GF   G+ E A   F R
Sbjct: 264 --DVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHR 321

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDLLAR 388
           + +EE  +P+  T+  VLSAC   G ++ G++       +  ++ V   +G  L+++ ++
Sbjct: 322 M-LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDV--RFGNALINMYSK 378

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
           AG++ +A  +   MP K D V W +LL
Sbjct: 379 AGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 151/284 (53%), Gaps = 9/284 (3%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D + +   L++C      + GKQ H HI + G+  +VYI N+L+  YA CG ++ A ++F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLS 252
           D    +S+VSWNVMI  +   G    A  LF  MQ    EPD +TF SI SAC+  A L+
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H  ++   +  L  D  V N+LI MY KCGS+  AR+VF++M  RD  SW ++  
Sbjct: 147 WGREIHVRVM---EAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 203

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYN 371
            +A  G  E +LK +  + ++E   P+ IT++ VLSAC     + +G+  +  ++ +EY+
Sbjct: 204 AYAESGYGEESLKTYHAM-LQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               +     L  +  + G   +A  +   +  + D + W +++
Sbjct: 263 SDVRVS--TALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMI 303


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 357/603 (59%), Gaps = 23/603 (3%)

Query: 20   IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTA----LPQQHKTLLIYS 72
            I++  + EG   N  + +  L  C + + L   ++IH++ ++      +  Q+  + +Y+
Sbjct: 433  IYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYA 492

Query: 73   RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            R     S  D   A  +F ++   +  +W  +I   A+S     +A+ +FQ M +Q  + 
Sbjct: 493  RC---GSIKD---ARLLFNKMVRKDIISWTAMIGGLAKS-GLGAEALAVFQDM-QQAGLK 544

Query: 133  PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
            P++ T+   L AC+   A   G++ H  + + GL +D ++ N+L++ Y+ CG +  A +V
Sbjct: 545  PNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQV 604

Query: 193  FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
            FD M +R +V++N MI  +        ALKLF R+Q    +PD  T+ ++ +ACA   +L
Sbjct: 605  FDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 664

Query: 252  SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                  H+ +L+      ++D  + N+L+  Y KCGS   A  VF+ M KR++ SWN+II
Sbjct: 665  EWAKEIHSLVLKD---GYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAII 721

Query: 312  LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
             G A HGR +  L+ F+R+ +E    P+ +TFV +LSAC+H G++ EGR YF  M  ++ 
Sbjct: 722  GGCAQHGRGQDVLQLFERMKME-GIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFG 780

Query: 372  ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            ITP +EHYGC+VDLL RAG +DE   L+  MP + +  IW +LL AC + H +V ++E  
Sbjct: 781  ITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGAC-RIHGNVPVAERA 839

Query: 432  AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
            A+  ++ +    + VYV LS +YA+A  W+    +RKLM  +GVTKEPG S IE+    H
Sbjct: 840  AESSLKLDPD-NAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLH 898

Query: 492  EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
             F A D SHP++++IY  LD +   +K  GY PD +++ M D  +  K++++  HSERLA
Sbjct: 899  YFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPD-TRSVMHDVDEGEKENAVCHHSERLA 957

Query: 552  IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
            IA G+++  PG PIR+FKNLRVC DCH  TK I++I + EI+ RD  RFHHFKDG CSC 
Sbjct: 958  IAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCG 1017

Query: 612  DYW 614
            DYW
Sbjct: 1018 DYW 1020



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 194/387 (50%), Gaps = 16/387 (4%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRV 89
           ++ +  L+ CKS S L   ++IH +A++  L      + + + I++ +A    +  A  V
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFD---VNVANCILNMYAKCGSIHEAREV 301

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++E  +  +W  +I   A    ++  A  +FQ+M ++G V+P++ T+   L A +   
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEI-AFEIFQKMQQEG-VVPNRITYINVLNAFSGPA 359

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A   GK  H+HI   G  SD+ +  +L+  YA CG      +VF+ ++ R L++WN MI 
Sbjct: 360 ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
              + G ++ A +++ +MQ     P+  T+  + +AC     L  G   H+ +++     
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK---DG 476

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            + D+ V N+LI MY +CGS+  AR +F  M ++D+ SW ++I G A  G    AL  F 
Sbjct: 477 FMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQ 536

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +  +    PN +T+  +L+AC+    +  GR     +I E  +         LV++ + 
Sbjct: 537 DM-QQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSM 594

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G++ +A  +   M  + D V + +++
Sbjct: 595 CGSVKDARQVFDRMTQR-DIVAYNAMI 620



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 196/399 (49%), Gaps = 27/399 (6%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL----IYSRIIHFASFADLDYAF 87
           ++  +L    E K +   +++H   +      QH T+L    + + I  +     ++ A 
Sbjct: 143 DYMKMLKRCIEVKDLVAGREVHEHII------QHCTVLDQYTVNALINMYIQCGSIEEAR 196

Query: 88  RVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           +V+ ++ +      +WN ++    +      +A+ L + M + G  L    T    L +C
Sbjct: 197 QVWNKLNHTERTVHSWNAMVVGYVQ-YGYIEEALKLLREMQQHGLALGRATTMRL-LSSC 254

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
               A   G++ H    K  L+ DV + N +++ YA CG +  A +VFD M  +S+VSW 
Sbjct: 255 KSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWT 314

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           ++I  +   G  + A ++F++MQ     P+  T+ ++ +A +G A L  G   H++IL  
Sbjct: 315 IIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNA 374

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              S   D+ V  +L+ MY KCGS    RQVFE +  RDL +WN++I G A  G  E A 
Sbjct: 375 GHES---DLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEAS 431

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE---YNITPVLEHYGC 381
           + + ++   E   PN IT+V +L+AC +   +  GR+    ++ +   ++I+        
Sbjct: 432 EIYHQM-QREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV----QNA 486

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           L+ + AR G+I +A  L+ N  ++ D + W +++    K
Sbjct: 487 LISMYARCGSIKDA-RLLFNKMVRKDIISWTAMIGGLAK 524


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 341/588 (57%), Gaps = 15/588 (2%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAF 87
           +++N++SLL S    K++   KQ+HAQ             +I +++++     D L  A 
Sbjct: 74  TYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFD---TVIATKLVNLYCVCDSLSSAR 130

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            +F +I   N F WN LIR  A +      A+ L+ +M + G ++PD  TFPF LKACA 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWN-GPYEAAVQLYYQMFDYG-LVPDNFTFPFVLKACAA 188

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L A   G++ H H+ + G   DV++  +LI  YA CG +  A +VFD +L R  V WN M
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           + A+ Q G  D+ L L   M +    P   T  +  SA A  A L  G   H    R   
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQ-- 306

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               +   V  +L+DMY KCGS+ +AR +FE +  + + SWN++I G+A+HG A  AL  
Sbjct: 307 -EFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDL 365

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+ +       P+ ITFVGVLSAC+H G++ EG  +F+ MI +Y I P ++HY C+VDLL
Sbjct: 366 FEEM--NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLL 423

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
             +G +DEA +L+  M + PD+ +W +LL++C K HA+V L E   +++IE E    +G 
Sbjct: 424 GHSGRLDEAYNLIMQMKVLPDSGVWGALLNSC-KIHANVELGEIALERLIELEPDD-AGN 481

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YV+LS +YA A +W  V  +RKLMTD+ + K   CS IE+    H F +GDTSHP + +I
Sbjct: 482 YVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEI 541

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L+ +   +K  GY+P  + +   D  DD K + +  HSERLAIA G+++  PG  + 
Sbjct: 542 YSELERVGGLMKEAGYSPS-TGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLL 600

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + KNLR+C+DCH   K IS+I   EI VRD  R+HHFKDG CSC DYW
Sbjct: 601 ITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 9/291 (3%)

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           E   + P    +   L++C    A   GKQ HA +   G   D  I   L++ Y  C  L
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC 245
             A  +FD + + ++  WNV+I  +   G +++A++L+ +M      PD +TF  +  AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L+ +  G   H ++++        DV V  +LIDMY KCG +  AR+VF+ +  RD  
Sbjct: 187 AALSAIEHGREIHEHVVQ---TGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV 243

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
            WNS++  ++ +G  +A L     +V+     P   T V  +SA      + +GR+   +
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVL-TGLRPTEATLVTAISASADNAALPQGRELHGL 302

Query: 366 MI-NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               E+     ++    LVD+ A+ G++  A +L   + +K   V W +++
Sbjct: 303 SWRQEFESHDKVK--TALVDMYAKCGSVRVARNLFERLGVK-RVVSWNAMI 350


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 351/611 (57%), Gaps = 25/611 (4%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           P      S S  N  + E  +      L  + +CKS+ + KQ+H Q L+  L        
Sbjct: 15  PSKDLPQSSSELNLKQKEQEY------LCLVKKCKSLEEFKQVHVQILKFGLFLDS---F 65

Query: 70  IYSRIIHFASFAD---LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
             S ++   + +D   +DYA  +F Q++ P +F +NT+IR    +++ +  AI L+  M+
Sbjct: 66  CSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFE-NAIYLYNDML 124

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
            Q  V PD  T+P  LKACA L    +G Q H H+FK GL  DVY+ NSLI+ Y  C  +
Sbjct: 125 -QREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDI 183

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSA 244
           +++  +F  M ++S+ SW+ +I A      +   L LF  M  +  +  +     ++ SA
Sbjct: 184 EMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSA 243

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  L    LG  AH  +L++       +V V  SL+DMY KCGSL     +F++M +++ 
Sbjct: 244 CTHLGAFHLGRCAHGSLLKNITE---LNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQ 300

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            S++ II G  LHG    AL+ F  +V EE   P+ +T+V VLSAC+H G+V EG D FD
Sbjct: 301 LSYSVIISGLGLHGYGRQALQIFSEMV-EEGLEPDDVTYVSVLSACSHSGLVDEGLDLFD 359

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M  EY I P ++HYGC+VDL  RAG ++EA  LV +MP+K + V+WRSLL A CK H +
Sbjct: 360 KMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSA-CKVHDN 418

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           + L E  A+ +        S  Y++LS +YA A++W +   +R  M ++G+ + PG S +
Sbjct: 419 LKLGEIAAENLFRLSSHNPSD-YLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLV 477

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSL 543
           E+    ++F + D S+ ++  IY  +  ++ +L+  GY PD SQ  + VDE + G++  L
Sbjct: 478 EVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGER--L 535

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
           + HS++LAIA  +++   G  IR+ +NLR+C DCH  TKL+S I+  EI VRDR RFHHF
Sbjct: 536 KGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHF 595

Query: 604 KDGSCSCMDYW 614
           KDG+CSC DYW
Sbjct: 596 KDGNCSCRDYW 606


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 345/586 (58%), Gaps = 16/586 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVF 90
           +++L+ L  C ++++LK+I A  +   L Q H    I + I++F + +    L YA  +F
Sbjct: 10  NAILTVLQGCNNLTRLKKIQAHVIVNGL-QNHPA--ISNSILNFCAVSISGSLPYAQHLF 66

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             I NP +  WN++IR  A+S  +  QAI  + RM+      PD  TF F LKAC  + A
Sbjct: 67  RHILNPQTQAWNSIIRGFAQS-PSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKA 125

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             + ++ H  I + G   DV +   L+  Y   G +++A  VFDNM ER LV+WN MI  
Sbjct: 126 LKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISC 185

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q G    AL+++  M+      DG+T   + S+C+ +  L++G+  H       +  L
Sbjct: 186 YSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIA---SEKGL 242

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           + +V V N+LIDMY KCGSLD A +VF  MP RD  +WNS+I+GF +HG  + A+ +F++
Sbjct: 243 LRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQ 301

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++ E    PNSI F+G+L  C+H+G+V EG ++F  M +++N+ P ++HYGC+VD+  RA
Sbjct: 302 ML-EAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRA 360

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G +++AL ++ + P + D V+WR LL +  K H +VV+ E +A + +   G + +G  VL
Sbjct: 361 GKLEKALEIIGDSPWQDDPVLWRILLSSS-KIHKNVVIGE-IAMRNLSQLGAVNAGDCVL 418

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L+ +YA A     V  +RKL+  +G+   PG S IE+    H F   D SHP ++ IY  
Sbjct: 419 LATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQK 478

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDEL-DDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           L+ +  K    GY  D SQ        ++  +SS   HSE+LAIA G+     G  +R+ 
Sbjct: 479 LEEVTHKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIV 538

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC+DCHE TK +SR FN +IIVRDR RFHHFK G CSC DYW
Sbjct: 539 KNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/525 (42%), Positives = 316/525 (60%), Gaps = 16/525 (3%)

Query: 97  NSFTWNTLIRACARSV--DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ- 153
           ++F  NTLIRA A S     + +A   F  M+ +G V+P+K TFPF LKACA L      
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLML-RGAVVPNKFTFPFLLKACAALPGSPDV 145

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNMLERSLVSWNVMIDA 210
           G QAHA   K G  +D Y++N+LIH Y SC   G L  A  VFD M + S V+W+ MI  
Sbjct: 146 GLQAHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204

Query: 211 FVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +V+ G    A++LFR MQ    + D  T   + +A   L  L L  W   ++ R     +
Sbjct: 205 YVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE---GI 261

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              V + N+LID   KCG +D A  VFE M +R + SW S+I   A+ GR + A++ F+ 
Sbjct: 262 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           + V     P+ + F+GVL+AC+H GMV EG  YFD M  EY I P +EHYGC+VD+  RA
Sbjct: 322 MKVA-GVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRA 380

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G ++ A+  V  MP++P+ VIWRSL+ AC + H  + L E + + ++  E       Y++
Sbjct: 381 GMVERAMEFVRTMPIQPNPVIWRSLVSAC-RAHGRLELGESITRSLLH-EYPAHEANYIM 438

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS V+A  +RW +   +R+ M+ +G+ K PGCS +E+DG  HEF AGD SHPQ K IY  
Sbjct: 439 LSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRM 498

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           ++ +  +L+  G+    S+  ++D  ++ K+ +L+ HSE+LAIA  +L   PG  +RV K
Sbjct: 499 VEEMARELRRVGHIAATSEV-LLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVK 557

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH   K IS+++  EI+VRDR+RFH FKDGSCSC D+W
Sbjct: 558 NLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 345/603 (57%), Gaps = 17/603 (2%)

Query: 17   SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSR 73
            ++ +F   +NE    ++ +  S L+ CK+   L   KQIH +   + L  Q    L  + 
Sbjct: 516  AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL--QLDVNLGNAL 573

Query: 74   IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA-RSVDAKPQAIVLFQRMIEQGNVL 132
            I  +     L  A  VF+ +++ +  +W  +I  CA +  D K  AI LF +M  +G   
Sbjct: 574  INMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK--AIELFWQMQNEG-FR 630

Query: 133  PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
            P K TF   LK C       +GK+  A+I   G   D  + N+LI  Y+  G +  A +V
Sbjct: 631  PVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREV 690

Query: 193  FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
            FD M  R +VSWN +I  + Q G   +A++   +MQ     P+ ++F S+ +AC+  + L
Sbjct: 691  FDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSAL 750

Query: 252  SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
              G   HA I++     L  DV V  +LI MY KCGS   A++VF+++ ++++ +WN++I
Sbjct: 751  EEGKRVHAEIVKR---KLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMI 807

Query: 312  LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
              +A HG A  AL +F+  + +E   P+  TF  +LSACNH G+V EG   F  M +EY 
Sbjct: 808  NAYAQHGLASKALGFFN-CMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYG 866

Query: 372  ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            + P +EHYGCLV LL RA    EA  L++ MP  PDA +W +LL AC + H ++ L+E  
Sbjct: 867  VLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGAC-RIHGNIALAEHA 925

Query: 432  AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
            A   ++        VY+LLS VYA+A RW+DV  +R++M  +G+ KEPG S IE+D I H
Sbjct: 926  ANNALKLNAR-NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIH 984

Query: 492  EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            EF A D SHP+T +IY  L  +  +++  GY PD +Q  + D     +++SL  HSERLA
Sbjct: 985  EFIAADRSHPETAEIYAELKRLSVEMEEAGYFPD-TQHVLHDLGKAHQETSLCTHSERLA 1043

Query: 552  IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
            IA G++   PG PIR+FKNLR+C DCH  +K IS++   EII RD  RFH FK+G CSC 
Sbjct: 1044 IAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCE 1103

Query: 612  DYW 614
            DYW
Sbjct: 1104 DYW 1106



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 203/410 (49%), Gaps = 21/410 (5%)

Query: 16  HSHSI-----FNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKT 67
           H H++     +   R++G   N ++ LS L  C   K++   K IH+             
Sbjct: 308 HGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG--HSSDV 365

Query: 68  LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            +  + I  +A   DL  A  +FY +   +  +WN +I   AR  D + +A+ L+++M  
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED-RGEAMRLYKQMQS 424

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +G V P + TF   L ACA   A++ GK  H  I + G+ S+ ++ N+L++ Y  CG L 
Sbjct: 425 EG-VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLM 483

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACA 246
            A  VF+    R ++SWN MI    Q G +++A KLF+ MQ    EPD  TF S+ S C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
               L LG   H  I    +  L  DV + N+LI+MY +CGSL  AR VF S+  RD+ S
Sbjct: 544 NPEALELGKQIHGRI---TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS 600

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W ++I G A  G    A++ F ++   E F P   TF  +L  C     + EG+     +
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQM-QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659

Query: 367 INE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +N  Y +   + +   L+   +++G++ +A  +   MP + D V W  ++
Sbjct: 660 LNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKII 706



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 203/408 (49%), Gaps = 30/408 (7%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   +N G   N  + +S LT C S ++L   K+IH+Q ++     Q    +  S +  
Sbjct: 115 LFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGY--QRDPRVQNSLLSM 172

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL  A +VF  I   +  ++NT++   A+    K + + LF +M  +G + PDK 
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVK-ECLGLFGQMSSEG-ISPDKV 230

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L A        +GK+ H    + GL SD+ +  +L+     CG +D A + F   
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGT 290

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY-----TFQSITSACAGLATL 251
            +R +V +N +I A  Q G    A + + RM+     DG      T+ SI +AC+    L
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRMR----SDGVALNRTTYLSILNACSTSKAL 346

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             G   H++I     HS  +DV + N+LI MY +CG L  AR++F +MPKRDL SWN+II
Sbjct: 347 EAGKLIHSHISED-GHS--SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAII 403

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+A       A++ + ++   E   P  +TF+ +LSAC +    ++G+     MI+E  
Sbjct: 404 AGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLLSACANSSAYADGK-----MIHEDI 457

Query: 372 ITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +   ++  G     L+++  R G++ EA ++      + D + W S++
Sbjct: 458 LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMI 504



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 185/390 (47%), Gaps = 13/390 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +LL + T  + + + K+IHAQ +   + P    + L+ +  +   S  D   A +VF ++
Sbjct: 32  ALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD---AHQVFKEM 88

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +  +WN+LI +C      K +A  LF+ M   G  +P+K T+   L AC        
Sbjct: 89  PRRDVISWNSLI-SCYAQQGFKKKAFQLFEEMQNAG-FIPNKITYISILTACYSPAELEN 146

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK+ H+ I K G   D  + NSL+  Y  CG L  A +VF  +  R +VS+N M+  + Q
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                  L LF +M      PD  T+ ++  A    + L  G   H   +   +  L +D
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV---EEGLNSD 263

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + V  +L+ M  +CG +D A+Q F+    RD+  +N++I   A HG    A + + R+  
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRM-R 322

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +  + N  T++ +L+AC+    +  G+      I+E   +  ++    L+ + AR G++
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDL 381

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
            +A  L   MP K D + W +++    ++ 
Sbjct: 382 PKARELFYTMP-KRDLISWNAIIAGYARRE 410



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 7/285 (2%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++ T+   L+ C       + K+ HA + +  +  D++++N LI+ Y  C  +  A++VF
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLS 252
             M  R ++SWN +I  + Q G    A +LF  MQ   F P+  T+ SI +AC   A L 
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H+ I++        D  V NSL+ MY KCG L  ARQVF  +  RD+ S+N+++ 
Sbjct: 146 NGKKIHSQIIK---AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            +A     +  L  F ++   E  SP+ +T++ +L A     M+ EG+    + + E  +
Sbjct: 203 LYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GL 260

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              +     LV +  R G++D A         + D V++ +L+ A
Sbjct: 261 NSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAA 304


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 348/603 (57%), Gaps = 22/603 (3%)

Query: 19  SIFNNNRNEG---SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII 75
           +IF   + EG       + SLL++     +   +K++H  A+   L      L + S  +
Sbjct: 321 TIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSD---LRVGSAFV 377

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           H +     +D A  +F ++   N  TWN +I   A+    + +A+ LF +M  +G   PD
Sbjct: 378 HMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGR-EALSLFLQMRREG-FFPD 435

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
             TF   L A     A    K+ H++    GLV D+ + N+L+H YA CG+   A +VFD
Sbjct: 436 ATTFVNILSANVGEEALEWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFD 494

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATL 251
           +M+ER++ +W VMI    Q G    A  LF  +Q+L E   PD  T+ SI SACA    L
Sbjct: 495 DMVERNVTTWTVMISGLAQHGCGHEAFSLF--LQMLREGIVPDATTYVSILSACASTGAL 552

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                 H++ +   +  LV+D+ V N+L+ MY KCGS+D AR+VF+ M +RD+ SW  +I
Sbjct: 553 EWVKEVHSHAV---NAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMI 609

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G A HGR   AL  F ++ +E  F PN  +FV VLSAC+H G+V EGR  F  +  +Y 
Sbjct: 610 GGLAQHGRGLDALDLFVKMKLE-GFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYG 668

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P +EHY C+VDLL RAG ++EA H + NMP++P    W +LL AC   + ++ ++E  
Sbjct: 669 IEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACV-TYGNLEMAEFA 727

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           AK+ ++ +    S  YVLLS +YA+   W    LVR +M  +G+ KEPG S IE+D   H
Sbjct: 728 AKERLKLKPKSAS-TYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIH 786

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F  GDTSHP++K+IY  L  + ++LK+ GY PD ++  + +   + K+ +L  HSE+LA
Sbjct: 787 SFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPD-TRLVLRNTDQEYKEQALCSHSEKLA 845

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           I  G+++     PIRV+KNLRVC DCH  TK IS++   EI+ RD  RFHHFKDG CSC 
Sbjct: 846 IVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCG 905

Query: 612 DYW 614
           DYW
Sbjct: 906 DYW 908



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 183/373 (49%), Gaps = 29/373 (7%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+ ++ +M  +G   P++ T+   LKAC    +   GK+ HAHI + G  SDV +  +L+
Sbjct: 14  AMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALV 72

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236
           + Y  CG +D A  +FD M+ER+++SW VMI     +G    A   F +MQ   F P+ Y
Sbjct: 73  NMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSY 132

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T+ SI +A A    L      H++ +   +  L  D+ V N+L+ MY K GS+D AR VF
Sbjct: 133 TYVSILNANASAGALEWVKEVHSHAV---NAGLALDLRVGNALVHMYAKSGSIDDARVVF 189

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS-PNSITFVGVLSACNHRGM 355
           + M +RD+ SW  +I G A HGR + A   F  L +E     PN  T++ +L+A     +
Sbjct: 190 DGMVERDIFSWTVMIGGLAQHGRGQEAFSLF--LQMERGGCLPNLTTYLSILNAS---AI 244

Query: 356 VSEGRDYFDVMINEY----NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
            S G   +   ++++         L     L+ + A+ G+ID+A  LV +     D + W
Sbjct: 245 TSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA-RLVFDGMCDRDVISW 303

Query: 412 RSLL-----DACCKKHASVVLSEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGL 465
            +++     + C  +  ++ L        ++ EG +  S  Y+ L   + S   W  V  
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLK-------MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 466 VRKLMTDKGVTKE 478
           V K   + G+  +
Sbjct: 357 VHKHAVEVGLVSD 369



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 113/210 (53%), Gaps = 7/210 (3%)

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  + ++G  + A+K++ +M+    +P+  T+ SI  AC    +L  G   HA+I++  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQ-- 58

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                +DV V  +L++MY KCGS+D A+ +F+ M +R++ SW  +I G A +GR + A  
Sbjct: 59  -SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFH 117

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F ++   E F PNS T+V +L+A    G +   ++     +N   +   L     LV +
Sbjct: 118 RFLQM-QREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHM 175

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            A++G+ID+A  +   M ++ D   W  ++
Sbjct: 176 YAKSGSIDDARVVFDGM-VERDIFSWTVMI 204


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 353/622 (56%), Gaps = 48/622 (7%)

Query: 32  NHSSLLSSLTECK---SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           NH   +  L  C    SM QL +I AQ + + +P     ++    I   +S  +L ++  
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79

Query: 89  VF-YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACA 146
           +F + +  PN F +N L++A ++  +A    I  F   +   N   PD++TF   LKACA
Sbjct: 80  IFNHFLSFPNIFAYNALLKAFSQH-NAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY----ASC------------------- 183
            L    +G++ H  + K G  S++++ NSL+  Y     +C                   
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNT 198

Query: 184 --------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEP 233
                   G +D A  VFD M+E++LVSW+ MI  + +  ++  A++LFR+MQ      P
Sbjct: 199 LISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAP 258

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  T  S+ SACA L  L LG W H +I R+    +   + + N+L DMY KCG +  A+
Sbjct: 259 NDVTLVSVLSACAHLGALDLGKWIHRFIRRN---KIEVGLFLGNALADMYAKCGCVLEAK 315

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            VF  M +RD+ SW+ II+G A++G A  A  +F  ++ E+   PN I+F+G+L+AC H 
Sbjct: 316 GVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMI-EDGLEPNDISFMGLLTACTHA 374

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V +G +YFD+M   Y ITP +EHYGC+VDLL+RAG +D+A  L+++MPM+P+ ++W +
Sbjct: 375 GLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGA 434

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL   C+ +      E V  +++E +    SG  V L+ VYAS  R +D    R  M D 
Sbjct: 435 LLGG-CRIYKDAERGERVVWRILELDSN-HSGSLVYLANVYASMGRLDDAASCRLRMRDN 492

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-V 532
              K PGCS IEI+   +EFF GD+SHPQ+ +IY  +  +  K+K  GY P        +
Sbjct: 493 KSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNI 552

Query: 533 DELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEI 592
           DE  + K+ +L  HSE+LA+A G++N   G  IR+ KNLRVC DCH+  K+IS+I   EI
Sbjct: 553 DE--EEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREI 610

Query: 593 IVRDRARFHHFKDGSCSCMDYW 614
           +VRDR+RFHHFKDG CSC DYW
Sbjct: 611 VVRDRSRFHHFKDGKCSCNDYW 632


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/605 (39%), Positives = 347/605 (57%), Gaps = 21/605 (3%)

Query: 17   SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSR 73
            ++ +F   + EG   +  +  S L  CK+   L   +QIH   + + L  Q    L  + 
Sbjct: 571  AYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGL--QLDVNLGNAL 628

Query: 74   IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
            I  +     L  A+ VF+ + + N  +W  +I   A   + + +A  LF +M   G   P
Sbjct: 629  INMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDR-KAFELFWQMQNDG-FKP 686

Query: 134  DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
             K TF   LKAC       +GK+  AHI   G   D  + N+LI  Y+  G +  A KVF
Sbjct: 687  VKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVF 746

Query: 194  DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ----ILFEPDGYTFQSITSACAGLA 249
            D M  R ++SWN MI  + Q G   +AL+   +MQ    +L   + ++F SI +AC+  +
Sbjct: 747  DKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVL---NKFSFVSILNACSSFS 803

Query: 250  TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
             L  G   HA I++     +  DV V  +LI MY KCGSL+ A++VF++  ++++ +WN+
Sbjct: 804  ALEEGKRVHAEIVKR---KMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNA 860

Query: 310  IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
            +I  +A HG A  AL +F+  + +E   P+  TF  +LSACNH G+V EG   F  + ++
Sbjct: 861  MINAYAQHGLASKALDFFN-CMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQ 919

Query: 370  YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
            + ++P +EHYGCLV LL RAG   EA  L++ MP  PDA +W +LL AC + H +V L+E
Sbjct: 920  HGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGAC-RIHGNVALAE 978

Query: 430  EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
              A   ++        VYVLLS VYA+A RW+DV  +R++M  +G+ KEPG S IE+D I
Sbjct: 979  HAANNALKLNAR-NPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 1037

Query: 490  AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
             HEF A D SHP+T +IY  L  +  +++  GY+PD +Q  + +   + +++SL  HSER
Sbjct: 1038 IHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPD-TQYVLHNLDKEHQETSLCTHSER 1096

Query: 550  LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
            LAIA G+L   PG PIR+FKNLR+C DCH  +K IS++   EII RD  RFH FK+G CS
Sbjct: 1097 LAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCS 1156

Query: 610  CMDYW 614
            C D+W
Sbjct: 1157 CEDFW 1161



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 192/382 (50%), Gaps = 11/382 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LL + T    + + K+IH  A+   L    +     + +  F    D+  A +      
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATM--FVRCGDVAGAKQALEAFA 346

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + +   +N LI A A+    + +A   + +M   G V+ ++ T+   L AC+   A   G
Sbjct: 347 DRDVVVYNALIAALAQHGHYE-EAFEQYYQMRSDGVVM-NRTTYLSVLNACSTSKALGAG 404

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H+HI + G  SDV I NSLI  YA CG L  A ++F+ M +R L+SWN +I  + + 
Sbjct: 405 ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARR 464

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
            +   A+KL+++MQ    +P   TF  + SAC   +  S G   H  ILR     + ++ 
Sbjct: 465 EDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR---SGIKSNG 521

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            + N+L++MY +CGS+  A+ VFE    RD+ SWNS+I G A HG  EAA K F  +  +
Sbjct: 522 HLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEM-KK 580

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           E   P+ ITF  VL  C +   +  GR    ++I E  +   +     L+++  R G++ 
Sbjct: 581 EGLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQ 639

Query: 394 EALHLVSNMPMKPDAVIWRSLL 415
           +A  +  ++  + + + W +++
Sbjct: 640 DAYEVFHSLRHR-NVMSWTAMI 660



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 13/389 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           L+ + T  +S+++ K+IHAQ +   + P    + L+ +  +   S +D   A +VF ++ 
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD---AHQVFLKMP 144

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WN+LI +C      K +A  LF+ M   G  +P K T+   L AC        G
Sbjct: 145 RRDVISWNSLI-SCYAQQGFKKKAFQLFEEMQTAG-FIPSKITYISILTACCSPAELEYG 202

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K+ H+ I + G   D  + NSL++ Y  C  L  A +VF  +  R +VS+N M+  + Q 
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQK 262

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
              +  + LF +M      PD  T+ ++  A    + L  G   H   +   +  L +D+
Sbjct: 263 AYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAV---NEGLNSDI 319

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V  +L  M+ +CG +  A+Q  E+   RD+  +N++I   A HG  E A + + ++   
Sbjct: 320 RVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQM-RS 378

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           +    N  T++ VL+AC+    +  G +     I+E   +  ++    L+ + AR G++ 
Sbjct: 379 DGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLP 437

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKH 422
            A  L + MP K D + W +++    ++ 
Sbjct: 438 RARELFNTMP-KRDLISWNAIIAGYARRE 465


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 336/559 (60%), Gaps = 19/559 (3%)

Query: 66  KTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
           KT    + +  +A    +D +  +F    + +  +WNT+I + ++S D   +A+  F+ M
Sbjct: 147 KTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQS-DRFSEALAFFRLM 205

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCG 184
           + +G  L D  T    L AC++L     GK+ HA++ +   L+ + ++ ++L+  Y +C 
Sbjct: 206 VLEGVEL-DGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 264

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSIT 242
            ++   +VFD++L R +  WN MI  + + G  + AL LF  M  +    P+  T  S+ 
Sbjct: 265 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 324

Query: 243 SACA-GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            AC   LA ++ G   HAY +R+    L +D+ V ++L+DMY KCG L+++R+VF  MP 
Sbjct: 325 PACVHSLAAIAKGKEIHAYAIRNM---LASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 381

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEES----FSPNSITFVGVLSACNHRGMVS 357
           +++ +WN +I+   +HG+ E AL+ F  +V E        PN +TF+ V +AC+H G++S
Sbjct: 382 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 441

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLD 416
           EG + F  M +++ + P  +HY C+VDLL RAG ++EA  LV+ MP + D V  W SLL 
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 501

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           AC + H +V L E  AK ++  E  + S  YVLLS +Y+SA  WN    VRK M   GV 
Sbjct: 502 AC-RIHQNVELGEVAAKNLLHLEPNVASH-YVLLSNIYSSAGLWNKAMEVRKNMRQMGVK 559

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDEL 535
           KEPGCS IE     H+F AGD SHPQ++Q++GFL+ + EK++  GY PD S     VDE 
Sbjct: 560 KEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDE- 618

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
            D K++ L  HSE+LAIA GILN  PG  IRV KNLRVC DCH  TK IS+I   EIIVR
Sbjct: 619 -DEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVR 677

Query: 596 DRARFHHFKDGSCSCMDYW 614
           D  RFHHFK+G+CSC DYW
Sbjct: 678 DVRRFHHFKEGTCSCGDYW 696



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 171/346 (49%), Gaps = 37/346 (10%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +W   +R+  RS D + +AI  +  M   G   PD   FP  LKA + L     G+Q HA
Sbjct: 59  SWVDALRSRTRSNDFR-EAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQIHA 116

Query: 160 HIFKRGLVSD---------------------VYINNSLIHFYASCGHLDLANKVFDNMLE 198
              K G  S                       + NN+L+  YA  G +D +  +F++ ++
Sbjct: 117 AAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVD 176

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           R +VSWN MI +F Q   F  AL  FR M +   E DG T  S+  AC+ L  L +G   
Sbjct: 177 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEI 236

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HAY+LR+ D  L+ +  V ++L+DMYC C  ++  R+VF+ +  R +  WN++I G+A +
Sbjct: 237 HAYVLRNND--LIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR-GMVSEGRDYFDVMINEYNITPVL 376
           G  E AL  F  ++      PN+ T   V+ AC H    +++G++     I+ Y I  +L
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKE-----IHAYAIRNML 349

Query: 377 EH----YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
                    LVD+ A+ G ++ +  + + MP K + + W  L+ AC
Sbjct: 350 ASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMAC 394


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/525 (42%), Positives = 315/525 (60%), Gaps = 16/525 (3%)

Query: 97  NSFTWNTLIRACARSV--DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ- 153
           ++F  NTLIRA A S     + +A   F  M+ +G V+P+K TFPF LKACA L      
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLML-RGAVVPNKFTFPFLLKACAALPGSPDV 145

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNMLERSLVSWNVMIDA 210
           G QAHA   K G  +D Y++N+LIH Y SC   G L  A  VFD M + S V+W+ MI  
Sbjct: 146 GLQAHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204

Query: 211 FVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +V+ G    A+ LFR MQ    + D  T   + +A   L  L L  W   ++ R     +
Sbjct: 205 YVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE---GI 261

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              V + N+LID   KCG +D A  VFE M +R + SW S+I   A+ GR + A++ F+ 
Sbjct: 262 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           + V     P+ + F+GVL+AC+H GMV EG  YFD M  EY I P +EHYGC+VD+  RA
Sbjct: 322 MKVA-GVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRA 380

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G ++ A+  V  MP++P+ VIWRSL+ AC + H  + L E + + ++  E       Y++
Sbjct: 381 GMVERAMEFVRTMPIQPNPVIWRSLVSAC-RAHGRLELGESITRSLLH-EYPAHEANYIM 438

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS V+A  +RW +   +R+ M+ +G+ K PGCS +E+DG  HEF AGD SHPQ K IY  
Sbjct: 439 LSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRM 498

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           ++ +  +L+  G+    S+  ++D  ++ K+ +L+ HSE+LAIA  +L   PG  +RV K
Sbjct: 499 VEEMARELRRVGHIAATSEV-LLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVK 557

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH   K IS+++  EI+VRDR+RFH FKDGSCSC D+W
Sbjct: 558 NLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 348/588 (59%), Gaps = 22/588 (3%)

Query: 34   SSLLSSLTECKSMSQL---KQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYA 86
            ++L++S+  C ++  L   + +H Q ++    ++   + TLL +YS+        +L+ A
Sbjct: 655  ATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKC------GNLNDA 708

Query: 87   FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
             + F ++      +W +LI A  R       AI LF  M  +G V PD ++    L ACA
Sbjct: 709  IQAFEKMGQKTVVSWTSLIAAYVRE-GLYDDAIRLFYEMESKG-VSPDVYSMTSVLHACA 766

Query: 147  YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
               +  +G+  H +I K  +   + ++N+L+  YA CG ++ A  VF  +  + +VSWN 
Sbjct: 767  CGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNT 826

Query: 207  MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
            MI  + +    + ALKLF  MQ    PDG T   +  AC  LA L +G   H  ILR+  
Sbjct: 827  MIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRN-- 884

Query: 267  HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                +++ V N+LIDMY KCGSL  AR +F+ +P++DL +W  +I G  +HG    A+  
Sbjct: 885  -GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIAT 943

Query: 327  FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
            F ++ +     P+ ITF  +L AC+H G+++EG  +F+ MI+E N+ P LEHY C+VDLL
Sbjct: 944  FQKMRIA-GIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLL 1002

Query: 387  ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            AR GN+ +A +L+  MP+KPDA IW +LL  C + H  V L+E+VA+ V E E    +G 
Sbjct: 1003 ARTGNLSKAYNLIETMPIKPDATIWGALLCGC-RIHHDVELAEKVAEHVFELEPDN-AGY 1060

Query: 447  YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            YVLL+ +YA A +W +V  +R+ +  +G+ K PGCS IE+ G    F + DT+HPQ K I
Sbjct: 1061 YVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSI 1120

Query: 507  YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
            +  L+ +  K+K+ G++P   + A+++  D  K+ +L  HSE+LA+A GILNL  G  IR
Sbjct: 1121 FSLLNNLRIKMKNEGHSPKM-RYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIR 1179

Query: 567  VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            V KNLRVC DCHE+ K +S+    EII+RD  RFHHFKDG CSC D+W
Sbjct: 1180 VAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 205/395 (51%), Gaps = 12/395 (3%)

Query: 23  NNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD 82
           + ++E   N +SS+L    E K + + K +H+      +P +   +L    +  + S   
Sbjct: 444 SQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIE--GVLGAKLVFMYVSCGA 501

Query: 83  LDYAFRVFYQIENPNS-FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           L    R+F  I + N  F WN ++   A+  D + ++I LF++M + G +  + +TF   
Sbjct: 502 LREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYR-ESIYLFKKMQKLG-ITGNSYTFSCI 559

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           LK  A L    + K+ H  ++K G  S   + NSLI  Y   G +D A+K+FD + +R +
Sbjct: 560 LKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDV 619

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VSWN MI   V  G   SAL+ F +M IL    D  T  +  +ACA + +LSLG   H  
Sbjct: 620 VSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQ 679

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
            ++ C      +V+ NN+L+DMY KCG+L+ A Q FE M ++ + SW S+I  +   G  
Sbjct: 680 GVKAC---FSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLY 736

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           + A++ F  +   +  SP+  +   VL AC     + +GRD  +  I + N+   L    
Sbjct: 737 DDAIRLFYEM-ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN-YIRKNNMALCLPVSN 794

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L+D+ A+ G+++EA  + S +P+K D V W +++
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMI 828



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 194/393 (49%), Gaps = 14/393 (3%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF 87
           G+    S +L        + + K+IH    +      +   ++ S I  +    ++D A 
Sbjct: 551 GNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNT--VVNSLIATYFKSGEVDSAH 608

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           ++F ++ + +  +WN++I  C  +  +        Q +I +  V  D  T   ++ ACA 
Sbjct: 609 KLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGV--DLATLVNSVAACAN 666

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           + + S G+  H    K     +V  NN+L+  Y+ CG+L+ A + F+ M ++++VSW  +
Sbjct: 667 VGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSL 726

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I A+V+ G +D A++LF  M+     PD Y+  S+  ACA   +L  G   H YI +   
Sbjct: 727 IAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK--- 783

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           +++   + V+N+L+DMY KCGS++ A  VF  +P +D+ SWN++I G++ +     ALK 
Sbjct: 784 NNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKL 843

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NEYNITPVLEHYGCLVDL 385
           F  +  E    P+ IT   +L AC     +  GR     ++ N Y  +  L     L+D+
Sbjct: 844 FAEMQKES--RPDGITMACLLPACGSLAALEIGRGIHGCILRNGY--SSELHVANALIDM 899

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
             + G++  A  L   +P K D + W  ++  C
Sbjct: 900 YVKCGSLVHARLLFDMIPEK-DLITWTVMISGC 931


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/594 (39%), Positives = 340/594 (57%), Gaps = 15/594 (2%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           R+EG   N+ +    L  C  +  L+   +IH   ++          +  S +  +A   
Sbjct: 104 RSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGF--DCDVFVKTSLVCLYAKCG 161

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            L+ A +VF  I + N  +W  +I      V    +AI +F+R++E  N+ PD  T    
Sbjct: 162 YLEDAHKVFDDIPDKNVVSWTAIISGYI-GVGKFREAIDMFRRLLEM-NLAPDSFTIVRV 219

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L AC  L   + G+  H  I + G+V +V++  SL+  YA CG+++ A  VFD M E+ +
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           VSW  MI  +   G    A+ LF +MQ    +PD YT   + SACA L  L LG W    
Sbjct: 280 VSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGL 339

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           + R+     + + ++  +LID+Y KCGS+  A +VF+ M ++D   WN+II G A++G  
Sbjct: 340 VDRN---EFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           + +   F + V +    P+  TF+G+L  C H G+V EGR YF+ M   +++TP +EHYG
Sbjct: 397 KISFGLFGQ-VEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYG 455

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VDLL RAG +DEA  L+ NMPM+ +A++W +LL A C+ H    L+E   KQ+IE E 
Sbjct: 456 CMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA-CRIHRDTQLAELALKQLIELE- 513

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              SG YVLLS +Y++  +W++   VR  M +K + K PGCS IE+DGI HEF  GD  H
Sbjct: 514 PWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYH 573

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           P +++IY  LD + +K+K  GY P  +   + D  ++ K+  L  HSE+LAIA G+++  
Sbjct: 574 PLSEKIYAKLDELTKKMKVAGYVPT-TDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISAT 632

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P   IRV KNLRVC DCH   KLIS I   EI VRD  RFH F++GSCSC DYW
Sbjct: 633 PTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 199/341 (58%), Gaps = 13/341 (3%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F+D +Y   +F+QI+ PN F WNT+IR    S D    AI  +  M  +G  LP+  TFP
Sbjct: 59  FSDTNYTRFLFHQIKQPNIFLWNTMIRGLV-SNDCFDDAIEFYGLMRSEG-FLPNNFTFP 116

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           F LKACA L     G + H  + K G   DV++  SL+  YA CG+L+ A+KVFD++ ++
Sbjct: 117 FVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDK 176

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           ++VSW  +I  ++  G+F  A+ +FRR +++   PD +T   + SAC  L  L+ G W H
Sbjct: 177 NVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIH 236

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
             I+   +  +V +V V  SL+DMY KCG+++ AR VF+ MP++D+ SW ++I G+AL+G
Sbjct: 237 KCIM---EMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNG 293

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVL 376
             + A+  F ++   E+  P+  T VGVLSAC   G +  G ++   ++  NE+   PVL
Sbjct: 294 LPKEAIDLFLQM-QRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVL 351

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                L+DL A+ G++  A  +   M  K D V+W +++  
Sbjct: 352 GT--ALIDLYAKCGSMSRAWEVFKGMKEK-DRVVWNAIISG 389


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 349/603 (57%), Gaps = 22/603 (3%)

Query: 19   SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRII 75
            ++F   + EG   + ++ LS L    S   L+   ++H  A+ T L    +   + S  I
Sbjct: 510  TVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFR---VGSAFI 566

Query: 76   H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
            H +     +D A  +F ++   +  TWN +I   A+    + +A+ LF +M  +G  +PD
Sbjct: 567  HMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGR-EALSLFLQMQREG-FIPD 624

Query: 135  KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
              TF   L A     A    K+ H+H    GLV D+ + N+L+H Y+ CG++  A +VFD
Sbjct: 625  ATTFINILSANVDEEALEWVKEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFD 683

Query: 195  NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATL 251
            +M+ER++ +W +MI    Q G    A   F  +Q+L E   PD  T+ SI SACA    L
Sbjct: 684  DMVERNVTTWTMMIGGLAQHGCGHDAFSHF--LQMLREGIVPDATTYVSILSACASTGAL 741

Query: 252  SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                W            LV+D+ V N+L+ MY KCGS+D AR VF+ M +RD+ SW  +I
Sbjct: 742  E---WVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMI 798

Query: 312  LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
             G A HGR   AL +F ++   E F PN  ++V VL+AC+H G+V EGR  F  M  +Y 
Sbjct: 799  GGLAQHGRGLEALDFFVKMK-SEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYG 857

Query: 372  ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            I P +EHY C+VDLL RAG ++EA   + NMP++PD   W +LL AC   + ++ ++E  
Sbjct: 858  IEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT-YGNLEMAEFA 916

Query: 432  AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
            AK+ ++ +    S  YVLLS +YA+  +W    LVR +M  KG+ KEPG S IE+D   H
Sbjct: 917  AKERLKLKPKSAS-TYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIH 975

Query: 492  EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
             F  GDTSHP++K+IY  L+ + E+LK++GY PD ++  + +   + K+ +L  HSE+LA
Sbjct: 976  SFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPD-TRLVLRNTDQEHKEQALCSHSEKLA 1034

Query: 552  IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
            I  G+++ +   PIRV+KNLRVC DCH  TK IS+I   EI+ RD  RFHHFKDG CSC 
Sbjct: 1035 IVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCG 1094

Query: 612  DYW 614
            DYW
Sbjct: 1095 DYW 1097



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 186/374 (49%), Gaps = 23/374 (6%)

Query: 50  KQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           KQ+H   +++ + Q     +K L +Y R         L  A +VF ++   N + W T+I
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRC------GRLQCARQVFDKLLKKNIYIWTTMI 191

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A    A+  A+ ++ +M ++    P++ T+   LKAC        GK+ HAHI + G
Sbjct: 192 GGYAEYGHAE-DAMRVYDKMRQECG-QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSG 249

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
             SDV +  +L++ Y  CG ++ A  +FD M+ER+++SW VMI     +G    A  LF 
Sbjct: 250 FQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFL 309

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           +MQ   F P+ YT+ SI +A A    L      H++ +   +  L  D+ V N+L+ MY 
Sbjct: 310 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV---NAGLALDLRVGNALVHMYA 366

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K GS+D AR VF+ M +RD+ SW  +I G A HGR + A   F ++       PN  T++
Sbjct: 367 KSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL-PNLTTYL 425

Query: 345 GVLSACNHRGMVSEGRDYFDVM---INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
            +L+A       +   ++  V+     E      L     L+ + A+ G+ID+A  LV +
Sbjct: 426 SILNASAIAS--TSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA-RLVFD 482

Query: 402 MPMKPDAVIWRSLL 415
                D + W +++
Sbjct: 483 GMCDRDVISWNAMM 496



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 166/337 (49%), Gaps = 16/337 (4%)

Query: 20  IFNNNRNEGSFNN---HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   + EG   N   + S+L++     ++  +K++H+ A+   L      L + + ++H
Sbjct: 307 LFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD---LRVGNALVH 363

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    +D A  VF  +   + F+W  +I   A+    + +A  LF +M   G  LP+ 
Sbjct: 364 MYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQ-EAFSLFLQMQRNG-CLPNL 421

Query: 136 HTFPFALKACAY--LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
            T+   L A A     A    K  H H  + G +SD+ I N+LIH YA CG +D A  VF
Sbjct: 422 TTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVF 481

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D M +R ++SWN M+    Q G    A  +F +MQ     PD  T+ S+ +       L 
Sbjct: 482 DGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALE 541

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
              W +       +  L++D  V ++ I MY +CGS+D AR +F+ +  R +T+WN++I 
Sbjct: 542 ---WVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIG 598

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           G A       AL  F ++   E F P++ TF+ +LSA
Sbjct: 599 GAAQQRCGREALSLFLQM-QREGFIPDATTFINILSA 634



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 156/299 (52%), Gaps = 8/299 (2%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+ + +  ++QG +  D  ++   L+ C         KQ H  I K G+  ++Y+ N L+
Sbjct: 102 AVAMLKIRVQQG-IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGY 236
             Y  CG L  A +VFD +L++++  W  MI  + ++G  + A++++ +M Q   +P+  
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEI 220

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T+ SI  AC     L  G   HA+I++       +DV V  +L++MY KCGS++ A+ +F
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHIIQ---SGFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           + M +R++ SW  +I G A +GR + A   F ++   E F PNS T+V +L+A    G +
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQM-QREGFIPNSYTYVSILNANASAGAL 336

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              ++     +N   +   L     LV + A++G+ID+A  +   M  + D   W  ++
Sbjct: 337 EWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER-DIFSWTVMI 393


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 345/608 (56%), Gaps = 54/608 (8%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           P PQ+ + +  +N + + S      LL +     S  +L+Q+HAQ ++T  P    ++L 
Sbjct: 42  PIPQSPNRNQIHNVKPQSSETLKIDLLRNFN---SPFELRQVHAQIIKTNAPL---SILP 95

Query: 71  YSRIIHFASFA-DLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            +R+    +F     YA ++F  +E   P +F WN+ ++A A   D+   AI+LF R+  
Sbjct: 96  LTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEG-DSPIDAIMLFYRL-R 153

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           Q +V PD  T    L+AC  L   S G+  H  + K G  S                   
Sbjct: 154 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS------------------- 194

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
                           W  MI  +VQ G+   A+ LF +M+    + +  T  ++ +ACA
Sbjct: 195 ----------------WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 238

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L  L LGM  H Y  RH       +V ++N+LIDMY KCG L+ A +VFE M +R + S
Sbjct: 239 DLGALDLGMRIHEYSNRH---GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVS 295

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W+++I G A+HGRAE AL+ F  +  +    PN +TF+G+L AC+H G++SEGR +F  M
Sbjct: 296 WSAMIGGLAMHGRAEEALRLFSDMS-QVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 354

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +Y I P +EHYGC+VDLL+RAG + EA   + NMPMKP+ V+W +LL A C+ H +V 
Sbjct: 355 TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA-CRVHKNVE 413

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           ++EE  K ++E +  +  G YV+LS +YA A RW D   VRK M D+ V K PG SSI +
Sbjct: 414 MAEEAIKHLLELD-PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITV 472

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           DG+ HEF AG+ SHP T+QI+   + + E+++ +GY P+ S   ++D  +  K   +  H
Sbjct: 473 DGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTS-VVLLDIEEGEKVKFVSRH 531

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LA+  G++N     PIR+ KNLR+C+DCH   KLIS I N EI+VRDR RFH F D 
Sbjct: 532 SEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDN 591

Query: 607 SCSCMDYW 614
           SCSC DYW
Sbjct: 592 SCSCRDYW 599


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/599 (38%), Positives = 352/599 (58%), Gaps = 14/599 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   R  G   N+ ++ ++L  C  +   K    +H  AL+    +     +    +  
Sbjct: 192 LFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLEL-- 249

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    ++  A + F ++   +   W+ +I   A+S D   +A+ LF RM +   V+P+  
Sbjct: 250 YTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQS-DKSKEALELFCRMRQSSVVVPNNF 308

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L+ACA L   + G Q H+ + K GL S+V+++N+L+  YA CG ++ + K+F   
Sbjct: 309 TFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGS 368

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            E++ V+WN +I  +VQ G+ + AL LF  M  L  +P   T+ S+  A A L  L  G 
Sbjct: 369 TEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGR 428

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H+  ++   +    D +V NSLIDMY KCG +D AR  F+ M K+D  SWN++I G++
Sbjct: 429 QIHSLTIKTMYNK---DSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYS 485

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           +HG    AL  FD ++ + +  PN +TFVGVLSAC++ G++ +GR +F  M+ +Y I P 
Sbjct: 486 IHGLGMEALNLFD-MMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPC 544

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHY C+V LL R+G  DEA+ L+  +P +P  ++WR+LL AC   H ++ L +  A++V
Sbjct: 545 IEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVI-HKNLDLGKVCAQRV 603

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           +E E       +VLLS +YA+A+RW++V  VRK M  K V KEPG S +E  G+ H F  
Sbjct: 604 LEMEPQD-DATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTV 662

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GDTSHP  K I+  L+ + +K +  GY PD S   ++D  DD K+  L +HSERLA+A G
Sbjct: 663 GDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCS-VVLLDVEDDEKERLLWMHSERLALAFG 721

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++ +  G  IR+ KNLR+C DCH V KL+S+I   EI++RD  RFHHF+ G CSC DYW
Sbjct: 722 LIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 169/340 (49%), Gaps = 8/340 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +  F  L+ A ++F ++   N+ ++ TL +  +RS   +    +L +   E   V  ++ 
Sbjct: 48  YVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEV--NQF 105

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
            F   LK    +         HA+++K G  +D ++  +LI  Y+ CG++D A +VFD +
Sbjct: 106 VFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGI 165

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             + +VSW  M+  + +    + +L LF +M+I+ + P+ +T  +   +C GL    +G 
Sbjct: 166 YFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGK 225

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H   L+ C      D+ V  +L+++Y K G +  A+Q FE MPK DL  W+ +I  +A
Sbjct: 226 SVHGCALKVCYDR---DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYA 282

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
              +++ AL+ F R+       PN+ TF  VL AC    +++ G      ++ +  +   
Sbjct: 283 QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL-KVGLDSN 341

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +     L+D+ A+ G I+ ++ L +    K + V W +++
Sbjct: 342 VFVSNALMDVYAKCGEIENSVKLFTGSTEK-NEVAWNTII 380


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/553 (39%), Positives = 333/553 (60%), Gaps = 14/553 (2%)

Query: 70  IYSRIIHFASFA---DLDYAFRVFYQIENPNSFTWNTLIRACARSVDA-KPQAIVLFQRM 125
           I  ++++F + +    L YA  VF++I NP +  WN++IR  ++S    + QAIV +  M
Sbjct: 432 ISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHM 491

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +   +  PD +TF F LKAC       + ++ H  I + G   DV +  +LI  YA  G 
Sbjct: 492 LSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGL 551

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSA 244
           ++ A+KVF+ M  R LVSWN MI  + Q G  + ALK++ +M+I     DG+T  S+ S+
Sbjct: 552 IETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSS 611

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA +  L +G+  H +     +  LV ++ V N+LIDMY KCGSL  A  +F SMPKRD+
Sbjct: 612 CAHVGALHMGVQMHRFA---GERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDV 668

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +WNS+I+G+ +HGR + A+ +F  +++     PNSITF+G+L  C+H+G+V EG  YF 
Sbjct: 669 FTWNSMIVGYGVHGRGDEAITFFGSMLMA-GVRPNSITFLGLLCGCSHQGLVKEGVQYFH 727

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
           +M +E+N+ P ++HYGC+VDL  RAG + EAL ++ + P + D V+WR+LL + CK H +
Sbjct: 728 MMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGS-CKIHRN 786

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V + E   + +++  G + +G  VLLS +YA A+    V  +RKL+  +G+   PG S I
Sbjct: 787 VEIGEMAMRNLVQL-GSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 845

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK---QS 541
           E+    H F   D SHP +++IY  L+ +  +    GY  + S      E +  +   ++
Sbjct: 846 EVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWET 905

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           S   HSE+LAIA G+     G  + + KNLRVC+DCH  TK +S+ F+ EIIVRDR RFH
Sbjct: 906 STSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFH 965

Query: 602 HFKDGSCSCMDYW 614
           HF+ G CSC ++W
Sbjct: 966 HFRGGHCSCKEFW 978


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/596 (38%), Positives = 354/596 (59%), Gaps = 23/596 (3%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLKQIHAQAL----RTALPQQHKTLLIYSRIIHFASFA 81
           N G+     +LL   T    +++ K IHA  L    R  L  Q+  L +Y++        
Sbjct: 11  NAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKC------G 64

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           DL YA ++F ++ + +  TW  LI   ++  D    A++L   M+  G + P++ T    
Sbjct: 65  DLVYARKLFDEMSSRDVVTWTALITGYSQH-DRPQDALLLLPEMLRIG-LKPNQFTLASL 122

Query: 142 LKACAYLFAFS--QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           LKA + + +    QG+Q H    + G  S+VY++ +++  YA C HL+ A  +FD M+ +
Sbjct: 123 LKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSK 182

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           + VSWN +I  + + G+ D A  LF  M +   +P  +T+ S+  ACA + +L  G W H
Sbjct: 183 NEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVH 242

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           A +++  +  LV    V N+L+DMY K GS++ A++VF+ + KRD+ SWNS++ G++ HG
Sbjct: 243 ALMIKWGE-KLVA--FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHG 299

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             + AL+ F+ ++     +PN ITF+ VL+AC+H G++ EGR YFD M+ +YN+ P + H
Sbjct: 300 LGKVALQRFEEML-RTRIAPNDITFLCVLTACSHAGLLDEGRHYFD-MMKKYNVEPQISH 357

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           Y  +VDLL RAG++D A+  +S MP+KP A +W +LL AC + H ++ L    A+ + E 
Sbjct: 358 YVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGAC-RMHKNMELGGYAAECIFEL 416

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           +     G +VLL  +YA A RWND   VRK+M + GV KEP CS +E++   H F A D 
Sbjct: 417 DSHY-PGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDD 475

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
           +HPQ ++I+   + I +K+K  GY PD S   +  +  + +++ L+ HSE+LA+A  +LN
Sbjct: 476 AHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQE-REAKLQYHSEKLALAFALLN 534

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG  IR+ KN+R+C DCH   K +S++   EIIVRD  RFHHF DG+CSC DYW
Sbjct: 535 TPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 112/283 (39%), Gaps = 40/283 (14%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIH-AQALRTALPQQHKTLLIYSRIIHFA 78
           +F+N   E     H +  S L  C SM  L+Q     AL     ++    +  + +  +A
Sbjct: 206 LFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYA 265

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
               ++ A +VF ++   +  +WN+++   ++    K  A+  F+ M+ +  + P+  TF
Sbjct: 266 KSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKV-ALQRFEEML-RTRIAPNDITF 323

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              L AC++     +G+                      H++      D+  K     +E
Sbjct: 324 LCVLTACSHAGLLDEGR----------------------HYF------DMMKKY---NVE 352

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAH 258
             +  +  M+D   + G  D A++    M I  +P    + ++  AC     + LG +A 
Sbjct: 353 PQISHYVTMVDLLGRAGHLDRAIQFISEMPI--KPTAAVWGALLGACRMHKNMELGGYAA 410

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             I     H   T VL+ N    +Y   G  + A +V + M +
Sbjct: 411 ECIFELDSHYPGTHVLLYN----IYALAGRWNDAAKVRKMMKE 449


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/643 (37%), Positives = 360/643 (55%), Gaps = 72/643 (11%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIE 94
           ++S L     ++Q+ QIHA  ++T+L   +  L  +  R+   +S  DL YA  VF +I 
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 65

Query: 95  NPNSFTWNTL------------------------------------IRACARSVD----- 113
           +P++F WNT+                                    I+AC R  D     
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 114 ----------------AKPQAIVLFQRM--IEQGNVLPDKHTFPFALKACAYLFAFSQ-G 154
                            +   I ++ +   IE    + D+   P  +     L  + + G
Sbjct: 126 KLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVG 185

Query: 155 KQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           +   AH +F R    D+   N++IH +AS G +  A K+FD   ER L+SW+ MI A+ +
Sbjct: 186 EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAK 245

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             + + AL+LF  MQ+    PD  T  S+ SAC  +  L +G   H  I R+    +  D
Sbjct: 246 ARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERN---RIEID 302

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + +  SL+DMY KCG +D + +VF  M  RD+ +W+++I+G A HG  E AL +F +++ 
Sbjct: 303 LKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMIS 362

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           E+   PN +TF+GVLSAC+H G+V EG  YF  M   Y+++P +EHYGC+VD+L RAG +
Sbjct: 363 ED-IKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRL 421

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
            EA+ L+ +MP  PDA++WR+LL A C+ + +V ++EE    ++E E  +  G YVLLS 
Sbjct: 422 QEAMELIKSMPFAPDAIVWRALLGA-CRIYKNVEIAEEATVNLLELEPHV-DGNYVLLSN 479

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +Y+ A+ W+ V  VR++M +  + K PG SSIE+D   HEF AGD SHP++K+I   L  
Sbjct: 480 IYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSE 539

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
           I  +LK+ GY P    A+++ + D+  K+++L  HSE+LAIA G+L+  PG  IR+ KNL
Sbjct: 540 ITARLKANGYAP--LTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNL 597

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH   KLISR +   IIVRDR RFHHF +GSCSC DYW
Sbjct: 598 RVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/533 (42%), Positives = 316/533 (59%), Gaps = 10/533 (1%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L+   +VF ++   +  +WNTL+  CA S     +A+ L + M   G   PD  T    L
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAES-GRHGEALGLVREMWRDG-CKPDSFTLSSVL 180

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
              A      +G + H    + G   DV++ +SLI  YA+C   D + KVFDN+  R  +
Sbjct: 181 PIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI 240

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
            WN M+    Q G  D AL LFRRM     +P   TF S+  AC  LA+L LG   HAY+
Sbjct: 241 LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYV 300

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +R        +V +++SLIDMYCKCG++ IAR++F+ +   D+ SW ++I+G ALHG A 
Sbjct: 301 IRG---GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAR 357

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL  FDR+ +  +  PN ITF+ VL+AC+H G+V +G  YF+ M + Y I P LEH+  
Sbjct: 358 EALVLFDRMELG-NLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAA 416

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           L D L R G ++EA + +S M +KP A +W +LL AC K H + VL+EEVAK++ + E  
Sbjct: 417 LADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRAC-KVHKNTVLAEEVAKKIFDLEPR 475

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
              G +++LS  Y+S+ RWN+   +RK M  KG+ KEP CS IE+    H F A D SHP
Sbjct: 476 -SMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHP 534

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
             ++I   L++  E++  +GY P+ +     D  ++ K S L  HSE+LAI  GI++  P
Sbjct: 535 WYERIIDALNVFSEQMVRQGYVPN-TDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPP 593

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  IRV KNLRVC DCH VTK IS+I   EI++RD  RFHHFKDG CSC D+W
Sbjct: 594 GTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 152/337 (45%), Gaps = 31/337 (9%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQ------GNVLPDKHTFPFALKACAYLFAFSQ 153
           +W   IR  A   D    AI LF RM          +VL    + P ALK+CA L   + 
Sbjct: 21  SWAHQIRVAASQGDFH-HAIALFLRMRASDPAAACSSVLT---SLPGALKSCAALGLRAL 76

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFY--------------ASCGHLDLANKVFDNMLER 199
           G   HA   + G  +D +  N+L++ Y               S   L+   KVFD M E+
Sbjct: 77  GASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEK 136

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAH 258
            +VSWN ++    + G    AL L R M +   +PD +T  S+    A  A +  GM  H
Sbjct: 137 DVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELH 196

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            +  R+  H    DV V +SLIDMY  C   D + +VF+++P RD   WNS++ G A +G
Sbjct: 197 GFATRNGFHD---DVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNG 253

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             + AL  F R+ +     P  +TF  ++ AC +   +  G+     +I       V   
Sbjct: 254 SVDEALGLFRRM-LHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFIS 312

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              L+D+  + GN+  A  +   +   PD V W +++
Sbjct: 313 -SSLIDMYCKCGNVSIARRIFDRI-QSPDIVSWTAMI 347



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 20/305 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           SS+L    E   + +  ++H  A R      H  + + S +I  +A+    DY+ +VF  
Sbjct: 177 SSVLPIFAEGADVRRGMELHGFATRNGF---HDDVFVGSSLIDMYANCTRTDYSVKVFDN 233

Query: 93  IENPNSFTWNTLIRACAR--SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           +   ++  WN+++  CA+  SVD   +A+ LF+RM+  G + P   TF   + AC  L +
Sbjct: 234 LPVRDAILWNSMLAGCAQNGSVD---EALGLFRRMLHSG-IKPMPVTFSSLIPACGNLAS 289

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GKQ HA++ + G   +V+I++SLI  Y  CG++ +A ++FD +    +VSW  MI  
Sbjct: 290 LLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMG 349

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH-S 268
               G    AL LF RM++   +P+  TF ++ +AC+    +  G W   Y     DH  
Sbjct: 350 HALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKG-W--KYFNSMSDHYG 406

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRA----EAA 323
           +V  +  + +L D   + G L+ A      M  +   S W++++    +H       E A
Sbjct: 407 IVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVA 466

Query: 324 LKYFD 328
            K FD
Sbjct: 467 KKIFD 471


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/588 (38%), Positives = 345/588 (58%), Gaps = 19/588 (3%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD----YAF 87
           +L   ++ C +M  L   +Q+H+QA+R  L        +   +I+  +   +D     A 
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDR---CVGCCLINMYAKCSVDGSMCAAR 329

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           ++F QI + N F+W  +I    +      +A+ LF+ MI   +V+P+  TF   LKACA 
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILT-HVIPNHFTFSSTLKACAN 388

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L A   G+Q   H  K G  S   + NSLI  YA  G +D A K FD + E++L+S+N +
Sbjct: 389 LAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTV 448

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           IDA+ +    + AL+LF  ++        +TF S+ S  A + T+  G   HA +++   
Sbjct: 449 IDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-- 506

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  +  V N+LI MY +CG+++ A QVFE M  R++ SW SII GFA HG A  AL+ 
Sbjct: 507 -GLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALEL 565

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F +++ EE   PN +T++ VLSAC+H G+V+EG  +F  M  E+ + P +EHY C+VD+L
Sbjct: 566 FHKML-EEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDIL 624

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G++ EA+  +++MP K DA++WR+ L A C+ H ++ L +  AK +IE E       
Sbjct: 625 GRSGSLSEAIQFINSMPYKADALVWRTFLGA-CRVHGNLELGKHAAKMIIEQEPHD-PAA 682

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS +YAS  +W++V  +RK M +K + KE GCS +E++   H+F+ GDTSHP+  +I
Sbjct: 683 YILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEI 742

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L  +  K+K  GY P+     + D  ++ K+  L  HSE++A+A G+++     PIR
Sbjct: 743 YDELQNLSVKIKKLGYVPNL-DFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIR 801

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VFKNLR+C DCH   K IS     EIIVRD  RFHH KDG CSC +YW
Sbjct: 802 VFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 182/366 (49%), Gaps = 22/366 (6%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  AF+VF ++   N+ TW  +I    +      +AI LF  MI  G   PD+ T   
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQ-FGYAGEAIDLFLEMILSG-YEPDRFTLSG 276

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNML 197
            + ACA +     G+Q H+   + GL  D  +   LI+ YA C   G +  A K+FD +L
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 198 ERSLVSWNVMIDAFVQFGEFD-SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG- 254
           + ++ SW  MI  +VQ G +D  AL LFR M +    P+ +TF S   ACA LA L +G 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 255 -MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
            ++ HA  L     + V      NSLI MY + G +D AR+ F+ + +++L S+N++I  
Sbjct: 397 QVFTHAVKLGFSSVNCVA-----NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A +  +E AL+ F+  + ++    ++ TF  +LS     G + +G      +I      
Sbjct: 452 YAKNLNSEEALELFNE-IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS---G 507

Query: 374 PVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
             L    C  L+ + +R GNI+ A  +  +M  + + + W S++     KH     + E+
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFA-KHGFATQALEL 565

Query: 432 AKQVIE 437
             +++E
Sbjct: 566 FHKMLE 571



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 127/274 (46%), Gaps = 10/274 (3%)

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F    NPN  T   LI+        K  AI   + M+ QG+  PD  T+   LK C    
Sbjct: 25  FPTFTNPNPLT-GRLIQEINNGRLHK--AISTLEHMVHQGS-HPDLQTYSLFLKKCIRTR 80

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMI 208
           +F  G   H  + +  L  D    NSLI  Y+ CG  + A  +F  M   R L+SW+ M+
Sbjct: 81  SFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMV 140

Query: 209 DAFVQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F      F + L     ++  + P+ Y F + T AC+    +S+G     ++++    
Sbjct: 141 SCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVK--TG 198

Query: 268 SLVTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
            L +DV V   LIDM+ K  G L  A +VFE MP+R+  +W  +I      G A  A+  
Sbjct: 199 YLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDL 258

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           F  +++   + P+  T  GV+SAC +  ++  G+
Sbjct: 259 FLEMIL-SGYEPDRFTLSGVISACANMELLLLGQ 291



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           PD  T+      C    +  +G   H  + +     L  D +  NSLI +Y KCG  + A
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQS---DLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 293 RQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
             +F+ M   RDL SW++++  FA +     AL  F  ++ E  + PN   F     AC+
Sbjct: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMI-ENGYYPNEYCFAAATRACS 179

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEH---YGC-LVDLLARA-GNIDEALHLVSNMPMKP 406
               VS G   F  ++     T  L+     GC L+D+  +  G++  A  +   MP + 
Sbjct: 180 TAEFVSVGDSIFGFVVK----TGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPER- 234

Query: 407 DAVIWRSLL 415
           +AV W  ++
Sbjct: 235 NAVTWTLMI 243



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 125/288 (43%), Gaps = 43/288 (14%)

Query: 20  IFNNNRNEG---SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +FN   ++G   S    +SLLS      ++ + +QIHA+ +++ L       +  + I  
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQS--VCNALISM 521

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++   +++ AF+VF  +E+ N  +W ++I   A+   A  QA+ LF +M+E+G V P+  
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA-TQALELFHKMLEEG-VRPNLV 579

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L AC+++   ++G +     FK      +Y  + +I                   
Sbjct: 580 TYIAVLSACSHVGLVNEGWKH----FK-----SMYTEHGVI------------------- 611

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
               +  +  M+D   + G    A++    M   ++ D   +++   AC     L LG  
Sbjct: 612 --PRMEHYACMVDILGRSGSLSEAIQFINSMP--YKADALVWRTFLGACRVHGNLELGKH 667

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           A   I+    H     +L++N    +Y      D    + ++M +++L
Sbjct: 668 AAKMIIEQEPHDPAAYILLSN----LYASTSKWDEVSNIRKAMKEKNL 711


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/654 (37%), Positives = 349/654 (53%), Gaps = 83/654 (12%)

Query: 32  NHSSLLSS--LTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFAD-LDY 85
           NH+  L S  LT C+S+  LKQ+HA   +T L   P     LL++S +    S  D LDY
Sbjct: 2   NHTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAV----SVPDALDY 57

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A R+F    NP+ F  NTLIR  A S D    +++ F  M  +     D  +F F LKA 
Sbjct: 58  ARRLFLHFPNPDVFMHNTLIRGLAES-DTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAA 116

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE------- 198
           A   +   G Q H      GL + +++  +L+  Y+ CG +  A KVF+ M E       
Sbjct: 117 ASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWN 176

Query: 199 ------------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRM------- 227
                                   R+L SWNVM+  + + GE + A KLF  M       
Sbjct: 177 AVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVS 236

Query: 228 -------------------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
                                    Q+   P+  +     SACA    +  G   H +I 
Sbjct: 237 WSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIE 296

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
           +      +  V VNN+L+D Y KCG++ +AR VFE MP KR + SW S+I G A+HG  E
Sbjct: 297 KS---GFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGE 353

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A++ F  +  E    P+ I F+ +L AC+H G++ +G +YF  M + YNI P +EHYGC
Sbjct: 354 EAIQLFHEME-ESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGC 412

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDL  RAG +D+A   + +MP+ P A+IWR+LL AC   H +V L+E V +++ E +  
Sbjct: 413 MVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGAC-SIHGNVKLAERVKERLSELDPN 471

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             SG +VLLS +YA A +W DV  VR+ MTD+ + K PG S IE+D I + F AG+  + 
Sbjct: 472 -NSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNS 530

Query: 502 QTKQIYGFLDLIDEKLKSRG-YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
            T++ Y  L  I  KL+  G Y P+   + + D  D+ K+ S+  HSE+LA+A GI  L 
Sbjct: 531 ITEEAYEKLKEIMLKLRVEGCYIPEVG-SVLHDIEDEEKEDSVSRHSEKLAVAFGIARLC 589

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            G  IR+ KNLRVC+DCH V KLIS+++ +EI+VRDR+RFH FK GSCSC DYW
Sbjct: 590 KGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 339/568 (59%), Gaps = 13/568 (2%)

Query: 49  LKQIHAQALRTALPQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIENPNSFTWNTLIRA 107
           L Q+HA  + +          + +++++ A  A  + Y  ++F  + NP+SF + +LIR+
Sbjct: 28  LHQVHAHVIVSGYGCSR---FLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS 84

Query: 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
            ++  +    ++  + RM+   NV P  +TF   +K+CA L A   G+  H H+   G  
Sbjct: 85  TSKFHNFSVYSLYFYTRMV-LSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFG 143

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           SDVY+  +L+ FY  CG L  A KVFD M +RS+V+WN MI  + Q G    A++LF RM
Sbjct: 144 SDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRM 203

Query: 228 -QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
            +I  EP+  TF S+ SACA L    LG W H Y +    + L  +V++  SLI+MY +C
Sbjct: 204 KEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAV---GNGLDLNVVLGTSLINMYTRC 260

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G++  AR+VF+SM +R++ +W ++I G+  +G    A++ F  +       PNSITFV V
Sbjct: 261 GNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMR-RNGLLPNSITFVAV 319

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC H G+V+EGR  F+ M  EY + P +EH+ CLVD+L RAG +DEA + +  +  +P
Sbjct: 320 LSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEP 379

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
              IW ++L AC K H +  L  +VA+  + SE G     YV+LS +YA A R + V +V
Sbjct: 380 APAIWTAMLGAC-KMHKNFGLGAQVAEHRLASEPG-NPAHYVILSNIYALAGRMDQVEMV 437

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R  M  K + K+ G S+I++D   + F  GD SH +T +IY +LD +  K +  GY    
Sbjct: 438 RDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVT-V 496

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           S + M +  ++ ++ +L  HSE+LAIA G+L    G  IR+ KNLR+C+DCH   K IS 
Sbjct: 497 SDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISV 556

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I N EIIVRD+ RFHHFK+GSCSC+DYW
Sbjct: 557 ISNREIIVRDKLRFHHFKNGSCSCLDYW 584


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 341/571 (59%), Gaps = 19/571 (3%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           ++ + KQIH   L+          ++ S +  ++   +++   +VF ++E+ +  +WN+L
Sbjct: 129 ALQEGKQIHGLVLKIGFGVD--KFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSL 186

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I   AR  + +  A+ +F+ M       P+K +F + +       + S   +A   +F R
Sbjct: 187 IDGYARCGEIE-LALEMFEEM-------PEKDSFSWTILIDG--LSKSGKLEAARDVFDR 236

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
             + +    N++I+ Y   G  + A ++FD M ERSLV+WN MI  + +  +F  ALKLF
Sbjct: 237 MPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLF 296

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M +    P+  T     SA +G+ +L  G W H+YI++       TD ++   LI+MY
Sbjct: 297 EVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKS---GFKTDGVLGTLLIEMY 353

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCGS+  A +VF S+PK+ L  W S+I+G  +HG  E  L+ FD +       P++ITF
Sbjct: 354 SKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMC-RTGLKPHAITF 412

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           +GVL+AC+H G   +   YF +M  +Y I P +EHYGCL+D+L RAG+++EA   +  MP
Sbjct: 413 IGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMP 472

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           +K + VIW SLL    +KH ++ + E  A+ +I+      +G YV+LS +YA+A  W  V
Sbjct: 473 IKANKVIWTSLLSGS-RKHGNIRMGEYAAQHLIDLAPDT-TGCYVILSNMYAAAGLWEKV 530

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR++M  KG+ K+PGCSSIE  G  HEF  GD SHPQT++IY  L  + +KL   G+ 
Sbjct: 531 RQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHI 590

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD +Q  +  E D+ K++ L  HSERLAIA G+LN+K G PIR+ KNLR+C DCH VTKL
Sbjct: 591 PDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKL 650

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +S I+N EII+RD +RFHHFK GSCSC D+W
Sbjct: 651 LSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 195/375 (52%), Gaps = 33/375 (8%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-----LDYAFRVFYQIE 94
           L  C +  +  Q+HA +++TA    H +  + SR++  A +AD     L YA  +F  I+
Sbjct: 22  LQNCGTEREANQLHALSIKTA-SLNHPS--VSSRLL--ALYADPRINNLQYAHSLFDWIQ 76

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            P   +WN LI+ C         AI LF +++   + +PD  T P  LK CA L A  +G
Sbjct: 77  EPTLVSWNLLIK-CYIENQRSNDAIALFCKLL--CDFVPDSFTLPCVLKGCARLGALQEG 133

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           KQ H  + K G   D ++ +SL+  Y+ CG ++L  KVFD M ++ +VSWN +ID + + 
Sbjct: 134 KQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARC 193

Query: 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           GE + AL++F  M    E D +++  +    +    L              D   + + +
Sbjct: 194 GEIELALEMFEEMP---EKDSFSWTILIDGLSKSGKLEAARDVF-------DRMPIRNSV 243

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             N++I+ Y K G  + A+++F+ MP+R L +WNS+I G+  + +   ALK F+ +++ E
Sbjct: 244 SWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFE-VMLRE 302

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC----LVDLLARAG 390
             SPN  T +G +SA +  GMVS G   +   ++ Y +    +  G     L+++ ++ G
Sbjct: 303 DISPNYTTILGAVSAAS--GMVSLGTGRW---VHSYIVKSGFKTDGVLGTLLIEMYSKCG 357

Query: 391 NIDEALHLVSNMPMK 405
           ++  AL +  ++P K
Sbjct: 358 SVKSALRVFRSIPKK 372


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 345/611 (56%), Gaps = 43/611 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL +L+  KS+ +  +IH  A +              R+  +A+   +  A  +F ++ +
Sbjct: 128 LLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRM--YAACGRIAEARLMFDKMFH 185

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            +  TW+ +I    +S      A++LF+ M +  NV PD+      L AC      S GK
Sbjct: 186 RDVVTWSIMIDGYCQS-GLFNDALLLFEEM-KNYNVEPDEMMLSTVLSACGRAGNLSYGK 243

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA-------------------------- 189
             H  I +  +V D ++ ++L+  YASCG +DLA                          
Sbjct: 244 MIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLG 303

Query: 190 -----NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
                  VF+ M+++ LV W+ MI  + +      AL LF  MQ L  +PD  T  S+ +
Sbjct: 304 QIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVIT 363

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L    W H ++ ++        + +NN+LI+MY KCGSL+ AR++F+ MP+++
Sbjct: 364 ACAHLGALDQAKWIHLFVDKN---GFGGALPINNALIEMYAKCGSLERARRIFDKMPRKN 420

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SW  +I  FA+HG A +AL++F ++  +E+  PN ITFVGVL AC+H G+V EGR  F
Sbjct: 421 VISWTCMISAFAMHGDAGSALRFFHQME-DENIEPNGITFVGVLYACSHAGLVEEGRKIF 479

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             MINE+NITP   HYGC+VDL  RA  + EAL LV  MP+ P+ +IW SL+ A C+ H 
Sbjct: 480 YSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLM-AACRVHG 538

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
            + L E  AK+++E +     G +V LS +YA ARRW DVG VRKLM  KG++KE GCS 
Sbjct: 539 EIELGEFAAKRLLELDPD-HDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSR 597

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
            E++   HEF   D SH    +IY  L  +  KLK  GY+P+ + + +VD  ++ K+  +
Sbjct: 598 FELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPN-TCSILVDLEEEEKKEVV 656

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LA+  G++    G  IR+ KNLRVC+DCH   KL S+++  EI+VRDR RFHH+
Sbjct: 657 LWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHY 716

Query: 604 KDGSCSCMDYW 614
           KDG CSC DYW
Sbjct: 717 KDGVCSCKDYW 727



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 213/420 (50%), Gaps = 41/420 (9%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
            ++H +L S+L+   S++ LKQ+HAQ LR+ L +   +LL+   I   A  + LDYA  V
Sbjct: 20  LHSHHTLFSALSSATSLTHLKQVHAQILRSKLDRS-TSLLVKLVISSCALSSSLDYALSV 78

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  I  P +   N  +R  +RS + + + +++++RM  QG +  D+ +FP  LKA + + 
Sbjct: 79  FNLIPKPETHLCNRFLRELSRSEEPE-KTLLVYERMRTQG-LAVDRFSFPPLLKALSRVK 136

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           +  +G + H    K G  SD ++   L+  YA+CG +  A  +FD M  R +V+W++MID
Sbjct: 137 SLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMID 196

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + Q G F+ AL LF  M+    EPD     ++ SAC     LS G   H +I+   +++
Sbjct: 197 GYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIM---ENN 253

Query: 269 LVTDVLVNNSLIDMYCKCGSLDI-------------------------------ARQVFE 297
           +V D  + ++L+ MY  CGS+D+                               AR VF 
Sbjct: 254 IVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFN 313

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            M K+DL  W+++I G+A     + AL  F+ +       P+ +T + V++AC H G + 
Sbjct: 314 QMVKKDLVCWSAMISGYAESDSPQEALNLFNEM-QSLGIKPDQVTMLSVITACAHLGALD 372

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + + +  + +++      L     L+++ A+ G+++ A  +   MP K + + W  ++ A
Sbjct: 373 QAK-WIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRK-NVISWTCMISA 430



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 48/258 (18%)

Query: 12  TPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECK---SMSQLKQIH----AQALRTALPQQ 64
           +PQ  + ++FN  ++ G   +  ++LS +T C    ++ Q K IH          ALP  
Sbjct: 335 SPQ-EALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN 393

Query: 65  HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR 124
           +  + +Y++         L+ A R+F ++   N  +W  +I A A   DA   A+  F +
Sbjct: 394 NALIEMYAKC------GSLERARRIFDKMPRKNVISWTCMISAFAMHGDAG-SALRFFHQ 446

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M E  N+ P+  TF   L AC++     +G++                      FY+   
Sbjct: 447 M-EDENIEPNGITFVGVLYACSHAGLVEEGRKI---------------------FYSMIN 484

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244
             ++  K          V +  M+D F +      AL+L   M +   P+   + S+ +A
Sbjct: 485 EHNITPK---------HVHYGCMVDLFGRANLLREALELVEAMPL--APNVIIWGSLMAA 533

Query: 245 CAGLATLSLGMWAHAYIL 262
           C     + LG +A   +L
Sbjct: 534 CRVHGEIELGEFAAKRLL 551


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/547 (42%), Positives = 333/547 (60%), Gaps = 15/547 (2%)

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           LI   I  +  F  L  A  VF ++ + N  +W T+I A + +     +A+     M+ +
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYS-AAKLNDKALEFLVLMLRE 60

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G V P+  T+   L+AC  LF     +Q H  I K GL SDV++ ++LI  Y+  G L+ 
Sbjct: 61  G-VRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A +VFD M+   LV W+ +I  F Q  + D AL+LF+RM+   F     T  S+  AC G
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTG 176

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           LA L LG   H ++L++       D+++NN+L+DMYCKCGSL+ A  VF  M ++D+ SW
Sbjct: 177 LALLELGRQVHVHVLKY-----DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISW 231

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           +++I G A +G ++ ALK F+ + V     PN +T VGVL AC+H G+V EG  YF  M 
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVL-GIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMK 290

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
             + I P  EHYGC++DLL RAG + EA+ L++ M  +PDAV WR+LL+A C+ H +V +
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA-CRVHRNVDV 349

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
           +   AKQ++  +    +G YVLLS +YA+ +RWNDV  VR+ MT++G+ KEPGCS IE+ 
Sbjct: 350 AIHAAKQILRLDPQD-AGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVS 408

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
              H F  GD SHPQ ++I   L+ +  KL   GY PD +   + D   +  Q SLR HS
Sbjct: 409 KQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPD-TNFVLQDLEGEQMQDSLRYHS 467

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           E+LAI  G+++L  G  IR+ KNLR+C DCH  TKL++++    I++RD  R+HHF+DG 
Sbjct: 468 EKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGL 527

Query: 608 CSCMDYW 614
           CSC D+W
Sbjct: 528 CSCGDFW 534



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 145/307 (47%), Gaps = 24/307 (7%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDY 85
           EG   N  +  S L  C  +  L+Q+H   ++  L      + + S +I  ++ + +L+ 
Sbjct: 60  EGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSD---VFVRSALIDVYSRWGELEN 116

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF ++   +   W+++I   A++ D   +A+ LF+RM   G  L  + T    L+AC
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSDGD-EALRLFKRMKRAG-FLAQQTTLTSVLRAC 174

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             L     G+Q H H+ K     D+ +NN+L+  Y  CG L+ AN VF  M+E+ ++SW+
Sbjct: 175 TGLALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWS 232

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI    Q G    ALKLF  M++L  +P+  T   +  AC+    +  G++        
Sbjct: 233 TMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYF------ 286

Query: 265 CDHSLVTDVLVN------NSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALH 317
             HS+     ++        +ID+  + G L  A  +   M  + D  +W +++    +H
Sbjct: 287 --HSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVH 344

Query: 318 GRAEAAL 324
              + A+
Sbjct: 345 RNVDVAI 351



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 12/246 (4%)

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK-LFRRMQI 229
           ++ N LI+ Y   G L  A  VFD M +R++VSW  MI A+      D AL+ L   ++ 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
              P+ +T+ S+  AC GL  L      H  I++     L +DV V ++LID+Y + G L
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLR---QLHCCIIK---IGLDSDVFVRSALIDVYSRWGEL 114

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + A +VF+ M   DL  W+SII GFA +   + AL+ F R+     F     T   VL A
Sbjct: 115 ENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRM-KRAGFLAQQTTLTSVLRA 173

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C    ++  GR    V + +Y+   +L +   L+D+  + G++++A  +   M ++ D +
Sbjct: 174 CTGLALLELGRQ-VHVHVLKYDQDLILNN--ALLDMYCKCGSLEDANAVFVRM-VEKDVI 229

Query: 410 IWRSLL 415
            W +++
Sbjct: 230 SWSTMI 235


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 350/596 (58%), Gaps = 24/596 (4%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           N S+   ++  C ++  L   +Q H QAL          L + S ++  ++   +L  A 
Sbjct: 151 NRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPD---LFVSSALVDMYSKCGELRDAR 207

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR-MIEQ------GNVLPDKHTFPF 140
            +F +I + N  +W ++I    ++ DA  +A++LF+  ++E+      G V  D      
Sbjct: 208 TLFDEISHRNIVSWTSMITGYVQNDDAH-RALLLFKEFLVEESGSEGDGEVCVDPIAMVS 266

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC+ +   S  +  H  + KRG   D+ + N+L+  YA CG L ++ +VFD M ER 
Sbjct: 267 VLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD 326

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD--GYTFQSITSACAGLATLSLGMWAH 258
           ++SWN +I  + Q G    ++++F RM    E +    T  ++  ACA   +  LG   H
Sbjct: 327 VISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH 386

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
             +++     L ++V V  S+IDMYCKCG +++AR+ F+ M ++++ SW++++ G+ +HG
Sbjct: 387 DQVIKM---GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHG 443

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
            A+ AL+ F  + +     PN ITFV VL+AC+H G++ EG  +F  M +E+++ P +EH
Sbjct: 444 HAKEALEVFYEMNMA-GVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEH 502

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           YGC+VDLL RAG + EA  L+  M ++PD V+W +LL AC + H +V L E  A+++ E 
Sbjct: 503 YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGAC-RMHKNVDLGEISARKLFEL 561

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           +   C G YVLLS +YA A RW DV  +R LM + G+ K PG S ++I G  H F  GD 
Sbjct: 562 DPKNC-GYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDR 620

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
            HPQ ++IY +L+ +  KL+  GY PD + + + D   + K+  LR+HSE+LA+A GI+N
Sbjct: 621 EHPQHEKIYEYLEKLSMKLQEVGYVPDMT-SVLHDVGHEEKEMVLRVHSEKLAVAFGIMN 679

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG  I + KNLRVC DCH   K IS+I + EI+VRD  RFHHF+DG CSC DYW
Sbjct: 680 TVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 187/370 (50%), Gaps = 51/370 (13%)

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           ++  N F+WN++I   ARS D+  +A+  F  M  + ++ P++ TFP A+K+C+ L    
Sbjct: 112 VDKTNVFSWNSVIAELARSGDS-VEALRAFSSM-RKLSLKPNRSTFPCAIKSCSALLDLH 169

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+QAH      G   D++++++L+  Y+ CG L  A  +FD +  R++VSW  MI  +V
Sbjct: 170 SGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYV 229

Query: 213 QFGEFDSALKLFRRMQILFEPDG-----------YTFQSITSACAGLATLSLGMWAHAYI 261
           Q  +   AL LF+  + L E  G               S+ SAC+ ++  S+    H ++
Sbjct: 230 QNDDAHRALLLFK--EFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFL 287

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++        D+ V N+L+D Y KCG L ++R+VF+ M +RD+ SWNSII  +A +G + 
Sbjct: 288 IK---RGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMST 344

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNI---TPV 375
            +++ F R+V +   + N++T   VL AC H G    G+   D +I    E N+   T +
Sbjct: 345 ESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSI 404

Query: 376 LEHY-GCLVDLLARA-----------------------GNIDEALHLVSNMPM---KPDA 408
           ++ Y  C    +AR                        G+  EAL +   M M   KP+ 
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 464

Query: 409 VIWRSLLDAC 418
           + + S+L AC
Sbjct: 465 ITFVSVLAAC 474


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/638 (37%), Positives = 358/638 (56%), Gaps = 46/638 (7%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL 61
           A   ++  P T + H ++I N    +    N  +L+ +  +C  M         A++   
Sbjct: 236 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMEN-------AVKVFN 286

Query: 62  PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN----SFTWNTLI-----RACARS 111
             + K ++ ++ ++  ++   +   AF +F  +   N      TW  +I     R C+  
Sbjct: 287 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH- 345

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--- 168
                +A+ +F++MI  G+ LP+  T    L ACA L AFSQG + HA+  K  L++   
Sbjct: 346 -----EALNVFRQMIFSGS-LPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 399

Query: 169 -------DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDS 219
                  D+ + N+LI  Y+ C     A  +FD+  + ER++V+W VMI    Q+G+ + 
Sbjct: 400 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 459

Query: 220 ALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           ALKLF  M        P+ YT   I  ACA LA + +G   HAY+LRH  +   +   V 
Sbjct: 460 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD-SSAYFVA 518

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N LI+MY KCG +D AR VF+SM ++   SW S++ G+ +HGR   AL  FD++  +  F
Sbjct: 519 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR-KAGF 577

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ ITF+ VL AC+H GMV +G  YFD M  +Y +TP  EHY   +DLLAR G +D+A 
Sbjct: 578 VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAW 637

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             V +MPM+P AV+W +LL AC + H++V L+E    +++E       G Y L+S +YA+
Sbjct: 638 KTVKDMPMEPTAVVWVALLSAC-RVHSNVELAEHALNKLVEMNAE-NDGSYTLISNIYAT 695

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW DV  +R LM   G+ K PGCS ++       FF GD SHP + QIY  L+ + ++
Sbjct: 696 AGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDR 755

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +K+ GY P+ +  A+ D  ++ K + L  HSE+LA+A G+L   PG PIR+ KNLRVC D
Sbjct: 756 IKAMGYVPE-TNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGD 814

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH     IS+I + EI+VRD +RFHHFK+GSCSC  YW
Sbjct: 815 CHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 192/403 (47%), Gaps = 75/403 (18%)

Query: 77  FASFADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMI-----EQ 128
           ++    L+ A  +F +I      +  +WN+++ A  +S +A   A+ LF +M      + 
Sbjct: 162 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAW-TALDLFSKMTLIVHEKP 220

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            N   D  +    L AC  L A  Q K+ H +  + G   DV++ N+LI  YA CG ++ 
Sbjct: 221 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 280

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--------------------- 227
           A KVF+ M  + +VSWN M+  + Q G F +A +LF+ M                     
Sbjct: 281 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 340

Query: 228 ------------QILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT- 271
                       Q++F    P+  T  S+ SACA L   S GM  HAY L++C  +L   
Sbjct: 341 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 400

Query: 272 ------DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAA 323
                 D++V N+LIDMY KC S   AR +F+ +P  +R++ +W  +I G A +G +  A
Sbjct: 401 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 460

Query: 324 LKYFDRLVVEE-SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--- 379
           LK F  ++ E    +PN+ T   +L AC H   +  G+      I+ Y    VL H+   
Sbjct: 461 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-----IHAY----VLRHHQYD 511

Query: 380 -------GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                   CL+++ ++ G++D A H+  +M  K  A+ W S++
Sbjct: 512 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMM 553



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 145/294 (49%), Gaps = 16/294 (5%)

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           DYA  V  ++    +  WN LIR   +       AI +  RM+  G  L D  T P  LK
Sbjct: 68  DYALLVLERVTPSPAVWWNLLIREHIKQ-GRLDSAINVSCRMLRAGTRL-DHFTLPHVLK 125

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL-- 201
           AC  L ++  G   H  I   G  S+V+I N+L+  Y+ CG L+ A+ +FD + +R +  
Sbjct: 126 ACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDD 185

Query: 202 -VSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSACAGLATLSL 253
            +SWN ++ A V+     +AL LF +M ++          D  +  +I  AC  L  +  
Sbjct: 186 VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQ 245

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
               H   +R   +    DV V N+LID Y KCG ++ A +VF  M  +D+ SWN+++ G
Sbjct: 246 TKEVHGNAIR---NGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 302

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           ++  G  +AA + F  +  +E+   + +T+  V++  + RG   E  + F  MI
Sbjct: 303 YSQSGNFKAAFELFKNM-RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/588 (38%), Positives = 345/588 (58%), Gaps = 19/588 (3%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD----YAF 87
           +L   ++ C +M  L   +Q+H+QA+R  L        +   +I+  +   +D     A 
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDR---CVGCCLINMYAKCSVDGSMCAAR 329

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           ++F QI + N F+W  +I    +      +A+ LF+ MI   +V+P+  TF   LKACA 
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILT-HVIPNHFTFSSTLKACAN 388

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L A   G+Q   H  K G  S   + NSLI  YA  G +D A K FD + E++L+S+N +
Sbjct: 389 LAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTV 448

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           IDA+ +    + AL+LF  ++        +TF S+ S  A + T+  G   HA +++   
Sbjct: 449 IDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-- 506

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  +  V N+LI MY +CG+++ A QVFE M  R++ SW SII GFA HG A  AL+ 
Sbjct: 507 -GLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALEL 565

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F +++ EE   PN +T++ VLSAC+H G+V+EG  +F  M  E+ + P +EHY C+VD+L
Sbjct: 566 FHKML-EEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDIL 624

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G++ EA+  +++MP K DA++WR+ L A C+ H ++ L +  AK +IE E       
Sbjct: 625 GRSGSLSEAIQFINSMPYKADALVWRTFLGA-CRVHGNLELGKHAAKMIIEQEPHD-PAA 682

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS +YAS  +W++V  +RK M +K + KE GCS +E++   H+F+ GDTSHP+  +I
Sbjct: 683 YILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEI 742

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L  +  K+K  GY P+     + D  ++ K+  L  HSE++A+A G+++     PIR
Sbjct: 743 YDELQNLSVKIKKLGYVPNL-DFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIR 801

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VFKNLR+C DCH   K IS     EIIVRD  RFHH KDG CSC +YW
Sbjct: 802 VFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 182/366 (49%), Gaps = 22/366 (6%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  AF+VF ++   N+ TW  +I    +      +AI LF  MI  G   PD+ T   
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQ-FGYAGEAIDLFLDMIFSG-YEPDRFTLSG 276

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNML 197
            + ACA +     G+Q H+   + GL  D  +   LI+ YA C   G +  A K+FD +L
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 198 ERSLVSWNVMIDAFVQFGEFD-SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG- 254
           + ++ SW  MI  +VQ G +D  AL LFR M +    P+ +TF S   ACA LA L +G 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 255 -MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
            ++ HA  L     + V      NSLI MY + G +D AR+ F+ + +++L S+N++I  
Sbjct: 397 QVFTHAVKLGFSSVNCVA-----NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A +  +E AL+ F+  + ++    ++ TF  +LS     G + +G      +I      
Sbjct: 452 YAKNLNSEEALELFNE-IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS---G 507

Query: 374 PVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
             L    C  L+ + +R GNI+ A  +  +M  + + + W S++     KH     + E+
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFA-KHGFATQALEL 565

Query: 432 AKQVIE 437
             +++E
Sbjct: 566 FHKMLE 571



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 126/274 (45%), Gaps = 10/274 (3%)

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F    NPN  T   LI+        K  AI   + M+ QG+  PD  T+   LK C    
Sbjct: 25  FPTFTNPNPLT-GRLIQEINNGRLHK--AISTLEHMVHQGS-HPDLQTYSLFLKKCIRTR 80

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMI 208
           +F  G   H  + +  L  D    NSLI  Y+ CG  + A  +F  M   R L+SW+ M+
Sbjct: 81  SFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMV 140

Query: 209 DAFVQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F      F + L     ++  + P+ Y F + T AC+    +S+G     ++++    
Sbjct: 141 SCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIK--TG 198

Query: 268 SLVTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
            L +DV V   LIDM+ K  G L  A +VFE MP+R+  +W  +I      G A  A+  
Sbjct: 199 YLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDL 258

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           F  ++    + P+  T  GV+SAC +  ++  G+
Sbjct: 259 FLDMIF-SGYEPDRFTLSGVISACANMELLLLGQ 291



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 15/189 (7%)

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           PD  T+      C    +  +G   H  + +     L  D +  NSLI +Y KCG  + A
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQS---DLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 293 RQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
             +F  M   RDL SW++++  FA +     AL  F  ++ E  + PN   F     AC+
Sbjct: 121 TSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMI-ENGYYPNEYCFAAATRACS 179

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEH---YGC-LVDLLARA-GNIDEALHLVSNMPMKP 406
               VS G   F  +I     T  L+     GC L+D+  +  G++  A  +   MP + 
Sbjct: 180 TAEFVSVGDSIFGFVIK----TGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPER- 234

Query: 407 DAVIWRSLL 415
           +AV W  ++
Sbjct: 235 NAVTWTLMI 243



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 124/288 (43%), Gaps = 43/288 (14%)

Query: 20  IFNNNRNEG---SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +FN   ++G   S    +SLLS      ++ + +QIHA+ +++ L       +  + I  
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQS--VCNALISM 521

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++   +++ AF+VF  +E+ N  +W ++I   A+   A  QA+ LF +M+E+G V P++ 
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA-TQALELFHKMLEEG-VRPNEV 579

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L AC+++                GLV     N    HF +    +   + V   M
Sbjct: 580 TYIAVLSACSHV----------------GLV-----NEGWKHFKS----MYTEHGVIPRM 614

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
                  +  ++D   + G    A++    M   ++ D   +++   AC     L LG  
Sbjct: 615 EH-----YACIVDILGRSGSLSEAIQFINSMP--YKADALVWRTFLGACRVHGNLELGKH 667

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           A   I+    H     +L++N    +Y      D    + ++M ++ L
Sbjct: 668 AAKMIIEQEPHDPAAYILLSN----LYASISKWDEVSNIRKAMKEKXL 711


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/584 (38%), Positives = 346/584 (59%), Gaps = 15/584 (2%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           ++L+ L  C   S+L   K++H  + R  L  Q   L+  + I  +     L  + RVF 
Sbjct: 309 TILNVLPVCLERSELQSLKELHGYSWRHGL--QSNELVANAFIAAYTRCGALCSSERVFD 366

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            ++     +WN L+   A++ D + +A+ L+ +M + G + PD  T    L AC+ + + 
Sbjct: 367 LMDTKTVSSWNALLCGYAQNSDPR-KALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSL 424

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G++ H    + GL  D +I  SL+  Y  CG    A  +FD M  RSLVSWNVMI  +
Sbjct: 425 HYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGY 484

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G  D A+ LFR+M     +P       +  AC+ L+ L LG   H + L+     L 
Sbjct: 485 SQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA---HLT 541

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            D+ V++S+IDMY K G + +++++F+ + ++D+ SWN II G+ +HGR + AL+ F+++
Sbjct: 542 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 601

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +      P+  TF G+L AC+H G+V +G +YF+ M+N +NI P LEHY C+VD+L RAG
Sbjct: 602 L-RLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAG 660

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ID+AL L+  MP  PD+ IW SLL +C + H ++ L E+VA +++E E       YVL+
Sbjct: 661 RIDDALRLIEEMPGDPDSRIWSSLLSSC-RIHGNLGLGEKVANKLLELEPEKPEN-YVLI 718

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S ++A + +W+DV  VR  M D G+ K+ GCS IE+ G  H F  GD   P+ +++    
Sbjct: 719 SNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETW 778

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             ++ K+ S GYTPD + + + D  ++ K   LR HSE+LAI+ G+LN   G+P+RV+KN
Sbjct: 779 RRLEVKISSIGYTPD-TGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKN 837

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C DCH   K IS++ N +I+VRD  RFHHF+DG CSC DYW
Sbjct: 838 LRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 157/323 (48%), Gaps = 11/323 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR-VFYQIE 94
           LL +  + K +   +++H     +A  Q     ++ +RII   S        R VF ++ 
Sbjct: 4   LLQACGQRKDIEVGRRLHEMV--SASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 61

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             N F WN ++ A  R+ +    A+ +F  +I      PD  T P  +KACA L     G
Sbjct: 62  RKNLFQWNAIVSAYTRN-ELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H    K  LVSDV++ N+LI  Y  CG ++ A KVF++M ER+LVSWN +I  F + 
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 215 GEFDSALKLFRRMQI---LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           G    +   FR M +    F PD  T  ++   CAG   +  GM  H   ++     L  
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVK---LGLNE 237

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +++VNNSLIDMY KC  L  A+ +F+   K+++ SWNS+I G+A             ++ 
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297

Query: 332 VEES-FSPNSITFVGVLSACNHR 353
            E++    +  T + VL  C  R
Sbjct: 298 TEDAKMKADEFTILNVLPVCLER 320



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 141/278 (50%), Gaps = 9/278 (3%)

Query: 142 LKACAYLFAFSQGKQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           L+AC        G++ H  +       +D  +N  +I  Y+ CG    +  VFD +  ++
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAH 258
           L  WN ++ A+ +   F+ A+ +F  +  + E  PD +T   +  ACAGL  L LG   H
Sbjct: 65  LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
               +     LV+DV V N+LI MY KCG ++ A +VFE MP+R+L SWNSII GF+ +G
Sbjct: 125 GMATKM---DLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 319 RAEAALKYF-DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
             + +   F + LV EESF P+  T V VL  C     + +G     + + +  +   L 
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAV-KLGLNEELM 240

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               L+D+ ++   + EA  L+ +   K + V W S++
Sbjct: 241 VNNSLIDMYSKCRFLSEA-QLLFDKNDKKNIVSWNSMI 277



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 14/387 (3%)

Query: 34  SSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRV 89
           ++L++ L  C     +++   +H  A++  L ++   L++ + +I   S    L  A  +
Sbjct: 205 ATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE---LMVNNSLIDMYSKCRFLSEAQLL 261

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F + +  N  +WN++I   AR  D      +L +   E   +  D+ T    L  C    
Sbjct: 262 FDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERS 321

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
                K+ H + ++ GL S+  + N+ I  Y  CG L  + +VFD M  +++ SWN ++ 
Sbjct: 322 ELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLC 381

Query: 210 AFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + Q  +   AL L+ +M     +PD +T  S+  AC+ + +L  G   H + LR   + 
Sbjct: 382 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR---NG 438

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L  D  +  SL+ +Y  CG    A+ +F+ M  R L SWN +I G++ +G  + A+  F 
Sbjct: 439 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF- 497

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R ++ +   P  I  + V  AC+    +  G++     +  + +T  +     ++D+ A+
Sbjct: 498 RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAK 556

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G I  +  +   +  K D   W  ++
Sbjct: 557 GGCIGLSQRIFDRLREK-DVASWNVII 582


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/638 (37%), Positives = 358/638 (56%), Gaps = 46/638 (7%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL 61
           A   ++  P T + H ++I N    +    N  +L+ +  +C  M         A++   
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMEN-------AVKVFN 179

Query: 62  PQQHKTLLIYSRII-HFASFADLDYAFRVFYQIENPN----SFTWNTLI-----RACARS 111
             + K ++ ++ ++  ++   +   AF +F  +   N      TW  +I     R C+  
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH- 238

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--- 168
                +A+ +F++MI  G+ LP+  T    L ACA L AFSQG + HA+  K  L++   
Sbjct: 239 -----EALNVFRQMIFSGS-LPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 292

Query: 169 -------DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDS 219
                  D+ + N+LI  Y+ C     A  +FD+  + ER++V+W VMI    Q+G+ + 
Sbjct: 293 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 352

Query: 220 ALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           ALKLF  M        P+ YT   I  ACA LA + +G   HAY+LRH  +   +   V 
Sbjct: 353 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD-SSAYFVA 411

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N LI+MY KCG +D AR VF+SM ++   SW S++ G+ +HGR   AL  FD++  +  F
Sbjct: 412 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR-KAGF 470

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ ITF+ VL AC+H GMV +G  YFD M  +Y +TP  EHY   +DLLAR G +D+A 
Sbjct: 471 VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAW 530

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             V +MPM+P AV+W +LL AC + H++V L+E    +++E       G Y L+S +YA+
Sbjct: 531 KTVKDMPMEPTAVVWVALLSAC-RVHSNVELAEHALNKLVEMNAE-NDGSYTLISNIYAT 588

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW DV  +R LM   G+ K PGCS ++       FF GD SHP + QIY  L+ + ++
Sbjct: 589 AGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDR 648

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +K+ GY P+ +  A+ D  ++ K + L  HSE+LA+A G+L   PG PIR+ KNLRVC D
Sbjct: 649 IKAMGYVPE-TNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGD 707

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH     IS+I + EI+VRD +RFHHFK+GSCSC  YW
Sbjct: 708 CHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 192/403 (47%), Gaps = 75/403 (18%)

Query: 77  FASFADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMI-----EQ 128
           ++    L+ A  +F +I      +  +WN+++ A  +S +A   A+ LF +M      + 
Sbjct: 55  YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAW-TALDLFSKMTLIVHEKP 113

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            N   D  +    L AC  L A  Q K+ H +  + G   DV++ N+LI  YA CG ++ 
Sbjct: 114 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--------------------- 227
           A KVF+ M  + +VSWN M+  + Q G F +A +LF+ M                     
Sbjct: 174 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 233

Query: 228 ------------QILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT- 271
                       Q++F    P+  T  S+ SACA L   S GM  HAY L++C  +L   
Sbjct: 234 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 293

Query: 272 ------DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAA 323
                 D++V N+LIDMY KC S   AR +F+ +P  +R++ +W  +I G A +G +  A
Sbjct: 294 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 353

Query: 324 LKYFDRLVVEE-SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--- 379
           LK F  ++ E    +PN+ T   +L AC H   +  G+      I+ Y    VL H+   
Sbjct: 354 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-----IHAY----VLRHHQYD 404

Query: 380 -------GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                   CL+++ ++ G++D A H+  +M  K  A+ W S++
Sbjct: 405 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMM 446



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 15/253 (5%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M+  G  L D  T P  LKAC  L ++  G   H  I   G  S+V+I N+L+  Y+ CG
Sbjct: 1   MLRAGTRL-DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 59

Query: 185 HLDLANKVFDNMLERSL---VSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPD 234
            L+ A+ +FD + +R +   +SWN ++ A V+     +AL LF +M ++          D
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
             +  +I  AC  L  +      H   +R   +    DV V N+LID Y KCG ++ A +
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIR---NGTFLDVFVGNALIDAYAKCGLMENAVK 176

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VF  M  +D+ SWN+++ G++  G  +AA + F  +  +E+   + +T+  V++  + RG
Sbjct: 177 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNM-RKENIPLDMVTWTAVIAGYSQRG 235

Query: 355 MVSEGRDYFDVMI 367
              E  + F  MI
Sbjct: 236 CSHEALNVFRQMI 248


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 345/603 (57%), Gaps = 42/603 (6%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           ++ +LKQIH Q +   L    + L  +   I   +  +L Y+ ++  Q   P  F  N++
Sbjct: 21  TLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSM 80

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           IRA ++S+    ++   + ++++  +V+ PD +TF F ++ CA   A   G   H  + K
Sbjct: 81  IRAYSKSLTPH-KSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQS-ACEAGPAVHGALIK 138

Query: 164 RGLVSDVYINNSLIHFYAS-------------------------------CGHLDLANKV 192
            G   D ++ + LI  YA                                CG +  A  +
Sbjct: 139 HGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNL 198

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATL 251
           FD+M +R  VSWN MI  + Q G+   AL LF+ MQ+   + +  +  S+ +AC  L  L
Sbjct: 199 FDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGAL 258

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             G WAHAYI ++    +   V +  +L+DMY KCG++D A +VF  M ++++ +W++ I
Sbjct: 259 DQGKWAHAYIEKN---KIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAI 315

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G A++G  +  L+ F   +  E  +PN ITF+ VL  C+  G V EGR +FD M  ++ 
Sbjct: 316 GGLAMNGYGQKCLELFS-FMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHG 374

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P LEHYGC+VDL  RAG ++EAL+ ++ MP+KP A  W +LL+AC + + ++ L E  
Sbjct: 375 IEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNAC-RMYKNMELGEFA 433

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           ++++IE EG    G YV LS +YA    W+ V  VR+ M  +G++K PGCS +E++G  H
Sbjct: 434 SRKLIEVEGK-NHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVH 492

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
           EFF+GD SHP    I      I ++LK  GY    + + + D  ++ K+ +L  HSE++A
Sbjct: 493 EFFSGDKSHPSYDVIETMWGEISKRLKLAGYVAS-TNSVLFDIEEEEKEDALCKHSEKMA 551

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA G+ +LK G+PIR+ KNLR+C DCH+V+K+IS+IF  EIIVRDR RFHHFKDG CSC 
Sbjct: 552 IAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCK 611

Query: 612 DYW 614
           D+W
Sbjct: 612 DFW 614


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 353/604 (58%), Gaps = 17/604 (2%)

Query: 16  HSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYS 72
            S  +F+  R  G   N+ +  S L  C  +      K +H  A +T+  ++   L +  
Sbjct: 229 ESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE---LFVGV 285

Query: 73  RIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
            +I  +    D+D A +VF ++   +   W+ +I   A+S +   +AI +F RM  +G V
Sbjct: 286 ELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQS-EQSEEAIEMFCRM-RRGLV 343

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           LP++ T    L+ACA L     G Q H H+ K GL  +V+++N+L+  YA CG ++ + +
Sbjct: 344 LPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQ 403

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           +F      + VSWN +I  +VQ G  + AL LF+ M +   +    T+ S+  ACAG+A 
Sbjct: 404 LFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAA 463

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   H+  ++        + +V N+LIDMY KCG++  AR VF+ + + D  SWN++
Sbjct: 464 LEPGSQIHSLSVKTIYDK---NTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAM 520

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+++HG    ALK F+ ++ E    P+ +TFVG+LSAC++ G++  G+ YF  M+ EY
Sbjct: 521 ISGYSVHGLYGEALKTFESML-ETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEY 579

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
           +I P  EHY C+V LL R+G++D+A  LV  +P +P  ++WR+LL AC   H  V L   
Sbjct: 580 DIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVI-HNDVELGRI 638

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            A++V+E E       +VLLS +YA+ARRW +V  +R  M  KG+ KEPG S IE  G  
Sbjct: 639 SAQRVLEIEPED-EATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRV 697

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F  GDTSHP TK I G L+ ++ K ++ GY PD+S + ++D  D  K+  L +HSERL
Sbjct: 698 HYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFS-SVLLDVEDVDKEQRLWVHSERL 756

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A G++      P+R+ KNLR+C DCH   KLIS+I   +II+RD  RFHHF +G CSC
Sbjct: 757 ALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSC 816

Query: 611 MDYW 614
            DYW
Sbjct: 817 GDYW 820



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 177/351 (50%), Gaps = 31/351 (8%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +  +  L  A ++F ++ + N+ ++ TLI+  ++ +    +AI LF R+  +G+ L +  
Sbjct: 89  YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFS-EAIGLFSRLQGEGHEL-NPF 146

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
            F   LK          G   HA ++K G  SD ++  +LI  Y+ CG+ + A +VFD +
Sbjct: 147 VFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAI 206

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             + +VSW  M+  +V+   F+ +LKLF RM+I+ F+P+ +TF S+  AC GL   ++G 
Sbjct: 207 EYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGK 266

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H    +    S + ++ V   LID+Y K G +D A QVFE MPK D+  W+ +I  +A
Sbjct: 267 AVHGCAFK---TSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYA 323

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN-----------HRGMVSEGRDYFD 364
              ++E A++ F R+       PN  T   +L AC            H  +V  G D  +
Sbjct: 324 QSEQSEEAIEMFCRM-RRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLD-MN 381

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V ++             L+D+ A+ G ++ +L L S  P   D V W +++
Sbjct: 382 VFVS-----------NALMDMYAKCGRMENSLQLFSESPNCTD-VSWNTVI 420



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 19/316 (6%)

Query: 133 PDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           P+ +T+ +   L++C      + GK  H  I K+G   D++ NN L++FY     L  A 
Sbjct: 40  PEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAA 99

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLA 249
           K+FD M +R+ VS+  +I  + Q   F  A+ LF R+Q    E + + F ++        
Sbjct: 100 KLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAE 159

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
              LG   HA + +       +D  V  +LID Y  CG  + ARQVF+++  +D+ SW  
Sbjct: 160 WAKLGFSVHACVYK---LGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTG 216

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           ++  +  +   E +LK F R+ +   F PN+ TF  VL AC    + + G+         
Sbjct: 217 MVACYVENECFEESLKLFSRMRI-VGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFK- 274

Query: 370 YNITPVLEHYGC---LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
              T  LE       L+DL  ++G++D+AL +   MP K D + W  ++     ++A   
Sbjct: 275 ---TSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMI----ARYAQSE 326

Query: 427 LSEEVAKQVIESEGGI 442
            SEE  +       G+
Sbjct: 327 QSEEAIEMFCRMRRGL 342


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/654 (38%), Positives = 357/654 (54%), Gaps = 84/654 (12%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQ 92
           S L  SL  CK+++QLKQ+H Q  +  L Q   TL  + +     AS   LDYA + F  
Sbjct: 26  SCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFEL 85

Query: 93  I-ENPNS----FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
             E+  S    F  N+LIR  + S     +AI+L+ RM+  G V P+ +TFPF L  C  
Sbjct: 86  FKEDVRSDDALFMLNSLIRGYS-SAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTK 143

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW--- 204
           + AF +G Q H  + K GL  DV+I N LIHFYA CGH+D  +KVF+ M ER++VSW   
Sbjct: 144 IAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSL 203

Query: 205 --------------------------NVMIDAFVQFGEFDSALKLF-------------- 224
                                     N ++D +++ G  D+A +LF              
Sbjct: 204 ICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTI 263

Query: 225 -----------RRMQILFE-------PDGYTFQSITSACAGLATLSLG-----MWAHAYI 261
                        + IL E       PD  T  S  SA A L  L  G      W H YI
Sbjct: 264 LSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYI 323

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            ++    +  D+ +N +L+DM+ +CG    A QVF  M +RD+++W + I   A+ G  E
Sbjct: 324 EKN---GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGE 380

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A   F++++++    P+ + FV VL+AC+H G V +G   F +M  ++ I+P +EHYGC
Sbjct: 381 GATGLFNQMLIQ-GVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGC 438

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDLL RAG + EA  L+ +MPM+P+ V+W SLL A C+ H +V ++   A+++ E    
Sbjct: 439 MVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL-AACRVHKNVEMATYAAERINELAPQ 497

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             +GV+VLLS +YASA +W DV  VR  + +KGV K PG SS++++G+ HEF +GD SHP
Sbjct: 498 R-AGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHP 556

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLK 560
           +   I   L  ++ +    G+ PD S   + VDE +  K+  L  HSE+LAIA G++   
Sbjct: 557 EMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQE--KEYLLSRHSEKLAIAFGLIATG 614

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             MPIRV KNLR+C DCH   K+ S I+N EIIVRD  RFH F+ G CSC DYW
Sbjct: 615 RSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 343/584 (58%), Gaps = 18/584 (3%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            +S L+   +   ++ + K++H          + K  ++ + +  +  F  L+ A  +F 
Sbjct: 57  TYSELIKCCSARGAVQEGKRVHEHIFCKGY--EPKMFVVNTLLNMYVKFNLLEEAEDLFD 114

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   N  +W T+I A +  ++ K    ++   M  +G V P+  T+   L+AC  L   
Sbjct: 115 EMPERNVVSWTTMISAYSNKLNDKALKCLIL--MFREG-VRPNMFTYSSVLRACDGLPNL 171

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
              +Q H  I K GL SDV++ ++LI  Y+    LD A  VFD M  R LV WN +I  F
Sbjct: 172 ---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGF 228

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  + + AL LF+RM+   F  D  T  S+  AC GLA L LG   H ++L+       
Sbjct: 229 AQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK-----FD 283

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            D+++NN+LIDMYCKCGSL+ A   F  M ++D+ SW++++ G A +G +  AL+ F+ +
Sbjct: 284 QDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESM 343

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             E    PN IT +GVL AC+H G+V +G  YF  M   + + P  EHYGCL+DLL RAG
Sbjct: 344 K-ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAG 402

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            +DEA+ L+  M  +PD+V WR+LL AC + H +V L+   AK++IE E    +G Y+LL
Sbjct: 403 RLDEAVKLIHEMECEPDSVTWRTLLGAC-RVHRNVDLAIYAAKKIIELEPED-AGTYILL 460

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+ +RW DV  VRK MT++G+ K PGCS IE+D   H F  GDTSHP+ ++I   L
Sbjct: 461 SNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRL 520

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + + E++   GY PD +   + D   + K+ SLR HSE+LAI  G++NL     +R+ KN
Sbjct: 521 NDLIERVMGVGYVPD-TNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKN 579

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C DCH   K++SR+ +  I++RD  R+HHF+DG CSC DYW
Sbjct: 580 LRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 150/294 (51%), Gaps = 19/294 (6%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E+  V  D  T+   +K C+   A  +GK+ H HIF +G    +++ N+L++ Y     
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK----LFRRMQILFEPDGYTFQSI 241
           L+ A  +FD M ER++VSW  MI A+      D ALK    +FR       P+ +T+ S+
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLN-DKALKCLILMFREG---VRPNMFTYSSV 161

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             AC GL  L      H  I++     L +DV V ++LID+Y K   LD A  VF+ MP 
Sbjct: 162 LRACDGLPNLRQ---LHCGIIK---TGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPT 215

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RDL  WNSII GFA +     AL  F R+     F  +  T   VL AC    ++  GR 
Sbjct: 216 RDLVVWNSIIGGFAQNSDGNEALNLFKRM-KRAGFLADQATLTSVLRACTGLALLELGRQ 274

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              V + +++   +L +   L+D+  + G++++A    S M ++ D + W +++
Sbjct: 275 -VHVHVLKFDQDLILNN--ALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMV 324



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 17/312 (5%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDY 85
           EG   N  +  S L  C  +  L+Q+H   ++T L      + + S +I  ++ ++DLD 
Sbjct: 149 EGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESD---VFVRSALIDVYSKWSDLDN 205

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF ++   +   WN++I   A++ D   +A+ LF+RM   G  L D+ T    L+AC
Sbjct: 206 ALGVFDEMPTRDLVVWNSIIGGFAQNSDGN-EALNLFKRMKRAG-FLADQATLTSVLRAC 263

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             L     G+Q H H+ K     D+ +NN+LI  Y  CG L+ AN  F  M+E+ ++SW+
Sbjct: 264 TGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWS 321

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            M+    Q G    AL+LF  M +    P+  T   +  AC+    +  G W   Y  R 
Sbjct: 322 TMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKG-W---YYFRS 377

Query: 265 CDHSLVTDVLVNN--SLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
                  D    +   LID+  + G LD A ++   M  + D  +W +++    +H   +
Sbjct: 378 MKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVD 437

Query: 322 AALKYFDRLVVE 333
            A+ Y  + ++E
Sbjct: 438 LAI-YAAKKIIE 448


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/587 (39%), Positives = 341/587 (58%), Gaps = 15/587 (2%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  ++L+ L  C  +SQL   K++H  ++R     Q+  L+    +  +A    L  A R
Sbjct: 235 NEVTVLNILPACLEISQLRSLKELHGYSIRHGF--QYDELVANGFVAAYAKCGMLICAER 292

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VFY +E     +WN LI  CA++ D + +A+ L+ +M   G ++PD  T    L A A+L
Sbjct: 293 VFYSMETKTVNSWNALIGGCAQNGDPR-KALNLYIQMTYSG-LVPDWFTIGSLLLASAHL 350

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +   GK+ H  + + GL  D +I  SL+  Y  CG    A  +FD M E+S VSWN MI
Sbjct: 351 KSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMI 410

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G  + AL LFR++    F+P      S+  AC+  + L LG   H Y L+    
Sbjct: 411 SGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKAL-- 468

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L+ DV V  S IDMY K G +  +R VF+ +  +DL SWN+II  + +HG  E +++ F
Sbjct: 469 -LMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELF 527

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           +R+  +    P+  TF+G+L+ C+H G+V EG  YF+ M N + I P LEHY C++D+L 
Sbjct: 528 ERMR-KVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLG 586

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +D+AL LV  MP +PD+ +W SLL + C+    + + + VA++++E E       Y
Sbjct: 587 RAGRLDDALRLVHEMPEQPDSRVWSSLL-SFCRNFGELEIGQIVAEKLLELEPKNVEN-Y 644

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           V LS +YA + RW+DV  VR+++ D G+ K+ GCS IE+ G  H F AGD   PQ+K++ 
Sbjct: 645 VSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMS 704

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
                +++K+   GY P+ S A + D  ++ K   LR HSE+LAI  G+LN   G  +R+
Sbjct: 705 MTWRKLEKKMCKIGYKPNTS-AVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRI 763

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           FKNLR+C DCH  +K +S +   EII+RD  RFHHFKDG CSC DYW
Sbjct: 764 FKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +  F  +D A +VF+ +   N  +WN++I   + +  +K    +L + M  +  +LP
Sbjct: 73  IAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP 132

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  T    L  CA       G + H    K GL  DV +NNSL+  Y+ CG+L  A  +F
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATL 251
           D    ++ VSWN MI      G    A  LFR MQ+    E +  T  +I  AC  ++ L
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                 H Y +R   H    D LV N  +  Y KCG L  A +VF SM  + + SWN++I
Sbjct: 253 RSLKELHGYSIR---HGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALI 309

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
            G A +G    AL  + ++       P+  T   +L A  H   +  G++
Sbjct: 310 GGCAQNGDPRKALNLYIQMTY-SGLVPDWFTIGSLLLASAHLKSLRYGKE 358



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           AI +F ++I       D  TFP  +KAC        G+  H  + K GL+ DV++ N+LI
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE----FDSALKLFRRMQILFEP 233
             Y   G +D A KVF  M  R+LVSWN +I  F + G     FD  +++    + L  P
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL-P 132

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D  T  ++   CA    + +G+  H   ++     L  DV VNNSL+DMY KCG L  A+
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVK---LGLSEDVRVNNSLVDMYSKCGYLTEAQ 189

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            +F+   +++  SWN++I G    G    A   F  + ++E    N +T + +L AC
Sbjct: 190 MLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/587 (40%), Positives = 343/587 (58%), Gaps = 13/587 (2%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRV 89
           NN++++L S    +++   +Q+HA+ L + L       ++ +R++  +AS   +  A R+
Sbjct: 64  NNYATILRSCVLSRAVRPGRQLHARLLVSGLGLD---AVLATRLVDLYASCGLVSVARRL 120

Query: 90  FYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           F ++ N  N F WN LIRA AR    +  AI L++ M+  G++ PD  T+P  LKACA L
Sbjct: 121 FDEMPNQGNVFLWNVLIRAYARD-GPREAAIELYREMLACGSMEPDNFTYPPVLKACAAL 179

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G++ H  + +    +DV++   LI  YA CG +D A  VFD+   R  V WN MI
Sbjct: 180 LDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMI 239

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A  Q G    AL L R M      P   T  S  SA A    L  G   H Y  R    
Sbjct: 240 AACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRR--- 296

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
              +   +  SL+DMY K G + +AR +F+ +  R+L SWN++I GF +HG A+ A + F
Sbjct: 297 GFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELF 356

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            R+  E    P+ ITFVGVLSACNH GMV E ++ FD+M+  Y+I P+++HY CLVD+L 
Sbjct: 357 RRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLG 416

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
            +G   EA  ++  M +KPD+ IW +LL+  CK H +V L+E    ++IE E    +G Y
Sbjct: 417 HSGRFKEASDVIKGMLVKPDSGIWGALLNG-CKIHKNVELAELALHKLIELEPED-AGNY 474

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA + +W +   VRKLMT++G+ K   CS IE+ G +H F  GD SHP++ +IY
Sbjct: 475 VLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIY 534

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L+ ++  +   GY PD +      E DD K++ +R HSERLAIA G+++  PG  + V
Sbjct: 535 EELERLEGLISQTGYVPDTTSVFHNVE-DDEKRNMVRGHSERLAIAFGLISTPPGTKLLV 593

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC+DCH V KLIS+I   EII+RD  R+HHF +G CSC D+W
Sbjct: 594 TKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/621 (38%), Positives = 348/621 (56%), Gaps = 55/621 (8%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----------LDYA 86
           L+ L  C S S LK IH   LRT L      + + SR++  A   D          L YA
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISD---VFVASRLLALALCVDDSTFHKPTNLLGYA 72

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
           + +F QI+NPN F +N LIR    S  A+P     F   + +  + PD  TFPF +KA  
Sbjct: 73  YGIFSQIQNPNLFVFNVLIRCF--STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKAST 130

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF------------- 193
            +     G+Q H+ I + G  +DVY+ NSL+H YA+CG +  A ++F             
Sbjct: 131 EMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTS 190

Query: 194 ------------------DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG 235
                             D M  R+L +W++MI+ + +   F+ A+ LF  M+       
Sbjct: 191 MVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVAN 250

Query: 236 YTFQ-SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            T   S+ S+CA L  L  G  AH Y+++     +  ++++  +L+DMY +CG ++ A +
Sbjct: 251 ETVMVSVISSCAHLGALEFGERAHEYVVKS---HMTVNLILGTALVDMYWRCGEIEKAIR 307

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VFE +P +D  SW+SII G A+HG A  A+ YF ++V    FSP  IT   VLSAC+H G
Sbjct: 308 VFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMV-RLGFSPRDITLTAVLSACSHGG 366

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V +G + ++ M  +Y I P LEHYGC+VD+L RAG + EA + +  MP+KP+A I  +L
Sbjct: 367 LVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGAL 426

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L AC K + +  ++E V   +IE +    SG YVLLS +YA A +W  +  +R +M +K 
Sbjct: 427 LGAC-KIYKNTEVAERVGNMLIEVKPE-HSGYYVLLSNIYACAGQWEKLESLRDIMKEKL 484

Query: 475 VTKEPGCSSIEIDGIAHEFFAGD-TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           V K PG S IEIDG  ++F  GD   HP+  +I    + I  K++  GY  + +  A  D
Sbjct: 485 VKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGN-TGDAFFD 543

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             ++ K++++ +HSE+LAIA G++  K G  IR+ KNLRVC+DCH  TKLIS ++  E I
Sbjct: 544 VDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFI 603

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           VRDR RFHHF++G CSC DYW
Sbjct: 604 VRDRNRFHHFRNGLCSCRDYW 624


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/605 (39%), Positives = 350/605 (57%), Gaps = 47/605 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S+L+   E  ++ + K I+ Q     +P++   +   S I+ F     +  A ++F ++
Sbjct: 283 NSILAGYIEIGNVEEAKHIYHQ-----MPER-SIIASNSMIVLFGMRGLVVEACKLFDEM 336

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +  TW+ LI AC +  +   +AI  F  M + G V+ D+     AL ACA L   + 
Sbjct: 337 LEKDMVTWSALI-ACFQQNEMYEEAIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNM 394

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK---------------------- 191
           GK  H+   K G  S + + N+LI+ Y+ CG + +A K                      
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 192 ---------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
                    +FD+M E+ +VSW+ MI  + Q   FD  L LF+ MQ+  F+PD  T  S+
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA LA L  G W HAYI R+    L  +V++  +LIDMY KCG ++ A +VF  M +
Sbjct: 515 ISACARLAALEQGKWVHAYIKRN---GLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 571

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           + +++WN++ILG A++G  E++L  F  +  +   +PN ITF+GVL AC H G+V EG+ 
Sbjct: 572 KGISTWNALILGLAMNGLVESSLDMFSNMK-KCHVTPNEITFMGVLGACRHMGLVDEGQH 630

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +F  MI+++ I P ++HYGC+VDLL RAG + EA  L++ MPM PD   W +LL A CKK
Sbjct: 631 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA-CKK 689

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H    +   V +++IE +     G +VLLS +YAS  +W+DV  +R +MT   V K PGC
Sbjct: 690 HGDSEMGRRVGRKLIELQPD-HDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 748

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S IE +G+ HEF AGD +HP    I   L  +  KLK  GYTPD ++  ++D  ++ K+S
Sbjct: 749 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINE-VLLDVDEEEKES 807

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +L  HSE+LAIA G++N+ P  PIR+ KNLR+C DCH   KLIS+ F  +I+VRDR RFH
Sbjct: 808 TLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFH 867

Query: 602 HFKDG 606
           HF+ G
Sbjct: 868 HFEQG 872



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 173/418 (41%), Gaps = 106/418 (25%)

Query: 96  PNSFTWNTLIRACARS---VDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAF 151
           P + TW    +A  R+    ++   A  L++ M+   N L  D +T+P  ++AC+   + 
Sbjct: 172 PQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLS--NYLGADNYTYPLLIQACSIRRSE 229

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            + KQ H H+ K G  SDVY+ N+LI+ ++ C ++  A +VF+       VSWN ++  +
Sbjct: 230 WEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGY 289

Query: 212 VQFGEFDSALKLFRRMQ-----------ILF-----------------EPDGYTFQSI-- 241
           ++ G  + A  ++ +M            +LF                 E D  T+ ++  
Sbjct: 290 IEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIA 349

Query: 242 ------------------------------TSACAGLATL---SLGMWAHAYILRHCDHS 268
                                          SA +  A L   ++G   H+  L+    S
Sbjct: 350 CFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTES 409

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQ-------------------------------VFE 297
            +    + N+LI MY KCG + +AR+                               +F+
Sbjct: 410 YIN---LQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 466

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
           SMP++D+ SW+S+I G+A +   +  L  F  + +   F P+  T V V+SAC     + 
Sbjct: 467 SMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM-SGFKPDETTLVSVISACARLAALE 525

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +G+ +    I    +T  +     L+D+  + G ++ AL +   M ++     W +L+
Sbjct: 526 QGK-WVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALI 581


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/608 (37%), Positives = 335/608 (55%), Gaps = 36/608 (5%)

Query: 35   SLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            +L S L  C  + +L+   +IH  ALR     ++ + +  + +  + +         VF 
Sbjct: 536  TLASVLPACSQLERLRIGREIHCYALRNGDLIEN-SFVGTALVDMYCNCKQPKKGRLVFD 594

Query: 92   QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
             +       WN L+   AR+ +   QA+ LF  MI +    P+  TF   L AC     F
Sbjct: 595  GVVRRTVAVWNALLAGYARN-EFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVF 653

Query: 152  SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            S  +  H +I KRG   D Y+ N+L+  Y+  G ++++  +F  M +R +VSWN MI   
Sbjct: 654  SDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGC 713

Query: 212  VQFGEFDSALKLFRRMQ-------------------ILFEPDGYTFQSITSACAGLATLS 252
            +  G +D AL L   MQ                   + F+P+  T  ++   CA LA L 
Sbjct: 714  IVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALG 773

Query: 253  LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
             G   HAY ++     L  DV V ++L+DMY KCG L++A +VF+ MP R++ +WN +I+
Sbjct: 774  KGKEIHAYAVKQ---KLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIM 830

Query: 313  GFALHGRAEAALKYFDRLVV-----EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
             + +HG+ E AL+ F  +        E   PN +T++ + +AC+H GMV EG   F  M 
Sbjct: 831  AYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMK 890

Query: 368  NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKKHASVV 426
              + + P  +HY CLVDLL R+G + EA  L++ MP   + V  W SLL AC + H SV 
Sbjct: 891  ASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGAC-RIHQSVE 949

Query: 427  LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
              E  AK +   E  + S  YVL+S +Y+SA  W+    VRK M + GV KEPGCS IE 
Sbjct: 950  FGEIAAKHLFVLEPNVASH-YVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEH 1008

Query: 487  DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
                H+F +GD SHPQ+K+++ +L+ + ++++  GY PD S   + +  D+ K++ L  H
Sbjct: 1009 GDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDIS-CVLHNVDDEEKETMLCGH 1067

Query: 547  SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
            SERLAIA G+LN  PG  IRV KNLRVC DCH  TK+IS+I + EII+RD  RFHHF +G
Sbjct: 1068 SERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANG 1127

Query: 607  SCSCMDYW 614
            +CSC DYW
Sbjct: 1128 TCSCGDYW 1135



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 179/372 (48%), Gaps = 11/372 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           KQIHA   +          +  S +  +    DL  A +VF  I + +  +WN++I    
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ-GKQAHAHIFKRGLVS 168
           R  +    ++ LF+ M+ + NV P   T      AC+++    + GKQ HA+  + G + 
Sbjct: 410 R-FEEWELSLHLFRLMLSE-NVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLR 467

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
             Y NN+L+  YA  G ++ A  +F     + LVSWN +I +  Q   F+ AL     M 
Sbjct: 468 -TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMI 526

Query: 229 I-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +    PDG T  S+  AC+ L  L +G   H Y LR+ D  L+ +  V  +L+DMYC C 
Sbjct: 527 VDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGD--LIENSFVGTALVDMYCNCK 584

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
                R VF+ + +R +  WN+++ G+A +   + AL+ F  ++ E  F PN+ TF  VL
Sbjct: 585 QPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVL 644

Query: 348 SACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
            AC    + S+       ++   +     +++   L+D+ +R G ++ +  +   M  K 
Sbjct: 645 PACVRCKVFSDKEGIHGYIVKRGFGKDKYVQN--ALMDMYSRMGRVEISKTIFGRMN-KR 701

Query: 407 DAVIWRSLLDAC 418
           D V W +++  C
Sbjct: 702 DIVSWNTMITGC 713



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 156/326 (47%), Gaps = 44/326 (13%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV--SDVYINNSLIHFYASCGHLDLANK 191
           D   FP  LKA A +     GKQ HAH+FK G    S V + NSL++ Y  CG L  A +
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL-A 249
           VFD++ +R  VSWN MI    +F E++ +L LFR M     +P  +T  S+  AC+ +  
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            + LG   HAY LR+ D    T    NN+L+ MY + G ++ A+ +F     +DL SWN+
Sbjct: 449 GVRLGKQVHAYTLRNGDLRTYT----NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNT 504

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF------ 363
           +I   + + R E AL Y   ++V +   P+ +T   VL AC+    +  GR+        
Sbjct: 505 VISSLSQNDRFEEALMYVYLMIV-DGVRPDGVTLASVLPACSQLERLRIGREIHCYALRN 563

Query: 364 -DVMINEYNITPVLEHY------------------------GCLVDLLARAGNIDEALHL 398
            D++ N +  T +++ Y                          L+   AR    D+AL L
Sbjct: 564 GDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRL 623

Query: 399 ----VSNMPMKPDAVIWRSLLDACCK 420
               +S     P+A  + S+L AC +
Sbjct: 624 FVEMISESEFCPNATTFASVLPACVR 649


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/619 (36%), Positives = 347/619 (56%), Gaps = 54/619 (8%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIE 94
           L+ ++ E +     K +H  A++T+       + + + +IHF AS   LD A+ VF  IE
Sbjct: 246 LIKAVAERRCFLVGKAVHGMAIKTSFGDD---VFVLNSLIHFYASCGHLDLAYLVFEMIE 302

Query: 95  --NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
             N +  +WN+++    +      +A+ LF+RM  +G V P+  T    + ACA     +
Sbjct: 303 GNNKDIVSWNSMVTGFVQG-GYPDKALDLFERMRNEG-VHPNAVTMVSVMSACAKTMNLT 360

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G++   +I +  ++ ++ + N+ I  +  CG +++A  +FDNM +R +VSW  +ID + 
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420

Query: 213 QFGE-------FDS------------------------ALKLFRRMQIL---FEPDGYTF 238
           +  E       FDS                        AL +FR +Q+      PD  T 
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTL 480

Query: 239 QSITSACAGLATLSLGMWAHAYILR---HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            S  SACA L  + +G W H YI +     + +L T      SLIDMY K G ++ A +V
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLAT------SLIDMYSKSGDVEKAIEV 534

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F S+  +D+  W+++I G A+HGR EAA++ F  +  E    PNS+TF  +L AC+H G+
Sbjct: 535 FHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQ-ETQVKPNSVTFTNLLCACSHSGL 593

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V EG+  FD M   Y + P  +HY C+VD+L RAG+++EAL  +  MP+ P A +W +LL
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALL 653

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            ACC  H ++ L+E+   +++E E G   G YVLLS +YA    W  V  +R+ M D G+
Sbjct: 654 GACCI-HGNLELAEKACSRLLEIEPG-NHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGL 711

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            KE GCSSIEIDG  HEF  GD +HP ++ IY  LD I  +L+S GY  +        E 
Sbjct: 712 KKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEE 771

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           ++ K+ +L+LHSE++AIA G++       IR+ KNLRVC+DCH V K++S+++  +I++R
Sbjct: 772 EEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLR 831

Query: 596 DRARFHHFKDGSCSCMDYW 614
           DR RFHHF  G CSC DYW
Sbjct: 832 DRYRFHHFSGGHCSCQDYW 850



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 233/449 (51%), Gaps = 58/449 (12%)

Query: 4   AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRT-ALP 62
           +IVQ   PTP + + +   +              +   +C S  QLKQIHAQ LRT  L 
Sbjct: 123 SIVQHSSPTPASATATNVGDR-------------ALFQQCTSFKQLKQIHAQMLRTNKLH 169

Query: 63  QQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
             +    +++    F+SF+ LDYA +VF QI  PN ++WN LIRA A S D   Q++++F
Sbjct: 170 DPYAASELFTAAA-FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDP-IQSVLVF 227

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
            RM+      P+K TFP  +KA A    F  GK  H    K     DV++ NSLIHFYAS
Sbjct: 228 IRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYAS 287

Query: 183 CGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
           CGHLDLA  VF+ M+E   + +VSWN M+  FVQ G  D AL LF RM+     P+  T 
Sbjct: 288 CGHLDLAYLVFE-MIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTM 346

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD-------- 290
            S+ SACA    L+LG     YI R   + ++ ++ V N+ IDM+ KCG ++        
Sbjct: 347 VSVMSACAKTMNLTLGRKVCDYIDR---NEMMMNLNVCNATIDMFVKCGEVEIARGLFDN 403

Query: 291 -----------------------IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
                                  IAR +F+SMP++D+ +WN +I G+   GR + AL  F
Sbjct: 404 MEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIF 463

Query: 328 DRLVVEESFS-PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
             L + +S + P+ +T +  LSAC   G +  G ++    I +  I         L+D+ 
Sbjct: 464 RELQLTKSGARPDQVTLLSTLSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMY 522

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +++G++++A+ +  ++  K D  +W +++
Sbjct: 523 SKSGDVEKAIEVFHSIGNK-DVFVWSAMI 550


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/587 (41%), Positives = 345/587 (58%), Gaps = 11/587 (1%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           S+++++S+L S    +S+   +Q+H + L + L     T+L    +  +A+   + +A R
Sbjct: 61  SYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPD--TVLATKLVDLYAACGLVGHARR 118

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F  +   N F WN LIRA AR       AI L++ M++ G V PD  T+P ALKACA L
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARD-GPHEVAIQLYRGMVDYG-VEPDNFTYPLALKACAAL 176

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G++ H  +       D+++   L+  YA CG +D A  VFD +  R  V WN MI
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A+ Q G    AL L R M      P   T  S  SA A  A L  G   H +  R    
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRR--- 293

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
                  +  SL+DMY K G + +AR +FE + KR+L SWN++I G+ +HG  + ALK F
Sbjct: 294 GFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLF 353

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           +++ VE   +P++ITFVGVLSACNH GMV E +++F +M++ Y+I P ++H+ CLVD+L 
Sbjct: 354 NKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLG 413

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
            AG  +EA  L+  MPM+PD+ IW +LL+  CK H +V L E   +++IE E    +G Y
Sbjct: 414 HAGRFEEAYDLIKGMPMQPDSGIWGALLNG-CKIHKNVELGELALQKLIELEPED-AGNY 471

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA + +W     VRKLMT++G+ K  GCS IE+ G  H F  GD SHP++ +IY
Sbjct: 472 VLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIY 531

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L+ ++  +   GY PD +     D  DD K++ +R HSERLAIA G+++   G  + V
Sbjct: 532 EELERLEGLMSDAGYMPD-TMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLV 590

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC+DCH V KLIS+I   EII+RD  R+HHF +G CSC DYW
Sbjct: 591 TKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 310/554 (55%), Gaps = 42/554 (7%)

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY-LFAFS 152
           E      WN LI    R      ++   F  M   G   P   T+   L AC        
Sbjct: 83  ECDTPVAWNALISGHNRG-GRFGESCGSFVDMARAGAA-PTPVTYVSVLSACGKGTRDVL 140

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASC----------------------------- 183
            G Q H  +   G++ D+ + N+L+  YA C                             
Sbjct: 141 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLA 200

Query: 184 --GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQS 240
             G +D A  +FD M ER  VSW  MID +V    F  AL++FR MQ      D +T  S
Sbjct: 201 RLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVS 260

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + +ACA L  L +G W   Y+ R     +  D  V N+LIDMY KCGS++ A  VF+ M 
Sbjct: 261 VITACAQLGALEMGEWVRVYMSRQ---GIKMDAFVGNALIDMYSKCGSIERALDVFKGMH 317

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            RD  +W +IILG A++G  E A++ F R++   S +P+ +TF+GVL+AC H G+V +GR
Sbjct: 318 HRDKFTWTAIILGLAVNGYEEEAIEMFHRMI-RVSETPDEVTFIGVLTACTHAGLVDKGR 376

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           ++F  MI  YNI P + HYGC++DLL RAG I EAL  +  MPM P++ IW +LL A C+
Sbjct: 377 EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLL-AACR 435

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H +  + E VA++++E +    S VY+LLS +YA   RW DV  +R  + +KG+ KEPG
Sbjct: 436 VHGNSEIGELVAERLLELDPE-NSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPG 494

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
           CS IE+DGI HEF AGD SHP +K+IY  L+ I   L + GY PD ++   V+  +  K+
Sbjct: 495 CSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTE-VFVEVAEKEKK 553

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
             L  HSE+LAIA  +L+ KP   IR+ KNLR+C DCH   KLISR++  E++VRDR RF
Sbjct: 554 KVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRF 613

Query: 601 HHFKDGSCSCMDYW 614
           HHF+ G CSC DYW
Sbjct: 614 HHFRHGFCSCKDYW 627



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 149/335 (44%), Gaps = 46/335 (13%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS----QGKQAHAHIFKRGLVSDVYIN 173
           A+  + RM+ +G   PD +TFP  LKA A     S      +  HAH+ + G+  + ++ 
Sbjct: 3   AVAGYARMLARGG-RPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFE 232
           +SL+  Y + G    A  +       + V+WN +I    + G F  +   F  M +    
Sbjct: 62  SSLVAAYTAGGDGAAARALVGEC--DTPVAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 233 PDGYTFQSITSACA-GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC----- 286
           P   T+ S+ SAC  G   + LGM  H  ++      ++ D+ V N+L+DMY +C     
Sbjct: 120 PTPVTYVSVLSACGKGTRDVLLGMQVHGRVV---GSGVLPDLRVENALVDMYAECADMGS 176

Query: 287 --------------------------GSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
                                     G +D AR +F+ MP+RD  SW ++I G+    R 
Sbjct: 177 AWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARF 236

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             AL+ F R +   + S +  T V V++AC   G +  G ++  V ++   I        
Sbjct: 237 REALEMF-REMQYSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGN 294

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L+D+ ++ G+I+ AL +   M  + D   W +++
Sbjct: 295 ALIDMYSKCGSIERALDVFKGMHHR-DKFTWTAII 328



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 42/311 (13%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ-------- 128
           +A  AD+  A++VF  ++  +  +W +L+   AR +    +A  LF RM E+        
Sbjct: 168 YAECADMGSAWKVFDGMQVRSVVSWTSLLSGLAR-LGQVDEARDLFDRMPERDTVSWTAM 226

Query: 129 ----------------------GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
                                  NV  D+ T    + ACA L A   G+    ++ ++G+
Sbjct: 227 IDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI 286

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
             D ++ N+LI  Y+ CG ++ A  VF  M  R   +W  +I      G  + A+++F R
Sbjct: 287 KMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHR 346

Query: 227 MQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYC 284
           M  + E PD  TF  + +AC     +  G     + L   + +++  +V+    +ID+  
Sbjct: 347 MIRVSETPDEVTFIGVLTACTHAGLVDKG---REFFLSMIEAYNIAPNVVHYGCIIDLLG 403

Query: 285 KCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
           + G +  A    + MP   + T W +++    +HG +E      +RL+  E    NS+ +
Sbjct: 404 RAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLL--ELDPENSMVY 461

Query: 344 V---GVLSACN 351
           +    + + CN
Sbjct: 462 ILLSNIYAKCN 472


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/599 (40%), Positives = 330/599 (55%), Gaps = 15/599 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH 76
           +F    +EG   N  + +  L  C S+S LK   ++HA      L    +      R+  
Sbjct: 116 LFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRM-- 173

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     ++ A R+F  + N +  +W  +I A A+S + K    ++ Q  +EQ    P+  
Sbjct: 174 YGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQ--MEQEGFKPNAI 231

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L ACA   A    K+ H H    GL  DV +  +L+  YA  G +D A  VFD M
Sbjct: 232 TYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRM 291

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             R +VSWNVMI AF + G    A  LF +MQ    +PD   F SI +ACA    L    
Sbjct: 292 KVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVK 351

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H + L   D  L  DV V  +L+ MY K GS+D AR VF+ M  R++ SWN++I G A
Sbjct: 352 KIHRHAL---DSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG  + AL+ F R+       P+ +TFV VLSAC+H G+V EGR  +  M   Y I P 
Sbjct: 409 QHGLGQDALEVFRRMTAH-GVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPD 467

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           + H  C+VDLL RAG + EA   + NM + PD   W +LL +C + + +V L E VAK+ 
Sbjct: 468 VSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSC-RTYGNVELGELVAKER 526

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           ++ +    +  YVLLS +YA A +W+ V  VR +M ++G+ KEPG S IE+D   H+F  
Sbjct: 527 LKLDPK-NAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLV 585

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D+SHP+ K+I    D + EK+K+ GY PD         + D K+  +  HSE+LAI  G
Sbjct: 586 ADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKD-KELDICSHSEKLAIVYG 644

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +++  PG PIRVFKNLRVC DCH  TKLIS++   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 645 LMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 166/313 (53%), Gaps = 16/313 (5%)

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ +   +AIV+    +++G ++ D   +   LK C         KQ H  I K  +  +
Sbjct: 4   QTANTLSEAIVVLMNRLQRG-LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQN 62

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-Q 228
            ++ N+L+H Y  CG L  A  VFD ++++S  SWN MI  +V+    + A++LFR M  
Sbjct: 63  AHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCH 122

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              +P+  T+  I  ACA L+ L  G   HA I RH    L +DV V  +L+ MY KCGS
Sbjct: 123 EGVQPNAGTYMIILKACASLSALKWGKEVHACI-RH--GGLESDVRVGTALLRMYGKCGS 179

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           ++ AR++F+++   D+ SW  +I  +A  G  + A +   ++  +E F PN+IT+V +L+
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQM-EQEGFKPNAITYVSILN 238

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLE---HYG-CLVDLLARAGNIDEALHLVSNMPM 404
           AC      SEG   +   ++ + +   LE     G  LV + A++G+ID+A  +   M +
Sbjct: 239 AC-----ASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV 293

Query: 405 KPDAVIWRSLLDA 417
           + D V W  ++ A
Sbjct: 294 R-DVVSWNVMIGA 305


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 340/580 (58%), Gaps = 15/580 (2%)

Query: 40  LTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFA-SFADLDYAFRVFYQIEN 95
           L  C  +  +K   + H + L+         L + + +I F  +      A  VF +   
Sbjct: 118 LAACARLGAVKLGRRFHCEVLKNGFGSD---LFVINALIQFYHNCGSFGCACDVFDESTV 174

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            +  TWN +I A   +     +A  L   M +  N+ PD+ T    + ACA L    +GK
Sbjct: 175 RDVVTWNIMINA-HLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGK 233

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H++  + GL  ++ +NN+++  Y  C  ++ A +VF+ + E+ ++SW  M+    + G
Sbjct: 234 FLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSG 293

Query: 216 EFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            F  AL LF++MQ+   E D  T   + SACA    L  G + H  I +     +  D++
Sbjct: 294 YFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKF---EINCDLV 350

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +  +L+DMY KCGS+D+A QVF  M  R++ +WN++I G A+HG  E A+  FD++   +
Sbjct: 351 LETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME-HD 409

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+ +TF+ +L AC+H G+V EG   F  M N++ I P +EHYGC+VDLL RA  +D+
Sbjct: 410 KLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDD 469

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           AL  + NMP+K ++V+W +LL AC +      L+E++ ++VIE E   C G YV+LS +Y
Sbjct: 470 ALAFIENMPIKANSVLWATLLGAC-RSGGHFDLAEKIGRRVIELEPDSC-GRYVMLSNLY 527

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A   +W+    +RK M +KG+ K PGCS IE++G+ H+F AGD SH QT+QIY  ++ + 
Sbjct: 528 AGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMT 587

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            ++   G     +   + D  ++ K+ SL LHSE+LAIALG+++   G PIR+ KNLRVC
Sbjct: 588 RRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVC 647

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH   K+ S+++N EI+ RDR+RFHHFK+GSCSCMD+W
Sbjct: 648 NDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 216/380 (56%), Gaps = 16/380 (4%)

Query: 41  TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIENPN 97
           T C S+S+ KQ HA  LRT L       L  S++I F + +   DL+YA ++F Q++NP+
Sbjct: 19  THCTSISKTKQAHALLLRTHLLHNP---LFSSKLISFLALSHSGDLNYARKLFTQMQNPD 75

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
            F  NT+IR  ARS +   +A+ L+  M+E+G V  D +T+PF L ACA L A   G++ 
Sbjct: 76  PFICNTMIRGYARSQNPY-EAVSLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRF 133

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  + K G  SD+++ N+LI FY +CG    A  VFD    R +V+WN+MI+A +  G  
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 218 DSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           + A  L   M  L    PD  T  S+  ACA L  L  G + H+Y     +  L  ++ V
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY---SKELGLDENLRV 250

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           NN+++DMYCKC  ++ A++VF  + ++D+ SW S++ G A  G  + AL  F ++ + + 
Sbjct: 251 NNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK- 309

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
              + IT VGVLSAC   G + +G+ Y  ++I+++ I   L     LVD+ A+ G+ID A
Sbjct: 310 IELDEITLVGVLSACAQTGALDQGK-YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLA 368

Query: 396 LHLVSNMPMKPDAVIWRSLL 415
           L +   M ++ +   W +L+
Sbjct: 369 LQVFRRMRVR-NVFTWNALI 387


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/584 (38%), Positives = 344/584 (58%), Gaps = 19/584 (3%)

Query: 38  SSLTECKSMSQLKQ---IHAQALRTAL--PQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           S LTEC S + +++   +HA  ++T    P   +T LI    + +     L  A RV  +
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLI----VLYNKCRCLGDARRVLDE 70

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   N  +W  +I   ++   A  +A+ LF  M+  G   P++ TF   L +C     F 
Sbjct: 71  MPERNVVSWTAMISGYSQRGYAS-EALHLFVEMLMSGTA-PNEFTFATVLTSCTSSSGFQ 128

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H+ + K    S +++ +SL+  YA  G +  A +VFD + ER +VS   +I  + 
Sbjct: 129 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 188

Query: 213 QFGEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q G  + AL LFRR+Q       Y T+ S+ +A +GLA L  G   H+++LR     L  
Sbjct: 189 QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRA---KLPF 245

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
            V++ NSLIDMY KCGSL  +R++F+SMP+R + SWN++++G++ HG    A++ F  + 
Sbjct: 246 YVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMK 305

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLVDLLARAG 390
            E    P+S+TF+ VLS C+H GM   G + F  M+N+ +   P +EHYGC+VDL  RAG
Sbjct: 306 EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAG 365

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++EA   +  MP +P A IW SLL A C+ H +V + E VA++++E E    +G YV+L
Sbjct: 366 RVEEAFEFIKKMPFEPTAAIWGSLLGA-CRVHQNVHIGEFVARRLLEIESE-NAGNYVIL 423

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YASA RW+DV  VR+LM +K V KEPG S IE+D   H F A D SHP+ ++++  +
Sbjct: 424 SNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKV 483

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             +  K+K  GY P+ S   + D  D+ K+  L+ HSE+LA+A G++    G P+R+ KN
Sbjct: 484 RELSIKIKEAGYVPELS-CVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKN 542

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C DCH   K +SR++  E+ +RD+ RFHH   G+CSC DYW
Sbjct: 543 LRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 340/616 (55%), Gaps = 41/616 (6%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
            S ++++L  CK+++Q+KQ+HA+ L   L Q    L    R +   +     Y   +F Q
Sbjct: 46  ESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +  PN F +N LIR     ++ + +    F  ++ +  V+P   TF    KAC       
Sbjct: 106 VNYPNPFLYNALIRGYL--IEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVG 163

Query: 153 QGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            G+Q H   I   G   D+++ NS+I  Y  CG L+   KVFD M  R ++SW  +I A+
Sbjct: 164 LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAY 223

Query: 212 VQFGEFDSALKLFR-----------------------RMQILF---------EPDGYTFQ 239
           V+ G  +SA +LF                        R  I+F         E D  T  
Sbjct: 224 VKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLI 283

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
            + SACA L       W    +    +      V+V ++LIDMY KCGS+  A +VF+ M
Sbjct: 284 GVISACAQLGAAKYADWIRD-VAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGM 342

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
            +R++ S++S+ILGFA+HGR   A+K FD +V  E   PN +TF+GVL+AC+H GMV +G
Sbjct: 343 KERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTE-IKPNRVTFIGVLTACSHAGMVEQG 401

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
              F++M   Y I P  +HY C+VDLL RAG + EA  LV  MP++P   +W +LL A C
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGA-C 460

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H S  ++   A  + E E   C G Y+LL+ +YAS  RWNDV  VRKLM  +G+ K P
Sbjct: 461 RIHKSPDIAAIAANHLFELE-PYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNP 519

Query: 480 GCSSIEID-GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
             S IE + G+ HEFF+GD +HP++ +I   L+ + ++L+++GY P  S  +  D  D+ 
Sbjct: 520 AFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSY-DVNDED 578

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K+  L  HSE+LA+A G+++  PG  IR+ KNLR+C+DCH V    S+I   EIIVRD  
Sbjct: 579 KRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIM 638

Query: 599 RFHHFKDGSCSCMDYW 614
           RFHHF DG CSC ++W
Sbjct: 639 RFHHFHDGICSCGNFW 654


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/583 (37%), Positives = 344/583 (59%), Gaps = 17/583 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+L ++ +  S+   + IH  ++R     +    +  + +  ++    +  A  +F ++ 
Sbjct: 281 SILPAVADVGSLRIGRSIHGYSMRAGF--ESFVNVSTALVDMYSKCGSVGTARLIFDRMT 338

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
                +WN++I    ++ D    A+ +FQ+M+++  V     T   AL ACA L    QG
Sbjct: 339 GKTVVSWNSMIDGYVQNGDPGA-AMEIFQKMMDE-QVEMTNVTVMGALHACADLGDVEQG 396

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H  + +  L SDV + NSLI  Y+ C  +D+A ++F+N+  ++LVSWN MI  + Q 
Sbjct: 397 RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQN 456

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  + A+  F +MQ+   +PD +T  S+  A A L+ L    W H  ++R C   L  +V
Sbjct: 457 GRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTC---LDKNV 513

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V  +L+DMY KCG++  AR++F+ M +R +T+WN++I G+  HG  +AAL+ F+++  +
Sbjct: 514 FVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMK-K 572

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           E   PN +TF+ VLSAC+H G+V EG  YF  M  +Y + P ++HYG +VDLL RA  ++
Sbjct: 573 EVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLN 632

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLS 451
           EA   +  MP++P   ++ ++L AC + H +V L E+ A ++  ++ + G   G +VLL+
Sbjct: 633 EAWDFIQKMPIEPAISVFGAMLGAC-RIHKNVELGEKAANRIFDLDPDDG---GYHVLLA 688

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YA+A  W+ V  VR  M  KG+ K PG S +E+    H F++G TSHPQ K+IY FL+
Sbjct: 689 NIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLE 748

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +  ++K+ GY PD +    V+  D  K+  L  HSE+LAIA  +LN  PG  I + KNL
Sbjct: 749 TLGNRIKAAGYMPDTNSVHDVE--DVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNL 806

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH  TK IS +   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 807 RVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 15/388 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFR 88
           + + S++L  L  C SM +L Q     ++  L  +H   L  ++++  F  F  L  A R
Sbjct: 76  YKHPSAILLEL--CTSMKELHQFIPLIIKNGLYSEH---LFQTKLVSLFCKFGSLHEAAR 130

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  IE+     ++T+++  AR+  +   A+  F RM   G V P  + F + LK C   
Sbjct: 131 VFQPIEDKIDELYHTMLKGYARN-SSLDDAVSFFCRMRYDG-VRPVVYNFTYLLKVCGDN 188

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +GK+ H  +   G  S+V+    +++ YA C  ++ A K+FD M ER LV WN +I
Sbjct: 189 ADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTII 248

Query: 209 DAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G   +AL+L  RMQ   + PD  T  SI  A A + +L +G   H Y +R    
Sbjct: 249 SGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFE 308

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           S V    V+ +L+DMY KCGS+  AR +F+ M  + + SWNS+I G+  +G   AA++ F
Sbjct: 309 SFVN---VSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIF 365

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            ++ ++E     ++T +G L AC   G V +GR +   ++++  +   +     L+ + +
Sbjct: 366 QKM-MDEQVEMTNVTVMGALHACADLGDVEQGR-FVHKLLDQLELGSDVSVMNSLISMYS 423

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +   +D A  +  N+  K   V W +++
Sbjct: 424 KCKRVDIAAEIFENLQHKT-LVSWNAMI 450


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 336/586 (57%), Gaps = 12/586 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           + + L+S +  C   + L QIHA  +RT+L Q H   L +      +   D+ Y+ +VF 
Sbjct: 67  SENQLISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFS 126

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           QI  P+   +N +IRA + S  +  Q   L++ M  +G V P+  +  F +K+C  + + 
Sbjct: 127 QIMKPSGSQYNVMIRAYSMS-HSPEQGFYLYREMRRRG-VPPNPLSSSFVMKSCIRISSL 184

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G Q HA I + G  SD  +  +L+  Y+ C   + A KVFD + +   VSWNV+I   
Sbjct: 185 MGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCC 244

Query: 212 VQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           +       AL++F  MQ     FEPD  T   +  ACA L  L  G   H YI    +H 
Sbjct: 245 IHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIE---EHG 301

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
               + + NSLI MY +CG L+ A  +F+ M +R++ SW+++I GFA+HG    A++ F+
Sbjct: 302 YDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFE 361

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           ++  +   SP+  T  GVLSAC+H G+V +G  +FD M   + I P + HYGC+VDLL R
Sbjct: 362 QMQ-QLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGR 420

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG +D+A  L+ +M +KPD+ +WR+LL AC + H    L E V   +IE +    +G YV
Sbjct: 421 AGLLDQAYQLIMSMVIKPDSTLWRTLLGAC-RIHRHATLGERVIGHLIELKAQE-AGDYV 478

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LL  +Y+S   W+ V  +RK M +KG+   PGCS+IE+ G  HEF   D  HP+T +IY 
Sbjct: 479 LLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYE 538

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD I ++LK  GY  + S + + +   + K + L  HSE+LAIA G+L   PG  IRV 
Sbjct: 539 MLDEIGKQLKIAGYVAELS-SELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVA 597

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR+C DCH   K++S  +N E+++RDR RFHHF++G CSC  YW
Sbjct: 598 KNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/584 (38%), Positives = 344/584 (58%), Gaps = 19/584 (3%)

Query: 38   SSLTECKSMSQLKQ---IHAQALRTAL--PQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
            S LTEC S + +++   +HA  ++T    P   +T LI    + +     L  A RV  +
Sbjct: 482  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLI----VLYNKCRCLGDARRVLDE 537

Query: 93   IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
            +   N  +W  +I   ++   A  +A+ LF  M+  G   P++ TF   L +C     F 
Sbjct: 538  MPERNVVSWTAMISGYSQRGYAS-EALHLFVEMLMSGTA-PNEFTFATVLTSCTSSSGFQ 595

Query: 153  QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
             G+Q H+ + K    S +++ +SL+  YA  G +  A +VFD + ER +VS   +I  + 
Sbjct: 596  LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 655

Query: 213  QFGEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            Q G  + AL LFRR+Q       Y T+ S+ +A +GLA L  G   H+++LR     L  
Sbjct: 656  QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRA---KLPF 712

Query: 272  DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
             V++ NSLIDMY KCGSL  +R++F+SMP+R + SWN++++G++ HG    A++ F  + 
Sbjct: 713  YVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMK 772

Query: 332  VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLVDLLARAG 390
             E    P+S+TF+ VLS C+H GM   G + F  M+N+ +   P +EHYGC+VDL  RAG
Sbjct: 773  EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAG 832

Query: 391  NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
             ++EA   +  MP +P A IW SLL A C+ H +V + E VA++++E E    +G YV+L
Sbjct: 833  RVEEAFEFIKKMPFEPTAAIWGSLLGA-CRVHQNVHIGEFVARRLLEIESE-NAGNYVIL 890

Query: 451  SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
            S +YASA RW+DV  VR+LM +K V KEPG S IE+D   H F A D SHP+ ++++  +
Sbjct: 891  SNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKV 950

Query: 511  DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
              +  K+K  GY P+ S   + D  D+ K+  L+ HSE+LA+A G++    G P+R+ KN
Sbjct: 951  RELSIKIKEAGYVPELS-CVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKN 1009

Query: 571  LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            LR+C DCH   K +SR++  E+ +RD+ RFHH   G+CSC DYW
Sbjct: 1010 LRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/575 (41%), Positives = 340/575 (59%), Gaps = 23/575 (4%)

Query: 46  MSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWN 102
           M+ + ++H   ++++    P   +TLL+       A+   L YA  VF +I +P++  +N
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVA---AAPESLSYARYVFSRIPSPDTIAYN 57

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHAHI 161
           T+IR+ +R   +      LF     + N +P D  TFPF LKAC+ L         H+ I
Sbjct: 58  TIIRSHSRFFPSHS----LFYFFSMRSNGIPLDNFTFPFVLKACSRL---QINLHLHSLI 110

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K GL SD+++ N+LI  Y  CG L++A KVFD M ER  VSW+ +I +F+  G    AL
Sbjct: 111 VKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEAL 170

Query: 222 KLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
            LF +MQ+  +  PD  T  S+ SA + L  L LG W  A+I R     L   V +  +L
Sbjct: 171 DLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRL---GLGVSVALGTAL 227

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           IDM+ +CGS+D +  VFE M  R++ +W ++I G  +HGR+  AL  F  +  +    P+
Sbjct: 228 IDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMR-KSGVQPD 286

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            +TF GVL AC+H G+V EG D F+ +   Y + P+L+HYGC+VD+L RAG ++EA   V
Sbjct: 287 YVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFV 346

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MPMKP+++IWR+LL AC   H ++ L+E+V K  I       +G  VLLS VY +A R
Sbjct: 347 ERMPMKPNSIIWRTLLGACV-NHNNLGLAEKV-KAKISKISSSQNGDLVLLSNVYGAAGR 404

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W +   +R  M +K + KEPGCSSI +D   HEF +GD SHPQ++ I  FL  I   L++
Sbjct: 405 WVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRN 464

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
           RGY    ++  + D  ++ ++ SL  HSE+LA+A  IL++K    IR+ KNLR+C DCH 
Sbjct: 465 RGYMMQ-TKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHS 523

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             K IS  F  +II+RDR RFHHF+ G CSC DYW
Sbjct: 524 FMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 336/612 (54%), Gaps = 46/612 (7%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L  C S S+  +IHA A+R ++ Q         R   +A+   LD A  +  +  +P + 
Sbjct: 31  LAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRA--YAASGRLDLAVALLRRTPDPTAV 88

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            + + I A +     +    +L + ++ +  +LP  HT   +L AC  L   + G+  H 
Sbjct: 89  FYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCL---AVGRALHG 145

Query: 160 HIFKRGLVSDVYINNSLIHF--------------------------------YASCGHLD 187
           +  K  L  + Y+  +L+                                  YA  G LD
Sbjct: 146 YAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLD 205

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
            A  +FD +  + LV WN M+D + Q G    AL+LFR+M +   EPD  +     SA A
Sbjct: 206 DARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVA 265

Query: 247 GLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESM---PKR 302
            L T   G W H+++      + V  +  V  +L+DMY KCGSL+ A  VF  +     R
Sbjct: 266 QLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDR 325

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           D+ +WN++I G+A+HGR+  AL+ F +L   +   P  ITF+GVL+AC+H G+V EGR  
Sbjct: 326 DVVAWNAMINGYAMHGRSREALEAFGQLRA-QGLWPTDITFIGVLNACSHSGLVDEGRAL 384

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M  EY I P +EHYGC+VDLL RAG ++EA  LV +M  KPDA +W SLL A C+ H
Sbjct: 385 FAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGA-CRLH 443

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            ++ L + VA  ++   G   SG YVLLS +YA+A +W +VG VR +M   GV KEPGCS
Sbjct: 444 KNLALGQRVADYLV-GNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCS 502

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
           ++E+     EF AGD SHP++ +IY  L+ ++   ++RG+ P +++  + D  D  K+ +
Sbjct: 503 AVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVP-HTELVLHDLDDAAKERA 561

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L +HSE+LA+A G+++  P   I++ KNLR C DCH V KL+S     +I+ RDR RFHH
Sbjct: 562 LAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHH 621

Query: 603 FKDGSCSCMDYW 614
           F DGSCSC DYW
Sbjct: 622 FVDGSCSCGDYW 633


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 348/584 (59%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           +++LL   T+   + + K +H   L +    +H  ++  S +  +A    L+ A R+F +
Sbjct: 77  YNTLLKRCTQLGKLKEGKLVHFHVLNSNF--KHDLVIQNSLLFMYARCGSLEGARRLFDE 134

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           + + +  +W ++I   A++ D    A++LF RM+  G   P++ T    +K C Y+ +++
Sbjct: 135 MPHRDMVSWTSMITGYAQN-DRASDALLLFPRMLSDG-AEPNEFTLSSLVKCCGYMASYN 192

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q HA  +K G  S+V++ +SL+  YA CG+L  A  VFD +  ++ VSWN +I  + 
Sbjct: 193 CGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYA 252

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + GE + AL LF RMQ   + P  +T+ ++ S+C+ +  L  G W HA++++     LV 
Sbjct: 253 RKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKS-SQKLVG 311

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              V N+L+ MY K GS+  A +VF+ + K D+ S NS+++G+A HG  + A + FD ++
Sbjct: 312 --YVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMI 369

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 PN ITF+ VL+AC+H  ++ EG+ YF +M  +YNI P + HY  +VDLL RAG 
Sbjct: 370 -RFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGL 427

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           +D+A   +  MP++P   IW +LL A  K H +  +    A++V E +     G + LL+
Sbjct: 428 LDQAKSFIEEMPIEPTVAIWGALLGAS-KMHKNTEMGAYAAQRVFELDPSY-PGTHTLLA 485

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YASA RW DV  VRK+M D GV KEP CS +E++   H F A D +HPQ ++I+   +
Sbjct: 486 NIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWE 545

Query: 512 LIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
            +++K+K  GY PD S   + VD+ +  K+ +L+ HSE+LA++  +LN  PG  IR+ KN
Sbjct: 546 KLNQKIKEIGYVPDTSHVLLFVDQQE--KELNLQYHSEKLALSFALLNTPPGSTIRIMKN 603

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +RVC DCH   K +S +   EIIVRD  RFHHF DG CSC DYW
Sbjct: 604 IRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +I+ G++ PD+  +   LK C  L    +GK  H H+       D+ I NSL+  YA CG
Sbjct: 64  LIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG 123

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            L+ A ++FD M  R +VSW  MI  + Q      AL LF RM     EP+ +T  S+  
Sbjct: 124 SLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVK 183

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
            C  +A+ + G   HA   ++  HS   +V V +SL+DMY +CG L  A  VF+ +  ++
Sbjct: 184 CCGYMASYNCGRQIHACCWKYGCHS---NVFVGSSLVDMYARCGYLGEAMLVFDKLGCKN 240

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             SWN++I G+A  G  E AL  F R+   E + P   T+  +LS+C+  G + +G+ + 
Sbjct: 241 EVSWNALIAGYARKGEGEEALALFVRM-QREGYRPTEFTYSALLSSCSSMGCLEQGK-WL 298

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
              + + +   V      L+ + A++G+I +A  +   + +K D V   S+L      +A
Sbjct: 299 HAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKL-VKVDVVSCNSMLIG----YA 353

Query: 424 SVVLSEEVAKQVIE 437
              L +E A+Q  E
Sbjct: 354 QHGLGKEAAQQFDE 367


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/588 (38%), Positives = 345/588 (58%), Gaps = 16/588 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAF 87
            +SS+LS+ TE   ++  KQ+H++ +R  L          + +Y++    A+   +D + 
Sbjct: 53  TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC---AADGSVDDSR 109

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF Q+   N  +W  +I A A+S +   +AI LF +MI  G++ P+  +F   LKAC  
Sbjct: 110 KVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGN 168

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L     G+Q +++  K G+ S   + NSLI  YA  G ++ A K FD + E++LVS+N +
Sbjct: 169 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 228

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +D + +  + + A  LF  +         +TF S+ S  A +  +  G   H  +L+   
Sbjct: 229 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-- 286

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               ++  + N+LI MY +CG+++ A QVF  M  R++ SW S+I GFA HG A  AL+ 
Sbjct: 287 -GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 345

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F +++ E    PN IT+V VLSAC+H GM+SEG+ +F+ M  E+ I P +EHY C+VDLL
Sbjct: 346 FHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 404

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G + EA+  +++MP+  DA++WR+LL A C+ H +  L    A+ ++E E       
Sbjct: 405 GRSGLLVEAMEFINSMPLMADALVWRTLLGA-CRVHGNTELGRHAAEMILEQEPDD-PAA 462

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS ++ASA +W DV  +RK M ++ + KE GCS IE++   H F  G+TSHPQ  QI
Sbjct: 463 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 522

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  LD +  K+K  GY PD +   + D  ++ K+  L  HSE++A+A G+++     PIR
Sbjct: 523 YQELDQLASKIKEMGYIPD-TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIR 581

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +FKNLRVC DCH   K IS     EI+VRD  RFHH K+G CSC DYW
Sbjct: 582 IFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 184/364 (50%), Gaps = 26/364 (7%)

Query: 86  AFRVFYQIENPNSFTWNTLIR-----ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           A++VF ++   N  TW  +I       CAR       AI LF  M E    +PD+ T+  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCAR------DAIDLFLDM-ELSGYVPDRFTYSS 56

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNML 197
            L AC  L   + GKQ H+ + + GL  DV +  SL+  YA C   G +D + KVF+ M 
Sbjct: 57  VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 116

Query: 198 ERSLVSWNVMIDAFVQFGEFD-SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
           E +++SW  +I A+ Q GE D  A++LF +M      P+ ++F S+  AC  L+    G 
Sbjct: 117 EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 176

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             ++Y ++     + +   V NSLI MY + G ++ AR+ F+ + +++L S+N+I+ G+A
Sbjct: 177 QVYSYAVK---LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 233

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITP 374
            + ++E A   F+  + +     ++ TF  +LS     G + +G   +  ++   Y    
Sbjct: 234 KNLKSEEAFLLFNE-IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 292

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +     L+ + +R GNI+ A  + + M  + + + W S++     KH     + E+  +
Sbjct: 293 CI--CNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFA-KHGFATRALEMFHK 348

Query: 435 VIES 438
           ++E+
Sbjct: 349 MLET 352


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/605 (38%), Positives = 343/605 (56%), Gaps = 44/605 (7%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL S T  K   +++QIHA+       +    +  + + +  +    LDYA ++  + +
Sbjct: 19  SLLDSGTTFK---EIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSD 75

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQ 153
            P  F  N++IRA  +S     ++   + R++  GN L PD +T  F ++AC  L     
Sbjct: 76  KPTLFALNSMIRAHCKS-PVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRET 134

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYAS------------------------------- 182
           G Q H    +RG  +D ++   LI  YA                                
Sbjct: 135 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACAR 194

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
           CG +  A K+F+ M E+  ++WN MI  + Q GE   AL LF  MQ+   + +G +  S+
Sbjct: 195 CGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISV 254

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SAC  L  L  G WAH+YI R+    +   V +  +L+D+Y KCG +D A +VF  M +
Sbjct: 255 LSACTQLGALDQGRWAHSYIERN---KIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEE 311

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           +++ +W+S + G A++G  E  LK F  L+ ++  +PN++TFV VL  C+  G V EG+ 
Sbjct: 312 KNVYTWSSALNGLAMNGFGEKCLKLFS-LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQK 370

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +FD M NE+ I P L+HYGCLVDL ARAG +++A+ ++  MPMK  A +W SLL A  + 
Sbjct: 371 HFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHAS-RM 429

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           + ++ L    +K+++E E     G YVLLS +YA +  W++V  VR+ M  KGV K+PGC
Sbjct: 430 YKNLELGVLASKKMLELETS-NHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGC 488

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S +E++G  HEFF GD SHP+  +I      I  +L+  GY  D +   M D  ++ K+ 
Sbjct: 489 SVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKAD-TTPVMFDIDEEEKED 547

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +L LHSE+ AIA GI++LK  +PIR+ KNLRVC DCH+V+ +IS+IFN EIIVRDR RFH
Sbjct: 548 ALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFH 607

Query: 602 HFKDG 606
           HFKDG
Sbjct: 608 HFKDG 612



 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 277/496 (55%), Gaps = 7/496 (1%)

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
            VL + M  +    P++ TF   + AC +     +G   H  + K G++ +V + N+L++ 
Sbjct: 622  VLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNL 681

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTF 238
            Y   G L  + K+F+++  ++LVSWN MI   +Q G  +  L  F   + +  +PD  TF
Sbjct: 682  YGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATF 741

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             ++   C  +  + L    H  I+  C  +   +  +  +L+D+Y K G L+ +  VF  
Sbjct: 742  LAVLRVCEDIGVVRLSQGIHGLIM-FCGFN--ANTCITTALLDLYAKLGRLEDSSTVFLE 798

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            +   D  +W +++  +A HG    A+K+F+ L+V    SP+ +TF  +L+AC+H G+V E
Sbjct: 799  ITSPDSMAWTAMLAAYATHGYGRDAIKHFE-LMVHYGLSPDHVTFTHLLNACSHSGLVEE 857

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            GR YF+ M   Y I P L+HY C+VDL+ R+G + +A  L+  MPM+P + +W +LL AC
Sbjct: 858  GRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGAC 917

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
             + +    L  + AK++ E E       Y++LS +Y+++  W D   +R LM  KG+ + 
Sbjct: 918  -RVYKDTQLGTKAAKRLFELEPRDGRN-YIMLSNIYSASGLWKDASRIRNLMKQKGLVRA 975

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
             G S IE     H+F  GD SHP++++I   L  I +K+KS       ++  + D  +D 
Sbjct: 976  SGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDV 1035

Query: 539  KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
            K+  +  HSE++A+A G+L + P  PI + KNLR+C DCHE  K IS I    II+RD  
Sbjct: 1036 KEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSK 1095

Query: 599  RFHHFKDGSCSCMDYW 614
            RFHHF +GSCSC DYW
Sbjct: 1096 RFHHFLEGSCSCRDYW 1111



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
            G+    L    R ++ F P+  TF S+ SAC        G+  H  +++     ++ +V
Sbjct: 616 LGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMK---SGVLEEV 672

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD--RLV 331
            V N+L+++Y K G L  + ++FE +  ++L SWN++I+    +G AE  L YF+  R V
Sbjct: 673 KVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWV 732

Query: 332 VEESFSPNSITFVGVLSACNHRGMV--SEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
                 P+  TF+ VL  C   G+V  S+G     +M   +N    +     L+DL A+ 
Sbjct: 733 ---GLKPDQATFLAVLRVCEDIGVVRLSQGIHGL-IMFCGFNANTCIT--TALLDLYAKL 786

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G ++++  +   +   PD++ W ++L A
Sbjct: 787 GRLEDSSTVFLEIT-SPDSMAWTAMLAA 813



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 140/332 (42%), Gaps = 13/332 (3%)

Query: 25  RNEGSFN-NHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASF 80
           R+E  F  N  + LS ++ C      ++   IH   +++ + ++ K  ++ + +  +   
Sbjct: 628 RSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVK--VVNALMNLYGKT 685

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  + ++F  +   N  +WNT+I    ++  A+ + +  F  M     + PD+ TF  
Sbjct: 686 GDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAE-EGLAYFN-MSRWVGLKPDQATFLA 743

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L+ C  +      +  H  I   G  ++  I  +L+  YA  G L+ ++ VF  +    
Sbjct: 744 VLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPD 803

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
            ++W  M+ A+   G    A+K F  M      PD  TF  + +AC+    +  G +   
Sbjct: 804 SMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFE 863

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHG 318
            + +   + +   +   + ++D+  + G L  A  + + MP    +  W +++    ++ 
Sbjct: 864 TMSKR--YRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYK 921

Query: 319 RAEAALKYFDRLV-VEESFSPNSITFVGVLSA 349
             +   K   RL  +E     N I    + SA
Sbjct: 922 DTQLGTKAAKRLFELEPRDGRNYIMLSNIYSA 953



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 18/251 (7%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHF 77
           FN +R  G   + ++ L+ L  C+ +  ++    IH   +         T +  + +  +
Sbjct: 726 FNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF--NANTCITTALLDLY 783

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A    L+ +  VF +I +P+S  W  ++ A A     +  AI  F+ M+  G + PD  T
Sbjct: 784 AKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGR-DAIKHFELMVHYG-LSPDHVT 841

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVS---DVYINNSLIHFYASCGHLDLANKVFD 194
           F   L AC++     +G+     + KR  +    D Y  + ++      G L  A  +  
Sbjct: 842 FTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHY--SCMVDLMGRSGLLQDAYGLIK 899

Query: 195 NM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSL 253
            M +E S   W  ++ A   + +     K  +R+  L   DG  +  +++  +     + 
Sbjct: 900 EMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYS-----AS 954

Query: 254 GMWAHAYILRH 264
           G+W  A  +R+
Sbjct: 955 GLWKDASRIRN 965


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 341/609 (55%), Gaps = 49/609 (8%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           LT C ++ +  ++HA A+R  +           R   +A+   LD    +     +P + 
Sbjct: 42  LTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRA--YAASDRLDLTVTLLRLTPDPTTV 99

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            + + I A + S      A+ L   M+ +G ++P  HT   +L AC      + G+  HA
Sbjct: 100 FYTSAIHAHS-SRGLHLAALALLSEMLGRG-LIPTSHTLSSSLPAC---HGLALGRALHA 154

Query: 160 HIFKRGLVSDVYINNSLIHFYA---------------------------SC----GHLDL 188
           + FK  L  D Y+  +L+  YA                           +C    G LD 
Sbjct: 155 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 214

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG 247
           A ++FD M  +  + WN MID + Q G  + AL+LFR M +   +PD        SA A 
Sbjct: 215 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 274

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L T   G W H+Y+       +  +  V  +LIDMYCKCGSL+ A  VF S+  +D+  W
Sbjct: 275 LGTAESGRWLHSYVKN--SRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVW 332

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N++I G+A+HG +  AL+ F +L   +   P  ITF+G+L+AC+H G+V EG  +F  M 
Sbjct: 333 NAMINGYAMHGDSRKALEMFSQLR-SQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSME 391

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            EY I P +EHYGC+VDLL RAG I+EA HLV +M + PD V+W SLL A C+ H ++ L
Sbjct: 392 EEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLL-AACRLHKNMAL 450

Query: 428 SEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
            +++A  ++   GG+  SG+Y+LLS +YA+   W +V  VR +M   G+ KEPGCS+IE+
Sbjct: 451 GQQIADYLV--AGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEV 508

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD-GKQSSLRL 545
               +EF AGD SHP+T +IY  L+ ++  +K +G+ P      ++ +LD+  K+ +L +
Sbjct: 509 GRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTE--LVLHDLDEVTKEKALAV 566

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LA+A G+++  PG  I++ KNLR C DCH V KLIS+I   +I+ RDR RFHHF D
Sbjct: 567 HSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVD 626

Query: 606 GSCSCMDYW 614
           GSC+C DYW
Sbjct: 627 GSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 341/609 (55%), Gaps = 49/609 (8%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           LT C ++ +  ++HA A+R  +           R   +A+   LD    +     +P + 
Sbjct: 41  LTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRA--YAASDRLDLTVTLLRLTPDPTTV 98

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            + + I A + S      A+ L   M+ +G ++P  HT   +L AC      + G+  HA
Sbjct: 99  FYTSAIHAHS-SRGLHLAALALLSEMLGRG-LIPTSHTLSSSLPAC---HGLALGRALHA 153

Query: 160 HIFKRGLVSDVYINNSLIHFYA---------------------------SC----GHLDL 188
           + FK  L  D Y+  +L+  YA                           +C    G LD 
Sbjct: 154 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 213

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG 247
           A ++FD M  +  + WN MID + Q G  + AL+LFR M +   +PD        SA A 
Sbjct: 214 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 273

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L T   G W H+Y+       +  +  V  +LIDMYCKCGSL+ A  VF S+  +D+  W
Sbjct: 274 LGTAESGRWLHSYVKN--SRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVW 331

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N++I G+A+HG +  AL+ F +L   +   P  ITF+G+L+AC+H G+V EG  +F  M 
Sbjct: 332 NAMINGYAMHGDSRKALEMFSQLR-SQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSME 390

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            EY I P +EHYGC+VDLL RAG I+EA HLV +M + PD V+W SLL A C+ H ++ L
Sbjct: 391 EEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLL-AACRLHKNMAL 449

Query: 428 SEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
            +++A  ++   GG+  SG+Y+LLS +YA+   W +V  VR +M   G+ KEPGCS+IE+
Sbjct: 450 GQQIADYLV--AGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEV 507

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD-GKQSSLRL 545
               +EF AGD SHP+T +IY  L+ ++  +K +G+ P      ++ +LD+  K+ +L +
Sbjct: 508 GRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTE--LVLHDLDEVTKEKALAV 565

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LA+A G+++  PG  I++ KNLR C DCH V KLIS+I   +I+ RDR RFHHF D
Sbjct: 566 HSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVD 625

Query: 606 GSCSCMDYW 614
           GSC+C DYW
Sbjct: 626 GSCTCGDYW 634


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/588 (38%), Positives = 345/588 (58%), Gaps = 16/588 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAF 87
            +SS+LS+ TE   ++  KQ+H++ +R  L          + +Y++    A+   +D + 
Sbjct: 58  TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC---AADGSVDDSR 114

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF Q+   N  +W  +I A A+S +   +AI LF +MI  G++ P+  +F   LKAC  
Sbjct: 115 KVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGN 173

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L     G+Q +++  K G+ S   + NSLI  YA  G ++ A K FD + E++LVS+N +
Sbjct: 174 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 233

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +D + +  + + A  LF  +         +TF S+ S  A +  +  G   H  +L+   
Sbjct: 234 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-- 291

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               ++  + N+LI MY +CG+++ A QVF  M  R++ SW S+I GFA HG A  AL+ 
Sbjct: 292 -GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 350

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F +++ E    PN IT+V VLSAC+H GM+SEG+ +F+ M  E+ I P +EHY C+VDLL
Sbjct: 351 FHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 409

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G + EA+  +++MP+  DA++WR+LL A C+ H +  L    A+ ++E E       
Sbjct: 410 GRSGLLVEAMEFINSMPLMADALVWRTLLGA-CRVHGNTELGRHAAEMILEQEPDD-PAA 467

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS ++ASA +W DV  +RK M ++ + KE GCS IE++   H F  G+TSHPQ  QI
Sbjct: 468 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 527

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  LD +  K+K  GY PD +   + D  ++ K+  L  HSE++A+A G+++     PIR
Sbjct: 528 YQELDQLASKIKEMGYIPD-TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIR 586

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +FKNLRVC DCH   K IS     EI+VRD  RFHH K+G CSC DYW
Sbjct: 587 IFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 184/364 (50%), Gaps = 26/364 (7%)

Query: 86  AFRVFYQIENPNSFTWNTLIR-----ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           A++VF ++   N  TW  +I       CAR       AI LF  M E    +PD+ T+  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCAR------DAIDLFLDM-ELSGYVPDRFTYSS 61

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNML 197
            L AC  L   + GKQ H+ + + GL  DV +  SL+  YA C   G +D + KVF+ M 
Sbjct: 62  VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 121

Query: 198 ERSLVSWNVMIDAFVQFGEFD-SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
           E +++SW  +I A+ Q GE D  A++LF +M      P+ ++F S+  AC  L+    G 
Sbjct: 122 EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 181

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             ++Y ++     + +   V NSLI MY + G ++ AR+ F+ + +++L S+N+I+ G+A
Sbjct: 182 QVYSYAVK---LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 238

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITP 374
            + ++E A   F+  + +     ++ TF  +LS     G + +G   +  ++   Y    
Sbjct: 239 KNLKSEEAFLLFNE-IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 297

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +     L+ + +R GNI+ A  + + M  + + + W S++     KH     + E+  +
Sbjct: 298 CI--CNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFA-KHGFATRALEMFHK 353

Query: 435 VIES 438
           ++E+
Sbjct: 354 MLET 357


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/594 (37%), Positives = 352/594 (59%), Gaps = 22/594 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L + +  + +   K++HA AL+     ++ + +  + +  + +   +    RVF  +
Sbjct: 302 SSVLPACSHLEMLRTGKELHAYALKNGSLDEN-SFVGSALVDMYCNCKQVLSGCRVFDGM 360

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            +     WN +I   A++ +   +A++LF  M E   +L +  T    + AC    AFS+
Sbjct: 361 FDRKIGLWNAMITGYAQN-EYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            +  H  + KRGL  D ++ N+L+  Y+  G +D+A ++F  M +R LV+WN +I  +V 
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 214 FGEFDSALKLFRRMQIL------------FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
               + AL +  +MQIL             +P+  T  +I  +CA L+ L+ G   HAY 
Sbjct: 480 SERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 539

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +++   +L TDV V ++L+DMY KCG L ++R+VF+ +P R++ +WN I++ + +HG ++
Sbjct: 540 IKN---NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+    R+++ +   PN +TF+ V +AC+H GMV+EG   F  M  +Y + P  +HY C
Sbjct: 597 DAIDML-RMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYAC 655

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           +VDLL RAG + EA  L++ +P   D A  W SLL AC + H ++ + E  A+ +I+ E 
Sbjct: 656 VVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGAC-RIHNNLEIGEIAAQNLIQLEP 714

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
            + S  YVLL+ +Y+SA  W     VR+ M  +GV KEPGCS IE     H+F AGD+SH
Sbjct: 715 NVASH-YVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSH 773

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           PQ++++ G+L+ + E+++  GY PD S   + +  +D K+  L  HSE+LAIA GILN  
Sbjct: 774 PQSEKLRGYLETLWERMRKEGYIPDTS-CVLHNVEEDEKEILLCGHSEKLAIAFGILNTS 832

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PG  IRV KNLRVC DCH  TK IS++ + EII+RD  RFHHFK+G+CSC DYW
Sbjct: 833 PGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 183/389 (47%), Gaps = 20/389 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LL ++ + + M   KQIHA   +        T+   + +  +    D    ++VF +I 
Sbjct: 98  ALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTV-ANTLVNLYRKCGDFGAVYKVFDRIS 156

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAF 151
             N  +WN+LI +   S +    A+  F+ M+++ +V P   T      AC+        
Sbjct: 157 ERNQVSWNSLISSLC-SFEKWEMALEAFRCMLDE-DVEPSSFTLVSVALACSNFPMPEGL 214

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA+  ++G ++  +I N+L+  Y   G L  +  +  +   R LV+WN ++ + 
Sbjct: 215 LMGKQVHAYGLRKGELNS-FIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSL 273

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  +F  AL+  R M +   EPDG+T  S+  AC+ L  L  G   HAY L+  + SL 
Sbjct: 274 CQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALK--NGSLD 331

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V ++L+DMYC C  +    +VF+ M  R +  WN++I G+A +   E AL  F  +
Sbjct: 332 ENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEM 391

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLL 386
                   NS T  GV+ AC   G  S+        I+ + +   L+        L+D+ 
Sbjct: 392 EESAGLLANSTTMAGVVPACVRSGAFSKKE-----AIHGFVVKRGLDRDRFVQNALMDMY 446

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +R G ID A  +   M  + D V W +++
Sbjct: 447 SRLGKIDIAKRIFGKMEDR-DLVTWNTII 474



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 138/266 (51%), Gaps = 12/266 (4%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           W  L+R+  RS +   +A++ +  MI  G + PD   FP  LKA A L     GKQ HAH
Sbjct: 61  WIDLLRSKVRS-NLLREAVLTYIDMIVLG-IKPDNFAFPALLKAVADLQDMDLGKQIHAH 118

Query: 161 IFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           ++K G  V  V + N+L++ Y  CG      KVFD + ER+ VSWN +I +   F +++ 
Sbjct: 119 VYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 178

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLAT---LSLGMWAHAYILRHCDHSLVTDVLV 275
           AL+ FR M     EP  +T  S+  AC+       L +G   HAY LR  +     +  +
Sbjct: 179 ALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGE----LNSFI 234

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            N+L+ MY K G L  ++ +  S   RDL +WN+++     + +   AL+Y   +V+ E 
Sbjct: 235 INTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVL-EG 293

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRD 361
             P+  T   VL AC+H  M+  G++
Sbjct: 294 VEPDGFTISSVLPACSHLEMLRTGKE 319



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 9/210 (4%)

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            +PD + F ++  A A L  + LG   HA++ +      V  V V N+L+++Y KCG   
Sbjct: 89  IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYG--VDSVTVANTLVNLYRKCGDFG 146

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
              +VF+ + +R+  SWNS+I       + E AL+ F R +++E   P+S T V V  AC
Sbjct: 147 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDEDVEPSSFTLVSVALAC 205

Query: 351 NHRGM---VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           ++  M   +  G+      + +  +   +     LV +  + G +  +  L+ +   + D
Sbjct: 206 SNFPMPEGLLMGKQVHAYGLRKGELNSFI--INTLVAMYGKMGKLASSKVLLGSFEGR-D 262

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
            V W ++L + C+    +   E + + V+E
Sbjct: 263 LVTWNTVLSSLCQNEQFLEALEYLREMVLE 292


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/569 (40%), Positives = 338/569 (59%), Gaps = 14/569 (2%)

Query: 49  LKQIHAQALRTALPQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIENPNSFTWNTLIRA 107
           L Q+HA  + +   +    L   +++++ A  A  + Y  ++F  + NP+SF + +LI++
Sbjct: 28  LHQVHAHIIVSGYGRSRSLL---TKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKS 84

Query: 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
            ++S +    ++  + RM+   NV P  +TF   +K+CA L A   G+  H H+   G  
Sbjct: 85  TSKSHNFSIYSLYFYSRMV-LSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFG 143

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            DVY+  +L+  Y  CG L  A KVFD + ERS+V+WN MI  + Q G    A+ LF RM
Sbjct: 144 LDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRM 203

Query: 228 -QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
            +   EPD  TF S+ SACA L   SLG W H YI+    + L  +V++  SLI+MY +C
Sbjct: 204 KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIV---GNGLDLNVVLGTSLINMYIRC 260

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G++  AR+VF+SM +R++ +W ++I G+  +G    A++ F  +     F PNSITFV V
Sbjct: 261 GNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLF-PNSITFVAV 319

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV-SNMPMK 405
           LSAC H G+V+EGR  F  +  EY++ P +EH  CLVD+L RAG +DEA + +   +P  
Sbjct: 320 LSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPEN 379

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           P   I  ++L AC K H +  L  +VA+ ++ +E       YV+LS +YA A R + V +
Sbjct: 380 PAPAILTAMLGAC-KMHKNFDLGAQVAEHLLAAEPE-NPAHYVILSNIYALAGRMDQVEI 437

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           VR  M  K + K+ G S++E+D   + F  GD SH +T  IY +LD +  K    GY P 
Sbjct: 438 VRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVP- 496

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            S + M +  ++ ++ +LR HSE+LAIA G+L    G PIR+ KNLR+C+DCH   K IS
Sbjct: 497 VSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFIS 556

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            I + EIIVRD+ RFHHFK GSCSC+DYW
Sbjct: 557 AISSREIIVRDKLRFHHFKVGSCSCLDYW 585


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 341/599 (56%), Gaps = 15/599 (2%)

Query: 20  IFNNNRNEGSFNNH---SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F+  R +G+  N    SSL+S+ T    +   + IH    +     +   L+    I+ 
Sbjct: 139 LFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF--ESDNLVSNPLIMM 196

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     ++   +VF  + NP+  +WN L+     S        + +Q ++E     P+  
Sbjct: 197 YMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLE--GFKPNMF 254

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L++C+ L     GKQ HAHI K     D ++  +L+  YA    L+ A   FD +
Sbjct: 255 TFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRL 314

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
           + R + SW V+I  + Q  + + A+K FR+MQ    +P+ YT  S  S C+ +ATL  G 
Sbjct: 315 VNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGR 374

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA  ++        D+ V ++L+D+Y KCG ++ A  +F+ +  RD+ SWN+II G++
Sbjct: 375 QLHAVAVKA---GHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYS 431

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG+ E AL+ F R+++ E   P+  TF+GVLSAC+  G+V EG+  FD M   Y I P 
Sbjct: 432 QHGQGEKALEAF-RMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPS 490

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHY C+VD+L RAG  +E    +  M + P ++IW ++L AC K H +V   E+ AK++
Sbjct: 491 IEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGAC-KLHGNVDFGEKAAKKL 549

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
            E E  + S  Y+LLS ++AS  RW+DV  +R LMT +G+ KEPGCS +E+DG  H F +
Sbjct: 550 FEMEPMMDSS-YILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLS 608

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D SHP+ ++IY  LD + + L S GY P  ++  + +  +  K   L  HSERLA++  
Sbjct: 609 QDGSHPKIREIYAKLDKLGQSLMSIGYVPK-TEVVLHNVSNKEKMEHLYYHSERLALSFA 667

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +L+     PIR+FKNLR+C+DCH+  KLIS I N EI+VRD  RFHHFK G+CSC D W
Sbjct: 668 LLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 7/270 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A R+F+ +   N  +WN L+   A+  D K + + LF +M E       K T    L
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGK-KVLKLFCKMKECETKFS-KFTLSTVL 58

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K CA   +  +GK  HA   + G   D ++  SL+  Y+ CG +  A KVF  +    +V
Sbjct: 59  KGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVV 118

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +W+ MI    Q G    A +LF  M+     P+ +T  S+ S    +  L  G   H  I
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
              C +   +D LV+N LI MY K   ++   +VFE+M   DL SWN+++ GF       
Sbjct: 179 ---CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCG 235

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACN 351
              + F ++++ E F PN  TF+ VL +C+
Sbjct: 236 RGPRIFYQMLL-EGFKPNMFTFISVLRSCS 264


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/623 (37%), Positives = 343/623 (55%), Gaps = 47/623 (7%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           S  +HS+ +  L +  S++Q+KQIHAQ +   L Q   T L+   I  +    +L +A  
Sbjct: 51  SLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQN--TSLLGPLIHSYIGCRNLSFARI 108

Query: 89  VFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN-VLPDKHTFPFALKACA 146
           VF Q  + P +  WN +I+A +++  ++ +++ LF +M+  G     DK+TF F   AC+
Sbjct: 109 VFDQFPSLPPTIIWNLMIQAYSKTPSSQ-ESLYLFHQMLAHGRPTSADKYTFTFVFTACS 167

Query: 147 -YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
            +      G+  H  + K G  SD+++ NSL++ Y+    +  A +VFD M +R +++W 
Sbjct: 168 RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWT 227

Query: 206 VMIDAFVQFGEFDSALKLFRRM---------------------------------QILFE 232
            ++  +   GE   A +LF  M                                     +
Sbjct: 228 SVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVK 287

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P+     SI SACA L  L  G W H YI ++    ++    ++ +LIDMY KCG +D A
Sbjct: 288 PNEAVLVSILSACAHLGALDQGKWIHVYIDKN---RILLSSNISTALIDMYAKCGRIDCA 344

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
           R+VF+ + KRDL +W S+I G ++HG     L  F  ++ E  F P+ IT +GVL+ C+H
Sbjct: 345 RRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAE-GFKPDDITLLGVLNGCSH 403

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
            G+V EG   F  MI  + I P LEHYGCL+DLL RAG ++ A   + +MPM+PD V WR
Sbjct: 404 SGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWR 463

Query: 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472
           +LL A C+ H  V L E +   + E   G   G YVLLS +YAS  +W  V  VRK M+ 
Sbjct: 464 ALLSA-CRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQ 522

Query: 473 KGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK-SRGYTPDYSQAAM 531
           +G    PGCS IEIDG+ HEF A D  HP+  +I   L+ +  ++    GY P   Q  +
Sbjct: 523 RGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQ-VL 581

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
            D  ++ K+ ++  HSE+LA+A G+L+ + G  IR+ KNLR C+DCH   K IS +FN E
Sbjct: 582 FDLNEEDKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNRE 640

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           I+VRDR+RFH F+ G+CSC DYW
Sbjct: 641 IVVRDRSRFHTFRYGNCSCTDYW 663


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/491 (41%), Positives = 310/491 (63%), Gaps = 7/491 (1%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M +  N+ PD+ T    + ACA L    +GK  H++  + GL  ++ +NN+++  Y  C 
Sbjct: 1   MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCD 60

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITS 243
            ++ A +VF+ + E+ ++SW  M+    + G F  +L LFR+MQ+   EPD  T   + S
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA    L  G + H  I +     +  D+++  +L+DMY KCGS+D+A QVF  M  R+
Sbjct: 121 ACAQTGALDQGKYIHLLIDKF---EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN 177

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + +WN++I G A+HG  E A+  FD++  ++   P+ +TF+ +L AC+H G+V EG   F
Sbjct: 178 VFTWNAMIGGLAMHGHGEDAISLFDQMEXDK-LMPDDVTFIALLCACSHAGLVDEGLAMF 236

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M N++ I P +EHYGC+VDLL RA  +D+AL  + NMP+K ++V+W +LL AC +   
Sbjct: 237 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC-RSGG 295

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
              L+E++ ++VIE E   C G YV+LS +YA   +W+    +RK M +KG+ K PGCS 
Sbjct: 296 HFDLAEKIXRRVIELEPDSC-GRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 354

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           IE++G+ H+F AGD SH QT+QIY  ++ +  ++   G     +   + D  ++ K+ SL
Sbjct: 355 IELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSL 414

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
            LHSE+LAIALG+++   G PIR+ KNLRVC DCH   K+ S+++N EI+ RDR+RFHHF
Sbjct: 415 FLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHF 474

Query: 604 KDGSCSCMDYW 614
           K+GSCSCMD+W
Sbjct: 475 KEGSCSCMDFW 485



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 21/267 (7%)

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           D++ A  VF +I   +  +W +++   A+S     +++ LF++M +   + PD+ T    
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKS-GYFQESLALFRKM-QLHKIEPDEITLVGV 118

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L ACA   A  QGK  H  I K  +  D+ +  +L+  YA CG +DLA +VF  M  R++
Sbjct: 119 LSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 178

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSAC--AGLATLSLGMWAH 258
            +WN MI      G  + A+ LF +M+     PD  TF ++  AC  AGL    L M+  
Sbjct: 179 FTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQA 238

Query: 259 A----YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILG 313
                 I    +H           ++D+ C+   +D A    E+MP K +   W +++  
Sbjct: 239 MKNKFQIEPRMEHY--------GCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 290

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNS 340
               G  + A K   R++      P+S
Sbjct: 291 CRSGGHFDLAEKIXRRVI---ELEPDS 314


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 349/614 (56%), Gaps = 29/614 (4%)

Query: 3   VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALP 62
            A V   PP P TH                ++SLL S  + K+++  KQ+HAQ     + 
Sbjct: 34  TASVDSFPPQPTTHY--------------GYTSLLQSCIDSKALNPGKQLHAQFYHLGIA 79

Query: 63  QQHKTLLIYSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVL 121
                  + ++++H  + ++ L  A  +F +I   N F WN LIR  A +      AI+L
Sbjct: 80  YNQD---LATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWN-GPHDNAIIL 135

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           + +M++ G + PD  T PF LKAC+ L A  +G+  H ++ K G   D+++  +LI  YA
Sbjct: 136 YHKMLDYG-LRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYA 194

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQS 240
            CG +  A +VFD ++ R  V WN M+ A+ Q G  D ++ L R M      P   T  +
Sbjct: 195 KCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVT 254

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + S+ A +A L  G   H +  RH      ++  V  +LIDMY KCGS+ +A  +FE + 
Sbjct: 255 VISSSADVACLPYGREIHGFGWRH---GFQSNDKVKTALIDMYAKCGSVKVALALFERLR 311

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           ++ + SWN+II G+A+HG A  AL  FD++  E+   P+ ITFVGVL+AC+   ++ EGR
Sbjct: 312 EKRVVSWNAIITGYAMHGLAVGALDLFDKMRKEDR--PDHITFVGVLAACSRGRLLDEGR 369

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             +++M+ +Y ITP ++HY C++DLL   G +DEA  L+ NM +KPD+ +W +LL++ CK
Sbjct: 370 ALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNS-CK 428

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H +V L+E   +++IE E    SG YV+L+ +YA + +W  V  +R++M DK + K   
Sbjct: 429 IHGNVELAELALEKLIELEPDD-SGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIA 487

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
           CS IE+    + F AGD SH  +  IY  L  ++  +   GY PD + +   D  +D K 
Sbjct: 488 CSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPD-TGSVFHDVEEDEKT 546

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
           S +  HSERLAIA G+++  PG  + + KNLR+C+DCH   K IS+I   EI VRD  R+
Sbjct: 547 SMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRY 606

Query: 601 HHFKDGSCSCMDYW 614
           H FK G CSC D+W
Sbjct: 607 HSFKHGMCSCGDHW 620


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 340/574 (59%), Gaps = 43/574 (7%)

Query: 68  LLIYSRIIHFASFADL-DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
           L +    IH  S   L +YA ++F   +     TWN ++    R      ++  LF  M 
Sbjct: 171 LFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR-FKRYEESKRLFIEME 229

Query: 127 EQGN-VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCG 184
           ++   V P+  T    L AC+ L     GK  +    K G+V  ++ + N+LI  +ASCG
Sbjct: 230 KKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCG 289

Query: 185 HLD-------------------------------LANKVFDNMLERSLVSWNVMIDAFVQ 213
            +D                               LA K FD M ER  VSW  MID +++
Sbjct: 290 EMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLR 349

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
              F   L LFR MQ+   +PD +T  SI +ACA L  L LG WA  YI ++    +  D
Sbjct: 350 MNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKN---KIKND 406

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + N+LIDMY KCG+++ A+++F  M K+D  +W ++I+G A +G  E AL  F  ++ 
Sbjct: 407 TFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYML- 465

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           E S +P+ IT++GV+ AC H G+V++G+ +F  M  ++ I P L HYGC+VDLL RAG++
Sbjct: 466 EASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHL 525

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
            EAL ++ NMP+KP++++W SLL A C+ H +V L+E  A +++E E      VYVLL  
Sbjct: 526 KEALEVIMNMPVKPNSIVWGSLLGA-CRVHKNVQLAEMAANEILELEPE-NGAVYVLLCN 583

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA+ ++W ++  VRK+M ++G+ K PGCS +E++GI +EF AGD SHPQ+K+IY  L+ 
Sbjct: 584 IYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLEN 643

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           + + L + GY+PD S+   +D  ++ K+++L +HSE+LAIA  +++   G+ IR+ KNLR
Sbjct: 644 MKQDLSNAGYSPDTSE-VFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLR 702

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           +C DCH +  ++S+++N E+IVRD+ RFHHF+ G
Sbjct: 703 MCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 205/418 (49%), Gaps = 46/418 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFY 91
           S +S L  C +M ++ QIH+Q ++T L   H   L  +++I F       D+ YA +VF 
Sbjct: 37  SPISLLETCNTMYEINQIHSQTIKTGLSSNH---LFLTKVIIFCCTKESGDVYYARKVFD 93

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I  P+ F WNT+I+  +R ++     + L++ M+   N+ PD  TFPF LK      A 
Sbjct: 94  EIPQPSVFIWNTMIKGYSR-INCSESGVSLYKLMLVH-NIKPDGFTFPFLLKGFTKDMAL 151

Query: 152 SQGKQAHAHIFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             GK    H    G + S++++    IH ++ CG ++ A K+FD      +V+WNV++  
Sbjct: 152 KYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSG 211

Query: 211 FVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           + +F  ++ + +LF  M+   E   P+  T   + SAC+ L  L  G   +   ++  + 
Sbjct: 212 YNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK--EG 269

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            +  ++++ N+LIDM+  CG +D AR VF+ M  RD+ SW SI+ GFA   R + A KYF
Sbjct: 270 IVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYF 329

Query: 328 DRLVVEESFS------------------------------PNSITFVGVLSACNHRGMVS 357
           D++   +  S                              P+  T V +L+AC H G + 
Sbjct: 330 DQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALE 389

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G ++    I++  I         L+D+  + GN+++A  + + M  K D   W +++
Sbjct: 390 LG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM-QKKDKFTWTAMI 445



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQ---QHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +++S LT C  +  L+    +  +T + +   ++ T +  + I  +    +++ A ++F 
Sbjct: 374 TMVSILTACAHLGALEL--GEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFN 431

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +++  + FTW  +I   A +   + +A+ +F  M+E  +V PD+ T+   + AC ++   
Sbjct: 432 EMQKKDKFTWTAMIVGLANNGHGE-EALTMFSYMLE-ASVTPDEITYIGVMCACTHVGLV 489

Query: 152 SQGKQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMID 209
           ++GK   +++  + G+  ++     ++      GHL  A +V  NM ++ + + W  ++ 
Sbjct: 490 AKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLG 549

Query: 210 A 210
           A
Sbjct: 550 A 550


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 359/679 (52%), Gaps = 119/679 (17%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKT 67
           PTP  +S ++ NN+R    F NH +L S + +C    QLKQIHAQ LRT L   P     
Sbjct: 18  PTPNPNSITL-NNDR---YFANHPTL-SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASR 72

Query: 68  LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
           L+  + +   + F  LDYA +VF QI +PN +TWNTLIRA A S +   Q++++F RM+ 
Sbjct: 73  LITAAAL---SPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH-QSLLIFLRMLH 128

Query: 128 QGNVLPDKHTFP-------------------------------FALKACAYLFA----FS 152
           Q    PDK TFP                               F L +  + +A      
Sbjct: 129 QSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELG 188

Query: 153 QGKQAHAHIFKRGLVS----------------------------DVYINNSLIHFYASCG 184
            G +   +I +R +VS                             + ++N+++  Y  CG
Sbjct: 189 LGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKCG 248

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244
            ++ A ++FD M E+ +VSW  M+  + + GE+D+A  +F  M      D   + ++ SA
Sbjct: 249 SVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMP---NQDIAAWNALISA 305

Query: 245 C--AGLATLSLGMWAHAYILRHCDHSLVT-------DVLVNNSLIDMYCKCGSLDIARQV 295
               G    +L ++    + +      VT       +  +  SLIDMYCKCG L  A  V
Sbjct: 306 YEQCGKPKEALELFHELQLSKTAKPDEVTLKQGMKLNCHLTTSLIDMYCKCGDLQKALMV 365

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F S+ ++D+  W+++I G A+HG  + A+  F ++  E+   PN++TF  +L AC+H G+
Sbjct: 366 FHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ-EDKVKPNAVTFTNILCACSHVGL 424

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V EGR +F+ M   Y                               MPM P A +W +LL
Sbjct: 425 VEEGRTFFNQMELVYG-----------------------------KMPMAPAASVWGALL 455

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            AC   H +VVL+E+   Q+IE E G   G YVLLS +YA A +W+ V  +RKLM D G+
Sbjct: 456 GAC-TIHENVVLAEQACSQLIELEPG-NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGL 513

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            KEPGCSSIE+DGI HEF  GD SHP  K+IY  LD I  +L++ GY P+ S    + E 
Sbjct: 514 KKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEE 573

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           +D K+ +L LHSE+LAIA G+++     PIR+ KNLRVC DCH V KL+S++++ EI++R
Sbjct: 574 EDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLR 633

Query: 596 DRARFHHFKDGSCSCMDYW 614
           DR RFHHF++G CSCMDYW
Sbjct: 634 DRYRFHHFREGHCSCMDYW 652



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           M  A VQGG P     +  +F     + S    +++L   T+C S+   K++  +     
Sbjct: 208 MITAFVQGGCPE---EALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDK----- 259

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
           +P++   +   + ++ +A   + D A  +F  + N +   WN LI A  +    K +A+ 
Sbjct: 260 MPEK-DIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPK-EALE 317

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           LF  +       PD+ T                         K+G+  + ++  SLI  Y
Sbjct: 318 LFHELQLSKTAKPDEVTL------------------------KQGMKLNCHLTTSLIDMY 353

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQ 239
             CG L  A  VF ++  + +  W+ MI      G    A+ LF +MQ    +P+  TF 
Sbjct: 354 CKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFT 413

Query: 240 SITSACAGLATLSLG 254
           +I  AC+ +  +  G
Sbjct: 414 NILCACSHVGLVEEG 428


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 353/613 (57%), Gaps = 45/613 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           L+ +  E  S+S  + +H  A+++A+      + + + +IH + S  DLD A +VF  I+
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSD---VFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WN++I    +   +  +A+ LF++M E  +V     T    L ACA +     G
Sbjct: 194 EKDVVSWNSMINGFVQK-GSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFG 251

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-------------- 200
           +Q  ++I +  +  ++ + N+++  Y  CG ++ A ++FD M E+               
Sbjct: 252 RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 311

Query: 201 -----------------LVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSI 241
                            +V+WN +I A+ Q G+ + AL +F  +Q+    + +  T  S 
Sbjct: 312 EDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVST 371

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA +  L LG W H+YI +H    +  +  V ++LI MY KCG L+ +R+VF S+ K
Sbjct: 372 LSACAQVGALELGRWIHSYIKKH---GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK 428

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD+  W+++I G A+HG    A+  F ++  E +  PN +TF  V  AC+H G+V E   
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ-EANVKPNGVTFTNVFCACSHTGLVDEAES 487

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            F  M + Y I P  +HY C+VD+L R+G +++A+  +  MP+ P   +W +LL AC K 
Sbjct: 488 LFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC-KI 546

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           HA++ L+E    +++E E     G +VLLS +YA   +W +V  +RK M   G+ KEPGC
Sbjct: 547 HANLNLAEMACTRLLELEPR-NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 605

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           SSIEIDG+ HEF +GD +HP ++++YG L  + EKLKS GY P+ SQ   + E ++ K+ 
Sbjct: 606 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQ 665

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           SL LHSE+LAI  G+++ +    IRV KNLRVC DCH V KLIS++++ EIIVRDR RFH
Sbjct: 666 SLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFH 725

Query: 602 HFKDGSCSCMDYW 614
           HF++G CSC D+W
Sbjct: 726 HFRNGQCSCNDFW 738



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 218/430 (50%), Gaps = 38/430 (8%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H  F+N     + N  S  +S +  C S+ QLKQ H   +RT       +      +   
Sbjct: 15  HPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL 74

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           +SFA L+YA +VF +I  PNSF WNTLIRA A   D    +I  F  M+ +    P+K+T
Sbjct: 75  SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDP-VLSIWAFLDMVSESQCYPNKYT 133

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           FPF +KA A + + S G+  H    K  + SDV++ NSLIH Y SCG LD A KVF  + 
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           E+ +VSWN MI+ FVQ G  D AL+LF++M+    +    T   + SACA +  L  G  
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL--------------------------- 289
             +YI    ++ +  ++ + N+++DMY KCGS+                           
Sbjct: 254 VCSYIE---ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310

Query: 290 ----DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
               + AR+V  SMP++D+ +WN++I  +  +G+   AL  F  L ++++   N IT V 
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            LSAC   G +  GR +    I ++ I         L+ + ++ G+++++   V N   K
Sbjct: 371 TLSACAQVGALELGR-WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE-VFNSVEK 428

Query: 406 PDAVIWRSLL 415
            D  +W +++
Sbjct: 429 RDVFVWSAMI 438



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 210/474 (44%), Gaps = 55/474 (11%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA 78
           S    NR   +    +++L   T+C S+   K++          ++   +   + +  +A
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM------EEKDNVTWTTMLDGYA 309

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHT 137
              D + A  V   +   +   WN LI A  +  + KP +A+++F  +  Q N+  ++ T
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQ--NGKPNEALIVFHELQLQKNMKLNQIT 367

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
               L ACA + A   G+  H++I K G+  + ++ ++LIH Y+ CG L+ + +VF+++ 
Sbjct: 368 LVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE 427

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           +R +  W+ MI      G  + A+ +F +MQ    +P+G TF ++  AC+       G+ 
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS-----HTGLV 482

Query: 257 AHAYILRH---CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIIL 312
             A  L H    ++ +V +      ++D+  + G L+ A +  E+MP    TS W +++ 
Sbjct: 483 DEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLG 542

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYF-------- 363
              +H     A     RL+  E  +  + +    + +       VSE R +         
Sbjct: 543 ACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE 602

Query: 364 --------DVMINEY----NITPVLEH-YGCLVDLLARAGN------IDEALHLVSNMPM 404
                   D MI+E+    N  P+ E  YG L +++ +  +      I + L ++    M
Sbjct: 603 PGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEM 662

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAK--QVIES--EGGICSGVYVLLSRVY 454
           K  ++   S   A C      ++S E  K  +VI++    G C  V  L+S++Y
Sbjct: 663 KEQSLNLHSEKLAICYG----LISTEAPKVIRVIKNLRVCGDCHSVAKLISQLY 712


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/524 (43%), Positives = 316/524 (60%), Gaps = 14/524 (2%)

Query: 97  NSFTWNTLIRACARSV--DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ- 153
           ++F  NTLIRA A S    A+ +A   F  M+    VLP+K TFPF LKACA L  F   
Sbjct: 92  DAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSA-VLPNKFTFPFLLKACAALPGFPGV 150

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCG--HLDLANKVFDNMLERSLVSWNVMIDAF 211
           G QAHA   K G  +D Y++N+LIH Y+  G   L  A  VFD M + S+V+W+ MI  +
Sbjct: 151 GLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGY 210

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           V+ G    A+ LFR MQ     PD  T   + +A A L  L L  W   ++ R     + 
Sbjct: 211 VRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVERE---GIG 267

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             V + N+LID   KCG +D A  VF+ M +R + SW S+I   A+ GR + A+  F+ +
Sbjct: 268 KSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAM 327

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                  P+ + F+GVL+AC+H GMV EG  YFD M  EY I P +EHYGC+VD+  RAG
Sbjct: 328 KTA-GVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAG 386

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++ A+  +  MPMKP+ +IWR+L+ A C+ H  + L E + + ++ +E       YV+L
Sbjct: 387 MVERAMEFIHTMPMKPNPIIWRTLV-AACRAHGRLELGESITRNLL-NEYPAHEANYVML 444

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S VYA  +RW +   +R+ M+ +G+ K PGCS +E+DG  HEF AGD SHPQ K+IY  +
Sbjct: 445 SNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMV 504

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + +  +LK  G+    S+  ++D  ++ K+ +L+ HSE+LAIA  +L   PG  +RV KN
Sbjct: 505 EEMARELKHVGHISATSE-VLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKN 563

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   K IS ++N EIIVRDR+RFH FK+GSCSC D+W
Sbjct: 564 LRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 34/178 (19%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            A   D+D A  VF  +E     +W ++I A A     K +A+ +F+ M   G V PD  
Sbjct: 280 LAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGK-EAVAVFEAMKTAG-VRPDDV 337

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
            F   L AC           +HA     G+V + Y            G+ D     +   
Sbjct: 338 VFIGVLTAC-----------SHA-----GMVDEGY------------GYFDSMKMEYG-- 367

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
           ++  +  +  M+D F + G  + A++    M +  +P+   ++++ +AC     L LG
Sbjct: 368 IDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPM--KPNPIIWRTLVAACRAHGRLELG 423


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/524 (42%), Positives = 314/524 (59%), Gaps = 14/524 (2%)

Query: 97  NSFTWNTLIRACARSV--DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ- 153
           ++F  NTLIR    S    A+ +A   F  M+ +  V P+K TFPF LK+CA L      
Sbjct: 96  DAFLVNTLIRTHVTSPFPSARRRAAAFFPLML-RAAVAPNKFTFPFLLKSCAALPGSPDV 154

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYA--SCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           G QAHA   K G  +D Y++N+LIH Y+    G L  A  VF+ M   S V+W+ MI  +
Sbjct: 155 GLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGY 214

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           V+ G    A+ LFR MQ+    PD  T   + +A A L  L L  W   ++ R     + 
Sbjct: 215 VRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVERE---GIG 271

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             V + N+LID   KCG +D A  VFE M +R + SW S+I   A+ GR + A+  F+ +
Sbjct: 272 KSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEM 331

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                  P+ + F+GVL+AC+H GMV EGR YFD M  EY I P +EHYGC+VD+  RAG
Sbjct: 332 KAVGVL-PDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAG 390

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            +++ L  V  MPMKP+ +IWR+L+ A C+ H  + L E + + ++ +E       YV+L
Sbjct: 391 MVEQGLEFVRAMPMKPNPIIWRTLV-AACRAHGRLELGESITRNLL-NEFPAHEANYVML 448

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S VYA  +RW +   +R+ M+ +G+ K PGCS +E+DG  HEF AGD SHPQ K+IY  +
Sbjct: 449 SNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMV 508

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + +  +L+  G+    S+  ++D  ++ K+ +L+ HSE+LAIA  +L   PG  +RV KN
Sbjct: 509 EEMSRELRRIGHIAATSE-VLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKN 567

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   K IS+++N EI+VRDR+RFH FKDGSCSC D+W
Sbjct: 568 LRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 332/555 (59%), Gaps = 42/555 (7%)

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           ++  N F+WN++I   ARS D+  +A+  F  M  + ++ P++ TFP A+K+C+ L    
Sbjct: 36  VDKTNVFSWNSVIAELARSGDS-VEALRAFSSM-RKLSLKPNRSTFPCAIKSCSALLDLH 93

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+QAH      G   D++++++L+  Y+ CG L  A  +FD +  R++VSW  MI  +V
Sbjct: 94  SGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYV 153

Query: 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACA--GLATLSLGMWAH------------ 258
           Q  +   AL++F  M    E D  ++ SI +  A  G++T S+ ++              
Sbjct: 154 QNDDAHRALRVFDGMA---ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 259 --AYILRHCDHS-----------------LVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
             + +L  C HS                 L ++V V  S+IDMYCKCG +++AR+ F+ M
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
            ++++ SW++++ G+ +HG A+ AL+ F  + +     PN ITFV VL+AC+H G++ EG
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNM-AGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
             +F  M +E+++ P +EHYGC+VDLL RAG + EA  L+  M ++PD V+W +LL A C
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA-C 388

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H +V L E  A+++ E +   C G YVLLS +YA A RW DV  +R LM + G+ K P
Sbjct: 389 RMHKNVDLGEISARKLFELDPKNC-GYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPP 447

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           G S ++I G  H F  GD  HPQ ++IY +L+ +  KL+  GY PD + + + D   + K
Sbjct: 448 GFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMT-SVLHDVGHEEK 506

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           +  LR+HSE+LA+A GI+N  PG  I + KNLRVC DCH   K IS+I + EI+VRD  R
Sbjct: 507 EMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKR 566

Query: 600 FHHFKDGSCSCMDYW 614
           FHHF+DG CSC DYW
Sbjct: 567 FHHFRDGLCSCGDYW 581


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/575 (40%), Positives = 338/575 (58%), Gaps = 23/575 (4%)

Query: 46  MSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWN 102
           M+ + ++H   ++++    P   +TLL+       A+   L YA  VF +I +P++  +N
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVA---AAPESLSYARYVFSRIPSPDTIAYN 57

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHAHI 161
           T+IR+ +R   +   +     R     N +P D  TFPF LKAC+ L         H+ I
Sbjct: 58  TIIRSHSRFFPSHSLSYFFSMR----SNGIPLDNFTFPFVLKACSRL---QINLHLHSLI 110

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K GL SD+++ N+LI  Y  CG L++A KVFD M ER  VSW+ +I +F+  G    AL
Sbjct: 111 VKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEAL 170

Query: 222 KLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
            LF +MQ+  +  PD  T  S+ SA + L  L LG W  A+I R         V +  +L
Sbjct: 171 DLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRL---GFGVSVALGTAL 227

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           IDM+ +CGS+D +  VFE M  R++ +W ++I G  +HGR+  AL  F  +  +    P+
Sbjct: 228 IDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMR-KSGVQPD 286

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            +TF GVL AC+H G+V EG D F+ +   Y + P+L+HYGC+VD+L RAG ++EA   V
Sbjct: 287 YVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFV 346

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MPMKP+++IWR+LL AC   H ++ L+E+V K  I       +G  VLLS VY +A R
Sbjct: 347 ERMPMKPNSIIWRTLLGACV-NHNNLGLAEKV-KAKISKISSSQNGDLVLLSNVYGAAGR 404

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W +   +R  M +K + KEPGCSSI +D   HEF +GD SHPQ++ I  FL  I   L++
Sbjct: 405 WVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRN 464

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
           RGY    ++  + D  ++ ++ SL  HSE+LA+A  IL++K    IR+ KNLR+C DCH 
Sbjct: 465 RGYMMQ-TKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHS 523

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             K IS  F  +II+RDR RFHHF+ G CSC DYW
Sbjct: 524 FMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 344/588 (58%), Gaps = 16/588 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAF 87
            +SS+LS+ TE   ++  KQ+H++ +R  L          + +Y++    A+   +D + 
Sbjct: 251 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC---AADGSVDDSR 307

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF Q+   N  +W  +I A  +S +   +AI LF +MI  G++ P+  +F   LKAC  
Sbjct: 308 KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGN 366

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L     G+Q +++  K G+ S   + NSLI  YA  G ++ A K FD + E++LVS+N +
Sbjct: 367 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 426

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +D + +  + + A  LF  +         +TF S+ S  A +  +  G   H  +L+   
Sbjct: 427 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-- 484

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               ++  + N+LI MY +CG+++ A QVF  M  R++ SW S+I GFA HG A  AL+ 
Sbjct: 485 -GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 543

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F +++ E    PN IT+V VLSAC+H GM+SEG+ +F+ M  E+ I P +EHY C+VDLL
Sbjct: 544 FHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 602

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G + EA+  +++MP+  DA++WR+LL A C+ H +  L    A+ ++E E       
Sbjct: 603 GRSGLLVEAMEFINSMPLMADALVWRTLLGA-CRVHGNTELGRHAAEMILEQEPDD-PAA 660

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS ++ASA +W DV  +RK M ++ + KE GCS IE++   H F  G+TSHPQ  QI
Sbjct: 661 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 720

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  LD +  K+K  GY PD +   + D  ++ K+  L  HSE++A+A G+++     PIR
Sbjct: 721 YQELDQLASKIKEMGYIPD-TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIR 779

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +FKNLRVC DCH   K IS     EI+VRD  RFHH K+G CSC DYW
Sbjct: 780 IFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 187/369 (50%), Gaps = 26/369 (7%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIR-----ACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            DL  A++VF ++   N  TW  +I       CAR       AI LF  M E    +PD+
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCAR------DAIDLFLDM-ELSGYVPDR 249

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKV 192
            T+   L AC  L   + GKQ H+ + + GL  DV +  SL+  YA C   G +D + KV
Sbjct: 250 FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 309

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFD-SALKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           F+ M E +++SW  +I A+VQ GE D  A++LF +M      P+ ++F S+  AC  L+ 
Sbjct: 310 FEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSD 369

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
              G   ++Y ++     + +   V NSLI MY + G ++ AR+ F+ + +++L S+N+I
Sbjct: 370 PYTGEQVYSYAVK---LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 426

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINE 369
           + G+A + ++E A   F+  + +     ++ TF  +LS     G + +G   +  ++   
Sbjct: 427 VDGYAKNLKSEEAFLLFNE-IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGG 485

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           Y     +     L+ + +R GNI+ A  + + M  + + + W S++     KH     + 
Sbjct: 486 YKSNQCI--CNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITG-FAKHGFATRAL 541

Query: 430 EVAKQVIES 438
           E+  +++E+
Sbjct: 542 EMFHKMLET 550



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 20/320 (6%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++ Q N  PD  T+   LK+C     F  GK  H  + + GL  D  + N+LI  Y+ CG
Sbjct: 34  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 93

Query: 185 HLDLANKVFDNML-ERSLVSWNVMIDAFVQFG-EFDSALKLFRRMQILFEPDGYTFQSIT 242
             + A  +F+ M  +R LVSW+ M+  F     E+ +       +++ F P+ Y F ++ 
Sbjct: 94  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 153

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK-CGSLDIARQVFESMPK 301
            AC+      +G   + ++++     L  DV V   LIDM+ K  G L  A +VF+ MP+
Sbjct: 154 RACSNANYAWVGEIIYGFVVK--TGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 211

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R+L +W  +I  FA  G A  A+  F  + +   + P+  T+  VLSAC   G+++ G+ 
Sbjct: 212 RNLVTWTLMITRFAQLGCARDAIDLFLDMEL-SGYVPDRFTYSSVLSACTELGLLALGKQ 270

Query: 362 YFDVMINEYNITPVLEHYGC-LVDLLARA---GNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               +I       V    GC LVD+ A+    G++D++  +   MP + + + W +++ A
Sbjct: 271 LHSRVIRLGLALDVC--VGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 327

Query: 418 CCKKHASVVLSEEVAKQVIE 437
                   V S E  K+ IE
Sbjct: 328 -------YVQSGECDKEAIE 340


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 344/588 (58%), Gaps = 16/588 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAF 87
            +SS+LS+ TE   ++  KQ+H++ +R  L          + +Y++    A+   +D + 
Sbjct: 233 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC---AADGSVDDSR 289

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF Q+   N  +W  +I A  +S +   +AI LF +MI  G++ P+  +F   LKAC  
Sbjct: 290 KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGN 348

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L     G+Q +++  K G+ S   + NSLI  YA  G ++ A K FD + E++LVS+N +
Sbjct: 349 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 408

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +D + +  + + A  LF  +         +TF S+ S  A +  +  G   H  +L+   
Sbjct: 409 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-- 466

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               ++  + N+LI MY +CG+++ A QVF  M  R++ SW S+I GFA HG A  AL+ 
Sbjct: 467 -GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 525

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F +++ E    PN IT+V VLSAC+H GM+SEG+ +F+ M  E+ I P +EHY C+VDLL
Sbjct: 526 FHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 584

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R+G + EA+  +++MP+  DA++WR+LL A C+ H +  L    A+ ++E E       
Sbjct: 585 GRSGLLVEAMEFINSMPLMADALVWRTLLGA-CRVHGNTELGRHAAEMILEQEPDD-PAA 642

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS ++ASA +W DV  +RK M ++ + KE GCS IE++   H F  G+TSHPQ  QI
Sbjct: 643 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 702

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  LD +  K+K  GY PD +   + D  ++ K+  L  HSE++A+A G+++     PIR
Sbjct: 703 YQELDQLASKIKEMGYIPD-TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIR 761

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +FKNLRVC DCH   K IS     EI+VRD  RFHH K+G CSC DYW
Sbjct: 762 IFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 187/369 (50%), Gaps = 26/369 (7%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIR-----ACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            DL  A++VF ++   N  TW  +I       CAR       AI LF  M E    +PD+
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCAR------DAIDLFLDM-ELSGYVPDR 231

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKV 192
            T+   L AC  L   + GKQ H+ + + GL  DV +  SL+  YA C   G +D + KV
Sbjct: 232 FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 291

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFD-SALKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           F+ M E +++SW  +I A+VQ GE D  A++LF +M      P+ ++F S+  AC  L+ 
Sbjct: 292 FEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSD 351

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
              G   ++Y ++     + +   V NSLI MY + G ++ AR+ F+ + +++L S+N+I
Sbjct: 352 PYTGEQVYSYAVK---LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 408

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINE 369
           + G+A + ++E A   F+  + +     ++ TF  +LS     G + +G   +  ++   
Sbjct: 409 VDGYAKNLKSEEAFLLFNE-IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGG 467

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           Y     +     L+ + +R GNI+ A  + + M  + + + W S++     KH     + 
Sbjct: 468 YKSNQCI--CNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITG-FAKHGFATRAL 523

Query: 430 EVAKQVIES 438
           E+  +++E+
Sbjct: 524 EMFHKMLET 532



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 20/320 (6%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++ Q N  PD  T+   LK+C     F  GK  H  + + GL  D  + N+LI  Y+ CG
Sbjct: 16  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 75

Query: 185 HLDLANKVFDNML-ERSLVSWNVMIDAFVQFG-EFDSALKLFRRMQILFEPDGYTFQSIT 242
             + A  +F+ M  +R LVSW+ M+  F     E+ +       +++ F P+ Y F ++ 
Sbjct: 76  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 135

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK-CGSLDIARQVFESMPK 301
            AC+      +G   + ++++     L  DV V   LIDM+ K  G L  A +VF+ MP+
Sbjct: 136 RACSNANYAWVGEIIYGFVVK--TGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 193

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R+L +W  +I  FA  G A  A+  F  + +   + P+  T+  VLSAC   G+++ G+ 
Sbjct: 194 RNLVTWTLMITRFAQLGCARDAIDLFLDMEL-SGYVPDRFTYSSVLSACTELGLLALGKQ 252

Query: 362 YFDVMINEYNITPVLEHYGC-LVDLLARA---GNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               +I       V    GC LVD+ A+    G++D++  +   MP + + + W +++ A
Sbjct: 253 LHSRVIRLGLALDVC--VGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 309

Query: 418 CCKKHASVVLSEEVAKQVIE 437
                   V S E  K+ IE
Sbjct: 310 -------YVQSGECDKEAIE 322


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/441 (46%), Positives = 288/441 (65%), Gaps = 8/441 (1%)

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEP 233
           ++I  YA  G +D A  +FD + ER  + WNVMID + Q G  +  L LFR+M      P
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  T  ++ SAC     L  G W H+YI    ++ +  +V V  SLIDMY KCGSL+ AR
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIE---NNGIGINVRVGTSLIDMYSKCGSLEDAR 127

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            VFE +  +D+ +WNS+++G+A+HG ++ AL+ F  + +   + P  ITF+GVL+AC+H 
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMI-GYQPTDITFIGVLNACSHA 186

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+VSEG  +F  M +EY I P +EHYGC+V+LL RAG ++EA  LV NM +  D V+W +
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGT 246

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL AC + H ++ L E++A+ ++ S+    SG YVLLS +YA+A  W  V  VR LM + 
Sbjct: 247 LLGAC-RLHGNIALGEQIAEYLV-SQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKES 304

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           G  KEPGCSSIE++   HEF AGD  HP++++IY  L+ I+  LK+ GYTP  +   + D
Sbjct: 305 GFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQ-TDIVLHD 363

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             D  K+ SL +HSE+LA+A G++  KPG  I++ KNLRVC DCH VTKLIS+I   +++
Sbjct: 364 LEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVV 423

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           +RDR RFHHF +G CSC DYW
Sbjct: 424 MRDRNRFHHFVNGLCSCGDYW 444



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 134/273 (49%), Gaps = 8/273 (2%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A +  +D A  +F  +E  ++  WN +I   A+      + ++LF++M+    V P
Sbjct: 13  ITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQH-GLPNEGLLLFRQML-NAKVRP 70

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++ T    L AC    A   G+  H++I   G+  +V +  SLI  Y+ CG L+ A  VF
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           + +  + +V+WN M+  +   G    AL+LF+ M  I ++P   TF  + +AC+    +S
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
            G W   Y ++  ++ +   V     ++++  + G L+ A ++ ++M   +D   W +++
Sbjct: 191 EG-WKFFYSMKD-EYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLL 248

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
               LHG      +  + LV +     NS T+V
Sbjct: 249 GACRLHGNIALGEQIAEYLVSQN--LANSGTYV 279


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/546 (40%), Positives = 315/546 (57%), Gaps = 41/546 (7%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           WN LI    RS   +  +   F  M+ + + +    T+   L AC        G Q H  
Sbjct: 129 WNALISGHNRSGRFE-LSCCSFVDMV-RASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLA------------------------------- 189
           + + G++ D  + N+L+  YA CG +D A                               
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
             +FD+M ER  ++W  MID +VQ G F  AL+ FR MQI     D +T  S+ +ACA L
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             L  G WA  Y+ R     +  DV V N+LIDMY KCGS++ A  VF+ M  RD  +W 
Sbjct: 307 GALETGEWARIYMGRL---GIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWT 363

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           +IILG A++GR E A+  F R++     +P+ +TFVGVL+AC H G+V +GR++F  M  
Sbjct: 364 AIILGLAVNGRGEEAIDMFYRML-RALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTE 422

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
            YNI+P + HYGCL+D+L RAG + EAL  +  MPMKP++ IW +LL A C+ + +  + 
Sbjct: 423 AYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLL-ASCRVYGNSEIG 481

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           E  A++++E +    S  Y+LLS +YA + RW DV  +R+++ +KG+ KEPGCS IE++G
Sbjct: 482 ELAAERLLELDPD-NSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNG 540

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
           I HEF A D SHP  K+IY  L+ +   L++ GY PD ++  +    ++ KQ  L  HSE
Sbjct: 541 IIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEE-KQKVLYWHSE 599

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LA+   +L  +  + IR+ KNLR+C DCH   KLIS+++  E+IVRDR RFHHF+ GSC
Sbjct: 600 KLAVTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSC 659

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 660 SCKDYW 665



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 48/352 (13%)

Query: 106 RACARSVDA--KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA-----H 158
           RA + SV      +A+  + RM+  G   PD +TFP  LKA A     +    +     H
Sbjct: 21  RAASSSVSGHGAEEAVAGYVRML-AGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIH 79

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML----ERSLVSWNVMIDAFVQF 214
           AH+ K G+ S+ +  +SLI  YA+ G    A  V +         + V WN +I    + 
Sbjct: 80  AHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRS 139

Query: 215 GEFD-SALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G F+ S       ++        T+ S+ SAC     L LGM  H  +L   +  ++ D 
Sbjct: 140 GRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVL---ESGVLPDQ 196

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N+L+DMY +CG +D A  +FE M  R + SW S+I G    G+ + A   FD +   
Sbjct: 197 RVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPER 256

Query: 334 ESFS------------------------------PNSITFVGVLSACNHRGMVSEGRDYF 363
           ++ +                               +  T V V++AC   G +  G ++ 
Sbjct: 257 DTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWA 315

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            + +    I   +     L+D+ ++ G+I+ AL +  +M  + D   W +++
Sbjct: 316 RIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR-DKFTWTAII 366


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/617 (38%), Positives = 340/617 (55%), Gaps = 48/617 (7%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL+S    +++++ ++IH+      L  +   ++  + I  +     +  A   F ++ 
Sbjct: 285 SLLNSCNTPEALNRGRRIHSHISERGL--ETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 95  NPNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +  +W+ +I   A+S     ++  +   L +RM  +G V P+K TF   LKAC+   A
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREG-VFPNKVTFMSILKACSVHGA 401

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL------------------------ 186
             QG+Q HA I K G  SD  +  ++ + YA CG +                        
Sbjct: 402 LEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTM 461

Query: 187 -----DL--ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
                DL  A KVF  M  R++VSWN+MI  + Q G+     +L   M++  F+PD  T 
Sbjct: 462 YIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTI 521

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            SI  AC  L+ L  G   HA  ++     L +D +V  SLI MY KCG +  AR VF+ 
Sbjct: 522 ISILEACGALSALERGKLVHAEAVKL---GLESDTVVATSLIGMYSKCGEVTEARTVFDK 578

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           +  RD  +WN+++ G+  HG    A+  F R++ +E   PN ITF  V+SAC   G+V E
Sbjct: 579 ISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRML-KERVPPNEITFTAVISACGRAGLVQE 637

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           GR+ F +M  ++ + P  +HYGC+VDLL RAG + EA   +  MP +PD  +W +LL AC
Sbjct: 638 GREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGAC 697

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
            K H +V L+E  A  ++  E    S VYV LS +YA A RW+D   VRK+M DKG+ K+
Sbjct: 698 -KSHDNVQLAEWAAHHILRLEPSNAS-VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKD 755

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDD 537
            G SSIEIDG  H F A D +HP+   I+  L+++ +++K  GYTPD       VDE+  
Sbjct: 756 RGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQ- 814

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K+ +L  HSE+LAIA G+L   PG PIR+ KNLRVC DCH  TK IS+I   EI+ RD 
Sbjct: 815 -KERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDA 873

Query: 598 ARFHHFKDGSCSCMDYW 614
            RFH+FK+G+CSC D+W
Sbjct: 874 NRFHYFKNGTCSCGDFW 890



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 217/442 (49%), Gaps = 34/442 (7%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY---SRIIHFASFADLDYAF 87
           N +  ++    + +     K +H Q     L +    + IY   S I  ++ F D+    
Sbjct: 79  NTYGCIIEHCAKLRRFEDGKMVHKQ-----LDELGLAIDIYLGNSLINFYSKFGDVASVE 133

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF ++   +  TW+++I A A + +   +A   F+RM +  N+ P++ TF   LKAC  
Sbjct: 134 QVFRRMTLRDVVTWSSMIAAYAGN-NHPAKAFDTFERM-KDANIEPNRITFLSILKACNN 191

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                + ++ H  +   G+ +DV +  +LI  Y+ CG + LA ++F  M ER++VSW  +
Sbjct: 192 YSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAI 251

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I A  Q  + + A +L+ +M Q    P+  TF S+ ++C     L+ G   H++I    +
Sbjct: 252 IQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI---SE 308

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA---- 322
             L TDV+V N+LI MYCKC  +  AR+ F+ M KRD+ SW+++I G+A  G  +     
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368

Query: 323 -ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
              +  +R+  E  F PN +TF+ +L AC+  G + +GR      I++            
Sbjct: 369 EVFQLLERMRREGVF-PNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTA 426

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK----KHASVVLSEEVAKQVIE 437
           + ++ A+ G+I EA  + S M  K + V W SLL    K      A  V SE   + V+ 
Sbjct: 427 IFNMYAKCGSIYEAEQVFSKMENK-NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVS 485

Query: 438 --------SEGGICSGVYVLLS 451
                   ++ G  + V+ LLS
Sbjct: 486 WNLMIAGYAQSGDIAKVFELLS 507



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 196/430 (45%), Gaps = 62/430 (14%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIH----AQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           N  + LS L  C + S L   ++IH    A  + T +      + +YS+        ++ 
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC------GEIS 231

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A  +F +++  N  +W  +I+A A+      +A  L+++M++ G + P+  TF   L +
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLN-EAFELYEKMLQAG-ISPNAVTFVSLLNS 289

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C    A ++G++ H+HI +RGL +DV + N+LI  Y  C  +  A + FD M +R ++SW
Sbjct: 290 CNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISW 349

Query: 205 NVMIDAFVQFG-----EFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWA 257
           + MI  + Q G       D   +L  RM  + +F P+  TF SI  AC+    L  G   
Sbjct: 350 SAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF-PNKVTFMSILKACSVHGALEQGRQI 408

Query: 258 HAYILR---HCDHSLVT-------------------------DVLVNNSLIDMYCKCGSL 289
           HA I +     D SL T                         +V+   SL+ MY KCG L
Sbjct: 409 HAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDL 468

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
             A +VF  M  R++ SWN +I G+A  G      +    + V E F P+ +T + +L A
Sbjct: 469 TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKV-EGFQPDRVTIISILEA 527

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAGNIDEALHLVSNMPMK 405
           C     +  G+     +++   +   LE        L+ + ++ G + EA  +   +  +
Sbjct: 528 CGALSALERGK-----LVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR 582

Query: 406 PDAVIWRSLL 415
            D V W ++L
Sbjct: 583 -DTVAWNAML 591



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 160/325 (49%), Gaps = 10/325 (3%)

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++  P S +   + R C        +AI L   +I+Q  +L + +T+   ++ CA L  F
Sbjct: 38  ELAGPRSVSGGEVWRLC--KAGRLKEAIQLLG-IIKQRGLLVNSNTYGCIIEHCAKLRRF 94

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GK  H  + + GL  D+Y+ NSLI+FY+  G +    +VF  M  R +V+W+ MI A+
Sbjct: 95  EDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAY 154

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                   A   F RM+    EP+  TF SI  AC   + L      H  +       + 
Sbjct: 155 AGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVK---ASGME 211

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           TDV V  +LI MY KCG + +A ++F+ M +R++ SW +II   A H +   A + ++++
Sbjct: 212 TDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKM 271

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
            ++   SPN++TFV +L++CN    ++ GR      I+E  +   +     L+ +  +  
Sbjct: 272 -LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS-HISERGLETDVVVANALITMYCKCN 329

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
            I +A      M  K D + W +++
Sbjct: 330 CIQDARETFDRMS-KRDVISWSAMI 353



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 149/333 (44%), Gaps = 38/333 (11%)

Query: 25  RNEGSFNNHSSLLSSLTECK---SMSQLKQIHAQ----------ALRTAL---------- 61
           R EG F N  + +S L  C    ++ Q +QIHA+          +L+TA+          
Sbjct: 378 RREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSI 437

Query: 62  --------PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
                     ++K ++ ++ ++  +    DL  A +VF ++   N  +WN +I   A+S 
Sbjct: 438 YEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSG 497

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
           D   +   L   M  +G   PD+ T    L+AC  L A  +GK  HA   K GL SD  +
Sbjct: 498 DI-AKVFELLSSMKVEG-FQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVV 555

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILF 231
             SLI  Y+ CG +  A  VFD +  R  V+WN M+  + Q G    A+ LF+RM +   
Sbjct: 556 ATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERV 615

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            P+  TF ++ SAC     +  G     + +   D  +         ++D+  + G L  
Sbjct: 616 PPNEITFTAVISACGRAGLVQEGR--EIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQE 673

Query: 292 ARQVFESMP-KRDLTSWNSIILGFALHGRAEAA 323
           A +  + MP + D++ W++++     H   + A
Sbjct: 674 AEEFIQRMPCEPDISVWHALLGACKSHDNVQLA 706


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/599 (38%), Positives = 347/599 (57%), Gaps = 15/599 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH 76
           ++ + R  G   N+ ++   L  C     ++   +IH+  ++      H   +  S +  
Sbjct: 101 LYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY--DHDVFVKTSLLSL 158

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    + D A +VF  I + N  +W  +I     S   + +AI  F++++E G + PD  
Sbjct: 159 YVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFR-EAIGAFKKLLEMG-LKPDSF 216

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +    L ACA L   + G+    +I   G+  +V++  SL+  Y  CG+L+ AN +F  M
Sbjct: 217 SLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAM 276

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            E+ +VSW+ MI  +   G    AL LF +MQ    +PD YT   + SACA L  L LG+
Sbjct: 277 PEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI 336

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           WA + + R+     +++ ++  +LIDMY KCGS+  A ++F +M K+D   WN++++G +
Sbjct: 337 WASSLMDRN---EFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLS 393

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           ++G A+A    F  LV +    P+  TF+G+L  C H G V+EGR +F+ M   +++TP 
Sbjct: 394 MNGHAKAVFSLFS-LVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPS 452

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHYGC+VDLL RAG ++EA  L++NMPMKP+AV+W +LL   CK H    L+E+V K++
Sbjct: 453 IEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG-CKLHKDTHLAEQVLKKL 511

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           IE E    SG YV LS +Y+   RW +   +R  M ++ + K   CS IEIDGI HEF  
Sbjct: 512 IELEPW-NSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLV 570

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SH  +++IY  LD +  +LK+ G+ P  ++  + D  ++ K+  L  HSE+LA+A G
Sbjct: 571 GDKSHWLSEKIYAKLDELGRELKAVGHVPT-TEFVLFDIEEEEKEHFLGYHSEKLAVAFG 629

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++   P   IRV KNLRVC DCH+  KLIS+I   EII+RD  RFH F DGSCSC DYW
Sbjct: 630 LIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 210/386 (54%), Gaps = 16/386 (4%)

Query: 47  SQLKQIHAQALRTALPQQHKTL-LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +QLK IHA+ LR  L Q +  L LI    + F S    +Y+  VF Q++ PN F WNT+I
Sbjct: 30  NQLKHIHARLLRLHLDQDNYLLNLILCCALDFGS---TNYSKLVFSQVKEPNIFLWNTMI 86

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           R    S D    AI L+  M   G  LP+  T PF LKACA       G + H+ + K G
Sbjct: 87  RGLV-SKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
              DV++  SL+  Y  C + D A KVFD++ ++++VSW  +I  ++  G F  A+  F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 226 R-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           + +++  +PD ++   + +ACA L   + G W   YI    D  +  +V V  SL+DMY 
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI---SDSGMGRNVFVATSLLDMYV 261

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG+L+ A  +F +MP++D+ SW+++I G+A +G  + AL  F ++   E+  P+  T V
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM-QSENLKPDCYTMV 320

Query: 345 GVLSACNHRGMVSEGRDYFDVM-INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           GVLSAC   G +  G     +M  NE+   PVL     L+D+ ++ G++ +A  + + M 
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK 378

Query: 404 MKPDAVIWRSLL-DACCKKHASVVLS 428
            K D V+W +++       HA  V S
Sbjct: 379 -KKDRVVWNAMMVGLSMNGHAKAVFS 403



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 143/291 (49%), Gaps = 13/291 (4%)

Query: 133 PDKHTFPFALKACAYLFA----FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           P    F  AL+   YL      F+Q K  HA + +  L  D Y+ N ++      G  + 
Sbjct: 7   PSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNY 66

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAG 247
           +  VF  + E ++  WN MI   V    FD A+ L+  M+   F P+ +T   +  ACA 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 248 LATLSLGMWAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
              + LG+  H+ +++   DH    DV V  SL+ +Y KC + D A +VF+ +P +++ S
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDH----DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS 182

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W +II G+   G    A+  F +L +E    P+S + V VL+AC   G  + G ++ D  
Sbjct: 183 WTAIITGYISSGHFREAIGAFKKL-LEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRY 240

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           I++  +   +     L+D+  + GN++ A  + S MP K D V W +++  
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK-DIVSWSTMIQG 290


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/585 (40%), Positives = 341/585 (58%), Gaps = 20/585 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYAFRVFYQ 92
           S+L +  + +++   +++HA ALR  L +    L+  S  +   +     ++ A  VF  
Sbjct: 124 SVLPACADARALHACREVHAFALRAGLDE----LVNVSTAVLDAYCKCGAVEAARAVFDC 179

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   NS +WN +I   A + +A  +A+ LF RM+++G  + D      AL+AC  L    
Sbjct: 180 MPVRNSVSWNAMIDGYADNGNAT-EAMALFWRMVQEGVDVTDASVLA-ALQACGELGYLD 237

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVMIDAF 211
           + ++ H  + + GL S+V + N+LI  YA C   DLA +VF+ +  +++ +SWN MI  F
Sbjct: 238 EVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGF 297

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q    + A +LF RMQ+    PD +T  S+  A A ++      W H Y +RH    L 
Sbjct: 298 TQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRH---QLD 354

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            DV V  +LIDMY KCG + IAR++F+S   R + +WN++I G+  HG  +AA++ F+ +
Sbjct: 355 QDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEM 414

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
               S  PN  TF+ VL+AC+H G+V EG+ YF  M  +Y + P +EHYG +VDLL RAG
Sbjct: 415 KGTGSL-PNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAG 473

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY-VL 449
            +DEA   + NMP++P   ++ ++L AC K H +V L+EE A+ + E   G   GVY VL
Sbjct: 474 KLDEAWSFIKNMPIEPGISVYGAMLGAC-KLHKNVELAEESAQIIFEL--GPEEGVYHVL 530

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L+ +YA+A  W DV  VR  M  KG+ K PG S I++    H F++G T+H   K IY  
Sbjct: 531 LANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYAR 590

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L  + E++K  GY PD    ++ D  DD K   L  HSE+LAIA G++   PG  I++ K
Sbjct: 591 LAKLIEEIKDMGYVPDTD--SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKK 648

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH  TKLIS +   EII+RD  RFHHFKDG CSC DYW
Sbjct: 649 NLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 137/286 (47%), Gaps = 8/286 (2%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P   TF   LK CA     + G+  HA +  RGL S+   + +L + Y  C     A +V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLA 249
           FD M  R  V+WN ++  + + G   SA++   RMQ       PD  T  S+  ACA   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L      HA+ LR     LV    V+ +++D YCKCG+++ AR VF+ MP R+  SWN+
Sbjct: 134 ALHACREVHAFALRAGLDELVN---VSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNA 190

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+A +G A  A+  F R+ V+E       + +  L AC   G + E R   ++++  
Sbjct: 191 MIDGYADNGNATEAMALFWRM-VQEGVDVTDASVLAALQACGELGYLDEVRRVHELLV-R 248

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             ++  +     L+   A+    D A  + + +  K   + W +++
Sbjct: 249 VGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMI 294



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 132/268 (49%), Gaps = 10/268 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           A RVF ++ + +   WN ++   AR+    +  +A+V  Q   E+G   PD  T    L 
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQG--EEGGERPDSVTLVSVLP 127

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           ACA   A    ++ HA   + GL   V ++ +++  Y  CG ++ A  VFD M  R+ VS
Sbjct: 128 ACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MID +   G    A+ LF RM Q   +    +  +   AC  L  L      H  ++
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLV 247

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
           R     L ++V V N+LI  Y KC   D+A QVF  +  K+   SWN++ILGF  +   E
Sbjct: 248 R---VGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPE 304

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSA 349
            A + F R+ + E+  P+S T V V+ A
Sbjct: 305 DAERLFARMQL-ENVRPDSFTLVSVIPA 331


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/539 (41%), Positives = 319/539 (59%), Gaps = 14/539 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A F  LD A R+F ++   N  TW T++ A A +   K +A+     M   G V P+ +
Sbjct: 125 YAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDG-VAPNAY 183

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L AC      +     HA   K GL SDV++ +SLI  Y   G LD   +VFD M
Sbjct: 184 TFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEM 240

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGM 255
           + R LV WN +I  F Q G+   A++LF RM+   F  +  T  S+  AC G+  L  G 
Sbjct: 241 VTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGR 300

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA++L++       D++++N+L+DMYCKCGSL+ A  +F  MP+RD+ SW+++I G A
Sbjct: 301 QVHAHVLKY-----ERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLA 355

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G++  AL+ FD L+  E  +PN IT VGVL AC+H G+V +G  YF  M   + I P 
Sbjct: 356 QNGKSAEALRVFD-LMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPE 414

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            EH+ C+VDLL RAG +DEA+  + +M ++PDAVIWR+LL A C+ H S  L+   A+++
Sbjct: 415 REHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGA-CRMHKSGNLAAYAAREI 473

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           ++ E     G  VLLS  YA  R+W D     K M D+G+ KEPG S IE++   H F A
Sbjct: 474 LKLEPDD-QGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIA 532

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SHP +  I   L+ +  ++ + GY P  ++  + D   + K+  L+ HSE++AIA G
Sbjct: 533 GDLSHPCSDTIVQELNRLIGRISALGYVPQ-TEFVLQDLAIEQKEDLLKYHSEKMAIAFG 591

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            ++   G PIR+ KNLR+C DCH   KL+S+     II+RD  RFHHF+DG+CSC DYW
Sbjct: 592 TMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 21/293 (7%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVS--------DVYINNSLIHFYASCGHLDLANKVF 193
           +K C        G+  H H+   G +S         ++++NSL+  YA  G LD A ++F
Sbjct: 79  VKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLF 138

Query: 194 DNMLERSLVSWNVMIDAFVQF-GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
           D M ER++V+W  ++ A     G  + AL+    M +    P+ YTF S+  AC     L
Sbjct: 139 DRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVL 198

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           +     HA  ++     L +DV V +SLID Y K G LD  R+VF+ M  RDL  WNSII
Sbjct: 199 AA---LHASTVK---VGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSII 252

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GFA  G    A++ F R+  +  FS N  T   VL AC    M+  GR      + +Y 
Sbjct: 253 AGFAQSGDGVGAIELFMRM-KDAGFSANQGTLTSVLRACTGMVMLEAGRQVH-AHVLKYE 310

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
              +L  +  L+D+  + G++++A  L   MP + D + W +++    +   S
Sbjct: 311 RDLIL--HNALLDMYCKCGSLEDAEALFHRMPQR-DVISWSTMISGLAQNGKS 360



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 28/196 (14%)

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYI-----LRHCDHSLVTDVLVNNSLIDMYCKCGS 288
           D  +   +   C    T   G   H ++     L H        + V+NSL+ MY K G 
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFA-LHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           LD A ++F+ MP+R++ +W +++   A   GR E AL++   +   +  +PN+ TF  VL
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAM-WRDGVAPNAYTFSSVL 189

Query: 348 SACN--------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            AC         H   V  G D  DV +              L+D   + G++D    + 
Sbjct: 190 GACGTPGVLAALHASTVKVGLDS-DVFVRS-----------SLIDAYMKLGDLDGGRRVF 237

Query: 400 SNMPMKPDAVIWRSLL 415
             M  + D V+W S++
Sbjct: 238 DEMVTR-DLVVWNSII 252



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   ++ G   N  +L S L  C  M  L   +Q+HA  L+       + L++++ ++ 
Sbjct: 267 LFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK-----YERDLILHNALLD 321

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +     L+ A  +F+++   +  +W+T+I   A++     +A+ +F  M  +G V P++
Sbjct: 322 MYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQN-GKSAEALRVFDLMKSEG-VAPNR 379

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    L AC++                 GLV D +      +++ S        K+F  
Sbjct: 380 ITMVGVLFACSHA----------------GLVEDGW------YYFRSM------KKLFGI 411

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM 255
             ER     N M+D   + G+ D A++  R M +  EPD   ++++  AC    + +L  
Sbjct: 412 QPERE--HHNCMVDLLGRAGKLDEAVEFIRDMNL--EPDAVIWRTLLGACRMHKSGNLAA 467

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDM 282
           +A   IL+         VL++N+  D+
Sbjct: 468 YAAREILKLEPDDQGARVLLSNTYADL 494


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/528 (40%), Positives = 322/528 (60%), Gaps = 10/528 (1%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           RVF  ++     +WN L+   A++ D + +A+ L+ +M + G + PD  T    L AC+ 
Sbjct: 265 RVFDLMDTKTVSSWNALLCGYAQNSDPR-KALDLYLQMTDSG-LDPDWFTIGSLLLACSR 322

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           + +   G++ H    + GL  D +I  SL+  Y  CG    A  +FD M  RSLVSWNVM
Sbjct: 323 MKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVM 382

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + Q G  D A+ LFR+M     +P       +  AC+ L+ L LG   H + L+   
Sbjct: 383 IAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA-- 440

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  D+ V++S+IDMY K G + +++++F+ + ++D+ SWN II G+ +HGR + AL+ 
Sbjct: 441 -HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALEL 499

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F++++      P+  TF G+L AC+H G+V +G +YF+ M+N +NI P LEHY C+VD+L
Sbjct: 500 FEKML-RLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDML 558

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG ID+AL L+  MP  PD+ IW SLL +C + H ++ L E+VA +++E E       
Sbjct: 559 GRAGRIDDALRLIEEMPGDPDSRIWSSLLSSC-RIHGNLGLGEKVANKLLELEPEKPEN- 616

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVL+S ++A + +W+DV  VR  M D G+ K+ GCS IE+ G  H F  GD   P+ +++
Sbjct: 617 YVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEV 676

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
                 ++ K+ S GYTPD + + + D  ++ K   LR HSE+LAI+ G+LN   G+P+R
Sbjct: 677 RETWRRLEVKISSIGYTPD-TGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVR 735

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V+KNLR+C DCH   K IS++ N +I+VRD  RFHHF+DG CSC DYW
Sbjct: 736 VYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 12/383 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR-VFYQIE 94
           LL +  + K +   +++H     +A  Q     ++ +RII   S        R VF ++ 
Sbjct: 111 LLQACGQRKDIEVGRRLHEMV--SASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 168

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             N F WN ++ A  R+ +    A+ +F  +I      PD  T P  +KACA L     G
Sbjct: 169 RKNLFQWNAIVSAYTRN-ELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 227

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA-NKVFDNMLERSLVSWNVMIDAFVQ 213
           +  H    K  LVSDV++ N+LI  Y  CG ++ A  +VFD M  +++ SWN ++  + Q
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +   AL L+ +M     +PD +T  S+  AC+ + +L  G   H + LR   + L  D
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR---NGLAVD 344

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             +  SL+ +Y  CG    A+ +F+ M  R L SWN +I G++ +G  + A+  F R ++
Sbjct: 345 PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF-RQML 403

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   P  I  + V  AC+    +  G++     +  + +T  +     ++D+ A+ G I
Sbjct: 404 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGGCI 462

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
             +  +   +  K D   W  ++
Sbjct: 463 GLSQRIFDRLREK-DVASWNVII 484



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 12/320 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ- 92
            SLL + +  KS+   ++IH  ALR  L        I   ++         +A +V +  
Sbjct: 314 GSLLLACSRMKSLHYGEEIHGFALRNGLAVDP---FIGISLLSLYICCGKPFAAQVLFDG 370

Query: 93  IENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +E+ +  +WN +I     S +  P +AI LF++M+  G + P +        AC+ L A 
Sbjct: 371 MEHRSLVSWNVMI--AGYSQNGLPDEAINLFRQMLSDG-IQPYEIAIMCVCGACSQLSAL 427

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GK+ H    K  L  D+++++S+I  YA  G + L+ ++FD + E+ + SWNV+I  +
Sbjct: 428 RLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGY 487

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G    AL+LF +M ++  +PD +TF  I  AC+    +  G+     +L    H++ 
Sbjct: 488 GIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNL--HNIE 545

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDR 329
             +     ++DM  + G +D A ++ E MP   D   W+S++    +HG      K  ++
Sbjct: 546 PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANK 605

Query: 330 LVVEESFSPNSITFVGVLSA 349
           L+  E   P +   +  L A
Sbjct: 606 LLELEPEKPENYVLISNLFA 625


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/618 (38%), Positives = 350/618 (56%), Gaps = 34/618 (5%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR 73
           Q H  S+ N   ++    N  +L+S   +C  M++  ++     +  +   +  +  YS+
Sbjct: 255 QVHGFSVRNGLVDDVFVGN--ALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQ 312

Query: 74  IIHFASFADLDYAFRVFYQIENPN----SFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
           I  F      D A  +F  ++  +      TW+ +I   A+      +A+ +F++M   G
Sbjct: 313 IGSF------DSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHG-FEALDVFRQMQLYG 365

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-------VSDVYINNSLIHFYAS 182
            + P+  T    L  CA + A   GKQ HA++ K  L         D+ + N LI  YA 
Sbjct: 366 -LEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424

Query: 183 CGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRM---QILFEPDGYT 237
           C    +A  +FD++   ++++V+W VMI  + Q GE + ALKLF ++   +   +P+ +T
Sbjct: 425 CKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFT 484

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
                 ACA L  L LG   HAY LR+ + S V  + V N LIDMY K G +D AR VF+
Sbjct: 485 LSCALMACARLGELRLGRQLHAYALRNENESEV--LYVGNCLIDMYSKSGDIDAARAVFD 542

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
           +M  R++ SW S++ G+ +HGR E AL  FD++  +  F+ + ITF+ VL AC+H GMV 
Sbjct: 543 NMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQ-KLGFAVDGITFLVVLYACSHSGMVD 601

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +G  YF  M+  + ITP  EHY C+VDLL RAG ++EA+ L+ NM M+P AV+W +LL A
Sbjct: 602 QGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSA 661

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
             + HA++ L E  A ++ E  G    G Y LLS +YA+ARRW DV  +R LM   G+ K
Sbjct: 662 S-RIHANIELGEYAASKLTEL-GAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRK 719

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PGCS I+       FF GD SHP+++QIY  L  + +++K  GY P  S A  + ++DD
Sbjct: 720 RPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFA--LHDVDD 777

Query: 538 GKQSSLRL-HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
            ++  L   HSE+LA+A GIL   PG PIR+ KNLR+C DCH     IS I + EI++RD
Sbjct: 778 EEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRD 837

Query: 597 RARFHHFKDGSCSCMDYW 614
            +RFHHFK GSCSC  YW
Sbjct: 838 SSRFHHFKKGSCSCRSYW 855



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 205/431 (47%), Gaps = 58/431 (13%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI-- 93
           +L +  E  S+     +HA      L       +  S +  +     LD A ++F ++  
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANGLGSN--VFICNSIVAMYGRCGALDDAHQMFDEVLE 190

Query: 94  -ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN-----VLPDKHTFPFALKACAY 147
            +  +  +WN+++ A  +   ++    + F+     GN     + PD  T    L ACA 
Sbjct: 191 RKIEDIVSWNSILAAYVQGGQSRTALRIAFR----MGNHYSLKLRPDAITLVNILPACAS 246

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           +FA   GKQ H    + GLV DV++ N+L+  YA C  ++ ANKVF+ + ++ +VSWN M
Sbjct: 247 VFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAM 306

Query: 208 IDAFVQFGEFDSALKL-----------------------------------FRRMQIL-F 231
           +  + Q G FDSAL L                                   FR+MQ+   
Sbjct: 307 VTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGL 366

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD----HSLVTDVLVNNSLIDMYCKCG 287
           EP+  T  S+ S CA +  L  G   HAY++++      +    D+LV N LIDMY KC 
Sbjct: 367 EPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCK 426

Query: 288 SLDIARQVFESMPKRD--LTSWNSIILGFALHGRAEAALKYFDRLVVEE-SFSPNSITFV 344
           S  +AR +F+S+  +D  + +W  +I G+A HG A  ALK F ++  ++ S  PN+ T  
Sbjct: 427 SYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLS 486

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
             L AC   G +  GR      +   N + VL    CL+D+ +++G+ID A  +  NM +
Sbjct: 487 CALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL 546

Query: 405 KPDAVIWRSLL 415
           + + V W SL+
Sbjct: 547 R-NVVSWTSLM 556



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 179/347 (51%), Gaps = 19/347 (5%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+S L +CK++   K  H Q       +   +  + + I   AS   +    R+     +
Sbjct: 33  LISLLRQCKTLINAKLAHQQIFVHGFTEMF-SYAVGAYIECGASAEAVSLLQRLI--PSH 89

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVL-FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
              F WN LIR   RSV        L F   +++   LPD +TFPF LKAC  + +   G
Sbjct: 90  STVFWWNALIR---RSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHG 146

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSWNVMIDAF 211
              HA +   GL S+V+I NS++  Y  CG LD A+++FD +LER    +VSWN ++ A+
Sbjct: 147 ASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAY 206

Query: 212 VQFGEFDSALKLFRRM----QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           VQ G+  +AL++  RM     +   PD  T  +I  ACA +  L  G   H + +R   +
Sbjct: 207 VQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVR---N 263

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            LV DV V N+L+ MY KC  ++ A +VFE + K+D+ SWN+++ G++  G  ++AL  F
Sbjct: 264 GLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLF 323

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            +++ EE    + IT+  V++    +G   E  D F  M   Y + P
Sbjct: 324 -KMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQM-QLYGLEP 368


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 348/609 (57%), Gaps = 53/609 (8%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF---ADLDYAFRVFYQIENPNS-FTW 101
           M Q K+ H Q +   L     +L     II F++     D+DYA  +  +   P + F +
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSL---RPIISFSALDPSGDIDYALLLLLRTSTPPTVFLF 57

Query: 102 NTLIRACARSVDAKP----QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           NT IR  +R+   +P     +++LF RM    ++ P+  TF F  + C+   AF  G+Q 
Sbjct: 58  NTTIRGFSRA--RRPGSLLSSVLLFVRM-GVLSLAPNNFTFTFLFQGCSNCVAFDLGRQF 114

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD----------------------- 194
           H  + K     DV++ NS+I FY+ CG L+ A  VFD                       
Sbjct: 115 HGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNI 174

Query: 195 --------NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
                    M ER+ +SWN+MI  + Q G+   AL LFR MQ+L  EP+     S+ SAC
Sbjct: 175 LEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSAC 234

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           + L  L  G W H YI + C   +  D +++ +LIDMY KCGS+D+A Q F +  KRD++
Sbjct: 235 SQLGALDHGCWVHCYIGKKC---VRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVS 291

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           ++ + I G A++G +E AL+ F+++   E  SP+ ++++ VL AC+H G V +G  YF  
Sbjct: 292 AYTAAISGLAMNGCSEEALQLFEQMK-GEGISPDGVSYIAVLCACSHAGWVEKGFHYFAS 350

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M + + I P L+HY C+VDLL RAG ++EA   V++MP+KPD VIW +LL AC + + + 
Sbjct: 351 MSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGAC-RVYGNA 409

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            + + V   ++ES+     G Y+LLS +YA + +  D   VRK M  + V + PGCS IE
Sbjct: 410 EMGQRVGSLLVESDQNH-DGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIE 468

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           + G  HEFF+GD SH +T++IY   + I +++K  GY  + ++A + D  ++ K++ +  
Sbjct: 469 VAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREE-TRAVVFDVEEEEKEAVIGH 527

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LA+A G L  K G  +R+ KN+R+C DCH   KL+S++F  +I +RDR  FHHF++
Sbjct: 528 HSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEE 587

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 588 GLCSCKDYW 596


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 338/585 (57%), Gaps = 23/585 (3%)

Query: 42  ECKSMSQLKQIHAQALRTAL-----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           E  SM+Q  Q+HA+ L++        Q    L  +S +   +   DL+YA  +   +  P
Sbjct: 2   EITSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSAL---SPSGDLNYARHILRTLHTP 58

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV-----LPDKHTFPFALKACAYLFAF 151
           NSF +NT+IRA + S D   +A  LF  M    +       PD  T+PF LKAC+     
Sbjct: 59  NSFYYNTMIRAYSDSTDPT-RAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHA 117

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ H  +FK G+ SD YINN+LIH Y+  G  +LA KVFD M +R +VSW  +ID F
Sbjct: 118 RFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGF 177

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           V       A++LF  M +   EP+  T  S+  ACA    L+ G   H+++    + +  
Sbjct: 178 VDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVK---EKNFS 234

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           ++  V+ +LIDMY KCG +D A +VF+   ++D+  W +II G A HG    A+++F+ +
Sbjct: 235 SNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENM 294

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +     +      VLSA  + G+VSEG  +F   + ++ I P ++HYGC+VD+L RAG
Sbjct: 295 K-KSDVKMDERAITAVLSAYRNAGLVSEGLLFFR-RLKKHKIKPTIQHYGCVVDMLTRAG 352

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV-IESEGGICSGVYVL 449
            + +A   +  MP++PDAV+WR+L+  C K    V  SE + +++ + +     +G YVL
Sbjct: 353 RLKDAEEFIRKMPIEPDAVLWRTLIWGC-KILGDVERSERLVRELELLNMDSRDTGSYVL 411

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L  VYA+  +W +    R+LM  +G+ K P CS IEIDG+ HEF AGD+ H +   +Y  
Sbjct: 412 LENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEK 471

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L+ ++E+L+  GY P  S+  +++  DD K S L  HSE+LA++ G++   PG  IR+ K
Sbjct: 472 LEDVEERLRGEGYNPIVSEV-LLEIDDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVK 530

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLR C+DCH   KLIS+++  +IIVRDR RFHHF  G+CSC D W
Sbjct: 531 NLRSCEDCHSFMKLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/603 (39%), Positives = 330/603 (54%), Gaps = 53/603 (8%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           Q+HA  L   L     T L+ S+++ F AS  D+D +  VF  I  P+S  +N++IRA A
Sbjct: 91  QVHAHMLLRGL---QPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYA 147

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           R   A+      F   +       D  TFPF LK+   L +   GK  H  I + GL  D
Sbjct: 148 RYGFAERTVATYFS--MHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           +Y+  SLI  Y  CG ++ A KVFDNM  R + SWN ++  + + G  D+AL +F RM  
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 265

Query: 230 ------------------------LFE----------PDGYTFQSITSACAGLATLSLGM 255
                                   LF+          P+  T  S+  ACA L+TL  G 
Sbjct: 266 RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGR 325

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILG 313
             H      C   L ++  V  +L  MY KCGSL  AR  F+ + +  ++L +WN++I  
Sbjct: 326 QIHELA---CRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 382

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A +G    A+  F R +++    P+ ITF G+LS C+H G+V  G  YF+ M   Y+I 
Sbjct: 383 YASYGHGLQAVSTF-REMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSIN 441

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P +EHY C+ DLL RAG + EA  LV  MPM     IW SLL A C+KH ++ ++E  A+
Sbjct: 442 PRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLL-AACRKHRNLEMAETAAR 500

Query: 434 Q--VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           +  V+E E    +G YVLLS +YA A RW +V  +R ++  +G  K PGCS IEI+G AH
Sbjct: 501 KLFVLEPEN---TGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAH 557

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F  GDTSHPQ K+IY FL+ + EK+K+ GY PD S   + D  ++ K+ +L  HSE+LA
Sbjct: 558 MFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSY-VLHDISEEEKEFNLIAHSEKLA 616

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           +A GILN      +RV KNLR+C DCH     IS I+  E+IVRD  RFHHFK G CSC 
Sbjct: 617 VAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCG 676

Query: 612 DYW 614
           DYW
Sbjct: 677 DYW 679


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/553 (39%), Positives = 332/553 (60%), Gaps = 48/553 (8%)

Query: 67  TLLIYSRIIHFASFADL-DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
            L +    IH  S   + D A +VF   +     TWN ++    R    K   ++L    
Sbjct: 141 NLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL---- 196

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI-HFYASCG 184
                           L AC+ L     GK    HIFK       YIN  ++ H +A+CG
Sbjct: 197 ---------------VLSACSKLKDLEWGK----HIFK-------YINGGIVEHMFAACG 230

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            +D A  VFDNM  R +VSW  MID +++   F  AL LFR MQ+   +PD +T  SI  
Sbjct: 231 EMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILI 290

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L LG W    I ++ + +   D  V N+L+DMY KCG++  A++VF+ M ++D
Sbjct: 291 ACALLGALELGEWVKTCIDKNSNKN---DSFVGNALVDMYFKCGNVRKAKKVFKEMYQKD 347

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             +W ++I+G A++G  E AL  F  ++ E S +P+ IT++GVL AC    MV +G+ +F
Sbjct: 348 KFTWTTMIVGLAINGHGEEALAMFSNMI-EASVTPDEITYIGVLCAC----MVDKGKSFF 402

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M  ++ I P + HYGC+VDLL   G ++EAL ++ NMP+KP++++W S L AC + H 
Sbjct: 403 TNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGAC-RVHK 461

Query: 424 SVVLSEEVAKQVIE--SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           +V L++  AKQ++E   E G    VYVLL  +YA++++W ++  VRKLM ++G+ K PGC
Sbjct: 462 NVQLADMAAKQILELEPENG---AVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGC 518

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S +E++G  +EF AGD SHPQ+K+IY  L+ + + L   GY+PD S+   +D  ++ K++
Sbjct: 519 SLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEV-FLDLGEEDKET 577

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +L  HSE+LAIA  +++  PG+ IR+ KNLR+C DCH + KL+S+ +N E+IV+D+ RFH
Sbjct: 578 ALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFH 637

Query: 602 HFKDGSCSCMDYW 614
           HF+ GSCSC ++W
Sbjct: 638 HFRHGSCSCNNFW 650



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 187/385 (48%), Gaps = 42/385 (10%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFY 91
           S +S L +CKSM QLKQIH+  ++  L       L  +R+I F       +++YA +VF 
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDP---LFRNRVIAFCCAHESGNMNYAHQVFD 65

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            I +P+ F WNT+I+  ++   + P+  V    ++   N+ PD+ TFPF+LK      A 
Sbjct: 66  TIPHPSMFIWNTMIKGYSKI--SHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMAL 123

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GK+   H  K G  S++++  + IH ++ CG +DLA+KVFD      +V+WN+M+  +
Sbjct: 124 QHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY 183

Query: 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            +  +F    K+ + + +L            SAC+ L  L  G     YI          
Sbjct: 184 NRVKQF----KISKMLLVL------------SACSKLKDLEWGKHIFKYI---------- 217

Query: 272 DVLVNNSLID-MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               N  +++ M+  CG +D A+ VF++M  RD+ SW ++I G+        AL  F R 
Sbjct: 218 ----NGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALF-RE 272

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +   +  P+  T V +L AC   G +  G ++    I++ +          LVD+  + G
Sbjct: 273 MQMSNVKPDEFTMVSILIACALLGALELG-EWVKTCIDKNSNKNDSFVGNALVDMYFKCG 331

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
           N+ +A  +   M  K D   W +++
Sbjct: 332 NVRKAKKVFKEMYQK-DKFTWTTMI 355


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/599 (37%), Positives = 347/599 (57%), Gaps = 15/599 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH 76
           ++ + R  G   N+ ++   L  C     ++   +IH+  ++      H   +  S +  
Sbjct: 101 LYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY--DHDVFVKTSLLSL 158

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    + D A +VF  I + N  +W  +I     S   + +AI  F++++E G + PD  
Sbjct: 159 YVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFR-EAIGAFKKLLEMG-LKPDSF 216

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +    L ACA L   + G+    +I   G+  +V++  SL+  Y  CG+L+ AN +F  M
Sbjct: 217 SLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAM 276

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            E+ +VSW+ MI  +   G    AL LF +MQ    +PD YT   + SACA L  L LG+
Sbjct: 277 PEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI 336

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           WA + + R+     +++ ++  +LIDMY KCGS+  A ++F +M ++D   WN++++G +
Sbjct: 337 WASSLMDRN---EFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLS 393

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           ++G A+A    F  LV +    P+  TF+G+L  C H G V+EGR +F+ M   +++TP 
Sbjct: 394 MNGHAKAVFSLFS-LVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPS 452

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHYGC+VDLL RAG ++EA  L++NMPMKP+AV+W +LL   CK H    L+E+V K++
Sbjct: 453 IEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG-CKLHKDTHLAEQVLKKL 511

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           IE E    SG YV LS +Y+   RW +   +R  M ++ + K   CS IEIDGI HEF  
Sbjct: 512 IELEPW-NSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLV 570

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SH  +++IY  LD +  +LK+ G+ P  ++  + D  ++ K+  L  HSE+LA+A G
Sbjct: 571 GDKSHWLSEKIYAKLDELGRELKAVGHVPT-TEFVLFDIEEEEKEHFLGYHSEKLAVAFG 629

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++   P   IRV KNLRVC DCH+  KLIS+I   EII+RD  RFH F DGSCSC DYW
Sbjct: 630 LIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 210/386 (54%), Gaps = 16/386 (4%)

Query: 47  SQLKQIHAQALRTALPQQHKTL-LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +QLK IHA+ LR  L Q +  L LI    + F S    +Y+  VF Q++ PN F WNT+I
Sbjct: 30  NQLKHIHARLLRLHLDQDNYLLNLILCCALDFGS---TNYSKLVFSQVKEPNIFLWNTMI 86

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           R    S D    AI L+  M   G  LP+  T PF LKACA       G + H+ + K G
Sbjct: 87  RGLV-SKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
              DV++  SL+  Y  C + D A KVFD++ ++++VSW  +I  ++  G F  A+  F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 226 R-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           + +++  +PD ++   + +ACA L   + G W   YI    D  +  +V V  SL+DMY 
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI---SDSGMGRNVFVATSLLDMYV 261

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG+L+ A  +F +MP++D+ SW+++I G+A +G  + AL  F ++   E+  P+  T V
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM-QSENLKPDCYTMV 320

Query: 345 GVLSACNHRGMVSEGRDYFDVM-INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           GVLSAC   G +  G     +M  NE+   PVL     L+D+ ++ G++ +A  + + M 
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK 378

Query: 404 MKPDAVIWRSLL-DACCKKHASVVLS 428
            K D V+W +++       HA  V S
Sbjct: 379 RK-DRVVWNAMMVGLSMNGHAKAVFS 403



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 143/291 (49%), Gaps = 13/291 (4%)

Query: 133 PDKHTFPFALKACAYLFA----FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           P    F  AL+   YL      F+Q K  HA + +  L  D Y+ N ++      G  + 
Sbjct: 7   PTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNY 66

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAG 247
           +  VF  + E ++  WN MI   V    FD A+ L+  M+   F P+ +T   +  ACA 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 248 LATLSLGMWAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
              + LG+  H+ +++   DH    DV V  SL+ +Y KC + D A +VF+ +P +++ S
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDH----DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS 182

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W +II G+   G    A+  F +L +E    P+S + V VL+AC   G  + G ++ D  
Sbjct: 183 WTAIITGYISSGHFREAIGAFKKL-LEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRY 240

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           I++  +   +     L+D+  + GN++ A  + S MP K D V W +++  
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK-DIVSWSTMIQG 290


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 345/584 (59%), Gaps = 16/584 (2%)

Query: 36  LLSSLTECKSMS--QLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +LS L    S    QLK+IHA  LRT   +  K  L+   + +     D+ YA +VF ++
Sbjct: 12  MLSELLRASSSKPKQLKKIHAIVLRTGFSE--KNSLLTQLLENLVVIGDMCYARQVFDEM 69

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             P  F WNTL +   R+     ++++L+++M + G V PD+ T+PF +KA + L  FS 
Sbjct: 70  HKPRIFLWNTLFKGYVRN-QLPFESLLLYKKMRDLG-VRPDEFTYPFVVKAISQLGDFSC 127

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G   HAH+ K G      +   L+  Y   G L  A  +F++M  + LV+WN  +   VQ
Sbjct: 128 GFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQ 187

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    AL+ F +M     + D +T  S+ SAC  L +L +G   +    R     +  +
Sbjct: 188 TGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYD---RARKEEIDCN 244

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           ++V N+ +DM+ KCG+ + AR +FE M +R++ SW+++I+G+A++G +  AL  F  +  
Sbjct: 245 IIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQ- 303

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLARAG 390
            E   PN +TF+GVLSAC+H G+V+EG+ YF +M+  N+ N+ P  EHY C+VDLL R+G
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSG 363

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++EA   +  MP++PD  IW +LL AC   H  ++L ++VA  ++E+   I S  +VLL
Sbjct: 364 LLEEAYEFIKKMPVEPDTGIWGALLGACAV-HRDMILGQKVADVLVETAPDIGS-YHVLL 421

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A +W+ V  VR  M   G  K    SS+E +G  H F  GD SHPQ+K IY  L
Sbjct: 422 SNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKL 481

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           D I +K++  GY PD        E+++ K+ SL  HSE+LAIA G++  +PG PIRV KN
Sbjct: 482 DEILKKIRKMGYVPDTCSVFHDVEMEE-KECSLSHHSEKLAIAFGLIKGRPGHPIRVMKN 540

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR C DCH  +K +S + + EII+RD+ RFHHF++G CSC ++W
Sbjct: 541 LRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 345/589 (58%), Gaps = 17/589 (2%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           SF    S+L +++  + +   K+IH  A+R          +  + +  +A    L  A  
Sbjct: 235 SFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN--IATALVDMYAKCGSLKTARL 292

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F  +   N  +WN++I A  ++ + K +A+V+FQ+M+++G V P   +   AL ACA L
Sbjct: 293 LFDGMLERNVVSWNSMIDAYVQNENPK-EAMVIFQKMLDEG-VKPTDVSVMGALHACADL 350

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +G+  H    +  L  +V + NSLI  Y  C  +D A  +F  +  R++VSWN MI
Sbjct: 351 GDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMI 410

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F Q G    AL  F +MQ    +PD +T+ S+ +A A L+      W H  ++R+C  
Sbjct: 411 LGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC-- 468

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L  +V V  +L+DMY KCG++ IAR +F+ M +R +T+WN++I G+  HG  +AAL+ F
Sbjct: 469 -LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELF 527

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +  + +  PN +TF+ V+SAC+H G+V  G   F +M   Y+I P ++HYG +VDLL 
Sbjct: 528 EEMQ-KGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLG 586

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE--SEGGICSG 445
           RAG ++EA   +  MP+KP   ++ ++L AC + H +V  +E+VA+++ E   E G   G
Sbjct: 587 RAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC-QIHKNVNFAEKVAERLFELNPEDG---G 642

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            +VLL+ +Y +A  W  VG VR  M  +G+ K PGCS +EI    H FF+G T+HP +K+
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKK 702

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           IY FL+ +  ++K  GY PD +    ++  DD K+  L  HSE+LAI+ G+LN   G  I
Sbjct: 703 IYAFLEKLICQIKEAGYVPDTNLILGLE--DDVKEQLLSSHSEKLAISFGLLNTTAGTTI 760

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            V KNLRVC DCH  TK IS +   EIIVRD  RFHHFK+G+CSC DYW
Sbjct: 761 HVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 12/360 (3%)

Query: 3   VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALP 62
           V+ V   PP   +H H +   N    +   H + L  L  C S+ +L+ I     +  L 
Sbjct: 8   VSTVSQIPPISSSHRHFLSQRNYIPANVYEHPAALL-LERCSSLKELRHILPLIFKNGLY 66

Query: 63  QQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVL 121
           Q+H   L  ++++  F  +  +D A RVF  I+   +  + T+++  A+  D   +A+  
Sbjct: 67  QEH---LFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLD-KALKF 122

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F RM     V P  + F + LK C        GK+ H  + K G   D++    L + YA
Sbjct: 123 FVRM-RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            C  +  A KVFD M ER LVSWN ++  + Q G    AL++   M +   +P   T  S
Sbjct: 182 KCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVS 241

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           +  A + L  + +G   H Y +R    SLV    +  +L+DMY KCGSL  AR +F+ M 
Sbjct: 242 VLPAVSALRLIRIGKEIHGYAMRAGFDSLVN---IATALVDMYAKCGSLKTARLLFDGML 298

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +R++ SWNS+I  +  +   + A+  F ++ ++E   P  ++ +G L AC   G +  GR
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMVIFQKM-LDEGVKPTDVSVMGALHACADLGDLERGR 357



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 179/368 (48%), Gaps = 12/368 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    +  A +VF ++   +  +WNT++   +++  A+  A+ +   M E+ N+ P   
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR-MALEMVNLMCEE-NLKPSFI 237

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L A + L     GK+ H +  + G  S V I  +L+  YA CG L  A  +FD M
Sbjct: 238 TIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM 297

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
           LER++VSWN MIDA+VQ      A+ +F++M     +P   +      ACA L  L  G 
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           + H       +  L  +V V NSLI MYCKC  +D A  +F  +  R + SWN++ILGFA
Sbjct: 358 FIHKL---SVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFA 414

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +GR   AL YF ++    +  P++ T+V V++A     +    +    V++       V
Sbjct: 415 QNGRPIEALNYFSQMQA-RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNV 473

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASVVLSEEVA 432
                 LVD+ A+ G I  A  L+ +M  +     W +++D         A++ L EE+ 
Sbjct: 474 FVTTA-LVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQ 531

Query: 433 KQVIESEG 440
           K  I   G
Sbjct: 532 KGTIRPNG 539


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 350/594 (58%), Gaps = 22/594 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L + +  + +   K++HA AL+     ++ + +  + +  + +   +    RVF  +
Sbjct: 219 SSVLPACSHLEMLRTGKELHAYALKNGSLDEN-SFVGSALVDMYCNCKQVLSGRRVFDGM 277

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            +     WN +I   +++   K +A++LF  M E   +L +  T    + AC    AFS+
Sbjct: 278 FDRKIGLWNAMIAGYSQNEHDK-EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            +  H  + KRGL  D ++ N+L+  Y+  G +D+A ++F  M +R LV+WN MI  +V 
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 396

Query: 214 FGEFDSALKLFRRMQIL------------FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
               + AL L  +MQ L             +P+  T  +I  +CA L+ L+ G   HAY 
Sbjct: 397 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 456

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +++   +L TDV V ++L+DMY KCG L ++R+VF+ +P++++ +WN II+ + +HG  +
Sbjct: 457 IKN---NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 513

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+    R+++ +   PN +TF+ V +AC+H GMV EG   F VM  +Y + P  +HY C
Sbjct: 514 EAIDLL-RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 572

Query: 382 LVDLLARAGNIDEALHLVSNMPMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           +VDLL RAG I EA  L++ MP     A  W SLL A  + H ++ + E  A+ +I+ E 
Sbjct: 573 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGAS-RIHNNLEIGEIAAQNLIQLEP 631

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
            + S  YVLL+ +Y+SA  W+    VR+ M ++GV KEPGCS IE     H+F AGD+SH
Sbjct: 632 NVASH-YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSH 690

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           PQ++++ G+L+ + E+++  GY PD S   + +  +D K+  L  HSE+LAIA GILN  
Sbjct: 691 PQSEKLSGYLETLWERMRKEGYVPDTS-CVLHNVEEDEKEILLCGHSEKLAIAFGILNTS 749

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PG  IRV KNLRVC DCH  TK IS+I + EII+RD  RFH FK+G+CSC DYW
Sbjct: 750 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 184/389 (47%), Gaps = 20/389 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LL ++ + + M   KQIHA   +        T+   + +  +    D    ++VF +I 
Sbjct: 15  ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTV-ANTLVNLYRKCGDFGAVYKVFDRIS 73

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAF 151
             N  +WN+LI +   S +    A+  F+ M+++ NV P   T    + AC+ L      
Sbjct: 74  ERNQVSWNSLISSLC-SFEKWEMALEAFRCMLDE-NVEPSSFTLVSVVTACSNLPMPEGL 131

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA+  ++G ++  +I N+L+  Y   G L  +  +  +   R LV+WN ++ + 
Sbjct: 132 MMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 190

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  +   AL+  R M +   EPD +T  S+  AC+ L  L  G   HAY L+  + SL 
Sbjct: 191 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK--NGSLD 248

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V ++L+DMYC C  +   R+VF+ M  R +  WN++I G++ +   + AL  F  +
Sbjct: 249 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM 308

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLL 386
                   NS T  GV+ AC   G  S         I+ + +   L+        L+D+ 
Sbjct: 309 EESAGLLANSTTMAGVVPACVRSGAFSRKE-----AIHGFVVKRGLDRDRFVQNTLMDMY 363

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +R G ID A+ +   M  + D V W +++
Sbjct: 364 SRLGKIDIAMRIFGKMEDR-DLVTWNTMI 391



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 125/236 (52%), Gaps = 10/236 (4%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLA 189
           + PD + FP  LKA A L     GKQ HAH++K G  V  V + N+L++ Y  CG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL 248
            KVFD + ER+ VSWN +I +   F +++ AL+ FR M     EP  +T  S+ +AC+ L
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 249 AT---LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
                L +G   HAY LR  +     +  + N+L+ MY K G L  ++ +  S   RDL 
Sbjct: 126 PMPEGLMMGKQVHAYGLRKGE----LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 181

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           +WN+++     + +   AL+Y   +V+ E   P+  T   VL AC+H  M+  G++
Sbjct: 182 TWNTVLSSLCQNEQLLEALEYLREMVL-EGVEPDEFTISSVLPACSHLEMLRTGKE 236



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            +PD Y F ++  A A L  + LG   HA++ +      V  V V N+L+++Y KCG   
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYG--VDSVTVANTLVNLYRKCGDFG 63

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
              +VF+ + +R+  SWNS+I       + E AL+ F R +++E+  P+S T V V++AC
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTLVSVVTAC 122

Query: 351 NHRGM---VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           ++  M   +  G+      + +  +   +     LV +  + G +  +  L+ +   + D
Sbjct: 123 SNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGGR-D 179

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
            V W ++L + C+    +   E + + V+E 
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEG 210


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 344/579 (59%), Gaps = 23/579 (3%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNSFTWN 102
           MSQ  Q+HAQ +++   Q  +    +S++  FA+     DL+YA  +     + NS+ +N
Sbjct: 1   MSQALQLHAQFIKS---QNQRN---FSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYN 54

Query: 103 TLIRACARSVDAKP--QAIVLFQRMIE-QGNV-LPDKHTFPFALKACAYLFAFSQGKQAH 158
           T+IRA + + +     QA+ LF  M++   NV  PD  T+ FALK+C  L    Q KQ H
Sbjct: 55  TIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLH 114

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
             I K G   D+YI N+LIH Y+  G L +A +VFD M  R +VSW  MI  FV      
Sbjct: 115 GFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTV 174

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            A++LF+RM ++  + +  T  S+   CA    LS+G   H  +    +  +     V  
Sbjct: 175 EAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVK---EKGIDFKANVCT 231

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE-SF 336
           +LI MY KCG L+ AR+VF+ +  RD+  W ++I G A HG  + A++ F  L +E  + 
Sbjct: 232 ALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELF--LEMETCNV 289

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+  T + VLSA  + G+V EG  +F+ +   Y++ P ++H+GC+VDLLA+ G ++EA 
Sbjct: 290 KPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAE 349

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV-IESEGGICSGVYVLLSRVYA 455
             ++ MPMKPDAVIWR+L+ AC K HA    +E + K + ++      SG Y+L S VYA
Sbjct: 350 DFINAMPMKPDAVIWRTLIWAC-KVHADTERAERLMKHLELQGMSAHDSGSYILASNVYA 408

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           S  +W D   VR+LM  KG+ K PG S IE+DG+ HEF  GD  HP T++I+  LD + +
Sbjct: 409 STGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVD 468

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           KL+  GY P  S+  M++  D+ K   L  HSE+LA+A G++   PG  IR+ KNLR C+
Sbjct: 469 KLRKEGYNPKVSEV-MLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCE 527

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCHE  KLIS+++  +IIVRDR RFHHFK+G CSC DYW
Sbjct: 528 DCHEFMKLISKVYQRDIIVRDRIRFHHFKNGDCSCKDYW 566


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/652 (35%), Positives = 345/652 (52%), Gaps = 50/652 (7%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           M+ A      P+P +  H          + +  ++LL+    C S  +  ++HA A+R  
Sbjct: 1   MSTAAAAAVLPSPSSTRHPSGGVQHGVLTADRAAALLAG---CASARRASELHAAAVRAG 57

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
           + Q         R   +A+   LD A  +  +  +P +  + + I A + S      A+ 
Sbjct: 58  VDQDKAVDFRLQRA--YAASGRLDLAVALLRRTPDPTAVFYTSAIHAHS-SRGLHHAALA 114

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           L   M+    +LP  HT   +L AC  L   + G+  H +  K  L  + Y+  +L+  Y
Sbjct: 115 LLSEMLLSHGLLPTAHTLSASLPACGGL---AVGRALHGYAVKLALSGEPYVATALLGMY 171

Query: 181 --------------------------------ASCGHLDLANKVFDNMLERSLVSWNVMI 208
                                           A  G LD A  +FD +  + L+ WN M+
Sbjct: 172 ARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMM 231

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           D + Q G    AL+LFRRM +   EPD  +     SA A L T   G W H+++      
Sbjct: 232 DGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSR 291

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALK 325
            +  +  V  +LIDMY KCGSL+ A  VF  +    RD+ +WN+++ G+A+HG +  AL 
Sbjct: 292 RVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALA 351

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F +L  +    P  ITF+GVL+AC+H G+V EGR+ F  M  EY I P +EHYGC+VDL
Sbjct: 352 AFGQLRAQ-GLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDL 410

Query: 386 LARAGNIDEALHLVSNMP-MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           L RAG ++EA  LV +M   KPDAV+W SLL A C+ H ++ L + +A  ++ + G   S
Sbjct: 411 LGRAGRVEEAFELVQSMTRTKPDAVMWASLL-AACRLHKNMELGQRIADHLV-ANGLANS 468

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YVLLS +YA+A  W +VG VR +M   G+ KEPGCS++E+     EF AGD SHP+  
Sbjct: 469 GTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAA 528

Query: 505 QIYGFLDLIDEKLKSRGYTP--DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           +IY  L+ ++   ++RG+ P  +     + D+    K+ +L +HSE+LA+A G+++  PG
Sbjct: 529 EIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPG 588

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             I++ KNLR C DCH V KL+S +   +I+ RDR RFHHF DGSC+C DYW
Sbjct: 589 TAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 351/594 (59%), Gaps = 22/594 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L + +  + +   K++HA AL+     ++ + +  + +  + +   +    RVF  +
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDEN-SFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            +     WN +I   +++   K +A++LF  M E   +L +  T    + AC    AFS+
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDK-EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            +  H  + KRGL  D ++ N+L+  Y+  G +D+A ++F  M +R LV+WN MI  +V 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 214 FGEFDSALKLFRRMQIL------------FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
               + AL L  +MQ L             +P+  T  +I  +CA L+ L+ G   HAY 
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +++   +L TDV V ++L+DMY KCG L ++R+VF+ +P++++ +WN II+ + +HG  +
Sbjct: 544 IKN---NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+    R+++ +   PN +TF+ V +AC+H GMV EG   F VM  +Y + P  +HY C
Sbjct: 601 EAIDLL-RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           +VDLL RAG I EA  L++ MP   + A  W SLL A  + H ++ + E  A+ +I+ E 
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGAS-RIHNNLEIGEIAAQNLIQLEP 718

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
            + S  YVLL+ +Y+SA  W+    VR+ M ++GV KEPGCS IE     H+F AGD+SH
Sbjct: 719 NVASH-YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSH 777

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           PQ++++ G+L+ + E+++  GY PD S   + +  +D K+  L  HSE+LAIA GILN  
Sbjct: 778 PQSEKLSGYLETLWERMRKEGYVPDTS-CVLHNVEEDEKEILLCGHSEKLAIAFGILNTS 836

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PG  IRV KNLRVC DCH  TK IS+I + EII+RD  RFH FK+G+CSC DYW
Sbjct: 837 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 184/389 (47%), Gaps = 20/389 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LL ++ + + M   KQIHA   +        T+   + +  +    D    ++VF +I 
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTV-ANTLVNLYRKCGDFGAVYKVFDRIS 160

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAF 151
             N  +WN+LI +   S +    A+  F+ M+++ NV P   T    + AC+ L      
Sbjct: 161 ERNQVSWNSLISSLC-SFEKWEMALEAFRCMLDE-NVEPSSFTLVSVVTACSNLPMPEGL 218

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA+  ++G ++  +I N+L+  Y   G L  +  +  +   R LV+WN ++ + 
Sbjct: 219 MMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  +   AL+  R M +   EPD +T  S+  AC+ L  L  G   HAY L+  + SL 
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK--NGSLD 335

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V ++L+DMYC C  +   R+VF+ M  R +  WN++I G++ +   + AL  F  +
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM 395

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLL 386
                   NS T  GV+ AC   G  S         I+ + +   L+        L+D+ 
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKE-----AIHGFVVKRGLDRDRFVQNTLMDMY 450

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +R G ID A+ +   M  + D V W +++
Sbjct: 451 SRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 141/266 (53%), Gaps = 12/266 (4%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           W  L+R+  RS +   +A++ +  MI  G + PD + FP  LKA A L     GKQ HAH
Sbjct: 65  WIDLLRSKVRS-NLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAH 122

Query: 161 IFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           ++K G  V  V + N+L++ Y  CG      KVFD + ER+ VSWN +I +   F +++ 
Sbjct: 123 VYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLAT---LSLGMWAHAYILRHCDHSLVTDVLV 275
           AL+ FR M     EP  +T  S+ +AC+ L     L +G   HAY LR  +     +  +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE----LNSFI 238

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            N+L+ MY K G L  ++ +  S   RDL +WN+++     + +   AL+Y   +V+ E 
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL-EG 297

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRD 361
             P+  T   VL AC+H  M+  G++
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKE 323



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           RS   W  ++ + V+      A+  +  M +L  +PD Y F ++  A A L  + LG   
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HA++ +      V  V V N+L+++Y KCG      +VF+ + +R+  SWNS+I      
Sbjct: 120 HAHVYKFGYG--VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM---VSEGRDYFDVMINEYNITP 374
            + E AL+ F R +++E+  P+S T V V++AC++  M   +  G+      + +  +  
Sbjct: 178 EKWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS 236

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +     LV +  + G +  +  L+ +   + D V W ++L + C+    +   E + + 
Sbjct: 237 FI--INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREM 293

Query: 435 VIE 437
           V+E
Sbjct: 294 VLE 296


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 351/594 (59%), Gaps = 22/594 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L + +  + +   K++HA AL+     ++ + +  + +  + +   +    RVF  +
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDEN-SFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            +     WN +I   +++   K +A++LF  M E   +L +  T    + AC    AFS+
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDK-EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            +  H  + KRGL  D ++ N+L+  Y+  G +D+A ++F  M +R LV+WN MI  +V 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 214 FGEFDSALKLFRRMQIL------------FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
               + AL L  +MQ L             +P+  T  +I  +CA L+ L+ G   HAY 
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +++   +L TDV V ++L+DMY KCG L ++R+VF+ +P++++ +WN II+ + +HG  +
Sbjct: 544 IKN---NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+    R+++ +   PN +TF+ V +AC+H GMV EG   F VM  +Y + P  +HY C
Sbjct: 601 EAIDLL-RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           +VDLL RAG I EA  L++ MP   + A  W SLL A  + H ++ + E  A+ +I+ E 
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGAS-RIHNNLEIGEIAAQNLIQLEP 718

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
            + S  YVLL+ +Y+SA  W+    VR+ M ++GV KEPGCS IE     H+F AGD+SH
Sbjct: 719 NVASH-YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSH 777

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           PQ++++ G+L+ + E+++  GY PD S   + +  +D K+  L  HSE+LAIA GILN  
Sbjct: 778 PQSEKLSGYLETLWERMRKEGYVPDTS-CVLHNVEEDEKEILLCGHSEKLAIAFGILNTS 836

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PG  IRV KNLRVC DCH  TK IS+I + EII+RD  RFH FK+G+CSC DYW
Sbjct: 837 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 184/389 (47%), Gaps = 20/389 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LL ++ + + M   KQIHA   +        T+   + +  +    D    ++VF +I 
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTV-ANTLVNLYRKCGDFGAVYKVFDRIS 160

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAF 151
             N  +WN+LI +   S +    A+  F+ M+++ NV P   T    + AC+ L      
Sbjct: 161 ERNQVSWNSLISSLC-SFEKWEMALEAFRCMLDE-NVEPSSFTLVSVVTACSNLPMPEGL 218

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA+  ++G ++  +I N+L+  Y   G L  +  +  +   R LV+WN ++ + 
Sbjct: 219 MMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  +   AL+  R M +   EPD +T  S+  AC+ L  L  G   HAY L+  + SL 
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK--NGSLD 335

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V ++L+DMYC C  +   R+VF+ M  R +  WN++I G++ +   + AL  F  +
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM 395

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLL 386
                   NS T  GV+ AC   G  S         I+ + +   L+        L+D+ 
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKE-----AIHGFVVKRGLDRDRFVQNTLMDMY 450

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +R G ID A+ +   M  + D V W +++
Sbjct: 451 SRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 141/266 (53%), Gaps = 12/266 (4%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           W  L+R+  RS +   +A++ +  MI  G + PD + FP  LKA A L     GKQ HAH
Sbjct: 65  WIDLLRSKVRS-NLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAH 122

Query: 161 IFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           ++K G  V  V + N+L++ Y  CG      KVFD + ER+ VSWN +I +   F +++ 
Sbjct: 123 VYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLAT---LSLGMWAHAYILRHCDHSLVTDVLV 275
           AL+ FR M     EP  +T  S+ +AC+ L     L +G   HAY LR  +     +  +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE----LNSFI 238

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            N+L+ MY K G L  ++ +  S   RDL +WN+++     + +   AL+Y   +V+ E 
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL-EG 297

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRD 361
             P+  T   VL AC+H  M+  G++
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKE 323



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           RS   W  ++ + V+      A+  +  M +L  +PD Y F ++  A A L  + LG   
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HA++ +      V  V V N+L+++Y KCG      +VF+ + +R+  SWNS+I      
Sbjct: 120 HAHVYKFGYG--VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM---VSEGRDYFDVMINEYNITP 374
            + E AL+ F R +++E+  P+S T V V++AC++  M   +  G+      + +  +  
Sbjct: 178 EKWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS 236

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +     LV +  + G +  +  L+ +   + D V W ++L + C+    +   E + + 
Sbjct: 237 FI--INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREM 293

Query: 435 VIE 437
           V+E
Sbjct: 294 VLE 296


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/603 (37%), Positives = 345/603 (57%), Gaps = 50/603 (8%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           P PQ+ + +  ++ + + S      LL +     S  +L+Q+HAQ ++T  P    ++L 
Sbjct: 9   PIPQSPNRNQIHHVKPQSSETLKIDLLRNFN---SPFELRQVHAQIIKTNAPL---SILP 62

Query: 71  YSRIIHFASFA-DLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            +R+    +F     YA ++F  +E   P +F WN+ ++A A   D+   AI+LF R+  
Sbjct: 63  LTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEG-DSPIDAIMLFYRL-R 120

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           Q +V PD  T    L+AC  L   S G+  H  + K G  S++Y+ N ++H YASCG + 
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------- 227
            A  +F+ M +R +V+WN+MI   ++ G+ + A  LF RM                    
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 228 ------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
                       +   + +  T  ++ +ACA L  L LGM  H Y  RH       +V +
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH---GFKRNVRI 297

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           +N+LIDMY KCG L+ A +VFE M +R + SW+++I G A+HGRAE AL+ F  +  +  
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMS-QVG 356

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PN +TF+G+L AC+H G++SEGR +F  M  +Y I P +EHYGC+VDLL+RAG + EA
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
              + NMPMKP+ V+W +LL A C+ H +V ++EE  K ++E +  +  G YV+LS +YA
Sbjct: 417 HEFILNMPMKPNGVVWGALLGA-CRVHKNVEMAEEAIKHLLELD-PLNDGYYVVLSNIYA 474

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
            A RW D   VRK M D+ V K PG SSI +DG+ HEF AG+ SHP T+QI+   + + E
Sbjct: 475 EAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLE 534

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           +++ +GY P+ S   ++D  +  K   +  HSE+LA+  G++N     PIR+ KNLR+C+
Sbjct: 535 EMRLKGYVPNTS-VVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICE 593

Query: 576 DCH 578
           DCH
Sbjct: 594 DCH 596


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/613 (36%), Positives = 354/613 (57%), Gaps = 45/613 (7%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           L+ +  E  S+S  + +H  A+++A+      + + + +IH + S  DLD A +VF  I+
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSD---VFVANSLIHCYFSCGDLDSACKVFTTIK 195

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WN++I    +   +  +A+ LF++M E  +V     T    L ACA +     G
Sbjct: 196 EKDVVSWNSMINGFVQK-GSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRDLEFG 253

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-------------- 200
           ++  ++I +  +  ++ + N+++  Y  CG ++ A ++FD M E+               
Sbjct: 254 RRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 313

Query: 201 -----------------LVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSI 241
                            +V+WN +I A+ Q G+ + AL +F  +Q+    + +  T  S 
Sbjct: 314 EDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVST 373

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA +  L LG W H+YI ++    +  +  V ++LI MY KCG L+ AR+VF S+ K
Sbjct: 374 LSACAQVGALELGRWIHSYIKKN---GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEK 430

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD+  W+++I G A+HG    A+  F ++  E +  PN +TF  V  AC+H G+V E   
Sbjct: 431 RDVFVWSAMIGGLAMHGCGSEAVDMFYKMQ-EANVKPNGVTFTNVFCACSHTGLVDEAES 489

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            F  M + Y I P  +HY C+VD+L R+G +++A+  +  MP+ P   +W +LL AC K 
Sbjct: 490 LFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC-KI 548

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           HA++ L+E    +++E E     G +VLLS +YA + +W++V  +RK M   G+ KEPGC
Sbjct: 549 HANLSLAEMACTRLLELEPR-NDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGC 607

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           SSIEIDG+ HEF +GD +HP ++++YG L  + EKLKS GY P+ S    + E ++ K+ 
Sbjct: 608 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQ 667

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           SL LHSE+LAI  G+++ +    IRV KNLR+C DCH V KLIS+++N EIIVRDR RFH
Sbjct: 668 SLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFH 727

Query: 602 HFKDGSCSCMDYW 614
           HF++G CSC D+W
Sbjct: 728 HFRNGQCSCNDFW 740



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 141/427 (33%), Positives = 217/427 (50%), Gaps = 39/427 (9%)

Query: 23  NNRNEGSFNNHSS--LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
           +N N+ + NN  S   +S +  C S+ QLKQ HA  +RT +     +      I   +SF
Sbjct: 19  SNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSF 78

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           A L+YA +VF +I  PNSFTWNTLIRA A   D           +  +    P+K+TFPF
Sbjct: 79  ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            +KA A + + S G+  H    K  + SDV++ NSLIH Y SCG LD A KVF  + E+ 
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +VSWN MI+ FVQ G  D AL+LF++M+    +    T   + SACA +  L  G    +
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCS 258

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSL------------------------------ 289
           YI    ++ +  ++ + N+++DMY KCGS+                              
Sbjct: 259 YIE---ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 315

Query: 290 -DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
            + AR+V  +MPK+D+ +WN++I  +  +G+   AL  F  L ++++   N IT V  LS
Sbjct: 316 YEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLS 375

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC   G +  GR +    I +  I         L+ + ++ G++++A   V N   K D 
Sbjct: 376 ACAQVGALELGR-WIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKARE-VFNSVEKRDV 433

Query: 409 VIWRSLL 415
            +W +++
Sbjct: 434 FVWSAMI 440



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 148/318 (46%), Gaps = 17/318 (5%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA 78
           S    NR   +    +++L   T+C S+   K++          ++   +   + +  +A
Sbjct: 258 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM------EEKDNVTWTTMLDGYA 311

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHT 137
              D + A  V   +   +   WN LI A  +  + KP +A+++F  +  Q N+  ++ T
Sbjct: 312 ISEDYEAAREVLNAMPKKDIVAWNALISAYEQ--NGKPNEALLVFHELQLQKNIKLNQIT 369

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
               L ACA + A   G+  H++I K G+  + Y+ ++LIH Y+ CG L+ A +VF+++ 
Sbjct: 370 LVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE 429

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA--GLATLSLG 254
           +R +  W+ MI      G    A+ +F +MQ    +P+G TF ++  AC+  GL   +  
Sbjct: 430 KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 489

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILG 313
           +    +      + +V +      ++D+  + G L+ A +  E+MP    TS W +++  
Sbjct: 490 L----FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 545

Query: 314 FALHGRAEAALKYFDRLV 331
             +H     A     RL+
Sbjct: 546 CKIHANLSLAEMACTRLL 563


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/582 (40%), Positives = 338/582 (58%), Gaps = 23/582 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQ---HKTLLIYSRIIHFASFADLDYAFRVFYQIEN-PNS 98
           C  +  + Q+H+ A+ +        +  LL Y     +    DLD A RVFY +    + 
Sbjct: 151 CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTY-----YGKNGDLDDAKRVFYGMGGIRDE 205

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAFSQGKQA 157
            +WN++I A  +  +   +A+ LFQ M+ +G NV  D  T    L A   L   S G Q 
Sbjct: 206 VSWNSMIVAYGQHQEGS-KALGLFQEMVRRGLNV--DMFTLASVLTAFTCLEDLSGGLQF 262

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGH-LDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
           H  + K G   + ++ + LI  Y+ CG  +    KVF+ + E  LV WN M+  + Q  E
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 217 F-DSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           F + AL+ FR+MQ I + P+  +F  + SAC+ L++ S G   H+  L+    S    + 
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPS--NRIS 380

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V+N+LI MY KCG+L  AR++F+ M + +  S NS+I G+A HG    +L  F + ++E 
Sbjct: 381 VDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLF-QWMLER 439

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             +P SITF+ VLSAC H G V EG +YF++M  ++NI P  EHY C++DLL RAG + E
Sbjct: 440 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 499

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A +L++ MP  P ++ W SLL A C+ H ++ L+ + A QV++ E    +  YV+LS +Y
Sbjct: 500 AENLIARMPFNPGSIGWASLLGA-CRTHGNIELAVKAANQVLQLEPS-NAAPYVVLSNMY 557

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           ASA RW +V  VRK M D+GV K+PGCS IE+    H F A D+SHP  K+IY FL+ + 
Sbjct: 558 ASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMS 617

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRL--HSERLAIALGILNLKPGMPIRVFKNLR 572
            K+K  GY PD   A + D+   G +  +RL  HSE+LA+A G+++ K G P+ V KNLR
Sbjct: 618 GKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLR 677

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +C DCH   K IS I   EI VRD  RFH FK+G CSC DYW
Sbjct: 678 ICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 127/314 (40%), Gaps = 42/314 (13%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK------ 191
           F   LK C      S GK  H+   K  +    Y +N  I  Y+ CG L  A K      
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 192 -------------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
                                    +FD + E  LVS+N +I A+   GE   AL LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M ++  + DG+T  ++ +AC     L +G      +    D    + V VNN+L+  Y K
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGL-IGQLHSVAVSSGFD----SYVSVNNALLTYYGK 185

Query: 286 CGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            G LD A++VF  M   RD  SWNS+I+ +  H     AL  F  + V    + +  T  
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM-VRRGLNVDMFTLA 244

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC-LVDLLARAGNIDEALHLVSNMP 403
            VL+A      +S G  +   +I          H G  L+DL ++ G        V    
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQN--SHVGSGLIDLYSKCGGGMSDCRKVFEEI 302

Query: 404 MKPDAVIWRSLLDA 417
            +PD V+W +++  
Sbjct: 303 TEPDLVLWNTMVSG 316


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/582 (40%), Positives = 338/582 (58%), Gaps = 23/582 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQ---HKTLLIYSRIIHFASFADLDYAFRVFYQIEN-PNS 98
           C  +  + Q+H+ A+ +        +  LL Y     +    DLD A RVFY +    + 
Sbjct: 151 CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTY-----YGKNGDLDDAKRVFYGMGGIRDE 205

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAFSQGKQA 157
            +WN++I A  +  +   +A+ LFQ M+ +G NV  D  T    L A   L   S G Q 
Sbjct: 206 VSWNSMIVAYGQHQEGS-KALGLFQEMVRRGLNV--DMFTLASVLTAFTCLEDLSGGLQF 262

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGH-LDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
           H  + K G   + ++ + LI  Y+ CG  +    KVF+ + E  LV WN M+  + Q  E
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 217 F-DSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           F + AL+ FR+MQ I + P+  +F  + SAC+ L++ S G   H+  L+    S    + 
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPS--NRIS 380

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V+N+LI MY KCG+L  AR++F+ M + +  S NS+I G+A HG    +L  F + ++E 
Sbjct: 381 VDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLF-QWMLER 439

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             +P SITF+ VLSAC H G V EG +YF++M  ++NI P  EHY C++DLL RAG + E
Sbjct: 440 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 499

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A +L++ MP  P ++ W SLL A C+ H ++ L+ + A QV++ E    +  YV+LS +Y
Sbjct: 500 AENLIARMPFNPGSIGWASLLGA-CRTHGNIELAVKAANQVLQLEPS-NAAPYVVLSNMY 557

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           ASA RW +V  VRK M D+GV K+PGCS IE+    H F A D+SHP  K+IY FL+ + 
Sbjct: 558 ASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMS 617

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRL--HSERLAIALGILNLKPGMPIRVFKNLR 572
            K+K  GY PD   A + D+   G +  +RL  HSE+LA+A G+++ K G P+ V KNLR
Sbjct: 618 GKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLR 677

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +C DCH   K IS I   EI VRD  RFH FK+G CSC DYW
Sbjct: 678 ICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 126/314 (40%), Gaps = 42/314 (13%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK------ 191
           F   LK C      S GK  H+   K  +    Y +N  I  Y+ CG L  A K      
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 192 -------------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
                                    +FD + E  LVS+N +I A+   GE   AL LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M ++  + D +T  ++ +AC     L +G      +    D    + V VNN+L+  Y K
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGL-IGQLHSVAVSSGFD----SYVSVNNALLTYYGK 185

Query: 286 CGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            G LD A++VF  M   RD  SWNS+I+ +  H     AL  F  + V    + +  T  
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM-VRRGLNVDMFTLA 244

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC-LVDLLARAGNIDEALHLVSNMP 403
            VL+A      +S G  +   +I          H G  L+DL ++ G        V    
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQN--SHVGSGLIDLYSKCGGGMSDCRKVFEEI 302

Query: 404 MKPDAVIWRSLLDA 417
            +PD V+W +++  
Sbjct: 303 TEPDLVLWNTMVSG 316


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/528 (41%), Positives = 315/528 (59%), Gaps = 10/528 (1%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF ++   ++ +WNTLI  CA     + +A+ + + M   G  +PD  T    L   A 
Sbjct: 125 KVFDEMLERDAVSWNTLILGCAEHKRHQ-EALSMVREMWRDG-FMPDTFTLSTVLPIFAE 182

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                +G   H +  K G  +DV++ +SLI  YA+C  +D + KVFD+  +   V WN M
Sbjct: 183 CADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSM 242

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +  + Q G  + AL +FRRM Q    P   TF S+  A   L+ L LG   HAY++R   
Sbjct: 243 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA-- 300

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                ++ +++SLIDMYCKCG++DIAR+VF  +   D+ SW ++I+G+ALHG    A   
Sbjct: 301 -RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVL 359

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+R+ +  +  PN ITF+ VL+AC+H G+V  G  YF+ M N+Y   P LEH   L D L
Sbjct: 360 FERMELG-NVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTL 418

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG++DEA + +S M +KP + +W +LL AC + H + VL+EEVAK++ E E     G 
Sbjct: 419 GRAGDLDEAYNFISEMKIKPTSSVWSTLLRAC-RVHKNTVLAEEVAKKIFELEPK-SMGS 476

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           +V+LS +Y+++ RWN+   +RK M  KG+ KEP CS IE+    H F A D SHP   +I
Sbjct: 477 HVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRI 536

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              L++  E++  +GY P+  +  + D  ++ K+  L  HSE+LAI  GI++  PG  IR
Sbjct: 537 IDALNVYSEQMIRQGYVPNM-EDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIR 595

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCH  TK IS+I   EI+VRD  RFH FKDG+CSC D+W
Sbjct: 596 VMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 154/341 (45%), Gaps = 35/341 (10%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH---TFPFALKACAYLFAFSQGKQ 156
           +W   IR  A S      AI LF +M  + +V P      + P ALK+CA L   +    
Sbjct: 14  SWAYQIRMAA-SQGQFLHAISLFLQM--RASVAPRSSVPASLPAALKSCAGLGLCTLAAS 70

Query: 157 AHAHIFKRGLVSDVYINNSLI----------HFYASCG----------HLDLANKVFDNM 196
            HA   + G  +D +  N+L+          H + + G            +   KVFD M
Sbjct: 71  LHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEM 130

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
           LER  VSWN +I    +      AL + R M +  F PD +T  ++    A  A +  GM
Sbjct: 131 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 190

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y ++   +    DV V +SLIDMY  C  +D + +VF+S    D   WNS++ G+A
Sbjct: 191 VVHGYAIK---NGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYA 247

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITP 374
            +G  E AL  F R+ ++    P  +TF  ++ A  +  ++  G+     +I   +N   
Sbjct: 248 QNGSVEEALGIFRRM-LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNI 306

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +     L+D+  + GN+D A   V N    PD V W +++
Sbjct: 307 FIS--SSLIDMYCKCGNVDIA-RRVFNGIQSPDIVSWTAMI 344



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S++L    EC  + +   +H  A++      +   +  S I  +A+   +DY+ +VF   
Sbjct: 174 STVLPIFAECADIKRGMVVHGYAIKNGF--DNDVFVGSSLIDMYANCTQMDYSMKVFDSF 231

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + ++  WN+++   A++   + +A+ +F+RM++ G V P   TF   + A   L     
Sbjct: 232 SDCDAVLWNSMLAGYAQNGSVE-EALGIFRRMLQAG-VRPVPVTFSSLIPAFGNLSLLRL 289

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GKQ HA++ +     +++I++SLI  Y  CG++D+A +VF+ +    +VSW  MI  +  
Sbjct: 290 GKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYAL 349

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    A  LF RM++   +P+  TF ++ +AC+    +  G W +   + +  +  V  
Sbjct: 350 HGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNG-WKYFNSMSN-QYGFVPS 407

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRA----EAALKYF 327
           +    +L D   + G LD A      M  +  +S W++++    +H       E A K F
Sbjct: 408 LEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIF 467

Query: 328 D 328
           +
Sbjct: 468 E 468


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 352/614 (57%), Gaps = 35/614 (5%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           EG   +  +  S L  C  +  L   K+IHA ALRT    ++ + +  + +  + +   +
Sbjct: 210 EGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIEN-SFVGSALVDMYCNCGQV 268

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           +    VF  + +     WN +I   A+S +   +A++LF  M     +  +  T    + 
Sbjct: 269 ESGRLVFDSVLDRKIGLWNAMIAGYAQS-EHDEKALMLFIEMEAAAGLYSNATTMSSIVP 327

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A       S+ +  H ++ KRGL ++ Y+ N+LI  Y+  G +  + ++FD+M +R +VS
Sbjct: 328 AYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVS 387

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQ-----------------ILFEPDGYTFQSITSACA 246
           WN +I ++V  G    AL L   MQ                 + F+P+  T  ++   CA
Sbjct: 388 WNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCA 447

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L+ L+ G   HAY +R+    L + V V ++L+DMY KCG L++AR+VF+ MP R++ +
Sbjct: 448 SLSALAKGKEIHAYAIRNL---LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVIT 504

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEES----FSPNSITFVGVLSACNHRGMVSEGRDY 362
           WN II+ + +HG+ + +L+ F+ +V E +      P  +TF+ + ++C+H GMV EG   
Sbjct: 505 WNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSL 564

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKK 421
           F  M NE+ I P  +HY C+VDL+ RAG ++EA  LV+ MP   D V  W SLL AC   
Sbjct: 565 FHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIY 624

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H ++ + E  A+ +++ +  + S  YVLLS +Y+SA  W+    +R+ M   GV KEPGC
Sbjct: 625 H-NIEIGEIAAENLLQLQPDVASH-YVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGC 682

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQ 540
           S IE     H+F AGD SHPQ+++++ FL+ + E+LK  GY PD   A ++ ++D+  K+
Sbjct: 683 SWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPD--TACVLHDIDEEEKE 740

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
           + L  HSE+LAIA GILN  PG  IRV KNLRVC DCH  +K IS+I + EII+RD  RF
Sbjct: 741 TILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRF 800

Query: 601 HHFKDGSCSCMDYW 614
           HHFKDG+CSC DYW
Sbjct: 801 HHFKDGTCSCGDYW 814



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 146/286 (51%), Gaps = 6/286 (2%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL--VSDVYINNSLIHFYASCGHLDLAN 190
           PD   FP  LKA A +     GKQ HAH+FK G    S V I+N+L++ Y  CG L  A 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLA 249
           KVFD + ER  VSWN +I A  +F E++ A+K FR M +  FEP  +T  S+  AC+ L 
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
               G+W    I   C          NN+L+ MY K G LD A+ +      RDL +WNS
Sbjct: 128 KRD-GLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I  F+ + R   AL +  RL+V E   P+ +TF  VL AC+H  ++  G++     +  
Sbjct: 187 MISSFSQNERFMEALMFL-RLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRT 245

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            ++         LVD+    G + E+  LV +  +     +W +++
Sbjct: 246 DDVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMI 290



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 215/459 (46%), Gaps = 45/459 (9%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           KQIH    R       +T    + +  +A    LD A  +    E+ +  TWN++I + +
Sbjct: 136 KQIHGCCFRKG---HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFS 192

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-GLVS 168
           ++ +   +A++  + M+ +G V PD  TF   L AC++L     GK+ HA+  +   ++ 
Sbjct: 193 QN-ERFMEALMFLRLMVLEG-VKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIE 250

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           + ++ ++L+  Y +CG ++    VFD++L+R +  WN MI  + Q    + AL LF  M+
Sbjct: 251 NSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEME 310

Query: 229 IL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                  +  T  SI  A      +S     H Y+++     L T+  + N+LIDMY + 
Sbjct: 311 AAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIK---RGLETNRYLQNALIDMYSRM 367

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV-VEES---------- 335
           G +  ++++F+SM  RD+ SWN+II  + + GR+  AL     +  +EE           
Sbjct: 368 GDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDE 427

Query: 336 ----FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLA 387
               F PNSIT + VL  C     +++G++     I+ Y I  +L         LVD+ A
Sbjct: 428 KQVPFKPNSITLMTVLPGCASLSALAKGKE-----IHAYAIRNLLASQVTVGSALVDMYA 482

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDAC---CKKHASVVLSEEVAKQVIESEGGICS 444
           + G ++ A  +   MP++ + + W  ++ A     K   S+ L E++  +   ++GG   
Sbjct: 483 KCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKGKESLELFEDMVAE--GAKGGEVK 539

Query: 445 GVYVLLSRVYASARRWNDV----GLVRKLMTDKGVTKEP 479
              V    ++AS      V     L  K+  + G+   P
Sbjct: 540 PTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAP 578



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 192/411 (46%), Gaps = 24/411 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           ++L ++   + +   KQIHA   +          +  + +  +     L  A++VF +I 
Sbjct: 15  AVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRIT 74

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF---AF 151
             +  +WN++I A  R  +    AI  F+ M+ +G   P   T      AC+ L      
Sbjct: 75  ERDQVSWNSIISALCR-FEEWEVAIKAFRLMLMEG-FEPSSFTLVSMALACSNLRKRDGL 132

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ H   F++G     + NN+L+  YA  G LD A  +     +R LV+WN MI +F
Sbjct: 133 WLGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSF 191

Query: 212 VQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
            Q   F  AL +F R+ +L   +PDG TF S+  AC+ L  L  G   HAY LR  D  +
Sbjct: 192 SQNERFMEAL-MFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDD--V 248

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           + +  V ++L+DMYC CG ++  R VF+S+  R +  WN++I G+A     E AL  F  
Sbjct: 249 IENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIE 308

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDL 385
           +        N+ T   ++ A      +S         I+ Y I   LE        L+D+
Sbjct: 309 MEAAAGLYSNATTMSSIVPAYVRCEGISRKEG-----IHGYVIKRGLETNRYLQNALIDM 363

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDA---CCKKHASVVLSEEVAK 433
            +R G+I  +  +  +M  + D V W +++ +   C +   +++L  E+ +
Sbjct: 364 YSRMGDIKTSKRIFDSMEDR-DIVSWNTIITSYVICGRSSDALLLLHEMQR 413



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
           F PD + F ++  A AG+  L LG   HA++ +   +   + V ++N+L++MY KCG L 
Sbjct: 6   FSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKF-GYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            A +VF+ + +RD  SWNSII         E A+K F RL++ E F P+S T V +  AC
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAF-RLMLMEGFEPSSFTLVSMALAC 123

Query: 351 NH 352
           ++
Sbjct: 124 SN 125


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 349/591 (59%), Gaps = 18/591 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYA 86
            +N  ++L+ L  C S+ +L++IHA  + + L   H  + I +++++F + +    L YA
Sbjct: 1   MSNEKAILALLQGCNSLKRLRKIHAHVIVSGL---HHHVPIANKLLNFCAISVSGSLAYA 57

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
             +F+Q+E P +  WN++IR  A+S  +   AIV + +M+     +PD  TF F LKAC 
Sbjct: 58  QLLFHQMECPQTEAWNSIIRGFAQS-SSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACE 116

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            + A  + K+ H  + + G  +DV +  +L+  Y++ G + +A +VFD M  R LV+WN 
Sbjct: 117 RIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNA 176

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  F Q G    AL+ + +M+    + DG+T   + S+CA L  L++G+  H +     
Sbjct: 177 MISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFAR--- 233

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           ++ L   + V N+LIDMY KCGSLD A  +F+ M ++D+ +WNS+I+G+ +HGR   A+ 
Sbjct: 234 ENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIY 293

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F +++ E    PN +TF+G+L  C+H+G+V EG  YF++M +++ + P ++HYGCLVDL
Sbjct: 294 CFQQML-EARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDL 352

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
             RAG +D+AL +VSN     D+V+WR LL +C K H +V + E +A   +   G   +G
Sbjct: 353 YGRAGKLDKALEIVSNSS-HNDSVLWRILLGSC-KIHKNVTIGE-IAMNRLSELGATSAG 409

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
             +LL+ +YA  +    V  +RK++  +G    PG S IEI    H+F   D SH  + +
Sbjct: 410 DCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVE 469

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAA--MVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           +Y  L  +  +    GY  D S ++  M+  ++  K +S   HSE+LAIA G+     G 
Sbjct: 470 VYEKLREVIHQASFFGYVGDESISSLDMLSTMETLK-TSCTYHSEKLAIAFGLARTADGT 528

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLRVC+DCH   K +S  FN EIIVRDR RFHHFK G CSC DYW
Sbjct: 529 QIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 339/593 (57%), Gaps = 19/593 (3%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFAD 82
           +G   N  +  + LT C S+      +Q+H   +++        + + S ++  +A   D
Sbjct: 259 QGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSN---VYVQSALVDMYAKCGD 315

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L  A  +   +E+ +  +WN+L+    R    + +A+ LF+ M  + N+  D +TFP  L
Sbjct: 316 LKNAKNMLETMEDDDVVSWNSLMVGFVRH-GLEEEALRLFKNMHGR-NMKIDDYTFPSVL 373

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
             C  +      K  H  I K G  +   ++N+L+  YA  G +D A  VF+ MLE+ ++
Sbjct: 374 NCC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVI 431

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  ++  + Q    + +LK+F  M++    PD +   SI SACA L  L  G   H   
Sbjct: 432 SWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDF 491

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++     L     V NSL+ MY KCG LD A  +F SM  +D+ +W +II+G+A +G+  
Sbjct: 492 IKS---GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGR 548

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            +LK++D +V   +  P+ ITF+G+L AC+H G+V EGR YF  M   Y I P  EHY C
Sbjct: 549 NSLKFYDAMVSSGT-RPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYAC 607

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           ++DL  R+G +DEA  L+  M +KPDA +W+SLL AC + H ++ L+E  A  + E E  
Sbjct: 608 MIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSAC-RVHENLELAERAATNLFELEP- 665

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
           + +  YV+LS +Y+++R+WNDV  +RKLM  KG+ KEPGCS +EI+   + F + D  HP
Sbjct: 666 MNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHP 725

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           +  +IY  +D I  ++K  GY PD S  ++ D   +GK+  L  HSE+LA+A G+L   P
Sbjct: 726 REAEIYTKIDEIILRIKEAGYVPDMS-FSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPP 784

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIR+FKNLRVC DCH   K ISR+F   II+RD   FHHF++G CSC DYW
Sbjct: 785 SAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 204/409 (49%), Gaps = 20/409 (4%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLI 70
           +  +  +F + R EG   +  +L S L  C S+  ++    IH   ++     +    ++
Sbjct: 143 KVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGF--EGNVFVV 200

Query: 71  YSRIIHFASFADLDYAFRVFYQIE--NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
              +  +A    +  A  +F  +E    N   W  ++   A++ D   +A+  F+ M  Q
Sbjct: 201 TGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGY-KAVEFFRYMHAQ 259

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G V  +++TFP  L AC+ + A   G+Q H  I K G  S+VY+ ++L+  YA CG L  
Sbjct: 260 G-VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKN 318

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A  + + M +  +VSWN ++  FV+ G  + AL+LF+ M     + D YTF S+ + C  
Sbjct: 319 AKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV- 377

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           + +++     H  I++          LV+N+L+DMY K G +D A  VFE M ++D+ SW
Sbjct: 378 VGSINPKS-VHGLIIK---TGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISW 433

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVM 366
            S++ G+A +   E +LK F  + V    +P+      +LSAC    ++  G+  + D +
Sbjct: 434 TSLVTGYAQNNSHEESLKIFCDMRV-TGVNPDQFIVASILSACAELTLLEFGKQVHLDFI 492

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +    +  +  Y  LV + A+ G +D+A  +  +M +K D + W +++
Sbjct: 493 KSGLRWSQSV--YNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 40/280 (14%)

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE-------FDS--- 219
           +Y  N L++  +  G ++ A K+FD M ++   SWN MI ++V  G        FD    
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 220 ---------------------ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
                                A  LFR M++  ++   +T  S+   C+ L  +  G   
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFA 315
           H ++++   +    +V V   L+DMY KC  +  A  +F+ +   +++   W +++ G+A
Sbjct: 185 HGFVVK---NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G    A+++F R +  +    N  TF  +L+AC+       G      ++     + V
Sbjct: 242 QNGDGYKAVEFF-RYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNV 300

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                 LVD+ A+ G++  A +++  M    D V W SL+
Sbjct: 301 YVQ-SALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLM 338


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/539 (40%), Positives = 318/539 (58%), Gaps = 14/539 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A F  LD A R+F  +   N  TW T++ A A S D + Q  + F   + +  V P+ +
Sbjct: 114 YAKFGLLDDALRMFDGMPVRNVVTWTTVVAALA-SADGRKQEALRFLVAMRRDGVAPNAY 172

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L AC      +     HA   K GL SDV++ +SLI  Y   G LD   +VFD M
Sbjct: 173 TFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM 229

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGM 255
           + R LV WN +I  F Q G+   A++LF RM+   F  +  T  S+  AC G+  L  G 
Sbjct: 230 VTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGR 289

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA++L++       D++++N+L+DMYCKCGSL+ A  +F  MP+RD+ SW++++ G A
Sbjct: 290 QVHAHVLKY-----DRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLA 344

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G++  AL+ FD L+  +  +PN +T VGVL AC+H G+V +G  YF  M   + I P 
Sbjct: 345 QNGKSVEALRVFD-LMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPE 403

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            EH+ C+VDLL RAG +DEA+  +  M ++PD+VIWR+LL A C+ H +  L+   A+++
Sbjct: 404 REHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGA-CRMHKNASLAAYAAREI 462

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           ++ E     G  VLLS  YA  R+W D     K M D+G+ KEPG S IE++   H F A
Sbjct: 463 LKLEPDD-QGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIA 521

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SHP +  I   L+ +  ++KS GY P  ++  + D   + K+  L+ HSE++AI  G
Sbjct: 522 GDLSHPCSDTIIQELNRLIGRIKSLGYVPQ-TEFVLQDLPTEQKEDLLKYHSEKMAIVFG 580

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            ++   G PIR+ KNLR+C DCH   KL+S+     I++RD  RFHHF+DG+CSC DYW
Sbjct: 581 TMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 159/345 (46%), Gaps = 36/345 (10%)

Query: 106 RACARSVDAKPQ---AIVLFQRMIEQGNVL---------------PDKHTFPFALKACAY 147
           R  +R V A+P+   ++  F R+  +G +                 D  +    +K C  
Sbjct: 17  RRSSRRVHAQPRPHPSLTTFSRLCVEGPLPAALALLSELAAAGLRADPVSLTRLVKLCVR 76

Query: 148 LFAFSQGKQAHAHIFKRGLV-----SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
                 G+  H H+   G +       ++++NSL   YA  G LD A ++FD M  R++V
Sbjct: 77  HGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVV 136

Query: 203 SWNVMIDAFVQF-GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           +W  ++ A     G    AL+    M+     P+ YTF S+  AC     L+     HA 
Sbjct: 137 TWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTA---VHAS 193

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
            ++     L +DV V +SLID Y K G LD  R+VF+ M  RDL  WNSII GFA  G  
Sbjct: 194 TVK---AGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDG 250

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             A++ F R+  +  FS N  T   VL AC    M+  GR      + +Y+   +L  + 
Sbjct: 251 VGAIELFMRM-KDAGFSSNQGTLTSVLRACTGMVMLEAGRQVH-AHVLKYDRDLIL--HN 306

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
            L+D+  + G++++A  L   MP + D + W +++    +   SV
Sbjct: 307 ALLDMYCKCGSLEDADALFHRMPQR-DVISWSTMVSGLAQNGKSV 350



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 10/301 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           R +G   N  +  S L  C +   L  +HA  ++  L       +  S I  +    DLD
Sbjct: 163 RRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSD--VFVRSSLIDAYVKLGDLD 220

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
              RVF ++   +   WN++I   A+S D    AI LF RM + G    ++ T    L+A
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGV-GAIELFMRMKDAG-FSSNQGTLTSVLRA 278

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C  +     G+Q HAH+ K     D+ ++N+L+  Y  CG L+ A+ +F  M +R ++SW
Sbjct: 279 CTGMVMLEAGRQVHAHVLKYD--RDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISW 336

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           + M+    Q G+   AL++F  M+     P+  T   +  AC+    +  G W +   ++
Sbjct: 337 STMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDG-WHYFRSMK 395

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEA 322
                +  +   +N ++D+  + G LD A +    M  + D   W +++    +H  A  
Sbjct: 396 RL-FGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASL 454

Query: 323 A 323
           A
Sbjct: 455 A 455


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 319/544 (58%), Gaps = 10/544 (1%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           +R +   S    D   ++F  +   +  +WNT+I   AR  +   +  +   R +   N+
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNAR--NGLYEETLRMIREMGGANL 235

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD  T    L   A     S+GK+ H    ++GL +D+Y+ +SLI  YA C  +  + +
Sbjct: 236 KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR 295

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           VF  + ER  +SWN +I   VQ G FD  L+ FR+M +   +P  Y+F SI  ACA L T
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H YI R+       ++ + +SL+DMY KCG++  A+Q+F+ M  RD+ SW ++
Sbjct: 356 LHLGKQLHGYITRN---GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAM 412

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G ALHG+A  A++ F+++  E    PN + F+ VL+AC+H G+V E   YF+ M  ++
Sbjct: 413 IMGCALHGQAPDAIELFEQMETE-GIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDF 471

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I P +EHY  + DLL RAG ++EA   +  M + P   IW +LL AC + H ++ ++E+
Sbjct: 472 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSAC-RVHXNIDMAEK 530

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
           VA +++E +    +G Y+LL+ +Y++ARRW +    R  M   G+ K P CS IE+    
Sbjct: 531 VANRILEVDPN-NTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKV 589

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           + F AGD SHP  ++I   ++++ E ++  GY PD S+    D  ++ K+  +  HSERL
Sbjct: 590 YAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHH-DVEEEQKKYLVCSHSERL 648

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AI  GI+N   GM IRV KNLRVC DCH  TK IS+I   EI+VRD +RFHHFK+G+CSC
Sbjct: 649 AIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSC 708

Query: 611 MDYW 614
            DYW
Sbjct: 709 GDYW 712



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 205/442 (46%), Gaps = 52/442 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALR---TALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +LL +    KS SQ +Q+HAQ L+   ++L      L IYS I        L  + R+F 
Sbjct: 11  ALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHI------NLLHDSLRLFN 64

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            I  P +  W ++IR C  S     Q++  F  M+  G + PD + FP  LK+CA L   
Sbjct: 65  TIHFPPALAWKSVIR-CYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSVLKSCALLMDL 122

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL-------ANKVFDNMLERS---- 200
           + G+  H +I + GL  D+Y  N+L++ Y+    L+        A +VFD M ER+    
Sbjct: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182

Query: 201 ---------------------LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
                                LVSWN +I    + G ++  L++ R M     +PD +T 
Sbjct: 183 TVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTL 242

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+    A    +S G   H   +R     L  D+ V +SLIDMY KC  +  + +VF  
Sbjct: 243 SSVLPLIAENVDISRGKEIHGCSIR---QGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           + +RD  SWNSII G   +G  +  L++F ++++ +   P S +F  ++ AC H   +  
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHL 358

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G+      I        +     LVD+ A+ GNI  A  +   M ++ D V W +++  C
Sbjct: 359 GKQLHGY-ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGC 416

Query: 419 CKKHASVVLSEEVAKQVIESEG 440
              H     + E+ +Q +E+EG
Sbjct: 417 A-LHGQAPDAIELFEQ-METEG 436


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/550 (40%), Positives = 327/550 (59%), Gaps = 15/550 (2%)

Query: 66  KTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
           KT L    I  +  F  L+ A  +F ++   N  +W T+I A + +     +A+ L   M
Sbjct: 319 KTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYS-NAQLNDRAMRLLAFM 377

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
              G V+P+  TF   L+AC  L+     KQ H+ I K GL SDV++ ++LI  Y+  G 
Sbjct: 378 FRDG-VMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGE 433

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSA 244
           L  A KVF  M+    V WN +I AF Q  + D AL L++ M+ + F  D  T  S+  A
Sbjct: 434 LLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRA 493

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  L+ L LG  AH ++L+        D+++NN+L+DMYCKCGSL+ A+ +F  M K+D+
Sbjct: 494 CTSLSLLELGRQAHVHVLK-----FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDV 548

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            SW+++I G A +G +  AL  F+ + V+    PN IT +GVL AC+H G+V+EG  YF 
Sbjct: 549 ISWSTMIAGLAQNGFSMEALNLFESMKVQGP-KPNHITILGVLFACSHAGLVNEGWYYFR 607

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M N Y I P  EHYGC++DLL RA  +D+ + L+  M  +PD V WR+LLDA C+   +
Sbjct: 608 SMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDA-CRARQN 666

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V L+   AK++++ +    +G YVLLS +YA ++RWNDV  VR+ M  +G+ KEPGCS I
Sbjct: 667 VDLATYAAKEILKLDPQD-TGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWI 725

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           E++   H F  GD SHPQ  +I   L+    +L   GY PD +   + D   + ++ SLR
Sbjct: 726 EVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPD-TNFVLQDLEGEQREDSLR 784

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAI  GI++      IR++KNL++C DCH+  KLI+ +    I++RD  R+HHF+
Sbjct: 785 YHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQ 844

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 845 DGVCSCGDYW 854



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 13/301 (4%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P A+ +   M  +G V  D  T+   +K C    A  +GK+ H HIF  G     ++ N 
Sbjct: 267 PSAMHVLDSMERRG-VWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNI 325

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPD 234
           LI+ Y     L+ A  +FD M ER++VSW  MI A+      D A++L   M +    P+
Sbjct: 326 LINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPN 385

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            +TF S+  AC  L  L      H++I++     L +DV V ++LID+Y K G L  A +
Sbjct: 386 MFTFSSVLRACERLYDLKQ---LHSWIMK---VGLESDVFVRSALIDVYSKMGELLEALK 439

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VF  M   D   WNSII  FA H   + AL  +  +     F  +  T   VL AC    
Sbjct: 440 VFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSM-RRVGFPADQSTLTSVLRACTSLS 498

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           ++  GR    V + +++   +L +   L+D+  + G++++A  + + M  K D + W ++
Sbjct: 499 LLELGRQA-HVHVLKFDQDLILNN--ALLDMYCKCGSLEDAKFIFNRMA-KKDVISWSTM 554

Query: 415 L 415
           +
Sbjct: 555 I 555



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 46/329 (13%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDY 85
           +G   N  +  S L  C+ +  LKQ+H+  ++  L      + + S +I  ++   +L  
Sbjct: 380 DGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESD---VFVRSALIDVYSKMGELLE 436

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +VF ++   +S  WN++I A A+  D   +A+ L++ M   G    D+ T    L+AC
Sbjct: 437 ALKVFREMMTGDSVVWNSIIAAFAQHSDGD-EALHLYKSMRRVG-FPADQSTLTSVLRAC 494

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             L     G+QAH H+ K     D+ +NN+L+  Y  CG L+ A  +F+ M ++ ++SW+
Sbjct: 495 TSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWS 552

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI    Q G    AL LF  M++   +P+  T   +  AC+    ++ G W   Y  R 
Sbjct: 553 TMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEG-W---YYFR- 607

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                        S+ ++Y     +D  R+ +  M                L GRAE  L
Sbjct: 608 -------------SMNNLY----GIDPGREHYGCM--------------LDLLGRAE-KL 635

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHR 353
               +L+ E +  P+ +T+  +L AC  R
Sbjct: 636 DDMVKLIHEMNCEPDVVTWRTLLDACRAR 664


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/619 (37%), Positives = 353/619 (57%), Gaps = 53/619 (8%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFAD----LDYAFR 88
           L+ L  C S S LK IH   LRT L      + + SR++      ++F      L YA+ 
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISD---VFVASRLLALCVDDSTFNKPTNLLGYAYG 72

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F QI+NPN F +N LIR    S  A+P     F   + +  + PD  TFPF +KA + +
Sbjct: 73  IFSQIQNPNLFVFNLLIRCF--STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEM 130

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G+Q H+ I + G  +DVY+ NSL+H YA+CG +  A ++F  M  R +VSW  M+
Sbjct: 131 ECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMV 190

Query: 209 DAFVQFGEFDSALKLFRRM--QILFE----PDGY-------------------------- 236
             + + G  ++A ++F  M  + LF      +GY                          
Sbjct: 191 AGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANET 250

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
              S+ S+CA L  L  G  A+ Y+++     +  ++++  +L+DM+ +CG ++ A  VF
Sbjct: 251 VMVSVISSCAHLGALEFGERAYEYVVKS---HMTVNLILGTALVDMFWRCGDIEKAIHVF 307

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           E +P+ D  SW+SII G A+HG A  A+ YF +++    F P  +TF  VLSAC+H G+V
Sbjct: 308 EGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI-SLGFIPRDVTFTAVLSACSHGGLV 366

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            +G + ++ M  ++ I P LEHYGC+VD+L RAG + EA + +  M +KP+A I  +LL 
Sbjct: 367 EKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLG 426

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           AC K + +  ++E V   +I+ +    SG YVLLS +YA A +W+ +  +R +M +K V 
Sbjct: 427 AC-KIYKNTEVAERVGNMLIKVKPE-HSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484

Query: 477 KEPGCSSIEIDGIAHEFFAGD-TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
           K PG S IEIDG  ++F  GD   HP+  +I    + I  K++  GY  + +  A  D  
Sbjct: 485 KPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGN-TGDAFFDVD 543

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           ++ K+SS+ +HSE+LAIA G++  KPG  IR+ KNLRVC+DCH VTKLIS ++  E+IVR
Sbjct: 544 EEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVR 603

Query: 596 DRARFHHFKDGSCSCMDYW 614
           DR RFHHF++G CSC DYW
Sbjct: 604 DRNRFHHFRNGVCSCRDYW 622


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/462 (44%), Positives = 295/462 (63%), Gaps = 7/462 (1%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+  H+ + + G  S +Y+ NSL+H YA+CG +  A KVFD M E+ LV+WN +I+ F +
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+ + AL L+  M     +PDG+T  S+ SACA +  L+LG   H Y+++     L  +
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV---GLTRN 123

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           +  +N L+D+Y +CG ++ A+ +F+ M  ++  SW S+I+G A++G  + A++ F  +  
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            E   P  ITFVG+L AC+H GMV EG +YF  M  EY I P +EH+GC+VDLLARAG +
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
            +A   + +MPM+P+ VIWR+LL AC   H    L+E    Q+++ E    SG YVLLS 
Sbjct: 244 KKAYEYIKSMPMQPNVVIWRTLLGACT-VHGDSDLAEFARIQILQLEPN-HSGDYVLLSN 301

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YAS +RW+DV  +RK M   GV K PG S +E+    HEF  GD SHPQ+  IY  L  
Sbjct: 302 MYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKE 361

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           +  +L+S GY P  S    VD  ++ K++++  HSE++AIA  +++     PI V KNLR
Sbjct: 362 MTGRLRSEGYVPQISN-VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 420

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   KL+S+++N EI+VRDR+RFHHFK+GSCSC DYW
Sbjct: 421 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 140/280 (50%), Gaps = 15/280 (5%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           + IH+  +R+        + + + ++H +A+  D+  A++VF ++   +   WN++I   
Sbjct: 8   ETIHSVVIRSGFGS---LIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 64

Query: 109 ARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
           A   + KP+ A+ L+  M  +G + PD  T    L ACA + A + GK+ H ++ K GL 
Sbjct: 65  AE--NGKPEEALALYTEMNSKG-IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 121

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            +++ +N L+  YA CG ++ A  +FD M++++ VSW  +I      G    A++LF+ M
Sbjct: 122 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 181

Query: 228 QIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN-NSLIDMYC 284
           +      P   TF  I  AC+    +  G     Y  R  +   +   + +   ++D+  
Sbjct: 182 ESTEGLLPCEITFVGILYACSHCGMVKEGF---EYFRRMREEYKIEPRIEHFGCMVDLLA 238

Query: 285 KCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAEAA 323
           + G +  A +  +SMP + ++  W +++    +HG ++ A
Sbjct: 239 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/612 (37%), Positives = 338/612 (55%), Gaps = 43/612 (7%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL ++++  + +   +IH  A +          +    I  +AS   +  A  +F ++ 
Sbjct: 126 SLLKAVSKVSAFNHGLEIHGLASKLGFVDD--PFIQTGLIAMYASCRRIMDARLLFDKMC 183

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           +P++  WN +I    ++      A+ LF+ M    ++ PD       L AC +    S G
Sbjct: 184 HPDAVAWNMIIDGYCQN-GHYDDALRLFEDM-RSSDMKPDSVILCTVLSACGHAGNLSYG 241

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV---------------------- 192
           +  H  +   G   D ++  +LI+ YA+CG +DLA K+                      
Sbjct: 242 RTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKL 301

Query: 193 ---------FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSIT 242
                    FD M+ER LV W+ MI  + +  +   ALKLF  M Q    PD  T  S+ 
Sbjct: 302 GMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVI 361

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           SAC+ +  L+   W H Y+ R         + VNN+LIDMY KCG+L  AR+VFE+MP++
Sbjct: 362 SACSHVGALAQANWIHTYVDRS---GFGRALSVNNALIDMYAKCGNLVKAREVFENMPRK 418

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           ++ SW+S+I  FA+HG A++A+K F R+  E +  PN +TF+GVL AC H G+V EG   
Sbjct: 419 NVISWSSMINAFAMHGNADSAIKLFRRMK-EVNIEPNGVTFIGVLYACGHAGLVEEGEKL 477

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  MINE+ I+P  EHYGC+VDL  RA  + +A+ L+  MP  P+ +IW SL+ A C+ H
Sbjct: 478 FSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSA-CQVH 536

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
               L E  AK+++E E     G  V+LS +YA  +RWNDVGL+RK M+ KG++KE   S
Sbjct: 537 GEAELGEFAAKRLLELEPD-HDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASS 595

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
            IEI+   H F   D  H Q+ +IY  LD +  KLK  GY P  S   ++D  ++ K+  
Sbjct: 596 RIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTS-GILIDLEEEDKKEL 654

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           +  HSE+LA+  G+++ +    IR+ KNLR+C+DCH   KL+S+++ +EI+VRDR RFHH
Sbjct: 655 VLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHH 714

Query: 603 FKDGSCSCMDYW 614
              G CSC DYW
Sbjct: 715 CSGGICSCRDYW 726



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 201/407 (49%), Gaps = 45/407 (11%)

Query: 48  QLKQIHAQALRT-ALPQQHKTLL---IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
            LKQIHAQ L +   P+   TLL     S     +S + L YA  VF QI NP++   N 
Sbjct: 31  HLKQIHAQILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQ 90

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           L+R  +RS  + P+  +     +   N    D+ +FP  LKA + + AF+ G + H    
Sbjct: 91  LLRHLSRS--SFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G V D +I   LI  YASC  +  A  +FD M     V+WN++ID + Q G +D AL+
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           LF  M+    +PD     ++ SAC     LS G   H ++    D+    D  +  +LI+
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVK---DNGYAIDSHLQTALIN 265

Query: 282 MYCKCGSLDIARQ-------------------------------VFESMPKRDLTSWNSI 310
           MY  CG++D+AR+                               +F+ M +RDL  W+++
Sbjct: 266 MYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAM 325

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+A   + + ALK FD ++ + S  P+ IT + V+SAC+H G +++  ++    ++  
Sbjct: 326 ISGYAESDQPQEALKLFDEMLQKRSV-PDQITMLSVISACSHVGALAQA-NWIHTYVDRS 383

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                L     L+D+ A+ GN+ +A  +  NMP K + + W S+++A
Sbjct: 384 GFGRALSVNNALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINA 429


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 344/600 (57%), Gaps = 31/600 (5%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           N S+   ++  C ++  L   KQ H QAL          L + S +I  ++    L  A 
Sbjct: 81  NRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESD---LFVSSALIDMYSKCGKLSNAR 137

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI--------EQGNVLPDKHTFP 139
            +F +I   N  TW +LI    ++ DA  +A+++F+  +        E+     D     
Sbjct: 138 VLFDEIPRRNIVTWTSLITGYVQNDDAH-EALMVFKEFLFEKSEGNGEEVGTSVDSVAMI 196

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
             L AC+ +   +  +  H    K GL   + + N+L+  YA CG + L+ KVFD+M E+
Sbjct: 197 SVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK 256

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITS-----ACAGLATLSLG 254
            +VSWN MI  + Q G    A ++F  M    +  G  +  +T      ACA    L +G
Sbjct: 257 DVVSWNSMIAVYAQNGLSTDAFEVFHGM---LKAGGGKYNEVTLSTLLLACAHEGALRVG 313

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
           M  H  +++      V +V++  S+IDMYCKCG  ++AR  F+ M ++++ SW ++I G+
Sbjct: 314 MCLHDQVIKM---GYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGY 370

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            +HG A  AL  F +++      PN ITF+ VL+AC+H G + EG  +F+ M +EYN+ P
Sbjct: 371 GMHGFAREALDVFYQMIWA-GVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEP 429

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +EHYGC+VDLL RAG I EA +L+ +M ++ D V+W SLL A C+ H  V L+E  A++
Sbjct: 430 GVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLL-AACRIHKDVELAEISARE 488

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           + + +   C G YVLL+ +YA A RW DV  +R L+ D+G+ K PG S +E+ G  H F 
Sbjct: 489 LFKLDPSNC-GYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFL 547

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
            GD  HPQ ++IY +L+ +  KL+  GY P+ + + + D  ++ K+  +R+HSE+LA+A 
Sbjct: 548 VGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMA-SVLHDVDEEEKEMIVRVHSEKLAVAF 606

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G++N  PG  I V KNLRVC DCH V KLIS+I + EIIVRD  RFHHFKDG CSC DYW
Sbjct: 607 GVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 173/340 (50%), Gaps = 22/340 (6%)

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A+  +L   F  ++  +  + ++WN+LI   AR  D+  +++  F  M  + ++ P++ T
Sbjct: 29  ATNTNLTTLFNKYF--DRTDVYSWNSLIAELARGGDS-CESLRAFSWM-RKLDIKPNRST 84

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           FP A+K+C+ LF  + GKQAH      G  SD++++++LI  Y+ CG L  A  +FD + 
Sbjct: 85  FPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP 144

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP------------DGYTFQSITSAC 245
            R++V+W  +I  +VQ  +   AL +F+  + LFE             D     S+ SAC
Sbjct: 145 RRNIVTWTSLITGYVQNDDAHEALMVFK--EFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           + ++  ++    H   ++     L   + V N+L+D Y KCG + ++R+VF+ M ++D+ 
Sbjct: 203 SRVSNKAVSEGVHGVAIK---VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVV 259

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWNS+I  +A +G +  A + F  ++       N +T   +L AC H G +  G    D 
Sbjct: 260 SWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQ 319

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           +I    +  V+     ++D+  + G  + A +    M  K
Sbjct: 320 VIKMGYVNNVIMATS-IIDMYCKCGQAEMARNAFDGMKEK 358


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 349/591 (59%), Gaps = 18/591 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYA 86
            +N  ++L+ L  C S+ +L++IHA  + + L   H  + I +++++F + +    L YA
Sbjct: 1   MSNEKAILALLQGCNSLKRLRKIHAHVIVSGL---HHHVPIANKLLNFCAISVSGSLAYA 57

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
             +F+Q+E P +  WN++IR  A+S  +   AIV + +M+     +PD  TF F LKAC 
Sbjct: 58  QLLFHQMECPQTEAWNSIIRGFAQS-SSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACE 116

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            + A  + K+ H  + + G  +DV +  +L+  Y++ G + +A +VFD M  R LV+WN 
Sbjct: 117 RIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNA 176

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  F Q G    AL+ + +M+    + DG+T   + S+CA L  L++G+  H +     
Sbjct: 177 MISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFAR--- 233

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           ++ L   + V N+LIDMY KCGSLD A  +F+ M ++D+ +WNS+I+G+ +HGR   A+ 
Sbjct: 234 ENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIY 293

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F +++ E    PN +TF+G+L  C+H+G+V EG  YF++M +++ + P ++HYGCLVDL
Sbjct: 294 CFQQML-EARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDL 352

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
             RAG +D+AL +VSN     D+V+WR LL +C K H +V + E +A   +   G   +G
Sbjct: 353 YGRAGKLDKALEIVSNSS-HNDSVLWRILLGSC-KIHKNVTIGE-IAMNRLSELGATSAG 409

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
             +LL+ +YA  +    V  +RK++  +G    PG S IEI    H+F   D SH  + +
Sbjct: 410 DCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVE 469

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAA--MVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           +Y  L  +  +    GY  D S ++  M+  ++  K +S   HSE+LAIA G+     G 
Sbjct: 470 VYEKLREVIHQASFFGYVGDESISSLDMLSTMETLK-TSCTYHSEKLAIAFGLARTADGT 528

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLRVC+DCH   K +S  FN EIIVRDR RFHHFK G CSC DYW
Sbjct: 529 QIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 354/591 (59%), Gaps = 14/591 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFADLDY 85
           E  F+ ++ LL+     +++ + +++HA  ++T  LP  + +  +   II +     L  
Sbjct: 7   EIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRL---IILYTKCECLGC 63

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF ++   N  +W  +I   ++   A  +A+ LF +M+ + +  P++ TF   L +C
Sbjct: 64  ARHVFDEMRERNVVSWTAMISGYSQRGFAS-EALHLFVQML-RSDTEPNEFTFATVLSSC 121

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
                F  G+Q H+HIFKR   + +++ +SL+  YA  G +  A  VF+ + ER +VS  
Sbjct: 122 TGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 181

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  + Q G  + AL+LF R+Q       Y T+ S+ +A +GLA L  G   H+++LR 
Sbjct: 182 AIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR- 240

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
           C+  L   V++ NSLIDMY KCG+L+ AR++F +MP R + SWN++++G++ HG+    +
Sbjct: 241 CE--LPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVV 298

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLV 383
           K F  +  E    P+S+TF+ VLS C+H G+  +G + FD M+N  + I   +EHYGC++
Sbjct: 299 KLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVI 358

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL RAG ++EA  L+  MP +P A IW SLL A C+ H++  + E V  +++E E    
Sbjct: 359 DLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGA-CRVHSNTNIGEFVGCRLLEIEPE-N 416

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +G YV+LS +YASA RW DV  VR+LM +K V KEPG S IE+D   H F+A D SHP+ 
Sbjct: 417 AGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRR 476

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           ++++  +  +  K K  GY PD S   + D  ++ K+  L  HSE+LA+A G+++   G+
Sbjct: 477 EEVFLKVRELLVKFKESGYVPDQS-CVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGV 535

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P+RV KNLR+C DCH   K +S+++  ++ +RD+ RFHH   G CSC DYW
Sbjct: 536 PLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 345/592 (58%), Gaps = 23/592 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTAL-PQQHK-------TLLIYSRIIHFASFADLDYA 86
           +LL  L +  +++Q   +HA  +R  L P ++         LL  + +  +A    L YA
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 87  FRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            RVF  +   N  TW+ LI     C+R      QA +LF+ M+ QG       +   AL+
Sbjct: 178 RRVFDAMPARNEVTWSALIGGFVLCSRMT----QAFLLFKAMLAQGLCFLSPTSIASALR 233

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           ACA L     G+Q HA + K G+ +D+   NSL+  YA  G +D A  +FD M  +  VS
Sbjct: 234 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           ++ ++  +VQ G  + A  +F++MQ    EPD  T  S+  AC+ LA L  G  +H  ++
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
                 L ++  + N+LIDMY KCG +D++RQVF  MP RD+ SWN++I G+ +HG  + 
Sbjct: 354 ---IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKE 410

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A   F  +     F P+ +TF+ +LSAC+H G+V EG+ +F VM + Y +TP +EHY C+
Sbjct: 411 ATALFLEMN-NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL+R G +DEA   + +MP++ D  +W +LL A C+ + ++ L ++V++ +I+  G  
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA-CRVYKNIDLGKKVSR-MIQELGPE 527

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G +VLLS +Y++A R+++   VR +   +G  K PGCS IEI+G  H F  GD SHPQ
Sbjct: 528 GTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQ 587

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           + +IY  LD I   +K  GY PD S   + D  ++ K+ +L  HSE+LAIA GIL+L   
Sbjct: 588 SPEIYRELDNILVGIKKLGYQPDTS-FVLQDLEEEEKEKALICHSEKLAIAYGILSLSED 646

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             I V KNLRVC DCH V K IS +    IIVRD  RFHHFK+G CSC D+W
Sbjct: 647 KTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 150/299 (50%), Gaps = 16/299 (5%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           V P+ +TFPFALKAC+ L     G+  H H    GL +D++++ +L+  Y  C  L  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAG 247
            +F  M  R LV+WN M+  +   G +  A+     MQ+      P+  T  ++    A 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 248 LATLSLGMWAHAYILRHCDH------SLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMP 300
              L+ G   HAY +R C H      S +TD VL+  +L+DMY KCGSL  AR+VF++MP
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSE 358
            R+  +W+++I GF L  R   A   F  ++ +     SP SI     L AC     +  
Sbjct: 186 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRM 243

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G +    ++ +  +   L     L+ + A+AG ID+A+ L   M +K D V + +L+  
Sbjct: 244 G-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 300


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 349/607 (57%), Gaps = 51/607 (8%)

Query: 44  KSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           K+   ++ IH  A++T   Q      + L +Y ++ +      +D+A ++F   +NPN +
Sbjct: 38  KNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNY------IDHAIKLFRCTQNPNVY 91

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            + +LI     S  +   AI LF +M+ + +VL D +     LKAC    A   GK+ H 
Sbjct: 92  LYTSLIDGFV-SFGSYTDAINLFCQMVRK-HVLADNYAVTAMLKACVLQRALGSGKEVHG 149

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS---------------- 203
            + K GL  D  I   L+  Y  CG L+ A K+FD M ER +V+                
Sbjct: 150 LVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEE 209

Query: 204 ---------------WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
                          W ++ID  V+ GEF+  L++FR MQ+   EP+  TF  + SACA 
Sbjct: 210 AIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQ 269

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L LG W HAY +R C   +  +  V  +LI+MY +CG +D A+ +F+ +  +D++++
Sbjct: 270 LGALELGRWIHAY-MRKC--GVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTY 326

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           NS+I G ALHG++  A++ F  ++ +E   PN ITFVGVL+AC+H G+V  G + F+ M 
Sbjct: 327 NSMIGGLALHGKSIEAVELFSEML-KERVRPNGITFVGVLNACSHGGLVDLGGEIFESME 385

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
             + I P +EHYGC+VD+L R G ++EA   +  M ++ D  +  SLL AC K H ++ +
Sbjct: 386 MIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSAC-KIHKNIGM 444

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
            E+VAK ++     I SG +++LS  YAS  RW+    VR+ M   G+ KEPGCSSIE++
Sbjct: 445 GEKVAK-LLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVN 503

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
              HEFF+GD  HP+ K+IY  L+ ++   K  GY P  ++ A+ D  D+ K+ +L +HS
Sbjct: 504 NAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLP-ATEVALHDIDDEQKELALAVHS 562

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLAI  G+++ +    +RV KNLR+C DCH + KLI++I   +I+VRDR RFHHF++G 
Sbjct: 563 ERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGE 622

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 623 CSCKDYW 629


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/620 (38%), Positives = 342/620 (55%), Gaps = 27/620 (4%)

Query: 4    AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTA 60
            A+VQ G P     + S+F   +N+    N  +L+S L  C  +S LK    IH   ++  
Sbjct: 404  ALVQTGYPE---EALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD 460

Query: 61   LPQQHKT----LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
            +     T    + +Y++   F +      A   F ++ + +  TWN+LI   A+  D   
Sbjct: 461  MDSDLSTGTALVSMYAKCGFFTA------ALTTFNRMSSRDIVTWNSLINGYAQIGDPY- 513

Query: 117  QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
             AI +F ++     + PD  T    + ACA L    QG   H  I K G  SD ++ N+L
Sbjct: 514  NAIDMFYKL-RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNAL 572

Query: 177  IHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
            I  YA CG L  A  +F+     +  V+WNV+I A++Q G    A+  F +M++  F P+
Sbjct: 573  IDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPN 632

Query: 235  GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
              TF S+  A A LA    GM  HA I++      +++ LV NSLIDMY KCG LD + +
Sbjct: 633  SVTFVSVLPAAAYLAAFREGMAFHACIIQM---GFLSNTLVGNSLIDMYAKCGQLDYSEK 689

Query: 295  VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
            +F  M  +D  SWN+++ G+A+HG  + A+  F  L+ E     +S++FV VLSAC H G
Sbjct: 690  LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS-LMQESQVQIDSVSFVSVLSACRHAG 748

Query: 355  MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
            +V EGR  F  M ++Y+I P LEHY C+VDLL RAG  DE L  +  MP++PDA +W +L
Sbjct: 749  LVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGAL 808

Query: 415  LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
            L +C + H++V L E     +++ E       +V+LS +YA + RW D G  R  M D G
Sbjct: 809  LGSC-RMHSNVKLGEVALDHLVKLEPR-NPAHFVVLSSIYAQSGRWADAGKARSKMNDLG 866

Query: 475  VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
            + K PGCS +E+    H F  GD SHPQ + ++   + + EK++  GY PD S      E
Sbjct: 867  LKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVE 926

Query: 535  LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
             +D K+  L  HSERLAI   +LN  PG  I++ KNLRVC DCH  TK IS+I    IIV
Sbjct: 927  EED-KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIV 985

Query: 595  RDRARFHHFKDGSCSCMDYW 614
            RD  RFHHF+DG CSC DYW
Sbjct: 986  RDATRFHHFEDGICSCNDYW 1005



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 200/424 (47%), Gaps = 45/424 (10%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++ N+      L+ CK ++ L QIHAQ + +     H    I   I  ++ F   D A  
Sbjct: 28  TYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHS---ITHLINLYSLFHKCDLARS 84

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF    NP+   WN++IRA  RS     +A+ ++  M+E+G + PDK+TF F LKAC   
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYN-EALEMYYCMVEKG-LEPDKYTFTFVLKACTGA 142

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +G   H  I +RGL  DV+I   L+  Y+  G L  A +VFD M +R +V+WN MI
Sbjct: 143 LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 202

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
               Q  +   A+  FR MQ++  EP   +  ++      L+ + L    H Y+ R  D 
Sbjct: 203 AGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR-DF 261

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           S      V+N LID+Y KCG +D+AR+VF+ M  +D  SW +++ G+A +G     L+ F
Sbjct: 262 SSA----VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 317

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE------YNITPVLEHYG- 380
           D++ +  +   N ++ V    A      + +G++     + +         TP++  Y  
Sbjct: 318 DKMKL-GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376

Query: 381 -----------------------CLVDLLARAGNIDEALHL---VSNMPMKPDAVIWRSL 414
                                   ++  L + G  +EAL L   + N  MKP+ V   S+
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 415 LDAC 418
           L AC
Sbjct: 437 LPAC 440



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 169/342 (49%), Gaps = 8/342 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++   D+D A RVF Q+ + +  +W T++   A +     + + LF +M + GNV  +K 
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN-GCFVEVLELFDKM-KLGNVRINKV 330

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +   A  A A      +GK+ H    ++ + SD+ +   L+  YA CG  + A ++F  +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGL 390

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGM 255
             R LV+W+ +I A VQ G  + AL LF+ MQ    +P+  T  SI  ACA L+ L LG 
Sbjct: 391 QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H + ++     + +D+    +L+ MY KCG    A   F  M  RD+ +WNS+I G+A
Sbjct: 451 SIHCFTVK---ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             G    A+  F +L +  + +P++ T VGV+ AC     + +G     +++ +      
Sbjct: 508 QIGDPYNAIDMFYKLRL-SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV-KLGFESD 565

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                 L+D+ A+ G++  A  L +      D V W  ++ A
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 332/570 (58%), Gaps = 17/570 (2%)

Query: 46  MSQLKQIHAQALRTALPQQ--HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           M+Q+ QI AQ + + +P       L+    I   A  A++  A  +F  + +PN F  N 
Sbjct: 1   MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNA 60

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
            ++A A++      AI  F   +   N   PD+ TF   LKACA L     G++ HA + 
Sbjct: 61  TLKALAQN-SHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVT 119

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGEFDSA 220
           K+G  S++++ NSLI  Y   G+L LA  +FD M   +R++V WN MI  + Q  ++  A
Sbjct: 120 KQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDA 179

Query: 221 LKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           +++FR MQ      P+  T  S+  ACA L  L LG W   +I R     +   + + N+
Sbjct: 180 IEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRR---EMALGLFLGNA 236

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L DMY KCG +  AR+VF  M +RD+ SW+ II G A++G A+ A   F  ++ +    P
Sbjct: 237 LADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEML-DCGEKP 295

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N + F+G+L+AC H G+V +G + F+ M  EY ++P +EHYGC+VDLL+RAG +D+A  +
Sbjct: 296 NDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDM 355

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +S+MPMKP+ +IW +LL   C+ +      + V + ++E +    SG YV L+ VY+S  
Sbjct: 356 ISSMPMKPNVIIWGALLGG-CRIYRDSGRGQRVVQHILELDSD-HSGSYVYLANVYSSMG 413

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           R +D    R  M + GV K PGCS IE+D   HEFF GD SHP++ +IY  +  +  K+K
Sbjct: 414 RLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMK 473

Query: 519 SRGYTPDYSQAA-MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
             GY P        +DE  + K+ +L +HSE+LAIA G+++   G  IRV KNLR+C DC
Sbjct: 474 LAGYKPKTDLVVHSIDE--EEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDC 531

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           H+  K+IS I   EIIVRDR+RFHHFKDG+
Sbjct: 532 HDAAKIISGIVKREIIVRDRSRFHHFKDGA 561


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/533 (40%), Positives = 314/533 (58%), Gaps = 10/533 (1%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D AF+VF  I + N  +W   I      V    +AI +F+R++E G + PD  +    L
Sbjct: 159 IDNAFKVFDDIPDKNFASWTATISGYV-GVGKCREAIDMFRRLLEMG-LRPDSFSLVEVL 216

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC        G+    +I + G+V +V++  +L+ FY  CG+++ A  VFD MLE+++V
Sbjct: 217 SACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIV 276

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW+ MI  +   G    AL LF +M     +PD Y    +  +CA L  L LG WA   I
Sbjct: 277 SWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLI 336

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
                +  + + ++  +LIDMY KCG +D A +VF  M K+D   WN+ I G A+ G  +
Sbjct: 337 ---NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVK 393

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL  F ++  +    P+  TFVG+L AC H G+V EGR YF+ M   + +TP +EHYGC
Sbjct: 394 DALGLFGQME-KSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGC 452

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDLL RAG +DEA  L+ +MPM+ +A++W +LL   C+ H    L E V K++I  E  
Sbjct: 453 MVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG-CRLHRDTQLVEVVLKKLIALE-P 510

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             SG YVLLS +YA++ +W +   +R +M+++GV K PG S IE+DG+ H+F  GDTSHP
Sbjct: 511 WHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHP 570

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
            +++IY  L  + + LK+ GY P  +   + D  ++ K+  +  HSE+LA+A G+++  P
Sbjct: 571 LSEKIYAKLGELAKDLKAAGYVPT-TDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAP 629

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              I V KNLRVC DCHE  K ISRI   EIIVRD  RFH F DG CSC DYW
Sbjct: 630 NDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 206/376 (54%), Gaps = 17/376 (4%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFADLDYAFRVFYQIENPNSFTWNTL 104
           +  LK IHA  LR  L +    L   ++++ F+ +F + +Y+FR+  Q + PN F +NT+
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLL---NKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTM 79

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           IR    + D   ++I ++  M ++G + PD  TFPF LKACA +     G + H+ + K 
Sbjct: 80  IRGLVLN-DCFQESIEIYHSMRKEG-LSPDSFTFPFVLKACARVLDSELGVKMHSLVVKA 137

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G  +D ++  SLI+ Y  CG +D A KVFD++ +++  SW   I  +V  G+   A+ +F
Sbjct: 138 GCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMF 197

Query: 225 RR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           RR +++   PD ++   + SAC     L  G W   YI    ++ +V +V V  +L+D Y
Sbjct: 198 RRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYIT---ENGMVRNVFVATALVDFY 254

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG+++ AR VF+ M ++++ SW+S+I G+A +G  + AL  F ++ + E   P+    
Sbjct: 255 GKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM-LNEGLKPDCYAM 313

Query: 344 VGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           VGVL +C   G +  G D+   +I  NE+    VL     L+D+ A+ G +D A  +   
Sbjct: 314 VGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGT--ALIDMYAKCGRMDRAWEVFRG 370

Query: 402 MPMKPDAVIWRSLLDA 417
           M  K D V+W + +  
Sbjct: 371 MR-KKDRVVWNAAISG 385


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 312/528 (59%), Gaps = 10/528 (1%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF ++   +  +WNTL+  CA       +A+   ++M  +G   PD  T    L   A 
Sbjct: 125 KVFDEMIERDVVSWNTLVLGCAEE-GRHHEALGFVRKMCREG-FRPDSFTLSTVLPIFAE 182

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                +G + H   F+ G  SDV++ +SLI  YA+C   D + KVFDN+  R  + WN +
Sbjct: 183 CADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSL 242

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +    Q G  + AL +FRRM Q    P   TF S+   C  LA+L  G   HAY++  C 
Sbjct: 243 LAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI--CG 300

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                +V +++SLIDMYCKCG + IA  +F+ M   D+ SW ++I+G+ALHG A  AL  
Sbjct: 301 -GFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVL 359

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+R+ +  +  PN ITF+ VL+AC+H G+V +G  YF  M N Y I P LEH+  L D L
Sbjct: 360 FERMELGNA-KPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTL 418

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG +DEA + +S M +KP A +W +LL AC + H + +L+EEVAK+++E E     G 
Sbjct: 419 GRAGELDEAYNFISKMQIKPTASVWSTLLRAC-RVHKNTMLAEEVAKKIMELEPRSI-GS 476

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           +V+LS +Y+++ RWN+   +R+ M  KG+ K+P CS IE+    H F A D SHP   +I
Sbjct: 477 HVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRI 536

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              L+   E++   G+ P+ ++    D  ++ K   L  HSE+LAI  GI++   G  IR
Sbjct: 537 IDALNAFSEQMAREGHVPN-TEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIR 595

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCH VTK IS++ + EI+VRD  RFHHFKDG+CSC D+W
Sbjct: 596 VMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 156/342 (45%), Gaps = 40/342 (11%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH---TFPFALKACAYLFAFSQGKQA 157
           W   IRA A +      A+ LF RM  + +  P      + P ALK+CA L   + G   
Sbjct: 16  WAQQIRAAA-AEGHFCDAVSLFLRM--RASAAPRSSVPASLPAALKSCAALGLSALGASL 72

Query: 158 HAHIFKRGLVSDVYINNSLIHFYAS--CGHLDLAN-----------------KVFDNMLE 198
           HA   + G  +D +  N+L++ Y    C +LD                    KVFD M+E
Sbjct: 73  HALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIE 132

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWA 257
           R +VSWN ++    + G    AL   R+M +  F PD +T  ++    A  A +  G+  
Sbjct: 133 RDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEV 192

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           H +  R   +   +DV V +SLIDMY  C   D + +VF+++P RD   WNS++ G A +
Sbjct: 193 HGFAFR---NGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQN 249

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           G  E AL  F R+ ++    P  +TF  ++  C +   +  G+      ++ Y I    E
Sbjct: 250 GSVEEALGIFRRM-LQAGVRPVPVTFSSLIPVCGNLASLRFGKQ-----LHAYVICGGFE 303

Query: 378 H----YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                   L+D+  + G I  A H + +    PD V W +++
Sbjct: 304 DNVFISSSLIDMYCKCGEISIA-HCIFDKMSSPDVVSWTAMI 344



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 13/318 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S++L    EC  + +  ++H  A R          +  S I  +A+    DY+ +VF  +
Sbjct: 174 STVLPIFAECADVKRGLEVHGFAFRNGFDSD--VFVGSSLIDMYANCTRTDYSVKVFDNL 231

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +   WN+L+  CA++   + +A+ +F+RM++ G V P   TF   +  C  L +   
Sbjct: 232 PVRDHILWNSLLAGCAQNGSVE-EALGIFRRMLQAG-VRPVPVTFSSLIPVCGNLASLRF 289

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GKQ HA++   G   +V+I++SLI  Y  CG + +A+ +FD M    +VSW  MI  +  
Sbjct: 290 GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYAL 349

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    AL LF RM++   +P+  TF ++ +AC+    +  G W   Y     +H  +  
Sbjct: 350 HGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKG-W--KYFKSMSNHYGIVP 406

Query: 273 VLVN-NSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAEAALKYFDRL 330
            L +  +L D   + G LD A      M  +   S W++++    +H     A +   ++
Sbjct: 407 TLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKI 466

Query: 331 VVEESFSPNSITFVGVLS 348
           +  E   P SI    VLS
Sbjct: 467 MELE---PRSIGSHVVLS 481



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 109/249 (43%), Gaps = 48/249 (19%)

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA---CAGLATLSLGMWAHAY 260
           W   I A    G F  A+ LF RM+    P      S+ +A   CA L   +LG   HA 
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCK--CGSLDIA-----------------RQVFESMPK 301
            +R        D    N+L+++YCK  C  LD                   R+VF+ M +
Sbjct: 76  AIRS---GAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIE 132

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL---SACN--HRGMV 356
           RD+ SWN+++LG A  GR   AL  F R +  E F P+S T   VL   + C    RG+ 
Sbjct: 133 RDVVSWNTLVLGCAEEGRHHEALG-FVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE 191

Query: 357 SEG---RDYF--DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
             G   R+ F  DV +              L+D+ A     D ++ +  N+P++ D ++W
Sbjct: 192 VHGFAFRNGFDSDVFVGS-----------SLIDMYANCTRTDYSVKVFDNLPVR-DHILW 239

Query: 412 RSLLDACCK 420
            SLL  C +
Sbjct: 240 NSLLAGCAQ 248


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 345/592 (58%), Gaps = 23/592 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTAL-PQQHK-------TLLIYSRIIHFASFADLDYA 86
           +LL  L +  +++Q   +HA  +R  L P ++         LL  + +  +A    L YA
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292

Query: 87  FRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            RVF  +   N  TW+ LI     C+R      QA +LF+ M+ QG       +   AL+
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMT----QAFLLFKAMLAQGLCFLSPTSIASALR 348

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           ACA L     G+Q HA + K G+ +D+   NSL+  YA  G +D A  +FD M  +  VS
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           ++ ++  +VQ G  + A  +F++MQ    EPD  T  S+  AC+ LA L  G  +H  ++
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
                 L ++  + N+LIDMY KCG +D++RQVF  MP RD+ SWN++I G+ +HG  + 
Sbjct: 469 ---IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKE 525

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A   F  +     F P+ +TF+ +LSAC+H G+V EG+ +F VM + Y +TP +EHY C+
Sbjct: 526 ATALFLEMN-NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL+R G +DEA   + +MP++ D  +W +LL A C+ + ++ L ++V++ +I+  G  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA-CRVYKNIDLGKKVSR-MIQELGPE 642

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G +VLLS +Y++A R+++   VR +   +G  K PGCS IEI+G  H F  GD SHPQ
Sbjct: 643 GTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQ 702

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           + +IY  LD I   +K  GY PD S   + D  ++ K+ +L  HSE+LAIA GIL+L   
Sbjct: 703 SPEIYRELDNILVGIKKLGYQPDTS-FVLQDLEEEEKEKALICHSEKLAIAYGILSLSED 761

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             I V KNLRVC DCH V K IS +    IIVRD  RFHHFK+G CSC D+W
Sbjct: 762 KTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 179/355 (50%), Gaps = 19/355 (5%)

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPD 134
           H AS   L  A  +F QI +P+  T+N LIRA  + S  A    + L++RM+    V P+
Sbjct: 67  HIAS-GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRH-RVAPN 124

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            +TFPFALKAC+ L     G+  H H    GL +D++++ +L+  Y  C  L  A  +F 
Sbjct: 125 NYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFA 184

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI---LFEPDGYTFQSITSACAGLATL 251
            M  R LV+WN M+  +   G +  A+     MQ+      P+  T  ++    A    L
Sbjct: 185 TMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGAL 244

Query: 252 SLGMWAHAYILRHCDH------SLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           + G   HAY +R C H      S +TD VL+  +L+DMY KCGSL  AR+VF++MP R+ 
Sbjct: 245 AQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 304

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSEGRDY 362
            +W+++I GF L  R   A   F  ++ +     SP SI     L AC     +  G + 
Sbjct: 305 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQ 361

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              ++ +  +   L     L+ + A+AG ID+A+ L   M +K D V + +L+  
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 415


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 347/610 (56%), Gaps = 30/610 (4%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           F++ R    +   SS   ++  C S+  +   KQ H QA       Q    +  + I+ +
Sbjct: 64  FSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF--VFGYQSDIFVSSALIVMY 121

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN-----VL 132
           ++   L+ A +VF +I   N  +W ++IR    + +A   A+ LF+ ++   N     + 
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNA-LDAVSLFKDLLVDENDDDDAMF 180

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH--LDLAN 190
            D       + AC+ + A    +  H+ + KRG    V + N+L+  YA  G   + +A 
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           K+FD ++++  VS+N ++  + Q G  + A ++FRR   L +    TF +IT +   LA 
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRR---LVKNKVVTFNAITLSTVLLAV 297

Query: 251 -----LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
                L +G   H  ++R     L  DV+V  S+IDMYCKCG ++ AR+ F+ M  +++ 
Sbjct: 298 SHSGALRIGKCIHDQVIRM---GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SW ++I G+ +HG A  AL+ F  ++ +    PN ITFV VL+AC+H G+  EG  +F+ 
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMI-DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNA 413

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M   + + P LEHYGC+VDLL RAG + +A  L+  M MKPD++IW SLL A C+ H +V
Sbjct: 414 MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLL-AACRIHKNV 472

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L+E    ++ E +   C G Y+LLS +YA A RW DV  VR +M ++G+ K PG S +E
Sbjct: 473 ELAEISVARLFELDSSNC-GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLE 531

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLR 544
           ++G  H F  GD  HPQ ++IY FL  ++ KL   GY  + S     VDE  + K+ +LR
Sbjct: 532 LNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE--EEKEMTLR 589

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
           +HSE+LAIA GI+N  PG  + V KNLRVC DCH V KLIS+I + E +VRD  RFHHFK
Sbjct: 590 VHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFK 649

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 650 DGGCSCGDYW 659



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 178/345 (51%), Gaps = 18/345 (5%)

Query: 72  SRIIHFASFADLDYAFRVFYQ-IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
           SR++H     +      +F + ++  + F+WN++I   ARS D+  +A++ F  M  + +
Sbjct: 14  SRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEALLAFSSM-RKLS 71

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           + P + +FP A+KAC+ LF    GKQ H   F  G  SD++++++LI  Y++CG L+ A 
Sbjct: 72  LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDAR 131

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--------LFEPDGYTFQSIT 242
           KVFD + +R++VSW  MI  +   G    A+ LF+ + +        +F  D     S+ 
Sbjct: 132 KVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF-LDSMGLVSVI 190

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC--GSLDIARQVFESMP 300
           SAC+ +    L    H+++++         V V N+L+D Y K   G + +AR++F+ + 
Sbjct: 191 SACSRVPAKGLTESIHSFVIK---RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            +D  S+NSI+  +A  G +  A + F RLV  +  + N+IT   VL A +H G +  G+
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
              D +I       V+     ++D+  + G ++ A      M  K
Sbjct: 308 CIHDQVIRMGLEDDVIVGTS-IIDMYCKCGRVETARKAFDRMKNK 351


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 342/583 (58%), Gaps = 17/583 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+L ++ + K++   + IH  A R     ++   +  + +  +     +  A  VF  + 
Sbjct: 248 SVLPAVADLKALRIGRSIHGYAFRAGF--EYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + N  +WNT+I   A++ +++ +A   F +M+++G V P   +   AL ACA L    +G
Sbjct: 306 SRNVVSWNTMIDGYAQNGESE-EAFATFLKMLDEG-VEPTNVSMMGALHACANLGDLERG 363

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H  + ++ +  DV + NSLI  Y+ C  +D+A  VF N+  +++V+WN MI  + Q 
Sbjct: 364 RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQN 423

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  + AL LF  MQ    +PD +T  S+ +A A L+      W H   +R     +  +V
Sbjct: 424 GCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL---MDKNV 480

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V  +LID + KCG++  AR++F+ M +R + +WN++I G+  +G    AL  F+ +   
Sbjct: 481 FVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQ-N 539

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
            S  PN ITF+ V++AC+H G+V EG  YF+ M   Y + P ++HYG +VDLL RAG +D
Sbjct: 540 GSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLS 451
           +A   + +MP+KP   +  ++L AC + H +V L E+ A ++  ++ + G   G +VLL+
Sbjct: 600 DAWKFIQDMPVKPGITVLGAMLGAC-RIHKNVELGEKTADELFDLDPDDG---GYHVLLA 655

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YASA  W+ V  VR  M  KG+ K PGCS +E+    H F++G T+HPQ+K+IY +L+
Sbjct: 656 NMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLE 715

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + +++K+ GY PD +    V+E  D K+  L  HSERLAIA G+LN + G  I + KNL
Sbjct: 716 TLGDEMKAAGYVPDTNSIHDVEE--DVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNL 773

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCHE TK IS +   EIIVRD  RFHHFK+G CSC DYW
Sbjct: 774 RVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 191/378 (50%), Gaps = 13/378 (3%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNS 98
           L  C S+ +L QI    ++     +H   L  +++I  F  F  +  A RVF  +E+   
Sbjct: 51  LELCTSLKELHQILPLIIKNGFYNEH---LFQTKLISLFCKFNSITEAARVFEPVEHKLD 107

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
             ++T+++  A++   +  A+  ++RM     V+P  + F + L+         +G++ H
Sbjct: 108 VLYHTMLKGYAKNSTLR-DAVRFYERM-RCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
             +   G  S+++   ++++ YA C  ++ A K+F+ M +R LVSWN ++  + Q G   
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 219 SALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            A+++  +MQ   + PD  T  S+  A A L  L +G   H Y  R     +V    V  
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN---VAT 282

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +++D Y KCGS+  AR VF+ M  R++ SWN++I G+A +G +E A   F ++ ++E   
Sbjct: 283 AMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKM-LDEGVE 341

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P +++ +G L AC + G +  GR Y   +++E  I   +     L+ + ++   +D A  
Sbjct: 342 PTNVSMMGALHACANLGDLERGR-YVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAAS 400

Query: 398 LVSNMPMKPDAVIWRSLL 415
           +  N+  K   V W +++
Sbjct: 401 VFGNLKHKT-VVTWNAMI 417



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 185/423 (43%), Gaps = 54/423 (12%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL    E   + + ++IH   +      Q     + + +  +A    ++ A+++F ++  
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNGF--QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQ 205

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            +  +WNT++   A++  A+    V+ Q  +++    PD  T    L A A L A   G+
Sbjct: 206 RDLVSWNTVVAGYAQNGFARRAVQVVLQ--MQEAGQKPDSITLVSVLPAVADLKALRIGR 263

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H + F+ G    V +  +++  Y  CG +  A  VF  M  R++VSWN MID + Q G
Sbjct: 264 SIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG 323

Query: 216 EFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-DV 273
           E + A   F +M     EP   +      ACA L  L  G + H    R  D   +  DV
Sbjct: 324 ESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVH----RLLDEKKIGFDV 379

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V NSLI MY KC  +DIA  VF ++  + + +WN++ILG+A +G    AL  F  +   
Sbjct: 380 SVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSH 439

Query: 334 ESFSPNSITFVGVLSAC---------------------------------NHR--GMVSE 358
           +   P+S T V V++A                                   H   G +  
Sbjct: 440 D-IKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQT 498

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM---PMKPDAVIWRSLL 415
            R  FD+M   + IT     +  ++D     G+  EAL L + M    +KP+ + + S++
Sbjct: 499 ARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVI 553

Query: 416 DAC 418
            AC
Sbjct: 554 AAC 556


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 334/585 (57%), Gaps = 15/585 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHK-TLLIYSRIIHFASFADLDYAFRVFYQI 93
           +++S++      ++L QIHA  +RT L Q    +L   SRI       D  Y+ R F Q+
Sbjct: 5   TVISAIKSVSHKTRLLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQL 64

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            +P    +NT+IRAC+ S D+  + ++L++ M  +G +  D  +  FA+K+C        
Sbjct: 65  SHPLVSHYNTMIRACSMS-DSPQKGLLLYRDMRRRG-IAADPLSSSFAVKSCIRFLYLPG 122

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q H +IFK G   D  +  +++  Y+ C     A KVFD M  R  V+WNVMI   ++
Sbjct: 123 GVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIR 182

Query: 214 FGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                 AL LF  MQ      EPD  T   +  ACA L  L  G   H YI+   +    
Sbjct: 183 NNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIM---ERGYR 239

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             + + NSLI MY +CG LD A +VF+ M  +++ SW+++I G A++G    A++ F+ +
Sbjct: 240 DALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEM 299

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +      P+  TF GVLSAC++ GMV EG  +F  M  E+ +TP + HYGC+VDLL RAG
Sbjct: 300 L-RIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAG 358

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            +D+A  L+ +M +KPD+ +WR+LL A C+ H  V L E V   +IE +    +G YVLL
Sbjct: 359 LLDKAYQLIMSMVVKPDSTMWRTLLGA-CRIHGHVTLGERVIGHLIELKAQE-AGDYVLL 416

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
             +Y+SA  W  V  VRKLM +K +   PGCS+IE+ G  HEF   D SH + ++IY  L
Sbjct: 417 LNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETL 476

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQS-SLRLHSERLAIALGILNLKPGMPIRVFK 569
           D I+ +L+  GY  + S    + ++DD ++   L  HSE+LA+A G+L   PG  +RV  
Sbjct: 477 DEINHQLRIAGYVVELSSE--LHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVAS 534

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH   KL S ++N ++++RD  RFHHF+ G CSC DYW
Sbjct: 535 NLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/584 (38%), Positives = 342/584 (58%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFY 91
           ++SLL S    K++   KQ+HA+  +  +       L+ +++++     + L  A  +F 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNP---LLATKLVNLYCICNSLTNAHLLFD 60

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   N F WN +IR  A +      AI L+ +M + G ++PDK TFPF LKAC+ L A 
Sbjct: 61  RISKRNLFLWNVMIRGYAWN-GPYELAISLYYQMRDYG-LVPDKFTFPFVLKACSALSAM 118

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +GK+ H  + + GL SDV++  +LI  YA CG ++ A +VFD + ER +V WN M+  +
Sbjct: 119 EEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATY 178

Query: 212 VQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G+ D +L L R M     +P   TF    +A A    L  G   H Y  RH      
Sbjct: 179 SQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRH---GFE 235

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           ++  V  +L+DMY K GS+++AR +FE + ++ + SWN++I G+A+HG A  AL  F  +
Sbjct: 236 SNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM 295

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ ITFVGVL+AC+H G+++EG+ +F  MI+++NI P ++HY C++DLL   G
Sbjct: 296 --KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCG 353

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++EA  L+  M ++PDA +W +LL +C K H +V + E   ++++E E     G YV+L
Sbjct: 354 RLEEAYKLIMEMRVEPDAGVWGALLHSC-KIHGNVEMGELALEKLVELEPDD-GGNYVIL 411

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA A +W+ V  +R LM +KG+ K   CS IE+    H F + DTSHP+++ IY  L
Sbjct: 412 SNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAEL 471

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
               + +K  GY P    +   D  DD K   +  HSERLAIA G+++   G  + + KN
Sbjct: 472 KRTGKLMKEAGYAPQVG-SVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKN 530

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C+DCH   K IS+I   EI +RD  R+HHFKDG CSC D+W
Sbjct: 531 LRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/592 (39%), Positives = 343/592 (57%), Gaps = 23/592 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKT--------LLIYSRIIHFASFADLDYA 86
           +LL  L +  +++Q   +HA  +R  L     +        LL  + +  +A    L YA
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292

Query: 87  FRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            RVF  +   N  TW+ LI     C+R      QA +LF+ M+ QG       +   AL+
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMT----QAFLLFKAMLAQGLCFLSPTSIASALR 348

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           ACA L     G+Q HA + K G+ +D+   NSL+  YA  G +D A  +FD M  +  VS
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           ++ ++  +VQ G  + A  +F++MQ    EPD  T  S+  AC+ LA L  G  +H  ++
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
                 L ++  + N+LIDMY KCG +D++RQVF  MP RD+ SWN++I G+ +HG  + 
Sbjct: 469 ---IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKE 525

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A   F  +     F P+ +TF+ +LSAC+H G+V EG+ +F VM + Y +TP +EHY C+
Sbjct: 526 ATALFLEMN-NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICM 584

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL+R G +DEA   + +MP++ D  +W +LL A C+ + ++ L ++V++ +I+  G  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA-CRVYKNIDLGKKVSR-MIQELGPE 642

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G +VLLS +Y++A R+++   VR +   +G  K PGCS IEI+G  H F  GD SHPQ
Sbjct: 643 GTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQ 702

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           + +IY  LD I   +K  GY PD S   + D  ++ K+ +L  HSE+LAIA GIL+L   
Sbjct: 703 SPEIYRELDNILVGIKKLGYQPDTS-FVLQDLEEEEKEKALICHSEKLAIAYGILSLSED 761

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             I V KNLRVC DCH V K IS +    IIVRD  RFHHFK+G CSC D+W
Sbjct: 762 KTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 177/355 (49%), Gaps = 19/355 (5%)

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPD 134
           H AS   L  A  +F QI +P+  T+N LIRA  + S  A    + L++RM+    V P+
Sbjct: 67  HIAS-GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRH-RVAPN 124

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            +TFPFALKAC+ L     G+  H H    GL +D++++ +L+  Y  C  L  A  +F 
Sbjct: 125 NYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFA 184

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI---LFEPDGYTFQSITSACAGLATL 251
            M  R LV+WN M+  +   G +  A+     MQ+      P+  T  ++    A    L
Sbjct: 185 TMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGAL 244

Query: 252 SLGMWAHAYILRHCDHS-------LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           + G   HAY +R C HS       L   VL+  +L+DMY KCGSL  AR+VF++MP R+ 
Sbjct: 245 AQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 304

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSEGRDY 362
            +W+++I GF L  R   A   F  ++ +     SP SI     L AC     +  G + 
Sbjct: 305 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQ 361

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              ++ +  +   L     L+ + A+AG ID+A+ L   M +K D V + +L+  
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 415


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 342/610 (56%), Gaps = 56/610 (9%)

Query: 45  SMSQL-KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           S +QL K+IH   L+  L +     +  + ++ +   A ++YA  VF ++   +  +W+T
Sbjct: 138 SWTQLGKEIHGFVLKKGLDRD--VFVGNALMLMYGECACVEYARLVFDKMMERDVVSWST 195

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA----FSQGKQAHA 159
           +IR+ +R+ +    A+ L + M     V P +     A+ +   LFA       GK  HA
Sbjct: 196 MIRSLSRNKEFD-MALELIREM-NFMQVRPSE----VAMVSMVNLFADTANMRMGKAMHA 249

Query: 160 HIFKRGLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI--------- 208
           ++ +        V    +L+  YA CGHL LA ++F+ + ++++VSW  MI         
Sbjct: 250 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 309

Query: 209 ----------------------DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
                                  A+ Q    D A  LF +M+     P   T  S+ S C
Sbjct: 310 EEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC 369

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A    L LG W H+YI +     +  D ++N +L+DMY KCG ++ A ++F     RD+ 
Sbjct: 370 AVAGALDLGKWVHSYIDKE---RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC 426

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
            WN+II GFA+HG  E AL  F  +   +   PN ITF+G+L AC+H G+V+EG+  F+ 
Sbjct: 427 MWNAIITGFAMHGYGEEALDIFAEME-RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 485

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M++ + + P +EHYGC+VDLL RAG +DEA  ++ +MP+KP+ ++W +L+ A C+ H + 
Sbjct: 486 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV-AACRLHKNP 544

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L E  A Q++E E   C G  VL+S +YA+A RW+D   VRK M   G+ KEPG S IE
Sbjct: 545 QLGELAATQLLEIEPENC-GYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIE 603

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLR 544
           ++G  HEF  GD SHPQ ++I   L  +  KL   GY PD S   + +DE  + K+++L 
Sbjct: 604 VNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDE--EEKETALT 661

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LA+A G+++  P  PIR+ KNLRVC DCH  TKL+S+I+   IIVRDR RFHHF+
Sbjct: 662 YHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFR 721

Query: 605 DGSCSCMDYW 614
           +G CSC DYW
Sbjct: 722 EGYCSCGDYW 731



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 162/350 (46%), Gaps = 29/350 (8%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           ++ Q KQIHA  ++T                HF     L      F    +P S  WN +
Sbjct: 55  TLEQTKQIHAHIIKT----------------HF--HHALQIPLNDFPSGLSP-SAQWNFV 95

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I +  +    +P+  +     + + +   D    P  LKAC  +     GK+ H  + K+
Sbjct: 96  ITSYTKR--NQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKK 153

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           GL  DV++ N+L+  Y  C  ++ A  VFD M+ER +VSW+ MI +  +  EFD AL+L 
Sbjct: 154 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELI 213

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           R M  +   P      S+ +  A  A + +G   HAY++R+ ++  +  V    +L+DMY
Sbjct: 214 REMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHM-GVPTTTALLDMY 272

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG L +ARQ+F  + ++ + SW ++I G     R E A   FD      + + + + +
Sbjct: 273 AKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFD-----STQNRDVMIW 327

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
             +LSA      + +  + FD M     + P       L+ L A AG +D
Sbjct: 328 TAMLSAYAQANCIDQAFNLFDQM-RTSGVRPTKVTIVSLLSLCAVAGALD 376



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 142/310 (45%), Gaps = 24/310 (7%)

Query: 16  HSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII 75
           H++ I N+N         ++LL    +C  +   +Q     L   L Q  KT++ ++ +I
Sbjct: 248 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQ-----LFNGLTQ--KTVVSWTAMI 300

Query: 76  HFASFAD-LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
                ++ L+ A  +F   +N +   W  ++ A A++ +   QA  LF +M   G V P 
Sbjct: 301 AGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQA-NCIDQAFNLFDQMRTSG-VRPT 358

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           K T    L  CA   A   GK  H++I K  +  D  +N +L+  YA CG ++ A ++F 
Sbjct: 359 KVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFI 418

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC--AGLATL 251
             + R +  WN +I  F   G  + AL +F  M+    +P+  TF  +  AC  AGL T 
Sbjct: 419 EAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTE 478

Query: 252 SLGMW---AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSW 307
              ++    H +        LV  +     ++D+  + G LD A ++ +SMP K +   W
Sbjct: 479 GKKLFEKMVHTF-------GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 531

Query: 308 NSIILGFALH 317
            +++    LH
Sbjct: 532 GALVAACRLH 541



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 38/282 (13%)

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L    Q KQ HAHI K              HF+ +   L +    F + L  S   WN +
Sbjct: 53  LSTLEQTKQIHAHIIK-------------THFHHA---LQIPLNDFPSGLSPS-AQWNFV 95

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I ++ +  +  +AL ++ +++ + FE D +   S+  AC  ++   LG   H ++L+   
Sbjct: 96  ITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK--- 152

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  DV V N+L+ MY +C  ++ AR VF+ M +RD+ SW+++I   + +   + AL+ 
Sbjct: 153 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE- 211

Query: 327 FDRLVVEESF---SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG--- 380
              L+ E +F    P+ +  V +++       +  G+     +I   N     EH G   
Sbjct: 212 ---LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNN----EHMGVPT 264

Query: 381 --CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              L+D+ A+ G++  A  L + +  K   V W +++  C +
Sbjct: 265 TTALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIR 305


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/552 (40%), Positives = 316/552 (57%), Gaps = 49/552 (8%)

Query: 102 NTLIRACARSVDAKPQA-IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ---- 156
           + LIRA A S   +PQA + L+  +I  G + P  HT P  LK+ A   A    ++    
Sbjct: 57  DALIRAHASS--GRPQAALPLYAHLIRAG-LFPTPHTLPSLLKSLALSPAVPGARRLALA 113

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYAS--------------------------------CG 184
            HAH  + GL   + +NN+LI  +A                                  G
Sbjct: 114 VHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAG 173

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            +  A  +FD M ER+ VSW+ M++ +VQ G+   AL +F +MQ     PD      + +
Sbjct: 174 RVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLA 233

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L  G W H Y+     +++   V +  +L+DMY KCG + +  +VFE M  ++
Sbjct: 234 ACAQLGALEQGKWVHGYLK---ANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKN 290

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + +W ++I G A+HGR   +L  F ++       P+ I F+G L AC H G+V +GR+ F
Sbjct: 291 VLAWTTMIKGLAMHGRGSDSLTLFSQME-SSGVKPDDIAFIGALCACTHTGLVDKGRELF 349

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M+N Y I P +EHYGC+VDLLAR G + EA  +V  MPMKPDA+IW +L+ A C+ H 
Sbjct: 350 NSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALM-AGCRFHK 408

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           +V L+E V K  IE E    SG YVLL  +Y+++ R      +R LM +KGV K PGCS+
Sbjct: 409 NVELAEYVIKHWIELEPDK-SGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSN 467

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK-SRGYTPDYSQAAMVDELDDGKQSS 542
           +EI G+ H+F  GD SHP+ K I      ID +++   GY PD  +  ++D  ++  +S+
Sbjct: 468 VEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEV-LLDIEEEEMESA 526

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L  HSE+LAIA  +++ +  MPIR+ KNLRVC+DCH VTKLIS+++  EIIVRDR RFH 
Sbjct: 527 LSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHL 586

Query: 603 FKDGSCSCMDYW 614
           FKDG+CSC DYW
Sbjct: 587 FKDGTCSCKDYW 598



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 18/246 (7%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  +F ++   N+ +W+ ++    ++ D + +A+ +F +M  QG V PD       L AC
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGR-EALGVFSQMQAQG-VRPDDTVLVGVLAAC 235

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L A  QGK  H ++    +   V++  +L+  YA CG + L  +VF+ M ++++++W 
Sbjct: 236 AQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWT 295

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI      G    +L LF +M+    +PD   F     AC     +  G        R 
Sbjct: 296 TMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKG--------RE 347

Query: 265 CDHSLVTDVLVN------NSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALH 317
             +S+V +  +         ++D+  + G L  AR + E MP K D   W +++ G   H
Sbjct: 348 LFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFH 407

Query: 318 GRAEAA 323
              E A
Sbjct: 408 KNVELA 413


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/586 (38%), Positives = 344/586 (58%), Gaps = 17/586 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHK--TLLIYSRIIHFASFADLDYAFRVFYQ 92
           +LL  L +  ++SQ + +HA ++R      HK   L+  + +  +A    L YA RVF  
Sbjct: 234 ALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEA 293

Query: 93  IENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           +   N  TW+ L+     C R +    +A  LF+ M+ QG       +   AL+ACA L 
Sbjct: 294 MAVRNEVTWSALVGGFVLCGRML----EAFSLFKDMLAQGLCFLSPTSVASALRACANLS 349

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               GKQ HA + K GL +D+   NSL+  YA  G +D A  +FD M+ +  VS++ ++ 
Sbjct: 350 DLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVS 409

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            +VQ G+ D A ++FR+MQ    +PD  T  S+  AC+ LA L  G   H  ++      
Sbjct: 410 GYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR---G 466

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           + ++  + N+LIDMY KCG +D++RQ+F+ MP RD+ SWN++I G+ +HG  + A   F 
Sbjct: 467 IASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFL 526

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +   ++  P+ +TF+ ++SAC+H G+V+EG+ +F +M ++Y ITP +EHY  +VDLLAR
Sbjct: 527 DMK-HQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLAR 585

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            G +DEA   +  MP+K D  +W +LL A C+ H ++ L ++V+  +I+  G   +G +V
Sbjct: 586 GGFLDEAYQFIQGMPLKADVRVWGALLGA-CRVHKNIDLGKQVSS-MIQQLGPEGTGNFV 643

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS ++++A R+++   VR +  ++G  K PGCS IEI+G  H F  GD SH Q+ +IY 
Sbjct: 644 LLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQ 703

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD I   +   GY  D S   + D  ++ K+ +L  HSE+LAIA G+L L     I V 
Sbjct: 704 ELDNILVDINKLGYRADTS-FVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVT 762

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH V K ++ +    IIVRD  RFHHFK+G CSC D+W
Sbjct: 763 KNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 164/338 (48%), Gaps = 9/338 (2%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  A  +F QI  P    +N LIRA   S+     A+ L++ +  +    P+ +TFPF
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRA--YSLRGPALALRLYRSLRRRRLPQPNNYTFPF 134

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            LKAC+ L      +  H H  + GL +D++++ +L+  YA C     A  VF  M  R 
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           +V+WN M+  +   G++   +     MQ    P+  T  ++    A    LS G   HAY
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 261 ILRHCD-HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
            +R C  H     VLV  +L+DMY KCG L  A +VFE+M  R+  +W++++ GF L GR
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 320 AEAALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
              A   F  ++ +     SP S+     L AC +   +  G+     ++ +  +   L 
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQ-LHALLAKSGLHTDLT 371

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               L+ + A+AG ID+A  L   M +K D V + +L+
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQMVVK-DTVSYSALV 408


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 314/533 (58%), Gaps = 10/533 (1%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D   ++F  +   +  +WNT+I   AR  +      +   R +   N+ PD  T    L
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNAR--NGLYGETLTMVREMGGANLKPDSFTLSSVL 307

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
              A     S+GK+ H    ++GL ++VY+ +SLI  YA C  +  + +VF  + ER  +
Sbjct: 308 PLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGI 367

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN +I   VQ G FD  LK FR+M +   +P  Y+F SI  ACA L TL LG   H YI
Sbjct: 368 SWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 427

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            R+       ++ + +SL+DMY KCG++  ARQ+F+ M  RD+ SW ++I+G ALHG A 
Sbjct: 428 TRN---GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHAL 484

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A++ F+++  E    PN + F+ VL+AC+H G+V E   YF+ M  ++ I P +EHY  
Sbjct: 485 DAIELFEQMKTE-GIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAA 543

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           + DLL RAG ++EA   +  MP+ P   +W +LL AC + H +V ++E+VA +++E +  
Sbjct: 544 VSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSAC-RVHKNVDMAEKVANRILEVDPK 602

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             +G Y+LL+ +Y++ARRW +    R  +   G+ K P CS IE+    + F AGD SHP
Sbjct: 603 -NTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHP 661

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
             ++I   ++++ E ++  GY PD S+    D  ++ K+  +  HSERLAI  GI+N   
Sbjct: 662 CYEKIREAMEVLMELMEKEGYVPDTSEVHH-DVEEEQKKYLVCSHSERLAIVFGIINTPA 720

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  IRV KNLRVC DCH  TK IS+I   EI+VRD +RFHHFK+G+CSC DYW
Sbjct: 721 GTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 171/399 (42%), Gaps = 44/399 (11%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALR---TALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           +SLL +    KS SQ +Q+HAQ L+   ++L      L IYS I        L  + R+F
Sbjct: 12  NSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHI------NLLHDSLRLF 65

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +  P +  W ++IR C  S     +++  F  M+  G + PD + FP  LKACA L  
Sbjct: 66  NTLHFPPALAWKSVIR-CYTSHGLPHKSLGSFIGMLASG-LYPDHNVFPSVLKACAMLMD 123

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL-------ANKVFDNMLERSLVS 203
            + G+  H +I + GL  D+Y  N+L++ Y+    L         A++V D M ER+   
Sbjct: 124 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERT--- 180

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
                             +  R   +L    G     I +    ++  S    A    + 
Sbjct: 181 ------------------RSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEID 222

Query: 264 HCDHSLVTDVLVNN--SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +   S   ++   N    I       S+D  R++FE MP++DL SWN+II G A +G   
Sbjct: 223 YKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYG 282

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             L    R +   +  P+S T   VL        +S+G++     I +  +   +     
Sbjct: 283 ETLTMV-REMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ-GLDAEVYVASS 340

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           L+D+ A+   + ++ + V  +  + D + W S++  C +
Sbjct: 341 LIDMYAKCTRVVDS-YRVFTLLTERDGISWNSIIAGCVQ 378



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 50/356 (14%)

Query: 152 SQGKQAHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
           SQ +Q HA + K +            I+ + +  H  L  ++F+ +     ++W  +I  
Sbjct: 25  SQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL--RLFNTLHFPPALAWKSVIRC 82

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +   G    +L  F  M      PD   F S+  ACA L  L+LG   H YI+R     L
Sbjct: 83  YTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIR---VGL 139

Query: 270 VTDVLVNNSLIDMYCKCGSLDI-------ARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
             D+   N+L++MY K   L         A QV + M +R  +   + +L     GR  +
Sbjct: 140 DFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVL-VGNQGRKVS 198

Query: 323 AL-----------KYFDRLVVEESFSPNSITFVGVLSACN---------HRGMVSEGRDY 362
            +           + F+  V+E  + P S      + ACN         H   V   R  
Sbjct: 199 DIEAFNYDVSCRSREFEAQVLEIDYKPRS--EYREMEACNLGQQIKDISHSMSVDSVRKI 256

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRSLLDACC 419
           F++M  +  ++     +  ++   AR G   E L +V  M    +KPD+    S+L    
Sbjct: 257 FEMMPEKDLVS-----WNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVL-PLI 310

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV--YASARRWNDVGLVRKLMTDK 473
            ++  +   +E+    I    G+ + VYV  S +  YA   R  D   V  L+T++
Sbjct: 311 AENVDISKGKEIHGCSIRQ--GLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER 364


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 344/581 (59%), Gaps = 14/581 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIE 94
            +S+L +C+++ Q+KQ+HAQ   T +      L++ +++++  A   DL  A  +F ++E
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHD---LIVANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +W+ +I    ++ D + +    F+ +I  G+  PD  + PF +KAC        G
Sbjct: 63  ERDPVSWSVMIGGFVKNGDYE-RCFQTFRELIRAGSK-PDNFSLPFVIKACRDTMGLIMG 120

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H+ + K GL  D ++ ++L+  YA CG +D A ++FD M ++ LV+  VMI  + + 
Sbjct: 121 RLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180

Query: 215 GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G+ + +  LF +M+   F PD     +I +ACA L  ++     H Y+   C      DV
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYV---CARRYSLDV 237

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            +  ++IDMY KCGS+D +R++F+ M ++++ SW+++I  +  HG+   AL+ F  +++ 
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELF-HMMLN 296

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               PN ITF+ +L AC+H G+V +G   F +M   Y + P ++HY C+VDLL RAG +D
Sbjct: 297 SGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLD 356

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           +AL L+ NM ++ D  IW + L AC + H  V L+E+ AK ++  +     G Y+LLS +
Sbjct: 357 QALRLIENMEVEKDEGIWCAFLGAC-RIHRQVDLAEKAAKLLLSLQTQ-NPGHYILLSNI 414

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA+A RW DV  +R LM  + + K PG + IE+D I + F AGD SH ++ +IY  L  +
Sbjct: 415 YANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSL 474

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
            +KL+S GY PD + + + D  ++ K   L  HSE+LAIA G++    G PIR+ KNLRV
Sbjct: 475 SQKLESAGYVPD-TNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRV 533

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH   KL+S I   +IIVRD  RFHHFK+G CSC DYW
Sbjct: 534 CGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/539 (40%), Positives = 327/539 (60%), Gaps = 15/539 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +  F  L+ A ++F Q+   N  +W T+I A ++      +A+ L   M+ + NV P+ +
Sbjct: 106 YVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK-CKIHQKALELLVLML-RDNVRPNVY 163

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L++C      S  +  H  I K GL SDV++ ++LI  +A  G  + A  VFD M
Sbjct: 164 TYSSVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
           +    + WN +I  F Q    D AL+LF+RM+   F  +  T  S+  AC GLA L LGM
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGM 280

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
            AH +I+++       D+++NN+L+DMYCKCGSL+ A +VF  M +RD+ +W+++I G A
Sbjct: 281 QAHVHIVKY-----DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G ++ ALK F+R+       PN IT VGVL AC+H G++ +G  YF  M   Y I PV
Sbjct: 336 QNGYSQEALKLFERMK-SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPV 394

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            EHYGC++DLL +AG +D+A+ L++ M  +PDAV WR+LL A C+   ++VL+E  AK+V
Sbjct: 395 REHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA-CRVQRNMVLAEYAAKKV 453

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           I  +    +G Y LLS +YA++++W+ V  +R  M D+G+ KEPGCS IE++   H F  
Sbjct: 454 IALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFII 512

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SHPQ  ++   L+ +  +L   GY P+ +   + D   +  + SLR HSE+LA+A G
Sbjct: 513 GDNSHPQIVEVSKKLNQLIHRLTGIGYVPE-TNFVLQDLEGEQMEDSLRHHSEKLALAFG 571

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++ L     IR+ KNLR+C DCH   KL S++    I++RD  R+HHF+DG CSC DYW
Sbjct: 572 LMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 13/303 (4%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P+A+     +   G +  D  T+   +K C    A  +G     H++  G    +++ N 
Sbjct: 43  PRAMKAMDSLQSHG-LWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNV 101

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPD 234
           LI+ Y     L+ A+++FD M +R+++SW  MI A+ +      AL+L   M +    P+
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            YT+ S+  +C G++ + +    H  I++     L +DV V ++LID++ K G  + A  
Sbjct: 162 VYTYSSVLRSCNGMSDVRM---LHCGIIK---EGLESDVFVRSALIDVFAKLGEPEDALS 215

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VF+ M   D   WNSII GFA + R++ AL+ F R+     F     T   VL AC    
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM-KRAGFIAEQATLTSVLRACTGLA 274

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           ++  G     V I +Y+   +L +   LVD+  + G++++AL + + M  + D + W ++
Sbjct: 275 LLELGMQAH-VHIVKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQMKER-DVITWSTM 330

Query: 415 LDA 417
           +  
Sbjct: 331 ISG 333


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/585 (40%), Positives = 345/585 (58%), Gaps = 25/585 (4%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR---IIHFA---SFADLDYAFRVFY 91
           S + +C ++S +KQ+ A  L T    Q    +  SR   + H A   S A L YA  +  
Sbjct: 6   SIIQKCTTLSHIKQVQAHLLTTG---QFNLRISPSRTRLLEHCALSPSPAYLPYAAHIHR 62

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            I +P++  +N L+R  AR     P   + F   I    + PD  TF F+L A A   A 
Sbjct: 63  HIPHPSTNDFNALLRGLARG--PHPTHALTFLSTI----LHPDALTFSFSLIASARALAL 116

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           S+  Q H+H+ +RG  +D+ +  +LI  YA CG LD A +VFD +  R + +WN +I   
Sbjct: 117 SETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGL 176

Query: 212 VQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  +   AL LF RM+   E  +  +     +AC+ L  L  G   HA + R  D  L 
Sbjct: 177 AQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACV-RKMD--LD 233

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +V V N++IDMY KCG  D   +VF +M   + + +WN++I+ FA+HG    AL+ F+ 
Sbjct: 234 INVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEE 293

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +  +     +S+T++ VL ACNH G+V EG   FD M+    +   ++HYG +VDLL RA
Sbjct: 294 MG-KTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRA 351

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G + EA  ++++MP+ PD V+W+SLL AC K + +V ++E  +++++E     C G +VL
Sbjct: 352 GRLGEAYRIINSMPIVPDVVLWQSLLGAC-KTYGNVEMAEMASRKLVEMGSNSC-GDFVL 409

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS VYA+  RW DVG VR+ M  + V K PG S IE++G+ H+F  GD SHP  ++IY  
Sbjct: 410 LSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAK 469

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           LD I  ++K+ GY  + S   + D  ++ K+++L  HSE+LA+A G+++   G PIRV K
Sbjct: 470 LDEIRFRIKAFGYVAETS-LVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNK 528

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLR+C DCH V KLIS+I++ EIIVRDRARFH FKDGSCSC DYW
Sbjct: 529 NLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 9/214 (4%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRII 75
           ++FN  R EG   N  S+L +L  C  +  L+    +HA   +  L    +  +  + I 
Sbjct: 187 ALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQ--VCNAVID 244

Query: 76  HFASFADLDYAFRVFYQIENPNS-FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
            +A     D  FRVF  +    S  TWNT+I A A   D   +A+ LF+ M  +  V  D
Sbjct: 245 MYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDG-CRALELFEEM-GKTQVEMD 302

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
             T+   L AC +     +G +    +  RG+  +V    S++      G L  A ++ +
Sbjct: 303 SVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIIN 362

Query: 195 NM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           +M +   +V W  ++ A   +G  + A    R++
Sbjct: 363 SMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKL 396


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/524 (42%), Positives = 313/524 (59%), Gaps = 17/524 (3%)

Query: 97  NSFTWNTLIRACARSV--DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ- 153
           ++F  NTLIRA A S    A+ +A   F  M+     LP+K TFPF LKACA   AF   
Sbjct: 107 DAFLANTLIRAHAASPLPSARLRAASFFPLMLRSAT-LPNKFTFPFLLKACA---AFPGV 162

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCG--HLDLANKVFDNMLERSLVSWNVMIDAF 211
           G QAHA   K G  +D Y++N+LIH Y+  G   L  A  VFD M + S V+W+ MI  +
Sbjct: 163 GVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGY 222

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           V+ G    A+ LFR MQ     PD  T   + +A A L  L L  W   ++ +     + 
Sbjct: 223 VRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKE---GIG 279

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             V + N+LID   KCG LD A  VF+ M +R + SW S+I   A+ GR + A+  F+ +
Sbjct: 280 KSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEM 339

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                  P+ + F+GVL+AC+H GMV EG  YF+ M   Y I P +EHYGC+VD+  RAG
Sbjct: 340 KTA-GVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAG 398

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++ A+  V  MPMKP+ +IWR+L+ A C+ H  + L E + + ++ +E       YV+L
Sbjct: 399 MVERAMEFVHKMPMKPNPIIWRTLV-AACRAHGRLELGETITRNLL-NEYPAHEANYVML 456

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S VYA  RRW +   +R+ M+ +G+ K PGCS +E+DG  HEF AGD SHPQ K+IY  +
Sbjct: 457 SNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMV 516

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + +  +L+  G+    S+  ++D  ++ K+ +L+ HSE+LAIA  +L   PG  +RV KN
Sbjct: 517 EEMARELRRAGHISATSEV-LLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKN 575

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   K IS ++N EIIVRDR+RFH FK+GSCSC D+W
Sbjct: 576 LRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 336/609 (55%), Gaps = 47/609 (7%)

Query: 44  KSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIENPNSF 99
           K+ S+LK +H  ++   +         L I + +I+F  S    D A RVF  +   +  
Sbjct: 181 KAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVV 240

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WN +I A A       +A++LFQ M E  +V P+  T    L ACA       G+   +
Sbjct: 241 SWNAMINAFALG-GLPDKALLLFQEM-EMKDVKPNVITMVSVLSACAKKIDLEFGRWICS 298

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           +I   G    + +NN+++  Y  CG ++ A  +F+ M E+ +VSW  M+D   + G +D 
Sbjct: 299 YIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDE 358

Query: 220 A-------------------------------LKLFRRMQIL--FEPDGYTFQSITSACA 246
           A                               L LF  MQ+    +PD  T      A A
Sbjct: 359 AHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASA 418

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L  +  G W H YI +H    +  +  +  SL+DMY KCG+L+ A +VF ++ ++D+  
Sbjct: 419 QLGAIDFGHWIHVYIKKH---DINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYV 475

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W+++I   A++G+ +AAL  F  ++ E    PN++TF  +L ACNH G+V+EG   F+ M
Sbjct: 476 WSAMIGALAMYGQGKAALDLFSSML-EAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQM 534

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
              Y I P ++HY C+VD+  RAG +++A   +  MP+ P A +W +LL AC  +H +V 
Sbjct: 535 EPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGAC-SRHGNVE 593

Query: 427 LSEEVAKQVIESEGGICS-GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
           L+E   + ++E E   C+ G +VLLS +YA A  W  V  +RKLM D  V KEP CSSI+
Sbjct: 594 LAELAYQNLLELEP--CNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSID 651

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           ++GI HEF  GD SHP +++IY  LD I EK K  GY PD S    + E D+  + SL +
Sbjct: 652 VNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNV 711

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G+++     PIR+ KN+R+C DCH   KL+S++++ +I++RDR RFHHF+ 
Sbjct: 712 HSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRG 771

Query: 606 GSCSCMDYW 614
           G CSC+DYW
Sbjct: 772 GKCSCLDYW 780



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/426 (31%), Positives = 215/426 (50%), Gaps = 44/426 (10%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADL 83
           +G+    +++L  + +C +  QLKQIHA  LRT+    P     LL    I   +S + L
Sbjct: 66  KGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAI---SSCSCL 122

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            YA  VF QI  PN + WNTLIR  A S D   Q+ ++F  M+   +  P+K TFPF  K
Sbjct: 123 IYAKNVFNQIPQPNLYCWNTLIRGYASSSDPT-QSFLIFLHMLHSCSEFPNKFTFPFLFK 181

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A + L     G   H  + K  L SD++I NSLI+FY S G  DLA++VF NM  + +VS
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVS 241

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI+AF   G  D AL LF+ M++   +P+  T  S+ SACA    L  G W  +YI 
Sbjct: 242 WNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIE 301

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS---------------- 306
              ++     +++NN+++DMY KCG ++ A+ +F  M ++D+ S                
Sbjct: 302 ---NNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDE 358

Query: 307 ---------------WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
                          WN++I  +  +G+   AL  F  + + +   P+ +T +  L A  
Sbjct: 359 AHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASA 418

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
             G +  G  +  V I +++I         L+D+ A+ GN+++A+ +   +  K D  +W
Sbjct: 419 QLGAIDFGH-WIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERK-DVYVW 476

Query: 412 RSLLDA 417
            +++ A
Sbjct: 477 SAMIGA 482


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/616 (37%), Positives = 337/616 (54%), Gaps = 46/616 (7%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLL+S    +++++ ++IH+      L  +   ++  + I  +     +  A  +F ++ 
Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGL--ETDMIVANALITMYCKCNSVQEAREIFDRMS 320

Query: 95  NPNSFTWNTLIRACARSVDAKPQAI----VLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +  +W+ +I   A+S     ++I     L +RM  +G V P+K TF   L+AC    A
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREG-VFPNKVTFMSILRACTAHGA 379

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH------------------------- 185
             QG+Q HA + K G   D  +  ++ + YA CG                          
Sbjct: 380 LEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSM 439

Query: 186 ------LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
                 L  A KVF  M  R++VSWN+MI  + Q G+     +L   M+   F+PD  T 
Sbjct: 440 YIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTV 499

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            +I  AC  LA L  G   HA  ++     L +D +V  SLI MY KCG +  AR VF+ 
Sbjct: 500 ITILEACGALAGLERGKLVHAEAVKL---GLESDTVVATSLIGMYSKCGQVAEARTVFDK 556

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           M  RD  +WN+++ G+  HG    A+  F R++ +E  SPN IT   V+SAC+  G+V E
Sbjct: 557 MSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRML-KERVSPNEITLTAVISACSRAGLVQE 615

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           GR+ F +M  ++ +TP  +HYGC+VDLL RAG + EA   + +MP +PD  +W +LL A 
Sbjct: 616 GREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGA- 674

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
           CK H +V L+E  A  ++E E    S VY+ LS +YA A RW+D   VR++M D+G+ K+
Sbjct: 675 CKSHNNVQLAERAAHHILELEPSYAS-VYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKD 733

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            G SSIEIDG  H F A D +HP+   I+  L+ + +++K  GYTPD  +  + D  D  
Sbjct: 734 RGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDM-RFVLHDVDDVQ 792

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K+ +L  HSE+LAIA G+L    G PIR+ KNLRVC DCH  TK IS+I   EI+ RD  
Sbjct: 793 KEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDAN 852

Query: 599 RFHHFKDGSCSCMDYW 614
           RFH+F +G+CSC D+W
Sbjct: 853 RFHYFNNGTCSCGDFW 868



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 222/446 (49%), Gaps = 30/446 (6%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           N +  ++    + +     K +H Q     L  +    L  S I  ++ F D+  A +VF
Sbjct: 57  NTYGCVIEHCAKARRFEDGKMVHKQL--DELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   +  TW+++I A A + +   +A   F+RM +  N+ P++ TF   LKAC     
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGN-NHPAKAFDTFERMTD-ANIEPNRITFLSILKACNNYSI 172

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             +G++ H  +   G+ +DV +  +LI  Y+ CG + +A +VF  M ER++VSW  +I A
Sbjct: 173 LEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA 232

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
             Q  + + A +L+ +M Q    P+  TF S+ ++C     L+ G   H++I    +  L
Sbjct: 233 NAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI---SERGL 289

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG-----RAEAAL 324
            TD++V N+LI MYCKC S+  AR++F+ M KRD+ SW+++I G+A  G       +   
Sbjct: 290 ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVF 349

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLV 383
           +  +R+  E  F PN +TF+ +L AC   G + +GR  + ++    + +   L+    + 
Sbjct: 350 QLLERMRREGVF-PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIF 406

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK----KHASVVLSEEVAKQVIE-- 437
           ++ A+ G+I EA  + S M  K + V W S L    K      A  V SE   + V+   
Sbjct: 407 NMYAKCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWN 465

Query: 438 ------SEGGICSGVYVLLSRVYASA 457
                 ++ G    V+ LLS + A  
Sbjct: 466 LMIAGYAQNGDIVKVFELLSSMKAEG 491



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 200/428 (46%), Gaps = 58/428 (13%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  + LS L  C + S L   ++IH   +  A+  +    +  + I  ++   ++  A  
Sbjct: 156 NRITFLSILKACNNYSILEKGRKIHT--IVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF+++   N  +W  +I+A A+      +A  L+++M++ G + P+  TF   L +C   
Sbjct: 214 VFHKMTERNVVSWTAIIQANAQHRKLN-EAFELYEQMLQAG-ISPNAVTFVSLLNSCNTP 271

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            A ++G++ H+HI +RGL +D+ + N+LI  Y  C  +  A ++FD M +R ++SW+ MI
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 209 DAFVQFG-----EFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
             + Q G       D   +L  RM  + +F P+  TF SI  AC     L  G   HA +
Sbjct: 332 AGYAQSGYKDKESIDEVFQLLERMRREGVF-PNKVTFMSILRACTAHGALEQGRQIHAEL 390

Query: 262 LR---HCDHSLVT-------------------------DVLVNNSLIDMYCKCGSLDIAR 293
            +     D SL T                         +V+   S + MY KCG L  A 
Sbjct: 391 SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL--VVEESFSPNSITFVGVLSACN 351
           +VF  MP R++ SWN +I G+A +G     +K F+ L  +  E F P+ +T + +L AC 
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGD---IVKVFELLSSMKAEGFQPDRVTVITILEACG 507

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAGNIDEALHLVSNMPMKPD 407
               +  G+     +++   +   LE        L+ + ++ G + EA  +   M  + D
Sbjct: 508 ALAGLERGK-----LVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-D 561

Query: 408 AVIWRSLL 415
            V W ++L
Sbjct: 562 TVAWNAML 569



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 10/325 (3%)

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +++ P S +   + R C        +AI L   +I+Q  +L + +T+   ++ CA    F
Sbjct: 16  ELDGPTSVSGGEVWRLC--KAGRLREAIQLLG-IIKQRGLLVNSNTYGCVIEHCAKARRF 72

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GK  H  + + G+  D+Y+ NSLI+FY+    +  A +VF  M  R +V+W+ MI A+
Sbjct: 73  EDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY 132

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                   A   F RM     EP+  TF SI  AC   + L  G   H  +       + 
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKA---MGME 189

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           TDV V  +LI MY KCG + +A +VF  M +R++ SW +II   A H +   A + ++++
Sbjct: 190 TDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQM 249

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
            ++   SPN++TFV +L++CN    ++ GR      I+E  +   +     L+ +  +  
Sbjct: 250 -LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS-HISERGLETDMIVANALITMYCKCN 307

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
           ++ EA  +   M  K D + W +++
Sbjct: 308 SVQEAREIFDRMS-KRDVISWSAMI 331


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 348/591 (58%), Gaps = 21/591 (3%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYA 86
           SF    S+L +++  + +S  K+IH  A+R+       +L+  S  +   +A    L+ A
Sbjct: 235 SFITIVSVLPAVSALRLISVGKEIHGYAMRSGF----DSLVNISTALVDMYAKCGSLETA 290

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
            ++F  +   N  +WN++I A  ++ + K +A+++FQ+M+++G V P   +   AL ACA
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPK-EAMLIFQKMLDEG-VKPTDVSVMGALHACA 348

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            L    +G+  H    + GL  +V + NSLI  Y  C  +D A  +F  +  R+LVSWN 
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408

Query: 207 MIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  F Q G    AL  F +M+    +PD +T+ S+ +A A L+      W H  ++R C
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              L  +V V  +L+DMY KCG++ IAR +F+ M +R +T+WN++I G+  HG  +AAL+
Sbjct: 469 ---LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALE 525

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+ +  + +  PN +TF+ V+SAC+H G+V  G   F +M   Y+I   ++HYG +VDL
Sbjct: 526 LFEEMQ-KGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE--SEGGIC 443
           L RAG ++EA   +  MP+KP   ++ ++L AC + H +V  +E+ A+++ E   + G  
Sbjct: 585 LGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC-QIHKNVNFAEKAAERLFELNPDDG-- 641

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
            G +VLL+ +Y +A  W  VG VR  M  +G+ K PGCS +EI    H FF+G T+HP +
Sbjct: 642 -GYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDS 700

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           K+IY FL+ +   +K  GY PD +    V+  +D K+  L  HSE+LAI+ G+LN   G 
Sbjct: 701 KKIYAFLEKLICHIKEAGYVPDTNLVLGVE--NDVKEQLLSTHSEKLAISFGLLNTTAGT 758

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            I V KNLRVC DCH  TK IS +   EI+VRD  RFHHFK+G+CSC DYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 12/353 (3%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           P  P  H H +   N    +   H + L  L  C S+ +L+QI     +  L Q+H    
Sbjct: 15  PNPPSRHRHFLSERNYIPANVYEHPAALL-LERCSSLKELRQILPLVFKNGLYQEH---F 70

Query: 70  IYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
             ++++  F  +  +D A RVF  I++  +  ++T+++  A+  D   +A+  F RM   
Sbjct: 71  FQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLD-KALQFFVRM-RY 128

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            +V P  + F + LK C        GK+ H  + K G   D++    L + YA C  ++ 
Sbjct: 129 DDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNE 188

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG 247
           A KVFD M ER LVSWN ++  + Q G    AL++ + M +   +P   T  S+  A + 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  +S+G   H Y +R    SLV    ++ +L+DMY KCGSL+ ARQ+F+ M +R++ SW
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVN---ISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           NS+I  +  +   + A+  F ++ ++E   P  ++ +G L AC   G +  GR
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKM-LDEGVKPTDVSVMGALHACADLGDLERGR 357



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 186/368 (50%), Gaps = 12/368 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    ++ A +VF ++   +  +WNT++   +++  A+  A+ + + M E+ N+ P   
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMAR-MALEMVKSMCEE-NLKPSFI 237

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L A + L   S GK+ H +  + G  S V I+ +L+  YA CG L+ A ++FD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
           LER++VSWN MIDA+VQ      A+ +F++M     +P   +      ACA L  L  G 
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           + H       +  L  +V V NSLI MYCKC  +D A  +F  +  R L SWN++ILGFA
Sbjct: 358 FIHKL---SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFA 414

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +GR   AL YF ++    +  P++ T+V V++A     +    +    V++       V
Sbjct: 415 QNGRPIDALNYFSQM-RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV 473

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASVVLSEEVA 432
                 LVD+ A+ G I  A  L+ +M  +     W +++D         A++ L EE+ 
Sbjct: 474 FVTTA-LVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQ 531

Query: 433 KQVIESEG 440
           K  I+  G
Sbjct: 532 KGTIKPNG 539


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/545 (40%), Positives = 323/545 (59%), Gaps = 11/545 (2%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  +A F D+  A  VF ++   +  +WNT+I   A++ D+   A ++F  M + G +
Sbjct: 201 SLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGT-AFLVFDLMGKAG-L 258

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLAN 190
             D  T    L ACA L A  +GK  H +  +  + + + +  NSLI  Y +C  +  A 
Sbjct: 259 FADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDAR 318

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLA 249
           ++F+ +  +  VSWN MI  + + G+   +L+LFRRM +    PD  TF ++  AC  +A
Sbjct: 319 RLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIA 378

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  GM  H+Y+++        + +V  +L+DMY KCGSL  +R+VF+ MP + L SW++
Sbjct: 379 ALRYGMSIHSYLVKK---GFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSA 435

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           ++ G+ LHGR   A+   D +    S  P++  F  +LSAC+H G+V EG++ F  M  E
Sbjct: 436 MVAGYGLHGRGREAISILDGMKAN-SVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKE 494

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           YN+ P L HY C+VDLL RAG++DEA  ++  M +KP + IW +LL A  + H ++ L+E
Sbjct: 495 YNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTAS-RLHKNIKLAE 553

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A++V +    + S  Y+ LS +YA+ +RW+DV  VR ++  KG+ K PGCS IE+D +
Sbjct: 554 ISAQKVFDMNPKVVSS-YICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNM 612

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            H F  GD SH QT+ IY  L+ + ++LK  GY PD S     D  ++ K+  L  HSER
Sbjct: 613 VHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTS-LVFYDVEEEVKEKMLWDHSER 671

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LAIA  ++N  PG  IR+ KNLRVC DCH VTKLIS +   EII+RD  RFHHF  G CS
Sbjct: 672 LAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCS 731

Query: 610 CMDYW 614
           C DYW
Sbjct: 732 CGDYW 736



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 197/384 (51%), Gaps = 11/384 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
            +LL S T  KS  Q +Q+HA  +  ++ + + T L       +A    +  A  +F  I
Sbjct: 63  GALLQSFTNTKSFKQGQQLHAHMISFSILENN-TYLNTKLAAFYAGCGLMSQAEVIFDGI 121

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              NSF WN +IR  A S     +++VL++ M+  G    D  T+PF LKAC  L     
Sbjct: 122 VLKNSFLWNFMIRGYA-SNGLPMKSLVLYREMLCFGQ-RADNFTYPFVLKACGDLLLVEI 179

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G++ H+ +   GL SD+Y+ NSL+  YA  G +  A  VFD M ER L SWN MI  + +
Sbjct: 180 GRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAK 239

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +  +A  +F  M +     D  T   + SACA L  +  G   H Y +R+   +   +
Sbjct: 240 NADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNY--N 297

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
               NSLI+MYC C  +  AR++FE +  +D  SWNS+ILG+A +G A  +L+ F R+ +
Sbjct: 298 KFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMAL 357

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGN 391
           + S  P+ +TF+ VL AC+    +  G      ++ + ++   ++     LVD+ ++ G+
Sbjct: 358 DGS-GPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGT--ALVDMYSKCGS 414

Query: 392 IDEALHLVSNMPMKPDAVIWRSLL 415
           +  +  +   MP K   V W +++
Sbjct: 415 LACSRRVFDEMPDKS-LVSWSAMV 437


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 342/616 (55%), Gaps = 15/616 (2%)

Query: 3   VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRT 59
           V +V  G     + S+ IF   + EG   N  +  S L  C S+  L   +QIH Q +++
Sbjct: 385 VMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS 444

Query: 60  ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
               Q    +    I  +A   +LD A  +  ++   +  +W  +I    +  D   +A+
Sbjct: 445 GF--QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQH-DLFAEAL 501

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
            LFQ M  QG +  D   F  A+ ACA + A +QG+Q HA  +  G   D+ I N+L+  
Sbjct: 502 KLFQEMENQG-IRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSL 560

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
           YA CG    A   F+ +  +  +SWN +I  F Q G  + AL++F +M Q   E + +TF
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S  SA A  A +  G   HA +++    S   +   +N LI +Y KCGS++ A++ F  
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMIKTGYDS---ETEASNVLITLYSKCGSIEDAKREFFE 677

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           MP++++ SWN++I G++ HG    A+  F+ +  +    PN +TFVGVLSAC+H G+V+E
Sbjct: 678 MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMK-QLGLMPNHVTFVGVLSACSHVGLVNE 736

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G  YF  M  E+ + P  EHY C+VDLL RA  +  A   +  MP++PDA+IWR+LL AC
Sbjct: 737 GLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSAC 796

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
              H ++ + E  A+ ++E E    S  YVLLS +YA + +W+     R++M D+GV KE
Sbjct: 797 -TVHKNIEIGEFAARHLLELEPED-SATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKE 854

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
           PG S IE+    H FF GD  HP  +QIY ++D ++E+    GY  D     + D   + 
Sbjct: 855 PGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNL-LNDVEQEQ 913

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K  +  +HSE+LA+A G+L+L   MPIRV KNLRVC DCH   K +S+I N  I+VRD  
Sbjct: 914 KDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAY 973

Query: 599 RFHHFKDGSCSCMDYW 614
           RFHHF+ G CSC DYW
Sbjct: 974 RFHHFEGGVCSCKDYW 989



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 217/446 (48%), Gaps = 37/446 (8%)

Query: 22  NNNRNEGSFNNHSSLLSSLTECKSMSQL-KQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
           N   +E +F   +S+L + +  K+  Q+ +QIHA+ +          L+    I  ++  
Sbjct: 106 NVTPDESTF---ASVLRACSGGKAPFQVTEQIHAKIIHHGFGS--SPLVCNPLIDLYSKN 160

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             +D A  VF ++   +S +W  +I   +++   + +AI+LF +M  +  V+P  + F  
Sbjct: 161 GHVDLAKLVFERLFLKDSVSWVAMISGLSQN-GREDEAILLFCQM-HKSAVIPTPYVFSS 218

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC  +  F  G+Q H  I K GL S+ ++ N+L+  Y+  G+L  A ++F  M  R 
Sbjct: 219 VLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRD 278

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHA 259
            +S+N +I    Q G  D AL+LF +MQ+   +PD  T  S+ SACA +     G   H+
Sbjct: 279 RISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHS 338

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           Y+++     + +D+++  SL+D+Y KC  ++ A + F +    ++  WN +++ +   G 
Sbjct: 339 YVIK---MGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGN 395

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITPVL 376
              +   F ++ + E   PN  T+  +L  C   G +  G      +I    ++N+    
Sbjct: 396 LSESYWIFLQMQI-EGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV---- 450

Query: 377 EHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH----ASVVLSEE 430
             Y C  L+D+ A+ G +D A  ++  +  + D V W +++ A   +H     ++ L +E
Sbjct: 451 --YVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMI-AGYTQHDLFAEALKLFQE 506

Query: 431 VAKQVIESEG-------GICSGVYVL 449
           +  Q I S+          C+G+  L
Sbjct: 507 MENQGIRSDNIGFSSAISACAGIQAL 532



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 145/331 (43%), Gaps = 45/331 (13%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E+  +  +  T+ +  + C    +    K+ HA IFK G   +  + + LI  Y + G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSA 244
           +D A K+FD++   ++  WN +I   +        L LF  M      PD  TF S+  A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 245 CA-GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           C+ G A   +    HA I+    H   +  LV N LID+Y K G +D+A+ VFE +  +D
Sbjct: 121 CSGGKAPFQVTEQIHAKIIH---HGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKD 177

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             SW ++I G + +GR + A+  F ++  + +  P    F  VLSAC    +   G    
Sbjct: 178 SVSWVAMISGLSQNGREDEAILLFCQM-HKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236

Query: 364 DVMINEYNITPVLEHYGC--LVDLLARAGNI----------------------------- 392
             ++ ++ ++   E + C  LV L +R GN+                             
Sbjct: 237 GFIV-KWGLSS--ETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRG 293

Query: 393 --DEALHLVSNMP---MKPDAVIWRSLLDAC 418
             D AL L   M    MKPD V   SLL AC
Sbjct: 294 FSDRALQLFEKMQLDCMKPDCVTVASLLSAC 324


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 347/610 (56%), Gaps = 30/610 (4%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           F++ R    +   SS   ++  C S+  +   KQ H QA       Q    +  + I+ +
Sbjct: 64  FSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF--VFGYQSDIFVSSALIVMY 121

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN-----VL 132
           ++   L+ A +VF +I   +  +W ++IR    + +A   A+ LF+ ++   N     + 
Sbjct: 122 STCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNA-LDAVSLFKDLLVDENDDDDAMF 180

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH--LDLAN 190
            D       + AC+ + A    +  H+ + KRG    V + N+L+  YA  G   + +A 
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           K+FD ++++  VS+N ++  + Q G  + A ++FRR   L +    TF +IT +   LA 
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRR---LVKNKVVTFNAITLSTVLLAV 297

Query: 251 -----LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
                L +G   H  ++R     L  DV+V  S+IDMYCKCG ++ AR+ F+ M  +++ 
Sbjct: 298 SHSGALRIGKCIHDQVIRM---GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SW ++I G+ +HG A  AL+ F  ++ +    PN ITFV VL+AC+H G+  EG  +F+ 
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMI-DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNA 413

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M   + + P LEHYGC+VDLL RAG + +A  L+  M MKPD++IW SLL A C+ H +V
Sbjct: 414 MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLL-AACRIHKNV 472

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L+E    ++ E +   C G Y+LLS +YA A RW DV  VR +M ++G+ K PG S +E
Sbjct: 473 ELAEISVARLFELDSSNC-GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLE 531

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLR 544
           ++G  H F  GD  HPQ ++IY FL  ++ KL   GY  + S     VDE  + K+ +LR
Sbjct: 532 LNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE--EEKEMTLR 589

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
           +HSE+LAIA GI+N  PG  + V KNLRVC DCH V KLIS+I + E +VRD  RFHHFK
Sbjct: 590 VHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFK 649

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 650 DGGCSCGDYW 659



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 177/345 (51%), Gaps = 18/345 (5%)

Query: 72  SRIIHFASFADLDYAFRVFYQ-IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
           SR++H     +      +F + ++  + F+WN++I   ARS D+  +A++ F  M  + +
Sbjct: 14  SRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEALLAFSSM-RKLS 71

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           + P + +FP A+KAC+ LF    GKQ H   F  G  SD++++++LI  Y++CG L+ A 
Sbjct: 72  LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDAR 131

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--------LFEPDGYTFQSIT 242
           KVFD + +R +VSW  MI  +   G    A+ LF+ + +        +F  D     S+ 
Sbjct: 132 KVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF-LDSMGLVSVI 190

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC--GSLDIARQVFESMP 300
           SAC+ +    L    H+++++         V V N+L+D Y K   G + +AR++F+ + 
Sbjct: 191 SACSRVPAKGLTESIHSFVIK---RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            +D  S+NSI+  +A  G +  A + F RLV  +  + N+IT   VL A +H G +  G+
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
              D +I       V+     ++D+  + G ++ A      M  K
Sbjct: 308 CIHDQVIRMGLEDDVIVGTS-IIDMYCKCGRVETARKAFDRMKNK 351


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/529 (40%), Positives = 319/529 (60%), Gaps = 15/529 (2%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F  +++    +WN++I    +S DA+  A+++FQ+M+++G V P   T   AL ACA L
Sbjct: 188 IFDGMDHRTVVSWNSMIDGYVQSGDAE-GAMLIFQKMLDEG-VQPTNVTVMGALHACADL 245

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +GK  H  + +  L SDV + NSLI  Y+ C  +D+A  +F N+  ++LVSWN MI
Sbjct: 246 GDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMI 305

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G  + AL  F  MQ    +PD +T  S+  A A L+      W H  ++R    
Sbjct: 306 LGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF-- 363

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L  +V V  +L+DMY KCG++  AR++F+ M  R + +WN++I G+  HG  + +++ F
Sbjct: 364 -LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELF 422

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +  + +  PN ITF+  LSAC+H G+V EG  +F+ M  +Y I P ++HYG +VDLL 
Sbjct: 423 KEMK-KGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLG 481

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSG 445
           RAG +++A   +  MP+KP   ++ ++L AC K H +V L E+ A ++  +  + G   G
Sbjct: 482 RAGRLNQAWDFIQKMPIKPGITVYGAMLGAC-KIHKNVDLGEKAAFEIFKLNPDDG---G 537

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            +VLL+ +YA+A  W  V  VR +M   G+ K PGCS +EI    H F++G TSHPQ+K+
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKK 597

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           IY +L+ + +++++ GY PD +  ++ D  DD K   L  HSE+LAIA G+LN   G PI
Sbjct: 598 IYSYLETLVDEIRAAGYVPDTN--SIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPI 655

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + KNLRVC DCH  TK IS +   EIIVRD  RFH FKDG CSC DYW
Sbjct: 656 HIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 199/411 (48%), Gaps = 16/411 (3%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           N + LL    +   + + K+IH   + +        L   + +++ +A    ++ A+ +F
Sbjct: 32  NFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWN---LFAMTGVVNMYAKCRQINDAYNMF 88

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   +   WNT+I   A++  AK  A++L  RM E+G+  PD  T    L A A    
Sbjct: 89  DRMPERDLVCWNTMISGYAQNGFAKV-ALMLVLRMSEEGH-RPDSITIVSILPAVADTRL 146

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G   H ++ + G  S V ++ +L+  Y+ CG + +A  +FD M  R++VSWN MID 
Sbjct: 147 LRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDG 206

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +VQ G+ + A+ +F++M     +P   T      ACA L  L  G + H  + +     L
Sbjct: 207 YVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQ---LKL 263

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +DV V NSLI MY KC  +DIA  +F+++  + L SWN++ILG+A +G    AL  F  
Sbjct: 264 DSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCE 323

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +    +  P+S T V V+ A     +  + +    ++I  +    V      LVD+ A+ 
Sbjct: 324 M-QSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFV-MTALVDMYAKC 381

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCK---KHASVVLSEEVAKQVIE 437
           G I  A  L   M  +   + W +++D          SV L +E+ K  I+
Sbjct: 382 GAIHTARKLFDMMNAR-HVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIK 431



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 152/299 (50%), Gaps = 8/299 (2%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+  F RM +  +V P  + F + LK C       +GK+ H  +   G   +++    ++
Sbjct: 14  ALSFFSRM-KHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVV 72

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGY 236
           + YA C  ++ A  +FD M ER LV WN MI  + Q G    AL L  RM +    PD  
Sbjct: 73  NMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSI 132

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T  SI  A A    L +GM  H Y+LR    SLV    V+ +L+DMY KCGS+ IAR +F
Sbjct: 133 TIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVN---VSTALVDMYSKCGSVSIARVIF 189

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           + M  R + SWNS+I G+   G AE A+  F ++ ++E   P ++T +G L AC   G +
Sbjct: 190 DGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKM-LDEGVQPTNVTVMGALHACADLGDL 248

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             G+ +   ++++  +   +     L+ + ++   +D A  +  N+  K   V W +++
Sbjct: 249 ERGK-FVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT-LVSWNAMI 305



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 23/220 (10%)

Query: 207 MIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           M+  + +    DSAL  F RM+     P  Y F  +   C   + L  G   H  ++   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVIT-- 58

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 ++     +++MY KC  ++ A  +F+ MP+RDL  WN++I G+A +G A+ AL 
Sbjct: 59  -SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALM 117

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHR-----GMVSEG---RDYFDVMINEYNITPVLE 377
              R+  EE   P+SIT V +L A         GM   G   R  F+ ++N         
Sbjct: 118 LVLRM-SEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVST------ 170

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               LVD+ ++ G++  A  +   M  +   V W S++D 
Sbjct: 171 ---ALVDMYSKCGSVSIARVIFDGMDHRT-VVSWNSMIDG 206


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 343/607 (56%), Gaps = 24/607 (3%)

Query: 21   FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH- 76
            F++ R  G     SS   ++  C ++  L   +  H QA           L + S +I  
Sbjct: 1130 FSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGF---ETDLFVSSALIDM 1186

Query: 77   FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            ++    L  A  +F +I   N  +W ++I    ++  A   A++LF+  +E+   + D +
Sbjct: 1187 YSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD-NALLLFKDFLEEETEVEDGN 1245

Query: 137  TFPF-------ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
              P         L AC+ +      +  H  + K+G    + + N+L+  YA CG   ++
Sbjct: 1246 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 1305

Query: 190  NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAG 247
             KVFD M E+  +SWN MI  + Q G    AL++F  M   +    +  T  ++  ACA 
Sbjct: 1306 KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAH 1365

Query: 248  LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
               L  G   H  +++     L  +V V  S+IDMYCKCG +++A++ F+ M ++++ SW
Sbjct: 1366 AGALRAGKCIHDQVIKM---DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSW 1422

Query: 308  NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
             +++ G+ +HGRA+ AL  F ++V      PN ITFV VL+AC+H G+V EG  +F+ M 
Sbjct: 1423 TAMVAGYGMHGRAKEALDIFYKMV-RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 1481

Query: 368  NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            ++Y+I P +EHYGC+VDL  RAG ++EA +L+  M MKPD V+W SLL AC + H +V L
Sbjct: 1482 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC-RIHKNVDL 1540

Query: 428  SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
             E  A+++ E +   C G YVLLS +YA A RW DV  +R LM ++ + K PG S +E+ 
Sbjct: 1541 GEIAAQKLFELDPDNC-GYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 1599

Query: 488  GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
            G  H F  GD  HP  + IY +L+ +  +L+  GY P+ + + + D  ++ K+  LR+HS
Sbjct: 1600 GRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMT-SVLHDVDEEEKEIILRVHS 1658

Query: 548  ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
            E+LA+A G++N  PG  I + KNLRVC DCH V KLIS++ + + +VRD  RFHHFKDG 
Sbjct: 1659 EKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGV 1718

Query: 608  CSCMDYW 614
            CSC DYW
Sbjct: 1719 CSCGDYW 1725



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 46/392 (11%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNS 98
           L  CK+   L+QIHA+ +R+ L       L+  ++IH +++   + YA  +FYQI+NP +
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQ---LLTRKLIHLYSTHGRIAYAILLFYQIQNPCT 90

Query: 99  FTWNTLIRACARSVDA-KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           FTWN +IRA   +++    QA++L++ M+ QG +  DK TFPF +KAC    +   GK  
Sbjct: 91  FTWNLIIRA--NTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVV 147

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  + K G   DV++ N+LI FY  CGH   A KVF+ M  R++VSW  +I   +  G+ 
Sbjct: 148 HGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 218 -------------------------------DSALKLFRRMQI--LFEPDGYTFQSITSA 244
                                          + AL+LF+RMQ   +F P+ YT  S+  A
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF-PNEYTMVSLIKA 266

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  +  L+LG   H Y +++C   +   V +  +LIDMY KCGS+  A +VFE+MP++ L
Sbjct: 267 CTEMGILTLGRGIHDYAIKNC---IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 323

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +WNS+I    +HG  + AL  F  +    +  P++ITF+GVL AC H   V EG  YF 
Sbjct: 324 PTWNSMITSLGVHGLGQEALNLFSEME-RVNVKPDAITFIGVLCACVHIKNVKEGCAYFT 382

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            M   Y I P+ EHY C+ +L AR+ N+DEA 
Sbjct: 383 RMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 148/326 (45%), Gaps = 45/326 (13%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +  +GN+   K  F   L+ C     F   +Q HA I + GL +D  +   LIH Y++ G
Sbjct: 19  LTPRGNIRAKKALF--LLQNCK---NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG 73

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            +  A  +F  +      +WN++I A    G  + AL L++ M       D +TF  +  
Sbjct: 74  RIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIK 133

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG---------------- 287
           AC    ++ LG   H  ++++       DV V N+LID Y KCG                
Sbjct: 134 ACTNFLSIDLGKVVHGSLIKY---GFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRN 190

Query: 288 ---------------SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
                           L  AR++F+ +P +++ SW ++I G+  + + E AL+ F R+  
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDLLARAGN 391
           E  F PN  T V ++ AC   G+++ GR   D  I   N   +  + G  L+D+ ++ G+
Sbjct: 251 ENIF-PNEYTMVSLIKACTEMGILTLGRGIHDYAIK--NCIEIGVYLGTALIDMYSKCGS 307

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDA 417
           I +A+ +   MP K     W S++ +
Sbjct: 308 IKDAIEVFETMPRK-SLPTWNSMITS 332


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 335/574 (58%), Gaps = 33/574 (5%)

Query: 8   GGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKT 67
            G  TP TH            +  +  +LL       S++ +KQ+HA+ALR  +P  H  
Sbjct: 5   AGGRTPSTHP-----------ALRHCVALLRLHLAAPSLATVKQLHARALRAGVPPAHP- 52

Query: 68  LLIYSRIIHFASF--ADLDYAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQ-AIVLFQ 123
           LL    + H AS     L YA  V  ++  +P+ F+ NT++R  A S  ++P  A+ L  
Sbjct: 53  LLAKHLLFHLASLRAPPLRYAVAVLTRVLPDPDPFSLNTVLRIAASS--SRPSLALALHA 110

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
           R +      PD HT+P  L+ACA L +   G++ HA   K GL + V++ NSL+H Y +C
Sbjct: 111 RRLAP----PDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGAC 166

Query: 184 GHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
           G  + A++VFD +   ER+LVSWN M++ F   G  +  L +FR M  + F PDG+T  S
Sbjct: 167 GLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVS 226

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM- 299
           + +A A +  L+LG   H Y+ +     LV +  V N+LID+Y KCG ++ AR+VFE M 
Sbjct: 227 VLTASAEIGALALGRRVHVYLTKV---GLVENSHVGNALIDLYAKCGGVEDARRVFEEMG 283

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
            +R + SW S+I+G A++G  + AL+ F  ++  E   P  IT VGVL AC+H G+V +G
Sbjct: 284 ARRTVVSWTSLIVGLAVNGFGKEALELFG-IMEREKLVPTEITMVGVLYACSHCGLVDDG 342

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
             YF+ M  EYNI P +EH GC+VDLL RAG + EA   +  MP++P+AV+WR+LL AC 
Sbjct: 343 FMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACA 402

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
             H  + L E    +++E + G  SG YVLLS +YA+  RW DV ++RK M   GV K P
Sbjct: 403 -MHKKLELGEAAWARLVELDPG-HSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNP 460

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           G S +E+    +EF  GD SHP+++QIY  L  + + L+  GY P  S   + D  ++ K
Sbjct: 461 GRSLVELRNSVYEFVMGDRSHPESEQIYQMLAEVADSLRREGYIPRTSN-VLADIEEEEK 519

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
           +++L  HSERLAIA  +L   PG PIR+ KNLR+
Sbjct: 520 ETALNYHSERLAIAFALLKSLPGTPIRIVKNLRL 553


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 340/582 (58%), Gaps = 10/582 (1%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLL  L +  ++ Q   +HA  LR  L Q  + +LI + ++  +A    L YA RVF+ +
Sbjct: 206 SLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGM 265

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N  TW+ LI       D   +A  LF+ M+ +G       +   AL+ CA L     
Sbjct: 266 TVRNEVTWSALIGGFVL-CDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRM 324

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q HA + K G+ +D+   NSL+  YA  G ++ A  +FD +  +  +S+  ++  +VQ
Sbjct: 325 GTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQ 384

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+ + A  +F++MQ    +PD  T  S+  AC+ LA L  G  +H  ++      L  +
Sbjct: 385 NGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVI---IRGLALE 441

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + NSLIDMY KCG +D++RQVF+ MP RD+ SWN++I G+ +HG  + A   F  +  
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMK- 500

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            + F P+ +TF+ +++AC+H G+V+EG+ +FD M ++Y I P +EHY C+VDLLAR G +
Sbjct: 501 NQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFL 560

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           DEA   + +MP+K D  +W +LL A C+ H ++ L ++V++ +I+  G   +G +VLLS 
Sbjct: 561 DEAYQFIQSMPLKADVRVWGALLGA-CRIHKNIDLGKQVSR-MIQKLGPEGTGNFVLLSN 618

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           ++++A R+++   VR +   KG  K PGCS IEI+G  H F  GD SHP +  IY  LD 
Sbjct: 619 IFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDN 678

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           I   +K  GY  D S   + D  ++ K+ +L  HSE+LAIA G+L+L     I V KNLR
Sbjct: 679 ILIDIKKLGYQADTS-FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLR 737

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   K ++ + N  IIVRD  RFHHFK+G CSC D+W
Sbjct: 738 VCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 154/339 (45%), Gaps = 6/339 (1%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             L  A +VF +I  P++  +N LIRA   S      A +   R +    V P+K+TFPF
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRA--YSWRGPFHAAIDLYRSMLYFRVPPNKYTFPF 104

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            LKAC+ L     G+  HAH    GL +D++++ +LI  Y  C     A  VF  M  R 
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAH 258
           +V+WN M+  +   G +  A+     MQ      P+  T  S+    A    L  G   H
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           AY LR         VL+  +L+DMY KC  L  A +VF  M  R+  +W+++I GF L  
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
           R   A   F  ++VE     ++ +    L  C     +  G      ++ +  I   L  
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTA 343

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              L+ + A+AG I+EA  L   + +K D + + +LL  
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSG 381


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 351/639 (54%), Gaps = 46/639 (7%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHS--SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
           PTP+       +  RN    +  S   LL ++++  +++   +IH  A +      H   
Sbjct: 94  PTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGF--FHADP 151

Query: 69  LIYSRII-HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            I S +I  +A+   +  A  +F ++ + +  TWN +I   +++       + L++ M  
Sbjct: 152 FIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYD-HVLKLYEEMKT 210

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
            G   PD       L ACA+    S GK  H  I   G     +I  SL++ YA+CG + 
Sbjct: 211 SGTE-PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMH 269

Query: 188 LANKV-------------------------------FDNMLERSLVSWNVMIDAFVQFGE 216
           LA +V                               FD M+E+ LV W+ MI  + +  +
Sbjct: 270 LAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQ 329

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              AL+LF  MQ     PD  T  S+ SACA +  L    W H Y  ++        + +
Sbjct: 330 PLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKN---GFGRTLPI 386

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           NN+LIDMY KCG+L  AR+VFE+MP++++ SW+S+I  FA+HG A++A+  F R+  E++
Sbjct: 387 NNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMK-EQN 445

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PN +TF+GVL AC+H G+V EG+ +F  MINE+ I+P  EHYGC+VDL  RA ++ +A
Sbjct: 446 IEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKA 505

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           + L+  MP  P+ +IW SL+ A C+ H  + L E  A +++E E     G  V+LS +YA
Sbjct: 506 MELIETMPFPPNVIIWGSLMSA-CQNHGEIELGEFAATRLLELEPD-HDGALVVLSNIYA 563

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
             +RW+DVGLVRKLM  KGV+KE  CS IE++   H F   D  H Q+ +IY  LD +  
Sbjct: 564 KEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVS 623

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           +LK  GYTP  S   +VD  ++ K+  +  HSE+LA+  G++  +    IR+ KNLR+C+
Sbjct: 624 QLKLVGYTPSTS-GILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICE 682

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   KL+S++  +EI++RDR RFHHF  G CSC DYW
Sbjct: 683 DCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 210/445 (47%), Gaps = 45/445 (10%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF---ASFADLDYAFRVFYQIENP 96
           L  CK++  +KQIHAQ LR+ +   +  LL            S + LDYA  +F  I NP
Sbjct: 19  LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNP 78

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
            +   N L+R  +R     P+  +     + +     D+ +FP  LKA + L A + G +
Sbjct: 79  PTRFSNQLLRQFSRG--PTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLE 136

Query: 157 AHAHIFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
            H    K G   +D +I ++LI  YA+CG +  A  +FD M  R +V+WN+MID + Q  
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            +D  LKL+  M+    EPD     ++ SACA    LS G   H +I    D+       
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIK---DNGFRVGSH 253

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE- 333
           +  SL++MY  CG++ +AR+V++ +P + +    +++ G+A  G  + A   FDR+V + 
Sbjct: 254 IQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKD 313

Query: 334 ------------ESFS-----------------PNSITFVGVLSACNHRGMVSEGRDYFD 364
                       ES+                  P+ IT + V+SAC + G + + + +  
Sbjct: 314 LVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAK-WIH 372

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KK 421
              ++      L     L+D+ A+ GN+ +A  +  NMP K + + W S+++A       
Sbjct: 373 TYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAFAMHGDA 431

Query: 422 HASVVLSEEVAKQVIESEGGICSGV 446
            +++ L   + +Q IE  G    GV
Sbjct: 432 DSAIALFHRMKEQNIEPNGVTFIGV 456


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/645 (36%), Positives = 342/645 (53%), Gaps = 78/645 (12%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           L+  ++CKS+  +KQI A   +T L   P     LL++  +    S   L YA R+F  I
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDS---LHYARRLFLDI 65

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            NP+ F +NTLIR  + S D    A+ LF  M  +   LPD  +F F LKA A   A + 
Sbjct: 66  RNPDVFMYNTLIRGLSDS-DTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTN 124

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--------------- 198
           G Q H      GL S +++  +LI  YA C  L  A KVFD M+E               
Sbjct: 125 GLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFR 184

Query: 199 ----------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL------------ 230
                           R+L SWN+M+  + + GE   A ++F +M +             
Sbjct: 185 CEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGF 244

Query: 231 --------------------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                                 P+  +   + SACA       G   H ++ +      +
Sbjct: 245 AHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKS---GFL 301

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             + VNN+LID Y KCG+LD+AR VF++M +R   SW ++I G A+HG  E A++ F+ +
Sbjct: 302 QIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEM 361

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             E +  P+SITF+ +L AC+H G+V  G  YF  M+N Y I PV+EHYGC+VDL  RAG
Sbjct: 362 E-ESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAG 420

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            + +A   V  MP+ P+ ++WR+LL AC   H ++ L+ +V +Q+ E +    SG +VLL
Sbjct: 421 KLQQAYDFVCQMPISPNDIVWRTLLGAC-SIHGNLYLAGQVKRQLSELDPE-NSGDHVLL 478

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA A +W DV  +R+ MT + + K PG S IE++ I + F AG+  +    + +  L
Sbjct: 479 SNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKL 538

Query: 511 DLIDEKLK-SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
             I  +L+   GY P+        E+++ K+ S+  HSE+LA+A G+  L  G  IRV K
Sbjct: 539 REIMSRLRIEGGYVPEVGSVLHDIEVEE-KEDSVSQHSEKLAVAFGMAKLPRGRAIRVVK 597

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLR+C+DCH V KLIS+++ VEI+VRDR+RFH F  GSCSC DYW
Sbjct: 598 NLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 342/577 (59%), Gaps = 25/577 (4%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIENPNSFTWNTL 104
           + +L+Q HA  + T     H++  + ++++  +  A  + Y  R+F  + +P+SF +N+L
Sbjct: 23  LRRLQQAHAHLVVTGC---HRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSL 79

Query: 105 IRACAR---SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           I+A ++   S+DA     VLF R +    ++P  +TF   +KACA L     G   H+H+
Sbjct: 80  IKASSKFGFSLDA-----VLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHV 134

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
           F  G  SD ++  +LI FYA      +A KVFD M +RS+V+WN MI  + Q G  + A+
Sbjct: 135 FVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAV 194

Query: 222 KLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           ++F +M +   EPD  TF S+ SAC+ L +L  G W H  I+      +  +V++  SL+
Sbjct: 195 EVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIV---GSGITMNVVLATSLV 251

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           +M+ +CG +  AR VF SM + ++  W ++I G+ +HG    A++ F R+       PNS
Sbjct: 252 NMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKAR-GVVPNS 310

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +TFV VLSAC H G++ EGR  F  M  EY + P +EH+ C+VD+  R G ++EA   V 
Sbjct: 311 VTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVK 370

Query: 401 NM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
            +    + P   +W ++L AC K H +  L  EVA+ +I +E     G YVLLS +YA A
Sbjct: 371 GLNSDELVP--AVWTAMLGAC-KMHKNFDLGVEVAENLINAEPE-NPGHYVLLSNMYALA 426

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            R + V  VR +M  +G+ K+ G S+I++D  ++ F  GD SHP+T +IY FLD +  + 
Sbjct: 427 GRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRC 486

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           K  GY P   ++AM +   + ++ +LR HSE+LA+A G++    G+ +R+ KNLR+C+DC
Sbjct: 487 KDAGYAP-VPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDC 545

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H   K IS + N EIIVRD+ RFHHF++GSCSC DYW
Sbjct: 546 HSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 341/620 (55%), Gaps = 27/620 (4%)

Query: 4    AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTA 60
            A+VQ G P     + S+F   +N+    N  +L+S L  C  +S LK    IH   ++  
Sbjct: 404  ALVQTGYPE---EALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD 460

Query: 61   LPQQHKT----LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
            +     T    + +Y++   F +      A   F ++ + +  TWN+LI   A+  D   
Sbjct: 461  MDSDLSTGTALVSMYAKCGFFTA------ALTTFNRMSSRDIVTWNSLINGYAQIGDPY- 513

Query: 117  QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
             AI +F ++     + PD  T    + ACA L    QG   H  I K G  SD ++ N+L
Sbjct: 514  NAIDMFYKL-RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNAL 572

Query: 177  IHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
            I  YA CG L  A  +F+     +  V+WNV+I A++Q G    A+  F +M++  F P+
Sbjct: 573  IDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPN 632

Query: 235  GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
              TF S+  A A LA    GM  HA I++      +++ LV NSLIDMY KCG L  + +
Sbjct: 633  SVTFVSVLPAAAYLAAFREGMAFHACIIQM---GFLSNTLVGNSLIDMYAKCGQLXYSEK 689

Query: 295  VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
            +F  M  +D  SWN+++ G+A+HG  + A+  F  L+ E     +S++FV VLSAC H G
Sbjct: 690  LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS-LMQESQVQIDSVSFVSVLSACRHXG 748

Query: 355  MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
            +V EGR  F  M ++Y+I P LEHY C+VDLL RAG  DE L  +  MP++PDA +W +L
Sbjct: 749  LVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGAL 808

Query: 415  LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
            L +C + H++V L E     +++ E       +V+LS +YA + RW D G  R  M D G
Sbjct: 809  LGSC-RMHSNVKLGEVALDHLVKLEPR-NPAHFVVLSSIYAQSGRWADAGKARSKMNDLG 866

Query: 475  VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
            + K PGCS +E+    H F  GD SHPQ + ++   + + EK++  GY PD S      E
Sbjct: 867  LKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVE 926

Query: 535  LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
             +D K+  L  HSERLAI   +LN  PG  I++ KNLRVC DCH  TK IS+I    IIV
Sbjct: 927  EED-KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIV 985

Query: 595  RDRARFHHFKDGSCSCMDYW 614
            RD  RFHHF+DG CSC DYW
Sbjct: 986  RDATRFHHFEDGICSCNDYW 1005



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 200/424 (47%), Gaps = 45/424 (10%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++ N+      L+ CK ++ L QIHAQ + +     H    I   I  ++ F   D A  
Sbjct: 28  TYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHS---ITHLINLYSLFHKCDLARS 84

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF    NP+   WN++IRA  RS     +A+ ++  M+E+G + PDK+TF F LKAC   
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYN-EALEMYYCMVEKG-LEPDKYTFTFVLKACTGA 142

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +G   H  I +RGL  DV+I   L+  Y+  G L  A +VFD M +R +V+WN MI
Sbjct: 143 LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 202

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
               Q  +   A+  FR MQ++  EP   +  ++      L+ + L    H Y+ R  D 
Sbjct: 203 AGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR-DF 261

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           S      V+N LID+Y KCG +D+AR+VF+ M  +D  SW +++ G+A +G     L+ F
Sbjct: 262 SSA----VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 317

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE------YNITPVLEHYG- 380
           D++ +  +   N ++ V    A      + +G++     + +         TP++  Y  
Sbjct: 318 DKMKL-GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376

Query: 381 -----------------------CLVDLLARAGNIDEALHL---VSNMPMKPDAVIWRSL 414
                                   ++  L + G  +EAL L   + N  MKP+ V   S+
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 415 LDAC 418
           L AC
Sbjct: 437 LPAC 440



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 169/342 (49%), Gaps = 8/342 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++   D+D A RVF Q+ + +  +W T++   A +     + + LF +M + GNV  +K 
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN-GCFVEVLELFDKM-KLGNVRINKV 330

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +   A  A A      +GK+ H    ++ + SD+ +   L+  YA CG  + A ++F  +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGL 390

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGM 255
             R LV+W+ +I A VQ G  + AL LF+ MQ    +P+  T  SI  ACA L+ L LG 
Sbjct: 391 QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H + ++     + +D+    +L+ MY KCG    A   F  M  RD+ +WNS+I G+A
Sbjct: 451 SIHCFTVK---ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             G    A+  F +L +  + +P++ T VGV+ AC     + +G     +++ +      
Sbjct: 508 QIGDPYNAIDMFYKLRL-SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV-KLGFESD 565

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                 L+D+ A+ G++  A  L +      D V W  ++ A
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/458 (45%), Positives = 297/458 (64%), Gaps = 8/458 (1%)

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           +A A L    +G++ H+   + G  S V++ N+L+H YA+CGH + A+K+F+ M ER+LV
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +WN +I+ +   G  + AL LFR M +   EPDG+T  S+ SACA L  L+LG  AH Y+
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++     L  ++   N+L+D+Y KCGS+  A +VF+ M ++ + SW S+I+G A++G  +
Sbjct: 123 VKV---GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGK 179

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F  L   +   P+ ITFVGVL AC+H GMV EG DYF  M  EY I P +EHYGC
Sbjct: 180 EALELFKELE-RKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGC 238

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDLL RAG + +A   + NMPM+P+AV+WR+LL A C  H  + L E    Q+++ E  
Sbjct: 239 MVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGA-CTIHGHLALGEVARAQLLQLEPK 297

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             SG YVLLS +YAS +RW+DV  VR+ M  +GV K PG S +E+    HEF  GD SHP
Sbjct: 298 H-SGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHP 356

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           QT++IY  L  I + LK  GY P  S   + D  ++ K+++L  HSE++AIA  ++N   
Sbjct: 357 QTEEIYVKLAEITKLLKLEGYVPHISN-VLADIEEEEKETALSYHSEKIAIAFMLINTAA 415

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           G+PIRV KNLRVC DCH   KLIS++F+ EI+VRDR+R
Sbjct: 416 GIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 140/274 (51%), Gaps = 14/274 (5%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           +++H+ A+R         + + + ++H +A+    + A ++F  +   N  TWN++I   
Sbjct: 15  EKVHSIAIRNGF---ESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGY 71

Query: 109 ARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
           A  ++ +P +A+ LF+ M  +G V PD  T    L ACA L A + G++AH ++ K GL 
Sbjct: 72  A--LNGRPNEALTLFREMGLRG-VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 128

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            +++  N+L+  YA CG +  A+KVFD M E+S+VSW  +I      G    AL+LF+ +
Sbjct: 129 GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKEL 188

Query: 228 QIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCK 285
           +     P   TF  +  AC+    +  G     Y  R   ++ +V  +     ++D+  +
Sbjct: 189 ERKGLMPSEITFVGVLYACSHCGMVDEGF---DYFKRMKEEYGIVPKIEHYGCMVDLLGR 245

Query: 286 CGSLDIARQVFESMP-KRDLTSWNSIILGFALHG 318
            G +  A +  ++MP + +   W +++    +HG
Sbjct: 246 AGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 279


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/607 (39%), Positives = 343/607 (56%), Gaps = 25/607 (4%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           P P  ++HS            N++++L S    +++   +Q+HA+ L +         ++
Sbjct: 61  PCPSPYNHS------------NYATILRSCVLSRAVRPGRQLHARLLVSGTGLD---AVL 105

Query: 71  YSRIIH-FASFADLDYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
            +R++  +AS   +  A RVF ++ N  N F WN LIRA AR    +  AI L++ M+  
Sbjct: 106 ATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCE-AAIELYRAMLAY 164

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G++ PD  T+P  LKACA L   S G++ H  + +    +DV++   LI  YA CG +D 
Sbjct: 165 GSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDE 224

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A  VF++   R    WN MI A  Q G    AL L R M      P   T  S  SA A 
Sbjct: 225 AWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAV 284

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
            + L  G   H Y  R       +   +  SL+DMY K G + +A  +FE +  R+L SW
Sbjct: 285 ASALPRGRELHGYGWRR---GFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISW 341

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N++I GF +HG A+ A + F R+  E    P+ ITFVGVLSACNH GMV E ++ FD+M+
Sbjct: 342 NAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMV 401

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
             Y+I P ++HY CLVD+L  +G   EA  ++  M +KPD+ IW +LL+  CK H +V L
Sbjct: 402 TVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNG-CKIHKNVEL 460

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
           +E   +++IE E    +G YVLLS +YA + +W +   VRKLMT++G+ K   CS IE+ 
Sbjct: 461 AELALQKLIELEPED-AGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELK 519

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
           G  H F  GD SHP++  IY  L+ ++  +   GY PD +      E DD K++ +  HS
Sbjct: 520 GKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVE-DDEKRNMVWGHS 578

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLAIA G+++  P   + V KNLRVC+DCH V KLIS+I   EII+RD  R+HHF +G 
Sbjct: 579 ERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGE 638

Query: 608 CSCMDYW 614
           CSC D+W
Sbjct: 639 CSCKDHW 645


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/552 (40%), Positives = 316/552 (57%), Gaps = 49/552 (8%)

Query: 102 NTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK----Q 156
           + LIRA +RS  A+P  A+ L+  ++  G +LP  HT P  LK+ A   A          
Sbjct: 41  DALIRALSRS--ARPHLALPLYAHLLRAG-LLPTPHTLPSLLKSMALSPAVPGAAVLALT 97

Query: 157 AHAHIFKRGL-----VSDVYIN---------------------------NSLIHFYASCG 184
            H H  K GL     VS+  I                            N+LI  YA  G
Sbjct: 98  VHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAG 157

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            L  A  +FD M  R+ VSW+ M++ +VQ G+   AL++F RMQ     PD      + +
Sbjct: 158 RLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLA 217

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA    L  G W H Y+     H +  ++    +L+DMY KCG + +A  VFE M  ++
Sbjct: 218 ACAQHGALEQGKWVHGYLK---AHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKN 274

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + +W ++I G A+HGR   A+  F ++       P+ I F+GVL AC H G+V +GR+ F
Sbjct: 275 VLAWTTMIKGLAMHGRGSEAVMLFAQME-SSGIRPDDIAFIGVLCACTHAGLVDKGRELF 333

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           D M+ +Y I P +EHYGC+VDLLAR G + EA  ++  MPM+PDA+IW +L+ A C+ H 
Sbjct: 334 DSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALM-AGCRFHK 392

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           +V  +E VAK  I  E    SG YVLLS +YA++ R      +R LM +KGV K PGCS+
Sbjct: 393 NVEFAEYVAKHWILLEPDK-SGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCST 451

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK-SRGYTPDYSQAAMVDELDDGKQSS 542
           +E++G+ H+F  GD SHP+ K I      ID +++   GY PD  +  ++D  ++ K+ +
Sbjct: 452 VEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEV-LLDIEEEEKEGA 510

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L  HSE+LAIA  ++++   MPIR+FKNLRVC DCH VTKLIS+++  EI+VRDR RFH 
Sbjct: 511 LSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHL 570

Query: 603 FKDGSCSCMDYW 614
           FK+G+CSC DYW
Sbjct: 571 FKEGTCSCKDYW 582



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 8/269 (2%)

Query: 57  LRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
           LRTA      T    + I  +A    L  A  +F ++   N+ +W+ ++    ++ D + 
Sbjct: 135 LRTAAAVDASTF--NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGR- 191

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+ +F RM +  +V PD       L ACA   A  QGK  H ++   G+  +++   +L
Sbjct: 192 EALRIFARM-QAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTAL 250

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDG 235
           +  Y+ CG + LA  VF+ M  +++++W  MI      G    A+ LF +M+     PD 
Sbjct: 251 VDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDD 310

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
             F  +  AC     +  G      ++R   + +   +     ++D+  + G L  A+++
Sbjct: 311 IAFIGVLCACTHAGLVDKGRELFDSMVR--KYGIKPKIEHYGCMVDLLARNGFLYEAKEM 368

Query: 296 FESMP-KRDLTSWNSIILGFALHGRAEAA 323
            + MP + D   W +++ G   H   E A
Sbjct: 369 IQKMPMEPDALIWGALMAGCRFHKNVEFA 397


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 342/602 (56%), Gaps = 16/602 (2%)

Query: 19   SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
            S F+  +  G   ++ S++S+L+ C S+  L   +QIH +  +  L       +  + + 
Sbjct: 543  SCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLD--VSVSNALLT 600

Query: 76   HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
             +A    ++   +VF+Q+   +  +WN+ I A A+   +  QA+  F  M++ G   P++
Sbjct: 601  LYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAG-WRPNR 659

Query: 136  HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
             TF   L A +       G Q HA I K  +  D  I N+L+ FY  C  ++    +F  
Sbjct: 660  VTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSR 719

Query: 196  MLER-SLVSWNVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLSL 253
            M ER   VSWN MI  ++  G    A+ L +  MQ   + DG+TF ++ SACA +ATL  
Sbjct: 720  MSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLER 779

Query: 254  GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
            GM  HA  +R C   L +DV+V ++L+DMY KCG +D A + FE MP R++ SWNS+I G
Sbjct: 780  GMEVHACAVRAC---LESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISG 836

Query: 314  FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
            +A HG  + ALK F R+  +   SP+ +TFVGVLSAC+H G+V EG  +F  M   Y ++
Sbjct: 837  YARHGHGQKALKIFTRMK-QHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLS 895

Query: 374  PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEEVA 432
            P +EH+ C+VDLL RAG++ +    +  MPM P+ +IWR++L ACC+ +  +  L +  A
Sbjct: 896  PRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAA 955

Query: 433  KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            K +IE E       YVLLS ++A+   W DV   R  M    V K+ GCS + +    H 
Sbjct: 956  KMLIELEPQNAVN-YVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHL 1014

Query: 493  FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
            F AGD +HP+ ++IY  L  +  K++  GY P+ ++ A+ D   + K+  L  HSE+LAI
Sbjct: 1015 FVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPE-TKYALYDLELENKEELLSYHSEKLAI 1073

Query: 553  ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
            A  +L  K  +PIR+ KNLRVC DCH   K IS+I   +II+RD  RFHHF  G CSC D
Sbjct: 1074 AF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGD 1132

Query: 613  YW 614
            YW
Sbjct: 1133 YW 1134



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 199/424 (46%), Gaps = 25/424 (5%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK-----QIHAQALRTALPQQHKTLLIYSR 73
           S+F    + G   NH ++ S+L  C+           QIHA   +  LP     +L    
Sbjct: 227 SLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICK--LPCVSDMILSNVL 284

Query: 74  IIHFASFA-DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--- 129
           +  ++  +  +D A RVF +I+  NS TWN++I    R  DA   A  LF  M  +G   
Sbjct: 285 MSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDA-VSAFKLFSVMQMEGVEL 343

Query: 130 NVLPDKHTFPFALKACAYLF--AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           N+ P+++T    + A   L        +Q    I K G + D+Y+ ++L++ +A  G +D
Sbjct: 344 NLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMD 403

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247
            A  +F  M +R+ V+ N ++    +  + + A K+F+ M+ L E +  +   + S    
Sbjct: 404 CAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTE 463

Query: 248 LATLS----LGMWAHAYILRHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            + L      G   HAY+ R     LV   + + N+L++MY KC ++D A  VF+ MP +
Sbjct: 464 FSNLKEGKRKGQEVHAYLFRS---GLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK 520

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           D  SWNS+I G   + R E A+  F  +       P++ + +  LS+C+  G ++ GR  
Sbjct: 521 DTVSWNSMISGLDHNERFEEAVSCFHTM-KRNGMVPSNFSVISTLSSCSSLGWLTLGRQI 579

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
                 ++ +   +     L+ L A   +I+E   +   MP + D V W S + A  K  
Sbjct: 580 HGEGF-KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGALAKYE 637

Query: 423 ASVV 426
           ASV+
Sbjct: 638 ASVL 641



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  ++K G   DV+  N+LI+ Y   G+L  A K+FD M +++LVSW+ +I  + Q    
Sbjct: 163 HLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMP 222

Query: 218 DSALKLFRR-MQILFEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           D A  LF+  +     P+ +   S   AC   G   + LGM  HA+I   C    V+D++
Sbjct: 223 DEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFI---CKLPCVSDMI 279

Query: 275 VNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV-- 331
           ++N L+ MY  C GS+D A +VF+ +  R+  +WNSII  +   G A +A K F  +   
Sbjct: 280 LSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQME 339

Query: 332 -VEESFSPNSITFVG-VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY---GCLVDLL 386
            VE +  PN  T    V +AC+   +   G    + M+     +  L        LV+  
Sbjct: 340 GVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGF 396

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           AR G +D A  +   M    +AV    L+    ++H      EE AK
Sbjct: 397 ARYGLMDCAKMIFKQM-YDRNAVTMNGLMVGLARQHQ----GEEAAK 438


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 343/607 (56%), Gaps = 24/607 (3%)

Query: 21   FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH- 76
            F++ R  G     SS   ++  C ++  L   +  H QA           L + S +I  
Sbjct: 2003 FSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETD---LFVSSALIDM 2059

Query: 77   FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            ++    L  A  +F +I   N  +W ++I    ++  A   A++LF+  +E+   + D +
Sbjct: 2060 YSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD-NALLLFKDFLEEETEVEDGN 2118

Query: 137  TFPF-------ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
              P         L AC+ +      +  H  + K+G    + + N+L+  YA CG   ++
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178

Query: 190  NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAG 247
             KVFD M E+  +SWN MI  + Q G    AL++F  M   +    +  T  ++  ACA 
Sbjct: 2179 KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAH 2238

Query: 248  LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
               L  G   H  +++     L  +V V  S+IDMYCKCG +++A++ F+ M ++++ SW
Sbjct: 2239 AGALRAGKCIHDQVIKM---DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSW 2295

Query: 308  NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
             +++ G+ +HGRA+ AL  F ++V      PN ITFV VL+AC+H G+V EG  +F+ M 
Sbjct: 2296 TAMVAGYGMHGRAKEALDIFYKMV-RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 2354

Query: 368  NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            ++Y+I P +EHYGC+VDL  RAG ++EA +L+  M MKPD V+W SLL AC + H +V L
Sbjct: 2355 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC-RIHKNVDL 2413

Query: 428  SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
             E  A+++ E +   C G YVLLS +YA A RW DV  +R LM ++ + K PG S +E+ 
Sbjct: 2414 GEIAAQKLFELDPDNC-GYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 2472

Query: 488  GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
            G  H F  GD  HP  + IY +L+ +  +L+  GY P+ + + + D  ++ K+  LR+HS
Sbjct: 2473 GRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMT-SVLHDVDEEEKEIILRVHS 2531

Query: 548  ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
            E+LA+A G++N  PG  I + KNLRVC DCH V KLIS++ + + +VRD  RFHHFKDG 
Sbjct: 2532 EKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGV 2591

Query: 608  CSCMDYW 614
            CSC DYW
Sbjct: 2592 CSCGDYW 2598



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 46/392 (11%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNS 98
           L  CK+   L+QIHA+ +R+ L       L+  ++IH +++   + YA  +FYQI+NP +
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQ---LLTRKLIHLYSTHGRIAYAILLFYQIQNPCT 90

Query: 99  FTWNTLIRACARSVDA-KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           FTWN +IRA   +++    QA++L++ M+ QG +  DK TFPF +KAC    +   GK  
Sbjct: 91  FTWNLIIRA--NTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVV 147

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  + K G   DV++ N+LI FY  CGH   A KVF+ M  R++VSW  +I   +  G+ 
Sbjct: 148 HGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 218 -------------------------------DSALKLFRRMQI--LFEPDGYTFQSITSA 244
                                          + AL+LF+RMQ   +F P+ YT  S+  A
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF-PNEYTMVSLIKA 266

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           C  +  L+LG   H Y +++C   +   V +  +LIDMY KCGS+  A +VFE+MP++ L
Sbjct: 267 CTEMGILTLGRGIHDYAIKNC---IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 323

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +WNS+I    +HG  + AL  F  +    +  P++ITF+GVL AC H   V EG  YF 
Sbjct: 324 PTWNSMITSLGVHGLGQEALNLFSEME-RVNVKPDAITFIGVLCACVHIKNVKEGCAYFT 382

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            M   Y I P+ EHY C+ +L AR+ N+DEA 
Sbjct: 383 RMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 148/326 (45%), Gaps = 45/326 (13%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +  +GN+   K  F   L+ C     F   +Q HA I + GL +D  +   LIH Y++ G
Sbjct: 19  LTPRGNIRAKKALF--LLQNCK---NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG 73

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            +  A  +F  +      +WN++I A    G  + AL L++ M       D +TF  +  
Sbjct: 74  RIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIK 133

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG---------------- 287
           AC    ++ LG   H  ++++       DV V N+LID Y KCG                
Sbjct: 134 ACTNFLSIDLGKVVHGSLIKY---GFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRN 190

Query: 288 ---------------SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
                           L  AR++F+ +P +++ SW ++I G+  + + E AL+ F R+  
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDLLARAGN 391
           E  F PN  T V ++ AC   G+++ GR   D  I   N   +  + G  L+D+ ++ G+
Sbjct: 251 ENIF-PNEYTMVSLIKACTEMGILTLGRGIHDYAIK--NCIEIGVYLGTALIDMYSKCGS 307

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDA 417
           I +A+ +   MP K     W S++ +
Sbjct: 308 IKDAIEVFETMPRK-SLPTWNSMITS 332


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 332/582 (57%), Gaps = 12/582 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+S +  C   SQL QIHA  + T+  Q     L +      A F DL Y+ R+F  + N
Sbjct: 30  LISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTN 89

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P    +N ++RA   S+   P   +   R +E+  V  D  +  FA+K+C  L +   G 
Sbjct: 90  PFVSHYNAMLRA--YSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGI 147

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HA IF  G  +D  +  S++  Y+ CG  + A K+FD + ++ +V+WNV+I    +  
Sbjct: 148 QIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNK 207

Query: 216 EFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
               AL LF  MQ    L +PD  T   +  ACA L  L  G   H YI +H      T+
Sbjct: 208 RTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQH---GYNTE 264

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + NSLI MY +CG +D A +VF+ M ++++ SW+++I G +++G    A++ F  +  
Sbjct: 265 SNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQ- 323

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +    P   TF  VLSAC+H G+V EG  +FD M  E+ I P + HYGC+VDLL RAG +
Sbjct: 324 KNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGML 383

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           D+A  L+ +M ++PDA +WR+LL A C+ H    L E + + +IE +    +G YVLL  
Sbjct: 384 DQAYELIMSMEVRPDATMWRTLLGA-CRIHGHGNLGERIVEHLIELKSQE-AGDYVLLLN 441

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +Y+SA  W+ V  +RKLM +KG+   P C++IE++G+ H+F   D SHP   +IY  LD 
Sbjct: 442 IYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDE 501

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           I+++LK  GY  + S      E  D K  +L  HSE+LAIA G+L   PG  IR+  N+R
Sbjct: 502 INKQLKIAGYEAEMSSELHRLEPKD-KGYALSNHSEKLAIAFGVLATPPGRTIRIANNIR 560

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            C DCH   K IS ++N +++VRDR+RFHHF++G CSC D+W
Sbjct: 561 TCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/586 (37%), Positives = 348/586 (59%), Gaps = 16/586 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAFRV 89
           S ++S+  E   +S  +Q H   +++ L          + +Y++ +   S   +D A +V
Sbjct: 149 SGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGS---VDDARKV 205

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++   N  +W  +I    +S     +AI LF  M+ QG V P+  TF   LKACA L 
Sbjct: 206 FDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV-QGQVKPNHFTFSSVLKACANLS 264

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G+Q +A + K  L S   + NSLI  Y+ CG+++ A K FD + E++LVS+N +++
Sbjct: 265 DIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVN 324

Query: 210 AFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           A+ +    + A +LF  ++      + +TF S+ S  + +  +  G   H+ IL+     
Sbjct: 325 AYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS---G 381

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
             +++ + N+LI MY +CG+++ A QVF  M   ++ SW S+I GFA HG A  AL+ F 
Sbjct: 382 FKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFH 441

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           +++ E   SPN +T++ VLSAC+H G++SEG  +F  M  E+ I P +EHY C+VDLL R
Sbjct: 442 KML-EAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGR 500

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           +G+++EA+ LV++MP K DA++ R+ L A C+ H ++ L +  A+ ++E +       Y+
Sbjct: 501 SGHLEEAMELVNSMPFKADALVLRTFLGA-CRVHGNMDLGKHAAEMILEQDPHD-PAAYI 558

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS ++ASA +W +V  +RK M ++ +TKE GCS IE++   H+F+ GDTSHPQ ++IY 
Sbjct: 559 LLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYD 618

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD +  K+K  GY P  +   + D  ++ K+  L  HSE++A+A G ++     PIRVF
Sbjct: 619 ELDQLALKIKELGYIPS-TDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVF 677

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH   K  S +   EI++RD  RFHHFKDG+CSC DYW
Sbjct: 678 KNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 186/363 (51%), Gaps = 14/363 (3%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL+ A++VF ++ + N  TW TL+    + +     A+ LF  M+  G V PD+ T   
Sbjct: 93  GDLESAYKVFDRMPDRNVVTW-TLMITRFQQLGFSRDAVDLFLDMVLSGYV-PDRFTLSG 150

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNML 197
            + ACA +   S G+Q H  + K GL  DV +  SL+  YA C   G +D A KVFD M 
Sbjct: 151 VVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP 210

Query: 198 ERSLVSWNVMIDAFVQFGEFD-SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
             +++SW  +I  +VQ G  D  A++LF  M Q   +P+ +TF S+  ACA L+ + LG 
Sbjct: 211 VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             +A +++     L +   V NSLI MY +CG+++ AR+ F+ + +++L S+N+I+  +A
Sbjct: 271 QVYALVVK---MRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
               +E A + F+  +       N+ TF  +LS  +  G + +G      ++        
Sbjct: 328 KSLNSEEAFELFNE-IEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSN 385

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           L     L+ + +R GNI+ A  + + M    + + W S++     KH     + E   ++
Sbjct: 386 LHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITG-FAKHGFATRALETFHKM 443

Query: 436 IES 438
           +E+
Sbjct: 444 LEA 446



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 178/348 (51%), Gaps = 19/348 (5%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +W+ LI +C  + +   +AI  F  M+E G   P+++ F    +AC+     S GK    
Sbjct: 9   SWSALI-SCYANNEKAFEAISAFFDMLECG-FYPNEYCFTGVFRACSNKENISLGKIIFG 66

Query: 160 HIFKRGLV-SDVYINNSLIH-FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
            + K G   SDV +  +LI  F    G L+ A KVFD M +R++V+W +MI  F Q G  
Sbjct: 67  FLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFS 126

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
             A+ LF  M +  + PD +T   + SACA +  LSLG   H  +++     L  DV V 
Sbjct: 127 RDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMK---SGLDLDVCVG 183

Query: 277 NSLIDMYCKC---GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE-AALKYFDRLVV 332
            SL+DMY KC   GS+D AR+VF+ MP  ++ SW +II G+   G  +  A++ F  + V
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM-V 242

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +    PN  TF  VL AC +   +  G   + +++ +  +  +      L+ + +R GN+
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV-KMRLASINCVGNSLISMYSRCGNM 301

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           + A     ++  + + V + ++++A    +A  + SEE  +   E EG
Sbjct: 302 ENARKAF-DVLFEKNLVSYNTIVNA----YAKSLNSEEAFELFNEIEG 344



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 15/248 (6%)

Query: 198 ERSLVSWNVMIDAFVQFGE-FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
           +R LVSW+ +I  +    + F++    F  ++  F P+ Y F  +  AC+    +SLG  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFA 315
              ++L+       +DV V  +LIDM+ K  G L+ A +VF+ MP R++ +W  +I  F 
Sbjct: 64  IFGFLLK--TGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             G +  A+  F  +V+   + P+  T  GV+SAC   G++S GR +  +++       V
Sbjct: 122 QLGFSRDAVDLFLDMVL-SGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDV 180

Query: 376 LEHYGC-LVDLLARA---GNIDEALHLVSNMP----MKPDAVIWRSLLDACCKKHASVVL 427
               GC LVD+ A+    G++D+A  +   MP    M   A+I   +    C + A  + 
Sbjct: 181 C--VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELF 238

Query: 428 SEEVAKQV 435
            E V  QV
Sbjct: 239 LEMVQGQV 246


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 339/608 (55%), Gaps = 36/608 (5%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +  S+L  C  +  L   +++HA  L+        + +  + +  +AS   + +A RVF 
Sbjct: 262 TFASALPACSRLELLGVGREVHAFVLKDD-DLAANSFVASALVDMYASNEQVSHARRVFD 320

Query: 92  QIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            +         WN +I   A+      +AI LF RM  +    P + T    L ACA   
Sbjct: 321 MVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE 380

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            F+  +  H ++ KR + S+ ++ N+L+  YA  G +D A+ +F  +  R +VSWN +I 
Sbjct: 381 VFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLIT 440

Query: 210 AFVQFGEFDSALKLFRRMQI---------LFE------------PDGYTFQSITSACAGL 248
             +  G    A +L R MQ+         + E            P+  T  ++   CA L
Sbjct: 441 GCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVL 500

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           A  + G   H Y +RH   +L +D+ V ++L+DMY KCG L +AR VF+ +P+R++ +WN
Sbjct: 501 AAPARGKEIHGYAVRH---ALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWN 557

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
            +I+ + +HG  + AL  FDR+V     +PN +TF+  L+AC+H G+V  G + F  M  
Sbjct: 558 VLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKR 617

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVL 427
           +Y   P    + C+VD+L RAG +DEA  ++S+M P +     W ++L A C+ H +V L
Sbjct: 618 DYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGA-CRLHRNVKL 676

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
               A+++ E E    S  YVLL  +Y++A  W +   VR +M  +GV KEPGCS IE+D
Sbjct: 677 GRIAAERLFELEPDEASH-YVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELD 735

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS-LRLH 546
           G  H F AG+++HP++ Q++  +D + E+++  GY PD S   ++ ++D+ ++++ LR H
Sbjct: 736 GAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTS--CVLHDVDEAEKAAMLRYH 793

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LAIA G+L   PG  IRV KNLRVC DCHE  K ISR+   EI++RD  RFHHF+DG
Sbjct: 794 SEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDG 853

Query: 607 SCSCMDYW 614
           +CSC DYW
Sbjct: 854 TCSCGDYW 861



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 164/341 (48%), Gaps = 34/341 (9%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD--------KHTFPFALKACAYL 148
           ++ ++N+LI            A+ LF+R     + L D          T    L AC++L
Sbjct: 117 DAVSYNSLI-----------SALCLFRRWGHALDALRDMLADHEVSSFTLVSVLLACSHL 165

Query: 149 F--AFSQGKQAHAHIFKRGLVS---DVYINNSLIHFYASCGHLDLANKVF--DNMLERSL 201
                  G++AHA   K G +    + +  N+L+  YA  G +D A ++F         L
Sbjct: 166 ADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDL 225

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           V+WN MI   VQ G  + A+++   M  L   PDG TF S   AC+ L  L +G   HA+
Sbjct: 226 VTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAF 285

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHG 318
           +L+  D  L  +  V ++L+DMY     +  AR+VF+ +P+  R L  WN++I G+A HG
Sbjct: 286 VLK--DDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG 343

Query: 319 RA-EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
              E A++ F R+  E   +P+  T  GVL AC  R  V  G++     + + ++     
Sbjct: 344 GMDEEAIELFSRMEAEAGCAPSETTMAGVLPACA-RSEVFTGKEAVHGYVVKRDMASNRF 402

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
               L+D+ AR G +DEA H +  M    D V W +L+  C
Sbjct: 403 VQNALMDMYARLGRMDEA-HTIFAMIDLRDIVSWNTLITGC 442



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 44/188 (23%)

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V+N+L+  Y +CG LD A  +F + P   RD  S+NS+I    L  R   AL     ++ 
Sbjct: 87  VSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLA 146

Query: 333 EESFSPNSITFVGVLSACNH------------------RGMVSEGRDYF--DVMINEYNI 372
           +   S  S T V VL AC+H                   G + +GR+ F  + +++ Y  
Sbjct: 147 DHEVS--SFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYAR 204

Query: 373 TPVLEH-----------------YGCLVDLLARAGNIDEALHLVSNM---PMKPDAVIWR 412
             +++                  +  ++ LL + G  +EA+ ++ +M    ++PD V + 
Sbjct: 205 LGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFA 264

Query: 413 SLLDACCK 420
           S L AC +
Sbjct: 265 SALPACSR 272


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 336/584 (57%), Gaps = 14/584 (2%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           ++++S +  C +   L   + +H  A++ +  ++    L    +  ++   +L+ A +VF
Sbjct: 252 ATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKE--LTLNNCLLDMYSKSGNLNSAIQVF 309

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +   +  +W ++I   AR       ++ LF  M ++G + PD  T    L ACA    
Sbjct: 310 ETMGERSVVSWTSMIAGYARE-GLSDMSVRLFHEMEKEG-ISPDIFTITTILHACACTGL 367

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GK  H +I +  + SD++++N+L+  YA CG +  A+ VF  M  + +VSWN MI  
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           + +    + AL LF  MQ   +P+  T   I  ACA LA L  G   H +ILR+      
Sbjct: 428 YSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRN---GFS 484

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            D  V N+L+DMY KCG+L +AR +F+ +P++DL SW  +I G+ +HG    A+  F+ +
Sbjct: 485 LDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEM 544

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                  P+ ++F+ +L AC+H G++ EG  +F++M N   I P  EHY C+VDLLARAG
Sbjct: 545 R-NSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAG 603

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
           N+ +A   +  MP++PDA IW +LL   C+ +  V L+E+VA+ V E E    +G YVLL
Sbjct: 604 NLSKAYKFIKMMPIEPDATIWGALL-CGCRIYHDVKLAEKVAEHVFELEPE-NTGYYVLL 661

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           + +YA A +W +V  +R+ +  +G+ K PGCS IEI G  H F  GD+SHP   +I   L
Sbjct: 662 ANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLL 721

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
                ++K  G+ P   + A++   D  K+ +L  HSE++A+A GIL+L PG  +RV KN
Sbjct: 722 KKTRTRMKEEGHFPKM-RYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKN 780

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCHE+ K +S++   +II+RD  RFHHFKDGSCSC  +W
Sbjct: 781 LRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 173/335 (51%), Gaps = 12/335 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A ++F ++ + +  +WN++I     S     + + LF++M+  G +  D  T    +
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYV-SNGLSEKGLDLFEQMLLLG-INTDLATMVSVV 258

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
             C+       G+  H +  K     ++ +NN L+  Y+  G+L+ A +VF+ M ERS+V
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 318

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  MI  + + G  D +++LF  M+     PD +T  +I  ACA    L  G   H YI
Sbjct: 319 SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI 378

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
               ++ + +D+ V+N+L+DMY KCGS+  A  VF  M  +D+ SWN++I G++ +    
Sbjct: 379 K---ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPN 435

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYG 380
            AL  F  + ++ +  PNSIT   +L AC     +  G++ +  ++ N +++   + +  
Sbjct: 436 EALNLF--VEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN-- 491

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            LVD+  + G +  A  L   +P K D V W  ++
Sbjct: 492 ALVDMYLKCGALGLARLLFDMIPEK-DLVSWTVMI 525



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 159/353 (45%), Gaps = 60/353 (16%)

Query: 122 FQRMIEQGNVLP----DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
            +R +E  N  P    +  T+   L+ CA L +   G++ H+ I    +  D  + + L+
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143

Query: 178 HFYASCGHL-------------------------------------------------DL 188
             Y +CG L                                                 + 
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A K+FD + +R ++SWN MI  +V  G  +  L LF +M +L    D  T  S+ + C+ 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
              L LG   H Y ++    S   ++ +NN L+DMY K G+L+ A QVFE+M +R + SW
Sbjct: 264 TGMLLLGRALHGYAIK---ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            S+I G+A  G ++ +++ F  +  +E  SP+  T   +L AC   G++  G+D  +  I
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEM-EKEGISPDIFTITTILHACACTGLLENGKDVHNY-I 378

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            E  +   L     L+D+ A+ G++ +A  + S M +K D V W +++    K
Sbjct: 379 KENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGGYSK 430


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/539 (40%), Positives = 326/539 (60%), Gaps = 15/539 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +  F  L+ A ++F Q+   N  +W T+I A ++      +A+ L   M+ + NV P+ +
Sbjct: 106 YVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK-CKIHQKALELLVLML-RDNVRPNVY 163

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L++C      S  +  H  I K GL SDV++ ++LI  +A  G  + A  VFD M
Sbjct: 164 TYSSVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
           +    + WN +I  F Q    D AL+LF+RM+   F  +  T  S+  AC GLA L LGM
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGM 280

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
            AH +I+++       D+++NN+L+DMYCKCGSL+ A +VF  M +RD+ +W+++I G A
Sbjct: 281 QAHVHIVKY-----DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G ++ ALK F+R+       PN IT VGVL AC+H G++ +G  YF  M   Y I PV
Sbjct: 336 QNGYSQEALKLFERMK-SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPV 394

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            EHYGC++DLL +AG +D+A+ L++ M  +PDAV WR+LL A C+   ++VL+E  AK+V
Sbjct: 395 REHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA-CRVQRNMVLAEYAAKKV 453

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           I  +    +G Y LLS +YA++++W+ V  +R  M D+G+ KEPGCS IE++   H F  
Sbjct: 454 IALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFII 512

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SHPQ  ++   L+ +  +L   GY P+ +   + D   +  + SLR HSE+LA+A G
Sbjct: 513 GDNSHPQIVEVSKKLNQLIHRLTGIGYVPE-TNFVLQDLEGEQMEDSLRHHSEKLALAFG 571

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++ L     IR+ KNLR+C DCH   KL S++    I++R   R+HHF+DG CSC DYW
Sbjct: 572 LMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 13/303 (4%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P+A+     +   G +  D  T+   +K C    A  +G     H++  G    +++ N 
Sbjct: 43  PRAMKAMDSLQSHG-LWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNV 101

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPD 234
           LI+ Y     L+ A+++FD M +R+++SW  MI A+ +      AL+L   M +    P+
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            YT+ S+  +C G++ + +    H  I++     L +DV V ++LID++ K G  + A  
Sbjct: 162 VYTYSSVLRSCNGMSDVRM---LHCGIIK---EGLESDVFVRSALIDVFAKLGEPEDALS 215

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VF+ M   D   WNSII GFA + R++ AL+ F R+     F     T   VL AC    
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM-KRAGFIAEQATLTSVLRACTGLA 274

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           ++  G     V I +Y+   +L +   LVD+  + G++++AL + + M  + D + W ++
Sbjct: 275 LLELGMQAH-VHIVKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQMKER-DVITWSTM 330

Query: 415 LDA 417
           +  
Sbjct: 331 ISG 333


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/565 (39%), Positives = 324/565 (57%), Gaps = 17/565 (3%)

Query: 54  AQALRTALPQQH---KTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           A A   A+P ++     +LI   + H     DLD A +VF ++   N  TWN ++    +
Sbjct: 11  AIAFFNAMPMRNIMSHNILINGHVQH----GDLDSAIKVFDEMLERNVATWNAMVSGLIQ 66

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
             +     + LF+ M E G  LPD+ T    L+ CA L A   GKQ HA++ K G   ++
Sbjct: 67  -FEFNENGLFLFREMHELG-FLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNL 124

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
            + +SL H Y   G L    KV   M  R++V+WN +I    Q G F+  L L+  M++ 
Sbjct: 125 VVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMS 184

Query: 231 -FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
              PD  T  S+ S+ A LATL  G   HA  ++   +S V    V +SLI MY KCG L
Sbjct: 185 GLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVA---VLSSLISMYSKCGCL 241

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + + +        D   W+S+I  +  HGR E A+  F+++  +E    N +TF+ +L A
Sbjct: 242 EDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQME-QEGLGGNDVTFLSLLYA 300

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C+H G+  +G  +F +M+ +Y + P LEHY C+VDLL R+G +DEA  ++ +MP++ D V
Sbjct: 301 CSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVV 360

Query: 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
           IW++LL AC + H +  ++   A++++       S  YVLLS ++ASA+RW DV  VR  
Sbjct: 361 IWKTLLSAC-RIHRNADMATRTAEEILRLNPQD-SATYVLLSNIHASAKRWKDVSKVRTT 418

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529
           M D+ V KEPG S +E+     +F  GD SHP +++I  +L  + E++K RGY PD +  
Sbjct: 419 MRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPD-TAT 477

Query: 530 AMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
              D   + K++SL  HSE+LAIA G++N+ PG PIRV KNLR+C DCH   KLIS I N
Sbjct: 478 VFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINN 537

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            EIIVRD +RFHHFK G CSC DYW
Sbjct: 538 REIIVRDTSRFHHFKHGKCSCGDYW 562



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           MY K G +  A   F +MP R++ S N +I G   HG  ++A+K FD ++
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEML 50


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 346/583 (59%), Gaps = 15/583 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
            S +  L  C+++  ++Q+HA  +     Q    L+I +++++ +A    +D A+ +F  
Sbjct: 4   ESCIDLLLRCRNVFHIRQVHAHVVANGTLQD---LVIANKLLYTYAQHKAIDDAYSLFDG 60

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +S TW+ ++   A++ D        F+ ++  G V PD +T PF ++ C       
Sbjct: 61  LTMRDSKTWSVMVGGFAKAGD-HAGCYATFRELLRCG-VTPDNYTLPFVIRTCRDRTDLQ 118

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+  H  + K GL+SD ++  SL+  YA C  ++ A ++F+ ML + LV+W VMI A+ 
Sbjct: 119 IGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA 178

Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
               ++S L LF RM +    PD     ++ +ACA L  +    +A+ YI+R+       
Sbjct: 179 DCNAYES-LVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRN---GFSL 234

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV++  ++IDMY KCGS++ AR+VF+ M ++++ SW+++I  +  HGR + A+  F  ++
Sbjct: 235 DVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLF-HMM 293

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
           +  +  PN +TFV +L AC+H G++ EG  +F+ M  E+ + P ++HY C+VDLL RAG 
Sbjct: 294 LSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGR 353

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           +DEAL L+  M ++ D  +W +LL AC + H+ + L+E+ A  ++E +     G YVLLS
Sbjct: 354 LDEALRLIEAMTVEKDERLWSALLGAC-RIHSKMELAEKAANSLLELQPQ-NPGHYVLLS 411

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YA A +W  V   R +MT + + K PG + IE+D   ++F  GD SHPQ+K+IY  L 
Sbjct: 412 NIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLM 471

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + +KL+  GY PD +   + D  ++ KQ  L  HSE+LAIA G++ +  G PIR+ KNL
Sbjct: 472 SLIKKLEMAGYVPD-TDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNL 530

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH  +K++S I    IIVRD  RFHHF DG+CSC DYW
Sbjct: 531 RVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 338/603 (56%), Gaps = 30/603 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S L + ++ + +S  +++HA  L+ +      + +  + +  +AS   +  A RVF  +
Sbjct: 275 ASALPACSQLEMLSLGREMHAYVLKDS-DLAANSFVASALVDMYASHERVGVARRVFDMV 333

Query: 94  ENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
              +     WN ++   A++     +A+ LF RM  +  V+P + T    L ACA    F
Sbjct: 334 PGGHRQLGLWNAMVCGYAQA-GMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETF 392

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           +  +  H ++ KRG+  + ++ N+L+  YA  G ++ A  +F  +  R +VSWN +I   
Sbjct: 393 AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGC 452

Query: 212 VQFGEFDSALKLFRRMQILFE-------------------PDGYTFQSITSACAGLATLS 252
           V  G    A +L R MQ                       P+  T  ++   CA LA  +
Sbjct: 453 VVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPA 512

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H Y +RH   +L +D+ V ++L+DMY KCG L ++R VF+ +PKR++ +WN +I+
Sbjct: 513 KGKEIHGYAMRH---ALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIM 569

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            + +HG  + A+  FDR+V+     PN +TF+  L+AC+H GMV  G + F  M   + +
Sbjct: 570 AYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGV 629

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            P  + + C VD+L RAG +DEA  ++++M P +     W S L A C+ H +V L E  
Sbjct: 630 QPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGA-CRLHRNVPLGEIA 688

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+++ + E    S  YVLL  +Y++A  W     VR  M  +GV+KEPGCS IE+DG+ H
Sbjct: 689 AERLFQLEPDEASH-YVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIH 747

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F AG+++HP++  ++  +D + E+++++GYTPD S + + D  +  K + LR HSE+LA
Sbjct: 748 RFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTS-SVLHDIEESEKAAILRYHSEKLA 806

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA G+L   PG  IRV KNLRVC DCHE  K ISR+   EI++RD  RFHHF DG+CSC 
Sbjct: 807 IAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCG 866

Query: 612 DYW 614
           DYW
Sbjct: 867 DYW 869



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 199/412 (48%), Gaps = 24/412 (5%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS 98
           S    +S+  ++ IH  ALR  L       +  + +  +A   DL  A  +F  + + ++
Sbjct: 68  SAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRDA 127

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA-FSQGKQA 157
            T+N+LI A        P A+   + M+ +G+ L    T    L AC++L      G++A
Sbjct: 128 VTFNSLIAALCLFRRWLP-ALDALRDMLLEGHPL-SSFTLVSVLLACSHLAEDLRLGREA 185

Query: 158 HAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLER-----SLVSWNVMIDA 210
           HA   K G +   + +  N+L+  YA  G +D A  +F ++         +V+WN M+  
Sbjct: 186 HAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSL 245

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
            VQ G    A+++   M      PDG TF S   AC+ L  LSLG   HAY+L+  D  L
Sbjct: 246 LVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK--DSDL 303

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALKYF 327
             +  V ++L+DMY     + +AR+VF+ +P   R L  WN+++ G+A  G  E AL+ F
Sbjct: 304 AANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELF 363

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT--PVLEHYGCLVDL 385
            R+  E    P+  T  GVL AC  R     G++     + +  +   P +++   L+DL
Sbjct: 364 ARMEAEAGVVPSETTIAGVLPACA-RSETFAGKEAVHGYVLKRGMADNPFVQN--ALMDL 420

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASVVLSEEVAKQ 434
            AR G+++ A  + + +  + D V W +L+  C  +   H +  L  E+ +Q
Sbjct: 421 YARLGDMEAARWIFAAIEPR-DVVSWNTLITGCVVQGHIHDAFQLVREMQQQ 471


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/630 (36%), Positives = 351/630 (55%), Gaps = 59/630 (9%)

Query: 35  SLLSSLTECKSMS---QLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           SL++ L  C S++   + +Q+H  ++R+ L       +  + +  +A    ++ A +VF 
Sbjct: 366 SLVNILPACASLAASLRGRQVHGFSIRSGLVDD--VFVGNAVVDMYAKCGKMEEANKVFQ 423

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL------------------- 132
           +++  +  +WN ++   +++   +  A+ LF+RM E+   L                   
Sbjct: 424 RMKFKDVVSWNAMVTGYSQAGRLE-HALSLFERMTEENIELDVVTWTAVITGYAQRGQGC 482

Query: 133 ---------------PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL--------VSD 169
                          P+  T    L AC  + A   GK+ H +  K  L          D
Sbjct: 483 EALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADD 542

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFR-- 225
           + + N LI  YA C   ++A K+FD++   +R +V+W VMI  + Q G+ ++AL+LF   
Sbjct: 543 LKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGM 602

Query: 226 -RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            +M    +P+ +T      ACA LA L  G   HAY+LR+   S++  + V N LIDMY 
Sbjct: 603 FKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVM--LFVANCLIDMYS 660

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K G +D A+ VF++MP+R+  SW S++ G+ +HGR E AL+ FD +  +    P+ ITF+
Sbjct: 661 KSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMR-KVPLVPDGITFL 719

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            VL AC+H GMV  G ++F+ M  ++ + P  EHY C+VDL  RAG + EA+ L++ MPM
Sbjct: 720 VVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPM 779

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +P  V+W +LL AC + H++V L E  A +++E E G   G Y LLS +YA+ARRW DV 
Sbjct: 780 EPTPVVWVALLSAC-RLHSNVELGEFAANRLLELESG-NDGSYTLLSNIYANARRWKDVA 837

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            +R  M   G+ K PGCS I+       F+ GD SHPQ++QIY  L  + +++K+ GY P
Sbjct: 838 RIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVP 897

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
             S  A+ D  D+ K   L  HSE+LA+A GIL L P  PIR+ KNLR+C DCH     I
Sbjct: 898 QTS-FALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYI 956

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S+I   EII+RD +RFHHFK+GSCSC  YW
Sbjct: 957 SKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 196/369 (53%), Gaps = 23/369 (6%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE-N 95
           +++L EC S++  K +H Q++   L     T LI + I   ++     YA  +  ++  +
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLFHLATNLIGTYIASNST----AYAILLLERLPPS 220

Query: 96  PNS-FTWNTLIRACARSVD-AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           P+S F WN LIR   R++    P+ +    R ++     PD +TFPF  KACA L + S 
Sbjct: 221 PSSVFWWNQLIR---RALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSL 277

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSWNVMIDA 210
           G   HA + + G  S+V++ N+++  Y  CG L  A+ +FD++  R    LVSWN ++ A
Sbjct: 278 GASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSA 337

Query: 211 FVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           ++   + ++AL LF +M    L  PD  +  +I  ACA LA    G   H + +R     
Sbjct: 338 YMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS---G 394

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           LV DV V N+++DMY KCG ++ A +VF+ M  +D+ SWN+++ G++  GR E AL  F+
Sbjct: 395 LVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFE 454

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R+  EE+   + +T+  V++    RG   E  D F  M +  +   V+     LV LL+ 
Sbjct: 455 RM-TEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVT----LVSLLSA 509

Query: 389 AGNIDEALH 397
             ++   LH
Sbjct: 510 CVSVGALLH 518



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 132/286 (46%), Gaps = 17/286 (5%)

Query: 137 TFPF-ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T P  ALK C  L   +  K  H     +GL+   ++  +LI  Y +      A  + + 
Sbjct: 162 TIPITALKECNSL---AHAKLLHQQSIMQGLL--FHLATNLIGTYIASNSTAYAILLLER 216

Query: 196 MLER--SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           +     S+  WN +I   +  G       L+R+M+ L + PD YTF  +  ACA L++LS
Sbjct: 217 LPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLS 276

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNS 309
           LG   HA + R       ++V V N+++ MY KCG+L  A  +F+ +  R   DL SWNS
Sbjct: 277 LGASLHATVSRS---GFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNS 333

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           ++  +     A  AL  F ++      SP+ I+ V +L AC        GR      I  
Sbjct: 334 VVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS 393

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +  V      +VD+ A+ G ++EA  +   M  K D V W +++
Sbjct: 394 GLVDDVFVG-NAVVDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMV 437


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 332/615 (53%), Gaps = 50/615 (8%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL ++    S + ++ +HA  ++  + +     +  S +  +A+  D   A  +  + E 
Sbjct: 49  LLKAVARGSSAAPVRAVHAHVVKFGMGRNAH--VATSLVTAYAAGGDGAAARALLSERER 106

Query: 96  PNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA-F 151
                WN LI     C R      +A   F  M   G   P   T+   L AC       
Sbjct: 107 DTPVVWNALISGHNRCRRF----GEACCSFVDMARAGAA-PTPVTYVSVLSACGKGTGDV 161

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---------------------------- 183
             G Q H  +   G++ D+ + N+L+  YA C                            
Sbjct: 162 LLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGL 221

Query: 184 ---GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
              G +D A  +F  M ER  VSW  MID +VQ   F  AL++FR MQ      D +T  
Sbjct: 222 TRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMV 281

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+ +ACA L  L +G W   Y+ R     +  D  V N+LIDMY KCGS++ A  VF+ M
Sbjct: 282 SVITACAQLGALEMGEWVRVYMSRQ---GIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
             RD  +W +IILG A++G  E A++ F R++   S +P+ +TF+GVL+AC H G+V +G
Sbjct: 339 HHRDKFTWTAIILGLAVNGYGEEAIEMFHRMI-GVSETPDEVTFIGVLTACTHAGLVDKG 397

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
           R++F  M   YNI P + HYGC++DL  RAG I EAL  +  MPM P++ IW +LL A C
Sbjct: 398 REFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLL-AAC 456

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H +  + E V +++++ +    S VY LLS +YA   RW DV  +R  + +KG+ KEP
Sbjct: 457 RVHGNSEIGELVTERLLQMDPE-NSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEP 515

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           GCS IE++GI HEF AGD SHP +K+IY  L+ I   L + GY PD ++  +    ++ K
Sbjct: 516 GCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEE-K 574

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           Q  L  HSE+LAIA  +L+ +P   IR+ KNLR+C DCH   KLISR++  E++VRDR R
Sbjct: 575 QKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTR 634

Query: 600 FHHFKDGSCSCMDYW 614
           FHHF+ G CSC DYW
Sbjct: 635 FHHFRHGFCSCKDYW 649



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 40/337 (11%)

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
           V A+  A+  + RM+ +G  +PD +TFP  LKA A   + +  +  HAH+ K G+  + +
Sbjct: 21  VAAREDAVAGYARMLARG-AMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAH 79

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QIL 230
           +  SL+  YA+ G    A  +       + V WN +I    +   F  A   F  M +  
Sbjct: 80  VATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAG 139

Query: 231 FEPDGYTFQSITSACA-GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC--- 286
             P   T+ S+ SAC  G   + LGM  H  ++      ++ D+ V N+L+DMY +C   
Sbjct: 140 AAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVV---GSGVLPDLRVENALVDMYAECADM 196

Query: 287 ----------------------------GSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
                                       G +D AR +F  MP+RD  SW ++I G+    
Sbjct: 197 ESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAA 256

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
           R   AL+ F R +   + S +  T V V++AC   G +  G ++  V ++   I      
Sbjct: 257 RFREALEMF-REMQCSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFV 314

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              L+D+ ++ G+I+ AL +  +M  + D   W +++
Sbjct: 315 GNALIDMYSKCGSIERALDVFKDMHHR-DKFTWTAII 350


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 334/603 (55%), Gaps = 31/603 (5%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +  S+L  C  +  L   +++HA  L+ A      + +  + +  +A    +  A RVF 
Sbjct: 284 TFASALPACSRLEMLALGREMHAVVLKDA-DLAANSFVASALVDMYAGNEKVASARRVFD 342

Query: 92  QIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            +  P+     WN +I   A++     +A+ LF RM  +    P + T    L ACA   
Sbjct: 343 MVPEPSRQLGMWNAMICGYAQA-GMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSE 401

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            F+  +  H ++ KRG+  + ++ N+L+  YA  G +D+A ++F  +  R +VSWN +I 
Sbjct: 402 GFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLIT 461

Query: 210 AFVQFGEFDSALKLFRRMQILFE-----------------PDGYTFQSITSACAGLATLS 252
             V  G    A +L   MQ+                    P+  T  ++   CA LA  +
Sbjct: 462 GCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPA 521

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H Y +RH   +L +D+ V ++L+DMY KCG L  +R VF+ +P+R++ +WN +I+
Sbjct: 522 RGKEIHGYAVRH---ALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIM 578

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            + +HG  + A+  FD +      +PN +TF+  L+AC+H G+V  G + F  M  ++ +
Sbjct: 579 AYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGV 638

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            P  + + C+VD+L RAG +DEA  ++++M P +     W SLL A C+ H +V L E  
Sbjct: 639 KPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGA-CRLHRNVELGEVA 697

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+++ E E G  S  YVLL  +Y++A  W+    VR  M  +GV KEPGCS IE+DG  H
Sbjct: 698 AERLFELEPGEASH-YVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIH 756

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F AG++SHP + +++  +D + E+++  GY PD S   + D  +D K + LR HSE+LA
Sbjct: 757 RFMAGESSHPASAEVHAHMDALWERMRREGYAPDTS-CVLHDVDEDEKAAMLRYHSEKLA 815

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA G+L   PG  IRV KNLRVC DCHE  K +S++   +I++RD  RFHHF+DGSCSC 
Sbjct: 816 IAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCG 875

Query: 612 DYW 614
           DYW
Sbjct: 876 DYW 878



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 184/397 (46%), Gaps = 35/397 (8%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFA--SFADLDYAFRVFYQIENPNSFTWNTLI---- 105
           +HA ALR AL  +    +  + +  +A     D   A       E  ++ ++N+LI    
Sbjct: 85  LHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALC 144

Query: 106 --RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ---GKQAHAH 160
             R   R++DA        + M+ +G       T    L AC++L        G++AHA 
Sbjct: 145 LFRQWERALDA-------LRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAF 197

Query: 161 IFKRGLVSD---VYINNSLIHFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAF 211
             KRG + +    +  N+L+  YA  G +D A  +F             +V+WN MI   
Sbjct: 198 ALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLL 257

Query: 212 VQFGEFDSALK-LFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           VQ G    A++ L+  + +   PDG TF S   AC+ L  L+LG   HA +L+  D  L 
Sbjct: 258 VQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDAD--LA 315

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALKYFD 328
            +  V ++L+DMY     +  AR+VF+ +P+  R L  WN++I G+A  G  E AL+ F 
Sbjct: 316 ANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFS 375

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R+  E   +P+  T  GVL AC  R     G++     + +  +         L+D+ AR
Sbjct: 376 RMEAEAGCAPSETTMSGVLPACA-RSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYAR 434

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDAC-CKKHAS 424
            G +D A  + + +  + D V W +L+  C  + HA+
Sbjct: 435 LGEMDVARRIFAMIDPR-DVVSWNTLITGCVVQGHAA 470


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/582 (37%), Positives = 335/582 (57%), Gaps = 12/582 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L + +  K++ + +Q+HA  L++    +    +  + I  +A+   +  A  VF  +
Sbjct: 125 SSVLKACSRMKALREGEQVHALILKSGF--KSNEFVENTLIQMYANCGQIGVARHVFDGM 182

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +   WN+++    ++     + + LF++++E   +  D  T    L AC  L     
Sbjct: 183 PERSIVAWNSMLSGYTKN-GLWDEVVKLFRKILEL-RIEFDDVTMISVLMACGRLANLEI 240

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+    +I  +GL  +  +  SLI  YA CG +D A K+FD M +R +V+W+ MI  + Q
Sbjct: 241 GELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQ 300

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                 AL LF  MQ     P+  T  S+  +CA L     G W H YI +     +   
Sbjct: 301 ADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK---KMKLT 357

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V +   LID Y KCG +D + +VF+ M  +++ +W ++I G A +G  + AL++F  ++ 
Sbjct: 358 VTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSML- 416

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           E    PN +TF+GVLSAC+H  +V +GR  F+ M  +++I P +EHYGC+VD+L RAG +
Sbjct: 417 ENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFL 476

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           +EA   + NMP  P+AV+WR+LL A C+ H ++ ++E+  + +   E    SG Y+LLS 
Sbjct: 477 EEAYQFIDNMPFPPNAVVWRTLL-ASCRAHKNIEMAEKSLEHITRLEPA-HSGDYILLSN 534

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
            YA   R  D   VR L+ +K + K PGCS IE+DG+ HEFF+ D  H  +K+I+  LD 
Sbjct: 535 TYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDK 594

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           + +++K  GY P+   A +  E ++ K++S+  HSE+LAIA G++   P   IR+ KNLR
Sbjct: 595 MMKQIKRLGYVPNTDDARLEAE-EESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLR 653

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +C+DCH  TK IS++F   IIVRDR RFHHFKDG CSC DYW
Sbjct: 654 MCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 215/393 (54%), Gaps = 23/393 (5%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFR 88
           N  SL+  L +CK+   L+Q+HA  L+T   ++    +I   ++  A+      +DYA  
Sbjct: 22  NPKSLI--LQQCKTPKDLQQVHAHLLKT---RRLLDPIITEAVLESAALLLPDTIDYALS 76

Query: 89  VFYQIENPNSFTWNTLIRACA--RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
           +F  I+ P S  +N +IR  A  RS D    A++LF++M E+ +V  DK TF   LKAC+
Sbjct: 77  IFNHIDKPESSAYNVMIRGLAFKRSPD---NALLLFKKMHEK-SVQHDKFTFSSVLKACS 132

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            + A  +G+Q HA I K G  S+ ++ N+LI  YA+CG + +A  VFD M ERS+V+WN 
Sbjct: 133 RMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNS 192

Query: 207 MIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           M+  + + G +D  +KLFR+ +++  E D  T  S+  AC  LA L +G     YI+   
Sbjct: 193 MLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV--- 249

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              L  +  +  SLIDMY KCG +D AR++F+ M KRD+ +W+++I G+A   R + AL 
Sbjct: 250 SKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALN 309

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR-DYFDVMINEYNITPVLEHYGCLVD 384
            F  +  + +  PN +T V VL +C   G    G+  +F +   +  +T  L     L+D
Sbjct: 310 LFHEM-QKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ--LID 366

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             A+ G ID ++ +   M  K +   W +L+  
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQG 398


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 338/602 (56%), Gaps = 20/602 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQ---HKTLLIYSRI 74
           +N+ R  G   ++ +L+S+L+ C S+  +   +Q H + ++  L        TLL     
Sbjct: 192 YNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLAL--- 248

Query: 75  IHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
             +A  + L    +VF  +   +  +WNT+I A A S  +  +AI +F  M+  G   P+
Sbjct: 249 --YAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAG-WSPN 305

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + TF   L   + L       Q HA I K  +  D  I N+L+  Y   G ++   ++F 
Sbjct: 306 RVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFS 365

Query: 195 NMLER-SLVSWNVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLS 252
            M ER   VSWN MI  ++       A+ L +  MQ     D +TF ++ SACA +ATL 
Sbjct: 366 RMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLE 425

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            GM  HA  +R C   L +DV++ ++L+DMY KCG +D A + F  MP R+L SWNS+I 
Sbjct: 426 CGMEVHACAIRAC---LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMIS 482

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A HG  + AL+ F R+ +     P+ ITFVGVLSAC+H G+V EG +YF  M   Y +
Sbjct: 483 GYARHGHGDNALRLFTRMKLSGQL-PDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGL 541

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P +EHY C+VDLL RAG +D+  + ++ MP+KP+ +IWR++L ACC+ +         A
Sbjct: 542 VPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRA 601

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            +++ +     +  YVLLS +YAS  +W D+   R+ M +  V KE GCS + +    H 
Sbjct: 602 AEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHV 661

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F AGD SHP+   IY  L  +D+K++  GY P   + A+ D   + K+  L  HSE+LA+
Sbjct: 662 FVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQI-KFALYDLEPENKEELLSYHSEKLAV 720

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A  +L    G+PIR+ KNLRVC DCH   K IS++ +  I++RD  RFHHF+DG CSC D
Sbjct: 721 AF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRD 779

Query: 613 YW 614
           YW
Sbjct: 780 YW 781



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 196/432 (45%), Gaps = 47/432 (10%)

Query: 27  EGSFNNHSSLLSSLTECK-SM---SQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD 82
           EG   N  +  S++  C+ SM    + +Q+H  A+RT L    K  +    I  +A   D
Sbjct: 95  EGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGL-NDAKVAVGNGLINMYAKCGD 153

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D+A  VF  + + +S +WN++I    ++      A+  +  M + G ++P       AL
Sbjct: 154 IDHARSVFGLMVDKDSVSWNSMITGLDQN-KCFEDAVKSYNSMRKTG-LMPSNFALISAL 211

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            +CA L     G+Q H    K GL  DV ++N+L+  YA    L    KVF  MLER  V
Sbjct: 212 SSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQV 271

Query: 203 SWNVMIDAFVQFG-EFDSALKLF-RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           SWN +I A    G     A+++F   M+  + P+  TF ++ +  + L+T  L    HA 
Sbjct: 272 SWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHAL 331

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGR 319
           IL+   +++  D  + N+L+  Y K G ++   ++F  M  +RD  SWNS+I G+ +H  
Sbjct: 332 ILK---YNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGY-IHNE 387

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF----------DVMINE 369
                     L+++     +  TF  VLSAC     +  G +            DV+I  
Sbjct: 388 LLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGS 447

Query: 370 ------------------YNITPV--LEHYGCLVDLLARAGNIDEALHLVSNMPMK---P 406
                             +N+ PV  L  +  ++   AR G+ D AL L + M +    P
Sbjct: 448 ALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLP 507

Query: 407 DAVIWRSLLDAC 418
           D + +  +L AC
Sbjct: 508 DHITFVGVLSAC 519



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H ++ K G  SD+++ N+LI+ Y   G    A K+FD M +R+ V+W  +I  + Q G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 218 DSALKLFRRMQILFE---PDGYTFQSITSAC-AGLATLSLGMWAHAYILRHCDHSLVTDV 273
           + A  + + M  +FE   P+ + F S   AC   +     G   H Y +R   +     V
Sbjct: 83  EDACGVLKEM--IFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLND--AKV 138

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N LI+MY KCG +D AR VF  M  +D  SWNS+I G   +   E A+K ++ +  +
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSM-RK 197

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P++   +  LS+C   G +  G+      I +  +   +     L+ L A    + 
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGI-KLGLDMDVSVSNTLLALYAETSRLA 256

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           E   + S M ++ D V W +++ A     ASV  + EV  +++ +
Sbjct: 257 ECQKVFSWM-LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRA 300



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
           A+ + L    H   +D+ + N+LI++Y + G    AR++F+ MP R+  +W  +I G+  
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQ 78

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV-SEGRDYFDVMINE-YNITP 374
           +G  E A      ++  E F PN   F   + AC    +   +GR      I    N   
Sbjct: 79  NGMPEDACGVLKEMIF-EGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V    G L+++ A+ G+ID A  +   M  K D+V W S++
Sbjct: 138 VAVGNG-LINMYAKCGDIDHARSVFGLMVDK-DSVSWNSMI 176


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/582 (38%), Positives = 340/582 (58%), Gaps = 10/582 (1%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLL  L +  ++ Q   IHA  LR  L Q  + +LI + ++  +A    L YA RVF+ +
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N  TW+ LI       D   +A  LF+ M+ +G       +   AL+ CA L     
Sbjct: 267 PVRNDVTWSALIGGFVL-CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q HA I K G+ +D+  +NSL+  YA  G ++ A   FD +  +  +S+  ++   VQ
Sbjct: 326 GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQ 385

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+ + A  +F++MQ    EPD  T  S+  AC+ LA L  G  +H  ++      L  +
Sbjct: 386 NGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI---IRGLALE 442

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + NSLIDMY KCG +D++RQVF+ MP RD+ SWN++I G+ +HG  + A   F  +  
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMK- 501

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            + F+P+ +TF+ +++AC+H G+V+EG+ +FD M ++Y I P +EHY C+VDLLAR G +
Sbjct: 502 NQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLL 561

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           DEA   + +MP+K D  +W +LL A C+ H ++ L ++V++ +I+  G   +G +VLLS 
Sbjct: 562 DEAYQFIQSMPLKADVRVWGALLGA-CRIHKNIDLGKQVSR-IIQKLGPEGTGNFVLLSN 619

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           ++++A R+++   VR +   KG  K PG S IEI+G  H F  GD SHP ++ IY  LD 
Sbjct: 620 IFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDN 679

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           I   +K  GY  D S   + D  ++ K+ +L  HSE+LAIA G+L+L     I V KNLR
Sbjct: 680 IMVDIKKLGYQADTS-FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLR 738

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   K ++ + N  IIVRD  RFHHFK+G CSC ++W
Sbjct: 739 VCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 163/344 (47%), Gaps = 6/344 (1%)

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           S   L  A +VF +I  P++  +N LIRA +  +     AI L++ M+ +  V P+K+TF
Sbjct: 46  SRGQLALARQVFDRIPAPDARAYNALIRAYSW-LGPFHAAIDLYRSML-RFRVAPNKYTF 103

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
           PF LKAC+ L     G+  HAH    GL +D++++ +LI  Y  C     A  VF  M  
Sbjct: 104 PFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM 163

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMW 256
           R +V+WN M+  +   G +  A+     MQ      P+  T  S+    A    L  G  
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HAY LR C       VL+  +L+DMY KC  L  A +VF  MP R+  +W+++I GF L
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVL 283

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
             R   A   F  ++VE     ++ +    L  C     +  G      +I +  I   L
Sbjct: 284 CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADL 342

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                L+ + A+AG I+EA      + +K D + + +LL  C +
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQ 385



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           LP  H  PF+    A L     G  ++        V D       +  + S G L LA +
Sbjct: 3   LPRGHLRPFSAATAARLHRPPSGSISYE-------VKDKKQWQQELEQHISRGQLALARQ 55

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           VFD +      ++N +I A+   G F +A+ L+R M +    P+ YTF  +  AC+ L  
Sbjct: 56  VFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVD 115

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G              L TD+ V+ +LID+Y +C     AR VF  MP RD+ +WN++
Sbjct: 116 LRAG---RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAM 172

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           + G+A HG    A+ +   +       PN+ T V +L      G + +G       I+ Y
Sbjct: 173 LAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS-----IHAY 227

Query: 371 NITPVLEHY-------GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +   LE           L+D+ A+   +  A  +   MP++ D V W +L+
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALI 278


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/519 (40%), Positives = 321/519 (61%), Gaps = 10/519 (1%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           NS   N++IR     ++    ++ +F  M  + ++LPD  TFP  LKA A L     GK 
Sbjct: 53  NSQQCNSMIRT-YLDLNKHLNSLYIFALM-HKFSILPDSSTFPAVLKATAQLCDTGVGKM 110

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H  + + G + DVY + +L+H Y +C  +  A+++FD M ER+ V+WN +I  +    +
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRK 170

Query: 217 FDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           F  A+  FR M     +P   T   + SAC+ L   + G W H +I  +    L  +V V
Sbjct: 171 FVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHN---RLRLNVFV 227

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             +LIDMY KCG++    +VFE + ++++ +WN +I G+A++G+ +AAL+ F R+++E +
Sbjct: 228 GTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLME-N 286

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           F P+ +TF+GVL AC H+G+V+EGR  F  M  ++ + P +EHYGC+VDLL RAG ++EA
Sbjct: 287 FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEA 346

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           L L+ +M ++PD +IWR+LL A C+ H +  L E + K++IE E       YVLLS +Y+
Sbjct: 347 LELIQSMSIEPDPIIWRALLCA-CRVHGNTKLGEYIIKRLIELEPNNGEN-YVLLSNIYS 404

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
             RRW +VG +R +M+ +G+ K PGCSSIEI+ + +EF A +   P+ + IY  LD + +
Sbjct: 405 RERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIK 464

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           KLK  GY    +  A+ D   + K+ S+  HSE+LA+A G+LN      +R+ KNLR+C 
Sbjct: 465 KLKENGYVTG-TDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICL 523

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCHE  K++S ++   I+VRDR RFHHF +G CSC DYW
Sbjct: 524 DCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 38/171 (22%)

Query: 88  RVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           +VF +I   N +TWN LI   A +   DA  QA   F RM+ + N  PD+ TF   L AC
Sbjct: 246 KVFEEIREKNVYTWNVLISGYAMNGQGDAALQA---FSRMLME-NFKPDEVTFLGVLCAC 301

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
            +                +GLV++              G     +      L+  +  + 
Sbjct: 302 CH----------------QGLVTE--------------GRWQFMSMKQQFGLQPRIEHYG 331

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
            M+D   + G  + AL+L + M I  EPD   ++++  AC       LG +
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSI--EPDPIIWRALLCACRVHGNTKLGEY 380


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/548 (40%), Positives = 328/548 (59%), Gaps = 15/548 (2%)

Query: 64  QHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           Q    L+   I  +  F  L+ A ++F Q+   N  +W T+I A ++      +A+ L  
Sbjct: 45  QPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK-CKIHQKALELLV 103

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            M+  G V P+ +T+   L+AC      S  +  H  I K GL SDVY+ ++LI  +A  
Sbjct: 104 LMLRDG-VRPNVYTYSSVLRACN---GMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKL 159

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           G  + A  VFD M+    + WN +I  F Q    D AL+LF+RM+   F  +  T  S+ 
Sbjct: 160 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVL 219

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            AC GLA L LGM AH +I+++       D+++NN+L+DMYCKCGSL+ AR+VF  M +R
Sbjct: 220 RACTGLALLELGMQAHVHIVKY-----DQDLILNNALVDMYCKCGSLEDARRVFNQMKER 274

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           D+ +W+++I G A +G ++ ALK F+ L+      PN IT VGVL AC+H G++ +G  Y
Sbjct: 275 DVITWSTMISGLAQNGYSQEALKLFE-LMKSSGTKPNYITIVGVLFACSHAGLLEDGWYY 333

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F  M   Y I P  EHYGC++DLL +AG +D+A+ L++ M  +PDAV WR+LL A C+  
Sbjct: 334 FRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA-CRVQ 392

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
            ++VL+E  AK+VI  +    +G Y +LS +YA++++W+ V  +RK M D G+ KEPGCS
Sbjct: 393 RNMVLAEYAAKKVIALDPED-AGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCS 451

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
            IE++   H F  GD SHPQ  ++   L+ +  +L   GY P+ +   + D   +  + S
Sbjct: 452 WIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPE-TNFVLQDLEGEQMEDS 510

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           LR HSE+LA+A G++ L     IR+ KNLR+C DCH   KL S++ N  I++RD  R+HH
Sbjct: 511 LRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHH 570

Query: 603 FKDGSCSC 610
           F+DG CSC
Sbjct: 571 FQDGKCSC 578



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 12/285 (4%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  T+   +K C    A  +G     H++  G    +++ N LI+ Y     L+ A+++F
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D M +R+++SW  MI A+ +      AL+L   M +    P+ YT+ S+  AC G++ + 
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVR 131

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           +    H  I++     L +DV V ++LID++ K G  + A  VF+ M   D   WNSII 
Sbjct: 132 M---LHCGIIK---EGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG 185

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           GFA + R++ AL+ F R+     F     T   VL AC    ++  G     V I +Y+ 
Sbjct: 186 GFAQNSRSDVALELFKRM-KRAGFIAEQATLTSVLRACTGLALLELGMQAH-VHIVKYDQ 243

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             +L +   LVD+  + G++++A  + + M  + D + W +++  
Sbjct: 244 DLILNN--ALVDMYCKCGSLEDARRVFNQMKER-DVITWSTMISG 285


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/533 (42%), Positives = 311/533 (58%), Gaps = 43/533 (8%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV-SDVYINNSL 176
           A+ LF  ++  G   PD   +  A  +CA     +   Q HAH  KRGLV S   +   L
Sbjct: 59  ALRLFDHLLRSG-ADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRL 117

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ----------------------- 213
           +H YA CG L  A +VFD   +  +V+WN ++  + Q                       
Sbjct: 118 VHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSW 177

Query: 214 ---------FGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYIL 262
                     GE+D A+ +FR M    E  PD  T  S+ SA A L  L+ G+WAHAY+ 
Sbjct: 178 NTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVF 237

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
           R C   +  +  ++++LI+MY KCG ++ A  VF+++  KR L +WN+++ GF  +G +E
Sbjct: 238 RKC---IEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSE 294

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F R+       PN ITF  VL+AC+H G+V EG  YF  M   Y I P + HYGC
Sbjct: 295 RALELFTRME-STRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGC 353

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VDL  RAG  ++A  ++  MPM+PDA + ++LL AC + H ++ L ++V  ++IE+   
Sbjct: 354 MVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGAC-RTHKNLELGKKVGHRLIEAAAN 412

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             +G YVLLS +YA    W  V  VRKLM D+GV K PG SS+E++G+ HEF +GD SH 
Sbjct: 413 DHAG-YVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHS 471

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           + + IY  L  I ++LKS GYTPD SQ  +  + +D K+SSL LHSE+LAIA G+++  P
Sbjct: 472 RKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAP 531

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G PIRV  NLR+C DCH   KLIS+I+   IIVRD  RFHHF+ GSCSC DYW
Sbjct: 532 GTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            D D     F ++ + +S +WNT++  C  + +   +AI +F+ M+      PD+ T   
Sbjct: 157 GDEDLLRDFFARMPSRDSVSWNTVLSWCVVNGEYD-EAIAVFREMLASQECQPDRVTLVS 215

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LER 199
            + A AYL A + G  AHA++F++ +  +  ++++LI+ Y+ CG ++ A  VFDN+  +R
Sbjct: 216 VVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKR 275

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           SL +WN M+  F   G  + AL+LF RM+     P+  TF ++ +AC+    +  GM   
Sbjct: 276 SLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYF 335

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA-LH 317
             + R   + +  D+     ++D++C+ G  + A ++ ++MP     S    +LG    H
Sbjct: 336 QRMSRF--YGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTH 393

Query: 318 GRAEAALKYFDRLV 331
              E   K   RL+
Sbjct: 394 KNLELGKKVGHRLI 407


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/599 (37%), Positives = 346/599 (57%), Gaps = 14/599 (2%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQH-KTLLIYSRIIH- 76
           S+++   +EG   + S+    L  C     L+    +  R A+ Q +   + + + +++ 
Sbjct: 91  SLYHRMASEGVRPDSSTYTVVLKACTRSLDLRS-GEETWRQAVDQGYGDDVFVGAAVLNL 149

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    +D A RVF ++   +   W T+I   A++  A+ +A+ ++++M  +  V  D  
Sbjct: 150 YAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAR-EAVDIYRQM-HKKRVEGDGV 207

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                ++AC  L     G   H ++ ++ ++ DV +  SL+  YA  GHL+LA+ VF  M
Sbjct: 208 VMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRM 267

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
           L ++++SW+ +I  F Q G   +AL+L   MQ   ++PD  +  S+  AC+ +  L LG 
Sbjct: 268 LYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGK 327

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H YI+R     L  D + + ++IDMY KCGSL  AR VF+ +  RD  SWN+II  + 
Sbjct: 328 SVHGYIVRR----LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYG 383

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           +HG  E AL  F ++  E +  P+  TF  +LSA +H G+V +GR +F +M+NEY I P 
Sbjct: 384 IHGSGEEALSLFLQMR-ETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPS 442

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            +HY C+VDLL+RAG ++EA  L+ +M  +P   IW +LL  C   H   ++ E  AK+V
Sbjct: 443 EKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLN-HGKFLIGEMAAKKV 501

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           +E       G+Y L+S  +A+ARRW++V  VRK+M   G+ K PG S +E++G  H F  
Sbjct: 502 LELNPDD-PGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLM 560

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D SH Q ++I   L  +D ++K+ GY P  ++  + +  ++ K+  L  HSERLAIA G
Sbjct: 561 EDKSHHQYEEIMQVLGKLDYEMKAMGYVPK-TEFVLHNLEEEVKERMLCNHSERLAIAFG 619

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +LN  PG  + + KNLRVC DCHE TK IS+I N EI+VRD  RFHHFKDG CSC DYW
Sbjct: 620 LLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           + HA +   G+      N  LI  YA  GH++ A +VFD   +  + +WN MI A+ + G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVTD 272
               AL L+ RM      PD  T+  +  AC     L  G   W  A      D     D
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQA-----VDQGYGDD 139

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V  +++++Y KCG +D A +VF+ M +RDL  W ++I G A +G+A  A+  + R + 
Sbjct: 140 VFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIY-RQMH 198

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           ++    + +  +G++ AC   G    G      MI +  I  V+     LVD+ A+ G++
Sbjct: 199 KKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTS-LVDMYAKNGHL 257

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDA 417
           + A  +   M  K + + W +L+  
Sbjct: 258 ELASCVFRRMLYK-NVISWSALISG 281


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/582 (38%), Positives = 340/582 (58%), Gaps = 10/582 (1%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLL  L +  ++ Q   IHA  LR  L Q  + +LI + ++  +A    L YA RVF+ +
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N  TW+ LI       D   +A  LF+ M+ +G       +   AL+ CA L     
Sbjct: 267 PVRNDVTWSALIGGFVL-CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q HA I K G+ +D+  +NSL+  YA  G ++ A   FD +  +  +S+  ++   VQ
Sbjct: 326 GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQ 385

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+ + A  +F++MQ    EPD  T  S+  AC+ LA L  G  +H  ++      L  +
Sbjct: 386 NGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI---IRGLALE 442

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + NSLIDMY KCG +D++RQVF+ MP RD+ SWN++I G+ +HG  + A   F  +  
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMK- 501

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            + F+P+ +TF+ +++AC+H G+V+EG+ +FD M ++Y I P +EHY C+VDLLAR G +
Sbjct: 502 NQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLL 561

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           DEA   + +MP+K D  +W +LL A C+ H ++ L ++V++ +I+  G   +G +VLLS 
Sbjct: 562 DEAYQFIQSMPLKADVRVWGALLGA-CRIHKNIDLGKQVSR-IIQKLGPEGTGNFVLLSN 619

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           ++++A R+++   VR +   KG  K PG S IEI+G  H F  GD SHP ++ IY  LD 
Sbjct: 620 IFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDN 679

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           I   +K  GY  D S   + D  ++ K+ +L  HSE+LAIA G+L+L     I V KNLR
Sbjct: 680 IMVDIKKLGYQADTS-FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLR 738

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   K ++ + N  IIVRD  RFHHFK+G CSC ++W
Sbjct: 739 VCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 163/344 (47%), Gaps = 6/344 (1%)

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           S   L  A +VF +I  P++  +N LIRA +  +     AI L++ M+ +  V P+K+TF
Sbjct: 46  SRGQLALARQVFDRIPAPDARAYNALIRAYS-WLGPFHAAIDLYRSML-RFRVAPNKYTF 103

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
           PF LKAC+ L     G+  HAH    GL +D++++ +LI  Y  C     A  VF  M  
Sbjct: 104 PFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM 163

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMW 256
           R +V+WN M+  +   G +  A+     MQ      P+  T  S+    A    L  G  
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HAY LR C       VL+  +L+DMY KC  L  A +VF  MP R+  +W+++I GF L
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVL 283

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
             R   A   F  ++VE     ++ +    L  C     +  G      +I +  I   L
Sbjct: 284 CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADL 342

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                L+ + A+AG I+EA      + +K D + + +LL  C +
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQ 385



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           LP  H  PF+    A L     G  ++        V D       +  + S G L LA +
Sbjct: 3   LPRGHLRPFSAATAARLHRPPSGSISYE-------VKDKKQWQQELEQHISRGQLALARQ 55

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           VFD +      ++N +I A+   G F +A+ L+R M +    P+ YTF  +  AC+ L  
Sbjct: 56  VFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVD 115

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G              L TD+ V+ +LID+Y +C     AR VF  MP RD+ +WN++
Sbjct: 116 LRAG---RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAM 172

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           + G+A HG    A+ +   +       PN+ T V +L      G + +G       I+ Y
Sbjct: 173 LAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG-----TSIHAY 227

Query: 371 NITPVLEHY-------GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +   LE           L+D+ A+   +  A  +   MP++ D V W +L+
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALI 278


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/517 (40%), Positives = 300/517 (58%), Gaps = 39/517 (7%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
           +VLPD  T  F LKAC  L     GK  H    K G  S++++ N +++ Y  CG +  A
Sbjct: 5   DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 190 NKVFDNMLERSLVSWNV-------------------------------MIDAFVQFGEFD 218
             +F+ M +R  V+WN+                               MI  FVQ G+ +
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 219 SALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            A+ LF +++     P+  T  S+ +ACA L  L LG   H Y  +        +V V N
Sbjct: 125 EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKS---GFKRNVHVCN 181

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +LIDMY KCG L+ AR+VF  M +R + SW+++I G A+HG+AE AL  F  ++ +    
Sbjct: 182 TLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMI-KLGVK 240

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           PN +TF+G+L AC+H G++ EGR +F  M  +Y + P +EHYGC+VDL +RAG ++EA  
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
            + +MP+KP+ V+W +LL  C K H ++ L+EE  K + E +  +  G YV++S +YA A
Sbjct: 301 FILSMPIKPNGVVWGALLGGC-KVHKNIDLAEEAIKHLSELDP-LNDGYYVVISNIYAEA 358

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            RW D   VRKLM D+GV K  G SSI ++G+ HEF AGD +HPQ + I    D +  K+
Sbjct: 359 ERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKM 418

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           K RGY P  S   ++D  +  K+  L  HSE+LA+  G++    G PIR+ KNLRVC+DC
Sbjct: 419 KRRGYAPKTS-VVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDC 477

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H   K+IS I + EIIVRDR RFH F+DG CSC D+W
Sbjct: 478 HAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVL 132
           I   A   D+D A+  F ++ N N  +W ++I    +    KP +AI LF ++ E   V 
Sbjct: 83  IAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC--GKPNEAIDLFMKL-EDEAVR 139

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P++ T    L ACA L     G+  H +  K G   +V++ N+LI  Y  CG L+ A +V
Sbjct: 140 PNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRV 199

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
           F  M ER++VSW+ MI      G+ + AL LF  M ++  +P+G TF  +  AC+ +  +
Sbjct: 200 FYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLI 259

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSI 310
             G    A +    D+ ++  +     ++D++ + G L+ A +   SMP K +   W ++
Sbjct: 260 DEGRRFFASMT--ADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGAL 317

Query: 311 ILGFALHGR---AEAALKYFDRL 330
           + G  +H     AE A+K+   L
Sbjct: 318 LGGCKVHKNIDLAEEAIKHLSEL 340



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 15/243 (6%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M    VQ G P     +  +F    +E    N  +++S L  C  +  L   + +H  + 
Sbjct: 113 MISGFVQCGKPN---EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYST 169

Query: 58  RTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ 117
           ++    +    +  + I  +     L+ A RVFY++E     +W+ +I   A    A+ +
Sbjct: 170 KSGF--KRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAE-E 226

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSL 176
           A+ LF  MI+ G V P+  TF   L AC+++    +G++  A +    G++  +     +
Sbjct: 227 ALCLFSEMIKLG-VKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCV 285

Query: 177 IHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-- 233
           +  ++  G L+ A++   +M ++ + V W  ++         D A +  + +  L +P  
Sbjct: 286 VDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSEL-DPLN 344

Query: 234 DGY 236
           DGY
Sbjct: 345 DGY 347


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 341/618 (55%), Gaps = 51/618 (8%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRVFYQIE 94
           LL+S     S+    ++H+  ++         L + + +IH  S F +L+ A  +F +  
Sbjct: 117 LLNSCARLSSLEPGHEVHSHIIKHGFESD---LFVRNALIHLYSVFGNLNLARTLFDESL 173

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  ++NT+I+  A  V+    A+ LF  M   G +LPD+ TF      C+ L   + G
Sbjct: 174 VRDLVSYNTMIKGYAE-VNQPESALCLFGEMQNSG-ILPDEFTFVALFSVCSVLNEPNVG 231

Query: 155 KQAHAHIFK-----------RGLVSDVYINNSLIHF-----------------------Y 180
           KQ HA ++K           +  + D+Y    LI+                        Y
Sbjct: 232 KQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGY 291

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
           A CG +++A K+F++M ER ++SW  MI  + Q G+   AL+LF+ M+ L  +PD  T  
Sbjct: 292 ARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLV 351

Query: 240 SITSACAGLATLSLGM-WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
           ++ SACA L    LG    H YI    +     + ++  +++DMY KCGS+D A ++F  
Sbjct: 352 AVLSACARLGAFDLGKRLYHQYIE---NGVFNQNTILTAAVMDMYAKCGSIDSALEIFRR 408

Query: 299 MPKRDLTSW--NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           + K   T +  NS+I G A HG  E A+  F R ++     P+ +TFVGVL AC H G++
Sbjct: 409 VGKNMKTGFVFNSMIAGLAQHGLGETAITVF-RELISTGLKPDEVTFVGVLCACGHSGLI 467

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            EG+  F+ M N Y I P +EHYGC+VDLL R G ++EA  LV  MP + ++VIWR+LL 
Sbjct: 468 EEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLS 527

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           A C+ H +V + E   ++++E E       YVLLS + A A +W +   VRK+M D G+ 
Sbjct: 528 A-CRTHGNVKIGEIAGQKLLEMEAQ-HGARYVLLSNILADANQWEEARQVRKVMEDHGIR 585

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PG S IE+ G  H F A D SHPQ K+I   L  +  +LKS GY P+ +Q  M D  +
Sbjct: 586 KPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQ-VMFDIDE 644

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
           + K+S +  HSE+LA+A G++   P   IR+ KNLR+C DCH+  KL+S I+  EI VRD
Sbjct: 645 EEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRD 704

Query: 597 RARFHHFKDGSCSCMDYW 614
             RFHHF++GSCSCMD+W
Sbjct: 705 TMRFHHFRNGSCSCMDFW 722



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/405 (34%), Positives = 213/405 (52%), Gaps = 51/405 (12%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRVF 90
           S L  L  CKS  Q  QIHAQ +   L   H  +   SR+I F S       LD++  +F
Sbjct: 11  SSLCLLESCKSFKQGLQIHAQTIVNGL---HHQIFSISRLISFFSLLGSKDGLDHSRLLF 67

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            QI+ PN F WNT+IR  +RS D   +AIVL+  MI +G   P+  TFPF L +CA L +
Sbjct: 68  SQIDCPNLFMWNTMIRGYSRS-DNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSS 126

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G + H+HI K G  SD+++ N+LIH Y+  G+L+LA  +FD  L R LVS+N MI  
Sbjct: 127 LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 186

Query: 211 FVQFGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           + +  + +SAL LF  MQ   IL  PD +TF ++ S C+ L   ++G   HA + ++   
Sbjct: 187 YAEVNQPESALCLFGEMQNSGIL--PDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNL-R 243

Query: 268 SLVTDVLVNNSLIDMYCK--------------------------------CGSLDIARQV 295
           S+ +++L+ ++++DMY K                                CG +++AR++
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F  M +RD+ SW ++I G++  G+   AL+ F  +       P+ +T V VLSAC   G 
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEA-LGIKPDEVTLVAVLSACARLGA 362

Query: 356 VSEGRDYFDVMINE--YNITPVLEHYGCLVDLLARAGNIDEALHL 398
              G+  +   I    +N   +L     ++D+ A+ G+ID AL +
Sbjct: 363 FDLGKRLYHQYIENGVFNQNTILT--AAVMDMYAKCGSIDSALEI 405


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/519 (40%), Positives = 320/519 (61%), Gaps = 10/519 (1%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           NS   N++IR     ++    ++ +F  M  + ++LPD  TFP  LKA A L     GK 
Sbjct: 53  NSQQCNSMIRT-YLDLNKHLNSLYIFALM-HKFSILPDSSTFPAVLKATAQLCDTGVGKM 110

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H  + + G + DVY + +L+H Y +C  +  A+++FD M ER+ V+WN +I  +    +
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRK 170

Query: 217 FDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           F  A+  FR M     +P   T   + SAC+ L   + G W H +I  +    L  +V V
Sbjct: 171 FVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHN---RLRLNVFV 227

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             +LIDMY KCG++    +VFE + ++++ +WN +I G+A++G+ +AAL+ F R+++E +
Sbjct: 228 GTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLME-N 286

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           F P+ +TF+GVL AC H+G+V+EGR  F  M  ++ + P +EHYGC+VDLL RAG ++EA
Sbjct: 287 FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEA 346

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           L L+ +M ++PD +IWR+LL A C+ H +  L E + K++IE E       YVLLS +Y+
Sbjct: 347 LELIQSMSIEPDPIIWRALLCA-CRVHGNTKLGEYIIKRLIELEPNNGEN-YVLLSNIYS 404

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
             RRW +VG +R +M  +G+ K PGCSSIEI+ + +EF A +   P+ + IY  LD + +
Sbjct: 405 RERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIK 464

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           KLK  GY    +  A+ D   + K+ S+  HSE+LA+A G+LN      +R+ KNLR+C 
Sbjct: 465 KLKENGYVTG-TDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICL 523

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCHE  K++S ++   I+VRDR RFHHF +G CSC DYW
Sbjct: 524 DCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 38/171 (22%)

Query: 88  RVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           +VF +I   N +TWN LI   A +   DA  QA   F RM+ + N  PD+ TF   L AC
Sbjct: 246 KVFEEIREKNVYTWNVLISGYAMNGQGDAALQA---FSRMLME-NFKPDEVTFLGVLCAC 301

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
            +                +GLV++              G     +      L+  +  + 
Sbjct: 302 CH----------------QGLVTE--------------GRWQFMSMKQQFGLQPRIEHYG 331

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
            M+D   + G  + AL+L + M I  EPD   ++++  AC       LG +
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSI--EPDPIIWRALLCACRVHGNTKLGEY 380


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 348/617 (56%), Gaps = 17/617 (2%)

Query: 3    VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRT 59
            V +V  G     + S  IF   + EG   N  +  S L  C S+  L   +QIH   ++T
Sbjct: 433  VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 60   ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
                Q    +    I  +A +  L  A R+  ++   +  +W  +I    +  D   +A+
Sbjct: 493  GF--QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQH-DMFSEAL 549

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             LF+ M  +G +  D   F  A+ ACA + A  QG+Q HA  +  G  +D+ INN+LI  
Sbjct: 550  QLFEEMEYRG-IQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            YA CG +  A   F+ + +++ +SWN ++    Q G F+ AL++F RM +   E + +T+
Sbjct: 609  YARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTY 668

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             S  SA A LA +  G   H+ +L+    S   +  V+NSLI +Y K GS+  A + F  
Sbjct: 669  GSAISAAASLANIKQGQQIHSMVLKTGYDS---EREVSNSLISLYAKSGSISDAWREFND 725

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            M +R++ SWN++I G++ HG    AL+ F+ + V     PN +TFVGVLSAC+H G+V E
Sbjct: 726  MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVC-GIMPNHVTFVGVLSACSHIGLVKE 784

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G DYF+ M   +++ P  EHY C+VDLL RAG +D A+  +  MP+  DA+IWR+LL AC
Sbjct: 785  GLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSAC 844

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
               H ++ + E  A  ++E E    S  YVL+S +YA +R+W      RKLM D+GV KE
Sbjct: 845  V-IHKNIEIGERAAHHLLELEPED-SATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKE 902

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            PG S IE+    H F+AGD  HP T QIY ++  ++ +    GY  D    ++++E + G
Sbjct: 903  PGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQD--SFSLLNESEQG 960

Query: 539  KQSSL-RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            ++  +  +HSE+LAIA G+L+L   +PIRV KNLRVC DCH   K +S+I N  IIVRD 
Sbjct: 961  QKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDA 1020

Query: 598  ARFHHFKDGSCSCMDYW 614
             RFHHF  G CSC D+W
Sbjct: 1021 HRFHHFDGGVCSCKDFW 1037



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 184/387 (47%), Gaps = 15/387 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+LS+ T+ +     +Q+H   ++     +  T +    +  ++    L  A R+F  +
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGFHSE--TYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  ++N+LI    +      +A+ LF +M ++  + PD  T    L ACA + A  +
Sbjct: 323 NSRDGVSYNSLISGLVQQ-GFSDRALELFTKM-QRDCLKPDCITVASLLSACASVGALHK 380

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q H+H  K G+ +D+ +  SL+  Y+ C  ++ A+K F      ++V WNVM+ A+ Q
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQ 440

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                 + ++FR+MQ+    P+ +T+ SI   C  L  L LG   H ++++        +
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIK---TGFQLN 497

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V + LIDMY K G L +A ++   +P+ D+ SW ++I G+  H     AL+ F+ +  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY--NITPVLEHYGCLVDLLARAG 390
                 ++I F   +SAC     + +G+    +    Y       L     L+ L AR G
Sbjct: 558 -RGIQFDNIGFASAISACAGIRALRQGQ---QIHAQSYAAGFGADLSINNALISLYARCG 613

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
            I EA +L        + + W SL+  
Sbjct: 614 RIQEA-YLAFEKIGDKNNISWNSLVSG 639



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 16/393 (4%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++ N+  LL       S+ +  ++H +  ++    +   LLI S + ++    D   A +
Sbjct: 57  NYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE--PLLIDSLVDNYFRHGDQHGAVK 114

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC-AY 147
           VF +  N + F+WN +I     +  +  Q   LF+RM+ +G + P+ +TF   LKAC   
Sbjct: 115 VFDENSNRSVFSWNKMIHVFV-AQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGG 172

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
             AF+  KQ H+  F  G  S   + N LI  Y+  G+++ A KVF+ +  + +V+W  M
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232

Query: 208 IDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           I    Q G  + A+ LF  M    +F P  Y   S+ SA   +    LG   H  +++  
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIF-PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            HS   +  V N L+ +Y +   L  A ++F +M  RD  S+NS+I G    G ++ AL+
Sbjct: 292 FHS---ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVD 384
            F ++   +   P+ IT   +LSAC   G + +G       I    +   +LE  G L+D
Sbjct: 349 LFTKM-QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILE--GSLLD 405

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           L ++  +++ A H         + V+W  +L A
Sbjct: 406 LYSKCADVETA-HKFFLTTETENIVLWNVMLVA 437



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 162/338 (47%), Gaps = 17/338 (5%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A +VF  I   +  TW  +I   +++   + +AI+LF  M     + P  +     L
Sbjct: 211 IESAKKVFNCICMKDIVTWVAMISGLSQN-GLEEEAILLFCDM-HASEIFPTPYVLSSVL 268

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            A   +  F  G+Q H  + K G  S+ Y+ N L+  Y+    L  A ++F  M  R  V
Sbjct: 269 SASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           S+N +I   VQ G  D AL+LF +MQ    +PD  T  S+ SACA +  L  GM  H++ 
Sbjct: 329 SYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHA 388

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++     +  D+++  SL+D+Y KC  ++ A + F +    ++  WN +++ +       
Sbjct: 389 IK---AGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLS 445

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP--VLEHY 379
            + + F ++ + E   PN  T+  +L  C   G +     Y    I+ + I     L  Y
Sbjct: 446 DSFEIFRQMQM-EGMIPNQFTYPSILRTCTSLGAL-----YLGEQIHTHVIKTGFQLNVY 499

Query: 380 GC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            C  L+D+ A+ G +  AL ++  +P + D V W +++
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 149/368 (40%), Gaps = 63/368 (17%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           N +SF   TL          K + I L   M E+G V  +   + + L+ C    +  + 
Sbjct: 24  NSHSFDQTTL-----HMEQGKSKRIQLMNFMEERG-VRSNYQNYLWLLEGCLTSGSLFET 77

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
            + H  I K G   +  + +SL+  Y   G    A KVFD    RS+ SWN MI  FV  
Sbjct: 78  MRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQ 137

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL----RHCDHSL 269
                   LFRRM      P+GYTF  +  AC G      G  A  Y+     R   +  
Sbjct: 138 KSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG------GDIAFNYVKQVHSRTFYYGF 191

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +  LV N LID+Y K G ++ A++VF  +  +D+ +W ++I G + +G  E A+  F  
Sbjct: 192 DSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCD 251

Query: 330 LVVEESFSPNSITFVGVLSA----------------------------CN--------HR 353
           +   E F P       VLSA                            CN         R
Sbjct: 252 MHASEIF-PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSR 310

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVI 410
            ++S  R  F  M +   ++     Y  L+  L + G  D AL L + M    +KPD + 
Sbjct: 311 KLISAER-IFSTMNSRDGVS-----YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364

Query: 411 WRSLLDAC 418
             SLL AC
Sbjct: 365 VASLLSAC 372


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 346/607 (57%), Gaps = 15/607 (2%)

Query: 12  TPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY 71
           T   H   + NN   E     ++ LL   T    + Q K +H   + +    ++  ++  
Sbjct: 73  TTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKF--RNDLVIKN 130

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQG 129
           S +  +A    L+ A +VF ++   +  TW ++I   ++     +   A+VLF  M+  G
Sbjct: 131 SILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDG 190

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            + P++      +K C +L +   GKQ H   +K G   +V++ +SL+  YA CG L  +
Sbjct: 191 -LRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRES 249

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
             VFD +  ++ VSWN +I  F + GE + AL LF +MQ   F    +T+ ++  + +  
Sbjct: 250 RLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTT 309

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
            +L  G W HA++++     LV    V N+L+ MY K G++  A++VF+ + K D+ S N
Sbjct: 310 GSLEQGKWLHAHMMKS-GKKLVG--YVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCN 366

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+++G+A HG  + A++ F+ +++     PN ITF+ VL+AC+H G++ EG  YF++M  
Sbjct: 367 SMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-K 425

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           +Y + P L HY  +VDL  RAG +D+A   +  MP++P+A IW +LL A  K H +  + 
Sbjct: 426 KYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGAS-KMHKNTEMG 484

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
              A++V+E +     G + LLS +YASA +W DV  VRK M D G+ KEP CS +EI+ 
Sbjct: 485 AYAAQKVLELDP-FYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIEN 543

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA-AMVDELDDGKQSSLRLHS 547
             H F A D SHPQ  ++Y   + +++K+K  GY PD S     VD+ +  K+ +L+ HS
Sbjct: 544 SVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQE--KELNLQYHS 601

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           E+LA+A  +LN KPG  IR+ KN+RVC DCH   K +S +   EIIVRD  RFHHF+DGS
Sbjct: 602 EKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGS 661

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 662 CSCRDYW 668


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/537 (40%), Positives = 319/537 (59%), Gaps = 12/537 (2%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            D+ YA ++F ++  P  F WNT+++   ++     +A+ ++ +M   G V PD  TFPF
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKN-GIPDKAVSVYGKMRHLG-VRPDPFTFPF 140

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            +KACA L     G   H H+ K GL     +   L+  Y   G L  A  +F +M+ER 
Sbjct: 141 VIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERD 200

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           LV+WN +I   VQ G    AL+ FR M +   +PD  T  S  SAC  L  L  G   + 
Sbjct: 201 LVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE 260

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           +     +  + ++++V+N+ +DM  KCG +D A  +F+ MP+R++ SW+++I G+A++G 
Sbjct: 261 FAR---EEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGE 317

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLE 377
           +E AL  F R+   +   PN +TF+ VLSAC+H G V+EG  YF+ M   ++ NI P  E
Sbjct: 318 SEKALALFSRMK-NQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKE 376

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
           HY C+VDLL R+G+++EA + +  MP++ D  IW +LL AC   H ++ L + VA  + E
Sbjct: 377 HYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAI-HQNIKLGQHVADLLFE 435

Query: 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD 497
               I S  +VLLS +YA+A RW+ V  VR+ M  KG  K    SS+E +G  H  + GD
Sbjct: 436 LAPEIAS-YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGD 494

Query: 498 TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL 557
            SHPQ+  I   L+ + +++KS GY P+ + +   D  D+ K+S+L  HSE+LAIA  ++
Sbjct: 495 KSHPQSASILAKLEDLLKQMKSMGYIPE-TDSVFHDVEDEEKESTLSTHSEKLAIAFSLI 553

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           N  P  PIRV KNLR+C DCH   KL+SRI   EII+RD+ RFHHFK+G CSC D+W
Sbjct: 554 NGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 341/587 (58%), Gaps = 15/587 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI--YSRIIHFASFADLDYAFRVFY 91
           SS+ S+  E +++S  KQ+H+ A+R+ L    +  L+  Y++    ++   +D   +VF 
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKC---SADGSVDDCRKVFD 329

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++E+ +  +W  LI    ++ +   +AI LF  MI QG+V P+  TF  A KAC  L   
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ     FKRGL S+  + NS+I  +     ++ A + F+++ E++LVS+N  +D  
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            +   F+ A KL   + +       +TF S+ S  A + ++  G   H+ +++     L 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL---GLS 506

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V N+LI MY KCGS+D A +VF  M  R++ SW S+I GFA HG A   L+ F+++
Sbjct: 507 CNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQM 566

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           + EE   PN +T+V +LSAC+H G+VSEG  +F+ M  ++ I P +EHY C+VDLL RAG
Sbjct: 567 I-EEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAG 625

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            + +A   ++ MP + D ++WR+ L A C+ H++  L +  A++++E +       Y+ L
Sbjct: 626 LLTDAFEFINTMPFQADVLVWRTFLGA-CRVHSNTELGKLAARKILELDPNE-PAAYIQL 683

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA A +W +   +R+ M ++ + KE GCS IE+    H+F+ GDT+HP   QIY  L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL---HSERLAIALGILNLKPGMPIRV 567
           D +  ++K  GY PD        E ++ +    RL   HSE++A+A G+++     P+RV
Sbjct: 744 DRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRV 803

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           FKNLRVC DCH   K IS +   EI++RD  RFHHFKDG CSC DYW
Sbjct: 804 FKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 169/361 (46%), Gaps = 17/361 (4%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
            + A++VF ++   N  TW  +I  C + +    +AI  F  M+  G    DK T     
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQ-MGFPREAIRFFLDMVLSG-FESDKFTLSSVF 276

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNMLER 199
            ACA L   S GKQ H+   + GLV DV    SL+  YA C   G +D   KVFD M + 
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDH 334

Query: 200 SLVSWNVMIDAFVQFGEFDS-ALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMW 256
           S++SW  +I  +++     + A+ LF  M  Q   EP+ +TF S   AC  L+   +G  
Sbjct: 335 SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQ 394

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
                 +     L ++  V NS+I M+ K   ++ A++ FES+ +++L S+N+ + G   
Sbjct: 395 VLGQAFK---RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           +   E A K     + E     ++ TF  +LS   + G + +G      ++ +  ++   
Sbjct: 452 NLNFEQAFKLLSE-ITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCNQ 509

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
                L+ + ++ G+ID A  + + M  + + + W S++     KH   +   E   Q+I
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENR-NVISWTSMITG-FAKHGFAIRVLETFNQMI 567

Query: 437 E 437
           E
Sbjct: 568 E 568



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 16/294 (5%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+     M   G    D  TF   LK+C     F  GK  HA + +  +  D  + NSLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 178 HFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEP 233
             Y+  G    A  VF+ M    +R +VSW+ M+  +   G    A+K+F   +++   P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-GSLDIA 292
           + Y + ++  AC+    + +G     ++++       +DV V  SLIDM+ K   S + A
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMK--TGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
            +VF+ M + ++ +W  +I      G    A+++F  +V+   F  +  T   V SAC  
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVL-SGFESDKFTLSSVFSACAE 281

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGC-LVDLLARA---GNIDEALHLVSNM 402
              +S G+      I     + +++   C LVD+ A+    G++D+   +   M
Sbjct: 282 LENLSLGKQLHSWAIR----SGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRM 331


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 332/589 (56%), Gaps = 43/589 (7%)

Query: 59  TALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118
           + L  +  T+++ + +  +    D+  A ++F +  N N   +NT++       +     
Sbjct: 258 SELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH-EWASDV 316

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           +V+   M+++G   PDK T    + ACA L   S GK +HA++ + GL     I+N++I 
Sbjct: 317 LVILDEMLQKGP-RPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIID 375

Query: 179 FYASCGH-------------------------------LDLANKVFDNMLERSLVSWNVM 207
            Y  CG                                ++LA ++FD MLER LVSWN M
Sbjct: 376 MYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTM 435

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I A VQ   F+ A++LFR MQ    P D  T   I SAC  L  L L  W   YI ++  
Sbjct: 436 IGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDI 495

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           H    D+ +  +L+DM+ +CG    A  VF+ M KRD+++W + I   A+ G  E A++ 
Sbjct: 496 H---VDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIEL 552

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+ ++ E+   P+ + FV +L+AC+H G V +GR  F  M   + I P + HYGC+VDLL
Sbjct: 553 FNEML-EQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLL 611

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG ++EA+ L+ +MP++P+ V+W SLL A C+KH +V L+   A+++ +       G+
Sbjct: 612 GRAGLLEEAVDLIQSMPIEPNDVVWGSLL-AACRKHKNVELAHYAAEKLTQLAPERV-GI 669

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           +VLLS +YASA +W DV  VR  M +KGV K PG SSIE+ G+ HEF +GD SH +   I
Sbjct: 670 HVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
              L+ I+ +L   GY PD +   + VDE +  K+  L  HSE+LA+A G++    G+PI
Sbjct: 730 GLMLEEINCRLSEAGYVPDTTNVLLDVDEQE--KEHLLSRHSEKLAMAYGLITTGQGIPI 787

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RV KNLR+C DCH   KL+S+++N EI VRD  R+H FK+G CSC DYW
Sbjct: 788 RVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 209/395 (52%), Gaps = 26/395 (6%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAF 87
           N SS L  L  CK++ +LKQ+H   ++  L    P  +   LI S +    +   LDYA 
Sbjct: 26  NSSSKL--LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSV-QIGTLESLDYAR 82

Query: 88  RVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
             F   +    + F +N LIR  A S     QAI+L+ +M+  G ++PDK+TFPF L AC
Sbjct: 83  NAFGDDDGNMASLFMYNCLIRGYA-SAGLGDQAILLYVQMLVMG-IVPDKYTFPFLLSAC 140

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           + + A S+G Q H  + K GL  D++++NSLIHFYA CG +DL  K+FD MLER++VSW 
Sbjct: 141 SKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWT 200

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I+ +        A+ LF +M +   EP+  T   + SACA L  L LG    +YI   
Sbjct: 201 SLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI--- 257

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
            +  +    ++ N+L+DMY KCG +  ARQ+F+    ++L  +N+I+  +  H  A   L
Sbjct: 258 SELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVL 317

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----G 380
              D + +++   P+ +T +  ++AC   G +S G+       + Y +   LE +     
Sbjct: 318 VILDEM-LQKGPRPDKVTMLSTIAACAQLGDLSVGKSS-----HAYVLRNGLEGWDNISN 371

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            ++D+  + G  + A  +  +MP K   V W SL+
Sbjct: 372 AIIDMYMKCGKREAACKVFEHMPNKT-VVTWNSLI 405


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 345/586 (58%), Gaps = 21/586 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHK---TLL-IYSRIIHFASFADLDYAFRVF 90
           S+ +   + + +S  + +H   ++    ++ +   TLL +YS+        DLD A  VF
Sbjct: 301 SVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKC------GDLDSAKVVF 354

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   +  ++ ++I   AR   A  +A+ LF+ M E+G + PD +T    L  CA    
Sbjct: 355 REMSGRSVVSYTSMIAGYAREGLA-GEAVKLFEEMEEEG-ISPDVYTVTAVLNCCARNRL 412

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             +GK+ H  I +  +  D++++N+L+  YA CG +  A  VF  M  + ++SWN +I  
Sbjct: 413 LDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGG 472

Query: 211 FVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           + +    + AL LF  + +   F PD  T   +  ACA L+    G   H YI+R+    
Sbjct: 473 YSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN---G 529

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
             +D  V NSL+DMY KCG+L +AR +F+ +  +DL SW  +I G+ +HG  + A+  F+
Sbjct: 530 YFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFN 589

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           ++  +    P+ I+FV +L AC+H G+V EG  +F++M +E  I P +EHY C+VD+LAR
Sbjct: 590 QMR-QAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            GN+ +A   + NMP+ PDA IW +LL   C+ H  V L+E VA++V E E    +G YV
Sbjct: 649 TGNLSKAYRFIENMPIPPDATIWGALL-CGCRIHHDVKLAERVAEKVFELEPE-NTGYYV 706

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           L++ +YA A +W +V  +RK +  +G+ K PGCS IEI G  + F AGD+S+P+T++I  
Sbjct: 707 LMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEA 766

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           FL  +  ++   GY+P  ++ A++D  +  K+ +L  HSE+LA+ALGI++   G  IRV 
Sbjct: 767 FLRGVRARMIEEGYSP-LTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 825

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCHE+ K +S++   EI++RD  RFH FKDG CSC  +W
Sbjct: 826 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 183/349 (52%), Gaps = 13/349 (3%)

Query: 75  IHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           + + +  DL  A RVF Q++   +  WN L+   A+S D    +I LF++M+  G V  D
Sbjct: 137 LMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDF-SGSIGLFKKMMSSG-VEMD 194

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            +TF    K+ + L + + G+Q H +I K G      + NSL+ FY     +D A KVFD
Sbjct: 195 SYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFD 254

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF---EPDGYTFQSITSACAGLATL 251
            M ER ++SWN +I+ +V  G  +  L +F  +Q+LF   E D  T  S+ + CA    +
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVF--VQMLFSGIEIDLATIVSVFAGCADSRLI 312

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           SLG   H + ++ C      +    N+L+DMY KCG LD A+ VF  M  R + S+ S+I
Sbjct: 313 SLGRAVHCFGVKAC---FSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMI 369

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+A  G A  A+K F+ +  EE  SP+  T   VL+ C    ++ EG+   +  I E +
Sbjct: 370 AGYAREGLAGEAVKLFEEM-EEEGISPDVYTVTAVLNCCARNRLLDEGKRVHE-WIKEND 427

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           +   +     L+D+ A+ G++ EA  + S M +K D + W +++    K
Sbjct: 428 MGFDIFVSNALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGGYSK 475



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 171/383 (44%), Gaps = 44/383 (11%)

Query: 106 RACARSVDAKPQAIVLFQRMI-----------EQGNVLP-------------DKHTFPFA 141
           RA  R+V  +  +I  F R +           E GN+               D  T    
Sbjct: 41  RASLRTVSDRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSV 100

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L+ CA   +   GK+    I   G V D  + + L   Y +CG L  A++VFD +     
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKA 160

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           + WN++++   + G+F  ++ LF++M     E D YTF  ++ + + L +++ G   H Y
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGY 220

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           IL+           V NSL+  Y K   +D AR+VF+ M +RD+ SWNSII G+  +G A
Sbjct: 221 ILK---SGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLA 277

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL--EH 378
           E  L  F +++       +  T V V + C    ++S GR      ++ + +      E 
Sbjct: 278 EKGLSVFVQMLF-SGIEIDLATIVSVFAGCADSRLISLGR-----AVHCFGVKACFSRED 331

Query: 379 YGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
             C  L+D+ ++ G++D A  +   M  +   V + S++      +A   L+ E  K   
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRS-VVSYTSMIAG----YAREGLAGEAVKLFE 386

Query: 437 E-SEGGICSGVYVLLSRVYASAR 458
           E  E GI   VY + + +   AR
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCAR 409


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 325/581 (55%), Gaps = 30/581 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SL++       M   + +H   +R    ++ +  +  + I  +     L  A R+F ++ 
Sbjct: 194 SLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLS 253

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +W  +I  C RS      A   F RM+E+  + P++ T    +  C ++     G
Sbjct: 254 KRSVVSWTVMIAGCIRSCRLDEGAKN-FNRMLEE-KLFPNEITLLSLITECGFVGTLDLG 311

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  HA++ + G    + +  +LI  Y  CG +  A  +F+ + ++ +  W+V+I A+   
Sbjct: 312 KWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHV 371

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
              D    LF  M     +P+  T  S+ S CA    L LG W HAYI RH    L  DV
Sbjct: 372 SCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRH---GLEVDV 428

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           ++  +LI+MY KCG + IAR +F    +RD+  WN+++ GF++HG  + AL+ F  +   
Sbjct: 429 ILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEME-S 487

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               PN ITFV +  AC+H G+                    +EHYGCLVDLL RAG++D
Sbjct: 488 HGVEPNDITFVSIFHACSHSGL--------------------MEHYGCLVDLLGRAGHLD 527

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA +++ NMPM+P+ +IW +LL A CK H ++ L E  A++++E +   C G  VL S +
Sbjct: 528 EAHNIIENMPMRPNTIIWGALL-AACKLHKNLALGEVAARKILELDPQNC-GYSVLKSNI 585

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YASA+RWNDV  VR+ M+  G+ KEPG S IE+ G  H F +GD +  QT ++Y  +  +
Sbjct: 586 YASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEM 645

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
             KL+  GYTP+ + A +++  ++ K+S+L  HSE+LA A G+++  PG PIR+ KNLR+
Sbjct: 646 CIKLRESGYTPN-TAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRI 704

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH  TKL+S+I+   IIVRDR RFHHF +G CSCM YW
Sbjct: 705 CDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 141/285 (49%), Gaps = 5/285 (1%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D    P  LKACA   +   G++ H    K G  SDV++ N+L++ Y  CG L  A  VF
Sbjct: 87  DNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVF 146

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D M ER +VSW  M+  +V+   F  AL+L R MQ +  +  G    S+ +    L  + 
Sbjct: 147 DQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMK 206

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H YI+R+     + +V +  +LIDMYCK G L  A+++F+ + KR + SW  +I 
Sbjct: 207 SGRAVHGYIVRNVGDEKM-EVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIA 265

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G     R +   K F+R+ +EE   PN IT + +++ C   G +  G+ +F   +     
Sbjct: 266 GCIRSCRLDEGAKNFNRM-LEEKLFPNEITLLSLITECGFVGTLDLGK-WFHAYLLRNGF 323

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              L     L+D+  + G +  A  L + +  K D  IW  L+ A
Sbjct: 324 GMSLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISA 367



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 31/302 (10%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           FN    E  F N  +LLS +TEC  +  L   K  HA  LR          L+ + I  +
Sbjct: 280 FNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMS--LALVTALIDMY 337

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
                + YA  +F  ++  +   W+ LI A A  V    Q   LF  M+   +V P+  T
Sbjct: 338 GKCGQVGYARALFNGVKKKDVKIWSVLISAYAH-VSCMDQVFNLFVEMLNN-DVKPNNVT 395

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
               L  CA   A   GK  HA+I + GL  DV +  +LI+ YA CG + +A  +F+  +
Sbjct: 396 MVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAM 455

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           +R +  WN M+  F   G    AL+LF  M+    EP+  TF SI  AC           
Sbjct: 456 QRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHAC----------- 504

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT-SWNSIILGFA 315
           +H+ ++ H              L+D+  + G LD A  + E+MP R  T  W +++    
Sbjct: 505 SHSGLMEH-----------YGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACK 553

Query: 316 LH 317
           LH
Sbjct: 554 LH 555


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/455 (45%), Positives = 285/455 (62%), Gaps = 8/455 (1%)

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           +F +    ++ +  ++I  Y+  G ++ A  +FD M E+ LV W+ MI  + +  +   A
Sbjct: 5   LFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEA 64

Query: 221 LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           L LF  MQ+   +PD  T  S+ SACA L  L    W H Y+ ++    L   + VNN+L
Sbjct: 65  LNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKN---GLGGALPVNNAL 121

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           IDMY KCG+L  AR VFE M  R++ SW S+I  FA+HG A  ALK+F ++  +E+  PN
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMK-DENIKPN 180

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            +TFVGVL AC+H G+V EGR  F  M NE+NITP  EHYGC+VDL  RA  + +AL LV
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MP+ P+ VIW SL+ A C+ H    L E  AKQV+E E     G  V LS +YA  RR
Sbjct: 241 ETMPLAPNVVIWGSLM-AACQIHGENELGEFAAKQVLELEPD-HDGALVQLSNIYAKDRR 298

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W DVG +R LM  +G++KE GCS IE++   +EF   D  H Q  +IY  LD + ++LK 
Sbjct: 299 WQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKL 358

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GYTP+ +++ +VD  ++GK+  +  HSE+LA+  G++    G  IR+ KNLRVC+DCH 
Sbjct: 359 VGYTPN-TRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHT 417

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             KL+S+++ +EIIVRDR RFHH+K G CSC DYW
Sbjct: 418 FIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 7/270 (2%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           AQ L T +  ++  +L  + I  ++    ++ A  +F Q+E  +   W+ +I   A S D
Sbjct: 2   AQKLFTKISSRNLVVLT-AMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAES-D 59

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
              +A+ LF  M   G + PD+ T    + ACA L    + K  H ++ K GL   + +N
Sbjct: 60  KPQEALNLFSEMQVFG-IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVN 118

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
           N+LI  YA CG+L  A  VF+ M  R+++SW  MI+AF   G+  +ALK F +M+    +
Sbjct: 119 NALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIK 178

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P+G TF  +  AC+    +  G    A +    +H++         ++D++ +   L  A
Sbjct: 179 PNGVTFVGVLYACSHAGLVEEGRRTFASMTN--EHNITPKHEHYGCMVDLFGRANLLRDA 236

Query: 293 RQVFESMP-KRDLTSWNSIILGFALHGRAE 321
            ++ E+MP   ++  W S++    +HG  E
Sbjct: 237 LELVETMPLAPNVVIWGSLMAACQIHGENE 266


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 342/593 (57%), Gaps = 38/593 (6%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR------ 88
           S+L ++ + K++   + IH  A R+           +  +++  + A LD  F+      
Sbjct: 251 SILPAVADMKALRIGRSIHGYAFRSG----------FESLVNVTN-ALLDMYFKCGSARI 299

Query: 89  ---VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
              VF  + +    +WNT+I  CA++ +++ +A   F +M+++G V P + T    L AC
Sbjct: 300 ARLVFKGMRSKTVVSWNTMIDGCAQNGESE-EAFATFLKMLDEGEV-PTRVTMMGVLLAC 357

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L    +G   H  + K  L S+V + NSLI  Y+ C  +D+A  +F+N LE++ V+WN
Sbjct: 358 ANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNN-LEKTNVTWN 416

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  + Q G    AL LF  MQ    + D +T   + +A A  +      W H   +R 
Sbjct: 417 AMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRA 476

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
           C   +  +V V+ +L+DMY KCG++  AR++F+ M +R + +WN++I G+  HG  +  L
Sbjct: 477 C---MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETL 533

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F+ +  + +  PN ITF+ V+SAC+H G V EG   F  M  +Y + P ++HY  +VD
Sbjct: 534 DLFNEMQ-KGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVD 592

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE---SEGG 441
           LL RAG +D+A + +  MP+KP   +  ++L AC K H +V L E+ A+++ +    EGG
Sbjct: 593 LLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGAC-KIHKNVELGEKAAQKLFKLDPDEGG 651

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
                +VLL+ +YAS   W+ V  VR  M DKG+ K PGCS +E+    H F++G T+HP
Sbjct: 652 ----YHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHP 707

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           ++K+IY FL+ + +++K+ GY PD      V+E  D K+  L  HSERLAIA G+LN  P
Sbjct: 708 ESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEE--DVKKQLLSSHSERLAIAFGLLNTSP 765

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  + + KNLRVC DCH+ TK IS +   EIIVRD  RFHHFK+GSCSC DYW
Sbjct: 766 GTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 189/393 (48%), Gaps = 24/393 (6%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           +++ LL    E   + + ++IH   +          L + + ++  +A    +D A+++F
Sbjct: 147 DYACLLQLCGENLDLKKGREIHGLIITNGF---ESNLFVMTAVMSLYAKCRQIDNAYKMF 203

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++++ +  +W TL+   A++  AK +A+ L  +M E G   PD  T    L A A + A
Sbjct: 204 ERMQHKDLVSWTTLVAGYAQNGHAK-RALQLVLQMQEAGQK-PDSVTLVSILPAVADMKA 261

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G+  H + F+ G  S V + N+L+  Y  CG   +A  VF  M  +++VSWN MID 
Sbjct: 262 LRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDG 321

Query: 211 FVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
             Q GE + A   F +M    E P   T   +  ACA L  L  G + H  + +     L
Sbjct: 322 CAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDK---LKL 378

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            ++V V NSLI MY KC  +DIA  +F ++ K ++T WN++ILG+A +G  + AL  F  
Sbjct: 379 DSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVT-WNAMILGYAQNGCVKEALNLF-C 436

Query: 330 LVVEESFSPNSITFVGVLSA-----CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           ++  +    +  T VGV++A      N +     G      M N   ++        LVD
Sbjct: 437 MMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTA------LVD 490

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + A+ G I  A  L  +M  +   + W +++D 
Sbjct: 491 MYAKCGAIKTARKLF-DMMQERHVITWNAMIDG 522



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 32/331 (9%)

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           I K G  ++      +I  +   G    A +VF+++  +  V +++M+  + +      A
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 221 LKLFRRMQI----LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           L  F RM      L   D   +  +   C     L  G   H  I+    +   +++ V 
Sbjct: 130 LCFFLRMMCDEVRLVVGD---YACLLQLCGENLDLKKGREIHGLIIT---NGFESNLFVM 183

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            +++ +Y KC  +D A ++FE M  +DL SW +++ G+A +G A+ AL+   ++  E   
Sbjct: 184 TAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQM-QEAGQ 242

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDY--------FDVMINEYNITPVLEHYGCLVDLLAR 388
            P+S+T V +L A      +  GR          F+ ++N  N          L+D+  +
Sbjct: 243 KPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTN---------ALLDMYFK 293

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG---ICSG 445
            G+   A  +   M  K   V W +++D C +   S        K + E E        G
Sbjct: 294 CGSARIARLVFKGMRSKT-VVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMG 352

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           V +  + +    R W    L+ KL  D  V+
Sbjct: 353 VLLACANLGDLERGWFVHKLLDKLKLDSNVS 383


>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 335/591 (56%), Gaps = 68/591 (11%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           M+Q+KQ HA  + T L     T     +++  +SF  L YA ++F QI  P+ F +NT+I
Sbjct: 1   MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 60

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           +A A    +   ++ +F  M+     LP+++TF F  KAC       +G+Q   H  K G
Sbjct: 61  KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIG 120

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L S++++ N++I  YA+ G +D A +VFD  L++ L SWN+MI  +V  GE   A ++F 
Sbjct: 121 LESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFD 180

Query: 226 RMQILFEPDGYTFQSITSACAG--------------LATLSL--GMWAHAYILRHCDHSL 269
            M    E D  ++ +I +                  L T++L  G W H YI +      
Sbjct: 181 EMS---ERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTVALDQGRWIHVYIDK------ 231

Query: 270 VTDVLVNN----SLIDMYCKCGSLDIARQVF--ESMPKRDLTSWNSIILGFALHGRAEAA 323
            +++ +N     SL+DMY KCG +D A +VF  E   K  +  WN++I G+A+HG+++ A
Sbjct: 232 -SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEA 290

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           +  F+++ VE+  SPN +TFV +L+AC+H  +V EGR                       
Sbjct: 291 IDLFEQMKVEK-VSPNKVTFVALLNACSHGKLVEEGR----------------------- 326

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
                     EA   V NMPM PDA IW +LL AC + H  +   + + K + E +    
Sbjct: 327 ----------EAEETVFNMPMAPDATIWGALLGAC-RIHKDIERGQRIGKIIKELDSDHI 375

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
            G +VLL+ +Y+++ +W++   VR+ +   G  K PGCSSIE++G+ H+F  GD SHPQT
Sbjct: 376 -GCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQT 434

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           KQ+Y FLD +  KLK+ GY P++ +  +  + ++ K+++L  HSE+LAIA G++N  PG 
Sbjct: 435 KQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGT 494

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLRVC DCHE TK IS+++  EIIVRDR R+HHFKDG CSC DYW
Sbjct: 495 AIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 545


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 347/617 (56%), Gaps = 17/617 (2%)

Query: 3    VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRT 59
            V +V  G     + S  IF   + EG   N  +  S L  C S+  L   +QIH   ++T
Sbjct: 433  VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 60   ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
                Q    +    I  +A +  L  A R+  ++   +  +W  +I    +  D   +A+
Sbjct: 493  GF--QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQH-DMFSEAL 549

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             LF+ M  +G +  D   F  A+ ACA + A  QG+Q HA  +  G  +D+ INN+LI  
Sbjct: 550  QLFEEMEYRG-IQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            YA CG +  A   F+ + +++ +SWN ++    Q G F+ AL++F RM +   E + +T+
Sbjct: 609  YARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTY 668

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             S  SA A LA +  G   H+ +L+    S   +  V+NSLI +Y K GS+  A + F  
Sbjct: 669  GSAISAAASLANIKQGQQIHSMVLKTGYDS---EREVSNSLISLYAKSGSISDAWREFND 725

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            M +R++ SWN++I G++ HG    AL+ F+ + V     PN +TFVGVLSAC+H G+V E
Sbjct: 726  MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVC-GIMPNHVTFVGVLSACSHIGLVKE 784

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G DYF+ M   +++ P  EHY C+VDLL RAG +D A+  +  MP+  DA+IWR+LL AC
Sbjct: 785  GLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSAC 844

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
               H ++ + E  A  ++E E    S  YVL+S +YA +R+W      RKLM D GV KE
Sbjct: 845  V-IHKNIEIGERAAHHLLELEPED-SATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKE 902

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            PG S IE+    H F+AGD  HP T QIY ++  ++ +    GY  D    ++++E + G
Sbjct: 903  PGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQD--SFSLLNESEQG 960

Query: 539  KQSSL-RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            ++  +  +HSE+LAIA G+L+L   +PIRV KNLRVC DCH   K +S+I N  IIVRD 
Sbjct: 961  QKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDA 1020

Query: 598  ARFHHFKDGSCSCMDYW 614
             RFHHF  G CSC D+W
Sbjct: 1021 HRFHHFDGGVCSCKDFW 1037



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 184/387 (47%), Gaps = 15/387 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+LS+ T+ +     +Q+H   ++     +  T +    +  ++    L  A R+F  +
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGFHSE--TYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  ++N+LI    +      +A+ LF +M ++  + PD  T    L ACA + A  +
Sbjct: 323 NSRDGVSYNSLISGLVQQ-GFSDRALELFTKM-QRDCLKPDCITVASLLSACASVGALHK 380

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q H+H  K G+ +D+ +  SL+  Y+ C  ++ A+K F      ++V WNVM+ A+ Q
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQ 440

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                 + ++FR+MQ+    P+ +T+ SI   C  L  L LG   H ++++        +
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIK---TGFQLN 497

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V + LIDMY K G L +A ++   +P+ D+ SW ++I G+  H     AL+ F+ +  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY--NITPVLEHYGCLVDLLARAG 390
                 ++I F   +SAC     + +G+    +    Y       L     L+ L AR G
Sbjct: 558 -RGIQFDNIGFASAISACAGIRALRQGQ---QIHAQSYAAGFGADLSINNALISLYARCG 613

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
            I EA +L        + + W SL+  
Sbjct: 614 RIQEA-YLAFEKIGDKNNISWNSLVSG 639



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 16/393 (4%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++ N+  LL       S+ +  ++H +  ++    +   LLI S + ++    D   A +
Sbjct: 57  NYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE--PLLIDSLVDNYFRHGDQHGAVK 114

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC-AY 147
           VF +  N + F+WN +I     +  +  Q   LF+RM+ +G + P+ +TF   LKAC   
Sbjct: 115 VFDENSNRSVFSWNKMIHVFV-AQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGG 172

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
             AF+  KQ H+  F  G  S   + N LI  Y+  G+++ A KVF+ +  + +V+W  M
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232

Query: 208 IDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           I    Q G  + A+ LF  M    +F P  Y   S+ SA   +    LG   H  +++  
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIF-PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            HS   +  V N L+ +Y +   L  A ++F +M  RD  S+NS+I G    G ++ AL+
Sbjct: 292 FHS---ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVD 384
            F ++   +   P+ IT   +LSAC   G + +G       I    +   +LE  G L+D
Sbjct: 349 LFTKM-QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILE--GSLLD 405

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           L ++  +++ A H         + V+W  +L A
Sbjct: 406 LYSKCADVETA-HKFFLXTETENIVLWNVMLVA 437



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 161/338 (47%), Gaps = 17/338 (5%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A +VF  I   +  TW  +I   +++   + +AI+LF  M     + P  +     L
Sbjct: 211 IESAKKVFNCICMKDIVTWVAMISGLSQN-GLEEEAILLFCDM-HASEIFPTPYVLSSVL 268

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            A   +  F  G+Q H  + K G  S+ Y+ N L+  Y+    L  A ++F  M  R  V
Sbjct: 269 SASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           S+N +I   VQ G  D AL+LF +MQ    +PD  T  S+ SACA +  L  GM  H++ 
Sbjct: 329 SYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHA 388

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++     +  D+++  SL+D+Y KC  ++ A + F      ++  WN +++ +       
Sbjct: 389 IK---AGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLS 445

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP--VLEHY 379
            + + F ++ + E   PN  T+  +L  C   G +     Y    I+ + I     L  Y
Sbjct: 446 DSFEIFRQMQM-EGMIPNQFTYPSILRTCTSLGAL-----YLGEQIHTHVIKTGFQLNVY 499

Query: 380 GC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            C  L+D+ A+ G +  AL ++  +P + D V W +++
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 149/368 (40%), Gaps = 63/368 (17%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           N +SF   TL          K + I L   M E+G V  +   + + L+ C    +  + 
Sbjct: 24  NSHSFDQTTL-----HMEQGKSKRIQLMNFMEERG-VRSNYQNYLWLLEGCLTSGSLFET 77

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
            + H  I K G   +  + +SL+  Y   G    A KVFD    RS+ SWN MI  FV  
Sbjct: 78  MRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQ 137

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL----RHCDHSL 269
                   LFRRM      P+GYTF  +  AC G      G  A  Y+     R   +  
Sbjct: 138 KSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG------GDIAFNYVKQVHSRTFYYGF 191

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +  LV N LID+Y K G ++ A++VF  +  +D+ +W ++I G + +G  E A+  F  
Sbjct: 192 DSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCD 251

Query: 330 LVVEESFSPNSITFVGVLSA----------------------------CN--------HR 353
           +   E F P       VLSA                            CN         R
Sbjct: 252 MHASEIF-PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSR 310

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVI 410
            ++S  R  F  M +   ++     Y  L+  L + G  D AL L + M    +KPD + 
Sbjct: 311 KLISAER-IFSTMNSRDGVS-----YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364

Query: 411 WRSLLDAC 418
             SLL AC
Sbjct: 365 VASLLSAC 372


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 345/617 (55%), Gaps = 17/617 (2%)

Query: 3   VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRT 59
           V +V  G     + S  IF   + +G   N  +  S L  C S+  L   +QIH Q ++T
Sbjct: 385 VMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKT 444

Query: 60  ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
               Q    +    I  +A    LD A  +   +   +  +W  LI   A+  +   +A+
Sbjct: 445 GF--QFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQH-NLFAEAL 501

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             F+ M+ +G +  D   F  A+ ACA + A +QG+Q HA  +  G   D+ I N+L+  
Sbjct: 502 KHFKEMLNRG-IQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSL 560

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
           YA CG +  A   F+ +  +  +SWN +I  F Q G  + ALK+F +M +   E   +TF
Sbjct: 561 YARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTF 620

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S  SA A +A +  G   HA I++       +D+ V+N+LI  Y KCGS++ AR+ F  
Sbjct: 621 GSAVSAAANIANIKQGKQIHAMIIKR---GFDSDIEVSNALITFYAKCGSIEDARREFCE 677

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           MP+++  SWN++I G++ HG    A+  F+++  +    PN +TFVGVLSAC+H G+V++
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMK-QVGEMPNHVTFVGVLSACSHVGLVTK 736

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G  YF+ M  E+ + P   HY C+VDL++RAG +  A   +  MP++PDA IWR+LL AC
Sbjct: 737 GLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSAC 796

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
              H +V + E  A+ ++E E    S  YVLLS +YA + +W+     R++M ++GV KE
Sbjct: 797 -TVHKNVEVGEFAAQHLLELEPED-SATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKE 854

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD-YSQAAMVDELDD 537
           PG S IE+    H F+ GD  HP   +IY FL  +++K    GY  D YS    V++  +
Sbjct: 855 PGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQ--E 912

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K  ++ +HSE+LAI  G+L+L   +PI V KNLRVCKDCH   K +S+I N  IIVRD 
Sbjct: 913 QKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDA 972

Query: 598 ARFHHFKDGSCSCMDYW 614
            RFHHF+ G CSC DYW
Sbjct: 973 YRFHHFEGGICSCKDYW 989



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 194/390 (49%), Gaps = 21/390 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQ----HKTLLIYSRIIHFASFADLDYAFRV 89
           SS+LS  T+ K     +Q+HA   +     +    +  + +YSR+ +F S      A +V
Sbjct: 217 SSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVS------AEKV 270

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++++ +  ++N+LI   A+       A+ LF +M ++  + PD  T    L ACA   
Sbjct: 271 FSKMQSKDEVSFNSLISGLAQQ-GFSDGALELFTKM-KRDYLKPDCVTVASLLSACASNG 328

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A  +G+Q H+++ K G+ SD+ +  +L+  Y +C  +  A+++F      ++V WNVM+ 
Sbjct: 329 ALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           AF +      + ++FR+MQI    P+ +T+ SI   C  +  L LG   H  +++     
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIK---TG 445

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
              +V V + LIDMY K G LD A  +  ++ + D+ SW ++I G+A H     ALK+F 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFK 505

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLA 387
            + +      ++I F   +SAC     +++GR  +    ++ Y  +  L     LV L A
Sbjct: 506 EM-LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGY--SEDLSIGNALVSLYA 562

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           R G I EA      +  K D++ W  L+  
Sbjct: 563 RCGRIKEAYLEFEKIDAK-DSISWNGLISG 591



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 149/567 (26%), Positives = 252/567 (44%), Gaps = 77/567 (13%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS 98
           SL ECK      ++H + L+     +  ++L    +  + +  DLD   +VF  + N + 
Sbjct: 25  SLVECK------KLHGKILKLGFGNE--SVLCNKLVDVYFALGDLDGVVKVFEDMPNRSV 76

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA-YLFAFSQGKQA 157
            +W+ +I           + + LF  MIE+ NV P + +F   L+AC+ +       +Q 
Sbjct: 77  RSWDKIISGFMEK-KMSNRVLDLFSCMIEE-NVSPTEISFASVLRACSGHRIGIRYAEQI 134

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           HA I   GL+    I+N LI  YA  G +  A KVFDN+  +  VSW  MI  F Q G  
Sbjct: 135 HARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYE 194

Query: 218 DSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           + A+ LF  M    +F P  Y F S+ S C  +    +G   HA + ++   SL T   V
Sbjct: 195 EEAIHLFCEMHTAGIF-PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKY-GSSLET--YV 250

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            N+L+ +Y +  +   A +VF  M  +D  S+NS+I G A  G ++ AL+ F ++   + 
Sbjct: 251 CNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM-KRDY 309

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL---------- 385
             P+ +T   +LSAC   G + +G      +I +  I+  +   G L+DL          
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVI-KAGISSDMIVEGALLDLYVNCSDIKTA 368

Query: 386 ---------------------LARAGNIDEALHLVSNMPMK---PDAVIWRSLLDACCKK 421
                                  +  N+ E+  +   M +K   P+   + S+L  C   
Sbjct: 369 HEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSV 428

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYV--LLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
            A + L E++  QVI++  G    VYV  +L  +YA   + +   ++ + +T+  V    
Sbjct: 429 GA-LDLGEQIHTQVIKT--GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWT 485

Query: 480 GCSSIEIDGIA-HEFFAGDTSHPQTKQIYGFLDLIDEKLKSR--GYTPDYSQAAMVDELD 536
                 I G A H  FA    H        F ++++  ++S   G++   S  A +  L+
Sbjct: 486 AL----ISGYAQHNLFAEALKH--------FKEMLNRGIQSDNIGFSSAISACAGIQALN 533

Query: 537 DGK----QSSLRLHSERLAIALGILNL 559
            G+    QS +  +SE L+I   +++L
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSL 560



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 161/361 (44%), Gaps = 48/361 (13%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E   +  +  T+ + L  C    +  + K+ H  I K G  ++  + N L+  Y + G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
           LD   KVF++M  RS+ SW+ +I  F++    +  L LF  M +    P   +F S+  A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 245 CAG-LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           C+G    +      HA I+  C H L+   +++N LI +Y K G +  AR+VF+++  +D
Sbjct: 121 CSGHRIGIRYAEQIHARII--C-HGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             SW ++I GF+ +G  E A+  F  +     F P    F  VLS C    +   G +  
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIF-PTPYVFSSVLSGCTKIKLFDVG-EQL 235

Query: 364 DVMINEYNITPVLEHYGC---------------------------------LVDLLARAG 390
             ++ +Y  +  LE Y C                                 L+  LA+ G
Sbjct: 236 HALVFKYGSS--LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQG 293

Query: 391 NIDEALHLVSNMP---MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
             D AL L + M    +KPD V   SLL AC   + ++   E++   VI++  GI S + 
Sbjct: 294 FSDGALELFTKMKRDYLKPDCVTVASLLSACA-SNGALCKGEQLHSYVIKA--GISSDMI 350

Query: 448 V 448
           V
Sbjct: 351 V 351


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/549 (40%), Positives = 332/549 (60%), Gaps = 22/549 (4%)

Query: 70  IYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           I S +IH +A+  DL  A ++F      +  +WN +I    + V+    A ++F RM+ +
Sbjct: 232 IVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMG-HARMVFDRMVCR 290

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
                D  ++   +   A +    + K+    + +R LVS     NS++  +  CG+++ 
Sbjct: 291 -----DVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVS----WNSMLAGFVKCGNVED 341

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A  +F  M  R +VSWN M+  + Q G+ + AL LF +M+ +  +P   T  S+ SACA 
Sbjct: 342 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 401

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L  G+  H YI    D+ +  + +V  +L+DMY KCG + +A QVF +M  +D+ +W
Sbjct: 402 LGALDKGLHLHTYI---NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAW 458

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N+II G A+HG  + A + F  +  E    PN ITFV +LSAC+H GMV EG+   D M 
Sbjct: 459 NTIIAGMAIHGNVKEAQQLFKEMK-EAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMS 517

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
           + Y I P +EHYGC++DLLARAG ++EA+ L+  MPM+P+     +LL  C + H +  L
Sbjct: 518 SSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGC-RIHGNFEL 576

Query: 428 SEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
            E V K++I  +   C SG Y+LLS +YA+A++W+D   VR LM   G++K PG S IE+
Sbjct: 577 GEMVGKRLINLQP--CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 634

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR-GYTPDYSQAAMVDELDDGKQSSLRL 545
            G+ H F AGD SHP++ +IY  L+ I  +LKS  GY+ D     ++D  ++ K+ +L +
Sbjct: 635 KGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNV-LLDMEEEDKEHALAV 693

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G+L+L     IR+ KNLRVC+DCH V KLIS+++  EIIVRDR RFHHF+D
Sbjct: 694 HSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFED 753

Query: 606 GSCSCMDYW 614
           G CSC+D+W
Sbjct: 754 GECSCLDFW 762



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 202/404 (50%), Gaps = 19/404 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQAL-RTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LS    CK++  LKQ+HAQ +     P Q   L   S +  F +F  L YA  +F+ ++
Sbjct: 99  ILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTF--LAYAKTIFHHLQ 156

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           NP    +N+LIRA + S     +A+ L+  M++ G + PD  T+PF +KAC        G
Sbjct: 157 NPPPSLYNSLIRALSSS-KTPLEALPLYHTMLQSG-LKPDHMTYPFVIKACNESSVTWFG 214

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
              H H+ K G   D YI +SLIH YA+   L  A ++F+    R +VSWN MID +V+ 
Sbjct: 215 LLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKH 274

Query: 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            E   A  +F RM      D  ++ ++ +  A +  +           R  D     +++
Sbjct: 275 VEMGHARMVFDRMVCR---DVISWNTMINGYAIVGKIDEAK-------RLFDEMPERNLV 324

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             NS++  + KCG+++ A  +F  MP RD+ SWNS++  +A  G+   AL  FD++    
Sbjct: 325 SWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA-V 383

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P   T V +LSAC H G + +G  +    IN+  I         LVD+ A+ G I  
Sbjct: 384 GVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISL 442

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           A  + + M  K D + W +++ A    H +V  ++++ K++ E+
Sbjct: 443 ATQVFNAMESK-DVLAWNTII-AGMAIHGNVKEAQQLFKEMKEA 484


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 334/586 (56%), Gaps = 15/586 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY-SRIIHFASFADLDYAFRVFYQIE 94
           LLS +        L+QIHA  LRT+L +       + SR+       D++Y+ RVF Q  
Sbjct: 14  LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           NP     NT+IRA + S     +   LF+ +    ++  +  +  FALK C        G
Sbjct: 74  NPTLSHCNTMIRAFSLS-QTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGG 132

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
            Q H  IF  G +SD  +  +L+  Y++C +   A KVFD + +R  VSWNV+   +++ 
Sbjct: 133 LQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRN 192

Query: 215 GEFDSALKLFRRMQI----LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                 L LF +M+       +PDG T      ACA L  L  G   H +I    D + +
Sbjct: 193 KRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFI----DENGL 248

Query: 271 TDVL-VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           +  L ++N+L+ MY +CGS+D A QVF  M +R++ SW ++I G A++G  + A++ F+ 
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNE 308

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLAR 388
           ++ +   SP   T  G+LSAC+H G+V+EG  +FD M + E+ I P L HYGC+VDLL R
Sbjct: 309 ML-KFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGR 367

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           A  +D+A  L+ +M MKPD+ IWR+LL AC + H  V L E V   +IE +    +G YV
Sbjct: 368 ARLLDKAYSLIKSMEMKPDSTIWRTLLGAC-RVHGDVELGERVISHLIELKAEE-AGDYV 425

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LL   Y++  +W  V  +R LM +K +  +PGCS+IE+ G  HEF   D SHP+ ++IY 
Sbjct: 426 LLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYK 485

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L  I+++LK  GY  + +      E ++ K  +LR HSE+LAIA GIL   PG  IRV 
Sbjct: 486 MLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVT 545

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR C DCH   K +S +++  +IVRDR+RFHHFK GSCSC D+W
Sbjct: 546 KNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 336/584 (57%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFY 91
           ++SLL S    K++   KQ+HA+  +  +      L + +++++F S  + L  A  +F 
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYN---LDLATKLVNFYSVCNSLRNAHHLFD 117

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   N F WN LIRA A +      AI L+ +M+E G + PD  T PF LKAC+ L   
Sbjct: 118 KIPKGNLFLWNVLIRAYAWN-GPHETAISLYHQMLEYG-LKPDNFTLPFVLKACSALSTI 175

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +G+  H  + + G   DV++  +L+  YA CG +  A  VFD +++R  V WN M+ A+
Sbjct: 176 GEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAY 235

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G  D +L L   M      P   T  ++ S+ A +A L  G   H +  RH      
Sbjct: 236 AQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRH---GFQ 292

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V  +LIDMY KCGS+ +A  +FE + ++ + SWN+II G+A+HG A  AL  F+R+
Sbjct: 293 YNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERM 352

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           + E    P+ ITFVG L+AC+   ++ EGR  +++M+ +  I P +EHY C+VDLL   G
Sbjct: 353 MKEAQ--PDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCG 410

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            +DEA  L+  M + PD+ +W +LL++C K H +V L+E   +++IE E    SG YV+L
Sbjct: 411 QLDEAYDLIRQMDVMPDSGVWGALLNSC-KTHGNVELAEVALEKLIELEPDD-SGNYVIL 468

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           + +YA + +W  V  +R+LM DKG+ K   CS IE+    + F +GD SHP +  IY  L
Sbjct: 469 ANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAEL 528

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             ++  ++  GY PD + +   D  +D K   +  HSERLAIA G+++  PG  + + KN
Sbjct: 529 KRLEGLMREAGYVPD-TGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKN 587

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C+DCH   K IS+I   EI VRD  R+HHF+ G CSC DYW
Sbjct: 588 LRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 310/528 (58%), Gaps = 10/528 (1%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF  +   +  +WNT+I   A+  +   +  ++  R +   ++ PD  T    L   A 
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQ--NGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                +GK+ H +  + G  +DV+I +SLI  YA C  +D + +VF  + +   +SWN +
Sbjct: 249 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 308

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I   VQ G FD  LK F++M I   +P+  +F SI  ACA L TL LG   H YI+R   
Sbjct: 309 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS-- 366

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                +V + ++L+DMY KCG++  AR +F+ M   D+ SW ++I+G+ALHG A  A+  
Sbjct: 367 -RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 425

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F R+ VE    PN + F+ VL+AC+H G+V E   YF+ M  +Y I P LEHY  + DLL
Sbjct: 426 FKRMEVE-GVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 484

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R G ++EA   +S+M ++P   +W +LL A C+ H ++ L+E+V+K++   +     G 
Sbjct: 485 GRVGRLEEAYEFISDMHIEPTGSVWSTLL-AACRVHKNIELAEKVSKKLFTVDPQNI-GA 542

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +Y++A RW D   +R  M DKG+ K+P CS IEI    H F AGD SHP   +I
Sbjct: 543 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 602

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              L ++ E+++  GY  D ++  + D  ++ K+  L  HSERLAI  GI++   G  IR
Sbjct: 603 NEALKVLLEQMEREGYVLDTTEV-LHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIR 661

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCH  TK IS+I   EI+VRD +RFHHFKDG CSC D+W
Sbjct: 662 VTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 192/412 (46%), Gaps = 42/412 (10%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LL + +  KS SQ KQ+HAQ LRT+LP      L+ + +  +++   L  +  +F  + 
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSLPSPS---LLSTILSIYSNLNLLHDSLLIFNSLP 66

Query: 95  NP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +P  +  W ++IR C  S      ++  F +M+  G   PD + FP  LK+C  +     
Sbjct: 67  SPPTTLAWKSIIR-CYTSHGLFLHSLSFFIQMLASGK-YPDHNVFPSVLKSCTLMKDLRF 124

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN----------------------- 190
           G+  H  I + G+  D+Y  N+L++ Y+    L+  N                       
Sbjct: 125 GESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESY 184

Query: 191 ------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
                 KVF+ M +R +VSWN +I    Q G  + AL + R M      PD +T  S+  
Sbjct: 185 YLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLP 244

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
             A    L  G   H Y +R   +    DV + +SLIDMY KC  +D + +VF  +P+ D
Sbjct: 245 IFAEYVNLLKGKEIHGYAIR---NGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHD 301

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             SWNSII G   +G  +  LK+F ++++ +   PN ++F  ++ AC H   +  G+   
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAK-IKPNHVSFSSIMPACAHLTTLHLGKQLH 360

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +I       V      LVD+ A+ GNI  A  +   M +  D V W +++
Sbjct: 361 GYIIRSRFDGNVFIA-SALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMI 410



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 40/301 (13%)

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVSWNVMIDA 210
           SQ KQ HA I +  L S   ++ +++  Y++   L  +  +F+++    + ++W  +I  
Sbjct: 22  SQAKQLHAQILRTSLPSPSLLS-TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRC 80

Query: 211 FVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +   G F  +L  F +M    + PD   F S+  +C  +  L  G   H  I+R     +
Sbjct: 81  YTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRL---GM 137

Query: 270 VTDVLVNNSLIDMYCKCGSLDIA-----------------------------RQVFESMP 300
             D+   N+L++MY K  SL+                               R+VFE MP
Sbjct: 138 GFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMP 197

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           KRD+ SWN++I G A +G  E AL    R +      P+S T   VL        + +G+
Sbjct: 198 KRDIVSWNTVISGNAQNGMHEDALMMV-REMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 256

Query: 361 DYFDVMI-NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
           +     I N Y+    +     L+D+ A+   +D++  +   +P + D + W S++  C 
Sbjct: 257 EIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCV 313

Query: 420 K 420
           +
Sbjct: 314 Q 314


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 336/576 (58%), Gaps = 26/576 (4%)

Query: 50  KQIHAQALRTAL----PQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           +Q+H  A+R+ L    P     LL +Y+   H +   D   A + F +I +PN      +
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYN---HCSRPID---ARKAFDEIPSPNPVIITAM 162

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
                R+    P ++ LF+++I  G+    D+     A  A A +         HA + K
Sbjct: 163 ASGYVRNNLVYP-SLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVK 221

Query: 164 RGLVSDVYINNSLIHFYASCGHLDL--ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            GL  D  + N+++  YA  G  DL  A KVFD M E+ +VSWN MI  + Q G    AL
Sbjct: 222 TGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADAL 280

Query: 222 KLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
            L+R+M  +    + +  T  +I  ACA   T+  G   H  ++R     L  +V V  S
Sbjct: 281 GLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRM---GLEENVYVGTS 337

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           ++DMY KCG +++AR+ F+ + ++++ SW+++I G+ +HG  + AL  F+ +      +P
Sbjct: 338 VVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMC-RSGQNP 396

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N ITF+ VL+AC+H G++ +GR +++ M   + I P +EHYGC+VDLL RAG +DEA  L
Sbjct: 397 NYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGL 456

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  M +KPDA IW +LL AC + H +V L+E  AK++ E +   C G YVLLS +YA A 
Sbjct: 457 IKEMKVKPDAAIWGALLSAC-RIHKNVELAEISAKRLFELDATNC-GYYVLLSNIYAEAG 514

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
            W DV  +R L+  +G+ K PG SS+E+ G  H F+ GD SHPQ K+IY +L  + EK++
Sbjct: 515 MWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQ 574

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             GY P+ + + + D  ++ K S+L +HSE+LAIA  ++N  PG  I V KNLRVC DCH
Sbjct: 575 EAGYVPN-TGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCH 633

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              KLI++I   EIIVRD  RFHHFKDGSCSC DYW
Sbjct: 634 TAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 346/587 (58%), Gaps = 24/587 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALR------TALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           SLLS+ T   ++   + IHA   +       A+     T+ + +  +H  +        +
Sbjct: 420 SLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT--------K 471

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           ++  + + +  +WN  +           + + +F  M+E+G  +P+ +TF   L +C+ L
Sbjct: 472 LYESMVDRDLISWNAYLSG-LHDCGMYDRPLTIFYHMLEEG-FIPNMYTFISILGSCSCL 529

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
           F    G+Q HAHI K  L  + ++  +LI  YA C +L+ A+  F+ +  R L +W V+I
Sbjct: 530 FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVII 589

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q  + + AL  FR+MQ    +P+ +T     S C+ LA+L  G   H+ + +    
Sbjct: 590 TNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKS--- 646

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
             V+D+ V ++L+DMY KCG ++ A  +FE++ +RD  +WN+II G+A +G+   AL  F
Sbjct: 647 GHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAF 706

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            R++++E  SP+ +TF G+LSAC+H+G+V EG+++F+ M  ++ I+P ++H  C+VD+L 
Sbjct: 707 -RMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILG 765

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R G  DE    +  M +  +A+IW ++L A  K H ++VL E+ A ++ E +    S  Y
Sbjct: 766 RVGKFDELEDFIQKMQLSQNALIWETVLGAS-KMHNNLVLGEKAANKLFELQPEEESS-Y 823

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +LLS ++A+  RW+DV  VR LM+ KGV KEPGCS +E +G  H F + D SHPQ ++I+
Sbjct: 824 ILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIH 883

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             LD +D +L S  Y P  ++  + +  +  K+ +LR HSERLA+   +++      IR+
Sbjct: 884 LKLDELDRELASIQYVPK-TEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRI 942

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           FKNLR+C+DCH+V K IS I N EI+VRD  RFHHFK+G+CSC D+W
Sbjct: 943 FKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 192/387 (49%), Gaps = 13/387 (3%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +SS+L      +S+   K IH   ++  + P  H   L  S +  +A      YA  V  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSH---LWVSLVNVYAKCRYSAYARLVLA 171

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++ + +  +W  LI+       A   +I LFQ M  +G ++P++ T    LKAC+   A 
Sbjct: 172 KMPDRDVVSWTALIQGLVAEGFAN-DSIYLFQEMQNEG-IMPNEFTLATGLKACSLCMAL 229

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA  FK GL+ D+++ ++L+  YA CG ++LA+K+F  M E++ V+WNV+++ +
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289

Query: 212 VQFGEFDSALKLF-RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G+    LKLF   M++  + + +T  ++   CA    L  G   H+ I++ C +   
Sbjct: 290 AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK-CGYE-- 346

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  +   L+DMY KCG    A  VF+++ K D+  W+++I      G++E ++K F  +
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
            + ++  PN  T   +LSA  + G +  G+      + +Y     +     LV +  + G
Sbjct: 407 RLGDTL-PNQYTICSLLSAATNTGNLQYGQS-IHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
            + +   L  +M +  D + W + L  
Sbjct: 465 CVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 185/389 (47%), Gaps = 16/389 (4%)

Query: 32  NHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADLDY-AF 87
           N  +L + L  C +   LKQ   IH+  ++           I   ++   S   L   A 
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNE---FIGCGLVDMYSKCGLAIDAI 369

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I+ P+   W+ LI  C        ++I LF  M   G+ LP+++T    L A   
Sbjct: 370 GVFKTIKKPDIVVWSALI-TCLDQQGQSEESIKLFHLM-RLGDTLPNQYTICSLLSAATN 427

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                 G+  HA ++K G  +DV ++N+L+  Y   G +    K++++M++R L+SWN  
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +      G +D  L +F  M +  F P+ YTF SI  +C+ L  +  G   HA+I++   
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIK--- 544

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           + L  +  V  +LIDMY KC  L+ A   F  +  RDL +W  II  +A   + E AL Y
Sbjct: 545 NQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNY 604

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F R + +E   PN  T  G LS C+    +  G+    ++    +++ +      LVD+ 
Sbjct: 605 F-RQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVG-SALVDMY 662

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           A+ G ++EA  L   + ++ D + W +++
Sbjct: 663 AKCGCMEEAEALFEAL-IRRDTIAWNTII 690



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 87/196 (44%), Gaps = 11/196 (5%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH- 76
           F   + EG   N  +L   L+ C S++ L   +Q+H+   ++        + + S ++  
Sbjct: 605 FRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSG---HVSDMFVGSALVDM 661

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    ++ A  +F  +   ++  WNT+I   A++     +A+  F+ M+++G + PD  
Sbjct: 662 YAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGN-KALTAFRMMLDEG-ISPDGV 719

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           TF   L AC++     +GK+    +++  G+   V     ++      G  D        
Sbjct: 720 TFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQK 779

Query: 196 M-LERSLVSWNVMIDA 210
           M L ++ + W  ++ A
Sbjct: 780 MQLSQNALIWETVLGA 795


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/620 (37%), Positives = 337/620 (54%), Gaps = 48/620 (7%)

Query: 34  SSLLSSLTECKSMSQLKQ--IHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           ++L+SS  +C +    +   + A+A +      ++  L ++ II  +    DLD A    
Sbjct: 187 NALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFL 246

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
                     WN +I   A       +A  +F++MI    +  D+ TF   +  CA    
Sbjct: 247 NGTSKKLGVAWNAMISGYAHR-GLYLEAFEMFRKMI-MSKIQLDEFTFTSVISVCANAGC 304

Query: 151 FSQGKQAHAHIFKR--GLVSDVY--INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
           F  GK+ HA+  K       DV   +NN+LI FY  CG +D+A ++F+ M ER LVSWN+
Sbjct: 305 FRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNI 364

Query: 207 -------------------------------MIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
                                          MI    Q G  + ALK F RM++  FEP 
Sbjct: 365 ILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPC 424

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            Y F     +C+ L +L  G   HA ++R+   S ++     N+LI MY +CG +D A  
Sbjct: 425 DYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLS---AGNALITMYARCGVVDAAHC 481

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F +MP  D  SWN++I     HG+   A++ F+ ++ +E   P+ I+F+ V+SAC+H G
Sbjct: 482 LFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEML-KEGILPDRISFLTVISACSHAG 540

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V EGR YFD M N Y + P  EHY  ++DLL RAG   EA  ++ +MP +P A IW +L
Sbjct: 541 LVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEAL 600

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L A C+ H ++ L  E A+++ E +     G YVLLS +YA A +WND+  VRKLM D+G
Sbjct: 601 L-AGCRIHGNIDLGIEAAERLFELKPQH-DGTYVLLSNMYAVAGQWNDMAKVRKLMRDRG 658

Query: 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
           V KEPGCS IE++   H F  GD +HP+ +QIY +L+ +  +++  GY PD ++  + D 
Sbjct: 659 VKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPD-TKCVLHDV 717

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
             D K+  L  HSE+LA+A G + L  G  +RVFKNLR+C DCH   K +S++   EI+V
Sbjct: 718 ESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVV 777

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RD  RFHHF+DG CSC DYW
Sbjct: 778 RDGKRFHHFRDGKCSCGDYW 797



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 214/520 (41%), Gaps = 123/520 (23%)

Query: 31  NNHSSLLS--SLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIH-FASFADLDYA 86
           N + SLL    L    S S  + +HA  + +   P+ H    I +R+I  ++  + L+YA
Sbjct: 12  NRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGH----ILNRLIDIYSKSSKLNYA 67

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAK---------PQAI---VLFQRMI-------- 126
             +F +I  P+     TLI A + + D K         P  +   V +  MI        
Sbjct: 68  RYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHD 127

Query: 127 -----------EQGNVLPDKHTFPFALKACAYLFAFSQG-KQAHAHIFKRGLVSDVYINN 174
                      ++ N  PD +TF   L A A +    +  +Q H  + K G      + N
Sbjct: 128 GHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLN 187

Query: 175 SLIHFYASCGH---------LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS------ 219
           +LI  Y  C           +  A K+FD M  R  +SW  +I  +V+  + D+      
Sbjct: 188 ALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLN 247

Query: 220 -------------------------ALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSL 253
                                    A ++FR+M +   + D +TF S+ S CA      L
Sbjct: 248 GTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRL 307

Query: 254 GMWAHAYILRHCDHSLVTDVL--VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           G   HAY L+   +    DV   VNN+LI  Y KCG +DIA+++F  MP+RDL SWN I+
Sbjct: 308 GKEMHAYFLKTVANP-APDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIIL 366

Query: 312 LGF-------------------------------ALHGRAEAALKYFDRLVVEESFSPNS 340
            G+                               A  G AE ALK+F+R+ + + F P  
Sbjct: 367 SGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKL-QGFEPCD 425

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
             F G + +C+  G +  GR      +  Y     L     L+ + AR G +D A  L  
Sbjct: 426 YAFAGAIISCSVLGSLKHGRQ-LHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFI 484

Query: 401 NMPMKPDAVIWRSLLDACCKKHA----SVVLSEEVAKQVI 436
           NMP   DA+ W +++ A   +H     ++ L EE+ K+ I
Sbjct: 485 NMPC-VDAISWNAMI-AALGQHGQGTQAIELFEEMLKEGI 522


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 341/593 (57%), Gaps = 18/593 (3%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTAL-PQQHKTLLIYSRIIHFASFAD 82
           EG   N  + +S L  C S   L   K IH Q +++ + P  H   L  S +  +A    
Sbjct: 185 EGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSH---LWNSLVNVYAKCGS 241

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
            +YA +VF +I   +  +W  LI       +     + +F +M+ +G   P+ +TF   L
Sbjct: 242 ANYACKVFGEIPERDVVSWTALITGFV--AEGYGSGLRIFNQMLAEG-FNPNMYTFISIL 298

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           ++C+ L     GKQ HA I K  L  + ++  +L+  YA    L+ A  +F+ +++R L 
Sbjct: 299 RSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLF 358

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +W V++  + Q G+ + A+K F +MQ    +P+ +T  S  S C+ +ATL  G   H+  
Sbjct: 359 AWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMA 418

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++        D+ V ++L+DMY KCG ++ A  VF+ +  RD  SWN+II G++ HG+  
Sbjct: 419 IKAGQSG---DMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGG 475

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            ALK F+ ++ +E   P+ +TF+GVLSAC+H G++ EG+ +F+ +   Y ITP +EHY C
Sbjct: 476 KALKAFEAML-DEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYAC 534

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VD+L RAG   E    +  M +  + +IW ++L AC K H ++   E  A ++ E E  
Sbjct: 535 MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGAC-KMHGNIEFGERAAMKLFELEPE 593

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
           I S  Y+LLS ++A+   W+DV  VR LM+ +GV KEPGCS +E++G  H F + D SHP
Sbjct: 594 IDSN-YILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHP 652

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           + ++I+  L  + +KL S GYTP+ +   + +  D  KQ  L  HSERLA+A  +L+   
Sbjct: 653 KIREIHLKLQDLHQKLMSVGYTPN-TDHVLHNVSDREKQELLFYHSERLALAFALLSTST 711

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              IR+FKNLR+C DCH+  K IS I N E++VRD   FHHFK+GSCSC ++W
Sbjct: 712 RKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 178/371 (47%), Gaps = 18/371 (4%)

Query: 49  LKQIHAQALRTAL-PQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           LK+I  + ++  + P  H    ++S +++ +     L  A +V  ++   +   WN  + 
Sbjct: 8   LKKIIFRVIKNGICPDSH----LWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLS 63

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           + A S     +A+ LF  M     +  ++  F   + A A L     G+  HA + K G 
Sbjct: 64  S-ANSPYPLQEAVQLFYLM-RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF 121

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            SD+ I+N+ +  Y     ++   + F  M+  +L S N ++  F      D   ++  +
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           + +  FEP+ YTF SI   CA    L+ G   H  +++     +  D  + NSL+++Y K
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIK---SGINPDSHLWNSLVNVYAK 238

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGS + A +VF  +P+RD+ SW ++I GF   G   + L+ F++++  E F+PN  TF+ 
Sbjct: 239 CGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLA-EGFNPNMYTFIS 296

Query: 346 VLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           +L +C+    V  G+  +  ++ N  +    +     LVD+ A+   +++A   + N  +
Sbjct: 297 ILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG--TALVDMYAKNRFLEDA-ETIFNRLI 353

Query: 405 KPDAVIWRSLL 415
           K D   W  ++
Sbjct: 354 KRDLFAWTVIV 364



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 159/347 (45%), Gaps = 25/347 (7%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           IFN    EG   N  + +S L  C S+S +   KQ+HAQ ++ +L       +  + +  
Sbjct: 278 IFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSL--DGNDFVGTALVDM 335

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L+ A  +F ++   + F W  ++   A+    + +A+  F +M  +G V P++ 
Sbjct: 336 YAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE-KAVKCFIQMQREG-VKPNEF 393

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T   +L  C+ +     G+Q H+   K G   D+++ ++L+  YA CG ++ A  VFD +
Sbjct: 394 TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 453

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSL 253
           + R  VSWN +I  + Q G+   ALK F  M  L E   PD  TF  + SAC+ +  +  
Sbjct: 454 VSRDTVSWNTIICGYSQHGQGGKALKAFEAM--LDEGTVPDEVTFIGVLSACSHMGLIEE 511

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIIL 312
           G   H   L    + +   +     ++D+  + G         E M    ++  W +++ 
Sbjct: 512 GK-KHFNSLSKI-YGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLG 569

Query: 313 GFALHGRAE----AALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
              +HG  E    AA+K F+   +E     N I    + +A   +GM
Sbjct: 570 ACKMHGNIEFGERAAMKLFE---LEPEIDSNYILLSNMFAA---KGM 610


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/460 (44%), Positives = 289/460 (62%), Gaps = 5/460 (1%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           +A   ++  G   DV   N+++  Y   G L  A +VF  M ER+LVSW+ M+DA V+ G
Sbjct: 131 RARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAG 190

Query: 216 EFDSALKLF-RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           EF  AL +F R M+  F PD     S+  ACA L  +  G W H Y+          +++
Sbjct: 191 EFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLM 250

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +  +L+DMYCKCG ++ A QVF+ + +RD+  WN++I G A++G  E AL+ F R++ ++
Sbjct: 251 LETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRML-QK 309

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
            F PN  TF+ VL AC H G V EG+  F  M  +Y I P  EHYGCL DLL RAGN++E
Sbjct: 310 GFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEE 368

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A  L+ +MPM+P A  W +L+ +C + H  + + E V K++IE E     G YV+L  +Y
Sbjct: 369 AEALLLDMPMEPHASQWGALMSSC-QMHNDINVGERVGKRLIELEP-YDGGRYVVLFNLY 426

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A   RW +   +R++M D+G  KE G S IE++G+ HEF +GDT HP T++IY  L+ I+
Sbjct: 427 AVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIE 486

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +L+  GY  D SQ  M  + ++ K  +L  HSERLA+A GILN+  G+PIR+ KNLRVC
Sbjct: 487 RRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVC 546

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +DCH  +KL+S+++  EIIVRDR RFH F+DG CSC DYW
Sbjct: 547 RDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 10/282 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL  A  VF ++   N  +W+ ++ AC R+ +   +A+ +F RM+ +    PD  
Sbjct: 155 YGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFG-EALWVFDRMMRE-EFRPDVV 212

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFK---RGLVSDVYINNSLIHFYASCGHLDLANKVF 193
                LKACA+L A  +G+  H ++      G   ++ +  +L+  Y  CG ++ A +VF
Sbjct: 213 VLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVF 272

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D +  R +V WN MI      G  + AL+LFRRM Q  F P+  TF ++  AC     + 
Sbjct: 273 DGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVD 332

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSII 311
            G      +    D+ +         L D+  + G+++ A  +   MP     S W +++
Sbjct: 333 EGKRVFKSMQ---DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
               +H       +   RL+  E +       +  L A N R
Sbjct: 390 SSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGR 431



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 40/178 (22%)

Query: 274 LVNNSLIDMYC--------------------------------KCGSLDIARQVFESMPK 301
           +V NSL+ +YC                                K G L  AR+VF  MP+
Sbjct: 114 VVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPE 173

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR- 360
           R+L SW++++      G    AL  FDR++ EE F P+ +  V VL AC H G V  GR 
Sbjct: 174 RNLVSWSAMVDACVRAGEFGEALWVFDRMMREE-FRPDVVVLVSVLKACAHLGAVERGRW 232

Query: 361 --DYFDV-MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              Y +           +LE    LVD+  + G +++A  +   +  + D V+W +++
Sbjct: 233 VHRYLETGSFGGRRGNLMLET--ALVDMYCKCGCMEDAWQVFDGVHRR-DVVLWNAMI 287


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/538 (40%), Positives = 302/538 (56%), Gaps = 65/538 (12%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  +    L ACA + A+  GK  H    + G   D+++ N+L+  YA CG +D A+KV
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLF---------------------------- 224
           FD + E+ +VSWN M++ + Q G F+ AL LF                            
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 225 -------RRMQ------------------ILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
                  R MQ                   L +P+ +T      ACA LA L LG   HA
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 260 YILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           YILR H D + +    V N LIDMY K G +D+AR VF+++ +++  SW S++ G+ +HG
Sbjct: 191 YILRNHFDSAFL---YVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
           R + AL+ FD +       P+ +T + VL AC+H GM+ +G ++F+ M  E+ + P  EH
Sbjct: 248 RGKEALEVFDEMR-RVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEH 306

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE- 437
           Y C+VDLL RAG ++EA+ L+  M M+P +++W +LL  C + HA+V L E  AKQ++E 
Sbjct: 307 YACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGC-RIHANVELGEHAAKQLLEL 365

Query: 438 -SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
            SE     G Y LLS +YA+ARRW DV  VR LM + G+ K PGCS ++       F+  
Sbjct: 366 NSEN---DGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVA 422

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           D +HPQ+KQIY  L  + +++K  GY P+ S  A+ D  D+ K   L  HSE+LA+A GI
Sbjct: 423 DKTHPQSKQIYEILRSLTQRIKVLGYVPETS-FALHDVDDEEKVDLLFEHSEKLALAYGI 481

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L   PG PIR+ KNLRVC DCH     IS I + EII+RD +RFHHFK GSCSC  YW
Sbjct: 482 LISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 157/377 (41%), Gaps = 64/377 (16%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           SL++ L  C SM      K +H  A+R+      + L + + ++  +A    +D A +VF
Sbjct: 15  SLVNVLPACASMGAWLHGKAVHGIAVRSG---SFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ---------------------- 128
            +I+  +  +WN ++   ++ +     A+ LF++M E+                      
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQ-IGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 129 -----------------------------GNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
                                        G V P+  T   AL ACA L A   G+Q HA
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 160 HIFKRGLVSD-VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
           +I +    S  +Y+ N LI  YA  G +D+A  VFDN+ +++ VSW  ++  +   G   
Sbjct: 191 YILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            AL++F  M ++  +PDG T   +  AC+    +  G+     + +  +  ++       
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSK--EFGVIPGQEHYA 308

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            ++D+  + G L+ A ++ E M     +  W +++ G  +H   E       +L+   S 
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE 368

Query: 337 SPNSITFVGVLSACNHR 353
           +  S T +  + A   R
Sbjct: 369 NDGSYTLLSNIYANARR 385


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 337/646 (52%), Gaps = 79/646 (12%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQI 93
           LS L  CKS++  KQIHA  L+  L        I  +++H  + +    LDYA R+F   
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDP---FIAGKLLHHCAISLSDSLDYACRLFRYT 65

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            NP+ F  NTLIR    S D    +++ F  M       PD  +F F +KA A L +   
Sbjct: 66  PNPDVFMHNTLIRGLYES-DRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRV 124

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--------------- 198
           G Q H      GL + +++  +LI  Y  CG +  A KVFD M E               
Sbjct: 125 GIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCR 184

Query: 199 ----------------RSLVSWNVMIDAFVQFGE-------------------------- 216
                           R+L+SWNVM+  + + GE                          
Sbjct: 185 GGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGF 244

Query: 217 -----FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                F+ A   FR +Q     P+  +   + SACA    L  G   H +I +     L 
Sbjct: 245 AHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKS---GLA 301

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFES-MPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             V VNN+L+D Y KCG++ +A+ VFE  M +R++ SW S++   A+HG  E A+  F +
Sbjct: 302 WIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHK 361

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +  E    P+ I F+ +L AC+H G+V +G +YFD M   YNI P +EHYGC+VDL  RA
Sbjct: 362 ME-ESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRA 420

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G + +A   V  MP+   A+IWR+LL AC   H  V L+E+V +++ E +    S  +VL
Sbjct: 421 GQLQKAYEFVCQMPIPCTAIIWRTLLGAC-SMHGDVKLAEQVKERLSELDPNNSSD-HVL 478

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS  YA A +W D   VR+ MT++ +TK PG S IE+D I + F AG   +  T++ Y  
Sbjct: 479 LSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKK 538

Query: 510 LDLIDEKLKSRG-YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           L  I  +L+  G Y P+  +  + D  ++ K+ S+ +HSE+LA+A GI  L  G  IR+ 
Sbjct: 539 LKEIIRRLRVEGGYVPEIGRV-LHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIV 597

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR+C+DCH V KLIS+I+ VEI+VRDR+RFH FKDG CSC DYW
Sbjct: 598 KNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 340/587 (57%), Gaps = 24/587 (4%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYAFR 88
           ++L+S L  C ++  L   + +H   ++    ++    +++S  +   ++   +L+ A  
Sbjct: 297 TTLVSVLVACANIGNLSLGRALHGFGVKACFSEE----VVFSNTLLDMYSKCGNLNGATE 352

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF ++ +    +W ++I A  R       AI LF  M  +G V PD +T    + ACA  
Sbjct: 353 VFVKMGDTTIVSWTSIIAAYVRE-GLYSDAIGLFDEMQSKG-VRPDIYTVTSIVHACACS 410

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +  +G+  H+++ K G+ S++ + N+LI+ YA CG ++ A  VF  +  + +VSWN MI
Sbjct: 411 SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
             + Q    + AL+LF  MQ  F+PD  T   +  ACAGLA L  G   H +ILR     
Sbjct: 471 GGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILR---RG 527

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
             +D+ V  +L+DMY KCG L +A+ +F+ +PK+DL SW  +I G+ +HG    A+  F+
Sbjct: 528 YFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN 587

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            + +     P+  +F  +L+AC+H G+++EG  +F+ M NE  + P LEHY C+VDLLAR
Sbjct: 588 EMRI-AGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLAR 646

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            GN+ +A   + +MP+KPD  IW  LL   C+ H  V L+E+VA+ + E E    +  YV
Sbjct: 647 MGNLSKAYKFIESMPIKPDTTIWGVLLSG-CRIHHDVKLAEKVAEHIFELEPDN-TRYYV 704

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           +L+ VYA A +W +V  +RK M  +G  + PGCS IE+ G  + F AG++ HPQ K+I  
Sbjct: 705 VLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKI-- 762

Query: 509 FLDLIDEKLKSRGYTPDYS---QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
             D++  KL  +    DYS   +  +++E D  K+     HSE+ A+A GILNL PG  +
Sbjct: 763 --DVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTV 820

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           RV KN RVC DCHE+ K +S+   +EI++RD  RFHHFKDG CSC D
Sbjct: 821 RVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 198/390 (50%), Gaps = 11/390 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           E   N++ S+L    E KS+   K++H+  +   +       L    +  + +  DL   
Sbjct: 91  ELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEA--LGAKLVFMYVNCGDLVQG 148

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
            ++F +I N   F WN L+   A+  + + +++ LF++M + G V+ + +TF   LK  A
Sbjct: 149 RKIFDKIMNDKVFLWNLLMSEYAKIGNFR-ESVSLFKKMQKLG-VVGNCYTFTCVLKCFA 206

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            L    + K+ H ++ K G  S+  + NSLI  Y   G ++ A+ +FD + E  +VSWN 
Sbjct: 207 ALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNS 266

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI+  V  G   + L++F +M IL  E D  T  S+  ACA +  LSLG   H + ++ C
Sbjct: 267 MINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC 326

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 +V+ +N+L+DMY KCG+L+ A +VF  M    + SW SII  +   G    A+ 
Sbjct: 327 ---FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIG 383

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            FD +   +   P+  T   ++ AC     + +GRD    +I    +   L     L+++
Sbjct: 384 LFDEM-QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINM 441

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            A+ G+++EA  + S +P+K D V W +++
Sbjct: 442 YAKCGSVEEARLVFSKIPVK-DIVSWNTMI 470



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 136/283 (48%), Gaps = 7/283 (2%)

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           +++   L+ CA   +   GK+ H+ I   G+  D  +   L+  Y +CG L    K+FD 
Sbjct: 95  NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDK 154

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           ++   +  WN+++  + + G F  ++ LF++MQ L    + YTF  +    A L  +   
Sbjct: 155 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 214

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H Y+L+       ++  V NSLI  Y K G ++ A  +F+ + + D+ SWNS+I G 
Sbjct: 215 KRVHGYVLK---LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 271

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            ++G +   L+ F ++++      +  T V VL AC + G +S GR      +       
Sbjct: 272 VVNGFSGNGLEIFIQMLI-LGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE 330

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           V+     L+D+ ++ GN++ A  +   M      V W S++ A
Sbjct: 331 VV-FSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAA 371


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 339/581 (58%), Gaps = 17/581 (2%)

Query: 43  CKSMSQLKQIHAQALRTALPQ--QHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
           C S+ + ++ HA+ ++  L +  +H   L+ +  +       + YA  +F  +++P +F 
Sbjct: 41  CASLDEARKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFD 100

Query: 101 WNTLIR---ACARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           +NTL+R   A        P A + LF  M++ G V PD +TFPF  KACA L A  +G+Q
Sbjct: 101 YNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDG-VEPDSYTFPFVFKACAQLGALQEGRQ 159

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQF 214
              H+ K G   D +  NSLI FY  CG  DLA + F+ M   E++  SW+ ++ A+ + 
Sbjct: 160 LQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRA 219

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G +   ++ F  M +  + PD  +  S  SACA L    +G   H  +LR+   +   + 
Sbjct: 220 GRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRN---TARLNT 276

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            ++ SL+DMY KCG ++ A  VF++M  ++  ++++++ G ALHG    AL+ FD +V  
Sbjct: 277 FMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMV-R 335

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           E   P++  +VGVL+AC+  G++ EG   FD M  E+ +TP  +HYGC+VDL+ARAG +D
Sbjct: 336 EGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLD 395

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           +A  L+ NMP  P    WRSLL+A C+ H ++ L+E  A Q +E  G   +G Y++LS +
Sbjct: 396 DARALIGNMPTGPTDTAWRSLLNA-CRIHGNLELAER-ALQELERLGATNAGDYIILSDM 453

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           +A A   +     R    D+G+ + PG S++E+ G  H F + D SHP+   IY  L  +
Sbjct: 454 HARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQM 513

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
           + +L+  GYTPD S+ A+ D  ++ K+  +  HS++LA+A G+L+   G P+RV  NLR+
Sbjct: 514 EWQLRFEGYTPDTSELAL-DAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRM 572

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K+CH  + LIS IF  EI+VRDR RFH FK G+CSC +YW
Sbjct: 573 SKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 327/576 (56%), Gaps = 47/576 (8%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +AS   ++YA  VF ++ + +  TWNT+I    R      +A  LF+ M +  NV+PD+ 
Sbjct: 156 YASCGRINYARNVFDEMSHRDVVTWNTMIERYCR-FGLVDEAFKLFEEM-KDSNVMPDEM 213

Query: 137 TFPFALKACA-----------YLFAFSQGKQAHAHI--------------------FKRG 165
                + AC            Y F      +   H+                    F++ 
Sbjct: 214 ILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
            V +++++ +++  Y+ CG LD A  +FD   ++ LV W  MI A+V+      AL++F 
Sbjct: 274 SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFE 333

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            M     +PD  +  S+ SACA L  L    W H+ I  H +  L +++ +NN+LI+MY 
Sbjct: 334 EMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCI--HVN-GLESELSINNALINMYA 390

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG LD  R VFE MP+R++ SW+S+I   ++HG A  AL  F R+  +E+  PN +TFV
Sbjct: 391 KCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMK-QENVEPNEVTFV 449

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVL  C+H G+V EG+  F  M +EYNITP LEHYGC+VDL  RA  + EAL ++ +MP+
Sbjct: 450 GVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPV 509

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
             + VIW SL+ A C+ H  + L +  AK+++E E     G  VL+S +YA  +RW DV 
Sbjct: 510 ASNVVIWGSLMSA-CRIHGELELGKFAAKRILELEPDH-DGALVLMSNIYAREQRWEDVR 567

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            +R++M +K V KE G S I+ +G +HEF  GD  H Q+ +IY  LD +  KLK  GY P
Sbjct: 568 NIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVP 627

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP------IRVFKNLRVCKDCH 578
           D   + +VD  ++ K+  +  HSE+LA+  G++N +          IR+ KNLRVC+DCH
Sbjct: 628 D-CGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCH 686

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              KL+S+++  EIIVRDR RFH +K+G CSC DYW
Sbjct: 687 LFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 199/414 (48%), Gaps = 37/414 (8%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +++L  L+ CKS++ +KQ+HA  LRT +  +  + L    +   +S  +L YA  VF  I
Sbjct: 13  NTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVS--SSSINLSYALNVFSSI 70

Query: 94  ENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
            +P  S  +N  +R  +RS  ++P+A +LF + I       D+ +F   LKA + + A  
Sbjct: 71  PSPPESIVFNPFLRDLSRS--SEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALF 128

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           +G + H   FK   + D ++    +  YASCG ++ A  VFD M  R +V+WN MI+ + 
Sbjct: 129 EGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYC 188

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-------H 264
           +FG  D A KLF  M+     PD     +I SAC     +      + +++        H
Sbjct: 189 RFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTH 248

Query: 265 CDHSLVT---------------------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
              +LVT                     ++ V+ +++  Y KCG LD A+ +F+   K+D
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           L  W ++I  +      + AL+ F+ +       P+ ++   V+SAC + G++ + + + 
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCC-SGIKPDVVSMFSVISACANLGILDKAK-WV 366

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              I+   +   L     L+++ A+ G +D    +   MP + + V W S+++A
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRR-NVVSWSSMINA 419


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 338/595 (56%), Gaps = 17/595 (2%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           R E    N  ++L+ L  C    QL   K+IH  A R    +    L+  + +  +A  +
Sbjct: 393 REEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDE--LVANAFVAAYAKCS 450

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            LD A RVF  +E     +WN LI A A++     +++ LF  M++ G + PD+ T    
Sbjct: 451 SLDCAERVFCGMEGKTVSSWNALIGAHAQN-GFPGKSLDLFLVMMDSG-MDPDRFTIGSL 508

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L ACA L     GK+ H  + + GL  D +I  SL+  Y  C  + L   +FD M  +SL
Sbjct: 509 LLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSL 568

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           V WNVMI  F Q      AL  FR+M     +P       +  AC+ ++ L LG   H++
Sbjct: 569 VCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSF 628

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
            L+     L  D  V  +LIDMY KCG ++ ++ +F+ + ++D   WN II G+ +HG  
Sbjct: 629 ALKA---HLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHG 685

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             A++ F+ L+  +   P+S TF+GVL ACNH G+V+EG  Y   M N Y + P LEHY 
Sbjct: 686 LKAIELFE-LMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYA 744

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VD+L RAG + EAL LV+ MP +PD+ IW SLL + C+ +  + + EEV+K+++E E 
Sbjct: 745 CVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSS-CRNYGDLEIGEEVSKKLLELEP 803

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
                 YVLLS +YA   +W++V  VR+ M + G+ K+ GCS IEI G+ + F   D S 
Sbjct: 804 NKAEN-YVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSL 862

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL-DDGKQSSLRLHSERLAIALGILNL 559
            ++K+I      +++K+   GY PD S   ++ EL ++GK   L+ HSE+LAI+ G+LN 
Sbjct: 863 SESKKIQQTWIKLEKKISKIGYKPDTS--CVLHELEEEGKIKILKSHSEKLAISFGLLNT 920

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G  +RV KNLR+C DCH   KL+S++   +IIVRD  RFHHFK+G C+C D+W
Sbjct: 921 AKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 154/311 (49%), Gaps = 13/311 (4%)

Query: 50  KQIHA----QALRTALPQQHKTLLIYSRIIHFASFADLDYAFR-VFYQIENPNSFTWNTL 104
           K IH      AL +A  +    +++ +RII   S        R VF   +  + F +N L
Sbjct: 106 KNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNAL 165

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           +   +R+   +  AI LF  ++   ++ PD  T P   KACA +     G+  HA   K 
Sbjct: 166 LSGYSRNALFR-DAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKA 224

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G  SD ++ N+LI  Y  CG ++ A KVF+ M  R+LVSWN ++ A  + G F     +F
Sbjct: 225 GGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVF 284

Query: 225 RRMQILFE----PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           +R+ I  E    PD  T  ++  ACA +  + +GM  H    +     +  +V VNNSL+
Sbjct: 285 KRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFK---LGITEEVTVNNSLV 341

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG L  AR +F+    +++ SWN+II G++  G      +    +  EE    N 
Sbjct: 342 DMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNE 401

Query: 341 ITFVGVLSACN 351
           +T + VL AC+
Sbjct: 402 VTVLNVLPACS 412



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 184/396 (46%), Gaps = 13/396 (3%)

Query: 24  NRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASF 80
           +  EG   + +++++ +  C ++ +++    +H  A +  + ++    +  S +  ++  
Sbjct: 290 SEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEE--VTVNNSLVDMYSKC 347

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             L  A  +F      N  +WNT+I   ++  D +     L Q M  +  V  ++ T   
Sbjct: 348 GYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRG-VFELLQEMQREEKVRVNEVTVLN 406

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC+        K+ H + F+ G + D  + N+ +  YA C  LD A +VF  M  ++
Sbjct: 407 VLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKT 466

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFR-RMQILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           + SWN +I A  Q G    +L LF   M    +PD +T  S+  ACA L  L  G   H 
Sbjct: 467 VSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHG 526

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           ++LR   + L  D  +  SL+ +Y +C S+ + + +F+ M  + L  WN +I GF+ +  
Sbjct: 527 FMLR---NGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNEL 583

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL  F R ++     P  I   GVL AC+    +  G++     +  + ++      
Sbjct: 584 PCEALDTF-RQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH-LSEDAFVT 641

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             L+D+ A+ G ++++ ++   +  K +AV W  ++
Sbjct: 642 CALIDMYAKCGCMEQSQNIFDRVNEKDEAV-WNVII 676


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 349/603 (57%), Gaps = 24/603 (3%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H +  N   +     H +LL S    ++   L+Q+HA  + + L   H++  + +++I  
Sbjct: 79  HPVTRNFDTQSHSPVHEALLRSGPRLRN---LQQVHAHIIVSGL---HRSRSLLTKLISL 132

Query: 78  ASFA-DLDYAFRVFYQIENPNSFTWNTLIRACAR---SVDAKPQAIVLFQRMIEQGNVLP 133
              A  + YA R+F  + NP+SF +++L++  ++   S+D     ++ ++RM+  G    
Sbjct: 133 VCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT----VLFYRRMLFSG-APQ 187

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
             +TF   +KACA L A   GK+ H+H+   G  SD+Y+  +LI  YA    + +A KVF
Sbjct: 188 SNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVF 247

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFR-RMQILFEPDGYTFQSITSACAGLATLS 252
           D M +R++++WN +I  + Q G    ++ LF   M+  F+PD  T  S+ S+C+ L  L 
Sbjct: 248 DAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD 307

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G W H Y      +    +V++  SLI+MY +CG++  AR+VF+SM +R++ +W ++I 
Sbjct: 308 FGCWLHDYA---DGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMIS 364

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+ +HG    A++ F  +       PN+ITFV VLSAC H G++ +GR  F  M   Y +
Sbjct: 365 GYGMHGYGRQAMELFTEMRAYGP-RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGL 423

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSN-MPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            P +EH  C+VD+  RAG +++A   +   +P +P   +W S+L AC + H +  L  +V
Sbjct: 424 VPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGAC-RMHRNFDLGVKV 482

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+ V+  E     G YV+LS +YA A R + V +VR +MT + + K+ G S+IEI+   +
Sbjct: 483 AEHVLSVEPE-NPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTY 541

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F  GD SHPQT  IY +LD +  +    GY P   ++ M D  ++ +  +LR HSE+LA
Sbjct: 542 LFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPA-PESLMHDLEEEERDYALRYHSEKLA 600

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           +A G+L    G  IR+ KNLR+C+DCH   K IS I + EIIVRD+ RFHHFKDGSCSC+
Sbjct: 601 LAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCL 660

Query: 612 DYW 614
           DYW
Sbjct: 661 DYW 663


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 349/603 (57%), Gaps = 24/603 (3%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H +  N   +     H +LL S    ++   L+Q+HA  + + L   H++  + +++I  
Sbjct: 15  HPVTRNFDTQSHSPVHEALLRSGPRLRN---LQQVHAHIIVSGL---HRSRSLLTKLISL 68

Query: 78  ASFA-DLDYAFRVFYQIENPNSFTWNTLIRACAR---SVDAKPQAIVLFQRMIEQGNVLP 133
              A  + YA R+F  + NP+SF +++L++  ++   S+D     ++ ++RM+  G    
Sbjct: 69  VCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT----VLFYRRMLFSG-APQ 123

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
             +TF   +KACA L A   GK+ H+H+   G  SD+Y+  +LI  YA    + +A KVF
Sbjct: 124 SNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVF 183

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFR-RMQILFEPDGYTFQSITSACAGLATLS 252
           D M +R++++WN +I  + Q G    ++ LF   M+  F+PD  T  S+ S+C+ L  L 
Sbjct: 184 DAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD 243

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G W H Y      +    +V++  SLI+MY +CG++  AR+VF+SM +R++ +W ++I 
Sbjct: 244 FGCWLHDYA---DGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMIS 300

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+ +HG    A++ F  +       PN+ITFV VLSAC H G++ +GR  F  M   Y +
Sbjct: 301 GYGMHGYGRQAMELFTEMRAYGP-RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGL 359

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSN-MPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
            P +EH  C+VD+  RAG +++A   +   +P +P   +W S+L AC + H +  L  +V
Sbjct: 360 VPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGAC-RMHRNFDLGVKV 418

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+ V+  E     G YV+LS +YA A R + V +VR +MT + + K+ G S+IEI+   +
Sbjct: 419 AEHVLSVEPE-NPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTY 477

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F  GD SHPQT  IY +LD +  +    GY P   ++ M D  ++ +  +LR HSE+LA
Sbjct: 478 LFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPA-PESLMHDLEEEERDYALRYHSEKLA 536

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           +A G+L    G  IR+ KNLR+C+DCH   K IS I + EIIVRD+ RFHHFKDGSCSC+
Sbjct: 537 LAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCL 596

Query: 612 DYW 614
           DYW
Sbjct: 597 DYW 599


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 339/580 (58%), Gaps = 15/580 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIE-N 95
           L  C SM +L++IH+  +   L Q H +  I++ ++ F + +    L +A  +F   + +
Sbjct: 12  LQGCNSMKKLRKIHSHVIINGL-QHHPS--IFNHLLRFCAVSVTGSLSHAQLLFDHFDSD 68

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P++  WN LIR  + S  +   +I+ + RM+      PD  TF FALK+C  + +  +  
Sbjct: 69  PSTSDWNYLIRGFSNS-SSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL 127

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           + H  + + G + D  +  SL+  Y++ G +++A+KVFD M  R LVSWNVMI  F   G
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187

Query: 216 EFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + AL +++RM       D YT  ++ S+CA ++ L++G+  H      CD    + V 
Sbjct: 188 LHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIA---CDIRCESCVF 244

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V+N+LIDMY KCGSL+ A  VF  M KRD+ +WNS+I+G+ +HG    A+ +F R +V  
Sbjct: 245 VSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFF-RKMVAS 303

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              PN+ITF+G+L  C+H+G+V EG ++F++M +++++TP ++HYGC+VDL  RAG ++ 
Sbjct: 304 GVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLEN 363

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           +L ++       D V+WR+LL +C K H ++ L E   K++++ E    +G YVL++ +Y
Sbjct: 364 SLEMIYASSCHEDPVLWRTLLGSC-KIHRNLELGEVAMKKLVQLEA-FNAGDYVLMTSIY 421

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           ++A        +RKL+    +   PG S IEI    H+F   D  HP++  IY  L  + 
Sbjct: 422 SAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVI 481

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +    GY P+ S        D    S+   HSE+LAIA G++    G  +R+ KNLRVC
Sbjct: 482 NRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVC 541

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +DCH  TK +S+ FN EIIVRDR RFHHF DG CSC DYW
Sbjct: 542 RDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 343/610 (56%), Gaps = 30/610 (4%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           F++ R    +   SS   ++  C S+  +   KQ H QA       Q    +  + I+ +
Sbjct: 64  FSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAF--VFGYQSDIFVSSALIVMY 121

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN-----VL 132
           ++   L+ A +VF +I   N  +W ++IR    + +A   A+ LF+ ++ + N     + 
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNA-LDAVSLFKDLLIEENDDDATMF 180

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH--LDLAN 190
            D       + AC+ + A    +  H+ + KRG    V + N+L+  YA  G   + +A 
Sbjct: 181 LDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           K+FD ++++  VS+N ++  + Q G  + A  +FRR   L +    TF  IT +   LA 
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRR---LIKEKVVTFNCITLSTVLLAV 297

Query: 251 -----LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
                L +G   H  ++R     L  DV+V  S+IDMYCKCG ++ AR  F+ M  +++ 
Sbjct: 298 SHSGALRIGKCIHDQVIRM---GLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVR 354

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SW ++I G+ +HG A  AL+ F  ++ +    PN ITFV VL+AC+H G+   G  +F+ 
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMI-DSGVRPNYITFVSVLAACSHAGLHDVGWHWFNA 413

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M   + + P LEHYGC+VDLL RAG + +A  L+  M M+PD++IW SLL A C+ H +V
Sbjct: 414 MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLL-AACRIHKNV 472

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L+E    ++ E +   C G Y+LLS +YA + RW DV  VR  M ++G+ K PG S +E
Sbjct: 473 ELAEISVARLFELDPSNC-GYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLE 531

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLR 544
           ++G  H F  GD  HPQ ++IY FL  ++ KL   GY  + S     VDE  + K+ +LR
Sbjct: 532 LNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE--EEKEMTLR 589

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
           +HSE+LAIA GI+N  PG  + V KNLRVC DCH V KLIS+I + E +VRD  RFHHFK
Sbjct: 590 VHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFK 649

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 650 DGFCSCGDYW 659



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 176/345 (51%), Gaps = 16/345 (4%)

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ-IENPNSFTWNTLIRACARSVDAKPQAI 119
           +P +       SR++H     +      +F + ++  + F+WN++I   ARS D+  +A+
Sbjct: 3   VPSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEAL 61

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             F  M  + ++ P + +FP A+KAC+ L     GKQ H   F  G  SD++++++LI  
Sbjct: 62  RAFSSM-RKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVM 120

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYT-- 237
           Y++CG L+ A KVFD + +R++VSW  MI  +   G    A+ LF+ + I    D  T  
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMF 180

Query: 238 -----FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC--GSLD 290
                  S+ SAC+ +A   L    H+++++         V V N+L+D Y K   G + 
Sbjct: 181 LDSMGMVSVISACSRVAAKGLTESIHSFVIK---RGFDRGVSVGNTLLDAYAKGGEGGVA 237

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           +AR++F+ +  +D  S+NSI+  +A  G +  A   F RL+ E+  + N IT   VL A 
Sbjct: 238 VARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAV 297

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           +H G +  G+   D +I       V+     ++D+  + G ++ A
Sbjct: 298 SHSGALRIGKCIHDQVIRMGLEDDVIVGTS-IIDMYCKCGRVETA 341


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 329/552 (59%), Gaps = 16/552 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           H+SL+S   +   +    ++  ++        H+ ++ Y+ +I  +AS   ++ A ++F 
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDES-------PHRDVVSYTALIKGYASRGYIENAQKMFD 181

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +  +WN +I   A + + K +A+ LF+ M++  NV PD+ T    + ACA   + 
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYK-EALELFKDMMKT-NVRPDESTMVTVVSACAQSGSI 239

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+Q H+ I   G  S++ I N+LI  Y+ CG L+ A  +F+ +  + ++SWN +I  +
Sbjct: 240 ELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGY 299

Query: 212 VQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                +  AL LF+ M    E P+  T  SI  ACA L  + +G W H YI +     + 
Sbjct: 300 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK-GVA 358

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               +  SLIDMY KCG ++ A QVF S+  + L+SWN++I GFA+HGRA+A+   F R+
Sbjct: 359 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRM 418

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ ITFVG+LSAC+H GM+  GR  F  M  +Y +TP LEHYGC++DLL  +G
Sbjct: 419 R-KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSG 477

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
              EA  +++ M M+PD VIW SLL AC K H +V L E  A+ +I+ E     G YVLL
Sbjct: 478 LFKEAEEMINTMEMEPDGVIWCSLLKAC-KMHGNVELGESFAQNLIKIEPE-NPGSYVLL 535

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A RWN+V   R L+ DKG+ K PGCSSIEID + HEF  GD  HP+ ++IYG L
Sbjct: 536 SNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 595

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + ++  L+  G+ PD S+     E ++ K+ +LR HSE+LAIA G+++ KPG  + + KN
Sbjct: 596 EEMEVLLEEAGFVPDTSEVLQEME-EEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 654

Query: 571 LRVCKDCHEVTK 582
           LRVC++CHE  K
Sbjct: 655 LRVCRNCHEAYK 666



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 207/408 (50%), Gaps = 49/408 (12%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDYAFRVFYQIENPNSFTW 101
           +  L+ IHAQ ++T L   H T    S++I F      F  L YA  VF  I+ PN   W
Sbjct: 3   LQSLRMIHAQMIKTGL---HNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIW 59

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           NT+ R  A S D    A+ L+  MI  G +LP+ +TFPF LK+CA   AF +G+Q H H+
Sbjct: 60  NTMFRGHALSSDP-VSALKLYVCMISLG-LLPNSYTFPFLLKSCAKSKAFKEGQQIHGHV 117

Query: 162 FKRGLVSDVYINNSLIHF-------------------------------YASCGHLDLAN 190
            K G   D+Y++ SLI                                 YAS G+++ A 
Sbjct: 118 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQ 177

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR-RMQILFEPDGYTFQSITSACAGLA 249
           K+FD +  + +VSWN MI  + + G +  AL+LF+  M+    PD  T  ++ SACA   
Sbjct: 178 KMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 237

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           ++ LG   H++I    DH   +++ + N+LID+Y KCG L+ A  +FE +P +D+ SWN+
Sbjct: 238 SIELGRQVHSWI---DDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNT 294

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+      + AL  F  + +    +PN +T + +L AC H G +  GR +  V I++
Sbjct: 295 LIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGR-WIHVYIDK 352

Query: 370 --YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               +         L+D+ A+ G+I EA H V N  +      W +++
Sbjct: 353 RLKGVANASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSSWNAMI 399


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/608 (38%), Positives = 336/608 (55%), Gaps = 58/608 (9%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +Q HAQ +   L  Q    L    +  +AS  DLD A  VF +I+NP+S  +N++IRA  
Sbjct: 97  QQAHAQIVLHGL--QPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154

Query: 110 RSVDAKPQAIVL--FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
           R          L  + RM   G +L D  T PF LK+CA L     G+  H    + GL 
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLG-LLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLE 213

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            D Y+  SLI  Y  CG +  A K+FD M+ R + SWN +I  +++ GE   A  LF RM
Sbjct: 214 GDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERM 273

Query: 228 Q------------------------ILFE----------PDGYTFQSITSACAGLATLSL 253
           +                         LF+          P+  T  S+  ACA  A L  
Sbjct: 274 EHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALER 333

Query: 254 GMWAHAY---ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWN 308
           G   H +   I  H + S      V  +L  MY KC SL  AR  F+ + +  ++L +WN
Sbjct: 334 GRRIHDFANGIGLHLNSS------VQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 387

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           ++I  +A HG    A+  F+ ++      P+++TF+G+LS C+H G++  G ++F+ M  
Sbjct: 388 TMITAYASHGCGVEAVSIFENML-RAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 446

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
            +++ P +EHY C+VDLL RAG + EA  L+S MPM+    +W +LL A C+ H ++ ++
Sbjct: 447 IHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALL-AACRSHRNLEIA 505

Query: 429 EEVAKQ--VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           E  A++  V+E +    SG YVLLS +YA A  W +V  +R L+  +G+ K PGCS IEI
Sbjct: 506 ELAARRLFVLEPDN---SGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEI 562

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           +G +H F   D SHPQ K+IY FL+ + EK+K  GY PD S   + D  ++ K+ +L  H
Sbjct: 563 NGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTS-FVLHDISEEEKEYNLTTH 621

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LAIA G+LN +PG+ +RV KNLR+C DCH  TK IS+I+  EIIVRD  RFH FKDG
Sbjct: 622 SEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDG 681

Query: 607 SCSCMDYW 614
           SCSC DYW
Sbjct: 682 SCSCGDYW 689



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 142/336 (42%), Gaps = 74/336 (22%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+QAHA I   GL  + ++   ++  YAS G LD A  VFD +   S + +N +I A+ +
Sbjct: 96  GQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 214 FGEFDSA---LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
            G        L+ + RM  L    D +T   +  +CA L+ + +G   H   LR     L
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRV---GL 212

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR---------- 319
             D  V  SLIDMY KCG +  AR++F+ M  RD+ SWN++I G+   G           
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 320 ---------------------AEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVS 357
                                AE AL  FD ++ + S   PN +T V VL AC     + 
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 358 EGRDYFD------VMINEYNITPVLEHYG---------CLVDLLARAG-NI--------- 392
            GR   D      + +N    T +   Y          C  D++A+ G N+         
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 393 -------DEALHLVSNM---PMKPDAVIWRSLLDAC 418
                   EA+ +  NM    ++PDAV +  LL  C
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGC 428



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 139/318 (43%), Gaps = 24/318 (7%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           EG F   +SL+    +C  +   +++  + +   +   +  +  Y +        ++  A
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMK------EGEIGVA 266

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKAC 145
             +F ++E+ N  +W  +I    ++  A+ QA+ LF  M++ G+ + P+  T    L AC
Sbjct: 267 EDLFERMEHRNIVSWTAMISGYTQNGFAE-QALGLFDEMLQDGSEMKPNWVTIVSVLPAC 325

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVS 203
           A   A  +G++ H      GL  +  +  +L   YA C  L  A   FD + +  ++L++
Sbjct: 326 AQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIA 385

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI A+   G    A+ +F  M +   +PD  TF  + S C+    +  G       L
Sbjct: 386 WNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG-------L 438

Query: 263 RHCD-----HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFAL 316
            H +     HS+   V     ++D+  + G L  A+++   MP +   S W +++     
Sbjct: 439 NHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRS 498

Query: 317 HGRAEAALKYFDRLVVEE 334
           H   E A     RL V E
Sbjct: 499 HRNLEIAELAARRLFVLE 516


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/540 (42%), Positives = 319/540 (59%), Gaps = 19/540 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-----ASFADLDYAFRVF 90
           LL  L  C S+  L Q+HA A+++ L   H  L+  +R++       A+ A L YA +VF
Sbjct: 22  LLPHLPHCTSLRALAQLHAAAVKSGL-GAHPALV--TRLLTLCTKQGAAPAHLAYARQVF 78

Query: 91  YQIENPNSFTW-NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            +I  P    W NTL+R  ARS D   +A  +  RM+E+G V PD +TF   LKACA   
Sbjct: 79  DRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEG-VAPDTYTFVSLLKACAAAR 137

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-LVSWNVMI 208
           A  +G+QAH    K G     Y+  +LI+ YA CG    A  +F  +     +VS+N MI
Sbjct: 138 AGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMI 197

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A V+      AL LFR MQ    +P   T  S+ SACA L  L LG W H Y+ +    
Sbjct: 198 TAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLD 257

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           SLV    VN +LIDMY KCGSL+ A  VF+ M  RD  +W+ +I+ +A H     A+  F
Sbjct: 258 SLVK---VNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSYGREAISLF 314

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +  ++   P+++TF+GVL AC+H GMVSEG  YFD M  EY I P ++HYGC+ DLLA
Sbjct: 315 EEMK-KQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVPGIKHYGCVTDLLA 372

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R+G +++A   +  +P++P A++WR+LL AC   H +V L + V ++++E +    S  Y
Sbjct: 373 RSGQLEKAYKFIDELPIQPTAILWRTLLSAC-GSHGAVDLGKRVFERILELDDTHGSD-Y 430

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           V+ S + A+  +W ++  VRKLM +KGV K PGCSSIEID   HEFFAGD  HPQ++   
Sbjct: 431 VIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDNRVHEFFAGDGRHPQSQDAR 490

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             +D + E+LK  GY P+ SQ   V+  ++ K +SLR HSE+LAI+ G+LN  PG  +RV
Sbjct: 491 RMVDQVIEQLKLVGYVPNTSQVFHVEMGEEEKATSLRYHSEKLAISFGLLNTSPGTTLRV 550


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/582 (38%), Positives = 335/582 (57%), Gaps = 18/582 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFR 88
           +N +S LL   T    + Q + +HA  + +     H  L++ + I++ +A    LD A R
Sbjct: 87  YNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNH--LVLQNIIVNMYAKCGCLDDARR 144

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +F ++   +  TW  LI     S + +P+ A++LF +M+  G   P+  T    LKA   
Sbjct: 145 MFDEMPTKDMVTWTALI--AGFSQNNRPRDALLLFPQMLRLG-FQPNHFTLSSLLKASGS 201

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                 G Q HA   K G  S VY+ ++L+  YA CGH+D A   FD M  +S VSWN +
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I    + GE + AL L  +MQ   F+P  +T+ S+ SACA +  L  G W HA++++   
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKS-- 319

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L     + N+L+DMY K GS+D A++VF+ + K D+ SWN+++ G A HG  +  L  
Sbjct: 320 -GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F++++      PN I+F+ VL+AC+H G++ EG  YF++M  +Y + P + HY   VDLL
Sbjct: 379 FEQML-RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLL 436

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R G +D A   +  MP++P A +W +LL AC + H ++ L    A++  E +    SG 
Sbjct: 437 GRVGLLDRAERFIREMPIEPTAAVWGALLGAC-RMHKNMELGVYAAERAFELDPH-DSGP 494

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            +LLS +YASA RW DV  VRK+M + GV K+P CS +EI+   H F A D +HP+ K+I
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEI 554

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
            G  + I  K+K  GY PD S   + VD+ +  ++  L+ HSE+LA+A  +LN   G PI
Sbjct: 555 RGKWEEISGKIKEIGYVPDTSHVLLFVDQQE--REEKLQYHSEKLALAFALLNTPTGSPI 612

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           R+ KN+RVC DCH   K +S++ + EIIVRD  RFH F+DGS
Sbjct: 613 RIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 159/298 (53%), Gaps = 8/298 (2%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD-VYINNSLIHFYASC 183
           +I++G+++PD + +   LK C  L    QG+  HAH+     + + + + N +++ YA C
Sbjct: 77  LIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC 136

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSIT 242
           G LD A ++FD M  + +V+W  +I  F Q      AL LF +M ++ F+P+ +T  S+ 
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLL 196

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            A      L  G   HA+ L++   S    V V ++L+DMY +CG +D A+  F+ MP +
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQS---SVYVGSALVDMYARCGHMDAAQLAFDGMPTK 253

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
              SWN++I G A  G  E AL    ++   ++F P   T+  VLSAC   G + +G+  
Sbjct: 254 SEVSWNALISGHARKGEGEHALHLLWKM-QRKNFQPTHFTYSSVLSACASIGALEQGKWV 312

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              MI    +  +      L+D+ A+AG+ID+A  +   + +KPD V W ++L  C +
Sbjct: 313 HAHMIKS-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQ 368


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 322/583 (55%), Gaps = 15/583 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S+L ++ +  ++ Q K IHA  +R         +L  + +  +A    L YA ++F  + 
Sbjct: 215 SILPTIGQANALHQGKAIHAYYIRNFFFD--NVVLQTALLDMYAKCHLLFYARKIFNTVN 272

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             N   W+ +I       D+   A+ L+  M+    + P   T    L+ACA L    +G
Sbjct: 273 KKNDVCWSAMIGGYVLH-DSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG 331

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K+ H H+ K G+  D  + NSLI  YA CG +D A    D M+ +  VS++ +I   VQ 
Sbjct: 332 KKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQN 391

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  + AL +FR+MQ     P   T  ++  AC+ LA L  G   H Y +         D 
Sbjct: 392 GYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVR---GFTNDT 448

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            + N++IDMY KCG + I+R++F+ M  RD+ SWN++I+G+ +HG    AL  F  L   
Sbjct: 449 SICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQAL 508

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ +T + VLSAC+H G+V+EG+ +F  M   +NI P + HY C+VDLLARAGN+D
Sbjct: 509 -GLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLD 567

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK--QVIESEGGICSGVYVLLS 451
           EA   +  MP  P+  IW +LL A C+ H ++ + E+V+K  Q++  EG   +G +VL+S
Sbjct: 568 EAYTFIQRMPFVPNVRIWGALL-AACRTHKNIEMGEQVSKKIQLLGPEG---TGNFVLMS 623

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +Y+S  RW+D   +R +    G  K PGCS +EI G+ H F  G  SHPQ+  I   L 
Sbjct: 624 NIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQ 683

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +  ++K  GY  D S   + D  ++ K+  L  HSE++AIA GILN  P   I V KNL
Sbjct: 684 ELLVQMKKLGYRAD-SSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNL 742

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+C DCH   K I+ +   EI VRD +RFHHFKDG C+C D+W
Sbjct: 743 RICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 12/343 (3%)

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           ++  A  VF QI  P+   WN +IR  A S   + Q+I L+  M++ G V P   TFPF 
Sbjct: 56  EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQ-QSIYLYLHMLQLG-VTPTNFTFPFL 113

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LER 199
           LKAC+ L A   G+  H H    GL  D+Y++ +L+H YA CGHL  A  +F+++   +R
Sbjct: 114 LKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR 173

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAH 258
            +V+WN MI AF         +    +MQ     P+  T  SI         L  G   H
Sbjct: 174 DIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIH 233

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           AY +R   +    +V++  +L+DMY KC  L  AR++F ++ K++   W+++I G+ LH 
Sbjct: 234 AYYIR---NFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLE 377
               AL  +D ++     +P   T   +L AC     +  G+     MI    ++   + 
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           +   L+ + A+ G +D A+  +  M  K D V + +++  C +
Sbjct: 351 N--SLISMYAKCGIMDNAVGFLDEMIAK-DTVSYSAIISGCVQ 390



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 13/247 (5%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFE 232
             L  ++ S   + LA  VFD + + S+V WN+MI  +   G F  ++ L+  M Q+   
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 233 PDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
           P  +TF  +  AC+ L  L LG  +  HA+IL      L  D+ V+ +L+ MY KCG L 
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHIL-----GLSMDLYVSTALLHMYAKCGHLY 159

Query: 291 IARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
            A+ +F S+    RD+ +WN++I  F+ H      +    ++  +   +PNS T V +L 
Sbjct: 160 QAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQM-QQAGVTPNSSTLVSILP 218

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
                  + +G+      I  +    V+     L+D+ A+   +  A  + + +  K D 
Sbjct: 219 TIGQANALHQGKAIHAYYIRNFFFDNVVLQTA-LLDMYAKCHLLFYARKIFNTVNKKND- 276

Query: 409 VIWRSLL 415
           V W +++
Sbjct: 277 VCWSAMI 283


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 333/581 (57%), Gaps = 17/581 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           LL    +C S+     + +Q L   +P+  + L  ++ +I  +A    L  A  +F ++ 
Sbjct: 111 LLEMYAKCDSL-----MDSQKLFDEMPE--RDLCSWNILISGYAKMGLLQEAKSLFDKMP 163

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             ++F+W  +I    R  D   +A+ LF+ M    N   +K T   AL A A +     G
Sbjct: 164 ERDNFSWTAMISGYVRH-DRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIG 222

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K+ H +I + GL SD  + ++L   Y  CG ++ A  +FD M++R +V+W  MID + Q 
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G       LF  + +    P+ +TF  + +ACA   +  LG   H Y+ R          
Sbjct: 283 GRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRV---GFDPFS 339

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
              ++L+ MY KCG++  A +VF+  P+ DL SW S+I G+A +G+ + A++YF+ L+V+
Sbjct: 340 FAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFE-LLVK 398

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ ITFVGVLSAC H G+V +G DYF  +  +Y +T   +HY C++DLLAR+G  D
Sbjct: 399 SGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA +++S M MKPD  +W SLL  C + H ++ L++  A+ + E E       YV L+ +
Sbjct: 459 EAENIISKMSMKPDKFLWASLLGGC-RIHGNLKLAQRAAEALFEIEPE-NPATYVTLANI 516

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA+A  W++V  +RK M D+GV K+PG S I I    H F  GD SHP++K+I  FL  +
Sbjct: 517 YATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKL 576

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
            +++K  G+ PD +   + D  D+ K+ +L  HSE+LA+A GI++   G PI+VFKNLR 
Sbjct: 577 SKRMKEEGFVPD-TNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRT 635

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH   K IS+I N +IIVRD  RFH F+DG CSC DYW
Sbjct: 636 CVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 158/366 (43%), Gaps = 76/366 (20%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L  A ++ +QI+ P++  ++TLI++C +S            R+++               
Sbjct: 55  LKEALQILHQIDKPSASVYSTLIQSCIKS------------RLLQ--------------- 87

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
                     QGK+ H HI   G V  ++I N L+  YA C  L  + K+FD M ER L 
Sbjct: 88  ----------QGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLC 137

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQ------------------------ILF------- 231
           SWN++I  + + G    A  LF +M                          LF       
Sbjct: 138 SWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSD 197

Query: 232 --EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             + + +T  S  +A A +  L +G   H YI+R     L +D +V ++L DMY KCGS+
Sbjct: 198 NSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMR---TGLDSDEVVWSALSDMYGKCGSI 254

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + AR +F+ M  RD+ +W ++I  +   GR +     F  L +     PN  TF GVL+A
Sbjct: 255 EEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADL-LRSGIRPNEFTFSGVLNA 313

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C ++     G+     M       P       LV + ++ GN+  A  +    P +PD  
Sbjct: 314 CANQTSEELGKKVHGYM-TRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP-QPDLF 371

Query: 410 IWRSLL 415
            W SL+
Sbjct: 372 SWTSLI 377


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 334/602 (55%), Gaps = 28/602 (4%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSR 73
           S  IF   + EG   N  +  S L  C ++      +QIH Q L+T    Q    +    
Sbjct: 422 SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGF--QFNVYVSSVL 479

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A    LD+A ++F +++  +  +W  +I    +  D   +A+ LF+ M +QG +  
Sbjct: 480 IDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQH-DKFTEALNLFKEMQDQG-IKS 537

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D   F  A+ ACA + A  QG+Q HA     G   D+ I N+L+  YA CG +  A   F
Sbjct: 538 DNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAF 597

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D +  +  VSWN ++  F Q G F+ AL +F +M +   E + +TF S  SA A +A + 
Sbjct: 598 DQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVR 657

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           +G   H  I R   +   T+V  +N+LI +Y KCG++D            D+ SWNS+I 
Sbjct: 658 IGKQIHGMI-RKTGYDSETEV--SNALITLYAKCGTID------------DI-SWNSMIT 701

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G++ HG    ALK F+ +   +   PN +TFVGVLSAC+H G+V EG  YF  M   +N+
Sbjct: 702 GYSQHGCGFEALKLFEDMKQLDVL-PNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNL 760

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P  EHY C+VDLL R+G +  A   V  MP++PDA++WR+LL A C  H ++ + E  A
Sbjct: 761 VPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSA-CNVHKNIDIGEFAA 819

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
             ++E E    S  YVL+S +YA + +W+     R++M D+GV KEPG S +E+D   H 
Sbjct: 820 SHLLELEPKD-SATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHA 878

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           FFAGD +HP+   IY +L  +D +    GY P    + + D     K  +  +HSERLAI
Sbjct: 879 FFAGDQNHPRADMIYEYLRGLDFRAAENGYVPR-CNSLLSDAEIRQKDPTEIIHSERLAI 937

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G+L+L    P+ VFKNLRVC+DCH   K +S+I +  IIVRD  RFHHFK GSCSC D
Sbjct: 938 AFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKD 997

Query: 613 YW 614
           YW
Sbjct: 998 YW 999



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 184/407 (45%), Gaps = 46/407 (11%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +SLLS+     ++   KQ H+ A++  +          S I+   S  DL   +     I
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMT---------SDIVVEGSLLDL---YVKCSDI 403

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +  + F        C   +D   ++  +F +M  +G ++P++ T+P  LK C  L A   
Sbjct: 404 KTAHEFFL------CYGQLDNLNKSFQIFTQMQIEG-IVPNQFTYPSILKTCTTLGATDL 456

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H  + K G   +VY+++ LI  YA  G LD A K+F  + E  +VSW  MI  + Q
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +F  AL LF+ MQ    + D   F S  SACAG+  L  G   HA   + C      D
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHA---QSCLSGYSDD 573

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + + N+L+ +Y +CG +  A   F+ +  +D  SWNS++ GFA  G  E AL  F ++  
Sbjct: 574 LSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQM-N 632

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +     NS TF   +SA  +   V  G+     MI +       E    L+ L A+ G I
Sbjct: 633 KAGLEINSFTFGSAVSAAANIANVRIGKQIHG-MIRKTGYDSETEVSNALITLYAKCGTI 691

Query: 393 D------------------EALHLVSNMP---MKPDAVIWRSLLDAC 418
           D                  EAL L  +M    + P+ V +  +L AC
Sbjct: 692 DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSAC 738



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 186/413 (45%), Gaps = 52/413 (12%)

Query: 49  LKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           ++QIHA+ + +    +  T +    I  +     L  A +VF  ++  +S +W  +I   
Sbjct: 183 VEQIHAKTITSGF--ESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGL 240

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
           +++   + +A++LF +++               L AC  +  F  GKQ H  + K+G  S
Sbjct: 241 SQN-GYEEEAMLLFCQIV---------------LSACTKVEFFEFGKQLHGLVLKQGFSS 284

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           + Y+ N+L+  Y+  G+L  A ++F  M +R  VS+N +I    Q G  + AL LF++M 
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMN 344

Query: 229 I-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +   +PD  T  S+ SACA +  L  G   H+Y ++     + +D++V  SL+D+Y KC 
Sbjct: 345 LDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIK---AGMTSDIVVEGSLLDLYVKCS 401

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            +  A + F    + D                   + + F ++ + E   PN  T+  +L
Sbjct: 402 DIKTAHEFFLCYGQLD---------------NLNKSFQIFTQMQI-EGIVPNQFTYPSIL 445

Query: 348 SACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
             C   G    G   +  V+   +     +     L+D+ A+ G +D AL +   +  + 
Sbjct: 446 KTCTTLGATDLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKHGKLDHALKIFRRLK-EN 502

Query: 407 DAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEG-------GICSGVYVL 449
           D V W +++       K   ++ L +E+  Q I+S+          C+G+  L
Sbjct: 503 DVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQAL 555



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 131/319 (41%), Gaps = 52/319 (16%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++EQ  V  +  TF + L+ C    +F  G +                   LI FY + G
Sbjct: 71  LMEQHGVRANSQTFLWLLEGCLNSRSFYDGLK-------------------LIDFYLAFG 111

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            L+ A  VFD M  RSL  WN + + F+          LFRRM     E D   F  +  
Sbjct: 112 DLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLR 171

Query: 244 ACAGLA-TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            C+G A +       HA   +       +   + N LID+Y K G L  A++VFE++  R
Sbjct: 172 GCSGNAVSFRFVEQIHA---KTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 303 DLTSWNSIILGFALHGRAEAAL--------------------KYFDRLVVEESFSPNSIT 342
           D  SW ++I G + +G  E A+                    K    LV+++ FS  +  
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYV 288

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
              +++  +  G +S     F  M     ++     Y  L+  LA+ G I+ AL L   M
Sbjct: 289 CNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRALALFKKM 343

Query: 403 PM---KPDAVIWRSLLDAC 418
            +   KPD V   SLL AC
Sbjct: 344 NLDCQKPDCVTVASLLSAC 362


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 331/578 (57%), Gaps = 25/578 (4%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRVFYQIENP-NSF 99
           +M  +  +HA  ++ A  Q    L + + I+  A+ +       YA  V  +   P + F
Sbjct: 8   NMKSVYNLHATLIKNA--QHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPF 65

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +N +IR  A  + A   A+ LF  M  + NV  D  TFP  LK+             H 
Sbjct: 66  PYNAVIRHVA--LHAPSLALALFSHM-HRTNVPFDHFTFPLILKSSKL-----NPHCIHT 117

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            + K G  S++Y+ N+LI+ Y + G L  + K+FD M  R L+SW+ +I  F + G  D 
Sbjct: 118 LVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDE 177

Query: 220 ALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           AL LF++MQ+      PDG    S+ SA + L  L LG+W HA+I R     +   V + 
Sbjct: 178 ALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRI---GVNLTVSLG 234

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           ++LIDMY +CG +D + +VF+ MP R++ +W ++I G A+HGR   AL+ F  +V E   
Sbjct: 235 SALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMV-ESGL 293

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ I F+GVL AC+H G+V EGR  F  M +EY I P LEHYGC+VDLL RAG + EA 
Sbjct: 294 KPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAF 353

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             V  M ++P++VIWR+LL AC   H  +VL+E+ AK+ I+       G YVLLS  Y  
Sbjct: 354 DFVEGMRVRPNSVIWRTLLGACV-NHNLLVLAEK-AKERIKELDPHHDGDYVLLSNAYGG 411

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
              W     VR  M +  + KEPG S + ID +AHEF +GD SHPQ ++I  FL  + + 
Sbjct: 412 VGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDT 471

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +K  GYTP  ++  + D  ++ K+ SL  HSE+LA+A  +L  +    IRV KNLR+C D
Sbjct: 472 VKLGGYTPS-TKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYD 530

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH   K +S  F+ +I++RDR+RFHHF+ GSCSC D+W
Sbjct: 531 CHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 341/593 (57%), Gaps = 18/593 (3%)

Query: 24  NRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           NR       +S L+       ++ Q + +H          + KT LI + I  +  F  L
Sbjct: 10  NRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGY--EPKTFLINTLINMYVKFGLL 67

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           D A  +F ++ + N  +W T+I A + S +   +A+     M+ +G V P+ +T+   L+
Sbjct: 68  DEARNLFDEMPDRNVVSWTTMISAYSNS-NLNHKALDFLILMLREG-VRPNMYTYSSVLR 125

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           AC  L      +Q H  I K GL SDV++ ++LI  Y+  G    A  VF+ M+   LV 
Sbjct: 126 ACDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVV 182

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN +I  F Q  + D  L L++RM+   F  D  T  S+  AC GLA L LG   H ++L
Sbjct: 183 WNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL 242

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAE 321
           ++       D+++NN+L+DMYCKCGSL+ A  +F  M  ++D+ SW+++I G A +G + 
Sbjct: 243 KY-----DQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSA 297

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            ALK F+ +   +   PN IT +GVL AC+H G+V++G  YF  M   + I P  EHYGC
Sbjct: 298 DALKLFEAMK-SKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGC 356

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           ++DLL RAG +DEA+ L+  M  +PDAV WR LL A C+ H +V L+   AK++++ +  
Sbjct: 357 IIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGA-CRVHKNVDLAIYAAKEILKLDPA 415

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             +G Y+LLS +YA++++W DV  VR+ M  +GV K+PGCS IE+    H F  GD SHP
Sbjct: 416 D-AGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHP 474

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           + ++I   L  + ++L   GY PD +   + D   +  + SL+ HSE+LAI  G+++L  
Sbjct: 475 RIEEIKRELSQLIQRLMRLGYVPD-TNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPN 533

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              I + KNLR+C DCH   KL+S++ N  I++RD  R+HHF+ G CSC DYW
Sbjct: 534 QKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 339/563 (60%), Gaps = 13/563 (2%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ +   LP+  K +++Y+ +I        ++ + R+F+++   +S +W ++I    ++ 
Sbjct: 197 ARKVFDELPE--KNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN- 253

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
                AI +F+ M +  N+  D++TF   L AC  + A  +GKQ HA+I +     ++++
Sbjct: 254 GLDRDAIDIFREM-KLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFV 312

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
            ++L+  Y  C ++  A  VF  M  +++VSW  M+  + Q G  + A+K F  MQ    
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI 372

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           EPD +T  S+ S+CA LA+L  G   HA   R     L++ + V+N+L+ +Y KCGS++ 
Sbjct: 373 EPDDFTLGSVISSCANLASLEEGAQFHA---RALTSGLISFITVSNALVTLYGKCGSIED 429

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           + ++F  +  +D  +W +++ G+A  G+A   +  F+ ++      P+ +TF+GVLSAC+
Sbjct: 430 SHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAH-GLKPDKVTFIGVLSACS 488

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
             G+V +G   F+ MINE+ I P+ +HY C++DL +RAG I+EA + ++ MP  PDA+ W
Sbjct: 489 RAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISW 548

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471
            +LL +C + + ++ + +  A+ ++E +    +  YVLLS VYA+  +W +V  +RK M 
Sbjct: 549 ATLLSSC-RFYGNMDIGKWAAEFLMELDPH-NTASYVLLSSVYAAKGKWEEVARLRKDMR 606

Query: 472 DKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
           DKG+ KEPGCS I+     H F A D S+P + QIY  L+ ++ K+   GY PD + + +
Sbjct: 607 DKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMN-SVL 665

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
            D  D  K   L  HSE+LAIA G+L + PG+PIRV KNLRVC DCH  TK IS+I N E
Sbjct: 666 HDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNRE 725

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           I+VRD ARFH FKDG+CSC D+W
Sbjct: 726 ILVRDTARFHLFKDGTCSCGDFW 748



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 209/450 (46%), Gaps = 71/450 (15%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           N++ +LL    E  + ++ K +H+  ++T LP   +T L+ + I  +A    + YA +VF
Sbjct: 10  NHYCALLKLCCETHNFTKAKNLHSHIIKT-LPYP-ETFLLNNLISSYAKLGSIPYACKVF 67

Query: 91  YQIENPNSFTWNTLIRACARS---------VDAKP---------------------QAIV 120
            Q+ +PN ++WNT++ A ++           DA P                     Q++ 
Sbjct: 68  DQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVK 127

Query: 121 LFQRMIEQ-GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
            +  M++  G+   ++ TF   L   +       G+Q H H+ K G +S V++ + L+  
Sbjct: 128 AYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDM 187

Query: 180 YASCGHLDLANKVFD-------------------------------NMLERSLVSWNVMI 208
           Y+  G +  A KVFD                                M ER  +SW  MI
Sbjct: 188 YSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMI 247

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F Q G    A+ +FR M++   + D YTF S+ +AC G+  L  G   HAYI+R  D+
Sbjct: 248 TGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIR-TDY 306

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
               ++ V ++L+DMYCKC ++  A  VF+ M  +++ SW ++++G+  +G +E A+K F
Sbjct: 307 K--DNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTF 364

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +  +    P+  T   V+S+C +   + EG  +    +    +   +     LV L  
Sbjct: 365 SDM-QKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS-GLISFITVSNALVTLYG 422

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + G+I+++  L + +  K D V W +L+  
Sbjct: 423 KCGSIEDSHRLFNEISFK-DEVTWTALVSG 451



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 13/308 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           IF   + E    +  +  S LT C  +  L   KQ+HA  +RT        + + S ++ 
Sbjct: 262 IFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT---DYKDNIFVASALVD 318

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +    ++  A  VF ++   N  +W  ++    ++     +A+  F  M + G + PD 
Sbjct: 319 MYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQN-GYSEEAVKTFSDMQKYG-IEPDD 376

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    + +CA L +  +G Q HA     GL+S + ++N+L+  Y  CG ++ ++++F+ 
Sbjct: 377 FTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG 254
           +  +  V+W  ++  + QFG+ +  + LF  M     +PD  TF  + SAC+    +  G
Sbjct: 437 ISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKG 496

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILG 313
                 ++   +H +V        +ID++ + G ++ AR     MP   D  SW +++  
Sbjct: 497 NQIFESMIN--EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSS 554

Query: 314 FALHGRAE 321
              +G  +
Sbjct: 555 CRFYGNMD 562



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 62/342 (18%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           LK C     F++ K  H+HI K     + ++ N+LI  YA  G +  A KVFD M   +L
Sbjct: 16  LKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNL 75

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL---------- 251
            SWN ++ A+ + G       LF  M      DG ++ S+ S  AG   +          
Sbjct: 76  YSWNTILSAYSKLGRVSEMEYLFDAMP---RRDGVSWNSLISGYAGCGLIYQSVKAYNLM 132

Query: 252 ---------------------------SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
                                       LG   H ++++      ++ V V + L+DMY 
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKF---GFMSYVFVGSPLVDMYS 189

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K G +  AR+VF+ +P++++  +N++I+G    GR E + + F      E    +SI++ 
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLF-----FEMRERDSISWT 244

Query: 345 GVLSACNHRGMVSEGRDYF------DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
            +++     G+  +  D F      ++ +++Y    VL   G ++ L  + G    A  +
Sbjct: 245 SMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMAL--QEGKQVHAYII 302

Query: 399 VSNMPMKPDAVIWRSLLDACCK----KHASVVLSEEVAKQVI 436
            ++   K +  +  +L+D  CK    K A  V  +   K V+
Sbjct: 303 RTD--YKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVV 342


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/604 (38%), Positives = 341/604 (56%), Gaps = 26/604 (4%)

Query: 19  SIFNNNRNEGSFNNH---SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL----LIY 71
           + FN  R  G + NH   S++L +      +S+ +QIHA      L  +H  L    +  
Sbjct: 186 TFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHA------LIHKHCFLNDPFVAT 239

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           + +  +A    +  A  VF ++ + N  +WN++I    ++     +AI +F+ ++  G  
Sbjct: 240 ALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN-KLYGRAIGVFREVLSLG-- 296

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD+ +    L ACA L     GKQ H  I KRGLV  VY+ NSL+  Y  CG  + A K
Sbjct: 297 -PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATK 355

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           +F    +R +V+WNVMI    +   F+ A   F+ M +   EPD  ++ S+  A A +A 
Sbjct: 356 LFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAA 415

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L+ G   H+++L+   H  V +  +++SL+ MY KCGS+  A QVF    + ++  W ++
Sbjct: 416 LTQGTMIHSHVLK-TGH--VKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAM 472

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I  F  HG A  A+K F+ ++  E   P  ITFV VLSAC+H G + +G  YF+ M N +
Sbjct: 473 ITVFHQHGCANEAIKLFEEML-NEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVH 531

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
           NI P LEHY C+VDLL R G ++EA   + +MP +PD+++W +LL AC  KHA+V +  E
Sbjct: 532 NIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGAC-GKHANVEMGRE 590

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
           VA+++ + E     G Y+LLS +Y       +   VR+LM   GV KE GCS I++    
Sbjct: 591 VAERLFKLEPD-NPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRT 649

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
             F A D SH +T++IYG L  + E +K RGY  +   A   + ++  ++ SL  HSE+L
Sbjct: 650 FVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFAT--NSVEGSEEQSLWCHSEKL 707

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A G+L L PG P+R+ KNLR C DCH V K  S IF  EIIVRD  RFH F +GSCSC
Sbjct: 708 ALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSC 767

Query: 611 MDYW 614
           MDYW
Sbjct: 768 MDYW 771



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 170/328 (51%), Gaps = 15/328 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIE 94
           LL++  + KS+    QIH+Q + T     H +L  I + ++ +A    + +   +F    
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTT---NNHASLANINTLLLLYAKCGSIHHTLLLFNTYP 159

Query: 95  NP--NSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +P  N  TW TLI   +RS   KP QA+  F RM   G + P+  TF   L ACA+    
Sbjct: 160 HPSTNVVTWTTLINQLSRS--NKPFQALTFFNRMRTTG-IYPNHFTFSAILPACAHAALL 216

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           S+G+Q HA I K   ++D ++  +L+  YA CG + LA  VFD M  R+LVSWN MI  F
Sbjct: 217 SEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGF 276

Query: 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           V+   +  A+ +FR + +   PD  +  S+ SACAGL  L  G   H  I++     LV 
Sbjct: 277 VKNKLYGRAIGVFREV-LSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVK---RGLVG 332

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
            V V NSL+DMYCKCG  + A ++F     RD+ +WN +I+G       E A  YF  + 
Sbjct: 333 LVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAM- 391

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEG 359
           + E   P+  ++  +  A      +++G
Sbjct: 392 IREGVEPDEASYSSLFHASASIAALTQG 419


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 330/572 (57%), Gaps = 44/572 (7%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            A    LD A+ +       N  +W  LI   +R+  A  +A+  F  M+  G + PD+ 
Sbjct: 181 LAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAA-EAVDCFNSMLSDG-IEPDEV 238

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG------------ 184
           T    L ACA L     G+  H  + ++G++    +  +LI  YA CG            
Sbjct: 239 TVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDAL 298

Query: 185 --------------------HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                               H+D+A  +FD M +R LV++N +I  ++  G    AL LF
Sbjct: 299 GRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLF 358

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV-TDVLVNNSLIDM 282
            +M+      D +T  S+ +ACA L  L  G   HA I    +  LV  D+ +  +L+DM
Sbjct: 359 MQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACI----EQRLVEVDIYLGTALLDM 414

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y KCG ++ A  VF++M  RD+ +W+++I G A +G  +AAL+YF  + V+  F PNS+T
Sbjct: 415 YLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVD-GFQPNSVT 473

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           ++ +L+AC+H  ++ EGR YF+ M   +NI P++EHYGC++DLL R+G +DEA+ LV  M
Sbjct: 474 YIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTM 533

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
           PM+P+AVIW S+L AC + H    L+   A+ +++ E      VYV L  +Y  +R+W D
Sbjct: 534 PMQPNAVIWASILSAC-RVHKDANLARNAAEHLLKLEPDE-DAVYVQLYNIYIDSRQWED 591

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
              +R+LM ++GV K  G SSI + G  H+F   D +HPQ  +I   ++ I  +LKS GY
Sbjct: 592 ASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGY 651

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
           +P  SQ   VD  ++ K+ +L  HSE++AIA G+++L P +P+ + KNLRVC+DCH   K
Sbjct: 652 SPITSQIT-VDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIK 710

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LISRI+N EIIVRDR+RFHHF+DG+CSC D+W
Sbjct: 711 LISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 165/399 (41%), Gaps = 74/399 (18%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L YA  +F ++   ++F ++T +RAC R+       ++L++RM   G V  D  TF F  
Sbjct: 53  LRYALCLFDRMPC-STFLFDTALRACFRASSGPESPLILYRRMRRTG-VCTDAFTFHFLF 110

Query: 143 KACAYLFAFSQGKQA-HAHIFKRGLVSDV-YINNSLIHFYASCGHLDLANKVFDNMLERS 200
           K CA   A     Q  HA  F+  L S V  ++N +IH Y   G    A + FD++  + 
Sbjct: 111 KCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKD 170

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRR--------------------------------MQ 228
            V+W  +I    + G  D A  L R                                 + 
Sbjct: 171 AVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLS 230

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN------------ 276
              EPD  T   + SACA L  L  G   H  +       L++  LV             
Sbjct: 231 DGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGE--KGMLMSGKLVVALIDMYAKCGDI 288

Query: 277 -------------------NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
                              N++ID YCK G +D+AR +F+ M  RDL ++NS+I G+   
Sbjct: 289 GRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHG 348

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           GR   AL  F ++        ++ T V +L+AC   G + +GR     +  E  +  V  
Sbjct: 349 GRLREALLLFMQM-RRHDLRADNFTMVSLLTACASLGALPQGRALHACI--EQRLVEVDI 405

Query: 378 HYG-CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G  L+D+  + G ++EA  +   M ++ D   W +++
Sbjct: 406 YLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMI 443



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 13/292 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +L+    +C  + +  ++     R   PQ    +     I  +     +D A  +F Q+E
Sbjct: 277 ALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAM-----IDGYCKLGHVDVARYLFDQME 331

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + +  T+N+LI         + +A++LF +M  + ++  D  T    L ACA L A  QG
Sbjct: 332 DRDLVTFNSLITGYIHGGRLR-EALLLFMQM-RRHDLRADNFTMVSLLTACASLGALPQG 389

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  HA I +R +  D+Y+  +L+  Y  CG ++ A+ VF  M  R + +W+ MI      
Sbjct: 390 RALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFN 449

Query: 215 GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG-MWAHAYILRHCDHSLVTD 272
           G   +AL+ F  M++  F+P+  T+ +I +AC+    L  G ++     L H    L+  
Sbjct: 450 GMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEH 509

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAEAA 323
                 +ID+  + G LD A  +  +MP + +   W SI+    +H  A  A
Sbjct: 510 Y---GCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLA 558



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 43/307 (14%)

Query: 153 QGKQAHAHIFKRGLV----SDVYINNSLIHFYASCG--HLDLANKVFDNMLERSLVSWNV 206
           Q  + HA +   G +    S  ++ NSL++ +      HL  A  +FD M   + +    
Sbjct: 14  QAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTA 73

Query: 207 MIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACA-GLATLSLGMWAHAYILRH 264
           +   F      +S L L+RRM+      D +TF  +   CA G A + L    HA   R 
Sbjct: 74  LRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRT 133

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM------------------------- 299
              S V   LV+N +I MY + G    AR+ F+ +                         
Sbjct: 134 MLPSAVP--LVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAW 191

Query: 300 ------PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
                 P R++ SW  +I G++  GRA  A+  F+ + + +   P+ +T +G+LSAC   
Sbjct: 192 CLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSM-LSDGIEPDEVTVIGLLSACAQL 250

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
             +  GR     ++ E  +    +    L+D+ A+ G+I  A  +   +        W +
Sbjct: 251 KDLVFGRSLHK-LVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNA 309

Query: 414 LLDACCK 420
           ++D  CK
Sbjct: 310 MIDGYCK 316


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 344/586 (58%), Gaps = 21/586 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHK---TLL-IYSRIIHFASFADLDYAFRVF 90
           S+ +   + + +S  + +H+  ++    ++ +   TLL +YS+        DLD A  VF
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC------GDLDSAKAVF 354

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++ + +  ++ ++I   AR   A  +A+ LF+ M E+G + PD +T    L  CA    
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLA-GEAVKLFEEMEEEG-ISPDVYTVTAVLNCCARYRL 412

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             +GK+ H  I +  L  D++++N+L+  YA CG +  A  VF  M  + ++SWN +I  
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472

Query: 211 FVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           + +    + AL LF  +  +  F PD  T   +  ACA L+    G   H YI+R+    
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN---G 529

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
             +D  V NSL+DMY KCG+L +A  +F+ +  +DL SW  +I G+ +HG  + A+  F+
Sbjct: 530 YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFN 589

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           ++  +     + I+FV +L AC+H G+V EG  +F++M +E  I P +EHY C+VD+LAR
Sbjct: 590 QMR-QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            G++ +A   + NMP+ PDA IW +LL   C+ H  V L+E+VA++V E E    +G YV
Sbjct: 649 TGDLIKAYRFIENMPIPPDATIWGALL-CGCRIHHDVKLAEKVAEKVFELEPE-NTGYYV 706

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           L++ +YA A +W  V  +RK +  +G+ K PGCS IEI G  + F AGD+S+P+T+ I  
Sbjct: 707 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 766

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           FL  +  ++   GY+P  ++ A++D  +  K+ +L  HSE+LA+ALGI++   G  IRV 
Sbjct: 767 FLRKVRARMIEEGYSP-LTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 825

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCHE+ K +S++   EI++RD  RFH FKDG CSC  +W
Sbjct: 826 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 178/342 (52%), Gaps = 9/342 (2%)

Query: 75  IHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           + + +  DL  A RVF +++   +  WN L+   A+S D    +I LF++M+  G V  D
Sbjct: 137 LMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSG-SIGLFKKMMSSG-VEMD 194

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            +TF    K+ + L +   G+Q H  I K G      + NSL+ FY     +D A KVFD
Sbjct: 195 SYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD 254

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253
            M ER ++SWN +I+ +V  G  +  L +F +M +   E D  T  S+ + CA    +SL
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL 314

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   H+  ++ C      +    N+L+DMY KCG LD A+ VF  M  R + S+ S+I G
Sbjct: 315 GRAVHSIGVKAC---FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A  G A  A+K F+ +  EE  SP+  T   VL+ C    ++ EG+   +  I E ++ 
Sbjct: 372 YAREGLAGEAVKLFEEM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE-WIKENDLG 429

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +     L+D+ A+ G++ EA  + S M +K D + W +++
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 153/327 (46%), Gaps = 12/327 (3%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  T    L+ CA   +   GK+    I   G V D  + + L   Y +CG L  A++VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D +     + WN++++   + G+F  ++ LF++M     E D YTF  ++ + + L ++ 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H +IL+           V NSL+  Y K   +D AR+VF+ M +RD+ SWNSII 
Sbjct: 213 GGEQLHGFILK---SGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 269

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+  +G AE  L  F +++V      +  T V V + C    ++S GR    + +     
Sbjct: 270 GYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC-F 327

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           +        L+D+ ++ G++D A  +   M  +   V + S++      +A   L+ E  
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS-VVSYTSMIAG----YAREGLAGEAV 382

Query: 433 KQVIE-SEGGICSGVYVLLSRVYASAR 458
           K   E  E GI   VY + + +   AR
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCAR 409


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 344/586 (58%), Gaps = 21/586 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHK---TLL-IYSRIIHFASFADLDYAFRVF 90
           S+ +   + + +S  + +H+  ++    ++ +   TLL +YS+        DLD A  VF
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC------GDLDSAKAVF 203

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++ + +  ++ ++I   AR   A  +A+ LF+ M E+G + PD +T    L  CA    
Sbjct: 204 REMSDRSVVSYTSMIAGYAREGLA-GEAVKLFEEMEEEG-ISPDVYTVTAVLNCCARYRL 261

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             +GK+ H  I +  L  D++++N+L+  YA CG +  A  VF  M  + ++SWN +I  
Sbjct: 262 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 321

Query: 211 FVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           + +    + AL LF  +  +  F PD  T   +  ACA L+    G   H YI+R+    
Sbjct: 322 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN---G 378

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
             +D  V NSL+DMY KCG+L +A  +F+ +  +DL SW  +I G+ +HG  + A+  F+
Sbjct: 379 YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFN 438

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           ++  +     + I+FV +L AC+H G+V EG  +F++M +E  I P +EHY C+VD+LAR
Sbjct: 439 QMR-QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 497

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            G++ +A   + NMP+ PDA IW +LL   C+ H  V L+E+VA++V E E    +G YV
Sbjct: 498 TGDLIKAYRFIENMPIPPDATIWGALL-CGCRIHHDVKLAEKVAEKVFELEPE-NTGYYV 555

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           L++ +YA A +W  V  +RK +  +G+ K PGCS IEI G  + F AGD+S+P+T+ I  
Sbjct: 556 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 615

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           FL  +  ++   GY+P  ++ A++D  +  K+ +L  HSE+LA+ALGI++   G  IRV 
Sbjct: 616 FLRKVRARMIEEGYSP-LTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 674

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCHE+ K +S++   EI++RD  RFH FKDG CSC  +W
Sbjct: 675 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 171/332 (51%), Gaps = 9/332 (2%)

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F +++   +  WN L+   A+S D    +I LF++M+  G V  D +TF    K+ + L 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSG-SIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLR 58

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           +   G+Q H  I K G      + NSL+ FY     +D A KVFD M ER ++SWN +I+
Sbjct: 59  SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 118

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            +V  G  +  L +F +M +   E D  T  S+ + CA    +SLG   H+  ++ C   
Sbjct: 119 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC--- 175

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
              +    N+L+DMY KCG LD A+ VF  M  R + S+ S+I G+A  G A  A+K F+
Sbjct: 176 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 235

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +  EE  SP+  T   VL+ C    ++ EG+   +  I E ++   +     L+D+ A+
Sbjct: 236 EM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAK 293

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            G++ EA  + S M +K D + W +++    K
Sbjct: 294 CGSMQEAELVFSEMRVK-DIISWNTIIGGYSK 324



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 188/384 (48%), Gaps = 12/384 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S +  S +  +S+   +Q+H   L++   +++   +  S +  +     +D A +VF ++
Sbjct: 48  SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS--VGNSLVAFYLKNQRVDSARKVFDEM 105

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +  +WN++I     +  A+ + + +F +M+  G +  D  T       CA     S 
Sbjct: 106 TERDVISWNSIINGYVSNGLAE-KGLSVFVQMLVSG-IEIDLATIVSVFAGCADSRLISL 163

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+  H+   K     +    N+L+  Y+ CG LD A  VF  M +RS+VS+  MI  + +
Sbjct: 164 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 223

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    A+KLF  M+     PD YT  ++ + CA    L  G   H +I    ++ L  D
Sbjct: 224 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK---ENDLGFD 280

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + V+N+L+DMY KCGS+  A  VF  M  +D+ SWN+II G++ +  A  AL  F+ L+ 
Sbjct: 281 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE 340

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLARAGN 391
           E+ FSP+  T   VL AC       +GR+    +M N Y     + +   LVD+ A+ G 
Sbjct: 341 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGA 398

Query: 392 IDEALHLVSNMPMKPDAVIWRSLL 415
           +  A  L  ++  K D V W  ++
Sbjct: 399 LLLAHMLFDDIASK-DLVSWTVMI 421


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/590 (37%), Positives = 335/590 (56%), Gaps = 18/590 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA-FR 88
           + N  + L SLT  +S+ +  Q+HA  ++  L       L+   +I+F S   L Y+  +
Sbjct: 20  YRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGL---QTIPLLSHHLINFYSKTHLPYSSLQ 76

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F+   + ++ TW+++I + A++ D    ++  F+ M+ QG V PD H FP A K+C  L
Sbjct: 77  IFHDSPHKSATTWSSVISSFAQN-DLPLLSLNYFRLMLRQG-VPPDDHIFPSATKSCGIL 134

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +    K  H    K     D+++ +S+I  YA CG +  A+ VFD M  R++VSW+ +I
Sbjct: 135 SSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLI 194

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDG---YTFQSITSACAGLATLSLGMWAHAYILRHC 265
             +VQ GE D +L+LF+R  +  E +G   +T  S+   C G   L +G   H    +  
Sbjct: 195 YGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKT- 253

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
             S  +   V +SLI +Y KCG ++ A  VFE +  R+L  WN++++  A H   +   +
Sbjct: 254 --SFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFE 311

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            FD++        N ITF+ VL AC+H G+V +G+ YF++M  +Y I P  +HY  +VDL
Sbjct: 312 LFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDL 370

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG +++A+ L+  MPM+P   +W +LL  C + H +  L+  VA +V E  G + SG
Sbjct: 371 LGRAGKLNDAVKLIEEMPMEPTESVWGALLTGC-RLHGNTKLASYVADRVSEL-GSVSSG 428

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
           ++V+LS  YA+A RW +    RK+M D+G+ KE G S +E     H F AGD SH ++ +
Sbjct: 429 LHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVE 488

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGMP 564
           IY  LD + E++   GY  D S   ++ E+D + K  S+R HSERLAIA G +    G P
Sbjct: 489 IYDKLDELGEEMDKAGYVADTS--FVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQP 546

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCH   K IS+     IIVRD  RFH F+DG C+C DYW
Sbjct: 547 IRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 314/544 (57%), Gaps = 17/544 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           +R +   S    D   ++F  +   +  +WNT+I   AR  +   +  +   R +   N+
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNAR--NGLYEETLRMIREMGGANL 235

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD  T    L   A     S+GK+ H    ++GL +D+Y+ +SLI  YA C  +  + +
Sbjct: 236 KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR 295

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           VF  + ER  +SWN +I   VQ G FD  L+ FR+M +   +P  Y+F SI  ACA L T
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H YI R+       ++ + +SL+DMY KCG++  A+Q+F+ M  RD+ SW ++
Sbjct: 356 LHLGKQLHGYITRN---GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAM 412

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G ALHG+A  A++ F+++  E            VL+AC+H G+V E   YF+ M  ++
Sbjct: 413 IMGCALHGQAPDAIELFEQMETE--------GIKAVLTACSHGGLVDEAWKYFNSMTRDF 464

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I P +EHY  + DLL RAG ++EA   +  M + P   IW +LL AC + H ++ ++E+
Sbjct: 465 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSAC-RVHKNIDMAEK 523

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
           VA +++E +    +G Y+LL+ +Y++ARRW +    R  M   G+ K P CS IE+    
Sbjct: 524 VANRILEVDPN-NTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKV 582

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           + F AGD SHP  ++I   ++++ E ++  GY PD S+    D  ++ K+  +  HSERL
Sbjct: 583 YAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHH-DVEEEQKKYLVCSHSERL 641

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AI  GI+N   GM IRV KNLRVC DCH  TK IS+I   EI+VRD +RFHHFK+G+CSC
Sbjct: 642 AIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSC 701

Query: 611 MDYW 614
            DYW
Sbjct: 702 GDYW 705



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 205/442 (46%), Gaps = 52/442 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALR---TALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +LL +    KS SQ +Q+HAQ L+   ++L      L IYS I        L  + R+F 
Sbjct: 11  ALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHI------NLLHDSLRLFN 64

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            I  P +  W ++IR C  S     Q++  F  M+  G + PD + FP  LK+CA L   
Sbjct: 65  TIHFPPALAWKSVIR-CYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSVLKSCALLMDL 122

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL-------ANKVFDNMLERS---- 200
           + G+  H +I + GL  D+Y  N+L++ Y+    L+        A +VFD M ER+    
Sbjct: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182

Query: 201 ---------------------LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
                                LVSWN +I    + G ++  L++ R M     +PD +T 
Sbjct: 183 TVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTL 242

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+    A    +S G   H   +R     L  D+ V +SLIDMY KC  +  + +VF  
Sbjct: 243 SSVLPLIAENVDISRGKEIHGCSIR---QGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           + +RD  SWNSII G   +G  +  L++F ++++ +   P S +F  ++ AC H   +  
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHL 358

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G+      I        +     LVD+ A+ GNI  A  +   M ++ D V W +++  C
Sbjct: 359 GKQLHGY-ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGC 416

Query: 419 CKKHASVVLSEEVAKQVIESEG 440
              H     + E+ +Q +E+EG
Sbjct: 417 A-LHGQAPDAIELFEQ-METEG 436


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 340/576 (59%), Gaps = 16/576 (2%)

Query: 36  LLSSLTECKSMS--QLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +LS L    S    QLK+IHA  +RT   +  K  L+   + +     D+ YA +VF ++
Sbjct: 12  MLSELLRASSSKPKQLKKIHAVVIRTGFSE--KNSLLTQLLENLVLVGDMCYARQVFDEM 69

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             P  F WNTL +   R+     ++++L+++M + G V PD+ T+PF +KA + L     
Sbjct: 70  PKPRIFLWNTLFKGYVRN-QLPFESVLLYKKMRDLG-VRPDEFTYPFVVKAISQLGVLPC 127

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G   HAH+ K G      +   L+  Y   G L  A  +F++M  + LV+WN  I   VQ
Sbjct: 128 GVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQ 187

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    AL+ F +M     + D +T  S+ SAC  L +L +G   +    R     +  +
Sbjct: 188 TGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYD---RARKEEIECN 244

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           ++V N+ +DM+ KCGS + AR +F+ M +R++ SW+++I+G+A++G +  AL  F  ++ 
Sbjct: 245 IIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFT-MMQ 303

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLARAG 390
            E   PN +TF+GVLSAC+H G+V+EG+ YF +M+  N+ N+ P  EHY C+VDLL R+G
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSG 363

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++EA   +  M ++PD  IW +LL AC   H  ++L ++VA  ++E+   I S  +VLL
Sbjct: 364 LLEEAYEFIKKMRVEPDTGIWGALLGACAV-HRDMILGQKVADVLVETAPDIGS-YHVLL 421

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA+A +W+ V  VR  M   G  K    SS+E DG  H F  GD SHPQ+K IY  L
Sbjct: 422 SNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKL 481

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           D I +K+++ GY PD        E+++ K+SSL  HSE+LAIA G++N + G PIRV KN
Sbjct: 482 DEILKKIRNMGYVPDTGSVFHDVEMEE-KESSLSHHSEKLAIAFGLINGRAGHPIRVMKN 540

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           LR C DCH  +K +SR+ + EII+RD+ RFHHF++G
Sbjct: 541 LRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 337/582 (57%), Gaps = 14/582 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +SLLS+  E +  S  KQ+H+  +R+ L       +  + +  +A  A ++ + ++F  +
Sbjct: 252 TSLLSACVELEFFSLGKQLHSWVIRSGLASD--VFVGCTLVDMYAKSAAVENSRKIFNTM 309

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + N  +W  LI    +S   + +AI LF  M+  G+V P+  TF   LKACA L  F  
Sbjct: 310 LHHNVMSWTALISGYVQS-RQEQEAIKLFCNML-HGHVTPNCFTFSSVLKACASLPDFGI 367

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GKQ H    K GL +   + NSLI+ YA  G ++ A K F+ + E++L+S+N   DA  +
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK 427

Query: 214 FGEFDSALK-LFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             + D +         +   P  +T+  + S  A + T+  G   HA I++       T+
Sbjct: 428 ALDSDESFNHEVEHTGVGASP--FTYACLLSGAACIGTIVKGEQIHALIVKS---GFGTN 482

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + +NN+LI MY KCG+ + A QVF  M  R++ +W SII GFA HG A  AL+ F  ++ 
Sbjct: 483 LCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEML- 541

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           E    PN +T++ VLSAC+H G++ E   +F+ M   ++I+P +EHY C+VDLL R+G +
Sbjct: 542 EIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLL 601

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
            EA+  +++MP   DA++WR+ L +C + H +  L E  AK+++E E       Y+LLS 
Sbjct: 602 LEAIEFINSMPFDADALVWRTFLGSC-RVHRNTKLGEHAAKKILEREPHD-PATYILLSN 659

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YAS  RW+DV  +RK M  K + KE G S IE+D   H+F  GDTSHPQ ++IY  LD 
Sbjct: 660 LYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDE 719

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           +  K+K+ GY P+ +   + D  D+ K+  L  HSE++A+A  +++     PIRVFKNLR
Sbjct: 720 LALKIKNLGYIPN-TDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLR 778

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   K IS +   EI+VRD  RFHH KDG CSC DYW
Sbjct: 779 VCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 176/357 (49%), Gaps = 12/357 (3%)

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           D+  A  VF ++++ N  TW  +I   ++ +     A+ LF R++      PDK T    
Sbjct: 197 DIQSARMVFDKMQHKNLVTWTLMITRYSQ-LGLLDDAVDLFCRLL-VSEYTPDKFTLTSL 254

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L AC  L  FS GKQ H+ + + GL SDV++  +L+  YA    ++ + K+F+ ML  ++
Sbjct: 255 LSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           +SW  +I  +VQ  +   A+KLF  M      P+ +TF S+  ACA L    +G   H  
Sbjct: 315 MSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQ 374

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
            ++     L T   V NSLI+MY + G+++ AR+ F  + +++L S+N+       + +A
Sbjct: 375 TIK---LGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNT---AADANAKA 428

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             + + F+  V       +  T+  +LS     G + +G +    +I +      L    
Sbjct: 429 LDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKG-EQIHALIVKSGFGTNLCINN 487

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
            L+ + ++ GN + AL + ++M  + + + W S++     KH     + E+  +++E
Sbjct: 488 ALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISG-FAKHGFATKALELFYEMLE 542



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LER 199
           LKAC        GK  H  +   GL  D  + NSLI  Y+ CG  + A  +F NM   +R
Sbjct: 46  LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM----QILFEPDGYTFQSITSACAGLATLSLGM 255
            LVSW+ +I  F        AL  F  M    + +  P+ Y F ++  +C+     + G+
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGL 165

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI--ARQVFESMPKRDLTSWNSIILG 313
              A++L+       + V V  +LIDM+ K G LDI  AR VF+ M  ++L +W  +I  
Sbjct: 166 AIFAFLLK--TGYFDSHVCVGCALIDMFTK-GGLDIQSARMVFDKMQHKNLVTWTLMITR 222

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           ++  G  + A+  F RL+V E ++P+  T   +LSAC      S G+     +I     +
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSE-YTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLAS 281

Query: 374 PVLEHYGC-LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            V    GC LVD+ A++  ++ +  + + M +  + + W +L+  
Sbjct: 282 DVF--VGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISG 323


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/598 (37%), Positives = 330/598 (55%), Gaps = 43/598 (7%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K++H   ++T + Q     L  + I  +     +  A  +F Q+ + +  +W +++ A  
Sbjct: 23  KKLHCHIIKTGIDQCKS--LSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANN 80

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ +     + +F  M +Q  + PD + F   +KACA L A  QGKQ HA      +  D
Sbjct: 81  QA-NLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDD 139

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
             + +SL+  YA CG  D+   VFD++  ++ +SW  MI  + Q G    A++LF++M +
Sbjct: 140 DVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPV 199

Query: 230 ------------------------LFEP---------DGYTFQSITSACAGLATLSLGMW 256
                                   LF           D +   SI  A A LA L LG  
Sbjct: 200 KNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQ 259

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H  ++     S    + V+N+L+DMY KC  +  A+++F  M +RD+ SW SII+G A 
Sbjct: 260 IHCLVILLGYES---SLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQ 316

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HG AE AL  ++R++      PN +TFVG++ AC+H G+VS+GR +F+ MI +Y I P L
Sbjct: 317 HGLAEEALSLYNRML-STGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSL 375

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           +HY CL+DLL+R+G+++EA +L+  MP KPD   W +LL A C  H + ++   VA  ++
Sbjct: 376 QHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSA-CNHHRNTLIGIRVADHLL 434

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
             +    S  Y+LLS +YASA  W  V  VR+LM    V KEPG S I +   +  F AG
Sbjct: 435 SLKPEDPS-TYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAG 493

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           +TSHP  ++I+G L+ +D ++K RGY PD S + + D     K+  L  HSERLA+A G+
Sbjct: 494 ETSHPAKEEIFGLLEELDAEMKKRGYIPDTS-SVLHDLEQQEKERQLFWHSERLAVAYGL 552

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L   PGM + + KNLRVC DCH V K IS I   EI+VRD  R+HHFKDG CSC ++W
Sbjct: 553 LKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 21/241 (8%)

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           + L+ACA   +   GK+ H HI K G+     ++N+LI+ Y  CG +  A  +F+ +  R
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWA 257
             +SW  ++ A  Q       L +F  M  Q   +PD Y F  +  ACA L  +  G   
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQV 127

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HA  +      +  D +V +SL+DMY KCG  DI R VF+S+  ++  SW ++I G+A  
Sbjct: 128 HATFIV---SPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQS 184

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG-----------MVSEGRDYFDVM 366
           GR   A++ F ++ V+     N +++  ++S     G           M S+G D  D  
Sbjct: 185 GRKLDAIQLFQKMPVK-----NLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPF 239

Query: 367 I 367
           I
Sbjct: 240 I 240


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 331/561 (59%), Gaps = 11/561 (1%)

Query: 56  ALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
           A R  L    K +  ++ ++H +     ++   R+F ++   +  +W ++I     +  +
Sbjct: 124 AQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKS 183

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
           + +A+ +F++M+  G V P   TF   L ACA    F+ G Q H H+ K G     +I+ 
Sbjct: 184 E-EALFVFKKMLRSG-VEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISV 241

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-P 233
           SLI FYA+C  ++ A+K+F+  L +++V W  ++ A+V   +   AL++F  M  +   P
Sbjct: 242 SLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALP 301

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  TF     AC GL  L  G   H   ++     L TDV V NSL+ MY +CG+++ A 
Sbjct: 302 NQSTFSITLKACCGLEALDKGKEIHTMAIKL---GLETDVFVGNSLVVMYTECGNVNSAV 358

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            VF ++ ++D+ SWNSII+G A HG    AL +F++++      PN ITF G+LSAC+  
Sbjct: 359 AVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMI-RRGVDPNEITFTGLLSACSRS 417

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           GM+ +GR +F+ +    +     +HY C+VD+L R G +DEA  LV  MP+K +++IW +
Sbjct: 418 GMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLA 477

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL AC + H+++ ++E  AK +++ E   CS  YVLLS +YASA RW DV  +R  M   
Sbjct: 478 LLSAC-RVHSNLEVAERAAKHILDLEPN-CSSAYVLLSNIYASAGRWADVSRMRVKMKQG 535

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           G+ K+PG S + + G  HEF + D SHP +++IY  LD + +KLK  GY PD  + A+ D
Sbjct: 536 GLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPD-QKFALHD 594

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             D+ K+  L  HSERLAIA G+++   G  I V KNLRVC DCH V KL+S+I   +I+
Sbjct: 595 VEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIV 654

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           VRD  RFHHFK+G CSC DYW
Sbjct: 655 VRDSGRFHHFKNGICSCSDYW 675



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 42/190 (22%)

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           +F R  V DV   NS+I     CG+L +A ++FD M E++++SW  M++ +++FG  + A
Sbjct: 65  LFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELA 124

Query: 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
            +LF  M                                          V DV   N+++
Sbjct: 125 QRLFLDMH-----------------------------------------VKDVAAWNAMV 143

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
             Y + G ++   ++FE MP RD+ SW S+I G  L+G++E AL  F ++ +     P  
Sbjct: 144 HGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKM-LRSGVEPTW 202

Query: 341 ITFVGVLSAC 350
            TF  VLSAC
Sbjct: 203 STFACVLSAC 212



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 139/336 (41%), Gaps = 48/336 (14%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            +L  A R+F ++   N  +W T++    +           F R+     +  D H    
Sbjct: 88  GNLGMATRLFDEMPEKNVISWTTMVNGYLK-----------FGRVELAQRLFLDMH---- 132

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
                                     V DV   N+++H Y   G ++   ++F+ M  R 
Sbjct: 133 --------------------------VKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRD 166

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           ++SW  MI      G+ + AL +F++M +   EP   TF  + SACA     +LG+  H 
Sbjct: 167 VISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHG 226

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           ++++           ++ SLI  Y  C  ++ A ++F     +++  W +++  +  + +
Sbjct: 227 HVVK---LGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNK 283

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            + AL+ F  +    +  PN  TF   L AC     + +G++   + I     T V    
Sbjct: 284 HQDALRVFGDMTKMGAL-PNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVG- 341

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             LV +    GN++ A+ +  N+  K D V W S++
Sbjct: 342 NSLVVMYTECGNVNSAVAVFRNINEK-DIVSWNSII 376



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+  D   V DV+  NS+I     CG+L +A ++F+ MP++++ SW +++ G+   GR E
Sbjct: 63  LKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVE 122

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE--HY 379
            A + F  + V++  + N++     +      G V EG   F+ M       PV +   +
Sbjct: 123 LAQRLFLDMHVKDVAAWNAM-----VHGYFENGRVEEGVRLFEEM-------PVRDVISW 170

Query: 380 GCLVDLLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDAC 418
             ++  L   G  +EAL +   M    ++P    +  +L AC
Sbjct: 171 TSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSAC 212



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           LD AR +F+ +P  +L  +  +I G+  + R   ALK FDR+ V +  S NS+   G L 
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSM-IKGCLD 86

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
            C + GM +     FD M  +  I+     +  +V+   + G ++ A  L  +M +K D 
Sbjct: 87  -CGNLGMATR---LFDEMPEKNVIS-----WTTMVNGYLKFGRVELAQRLFLDMHVK-DV 136

Query: 409 VIWRSLL 415
             W +++
Sbjct: 137 AAWNAMV 143



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           +I  Y +   L  A ++F+ M  RD+ SWNS+I G    G    A + FD     E    
Sbjct: 49  MIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFD-----EMPEK 103

Query: 339 NSITFVGVLSACNHRGMVSEG-RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           N I++  +++     G V    R + D+ + +      +  +  +V      G ++E + 
Sbjct: 104 NVISWTTMVNGYLKFGRVELAQRLFLDMHVKD------VAAWNAMVHGYFENGRVEEGVR 157

Query: 398 LVSNMPMKPDAVIWRSLL 415
           L   MP++ D + W S++
Sbjct: 158 LFEEMPVR-DVISWTSMI 174


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/539 (38%), Positives = 318/539 (58%), Gaps = 10/539 (1%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL+ A ++F ++   N  TWN +I A     +   QA+ LF+ M   G  LPD+ 
Sbjct: 138 YLQLGDLESAQKLFDEMSERNIATWNAMI-AGLTQFEFNKQALSLFKEMYGLG-FLPDEF 195

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L+ CA L +   G++ HA + K G      + +SL H Y   G L    K+  +M
Sbjct: 196 TLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSM 255

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             R++V+WN +I    Q G  +  L  +  M++  F PD  TF S+ SAC+ LATL  G 
Sbjct: 256 PIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQ 315

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA +++    S++    V +SLI MY + G L+ + + F      D+  W+S+I  + 
Sbjct: 316 QIHAEVIKAGASSVLA---VVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYG 372

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HGR E AL+ F ++  +     N +TF+ +L AC+H G+  +G +YFD+M+ +Y + P 
Sbjct: 373 FHGRGEEALELFHQME-DLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPR 431

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHY C+VDLL RAG ++EA  ++ +MP++PD +IW++LL A CK H    ++E +++++
Sbjct: 432 IEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLL-AACKLHKEAEMAERISEEI 490

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           I+ +  + +  YVLLS ++ASAR W +V  +RK M D+ V KEPG S +E+  + H+F  
Sbjct: 491 IKLDP-LDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSM 549

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SHPQ  +I  +L  +  +LK  GY P+   + + D  ++ K+ +L  HSE+ AIA  
Sbjct: 550 GDKSHPQYFEIDLYLKELMSELKQHGYVPELG-SVLHDMDNEEKEYNLAHHSEKFAIAFA 608

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++N    +PIRV KNLRVC DCH   K ISRI N EIIVRD +RFHHFKDG CSC +YW
Sbjct: 609 LMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 155/319 (48%), Gaps = 38/319 (11%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH----- 185
           +  D   F   L++C  L +   GKQ H+ I   G   D +I+N L++FY+  G      
Sbjct: 58  IWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSL 117

Query: 186 --------------------------LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
                                     L+ A K+FD M ER++ +WN MI    QF     
Sbjct: 118 VLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQ 177

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL LF+ M  L F PD +T  S+   CAGL +L  G   HA +L+ C   L +  +V +S
Sbjct: 178 ALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLK-CGFELSS--VVGSS 234

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L  MY K GSL    ++ +SMP R + +WN++I G A +G  E  L  ++ + +   F P
Sbjct: 235 LAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKM-AGFRP 293

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + ITFV VLSAC+    + +G+     +I +   + VL     L+ + +R+G +++++  
Sbjct: 294 DKITFVSVLSACSELATLGQGQQIHAEVI-KAGASSVLAVVSSLISMYSRSGCLEDSIKA 352

Query: 399 VSNMPMKPDAVIWRSLLDA 417
             +     D V+W S++ A
Sbjct: 353 FVDRE-NFDVVLWSSMIAA 370


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/583 (37%), Positives = 331/583 (56%), Gaps = 15/583 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS L + T    +SQ ++I A+ + +       +++  + I  ++    L+ A +VF ++
Sbjct: 167 SSALYACTVVGDISQGREIEARTVASGYASD--SIVQNALINMYSKCGSLESARKVFDRL 224

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +N +   WNT+I   A+   A  QA+ LFQRM    +  P+  TF   L AC  L    Q
Sbjct: 225 KNRDVIAWNTMISGYAKQ-GAATQALELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQ 282

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGH-LDLANKVFDNMLERSLVSWNVMIDAFV 212
           G+  H  + + G  SD+ I N L++ Y  C   L+ A +VF+ M  R +++WN++I A+V
Sbjct: 283 GRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYV 342

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q+G+   AL +F++MQ+    P+  T  ++ SACA L     G   HA I          
Sbjct: 343 QYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALI---ASGRCKA 399

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV++ NSL++MY +CGSLD    VF ++  + L SW+++I  +A HG +   L++F  L+
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +E  + + +T V  LSAC+H GM+ EG   F  M+ ++ + P   H+ C+VDLL+RAG 
Sbjct: 460 -QEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGR 518

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++ A +L+ +MP  PDAV W SLL  C K H     +  VA ++ E E         LLS
Sbjct: 519 LEAAENLIHDMPFLPDAVAWTSLLSGC-KLHNDTKRAARVADKLFELESEDEHSTVTLLS 577

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            VYA A RW+DV   RK    +   K PGCS IEI+   HEF AGD SHP+ + I   + 
Sbjct: 578 NVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIK 634

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + +++K  GY PD  +  + +  ++ K+  L  HSE+LAIA G+++  PG P+ + KNL
Sbjct: 635 RLSKQMKDAGYVPDM-RMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNL 693

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R C DCH   K ISRI   +I+VRD  RFHHF++GSCSC DYW
Sbjct: 694 RACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 210/399 (52%), Gaps = 17/399 (4%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           EG   + +  + ++  C S   LKQ   +HA  L T L  +   +L  + I  +A   DL
Sbjct: 52  EGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRL-LEFDIILGTALITMYARCRDL 110

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--NVLPDKHTFPFA 141
           + A + F ++      TWN LI   +R+ D +  A+ ++Q M+ +    + PD  TF  A
Sbjct: 111 ELARKTFDEMGKKTLVTWNALIAGYSRNGDHRG-ALKIYQDMVSKSPEGMKPDAITFSSA 169

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L AC  +   SQG++  A     G  SD  + N+LI+ Y+ CG L+ A KVFD +  R +
Sbjct: 170 LYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAY 260
           ++WN MI  + + G    AL+LF+RM     +P+  TF  + +AC  L  L  G   H  
Sbjct: 230 IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRK 289

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           +    +    +D+++ N L++MY KC  SL+ ARQVFE M  RD+ +WN +I+ +  +G+
Sbjct: 290 VR---EDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQ 346

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITPVLEH 378
           A+ AL  F ++ + E+ +PN IT   VLSAC   G   +G+    ++ +       VLE+
Sbjct: 347 AKDALDIFKQMQL-ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              L+++  R G++D+ + + + +  K   V W +L+ A
Sbjct: 406 --SLMNMYNRCGSLDDTVGVFAAIRDKS-LVSWSTLIAA 441



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 160/280 (57%), Gaps = 11/280 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF+ IE+PNS +W  ++ A AR+   + +A+  ++RM+ +G + PD   F  A+  C
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYR-EALGYYRRMVLEG-LRPDGAMFVVAIGVC 68

Query: 146 AYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           +      QG+  HA I +  L+  D+ +  +LI  YA C  L+LA K FD M +++LV+W
Sbjct: 69  SSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTW 128

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL----FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           N +I  + + G+   ALK+++ M        +PD  TF S   AC  +  +S G    A 
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEA- 187

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
             R       +D +V N+LI+MY KCGSL+ AR+VF+ +  RD+ +WN++I G+A  G A
Sbjct: 188 --RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
             AL+ F R+   +   PN +TF+G+L+AC +   + +GR
Sbjct: 246 TQALELFQRMGPNDP-KPNVVTFIGLLTACTNLEDLEQGR 284



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 129/251 (51%), Gaps = 9/251 (3%)

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYT 237
            Y  CG +  A  VF  +   + VSW +++ AF + G +  AL  +RRM +    PDG  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
           F      C+    L  G   HA IL      L  D+++  +LI MY +C  L++AR+ F+
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILE--TRLLEFDIILGTALITMYARCRDLELARKTFD 118

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE--ESFSPNSITFVGVLSACNHRGM 355
            M K+ L +WN++I G++ +G    ALK +  +V +  E   P++ITF   L AC   G 
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD 178

Query: 356 VSEGRDY-FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +S+GR+     + + Y    ++++   L+++ ++ G+++ A  +   +  + D + W ++
Sbjct: 179 ISQGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLKNR-DVIAWNTM 235

Query: 415 LDACCKKHASV 425
           +    K+ A+ 
Sbjct: 236 ISGYAKQGAAT 246


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/531 (41%), Positives = 305/531 (57%), Gaps = 41/531 (7%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+ LF  ++  G   PD   +  AL  CA   A+    Q H H  KRG  S   + N LI
Sbjct: 59  ALRLFDHLLRSG-ADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLI 117

Query: 178 HFYASCGHLDLANKVFDN-------------------------------MLERSLVSWNV 206
           H Y+ CG L  A KVFD+                               M  R  VSWN 
Sbjct: 118 HAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNT 177

Query: 207 MIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           +I   V  GE + A+ +FR M    E  PD  T  S+ SA A L  L+ G+WAHAY+   
Sbjct: 178 VIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYV--- 234

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE-SMPKRDLTSWNSIILGFALHGRAEAA 323
           C   +  D  ++++LI+MY KCG ++ A  VFE S   R + +WN+++ GF   G +E A
Sbjct: 235 CRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERA 294

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L+ F R+     F PN ITF  +L+AC+H G V EG  YF+ M N  +I P + HYGC+V
Sbjct: 295 LELFTRME-SSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMV 353

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DL  RAG  ++A  ++  MPM+PDA +W++L+ AC + +++  L ++   ++IE+     
Sbjct: 354 DLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGAC-RTYSNFELGKKAGHRLIEAAPNDH 412

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +G YVLLS +YA    W  V  VRKLM + GV K PG SSIE+DG+ HEF +GD SH + 
Sbjct: 413 AG-YVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRK 471

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           + +Y  L  I ++LK  GY PD SQ  +  + +D K+SSL LHSERLA+A G+++  PG 
Sbjct: 472 RDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGT 531

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIR+ KNLRVC DCH   KL+S+I+   I+VRD  RFH F++GSCSC DYW
Sbjct: 532 PIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 133/251 (52%), Gaps = 9/251 (3%)

Query: 86  AFRVFY-QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           A R F+ Q+   +S +WNT+I  C  + + + +A+ +F+ M+      PD+ T    + A
Sbjct: 159 ALREFFAQMPARDSVSWNTVIAWCVANGEHE-EAVAVFREMLASNECQPDRVTLVSVISA 217

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVS 203
            AYL A +QG  AHA++ ++ +  D  ++++LI+ Y+ CG ++ A  VF+N    RS+ +
Sbjct: 218 IAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDT 277

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN M+  F   G  + AL+LF RM+   F P+  TF ++ +AC+    +  G+    Y  
Sbjct: 278 WNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGI---GYFE 334

Query: 263 RHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRA 320
           R  + S +  D+     ++D++C+ G  + A ++ + MP + D   W +++     +   
Sbjct: 335 RMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNF 394

Query: 321 EAALKYFDRLV 331
           E   K   RL+
Sbjct: 395 ELGKKAGHRLI 405


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/648 (36%), Positives = 344/648 (53%), Gaps = 79/648 (12%)

Query: 32  NHSSLLSSLTECK---SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           NH   +  L  C    SM QL +I AQ + + +P     ++    I   +S  +L ++  
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79

Query: 89  VFYQ-IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACA 146
           +F   +  PN F +N L++A ++  +A    I  F   +   N   PD++TF   LKACA
Sbjct: 80  IFNHFLSFPNIFAYNALLKAFSQH-NAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138

Query: 147 YLFAFSQGKQAHAHIFKRG-------------------------------LVSDVYINNS 175
            L    +G++ H  + K G                               +V DV   N+
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNT 198

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI------ 229
           LI  Y   G +D A  VFD M+E++LVSW+ MI  + + G  + A +LF  M +      
Sbjct: 199 LISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSW 258

Query: 230 ------------------LFE---------PDGYTFQSITSACAGLATLSLGMWAHAYIL 262
                             LF          P+  T  S+ SACA L  L LG W H +I 
Sbjct: 259 NAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIR 318

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           R+    +   + + N+L DMY KCG +  A+ VF  M +RD+ SW+ II+G A++G A  
Sbjct: 319 RN---KIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 375

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A  +F  ++ E+   PN I+F+G+L+AC H G+V +G +YFD+M   Y ITP +EHYGC+
Sbjct: 376 AFNFFAEMI-EDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCV 434

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL+RAG +D+A  L+++MPM+P+ ++W +LL   C+ +      E V  +++E +   
Sbjct: 435 VDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG-CRIYKDAERGERVVWRILELDSN- 492

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            SG  V L+ VYAS  R +D    R  M D    K PGCS IEI+   +EFF GD+SHPQ
Sbjct: 493 HSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQ 552

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKP 561
           + +IY  +  +  K+K  GY P        +DE  + K+ +L  HSE+LA+A G++N   
Sbjct: 553 SLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDE--EEKEDALSTHSEKLALAFGLINTSE 610

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           G  IR+ KNLRVC DCH+  K+IS+I   EI+VRDR+RFHHFKDG CS
Sbjct: 611 GTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/606 (36%), Positives = 344/606 (56%), Gaps = 29/606 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMS--QL-KQIHAQALRTALPQQHKTLLIYSRIIH 76
           + +  +  G+  N  +L S+L  C +M   +L +Q+H+  ++      H  L     ++ 
Sbjct: 271 LLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKM---DAHSDLFAAVGLVD 327

Query: 77  FASFADL-DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
             S  ++ D A R +  +   +   WN LI   ++  D    A+ LF +M  + ++  ++
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGD-HLDAVSLFSKMFSE-DIDFNQ 385

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    LK+ A L A    KQ H    K G+ SD Y+ NSL+  Y  C H+D A+K+F+ 
Sbjct: 386 TTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE 445

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
                LV++  MI A+ Q+G+ + ALKL+ +MQ    +PD +   S+ +ACA L+    G
Sbjct: 446 RTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG 505

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H + ++      + D+  +NSL++MY KCGS++ A + F  +P R + SW+++I G+
Sbjct: 506 KQLHVHAIKF---GFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGY 562

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HG  + AL+ F++++  +   PN IT V VL ACNH G+V+EG+ YF+ M   + I P
Sbjct: 563 AQHGHGKEALRLFNQML-RDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKP 621

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             EHY C++DLL R+G ++EA+ LV+++P + D  +W +LL A  + H ++ L ++ AK 
Sbjct: 622 TQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAA-RIHKNIELGQKAAKM 680

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           + + E    SG +VLL+ +YASA  W +V  VRK M D  V KEPG S IEI    + F 
Sbjct: 681 LFDLEPEK-SGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFI 739

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD------DGKQSSLRLHSE 548
            GD SH ++ +IY  LD + + L   GY+        + E+D        K+  L  HSE
Sbjct: 740 VGDRSHSRSDEIYAKLDQLGDLLSKAGYSS-------IVEIDIHNVDKSEKEKLLYHHSE 792

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LA+A G++   PG PIRV KNLR+C DCH   K + +I + EIIVRD  RFHHFKDGSC
Sbjct: 793 KLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSC 852

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 853 SCGDYW 858



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 183/383 (47%), Gaps = 21/383 (5%)

Query: 51  QIHAQALRTALPQ----QHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           ++HA  ++    +    ++  + +YS+   F       YA ++  +    +  +W++L+ 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFG------YARKLVDESSELDVVSWSSLLS 55

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
              ++   + +A+++F  M   G V  ++ TFP  LKAC+     + G++ H      G 
Sbjct: 56  GYVQNGFVE-EALLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGF 113

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            SD ++ N+L+  YA CG LD + ++F  ++ER++VSWN +   +VQ      A+ LF+ 
Sbjct: 114 ESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKE 173

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M +    P+ ++   I +ACAGL    LG   H  +L+     L  D    N+L+DMY K
Sbjct: 174 MVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLK---MGLDLDQFSANALVDMYSK 230

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
            G ++ A  VF+ +   D+ SWN+II G  LH   + AL   D +    +  PN  T   
Sbjct: 231 AGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGT-RPNMFTLSS 289

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            L AC   G    GR     +I     + +    G LVD+ ++   +D+A     +MP K
Sbjct: 290 ALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP-K 347

Query: 406 PDAVIWRSLLDAC--CKKHASVV 426
            D + W +L+     C  H   V
Sbjct: 348 KDIIAWNALISGYSQCGDHLDAV 370


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/583 (38%), Positives = 329/583 (56%), Gaps = 11/583 (1%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           + L+S   E + +S  K++H+  +R+ L       +  S +  +A    +  A +VF  +
Sbjct: 266 TGLISVCAEIQFLSLGKELHSWVIRSGLVLD--LCVGCSLVDMYAKCGLVQEARKVFDGM 323

Query: 94  ENPNSFTWNTLIRACARSVDA-KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
              N  +W  L+    R     + +A+ +F  M+ QG V P+  TF   LKACA L  F 
Sbjct: 324 REHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFD 383

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H    K GL +   + N L+  YA  G ++ A K FD + E++LVS  V+ D  V
Sbjct: 384 FGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNV 443

Query: 213 QFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           +    +S   L R ++ +      +T+ S+ S  A + T+  G   HA +++       T
Sbjct: 444 KDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKI---GFRT 500

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           D+ VNN+LI MY KCG+ + A QVF  M   ++ +W SII GFA HG A  AL+ F  ++
Sbjct: 501 DLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNML 560

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            E    PN +T++ VLSAC+H G++ E   +F  M + + I P +EHY C+VDLL R+G 
Sbjct: 561 -ETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGL 619

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + EA+  +++MP   DA++WR+ L +C + H +  L E  AK ++E E       Y+LLS
Sbjct: 620 LSEAIEFINSMPFDADALVWRTFLGSC-RVHRNTKLGEHAAKMILEREPHD-PATYILLS 677

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YA+  RW DV  +RK M  K +TKE G S IE++   H+F  GDT HP+ +QIY  LD
Sbjct: 678 NLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLD 737

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +  K+K+ GY P+ +   + D  D+ K+  L  HSE+LA+A  +++     PIRVFKNL
Sbjct: 738 ELALKIKNVGYVPN-TDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNL 796

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH   K IS +   EI+VRD  RFHH KDG+CSC DYW
Sbjct: 797 RVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 174/346 (50%), Gaps = 20/346 (5%)

Query: 19  SIFNNNRNEGSFNNH----SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRI 74
           +  N    E + NN     S LL      K+    K +H +   + LP    TLL+ S I
Sbjct: 37  TTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLD--TLLLNSLI 94

Query: 75  IHFASFADLDYAFRVFYQIENP--NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
             ++   D   AF +F  +EN   +  +++++I   A + +   +A+ +F +++ Q  V 
Sbjct: 95  TLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNC-LKAVEMFDQLLLQDGVY 153

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV-SDVYINNSLIH-FYASCGHLDL-- 188
           P+++ F   ++AC     F  G      + K G   S V +   LI  F   C   DL  
Sbjct: 154 PNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLES 213

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACA 246
           A KVFD M E+++V+W +MI    Q+G  D A+ LF  M +   + PD +T   + S CA
Sbjct: 214 ARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCA 273

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            +  LSLG   H++++R     LV D+ V  SL+DMY KCG +  AR+VF+ M + ++ S
Sbjct: 274 EIQFLSLGKELHSWVIR---SGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMS 330

Query: 307 WNSIILGFALHGRA--EAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           W +++ G+   G      A++ F  ++++   +PN  TF GVL AC
Sbjct: 331 WTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKAC 376



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 165/350 (47%), Gaps = 19/350 (5%)

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           S ADL+ A +VF ++   N  TW  +I   A+      +AI LF  M+     +PD+ T 
Sbjct: 207 SLADLESARKVFDKMREKNVVTWTLMITRLAQ-YGYNDEAIDLFLEMLVSSGYVPDRFTL 265

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              +  CA +   S GK+ H+ + + GLV D+ +  SL+  YA CG +  A KVFD M E
Sbjct: 266 TGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMRE 325

Query: 199 RSLVSWNVMIDAFVQFGEF--DSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLG 254
            +++SW  +++ +V+ G      A+++F  M  Q    P+ +TF  +  ACA L     G
Sbjct: 326 HNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFG 385

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI---- 310
              H   ++     L     V N L+ +Y K G ++ AR+ F+ + +++L S   +    
Sbjct: 386 EQVHGQTIK---LGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTN 442

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           +  F L+   +      DR V       +S T+  +LS     G + +G +    M+ + 
Sbjct: 443 VKDFNLNSEQD-----LDREVEYVGSGVSSFTYASLLSGAACIGTIGKG-EQIHAMVVKI 496

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                L     L+ + ++ GN + AL + ++M    + + W S+++   K
Sbjct: 497 GFRTDLSVNNALISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAK 545



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 13/289 (4%)

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    LK C        GK  H  +    L  D  + NSLI  Y+       A  +F +M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 197 --LERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLS 252
              +R +VS++ +I  F        A+++F ++  Q    P+ Y F ++  AC       
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMY---CKCGSLDIARQVFESMPKRDLTSWNS 309
            G+    ++L+       + V V   LIDM+   C    L+ AR+VF+ M ++++ +W  
Sbjct: 174 TGLCLFGFVLK--TGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTL 231

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I   A +G  + A+  F  ++V   + P+  T  G++S C     +S G++    +I  
Sbjct: 232 MITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRS 291

Query: 370 YNITPVLEHYGC-LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             +  +    GC LVD+ A+ G + EA  +   M  + + + W +L++ 
Sbjct: 292 GLVLDLC--VGCSLVDMYAKCGLVQEARKVFDGMR-EHNVMSWTALVNG 337


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 326/595 (54%), Gaps = 78/595 (13%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F +I   N   +N +IR+   +      A+++F+ M   G + PD +T+P  LKA +  
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNN-HLYSDALLVFKNMAGHG-IDPDHYTYPCVLKASSGS 150

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G Q HA + + GL  +V++ N LI  Y  CG L  A +V D M  R +VSWN ++
Sbjct: 151 EDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLV 210

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQS----ITSAC-----------AGLATLS 252
               + G+FD AL++ + M++L  +PD  T  S    +T+ C             LA  S
Sbjct: 211 AGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKS 270

Query: 253 LGMW---------------AHAYILRHCDHSLVTD------------------------- 272
           L  W               A    L+  DH++  D                         
Sbjct: 271 LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHE 330

Query: 273 ----------VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
                     +L+ N+LIDMY KCG L+ AR+VF+ M  RD+ SW S+I  + ++G+   
Sbjct: 331 YVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRD 390

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A+  F R+  +   +P+SI FV VLSAC+H G++ EGR YF +M  E  I P +EH+ C+
Sbjct: 391 AVSLFSRM-QDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCM 449

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL RAG +DEA   +  MPM+P+  +W +LL A C+ ++++++    A Q+ +    +
Sbjct: 450 VDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA-CRVYSNMIIGLLAADQLFQ----L 504

Query: 443 C---SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
           C   SG YVLLS +YA A RW DV  VR +M  KG+ K PG S+ E+D   H F AGD S
Sbjct: 505 CPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQS 564

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HPQ+KQIY  LD+   K+K  GY P+ + +A+ D  ++ K+  L +HSE+LAIA  ILN 
Sbjct: 565 HPQSKQIYEELDVSVGKMKEAGYVPE-TDSALHDVEEEDKECHLAVHSEKLAIAFAILNT 623

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PG PIR+ KNLRVC DCH   KLIS+I   EI +RD  RFHHF +G CSC DYW
Sbjct: 624 APGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 135/271 (49%), Gaps = 16/271 (5%)

Query: 155 KQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           K+ H+ I     L S+  +   L+  YA CG       +FD + ++++V +NVMI ++V 
Sbjct: 55  KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 114

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
              +  AL +F+ M     +PD YT+  +  A +G   L +GM  HA ++R     L  +
Sbjct: 115 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVR---VGLDLN 171

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V N LI MY KCG L  A +V + MP RD+ SWNS++ G A +G+ + AL+    + +
Sbjct: 172 VFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMEL 231

Query: 333 EESFSPNSITFVGVLSACNHRGM--VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                P++ T   +L A  +  +  VS  ++ F  + N+  ++     +  ++ +     
Sbjct: 232 -LGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYMNNS 285

Query: 391 NIDEALHLVSNM---PMKPDAVIWRSLLDAC 418
              EA+ +   M    + PDA+   S+L AC
Sbjct: 286 MPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 43/256 (16%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           S+ S L  C  +S L   ++IH   +R  L  Q   LL  + I  +A    L+YA  VF 
Sbjct: 308 SIASVLPACGDLSALLLGRRIHEYVVRKRL--QPNLLLENALIDMYAKCGCLEYAREVFD 365

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           Q++  +  +W ++I A   +   +  A+ LF RM + G + PD   F   L AC++    
Sbjct: 366 QMKFRDVVSWTSMISAYGMNGKGR-DAVSLFSRMQDLG-LNPDSIAFVSVLSACSHAGLL 423

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +G+    + FK  +  +  I   + HF                           M+D  
Sbjct: 424 DEGR----YYFKL-MTEECKIVPRIEHFVC-------------------------MVDLL 453

Query: 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            + G+ D A    ++M +  EP+   + ++ SAC   + + +G+ A   + + C      
Sbjct: 454 GRAGQVDEAYGFIKQMPM--EPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGY 511

Query: 272 DVLVNNSLIDMYCKCG 287
            VL++N    +Y K G
Sbjct: 512 YVLLSN----IYAKAG 523


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/532 (39%), Positives = 317/532 (59%), Gaps = 13/532 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA--LK 143
           A ++FY++   +  ++N LI  CA +   + +++ LF+   E      D+  FPFA  L 
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVE-ESLELFR---ELQFTRFDRRQFPFATLLS 349

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
             A       G+Q H+       +S+V + NSL+  YA C     AN++F ++  +S V 
Sbjct: 350 IAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVP 409

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           W  +I  +VQ G  +  LKLF  M +     D  T+ SI  ACA LA+L+LG   H+ I+
Sbjct: 410 WTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRII 469

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           R      +++V   ++L+DMY KCGS+  A Q+F+ MP R+  SWN++I  +A +G    
Sbjct: 470 RS---GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGH 526

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           AL+ F++++      PNS++F+ +L AC+H G+V EG  YF+ M   Y + P  EHY  +
Sbjct: 527 ALRSFEQMI-HSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASM 585

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VD+L R+G  DEA  L++ MP +PD ++W S+L++C + H +  L+ + A Q+   +G  
Sbjct: 586 VDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSC-RIHKNQELAIKAADQLFNMKGLR 644

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +  YV +S +YA+A  W+ VG V+K + ++G+ K P  S +EI    H F A DTSHPQ
Sbjct: 645 DAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQ 704

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           TK+I   LD ++++++ +GY PD S  A+ +  ++ K  SL+ HSER+AIA  +++   G
Sbjct: 705 TKEITRKLDELEKQMEEQGYKPD-STCALHNVDEEVKVESLKYHSERIAIAFALISTPKG 763

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PI V KNLR C DCH   K+IS+I N EI VRD +RFHHF DGSCSC DYW
Sbjct: 764 SPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 189/390 (48%), Gaps = 21/390 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFADLDYAFRVFYQ 92
           ++LLS  TE +S++++ Q+H   ++        TL++ + ++  +     L  A  +F  
Sbjct: 143 ATLLSGFTEFESVNEVAQVHGHVVKVGYDS---TLMVCNSLLDSYCKTRSLGLACHLFKH 199

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   ++ T+N L+   ++       AI LF +M + G   P + TF   L A   +    
Sbjct: 200 MAEKDNVTFNALLTGYSKE-GFNHDAINLFFKMQDLG-FRPSEFTFAAVLTAGIQMDDIE 257

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H+ + K   V +V++ N+L+ FY+    +  A K+F  M E   +S+NV+I    
Sbjct: 258 FGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCA 317

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G  + +L+LFR +Q   F+   + F ++ S  A    L +G   H+        ++VT
Sbjct: 318 WNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHS-------QAIVT 370

Query: 272 D----VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           D    VLV NSL+DMY KC     A ++F  +  +    W ++I G+   G  E  LK F
Sbjct: 371 DAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLF 430

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +        +S T+  +L AC +   ++ G+     +I    ++ V      LVD+ A
Sbjct: 431 VEM-HRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSG-SALVDMYA 488

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + G+I EAL +   MP++ ++V W +L+ A
Sbjct: 489 KCGSIKEALQMFQEMPVR-NSVSWNALISA 517



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 173/370 (46%), Gaps = 12/370 (3%)

Query: 54  AQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ L   +P  HK ++   + I+ +    +L  A  +F  +   +  TW  LI   A+  
Sbjct: 61  ARKLFDEMP--HKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQH- 117

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
           +   +A  LF  M   G ++PD  T    L       + ++  Q H H+ K G  S + +
Sbjct: 118 NRFLEAFNLFADMCRHG-MVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMV 176

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
            NSL+  Y     L LA  +F +M E+  V++N ++  + + G    A+ LF +MQ L F
Sbjct: 177 CNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGF 236

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            P  +TF ++ +A   +  +  G   H+++++ C+   V +V V N+L+D Y K   +  
Sbjct: 237 RPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVK-CN--FVWNVFVANALLDFYSKHDRIVE 293

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           AR++F  MP+ D  S+N +I   A +GR E +L+ F  L     F      F  +LS   
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTR-FDRRQFPFATLLSIAA 352

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           +   +  GR      I    I+ VL     LVD+ A+     EA  + +++  +  +V W
Sbjct: 353 NSLNLEMGRQIHSQAIVTDAISEVLVG-NSLVDMYAKCDKFGEANRIFADLAHQ-SSVPW 410

Query: 412 RSLLDACCKK 421
            +L+    +K
Sbjct: 411 TALISGYVQK 420



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 39/309 (12%)

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANK--------------------------- 191
           A + K G   +    N  +  +   G L  A K                           
Sbjct: 31  ASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLS 90

Query: 192 ----VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
               +FD+M++RS+V+W ++I  + Q   F  A  LF  M +    PD  T  ++ S   
Sbjct: 91  TARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFT 150

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
              +++     H ++++       + ++V NSL+D YCK  SL +A  +F+ M ++D  +
Sbjct: 151 EFESVNEVAQVHGHVVK---VGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVT 207

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +N+++ G++  G    A+  F ++  +  F P+  TF  VL+A      +  G+     +
Sbjct: 208 FNALLTGYSKEGFNHDAINLFFKM-QDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV 266

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
           + + N    +     L+D  ++   I EA  L   MP + D + +  L+  CC  +  V 
Sbjct: 267 V-KCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLI-TCCAWNGRVE 323

Query: 427 LSEEVAKQV 435
            S E+ +++
Sbjct: 324 ESLELFREL 332


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/604 (36%), Positives = 334/604 (55%), Gaps = 27/604 (4%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTA----LPQQHKTLLIYSR 73
           F   R  G   +H+   S L  C  M  L+    +H   +R      L   +  + +YS+
Sbjct: 93  FVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSK 152

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           ++       +D   +VF  +   +  ++NT+I   A+S     +  +   R +   ++ P
Sbjct: 153 LL------GIDSVRKVFELMPRKDVVSYNTVIAGYAQS--GMYEDALRMVREMGTSDLKP 204

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  T    L   +      +GK+ H ++ ++G+ SDVYI +SL+  YA    ++ + +VF
Sbjct: 205 DAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 264

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
            ++  R  +SWN ++  +VQ G ++ AL+LFR+M      P    F S+  ACA LATL 
Sbjct: 265 SHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLH 324

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG   H Y+LR        ++ + ++L+DMY KCG++  AR++F+ M   D  SW +II+
Sbjct: 325 LGKQLHGYVLRG---GFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIM 381

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G ALHG    A+  F+ +   +   PN + FV VL+AC+H G+V E   YF+ M   Y +
Sbjct: 382 GHALHGHGHEAVSLFEEMK-RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 440

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
              LEHY  + DLL RAG ++EA   +S M ++P   +W +LL +C   H ++ L+E+VA
Sbjct: 441 NQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSC-SVHKNLELAEKVA 499

Query: 433 KQV--IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
           +++  I+SE     G YVL+  +YAS  RW ++  +R  +  KG+ K+P CS IE+    
Sbjct: 500 EKIFTIDSEN---MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKT 556

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F +GD SHP   +I  FL  + E+++  GY  D S   + D  ++ K+  L  HSERL
Sbjct: 557 HGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTS-GVLHDVDEEHKRELLFGHSERL 615

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A GI+N +PG  IRV KN+R+C DCH   K IS+I   EIIVRD +RFHHF  GSCSC
Sbjct: 616 AVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSC 675

Query: 611 MDYW 614
            DYW
Sbjct: 676 GDYW 679



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 201/411 (48%), Gaps = 23/411 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRT-ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +L+ + T  KS SQ KQ+HAQ +RT +L     +++I      + +   L  A  VF  +
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISI----YTNLKLLHEALLVFKTL 65

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           E+P    W ++IR C        +A+  F  M   G   PD + FP  LK+C  +     
Sbjct: 66  ESPPVLAWKSVIR-CFTDQSLFSRALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRF 123

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+  H  I + G+  D+Y  N+L++ Y+    +D   KVF+ M  + +VS+N +I  + Q
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQ 183

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G ++ AL++ R M     +PD +T  S+    +    +  G   H Y++R     + +D
Sbjct: 184 SGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIR---KGIDSD 240

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V + +SL+DMY K   ++ + +VF  + +RD  SWNS++ G+  +GR   AL+ F R +V
Sbjct: 241 VYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLF-RQMV 299

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITPVLEHYGCLVDLLARA 389
                P ++ F  V+ AC H   +  G+     ++      NI         LVD+ ++ 
Sbjct: 300 SAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIA----SALVDMYSKC 355

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIE 437
           GNI  A  +   M +  D V W +++         H +V L EE+ +Q ++
Sbjct: 356 GNIQAARKIFDRMNLH-DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 405


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 311/523 (59%), Gaps = 10/523 (1%)

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +E  +  +WN+LI  C R    +  A+  FQ+M  + ++  D++T P  L + A +    
Sbjct: 1   MEFDDEVSWNSLILGCVRE-GFEEDALSFFQKMRSR-DMKIDEYTLPSVLNSFASMKVMQ 58

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
                H  I K G  +   +NN+LI  YA  G LD A  VF  M+++ +VSW  ++  + 
Sbjct: 59  NAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYS 118

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G ++ A+KLF +M+I    PD     S+ SACA L  +  G   HA +++     L +
Sbjct: 119 HNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS---GLES 175

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
            + V+NSL+ MY KCGS+  A + F++MP RD+ SW ++I+G+A +GR + +L+++D+++
Sbjct: 176 SLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMI 235

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
              +  P+ ITF+G+L AC+H G++  GR YF+ M   Y I P  EHY C++DLL R+G 
Sbjct: 236 ATGT-KPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGK 294

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + EA  L++ M + PDAV+W++LL A C+ H  + L E  AK + E E  + S  YV+LS
Sbjct: 295 LAEAKGLLNQMVVAPDAVVWKALL-AACRVHKELELGEMAAKNLFELEP-MNSMPYVMLS 352

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +Y++A +W D   +R+LM  +G+ KEPG S IE +     F + D +HP   +IY  +D
Sbjct: 353 NMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKID 412

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            I   +K  GY PD S  A+ D  D+ K+  L  HSE+LA+A G+L +  G PIR+FKNL
Sbjct: 413 EIIMLIKEAGYVPDMS-FALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNL 471

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH   K  S+++   II+RD   FHHF +G CSC DYW
Sbjct: 472 RVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 322/578 (55%), Gaps = 12/578 (2%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           +L+ C  +  L+   +   R         + + S ++H +A +  +  A +VF ++   +
Sbjct: 114 ALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRD 173

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
             TW+T++ A   S      AI +++RM E G V  D+      ++AC        G   
Sbjct: 174 RVTWSTMV-AGFVSAGQPLDAIQMYRRMREDG-VKGDEVVMIGVIQACTAARNVRMGASV 231

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H H+ + G+  DV    SL+  YA  G LD+A +VF  M+ R+ VSW+ MI  F Q G+ 
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQS 291

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           D AL+LFR MQ    +PD     S   AC+ +  L LG   H +I+R  D     + ++ 
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF----NCILG 347

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            + IDMY KCGSL  A+ +F  +  RDL  WN++I     HGR + AL  F  +  E   
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN-ETGM 406

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+  TF  +LSA +H G+V EG+ +F  M+N + ITP  +HY CLVDLLAR+G ++EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
            L+++M  +P   IW +LL  C   +  + L E +A  ++E +     GV  L+S +YA+
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLN-NKKLELGESIADNILELQPDDV-GVLALVSNLYAA 524

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
            ++W+ V  VRKLM D G  K PGCSSIEI G  H F   D SHPQ ++I   +  +D +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLE 584

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           ++  GY P  ++    D  ++ K+  L  HSERLAIA G+LN  PG  + + KNLRVC D
Sbjct: 585 MRKMGYIP-RTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH+  K IS+I + EI+VRD  RFHHFKDG CSC DYW
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 151/292 (51%), Gaps = 9/292 (3%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  TF  AL ACA L     G+      F  G   DV++ +SL+H YA  G +  A KV
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
           F  M  R  V+W+ M+  FV  G+   A++++RRM +   + D      +  AC     +
Sbjct: 166 FVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            +G   H ++LR   H +  DV+   SL+DMY K G LD+A +VF  M  R+  SW+++I
Sbjct: 226 RMGASVHGHLLR---HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GFA +G+++ AL+ F R +      P+S   V  L AC++ G +  GR     ++  ++
Sbjct: 283 SGFAQNGQSDEALRLF-RNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFD 341

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
              +L      +D+ ++ G++  A  ++ NM    D ++W +++ ACC  H 
Sbjct: 342 FNCILGTAA--IDMYSKCGSLASA-QMLFNMISDRDLILWNAMI-ACCGAHG 389


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 322/578 (55%), Gaps = 12/578 (2%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           +L+ C  +  L+   +   R         + + S ++H +A +  +  A +VF ++   +
Sbjct: 114 ALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRD 173

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
             TW+T++ A   S      AI +++RM E G V  D+      ++AC        G   
Sbjct: 174 RVTWSTMV-AGFVSAGQPLDAIQMYRRMREDG-VKGDEVVMIGVIQACTAARNVRMGASV 231

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H H+ + G+  DV    SL+  YA  G LD+A +VF  M+ R+ VSW+ MI  F Q G+ 
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQS 291

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           D AL+LFR MQ    +PD     S   AC+ +  L LG   H +I+R  D     + ++ 
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF----NCILG 347

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            + IDMY KCGSL  A+ +F  +  RDL  WN++I     HGR + AL  F  +  E   
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN-ETGM 406

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+  TF  +LSA +H G+V EG+ +F  M+N + ITP  +HY CLVDLLAR+G ++EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
            L+++M  +P   IW +LL  C   +  + L E +A  ++E +     GV  L+S +YA+
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLN-NKKLELGESIADNILELQPDDV-GVLALVSNLYAA 524

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
            ++W+ V  VRKLM D G  K PGCSSIEI G  H F   D SHPQ ++I   +  +D +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLE 584

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           ++  GY P  ++    D  ++ K+  L  HSERLAIA G+LN  PG  + + KNLRVC D
Sbjct: 585 MRKMGYIP-RTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH+  K IS+I + EI+VRD  RFHHFKDG CSC DYW
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 151/292 (51%), Gaps = 9/292 (3%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  TF  AL ACA L     G+      F  G   DV++ +SL+H YA  G +  A KV
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
           F  M  R  V+W+ M+  FV  G+   A++++RRM +   + D      +  AC     +
Sbjct: 166 FVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            +G   H ++LR   H +  DV+   SL+DMY K G LD+A +VF  M  R+  SW+++I
Sbjct: 226 RMGASVHGHLLR---HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GFA +G+++ AL+ F R +      P+S   V  L AC++ G +  GR     ++  ++
Sbjct: 283 SGFAQNGQSDEALRLF-RNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFD 341

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
              +L      +D+ ++ G++  A  ++ NM    D ++W +++ ACC  H 
Sbjct: 342 FNCILGTAA--IDMYSKCGSLASA-QMLFNMISDRDLILWNAMI-ACCGAHG 389


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/550 (38%), Positives = 326/550 (59%), Gaps = 44/550 (8%)

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
            +W +LI A +R+  A+ +A+  F+ M+  G + PD+ T    L ACA L     G+  H
Sbjct: 205 ISWTSLIAAYSRANRAR-EAVGCFKTMLSHG-IAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCG--------------------------------HL 186
             + ++G+ +   +  +LI  YA CG                                H+
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHV 322

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
           D+A  +FD M  R ++++N M+  ++  G+   AL LF  M+      D +T  ++ +AC
Sbjct: 323 DVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTAC 382

Query: 246 AGLATLSLGMWAHAYILRHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           A L  L  G   HA I    +  LV  D+ +  +L+DMY KCG +D A  VF+ M KRD+
Sbjct: 383 ASLGALQQGRALHACI----EQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDV 438

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +W ++I G A +G  +AAL++F ++  +  F PNS++++ VL+AC+H  +++EGR YFD
Sbjct: 439 HTWTAMIAGLAFNGMGKAALEHFYQMRCD-GFQPNSVSYIAVLTACSHSCLLNEGRLYFD 497

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M   YNI P +EHYGC++DLL R+G +DEA+ LV  MP++P+AVIW S+L AC + H  
Sbjct: 498 EMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSAC-RVHKH 556

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           + L++  A+ +++ E     GVYV L  +Y  +R+W +   +R LM ++ V K  G SSI
Sbjct: 557 IDLAQCAAEHLLKLEPDE-DGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSI 615

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
            + G  H+F   D SHP+  +I   L+ I  +LKS GY+P  SQ   VD  ++ K+ +L 
Sbjct: 616 TVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQIT-VDVDEEEKEQALL 674

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAIA G++NL P +P+ + KNLRVC+DCH   KLISR++N EIIVRDR+RFHHF+
Sbjct: 675 AHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFR 734

Query: 605 DGSCSCMDYW 614
           +G+CSC D+W
Sbjct: 735 EGTCSCNDFW 744



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 166/401 (41%), Gaps = 76/401 (18%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L YA  +F ++  P++F ++T +RAC+R+     +  +LF+RM   G V PD  TF F  
Sbjct: 53  LRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAG-VRPDGFTFHFLF 110

Query: 143 KACAYLFAFSQG----KQAHAHIFKRGLVSDV-YINNSLIHFYASCGHLDLANKVFDNML 197
           K C+   +           HA   +  L S   +++NSLIH Y   G    A + FD + 
Sbjct: 111 K-CSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIH 169

Query: 198 ERSLVSWNVMIDAFVQFG------------------EFDSALKLFRRMQILFE------- 232
            +  V+W ++I    + G                   + S +  + R     E       
Sbjct: 170 VKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKT 229

Query: 233 -------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                  PD  T  ++ SACA L  L LG   H  +    +  + T   +  +LIDMY K
Sbjct: 230 MLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVE---EKGMPTSENLVVALIDMYAK 286

Query: 286 CGSLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI--- 341
           CG    A+QVF+++ +     SWN+II G+  HG  + A   FD + V +  + NS+   
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346

Query: 342 ---------------------------TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
                                      T V +L+AC   G + +GR      I +  +  
Sbjct: 347 YIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGR-ALHACIEQRLVEA 405

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +     L+D+  + G +DEA  +   M  K D   W +++
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMI 445



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 15/293 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +L+    +C      +Q+     R   PQ    +     I  +     +D A  +F ++E
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAI-----IDGYCKHGHVDVARSLFDEME 333

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  T+N+++     S   + +A++LF  M  + ++  D  T    L ACA L A  QG
Sbjct: 334 VRDIITFNSMMTGYIHSGQLR-EALLLFMSM-RRHDLRVDNFTVVNLLTACASLGALQQG 391

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  HA I +R + +D+Y+  +L+  Y  CG +D A  VF  M +R + +W  MI      
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451

Query: 215 GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVT 271
           G   +AL+ F +M+   F+P+  ++ ++ +AC+    L+ G   +    IL    +++  
Sbjct: 452 GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRIL----YNIHP 507

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAA 323
            +     +ID+  + G LD A  + ++MP + +   W SI+    +H   + A
Sbjct: 508 QIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 112/272 (41%), Gaps = 41/272 (15%)

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFG-EFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           HL  A  +FD M   + + ++  + A  + G +      LFRRM+     PDG+TF  + 
Sbjct: 52  HLRYALHLFDRMPPSTFL-FDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLF 110

Query: 243 SACAGLA---TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
              +  +   +L L    HA  LR    S      V+NSLI MY + G    AR+ F+ +
Sbjct: 111 KCSSSSSRPHSLLLCTMLHAACLRTMLPSAAP--FVSNSLIHMYIRLGLAADARRAFDEI 168

Query: 300 -------------------------------PKRDLTSWNSIILGFALHGRAEAALKYFD 328
                                          P RD+ SW S+I  ++   RA  A+  F 
Sbjct: 169 HVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCF- 227

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           + ++    +P+ +T + VLSAC     +  GR    +++ E  +         L+D+ A+
Sbjct: 228 KTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTSENLVVALIDMYAK 286

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            G+   A  +   +   P    W +++D  CK
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK 318


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 326/583 (55%), Gaps = 14/583 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYS-RIIHFASFADLDYAFRVFYQ 92
           +SL+    +C+S+   ++      +T L   +  L  Y+ R  H  +   L     + +Q
Sbjct: 402 NSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLS---EMKFQ 458

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
              P+  TWN L+    +  D K  A+  FQRM   G + P+  T   AL AC  +    
Sbjct: 459 GIEPDIITWNGLVTGFTQYGDGKA-ALEFFQRMHSMG-MDPNTTTISGALAACGQVRNLK 516

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GK+ H ++ +  +     + ++LI  Y+ C  L++A  VF  +  R +V WN +I A  
Sbjct: 517 LGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA 576

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q G   +AL L R M +   E +  T  S   AC+ LA L  G   H +I+R C   L T
Sbjct: 577 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR-C--GLDT 633

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              + NSLIDMY +CGS+  +R++F+ MP+RDL SWN +I  + +HG    A+  F +  
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 693

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 PN ITF  +LSAC+H G++ EG  YF +M  EY + P +E Y C+VDLL+RAG 
Sbjct: 694 TM-GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
            +E L  +  MP +P+A +W SLL AC + H +  L+E  A+ + E E    SG YVL++
Sbjct: 753 FNETLEFIEKMPFEPNAAVWGSLLGAC-RIHCNPDLAEYAARYLFELEPQ-SSGNYVLMA 810

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +Y++A RW D   +R LM ++GVTK PGCS IE+    H F  GDTSHP  +QI   ++
Sbjct: 811 NIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKME 870

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +   +K  GY PD +   + D  +D K+ SL  HSE++A+A G+++   G P+R+ KNL
Sbjct: 871 SLYFDIKEIGYVPD-TNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNL 929

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH  TK IS++   +II+RD  RFHHF DG CSC DYW
Sbjct: 930 RVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 217/526 (41%), Gaps = 139/526 (26%)

Query: 28  GSFNNHSSLLSS----------------LTECKSMSQLK---QIHAQALRTALPQQHKTL 68
           G  NN + LLSS                L +C+ +  L+   Q+HAQ +   +       
Sbjct: 68  GVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCE--- 124

Query: 69  LIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            + SR++  +     ++ A R+F ++   N F+W  ++       D + + I LF  M+ 
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYE-ETIKLFYLMVN 183

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +G V PD   FP   KAC+ L  +  GK  + ++   G   +  +  S++  +  CG +D
Sbjct: 184 EG-VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 188 LANKVFDNM--------------------LERSL---------------VSWNVMIDAFV 212
           +A + F+ +                     +++L               V+WN +I  + 
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYA 302

Query: 213 QFGEFDSALKLFRRMQIL--FEPD--------------GYTFQSIT-------------- 242
           Q G+F+ A K F  M  L  F+P+              GY F++++              
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362

Query: 243 -------SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
                  SAC  L+ L  G   H Y ++     L +D+LV NSL+D Y KC S+++AR+ 
Sbjct: 363 ITIASAVSACTNLSLLRHGREIHGYCIKV--EELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 296 FESMPKRDLTSWNSIILGFALHGRAE---------------------------------- 321
           F  + + DL SWN+++ G+AL G  E                                  
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 322 -AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHY 379
            AAL++F R+       PN+ T  G L+AC     +  G++    V+ N   ++  +   
Sbjct: 481 KAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG-- 537

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
             L+ + +   +++ A  + S +  + D V+W S++ AC +   SV
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTR-DVVVWNSIISACAQSGRSV 582


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/613 (37%), Positives = 341/613 (55%), Gaps = 19/613 (3%)

Query: 4   AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQ 63
           ++ Q G  TPQ       N   +E  + +   LL S T  +S+ + +QIHA  +++ L  
Sbjct: 32  SLSQEGTITPQNSP----NRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGL-- 85

Query: 64  QHKTLLIYSRIIHFASFADLDY-AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
                L+   +I+F S   L   + +VF + E  +S TW+++I + A++ +    AI  F
Sbjct: 86  -QVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQN-EEPVLAIQYF 143

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
            RMI + N+ PD H FP A KACA L     GK  H  + K G   DV++ +SL+  YA 
Sbjct: 144 CRMIGE-NLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAK 202

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
           CG +  A  VFD M  R++VSW+ MI  + Q GE + A++LF+   +   + + +T  S+
Sbjct: 203 CGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSV 262

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
              C     L LG   H    +    S      V +SLI +Y KCG ++ A +VF+ +P 
Sbjct: 263 IRVCGSATLLELGKQIHGLCFKT---SYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPI 319

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           ++L  WN++++  A H   + A   F ++       PN ITF+ VL AC+H G+V EG+ 
Sbjct: 320 KNLGMWNAMLIACAQHAHTKEAFDLFTKME-NAGMRPNFITFLCVLYACSHAGLVEEGKK 378

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           YF +M  +Y I P  +HY  +VDLL RAG + EAL ++  MP +P   +W + +  C + 
Sbjct: 379 YFALM-KKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGC-RI 436

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +  L+   A +V E  G + SG++V+LS  YA+A R+ D    RK++ D+GV KE G 
Sbjct: 437 HGNTDLAAFAADKVFEL-GAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGL 495

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S IE     H+F AGD  H + K+IY  L+ + E+++  GY  D S   + +   + K  
Sbjct: 496 SWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTS-FVLREVGSEEKNQ 554

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           ++R HSERLAIA G++++  G PIR+ KNLRVC DCH   K IS++    IIVRD  RFH
Sbjct: 555 TIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFH 614

Query: 602 HFKDGSCSCMDYW 614
            F+DG CSC DYW
Sbjct: 615 RFEDGKCSCADYW 627


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/540 (40%), Positives = 318/540 (58%), Gaps = 15/540 (2%)

Query: 83  LDYAFRVFYQIENP---NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           L  A RVF ++      +  +WN +I AC +  +   +A+ LF+ M+ +G +  D  T  
Sbjct: 190 LSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGM-EAVGLFREMVRRG-LKVDMFTMA 247

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC-GHLDLANKVFDNMLE 198
             L A   +     G+Q H  + K G   + ++ + LI  Y+ C G +    KVF+ +  
Sbjct: 248 SVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITA 307

Query: 199 RSLVSWNVMIDAFVQFGEF-DSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMW 256
             LV WN MI  F  + +  +  L  FR MQ   F PD  +F  +TSAC+ L++ SLG  
Sbjct: 308 PDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQ 367

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA  ++         V VNN+L+ MY KCG++  AR+VF++MP+ +  S NS+I G+A 
Sbjct: 368 VHALAIK--SDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQ 425

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HG    +L+ F+ L++E+  +PNSITF+ VLSAC H G V EG+ YF++M   + I P  
Sbjct: 426 HGVEVESLRLFE-LMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEA 484

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           EHY C++DLL RAG + EA  ++  MP  P ++ W +LL A C+KH +V L+ + A + +
Sbjct: 485 EHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGA-CRKHGNVELAVKAANEFL 543

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
             E    +  YV+LS +YASA RW +   V++LM ++GV K+PGCS IEID   H F A 
Sbjct: 544 RLE-PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAE 602

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE--LDDGKQSSLRLHSERLAIAL 554
           DTSHP  K+I+ ++  + +K+K  GY PD   A + DE    D ++  L  HSE+LA+A 
Sbjct: 603 DTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAF 662

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G+++ + G+PI V KNLR+C DCH   KLIS +   EI VRD  RFH FK+G CSC DYW
Sbjct: 663 GLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 163/349 (46%), Gaps = 19/349 (5%)

Query: 64  QHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
           Q+  +  Y+ +I+ +A  + +  A RVF +I  P+  ++NTLI A A   +  P  + LF
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGP-TLRLF 129

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           + + E    L D  T    + AC         +Q H  +   G      +NN+++  Y+ 
Sbjct: 130 EEVRELRLGL-DGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSR 186

Query: 183 CGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            G L  A +VF  M E   R  VSWN MI A  Q  E   A+ LFR M +   + D +T 
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTM 246

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-GSLDIARQVFE 297
            S+ +A   +  L  G   H  +++   H    +  V + LID+Y KC GS+   R+VFE
Sbjct: 247 ASVLTAFTCVKDLVGGRQFHGMMIKSGFHG---NSHVGSGLIDLYSKCAGSMVECRKVFE 303

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            +   DL  WN++I GF+L+        +  R +    F P+  +FV V SAC++    S
Sbjct: 304 EITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPS 363

Query: 358 EGRDYFDVMINE---YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
            G+    + I     YN   V      LV + ++ GN+ +A  +   MP
Sbjct: 364 LGKQVHALAIKSDVPYNRVSV---NNALVAMYSKCGNVHDARRVFDTMP 409



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 133/319 (41%), Gaps = 46/319 (14%)

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD-------- 187
            TF   LKAC        GK  HA  FK  +    Y++N     Y+ CG L         
Sbjct: 10  QTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHL 69

Query: 188 -----------------------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                                  +A +VFD + +  +VS+N +I A+   GE    L+LF
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLF 129

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             ++ L    DG+T   + +AC     + L    H +++  C H       VNN+++  Y
Sbjct: 130 EEVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVV-CGHDCYAS--VNNAVLACY 184

Query: 284 CKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
            + G L  AR+VF  M +   RD  SWN++I+    H     A+  F R +V      + 
Sbjct: 185 SRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLF-REMVRRGLKVDM 243

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC-LVDLLAR-AGNIDEALHL 398
            T   VL+A      +  GR +  +MI          H G  L+DL ++ AG++ E   +
Sbjct: 244 FTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGN--SHVGSGLIDLYSKCAGSMVECRKV 301

Query: 399 VSNMPMKPDAVIWRSLLDA 417
              +   PD V+W +++  
Sbjct: 302 FEEI-TAPDLVLWNTMISG 319



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 24/158 (15%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +V   N+LI+ Y K   + IAR+VF+ +P+ D+ S+N++I  +A  G     L+ F+  V
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEE-V 132

Query: 332 VEESFSPNSITFVGVLSACN---------HRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
            E     +  T  GV++AC          H  +V  G D +  + N      VL  Y   
Sbjct: 133 RELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNN-----AVLACY--- 184

Query: 383 VDLLARAGNIDEALHLVSNMPMKP--DAVIWRSLLDAC 418
               +R G + EA  +   M      D V W +++ AC
Sbjct: 185 ----SRKGFLSEARRVFREMGEGGGRDEVSWNAMIVAC 218


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/530 (39%), Positives = 316/530 (59%), Gaps = 10/530 (1%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A++VF  +   N  +W  +I  C      + +A+ LF+ ++E G + PD       L+AC
Sbjct: 158 AWKVFDDMVVKNVVSWTGMICGCIEFGKFR-EAVDLFRGLLESG-LRPDGFVIVRVLRAC 215

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L     G+     + + GL  +V++  SL+  Y  CG ++ A  VFD M+E+ +V W+
Sbjct: 216 ARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWS 275

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  +   G    A++LF  M ++   PD Y      S+CA L  L LG WA   +   
Sbjct: 276 AMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYE 335

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                +++ ++  SLID Y KCGS++ A  V++ M ++D   +N++I G A++G+  AA 
Sbjct: 336 ---EFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAF 392

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F ++  +    PN  TFVG+L  C H G+V +GR YF+ M +++++TP +EHYGC+VD
Sbjct: 393 GVFGQMG-KFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVD 451

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LLARAG +DEA +L+  MPMK + ++W SLL   C+ H    L+E V KQ+IE E    S
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGG-CRLHRETQLAEHVLKQLIELE-PWNS 509

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YVLLS +Y+++RRW++   +R  + +KG+ K PG S +E+DG+ HEF  GDTSHP ++
Sbjct: 510 GHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQ 569

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +IY  L+ + + LK  GY P  ++  + D  ++ K+  L  HSE+LA+A  +++      
Sbjct: 570 KIYEKLESLFKDLKEAGYNPT-TEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYV 628

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCHE  K IS++   EI++RD  RFH F DG+CSC DYW
Sbjct: 629 IRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 202/378 (53%), Gaps = 15/378 (3%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTLLIYSR-IIHFASFADLDYAFRVFYQI-ENPNSFTW 101
           K +   K  H + LR  L   +  L I  R  I+F++ A   Y   VF++   N N+F +
Sbjct: 15  KCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQ--YPILVFHKTPTNSNTFLY 72

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           NT+IR    S D    A+ L+  M  +  ++PD  TF F LKACA L  F  G   H+ +
Sbjct: 73  NTMIRGMV-SKDRFNNAVHLYASM-HKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLV 130

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
           FK G   DV++  +++ FY+ CG L  A KVFD+M+ +++VSW  MI   ++FG+F  A+
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAV 190

Query: 222 KLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
            LFR  ++    PDG+    +  ACA L  L  G W     +R C   L  +V V  SL+
Sbjct: 191 DLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDR-CMREC--GLSRNVFVATSLV 247

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCGS++ AR VF+ M ++D+  W+++I G+A +G    A++ F  +  + +  P+ 
Sbjct: 248 DMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEM-RKVNVRPDC 306

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVM-INEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
              VG LS+C   G +  G     +M   E+   PVL     L+D  A+ G+++EAL + 
Sbjct: 307 YAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEEALGVY 364

Query: 400 SNMPMKPDAVIWRSLLDA 417
             M  K D V++ +++  
Sbjct: 365 KMMKEK-DRVVFNAVISG 381


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 322/578 (55%), Gaps = 12/578 (2%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           +L+ C  +  L+   +   R         + + S ++H +A +  +  A +VF ++   +
Sbjct: 114 ALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRD 173

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
             TW+T++ A   S      AI +++RM E G V  D+      ++AC        G   
Sbjct: 174 RVTWSTMV-AGFVSAGQPLDAIQMYRRMREDG-VKGDEVVMIGVIQACTAARNVRMGASV 231

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H H+ + G+  DV    SL+  YA  G LD+A +VF  M+ R+ VSW+ MI  F Q G+ 
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQS 291

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           D AL+LFR MQ    +PD     S   AC+ +  L LG   H +I+R  D     + ++ 
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF----NCILG 347

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            + IDMY KCGSL  A+ +F  +  RDL  WN++I     HGR + AL  F  +  E   
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN-ETGM 406

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+  TF  +LSA +H G+V EG+ +F  M+N + ITP  +HY CLVDLLAR+G ++EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
            L+++M  +P   IW +LL  C   +  + L E +A  ++E +     GV  L+S +YA+
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLN-NKKLELGESIADNILELQPDDV-GVLALVSNLYAA 524

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
            ++W+ V  VRKLM D G  K PGCSSIEI G  H F   D SHPQ ++I   +  +D +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLE 584

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           ++  GY P  ++    D  ++ K+  L  HSE+LAIA G+LN  PG  + + KNLRVC D
Sbjct: 585 MRKMGYIP-RTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH+  K IS+I + EI+VRD  RFHHFKDG CSC DYW
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 152/292 (52%), Gaps = 9/292 (3%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  TF  AL ACA L     G+      F  G   DV++ +SL+H YA  G +  A KV
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATL 251
           FD M  R  V+W+ M+  FV  G+   A++++RRM +   + D      +  AC     +
Sbjct: 166 FDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            +G   H ++LR   H +  DV+   SL+DMY K G LD+A +VF  M  R+  SW+++I
Sbjct: 226 RMGASVHGHLLR---HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GFA +G+++ AL+ F R +      P+S   V  L AC++ G +  GR     ++  ++
Sbjct: 283 SGFAQNGQSDEALRLF-RNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFD 341

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
              +L      +D+ ++ G++  A  ++ NM    D ++W +++ ACC  H 
Sbjct: 342 FNCILGTAA--IDMYSKCGSLASA-QMLFNMISDRDLILWNAMI-ACCGAHG 389


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 327/571 (57%), Gaps = 17/571 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           KQ+H  A+++ L       +  S +  ++      +A  VF  +++ +  +WN++I +CA
Sbjct: 306 KQVHGIAVKSGLDSD--VSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 363

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFP-----FALKACAYLFAFSQGKQAHAHIFKR 164
           +S   + +++ LF  ++ +G + PD  T        A KAC  L    QGKQ HAH  K 
Sbjct: 364 QS-SLEEESVNLFIDLLHEG-LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA 421

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G  SD+++N+ ++  Y  CG +  A  VF+ +     V+W  MI   V  G  D AL+++
Sbjct: 422 GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 481

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
            RM Q    PD YTF ++  A + +  L  G   HA +++      V+D  V  SL+DMY
Sbjct: 482 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL---DCVSDPFVGTSLVDMY 538

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG+++ A ++F+ M  R++  WN++++G A HG AE A+  F + +      P+ ++F
Sbjct: 539 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLF-KSMKSHGIEPDRVSF 597

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           +G+LSAC+H G+ SE  +Y   M N+Y I P +EHY CLVD L RAG + EA  ++  MP
Sbjct: 598 IGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMP 657

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
            K  A I R+LL AC +    V   + VA ++   E    S  YVLLS +YA+A RW+DV
Sbjct: 658 FKASASINRALLGAC-RIQGDVETGKRVAARLFALEP-FDSAAYVLLSNIYAAANRWDDV 715

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
              RK+M  K V K+PG S I++  + H F   D SHPQ   IY  ++ + + ++  GY 
Sbjct: 716 TDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV 775

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD ++  ++D  D+ K+ SL  HSE+LAIA G+++      IRV KNLRVC DCH   K 
Sbjct: 776 PD-TEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKY 834

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++F  EI++RD  RFHHF+DG CSC DYW
Sbjct: 835 ISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 163/353 (46%), Gaps = 17/353 (4%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK----PQAIVLFQRMIEQGNVL 132
           ++    L  A +VF      +  TWN ++ A A SVD+      + + LF R++      
Sbjct: 122 YSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGS 180

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
             + T    LK C         +  H +  K GL  DV+++ +L++ Y+ CG +  A  +
Sbjct: 181 TTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLL 240

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC--AGLA 249
           FD M ER +V WN+M+  +VQ G    A +LF    +    PD ++ Q I + C  AG  
Sbjct: 241 FDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTD 300

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L LG   H   ++     L +DV V NSL++MY K G    AR+VF  M   DL SWNS
Sbjct: 301 DLELGKQVHGIAVK---SGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNS 357

Query: 310 IILGFALHGRAEAALKYFDRLVVE----ESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +I   A     E ++  F  L+ E    + F+  SIT      AC    ++ +G+     
Sbjct: 358 MISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAH 417

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            I     + +  + G L D+  + G++  A  +V N    PD V W S++  C
Sbjct: 418 AIKAGFDSDLHVNSGIL-DMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 468


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 343/583 (58%), Gaps = 24/583 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALR------TALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           SLLS+ T   ++   + IHA   +       A+     T+ + +  +H  +        +
Sbjct: 420 SLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT--------K 471

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           ++  + + +  +WN  +           + + +F  M+E+G  +P+ +TF   L +C+ L
Sbjct: 472 LYESMVDRDLISWNAYLSG-LHDCGMYDRPLTIFYHMLEEG-FIPNMYTFISILGSCSCL 529

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
           F    G+Q HAHI K  L  + ++  +LI  YA C +L+ A+  F+ +  R L +W V+I
Sbjct: 530 FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVII 589

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q  + + AL  FR+MQ    +P+ +T     S C+ LA+L  G   H+ + +    
Sbjct: 590 TNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKS--- 646

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
             V+D+ V ++L+DMY KCG ++ A  +FE++ +RD  +WN+II G+A +G+   AL  F
Sbjct: 647 GHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAF 706

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            R++++E  SP+ +TF G+LSAC+H+G+V EG+++F+ M  ++ I+P ++H  C+VD+L 
Sbjct: 707 -RMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILG 765

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R G  DE    +  M +  +A+IW ++L A  K H ++VL E+ A ++ E +    S  Y
Sbjct: 766 RVGKFDELEDFIQKMQLSQNALIWETVLGAS-KMHNNLVLGEKAANKLFELQPEEESS-Y 823

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +LLS ++A+  RW+DV  VR LM+ KGV KEPGCS +E +G  H F + D SHPQ ++I+
Sbjct: 824 ILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIH 883

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             LD +D +L S  Y P  ++  + +  +  K+ +LR HSERLA+   +++      IR+
Sbjct: 884 LKLDELDRELASIQYVPK-TEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRI 942

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           FKNLR+C+DCH+V K IS I N EI+VRD  RFHHFK+G+CSC
Sbjct: 943 FKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 192/387 (49%), Gaps = 13/387 (3%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +SS+L      +S+   K IH   ++  + P  H   L  S +  +A      YA  V  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSH---LWVSLVNVYAKCRYSAYARLVLA 171

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++ + +  +W  LI+       A   +I LFQ M  +G ++P++ T    LKAC+   A 
Sbjct: 172 KMPDRDVVSWTALIQGLVAEGFAN-DSIYLFQEMQNEG-IMPNEFTLATGLKACSLCMAL 229

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA  FK GL+ D+++ ++L+  YA CG ++LA+K+F  M E++ V+WNV+++ +
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289

Query: 212 VQFGEFDSALKLF-RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G+    LKLF   M++  + + +T  ++   CA    L  G   H+ I++ C +   
Sbjct: 290 AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK-CGYE-- 346

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  +   L+DMY KCG    A  VF+++ K D+  W+++I      G++E ++K F  +
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
            + ++  PN  T   +LSA  + G +  G+      + +Y     +     LV +  + G
Sbjct: 407 RLGDTL-PNQYTICSLLSAATNTGNLQYGQS-IHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
            + +   L  +M +  D + W + L  
Sbjct: 465 CVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 185/389 (47%), Gaps = 16/389 (4%)

Query: 32  NHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADLDY-AF 87
           N  +L + L  C +   LKQ   IH+  ++           I   ++   S   L   A 
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNE---FIGCGLVDMYSKCGLAIDAI 369

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF  I+ P+   W+ LI  C        ++I LF  M   G+ LP+++T    L A   
Sbjct: 370 GVFKTIKKPDIVVWSALI-TCLDQQGQSEESIKLFHLM-RLGDTLPNQYTICSLLSAATN 427

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                 G+  HA ++K G  +DV ++N+L+  Y   G +    K++++M++R L+SWN  
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +      G +D  L +F  M +  F P+ YTF SI  +C+ L  +  G   HA+I++   
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIK--- 544

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           + L  +  V  +LIDMY KC  L+ A   F  +  RDL +W  II  +A   + E AL Y
Sbjct: 545 NQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNY 604

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F R + +E   PN  T  G LS C+    +  G+    ++    +++ +      LVD+ 
Sbjct: 605 F-RQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVG-SALVDMY 662

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           A+ G ++EA  L   + ++ D + W +++
Sbjct: 663 AKCGCMEEAEALFEAL-IRRDTIAWNTII 690



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 87/196 (44%), Gaps = 11/196 (5%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH- 76
           F   + EG   N  +L   L+ C S++ L   +Q+H+   ++        + + S ++  
Sbjct: 605 FRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSG---HVSDMFVGSALVDM 661

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    ++ A  +F  +   ++  WNT+I   A++     +A+  F+ M+++G + PD  
Sbjct: 662 YAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGN-KALTAFRMMLDEG-ISPDGV 719

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           TF   L AC++     +GK+    +++  G+   V     ++      G  D        
Sbjct: 720 TFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQK 779

Query: 196 M-LERSLVSWNVMIDA 210
           M L ++ + W  ++ A
Sbjct: 780 MQLSQNALIWETVLGA 795


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/604 (38%), Positives = 339/604 (56%), Gaps = 24/604 (3%)

Query: 21   FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTAL----PQQHKTLLIYSR 73
            F+  R  G   +  S++S+L+ C S+  +   +QIH + ++  L       +  L +Y+ 
Sbjct: 444  FHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAE 503

Query: 74   IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
                  +       +VF+ +   +  +WN+ I A A S  +  QAI  F  M++ G   P
Sbjct: 504  TDCMEEYQ------KVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAG-WKP 556

Query: 134  DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
            ++ TF   L A + L     G+Q HA I K  +  D  I N+L+ FY  C  ++    +F
Sbjct: 557  NRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIF 616

Query: 194  DNMLER-SLVSWNVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATL 251
              M ER   VSWN MI  ++  G    A+ L +  MQ     D +T  ++ SACA +ATL
Sbjct: 617  SRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATL 676

Query: 252  SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
              GM  HA  +R C   L  +V+V ++L+DMY KCG +D A + FE MP R++ SWNS+I
Sbjct: 677  ERGMEVHACAIRAC---LEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMI 733

Query: 312  LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
             G+A HG    ALK F ++       P+ +TFVGVLSAC+H G+V EG ++F  M   Y 
Sbjct: 734  SGYARHGHGGKALKLFTQMKQHGQL-PDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYE 792

Query: 372  ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEE 430
            + P +EH+ C+VDLL RAG++ +    +  MPM P+A+IWR++L ACC+ ++ +  L   
Sbjct: 793  LAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRR 852

Query: 431  VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
             AK +IE E  + +  YVLLS ++A+  +W DV   R  M +  V KE GCS + +    
Sbjct: 853  AAKMLIELE-PLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGV 911

Query: 491  HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
            H F AGD +HP+ ++IY  L  I  K++  GY P+ ++ A+ D   + K+  L  HSE+L
Sbjct: 912  HVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPE-TKYALYDLELENKEELLSYHSEKL 970

Query: 551  AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
            AIA  +L  +  +PIR+ KNLRVC DCH   K IS I N +II+RD  RFHHF  G CSC
Sbjct: 971  AIAF-VLTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSC 1029

Query: 611  MDYW 614
             DYW
Sbjct: 1030 QDYW 1033



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 204/426 (47%), Gaps = 31/426 (7%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSM--SQLK---QIHAQALRTALPQQHKTLL---IY 71
           +F    + G   NH ++ S+L  C+ +  + LK   +IH   L +  P     +L   + 
Sbjct: 127 LFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHG--LISKSPYASDMVLSNVLM 184

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF---QRMIEQ 128
           S   H +  A +D A RVF +I+   S +WN++I    R  DA   A  LF   QR   +
Sbjct: 185 SMYSHCS--ASIDDARRVFEEIKMKTSASWNSIISVYCRRGDA-ISAFKLFSSMQREATE 241

Query: 129 GNVLPDKHTF-PFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
            N  P+++TF      AC+ +    +  +Q  A I K   V D+Y+ ++L+  +A  G +
Sbjct: 242 LNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLI 301

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACA 246
           D A  +F+ M +R+ V+ N ++    +  + + A K+F+ M+ L E +  ++  + SA  
Sbjct: 302 DSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSAFT 361

Query: 247 GLATLS----LGMWAHAYILRHCDHSLVTDV--LVNNSLIDMYCKCGSLDIARQVFESMP 300
             + L      G   HAY++R+     + DV  L+ N+L+++Y KC ++D AR +F+ MP
Sbjct: 362 EFSNLKEGKRKGQEVHAYLIRNA----LVDVWILIGNALVNLYAKCNAIDNARSIFQLMP 417

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            +D  SWNSII G   + R E A+  F  +       P+  + +  LS+C   G +  G+
Sbjct: 418 SKDTVSWNSIISGLDHNERFEEAVACFHTM-RRNGMVPSKFSVISTLSSCASLGWIMLGQ 476

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                 I +  +   +     L+ L A    ++E   +   MP + D V W S + A   
Sbjct: 477 QIHGEGI-KCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP-EYDQVSWNSFIGALAT 534

Query: 421 KHASVV 426
             ASV+
Sbjct: 535 SEASVL 540



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 174/377 (46%), Gaps = 16/377 (4%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           Q+H Q  +T L          + +  F    +L  A ++F ++   N  +W+ L+   A+
Sbjct: 60  QLHLQIYKTGLTSD--VFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA--FSQGKQAHAHIFKRGLVS 168
           +     +A +LF+ +I  G +LP+ +    AL+AC  L       G + H  I K    S
Sbjct: 118 N-GMPDEACMLFRGIISAG-LLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYAS 175

Query: 169 DVYINNSLIHFYASC-GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           D+ ++N L+  Y+ C   +D A +VF+ +  ++  SWN +I  + + G+  SA KLF  M
Sbjct: 176 DMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSM 235

Query: 228 Q-----ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           Q     +   P+ YTF S+ +    L    L +     + R    S V D+ V ++L+  
Sbjct: 236 QREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQ-MLARIEKSSFVKDLYVGSALVSG 294

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL--VVEESFSPNS 340
           + + G +D A+ +FE M  R+  + N +++G A   + E A K F  +  +VE + S  +
Sbjct: 295 FARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYA 354

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +         N +    +G++    +I    +   +     LV+L A+   ID A  +  
Sbjct: 355 VLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQ 414

Query: 401 NMPMKPDAVIWRSLLDA 417
            MP K D V W S++  
Sbjct: 415 LMPSK-DTVSWNSIISG 430



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 140/289 (48%), Gaps = 22/289 (7%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H  I+K GL SDV+  N+L++ +   G+L  A K+FD M +++LVSW+ ++  + Q G
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 216 EFDSALKLFRR-MQILFEPDGYTFQSITSACAGLA--TLSLGMWAHAYILRHCDHSLVTD 272
             D A  LFR  +     P+ Y   S   AC  L    L LGM  H  I +       +D
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISK---SPYASD 176

Query: 273 VLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF---D 328
           ++++N L+ MY  C  S+D AR+VFE +  +   SWNSII  +   G A +A K F    
Sbjct: 177 MVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQ 236

Query: 329 RLVVEESFSPNSITFVGVLS-ACNHRGMVSEGRDYFDVM---INEYNITPVLEHYGCLVD 384
           R   E +  PN  TF  +++ AC+   +V  G    + M   I + +    L     LV 
Sbjct: 237 REATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVS 293

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
             AR G ID A  +   M  + +AV    L+    ++H      EE AK
Sbjct: 294 GFARYGLIDSAKMIFEQMDDR-NAVTMNGLMVGLARQHQ----GEEAAK 337



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
           AH   L+     L +DV   N+L++++ + G+L  A+++F+ MP+++L SW+ ++ G+A 
Sbjct: 58  AHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG--MVSEGRDYFDVMINE-YNIT 373
           +G  + A   F R ++     PN       L AC   G  M+  G +   ++    Y   
Sbjct: 118 NGMPDEACMLF-RGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASD 176

Query: 374 PVLEHYGCLVDLLAR-AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            VL +   L+ + +  + +ID+A  +   + MK  A  W S++   C++
Sbjct: 177 MVLSN--VLMSMYSHCSASIDDARRVFEEIKMKTSAS-WNSIISVYCRR 222


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/585 (37%), Positives = 337/585 (57%), Gaps = 40/585 (6%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYAFRVF 90
           S+L    +  ++S  K +H+ A++++  ++     TLL +YS+        DLD A RVF
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC------GDLDGALRVF 171

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   N  +W ++I    R       AI+L Q+M ++G V  D       L ACA   +
Sbjct: 172 EKMGERNVVSWTSMIAGYTRD-GWSDGAIILLQQMEKEG-VKLDVVAITSILHACARSGS 229

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GK  H +I    + S++++ N+L+  YA CG ++ AN VF  M+ + ++SWN M+  
Sbjct: 230 LDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV-- 287

Query: 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
               GE               +PD  T   I  ACA L+ L  G   H YILR+      
Sbjct: 288 ----GEL--------------KPDSRTMACILPACASLSALERGKEIHGYILRN---GYS 326

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           +D  V N+L+D+Y KCG L +AR +F+ +P +DL SW  +I G+ +HG    A+  F+ +
Sbjct: 327 SDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 386

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ ++F+ +L AC+H G++ +G  +F +M N++NI P LEHY C+VDLL+R G
Sbjct: 387 R-DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTG 445

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
           N+ +A   +  +P+ PDA IW +LL   C+ +  + L+E+VA++V E E    +G YVLL
Sbjct: 446 NLSKAYKFIETLPIAPDATIWGALL-CGCRIYHDIELAEKVAERVFELEPE-NTGYYVLL 503

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD-TSHPQTKQIYGF 509
           + +YA A +W +V  +R+ +  KG+ K PGCS IEI G  + F +G+ +SHP +K+I   
Sbjct: 504 ANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESL 563

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L  +  K+K  GY P  ++ A+++  +  K+ +L  HSE+LA+A G+L L P   IRV K
Sbjct: 564 LKKMRRKMKEEGYFPK-TKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTK 622

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCHE+ K +S+    EI++RD  RFHHFKDG CSC  +W
Sbjct: 623 NLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 164/391 (41%), Gaps = 81/391 (20%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------- 129
           +A+  DL    RVF  +E  N + WN ++   A+  D K ++I LF+ M+E+G       
Sbjct: 6   YATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK-ESICLFKIMVEKGIEGKRSE 64

Query: 130 -------------------------------------------NVLPDKHTFPFALKACA 146
                                                       +  D  T    L  CA
Sbjct: 65  SASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 124

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
                S GK  H+   K      +  +N+L+  Y+ CG LD A +VF+ M ER++VSW  
Sbjct: 125 KSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 184

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  + + G  D A+ L ++M+    + D     SI  ACA   +L  G   H YI    
Sbjct: 185 MIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA-- 242

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            +++ +++ V N+L+DMY KCGS++ A  VF +M  +D+ SWN+++              
Sbjct: 243 -NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV-------------- 287

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVD 384
                       P+S T   +L AC     +  G++    ++ N Y+    + +   LVD
Sbjct: 288 --------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVD 337

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L  + G +  A  L   +P K D V W  ++
Sbjct: 338 LYVKCGVLGLARLLFDMIPSK-DLVSWTVMI 367



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 132/292 (45%), Gaps = 58/292 (19%)

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------- 227
           L+ FYA+CG L    +VFD M ++++  WN M+  + + G+F  ++ LF+ M        
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 228 -----------------------------------------QILF---EPDGYTFQSITS 243
                                                    Q+++   + D  T  S+  
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
            CA   TLSLG   H+  ++    S    +  +N+L+DMY KCG LD A +VFE M +R+
Sbjct: 122 GCAKSGTLSLGKAVHSLAIK---SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 178

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SW S+I G+   G ++ A+    ++  +E    + +    +L AC   G +  G+D  
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVH 237

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           D  I   N+   L     L+D+ A+ G+++ A  + S M +K D + W +++
Sbjct: 238 DY-IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMV 287


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 331/583 (56%), Gaps = 15/583 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS L + +    +SQ ++I A+ + +       +++  + I  ++    L+ A +VF ++
Sbjct: 167 SSALYACSVVGDISQGREIEARTVASGYASD--SIVQNALINMYSKCGSLESARKVFDRL 224

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +N +   WNT+I   A+   A  QA+ LFQRM    +  P+  TF   L AC  L    Q
Sbjct: 225 KNRDVIAWNTMISGYAKQ-GAATQALELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQ 282

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGH-LDLANKVFDNMLERSLVSWNVMIDAFV 212
           G+  H  + + G  SD+ I N L++ Y  C   L+ A +VF+ +  R +++WN++I A+V
Sbjct: 283 GRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYV 342

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q+G+   AL +F++MQ+    P+  T  ++ SACA L     G   HA I          
Sbjct: 343 QYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALI---ASGRCKA 399

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV++ NSL++MY +CGSLD    VF ++  + L SW+++I  +A HG +   L++F  L+
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +E  + + +T V  LSAC+H GM+ EG   F  M+ ++ + P   H+ C+VDLL+RAG 
Sbjct: 460 -QEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGR 518

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++ A +L+ +MP  PDAV W SLL  C K H     +  VA ++ E E         LLS
Sbjct: 519 LEAAENLIHDMPFLPDAVAWTSLLSGC-KLHNDTKRAARVADKLFELESEDEHSTVTLLS 577

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            VYA A RW+DV   RK    +   K PGCS IEI+   HEF AGD SHP+ + I   + 
Sbjct: 578 NVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIK 634

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + +++K  GY PD  +  + +  ++ K+  L  HSE+LAIA G+++  PG P+ + KNL
Sbjct: 635 RLSKQMKDAGYVPDM-RMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNL 693

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R C DCH   K ISRI   +I+VRD  RFHHF++GSCSC DYW
Sbjct: 694 RACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 212/399 (53%), Gaps = 17/399 (4%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           EG   + +  + ++  C S   LKQ   +HA  L T L  +   +L  + I  +A   DL
Sbjct: 52  EGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQL-LEFDIILGTALITMYARCRDL 110

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--NVLPDKHTFPFA 141
           + A + F ++      TWN LI   +R+ D +  A+ ++Q M+ +    + PD  TF  A
Sbjct: 111 ELARKTFDEMGKKTLVTWNALIAGYSRNGDHRG-ALKIYQDMVSKSPEGMKPDAITFSSA 169

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L AC+ +   SQG++  A     G  SD  + N+LI+ Y+ CG L+ A KVFD +  R +
Sbjct: 170 LYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAY 260
           ++WN MI  + + G    AL+LF+RM     +P+  TF  + +AC  L  L  G   H  
Sbjct: 230 IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRK 289

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           +    +H   +D+++ N L++MY KC  SL+ ARQVFE +  RD+ +WN +I+ +  +G+
Sbjct: 290 VK---EHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQ 346

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITPVLEH 378
           A+ AL  F ++ + E+ +PN IT   VLSAC   G   +G+    ++ +       VLE+
Sbjct: 347 AKDALDIFKQMQL-ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              L+++  R G++D+ + + + +  K   V W +L+ A
Sbjct: 406 --SLMNMYNRCGSLDDTVGVFAAIRDKS-LVSWSTLIAA 441



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 161/280 (57%), Gaps = 11/280 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF+ IE+PNS +W  ++ A AR+   + +A+  ++RM+ +G + PD   F  A+  C
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYR-EALGYYRRMVLEG-LRPDGAMFVVAIGVC 68

Query: 146 AYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           +      QG+  HA I +  L+  D+ +  +LI  YA C  L+LA K FD M +++LV+W
Sbjct: 69  SSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTW 128

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL----FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           N +I  + + G+   ALK+++ M        +PD  TF S   AC+ +  +S G    A 
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEA- 187

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
             R       +D +V N+LI+MY KCGSL+ AR+VF+ +  RD+ +WN++I G+A  G A
Sbjct: 188 --RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
             AL+ F R+   +   PN +TF+G+L+AC +   + +GR
Sbjct: 246 TQALELFQRMGPNDP-KPNVVTFIGLLTACTNLEDLEQGR 284



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 130/251 (51%), Gaps = 9/251 (3%)

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYT 237
            Y  CG +  A  VF  +   + VSW +++ AF + G +  AL  +RRM +    PDG  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
           F      C+    L  G   HA IL      L  D+++  +LI MY +C  L++AR+ F+
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILE--TQLLEFDIILGTALITMYARCRDLELARKTFD 118

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE--ESFSPNSITFVGVLSACNHRGM 355
            M K+ L +WN++I G++ +G    ALK +  +V +  E   P++ITF   L AC+  G 
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178

Query: 356 VSEGRDY-FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +S+GR+     + + Y    ++++   L+++ ++ G+++ A  +   +  + D + W ++
Sbjct: 179 ISQGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLKNR-DVIAWNTM 235

Query: 415 LDACCKKHASV 425
           +    K+ A+ 
Sbjct: 236 ISGYAKQGAAT 246


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 335/587 (57%), Gaps = 16/587 (2%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  ++L+ L  C    QL   K++H  + R     QH   L  + I+ +A    L+ A +
Sbjct: 350 NEVTILNVLPACLDKLQLRSLKELHGYSFRHCF--QH-VELSNAFILAYAKCGALNSAEK 406

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF+ I +    +WN LI   A++ D +    +LFQ M   G   PD  T    L ACA+L
Sbjct: 407 VFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQ-MTYSGQQ-PDWFTISSLLLACAHL 464

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +   GK+ H ++ + GL +D ++  SL+  Y  CG    A  +FD M +++LVSWN MI
Sbjct: 465 KSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMI 524

Query: 209 DAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G    +L LFR+ +    +       S+  AC+ L+ L LG  AH Y+L+    
Sbjct: 525 SGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQ- 583

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
               D  V  S+IDMY K G +  +R+VF+ +  +++ SWN+II+   +HG  + A++ +
Sbjct: 584 --TEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELY 641

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           +R+  +    P+  T++G+L AC H G+V EG  YF  M N   I P LEHY CL+D+LA
Sbjct: 642 ERMK-KVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLA 700

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +D+AL LV+ MP + D  IW SLL +C +   ++ + E+VAK+++E E       Y
Sbjct: 701 RAGRLDDALRLVNEMPEEADNRIWSSLLRSC-RTFGALEIGEKVAKKLLELEPDKAEN-Y 758

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA   +W+ V  VR++M + G+ K+ GCS IE+ G  + F  GD+  P++ +I 
Sbjct: 759 VLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIR 818

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
                ++E++   GY P+ S + + +  ++ K   LR HSE+LAI+ G+L    G  +R+
Sbjct: 819 VIWRRLEERISEIGYKPNTS-SVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRI 877

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +KNLR+C DCH   KLIS+    EI+VRD  RFHHF+DG CSC DYW
Sbjct: 878 YKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 135/267 (50%), Gaps = 11/267 (4%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  +E  N   WN L+    R+       + +F  ++   +  PD  TFP  +KAC  +
Sbjct: 101 VFDNMETKNLIQWNALVSGYTRN-GLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGI 159

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G+  H  + K GLV DV++ N+L+  Y  CG +D A KVFD M E +LVSWN MI
Sbjct: 160 LDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMI 219

Query: 209 DAFVQFG----EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            AF + G     FD  +++     +L  PD  T  +I   CAG   + +GM  H   ++ 
Sbjct: 220 CAFSENGFSRDSFDLLMEMLGEEGLL--PDVVTVVTILPVCAGEGEVDIGMGIHGLAVK- 276

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L  +V+VNN+++ MY KCG L+ A+  F     +++ SWN++I  F+L G    A 
Sbjct: 277 --LGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAF 334

Query: 325 KYFDRLVVE-ESFSPNSITFVGVLSAC 350
                + ++ E    N +T + VL AC
Sbjct: 335 NLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 175/369 (47%), Gaps = 14/369 (3%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           IH  A++  L ++   ++  + +  ++    L+ A   F +  N N  +WNT+I A +  
Sbjct: 270 IHGLAVKLGLSEE--VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 112 VDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
            D   +A  L Q M  QG  +  ++ T    L AC         K+ H + F R     V
Sbjct: 328 GDVN-EAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSF-RHCFQHV 385

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
            ++N+ I  YA CG L+ A KVF  + ++++ SWN +I    Q G+   AL L  +M   
Sbjct: 386 ELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYS 445

Query: 231 F-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             +PD +T  S+  ACA L +L  G   H Y+LR   + L TD  V  SL+  Y  CG  
Sbjct: 446 GQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLR---NGLETDFFVGTSLLSHYIHCGKA 502

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
             AR +F+ M  ++L SWN++I G++ +G    +L  F R  + E    + I  V V  A
Sbjct: 503 SSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALF-RKSLSEGIQSHEIAIVSVFGA 561

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGC-LVDLLARAGNIDEALHLVSNMPMKPDA 408
           C+    +  G++    ++            GC ++D+ A++G I E+  +   +  K + 
Sbjct: 562 CSQLSALRLGKEAHGYVLKALQTEDAF--VGCSIIDMYAKSGCIKESRKVFDGLKDK-NV 618

Query: 409 VIWRSLLDA 417
             W +++ A
Sbjct: 619 ASWNAIIVA 627



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI-NNSLIHFYASCGHLDLAN 190
           L  K      L+AC        G++ H  +       + Y+ N  LI  YA CG    + 
Sbjct: 40  LQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSR 99

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGL 248
            VFDNM  ++L+ WN ++  + + G +   +K+F  +     F+PD +TF S+  AC G+
Sbjct: 100 LVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGI 159

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             + LG   H  +++     LV DV V N+L+ MY KCG++D A +VF+ MP+ +L SWN
Sbjct: 160 LDVRLGEVIHGMVIKM---GLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWN 216

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+I  F+ +G +  +      ++ EE   P+ +T V +L  C   G V  G     + + 
Sbjct: 217 SMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV- 275

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEA-LHLVSNMPMKPDAVIWRSLLDA 417
           +  ++  +     +V + ++ G ++EA +  V N     + V W +++ A
Sbjct: 276 KLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKN--NNKNVVSWNTMISA 323



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 15/291 (5%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     +D A +VF  +   N  +WN++I A + +  ++    +L + + E+G +LPD  
Sbjct: 191 YGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEG-LLPDVV 249

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L  CA       G   H    K GL  +V +NN++++ Y+ CG+L+ A   F   
Sbjct: 250 TVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKN 309

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSL 253
             +++VSWN MI AF   G+ + A  L + MQI  E    +  T  ++  AC     L  
Sbjct: 310 NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRS 369

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
               H Y  RHC       V ++N+ I  Y KCG+L+ A +VF  +  + ++SWN++I G
Sbjct: 370 LKELHGYSFRHC----FQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGG 425

Query: 314 FALHGRAEAALKYFDRLVVEESFS---PNSITFVGVLSACNHRGMVSEGRD 361
            A +G    AL     L+ + ++S   P+  T   +L AC H   +  G++
Sbjct: 426 HAQNGDPRKAL----HLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/531 (39%), Positives = 321/531 (60%), Gaps = 24/531 (4%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF-- 151
           +P +F++NT IR+ A     +P  A+ L++ M+      P+ +T+P  L ACA L     
Sbjct: 54  HPTTFSYNTTIRSLAHG--PRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHP 111

Query: 152 ----SQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSW 204
               + G   HA +F+RGL S D +I+ S++ FYA+ G L  A +VFD     +R L  W
Sbjct: 112 PREAAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALW 171

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           N ++ A++  G +   L+LFR+M      D  T  ++ SAC+ L  L  G WAHAY  R 
Sbjct: 172 NSLLHAYLSQGLYTHVLRLFRQM---VATDEVTLLAVVSACSHLGALDTGRWAHAYHART 228

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
           C +   T   +  +L++MY +CG ++ A  VF  M  +D+ +W+ +I G A++G    AL
Sbjct: 229 CRN---TTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDAL 285

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           K F  +       P+SIT   VLSAC+H GMV EG+ +   M  EY++ P +EHYGC+VD
Sbjct: 286 KLFAEMK-NIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVD 344

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL RAG ++EAL L+  +P K D  +W +LL AC + H +V + +  A ++++ +    +
Sbjct: 345 LLGRAGQLEEALALIETVPFKADVALWGALLVAC-RAHKNVDMGQMAAMEILKLDPHH-A 402

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G  V LS  YA+A +W+ V  VR  M +  + K PG S +E+DG+ +EF +GD SHPQ+ 
Sbjct: 403 GACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSD 462

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           +IY  LD + + L  +G+ P   + A  +DE D  K+  +  HSE+LA+ALG+++ + G 
Sbjct: 463 RIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEED--KEVCISQHSEKLALALGLISTRRGA 520

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLR+C+DCH V K++S +++  I+VRDR RFHHFK+GSCSC+DYW
Sbjct: 521 VIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 338/581 (58%), Gaps = 17/581 (2%)

Query: 43  CKSMSQLKQIHAQALRTALPQ--QHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
           C ++ + ++ HA+ ++  L +  +H   L+ +  +       + YA  +F  +++P +F 
Sbjct: 41  CANLDEARKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFD 100

Query: 101 WNTLIRACARSVDAKPQA----IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           +NTL+R    +     +     + LF  M++ G V PD +TFPF  KACA L A  +G+Q
Sbjct: 101 YNTLMRGYVAAAGGGGRDPAAALRLFVDMVDDG-VEPDSYTFPFVFKACAQLGALQEGRQ 159

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQF 214
              H+ K G   D +  NSLI FY  CG  DLA + F+ M   E++  SW+ ++ A+ + 
Sbjct: 160 LQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRA 219

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G +   ++ F  M +  + PD  +  S  SACA L    +G   H  +LR+   +   + 
Sbjct: 220 GRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRN---TARLNT 276

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            ++ SL+DMY KCG ++ A  VF++M  ++  ++++++ G ALHG    AL+ FD +V  
Sbjct: 277 FMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMV-R 335

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           E   P++  +VGVL+AC+  G++ EG   FD M  E+ +TP  +HYGC+VDL+ARAG +D
Sbjct: 336 EGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLD 395

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           +A  L+ +MP  P    WRSLL+A C+ H ++ L+E  A Q +E  G   +G Y++LS +
Sbjct: 396 DARALIGSMPTGPTDTAWRSLLNA-CRIHGNLELAER-ALQELERLGATNAGDYIILSDM 453

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           +A A   +     R    D+G+ + PG S++E+ G  H F + D SHP+   IY  L  +
Sbjct: 454 HARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQM 513

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
           + +L+  GYTPD S+ A+ D  ++ K+  +  HS++LA+A G+L+   G P+RV  NLR+
Sbjct: 514 EWQLRFEGYTPDTSELAL-DAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRM 572

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K+CH  + LIS IF  EI+VRDR RFH FK G+CSC +YW
Sbjct: 573 SKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCRNYW 613


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 342/592 (57%), Gaps = 16/592 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFAD-LD 84
           E  F+ + +LL++  + +++   +++HA  ++T  LP  +    + +R++ F    D L+
Sbjct: 49  EMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATY----LRTRLLIFYGKCDCLE 104

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A +V  ++   N  +W  +I   +++  +  +A+ +F  M+ + +  P++ TF   L +
Sbjct: 105 DARKVLDEMPEKNVVSWTAMISRYSQTGHSS-EALTVFAEMM-RSDGKPNEFTFATVLTS 162

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C        GKQ H  I K    S +++ +SL+  YA  G +  A ++F+ + ER +VS 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
             +I  + Q G  + AL++F R+      P+  T+ S+ +A +GLA L  G  AH ++LR
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                L    ++ NSLIDMY KCG+L  AR++F++MP+R   SWN++++G++ HG     
Sbjct: 283 R---ELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREV 339

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NEYNITPVLEHYGCL 382
           L+ F  +  E+   P+++T + VLS C+H  M   G + FD M+  EY   P  EHYGC+
Sbjct: 340 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCI 399

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VD+L RAG IDEA   +  MP KP A +  SLL AC + H SV + E V +++IE E   
Sbjct: 400 VDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGAC-RVHLSVDIGESVGRRLIEIEPE- 457

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G YV+LS +YASA RW DV  VR +M  K VTKEPG S I+ +   H F A D +HP+
Sbjct: 458 NAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPR 517

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            +++   +  I  K+K  GY PD S   + D  ++ K+  L  HSE+LA+  G++    G
Sbjct: 518 REEVLAKMKEISIKMKQAGYVPDLS-CVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEG 576

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +PIRVFKNLR+C DCH   K+ S++F  E+ +RD+ RFH   DG CSC DYW
Sbjct: 577 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/598 (38%), Positives = 341/598 (57%), Gaps = 47/598 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S+L+   E  ++ + K I+ Q     +P++   +   S I+ F     +  A ++F ++
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQ-----MPER-SIIASNSMIVLFGMRGLVVEACKLFDEM 201

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +  TW+ LI AC +  +   +AI  F  M + G V+ D+     AL ACA L   + 
Sbjct: 202 LEKDMVTWSALI-ACFQQNEMYEEAIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNM 259

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK---------------------- 191
           GK  H+   K G  S + + N+LI+ Y+ CG + +A K                      
Sbjct: 260 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 319

Query: 192 ---------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
                    +FD+M E+ +VSW+ MI  + Q   FD  L LF+ MQ+  F+PD  T  S+
Sbjct: 320 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 379

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            SACA LA L  G W HAYI R+    L  +V++  +LIDMY KCG ++ A +VF  M +
Sbjct: 380 ISACARLAALEQGKWVHAYIKRN---GLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 436

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           + +++WN++ILG A++G  E++L  F  +  +   +PN ITF+GVL AC H G+V EG+ 
Sbjct: 437 KGISTWNALILGLAMNGLVESSLDMFSNMK-KCHVTPNEITFMGVLGACRHMGLVDEGQH 495

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +F  MI+++ I P ++HYGC+VDLL RAG + EA  L++ MPM PD   W +LL A CKK
Sbjct: 496 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA-CKK 554

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H    +   V +++IE +     G +VLLS +YAS  +W+DV  +R +MT   V K PGC
Sbjct: 555 HGDSEMGRRVGRKLIELQPD-HDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 613

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S IE +G+ HEF AGD +HP    I   L  +  KLK  GYTPD ++  ++D  ++ K+S
Sbjct: 614 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINE-VLLDVDEEEKES 672

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           +L  HSE+LAIA G++N+ P  PIR+ KNLR+C DCH   KLIS+ F  +I+   R +
Sbjct: 673 TLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVFLFRGQ 730



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 192/442 (43%), Gaps = 107/442 (24%)

Query: 72  SRIIHFAS---FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           SR+I F++   F  +DY  R+F  IEN N F WN +IRA  ++ ++   A  L++ M+  
Sbjct: 14  SRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQT-NSPHFAFTLYKSMLS- 71

Query: 129 GNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
            N L  D +T+P  ++AC+   +  + KQ H H+ K G  SDVY+ N+LI+ ++ C ++ 
Sbjct: 72  -NYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMT 130

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-----------ILF----- 231
            A +VF+       VSWN ++  +++ G  + A  ++ +M            +LF     
Sbjct: 131 DACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGL 190

Query: 232 ------------EPDGYTFQSI--------------------------------TSACAG 247
                       E D  T+ ++                                 SA + 
Sbjct: 191 VVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSA 250

Query: 248 LATL---SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ---------- 294
            A L   ++G   H+  L+    S +    + N+LI MY KCG + +AR+          
Sbjct: 251 CANLLVVNMGKLIHSLSLKIGTESYIN---LQNALIYMYSKCGDIMVARKLFDEAYLLDL 307

Query: 295 ---------------------VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
                                +F+SMP++D+ SW+S+I G+A +   +  L  F  + + 
Sbjct: 308 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM- 366

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
             F P+  T V V+SAC     + +G+ +    I    +T  +     L+D+  + G ++
Sbjct: 367 SGFKPDETTLVSVISACARLAALEQGK-WVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 425

Query: 394 EALHLVSNMPMKPDAVIWRSLL 415
            AL +   M  K  +  W +L+
Sbjct: 426 TALEVFYGMIEKGIST-WNALI 446


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 321/547 (58%), Gaps = 14/547 (2%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-N 130
           S I  +     ++   R+F ++   N  +W ++I    +   ++ +A+ LF++M+  G  
Sbjct: 140 SMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSE-EALGLFRQMMGCGVE 198

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           V P   T+   + ACA   A  QG Q HAH+FK G   D YI+ +LI FYA+C  ++ + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAG 247
           +VF   L  ++V W  ++  +    + + ALK+F  M    +L  P+  +F S  ++C G
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVL--PNQSSFTSALNSCCG 316

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L  G   H   ++     L TDV V NSLI MY +CG+L+    +F+ + K+++ SW
Sbjct: 317 LEALDWGREIHTAAVKL---GLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 373

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           NS+I+G A HG    AL +F+++V      P+ ITF G+LSAC+H GM  +GR  F    
Sbjct: 374 NSVIVGCAQHGCGMWALAFFNQMV-RSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFS 432

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
              +    L+HY C+VD+L R+G ++EA  L+ NMP+K ++++W  LL AC   H+ + +
Sbjct: 433 ENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSAC-TMHSKLEV 491

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
           +E  AK +I+ E   CS  YVLLS +YASA RW+DV  +R+ M  +G+TK+PG S I I 
Sbjct: 492 AERAAKCIIDLEPH-CSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIK 550

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
           G  +EF +GD SHP + +IY  L+ +  KLK  GY PD  + A+ D  D+ K+  L  HS
Sbjct: 551 GWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPD-QRFALHDVEDEQKEVMLSYHS 609

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLAI  G+++   G  I V KNLRVC DCH   KLI++I   +IIVRD  RFHHF DG 
Sbjct: 610 ERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGR 669

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 670 CSCGDYW 676



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 166/350 (47%), Gaps = 19/350 (5%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A     D+A ++FY++   +  +WN++I+ C    D     + + +++ ++   +P
Sbjct: 49  ITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCAD-----LTMARKLFDE---MP 100

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++    +      +L  F + + A   +F +    D+   NS+I+ Y   G ++   ++F
Sbjct: 101 ERSVVSWTTMINGFL-QFGKIEVAEG-LFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLF 158

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLAT 250
             M  R+++SW  MI    Q G  + AL LFR+M    +  +P   T+  + +ACA  + 
Sbjct: 159 QEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASA 218

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G+  HA++ +   +S   D  ++ +LI  Y  C  ++ + +VF      ++  W ++
Sbjct: 219 LYQGVQIHAHVFK-LGYSF--DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTAL 275

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           + G+ L+ + E ALK F  + + E   PN  +F   L++C     +  GR+     +   
Sbjct: 276 VTGYGLNCKHEDALKVFGEM-MREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 334

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             T V      L+ +  R GN+++ + +   +  K + V W S++  C +
Sbjct: 335 LETDVFVG-NSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQ 382



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 56/322 (17%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD + +   +   A  + F    Q    +F    V DV   NS+I     C  L +A K
Sbjct: 39  FPDVYLYTMMITGYARNYRFDHALQ----LFYEMPVKDVVSWNSMIKGCFDCADLTMARK 94

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251
           +FD M ERS+VSW  MI+ F+QFG+ + A  LF +M                        
Sbjct: 95  LFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF---------------------- 132

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                               D+   NS+I  YC  G ++   ++F+ MP R++ SW S+I
Sbjct: 133 -------------------RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMI 173

Query: 312 LGFALHGRAEAALKYFDRLV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
            G   HGR+E AL  F +++       P S T+  V++AC +   + +G     +  + +
Sbjct: 174 GGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG---VQIHAHVF 230

Query: 371 NITPVLEHY--GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA----CCKKHAS 424
            +    + Y    L+   A    ++++L  V +  +  + VIW +L+      C  + A 
Sbjct: 231 KLGYSFDAYISAALITFYANCKQMEDSLR-VFHGKLHMNVVIWTALVTGYGLNCKHEDAL 289

Query: 425 VVLSEEVAKQVIESEGGICSGV 446
            V  E + + V+ ++    S +
Sbjct: 290 KVFGEMMREGVLPNQSSFTSAL 311



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
           +D A  VFD +    +  + +MI  + +   FD AL+LF  M +    D  ++ S+   C
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV---KDVVSWNSMIKGC 83

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
              A L++         +  D      V+   ++I+ + + G +++A  +F  MP RD+ 
Sbjct: 84  FDCADLTMAR-------KLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 136

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +WNS+I G+  +GR E  L+ F     +E    N I++  ++   +  G   E    F  
Sbjct: 137 AWNSMIYGYCCNGRVEDGLRLF-----QEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 191

Query: 366 MIN-EYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           M+     + P    Y C++   A A  + + + +
Sbjct: 192 MMGCGVEVKPTSSTYCCVITACANASALYQGVQI 225


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 322/576 (55%), Gaps = 47/576 (8%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A+   ++YA  VF ++   +  TWNT+I    R      +A  LF+ M +  NV+PD+ 
Sbjct: 159 YAACGRINYARNVFDEMSQRDVVTWNTMIERYCR-FGLLDEAFKLFEEM-KDSNVMPDEM 216

Query: 137 TFPFALKACA-----------YLFAFSQGKQAHAHI--------------------FKRG 165
                + AC            Y F      +   H+                    F++ 
Sbjct: 217 ILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKM 276

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
            V +++++ +++  Y+  G LD A  +FD    + LV W  MI A+ +      AL++F 
Sbjct: 277 SVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFE 336

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            M     +PD  T  S+ SAC  L TL    W H Y   H +  L + + ++N+LI+MY 
Sbjct: 337 EMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYT--HLN-GLESVLPIDNALINMYA 393

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG LD AR VFE MP R++ SW+S+I  FA+HG A  +L  F ++  +E+  PN +TFV
Sbjct: 394 KCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMK-QENVEPNEVTFV 452

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVL  C+H G+V EG+  F  M +EYNITP +EHYGC+VDL  RA  + EAL ++ +MPM
Sbjct: 453 GVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPM 512

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
            P+ VIW SL+ A C+ H  + L E  AK++++ E     G  VL+S +YA   RW+ V 
Sbjct: 513 APNVVIWGSLMSA-CRVHGELELGELAAKRILKLEPD-HDGALVLMSNIYAREYRWDYVR 570

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
           ++R +M  K V KE G S I+++G +HEF  GD  H Q+ +IY  L  +  KLK  GY P
Sbjct: 571 IIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVP 630

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP------IRVFKNLRVCKDCH 578
           D   + +VD  ++ K+  +  HSE+LA+  G++N +          IR+ KNLRVC+DCH
Sbjct: 631 D-GGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCH 689

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              KL+S+++ +EIIVRDR RFH +KDG CSC DYW
Sbjct: 690 AFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 202/414 (48%), Gaps = 37/414 (8%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +++L  L+ CKS++ +KQ+HA  LRT +   HK       +   +S  +L YA  +F  I
Sbjct: 16  NTILEKLSFCKSLNHIKQLHAHILRTVI--NHKLNSFLFNLSFSSSSINLSYALNLFSSI 73

Query: 94  EN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
              P S  +N+L+R  +RS   +P+A +LF + I       D+ +FP  LKA + + A  
Sbjct: 74  SPLPESIVFNSLLRDLSRS--GEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALF 131

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           +G + H   FK   +SD ++   L+  YA+CG ++ A  VFD M +R +V+WN MI+ + 
Sbjct: 132 EGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYC 191

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-------H 264
           +FG  D A KLF  M+     PD     +I SAC     +      + +++        H
Sbjct: 192 RFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTH 251

Query: 265 CDHSLVT---------------------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
              +LVT                     ++ V+ +++  Y K G LD AR +F+    +D
Sbjct: 252 LLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKD 311

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           L  W ++I  +A     + AL+ F+ +       P+ +T + V+SAC + G + + + + 
Sbjct: 312 LVCWTTMISAYAESDHPQEALRVFEEMCC-SGIKPDVVTMLSVISACVNLGTLDKAK-WV 369

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               +   +  VL     L+++ A+ G +D A  +   MP + + V W S+++A
Sbjct: 370 HRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINA 422


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 313/546 (57%), Gaps = 16/546 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +A+   +  A +VF  + +       WN +I   A++     +A+ LF RM  +   +P 
Sbjct: 319 YATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA-GMDEEALRLFARMEAEAGFVPC 377

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T    L ACA   AF+  +  H ++ KRG+  + ++ N+L+  YA  G  D+A ++F 
Sbjct: 378 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 437

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAGLAT 250
            +    +VSWN +I   V  G    A +L R MQ L E    P+  T  ++   CA LA 
Sbjct: 438 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 497

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
            + G   H Y +RH   +L TDV V ++L+DMY KCG L ++R VF+ +P+R+  +WN +
Sbjct: 498 PARGKEIHGYAVRH---ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 554

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+ + +HG    A   FDR+       PN +TF+  L+AC+H GMV  G   F  M  ++
Sbjct: 555 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 614

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKKHASVVLSE 429
            + P  +   C+VD+L RAG +DEA  +V++M      V  W ++L A C+ H +V L  
Sbjct: 615 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA-CRLHRNVHLG- 672

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
           E+A + +       +  YVLL  +Y++A +W     VR  M  +GV KEPGCS IE+DG 
Sbjct: 673 EIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGA 732

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSE 548
            H F AG+++HP +++++  ++ +  ++ +RGYTPD S   ++ ++DDG K + LR HSE
Sbjct: 733 IHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTS--CVLHDMDDGDKAAVLRCHSE 790

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA G+L   PG  IRV KNLRVC DCHE  K +S++   EI++RD  RFHHF++G C
Sbjct: 791 KLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQC 850

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 851 SCGDYW 856



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 205/446 (45%), Gaps = 42/446 (9%)

Query: 32  NHSSL---LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           +HS+L   + S    +     + IHA ALR  L  +    +  + +  +A    L  A  
Sbjct: 58  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 117

Query: 89  VFYQIENP--NSFTWNTLIRACARSVDAKPQAIVLFQR---------MIEQGNVLPDKHT 137
           VF  I +   ++ ++N+LI            A+ LF+R          +  G       T
Sbjct: 118 VFGSISDSAHDAVSFNSLI-----------SALCLFRRWDHALAALRAMLAGGHPLTSFT 166

Query: 138 FPFALKACAYLFAFSQ----GKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANK 191
               L+A ++L A +     G++AHA   K GL+     +  N+L+  YA  G +  A +
Sbjct: 167 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 226

Query: 192 VFDNML--ERSLVSWNVMIDAFVQFGEFDSALK-LFRRMQILFEPDGYTFQSITSACAGL 248
           +F         +V+WN M+   VQ G FD A++ L+  + +   PDG TF S   AC+ L
Sbjct: 227 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 286

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTS 306
             L +G   HAY+++  D  L  +  V ++L+DMY     +  ARQVF+ +P   + L  
Sbjct: 287 ELLDVGREMHAYVIK--DDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 344

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G+A  G  E AL+ F R+  E  F P   T   VL AC  R     G++     
Sbjct: 345 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA-RSEAFAGKEAVHGY 403

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
           + +  +         L+D+ AR G  D A  + + + + PD V W +L+  C  +   V 
Sbjct: 404 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQ-GHVA 461

Query: 427 LSEEVAKQVIE-SEGGICSGVYVLLS 451
            + ++A+++ +  EGG+      L++
Sbjct: 462 DAFQLAREMQQLEEGGVVPNAITLMT 487


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 338/602 (56%), Gaps = 19/602 (3%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           S +  N N  E ++    +LL S T  +S+ Q  Q+HA  L+  L       L+   +I+
Sbjct: 12  SQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGL---QTIPLVSHNLIN 68

Query: 77  FASFADLD-YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
             S   L  ++ +VF +    +S TW+++I A A++ +A   A+  F+RM+  G V PD 
Sbjct: 69  LYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQN-EAPLLALQFFRRMLNDG-VRPDD 126

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           H +P A KAC +L     GK  H    K G   DV++ +SL+  YA CG +  A  +FD 
Sbjct: 127 HIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDE 186

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           M ER++VSW+ MI  + Q  +   AL LF++  I   + + +TF S+   C+    L LG
Sbjct: 187 MPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG 246

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H   L+    S  +   V ++LI +Y KCG ++ A QVF+ +P R+L  WNS+++  
Sbjct: 247 KLIHGLCLKM---SFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIAC 303

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A H   +     F+ +       PN I+F+ VL AC+H G+V +GR+YF +M  +Y I P
Sbjct: 304 AQHAHTQRVFGLFEEMG-NVGMKPNFISFLSVLYACSHAGLVEKGREYFSLM-RDYGIEP 361

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             EHY  LVDLL RAG + EA+ ++  MPM+P   +W +LL  C + H    ++  VA +
Sbjct: 362 ETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGC-RIHKDTEMAAFVADR 420

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           ++E +    SG++VLLS  YA+A R+ +   +RK++ D+GV KE G S +E     H F 
Sbjct: 421 ILEMDSS-SSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFT 479

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG--KQSSLRLHSERLAI 552
           AGD SH +  +IY  L+ ++E+++  GY  D S    V    DG  K  ++R HSERLAI
Sbjct: 480 AGDRSHAKWVEIYEKLEELEEEMEKAGYVADTS---FVLRAVDGEEKNETIRYHSERLAI 536

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++   PG PIRV KNLRVC DCH   K +S+     +IVRD  RFH F+DG CSC D
Sbjct: 537 AFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGD 596

Query: 613 YW 614
           YW
Sbjct: 597 YW 598


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/645 (35%), Positives = 342/645 (53%), Gaps = 94/645 (14%)

Query: 36  LLSSLTECKSMSQLKQIHAQ------ALRTALPQ-------------QHKTLLIYSRIIH 76
           L + L    ++ Q++Q HA+      A   A+P              +H+         H
Sbjct: 35  LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A      Y   +F +  + ++F  N L+R     V   P  + LF R   +     + H
Sbjct: 95  YA------YPLALFRRANSTSAFASNNLLR-----VLPHPLPLTLFSRFRRR-----NPH 138

Query: 137 TFPFAL--------------KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA- 181
           +F F L               AC++L     G   HA   K G   D+++ N+L+HFY  
Sbjct: 139 SFTFLLASISNHLNAAGPSASACSFL-----GSHVHALAVKAGAAGDLFVRNALVHFYGV 193

Query: 182 -------------------------------SCGHLDLANKVFDNMLERSLVSWNVMIDA 210
                                            G + +A +VFD M  R  +SW+ ++  
Sbjct: 194 SGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGG 253

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +V+  E + AL +FR M +    P+     +  SA A L  L  G + H  + R     +
Sbjct: 254 YVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQR---SGM 310

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              + V  +L+DMY KCG + +AR+VF+ M +RD+ +WN++I G A HG    A++ F+R
Sbjct: 311 PVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFER 370

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
             + E  SP ++TFVGVL+ C+  G+V+EGR YF +++ +Y I P +EHYGC+VDLL RA
Sbjct: 371 F-ISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRA 429

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G + EA+ L+  M + PD V+W ++L + CK H  V L   V  ++IE +    SG YVL
Sbjct: 430 GLVPEAIELIEGMHIAPDPVLWGTILSS-CKTHGLVDLGVSVGNKLIELD-PTHSGYYVL 487

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YA A +W++V  VRKLM+ +G  K  G S +E  G  H+F  GDT H  + QIY  
Sbjct: 488 LSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDT 547

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           LD+I+++L   GY PD S + + D  ++ K  ++++HSERLAIA G + L+ G PIR+ K
Sbjct: 548 LDMINKRLTEAGYVPDVS-SVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVK 606

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCHE +K+++ +F  EIIVRD +RFHH K+G CSC+DYW
Sbjct: 607 NLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 313/546 (57%), Gaps = 16/546 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +A+   +  A +VF  + +       WN +I   A++     +A+ LF RM  +   +P 
Sbjct: 317 YATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA-GMDEEALRLFARMEAEAGFVPC 375

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T    L ACA   AF+  +  H ++ KRG+  + ++ N+L+  YA  G  D+A ++F 
Sbjct: 376 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 435

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAGLAT 250
            +    +VSWN +I   V  G    A +L R MQ L E    P+  T  ++   CA LA 
Sbjct: 436 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 495

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
            + G   H Y +RH   +L TDV V ++L+DMY KCG L ++R VF+ +P+R+  +WN +
Sbjct: 496 PARGKEIHGYAVRH---ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 552

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+ + +HG    A   FDR+       PN +TF+  L+AC+H GMV  G   F  M  ++
Sbjct: 553 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 612

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKKHASVVLSE 429
            + P  +   C+VD+L RAG +DEA  +V++M      V  W ++L A C+ H +V L  
Sbjct: 613 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA-CRLHRNVHLG- 670

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
           E+A + +       +  YVLL  +Y++A +W     VR  M  +GV KEPGCS IE+DG 
Sbjct: 671 EIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGA 730

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSE 548
            H F AG+++HP +++++  ++ +  ++ +RGYTPD S   ++ ++DDG K + LR HSE
Sbjct: 731 IHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTS--CVLHDMDDGDKAAVLRCHSE 788

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA G+L   PG  IRV KNLRVC DCHE  K +S++   EI++RD  RFHHF++G C
Sbjct: 789 KLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQC 848

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 849 SCGDYW 854



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 205/446 (45%), Gaps = 42/446 (9%)

Query: 32  NHSSL---LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           +HS+L   + S    +     + IHA ALR  L  +    +  + +  +A    L  A  
Sbjct: 56  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 115

Query: 89  VFYQIENP--NSFTWNTLIRACARSVDAKPQAIVLFQR---------MIEQGNVLPDKHT 137
           VF  I +   ++ ++N+LI            A+ LF+R          +  G       T
Sbjct: 116 VFGSISDSAHDAVSFNSLI-----------SALCLFRRWDHALAALRAMLAGGHPLTSFT 164

Query: 138 FPFALKACAYLFAFSQ----GKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANK 191
               L+A ++L A +     G++AHA   K GL+     +  N+L+  YA  G +  A +
Sbjct: 165 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 224

Query: 192 VFDNML--ERSLVSWNVMIDAFVQFGEFDSALK-LFRRMQILFEPDGYTFQSITSACAGL 248
           +F         +V+WN M+   VQ G FD A++ L+  + +   PDG TF S   AC+ L
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTS 306
             L +G   HAY+++  D  L  +  V ++L+DMY     +  ARQVF+ +P   + L  
Sbjct: 285 ELLDVGREMHAYVIK--DDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 342

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G+A  G  E AL+ F R+  E  F P   T   VL AC  R     G++     
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA-RSEAFAGKEAVHGY 401

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
           + +  +         L+D+ AR G  D A  + + + + PD V W +L+  C  +   V 
Sbjct: 402 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQ-GHVA 459

Query: 427 LSEEVAKQVIE-SEGGICSGVYVLLS 451
            + ++A+++ +  EGG+      L++
Sbjct: 460 DAFQLAREMQQLEEGGVVPNAITLMT 485


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 321/547 (58%), Gaps = 14/547 (2%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-N 130
           S I  +     ++   R+F ++   N  +W ++I    +   ++ +A+ LF++M+  G  
Sbjct: 124 SMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSE-EALGLFRQMMGCGVE 182

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           V P   T+   + ACA   A  QG Q HAH+FK G   D YI+ +LI FYA+C  ++ + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAG 247
           +VF   L  ++V W  ++  +    + + ALK+F  M    +L  P+  +F S  ++C G
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVL--PNQSSFTSALNSCCG 300

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L  G   H   ++     L TDV V NSLI MY +CG+L+    +F+ + K+++ SW
Sbjct: 301 LEALDWGREIHTAAVKL---GLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 357

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           NS+I+G A HG    AL +F+++V      P+ ITF G+LSAC+H GM  +GR  F    
Sbjct: 358 NSVIVGCAQHGCGMWALAFFNQMV-RSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFS 416

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
              +    L+HY C+VD+L R+G ++EA  L+ NMP+K ++++W  LL AC   H+ + +
Sbjct: 417 ENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSAC-TMHSKLEV 475

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
           +E  AK +I+ E   CS  YVLLS +YASA RW+DV  +R+ M  +G+TK+PG S I I 
Sbjct: 476 AERAAKCIIDLEPH-CSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIK 534

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
           G  +EF +GD SHP + +IY  L+ +  KLK  GY PD  + A+ D  D+ K+  L  HS
Sbjct: 535 GWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPD-QRFALHDVEDEQKEVMLSYHS 593

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLAI  G+++   G  I V KNLRVC DCH   KLI++I   +IIVRD  RFHHF DG 
Sbjct: 594 ERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGR 653

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 654 CSCGDYW 660



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 166/350 (47%), Gaps = 19/350 (5%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A     D+A ++FY++   +  +WN++I+ C    D     + + +++ ++   +P
Sbjct: 33  ITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCAD-----LTMARKLFDE---MP 84

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++    +      +L  F + + A   +F +    D+   NS+I+ Y   G ++   ++F
Sbjct: 85  ERSVVSWTTMINGFL-QFGKIEVAEG-LFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLF 142

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLAT 250
             M  R+++SW  MI    Q G  + AL LFR+M    +  +P   T+  + +ACA  + 
Sbjct: 143 QEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASA 202

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G+  HA++ +   +S   D  ++ +LI  Y  C  ++ + +VF      ++  W ++
Sbjct: 203 LYQGVQIHAHVFK-LGYSF--DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTAL 259

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           + G+ L+ + E ALK F  + + E   PN  +F   L++C     +  GR+     +   
Sbjct: 260 VTGYGLNCKHEDALKVFGEM-MREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 318

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             T V      L+ +  R GN+++ + +   +  K + V W S++  C +
Sbjct: 319 LETDVFVG-NSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQ 366



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 56/322 (17%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD + +   +   A  + F    Q    +F    V DV   NS+I     C  L +A K
Sbjct: 23  FPDVYLYTMMITGYARNYRFDHALQ----LFYEMPVKDVVSWNSMIKGCFDCADLTMARK 78

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251
           +FD M ERS+VSW  MI+ F+QFG+ + A  LF +M                        
Sbjct: 79  LFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF---------------------- 116

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                               D+   NS+I  YC  G ++   ++F+ MP R++ SW S+I
Sbjct: 117 -------------------RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMI 157

Query: 312 LGFALHGRAEAALKYFDRLV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
            G   HGR+E AL  F +++       P S T+  V++AC +   + +G     +  + +
Sbjct: 158 GGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG---VQIHAHVF 214

Query: 371 NITPVLEHY--GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA----CCKKHAS 424
            +    + Y    L+   A    ++++L  V +  +  + VIW +L+      C  + A 
Sbjct: 215 KLGYSFDAYISAALITFYANCKQMEDSLR-VFHGKLHMNVVIWTALVTGYGLNCKHEDAL 273

Query: 425 VVLSEEVAKQVIESEGGICSGV 446
            V  E + + V+ ++    S +
Sbjct: 274 KVFGEMMREGVLPNQSSFTSAL 295



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
           +D A  VFD +    +  + +MI  + +   FD AL+LF  M +    D  ++ S+   C
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV---KDVVSWNSMIKGC 67

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
              A L++         +  D      V+   ++I+ + + G +++A  +F  MP RD+ 
Sbjct: 68  FDCADLTMAR-------KLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 120

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +WNS+I G+  +GR E  L+ F     +E    N I++  ++   +  G   E    F  
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLF-----QEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 366 MIN-EYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           M+     + P    Y C++   A A  + + + +
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQGVQI 209


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 322/583 (55%), Gaps = 54/583 (9%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F     +D A R F +IE  + F WN ++       + K +A+ +F++M+ +G V P+  
Sbjct: 156 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK-KALNVFRKMVLEG-VKPNSI 213

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T   A+ AC  L     G++ H +  K   L SD+ + NSL+ +YA C  +++A + F  
Sbjct: 214 TIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM 273

Query: 196 MLERSLVSWNVM--IDAFVQFGEFDSALKLFRRMQI-------LFEPDGYTFQSITSACA 246
           + +  LVSWN M  +  F Q+G+  +AL+ F+RM I       L   D   + SI SACA
Sbjct: 274 IKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACA 333

Query: 247 -----------------------------------GLATLSLGMWAHAYILRHCDHSLVT 271
                                               LA L  G   H +I+R C   L T
Sbjct: 334 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR-C--GLDT 390

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              + NSLIDMY +CGS+  +R++F+ MP+RDL SWN +I  + +HG    A+  F +  
Sbjct: 391 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 450

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 PN ITF  +LSAC+H G++ EG  YF +M  EY + P +E Y C+VDLL+RAG 
Sbjct: 451 TM-GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 509

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
            +E L  +  MP +P+A +W SLL AC + H +  L+E  A+ + E E    SG YVL++
Sbjct: 510 FNETLEFIEKMPFEPNAAVWGSLLGAC-RIHCNPDLAEYAARYLFELEPQ-SSGNYVLMA 567

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +Y++A RW D   +R LM ++GVTK PGCS IE+    H F  GDTSHP  +QI   ++
Sbjct: 568 NIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKME 627

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +   +K  GY PD +   + D  +D K+ SL  HSE++A+A G+++   G P+R+ KNL
Sbjct: 628 SLYFDIKEIGYVPD-TNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNL 686

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH  TK IS++   +II+RD  RFHHF DG CSC DYW
Sbjct: 687 RVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 178/350 (50%), Gaps = 23/350 (6%)

Query: 38  SSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           S L +C+ +  L+   Q+HAQ +   +        + SR++  +     ++ A R+F ++
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCE---FLGSRLLEVYCQTGCVEDARRMFDKM 71

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N F+W  ++       D + + I LF  M+ +G V PD   FP   KAC+ L  +  
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYE-ETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRV 129

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK  + ++   G   +  +  S++  +  CG +D+A + F+ +  + +  WN+M+  +  
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            GEF  AL +FR+M +   +P+  T  S  SAC  L+ L  G   H Y ++     L +D
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV--EELDSD 247

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI--ILGFALHGRAEAALKYFDRL 330
           +LV NSL+D Y KC S+++AR+ F  + + DL SWN++  + GF  +G  +AAL++F R+
Sbjct: 248 LLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRM 307

Query: 331 -----VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
                V  E  + + + +  ++SAC   G      D    ++ E N++ V
Sbjct: 308 HIACSVFSELSTRDVVVWNSIISACAQSGRSVNALD----LLREMNLSNV 353



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 8/286 (2%)

Query: 133 PDK--HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           PD+    +   L+ C  L+    G Q HA +   G+    ++ + L+  Y   G ++ A 
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLA 249
           ++FD M ER++ SW  +++ +   G+++  +KLF  M      PD + F  +  AC+ L 
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
              +G   + Y+L         +  V  S++DM+ KCG +DIAR+ FE +  +D+  WN 
Sbjct: 126 NYRVGKDVYDYML---SIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNI 182

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           ++ G+   G  + AL  F ++V+E    PNSIT    +SAC +  ++  GR+     I  
Sbjct: 183 MVSGYTSKGEFKKALNVFRKMVLE-GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 241

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +   L     LVD  A+  +++ A      M  + D V W ++L
Sbjct: 242 EELDSDLLVGNSLVDYYAKCRSVEVARRKFG-MIKQTDLVSWNAML 286



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 155/327 (47%), Gaps = 17/327 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY------AF 87
           +SL+    +C+S+   ++      +T L   +  L +     +    A L++      A 
Sbjct: 252 NSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIAC 311

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF ++   +   WN++I ACA+S      A+ L + M    NV  +  T   AL AC+ 
Sbjct: 312 SVFSELSTRDVVVWNSIISACAQS-GRSVNALDLLREM-NLSNVEVNTVTMVSALPACSK 369

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L A  QGK+ H  I + GL +  +I NSLI  Y  CG +  + ++FD M +R LVSWNVM
Sbjct: 370 LAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVM 429

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  +   G    A+ LF++ + +  +P+  TF ++ SAC+    +  G W +  +++  +
Sbjct: 430 ISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEG-WKYFKMMKT-E 487

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGR---AEA 322
           +++   V     ++D+  + G  +   +  E MP + +   W S++    +H     AE 
Sbjct: 488 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 547

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSA 349
           A +Y   L  E   S N +    + SA
Sbjct: 548 AARYLFEL--EPQSSGNYVLMANIYSA 572


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 332/582 (57%), Gaps = 20/582 (3%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNS 98
           E +SM +  Q+H Q ++  +  +  +  + S++  FA+   F DL+YA  +       NS
Sbjct: 2   EVRSMWEALQVHGQVVKLGMGHKDASRKL-SKVFTFAALSPFGDLNYARLLLSTNPTLNS 60

Query: 99  FTWNTLIRACARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           + +NTL+RA +++    P   A+ LF  M       PD  TFPF LK C+       GKQ
Sbjct: 61  YYYNTLLRAFSQTPLPTPPFHALSLFLSMPSP----PDNFTFPFLLKCCSRSKLPPLGKQ 116

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HA + K G   D+YI N L+H Y+  G L LA  +FD M  R +VSW  MI   V    
Sbjct: 117 LHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDL 176

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              A+ LF RM Q   E +  T  S+  ACA    LS+G   HA  L      + +   V
Sbjct: 177 PVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHAN-LEEWGIEIHSKSNV 235

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           + +L+DMY K G +  AR+VF+ +  RD+  W ++I G A HG  + A+  F  + +E S
Sbjct: 236 STALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMF--VDMESS 293

Query: 336 -FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+  T   VL+AC + G++ EG   F  +   Y + P ++H+GCLVDLLARAG + E
Sbjct: 294 GVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKE 353

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV-IESEGGICSGVYVLLSRV 453
           A   V+ MP++PD V+WR+L+ AC K H     +E + K + I+      SG Y+L S V
Sbjct: 354 AEDFVNAMPIEPDTVLWRTLIWAC-KVHGDADRAERLMKHLEIQDMRADDSGSYILASNV 412

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YAS  +W +   VR+LM  KG+ K PG S IE+DG  HEF  GD +HP+ ++I+  L  +
Sbjct: 413 YASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEV 472

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQS-SLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
            +K++  GY P  S+  +  E+DD +++  L  HSE+LA+A G++ +  G  IR+ KNLR
Sbjct: 473 VDKIRKEGYDPRVSEVLL--EMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLR 530

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            C+DCHE  KLIS+I+  +IIVRDR RFHHFK+G CSC DYW
Sbjct: 531 SCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 7/203 (3%)

Query: 32  NHSSLLSSLTECK---SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N ++++S L  C    ++S  +++HA      +    K+ +  + +  +A    +  A +
Sbjct: 195 NEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARK 254

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  + + + F W  +I   A     K  AI +F  M E   V PD+ T    L AC   
Sbjct: 255 VFDDVVHRDVFVWTAMISGLASHGLCK-DAIDMFVDM-ESSGVKPDERTVTAVLTACRNA 312

Query: 149 FAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNV 206
               +G    + + +R G+   +     L+   A  G L  A    + M +E   V W  
Sbjct: 313 GLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRT 372

Query: 207 MIDAFVQFGEFDSALKLFRRMQI 229
           +I A    G+ D A +L + ++I
Sbjct: 373 LIWACKVHGDADRAERLMKHLEI 395


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 342/605 (56%), Gaps = 27/605 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKT-LLIYSRIIHFA 78
           +    +  G   N  +L S+L  C  M  LK++  Q   + +    ++ L +   ++   
Sbjct: 346 LLGQMKRSGICPNIFTLSSALKACAGMG-LKELGRQLHSSLMKMDMESDLFVSVGLVDMY 404

Query: 79  SFADL-DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           S  DL + A   F  +   +   WN +I   ++  +   +A+ LF  M ++G +  ++ T
Sbjct: 405 SKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE-DMEALSLFVEMHKEG-IGFNQTT 462

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
               LK+ A L      +Q H    K G  SD+Y+ NSLI  Y  C H++ A ++F+   
Sbjct: 463 LSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT 522

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
              LVS+  MI A+ Q+G+ + ALKLF  MQ +  +PD +   S+ +ACA L+    G  
Sbjct: 523 IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ 582

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H +IL++     V D+   NSL++MY KCGS+D A + F  + +R + SW+++I G A 
Sbjct: 583 LHVHILKY---GFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQ 639

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HG    AL+ F++++ +E  SPN IT V VL ACNH G+V+E + YF+ M   +   P+ 
Sbjct: 640 HGHGRQALQLFNQML-KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQ 698

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ-- 434
           EHY C++DLL RAG I+EA+ LV+ MP + +A +W +LL A  + H  V L    A+   
Sbjct: 699 EHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA-RIHKDVELGRRAAEMLF 757

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           ++E E    SG +VLL+ +YASA +W +V  VR+LM D  V KEPG S IE+    + F 
Sbjct: 758 ILEPEK---SGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFL 814

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD-ELDDGKQSSLRL----HSER 549
            GD SH ++++IY  LD + + +   GY P      MV+ +L D +QS   L    HSE+
Sbjct: 815 VGDRSHYRSQEIYAKLDELSDLMDKAGYVP------MVEIDLHDVEQSEKELLLYHHSEK 868

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+A G++    G PIRV KNLRVC DCH   K I +I + EIIVRD  RFHHFKDGSCS
Sbjct: 869 LAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCS 928

Query: 610 CMDYW 614
           C DYW
Sbjct: 929 CGDYW 933



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 199/425 (46%), Gaps = 23/425 (5%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFN----NHSSLLSSLTECKSMSQLKQIHAQAL 57
           A  ++Q  P   Q    +   N  ++G+F     ++S LLS     KS+    QIHA   
Sbjct: 24  APKLIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHIT 83

Query: 58  RTAL---PQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           ++ L   P     L+ +YS+  +F       YA ++  +   P+  +W+ LI   A++  
Sbjct: 84  KSGLSDDPSIRNHLINLYSKCRNFG------YARKLVDESSEPDLVSWSALISGYAQN-G 136

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
               A++ F  M   G V  ++ TF   LKAC+ +     GKQ H  +   G   DV++ 
Sbjct: 137 LGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
           N+L+  YA C     + ++FD + ER++VSWN +   +VQ      A+ LF  M +   +
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIK 255

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P+ ++  S+ +AC GL   S G   H Y+++        D    N+L+DMY K G L  A
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIK---LGYDWDPFSANALVDMYAKVGDLADA 312

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
             VFE + + D+ SWN++I G  LH   E AL+   ++       PN  T    L AC  
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM-KRSGICPNIFTLSSALKACAG 371

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
            G+   GR     ++     + +    G LVD+ ++   +++A    + +P K D + W 
Sbjct: 372 MGLKELGRQLHSSLMKMDMESDLFVSVG-LVDMYSKCDLLEDARMAFNLLPEK-DLIAWN 429

Query: 413 SLLDA 417
           +++  
Sbjct: 430 AIISG 434



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 188/385 (48%), Gaps = 15/385 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS++++ T  +  S+ K IH   ++  L          + +  +A   DL  A  VF +I
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIK--LGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           + P+  +WN +I  C    +   QA+ L  +M   G + P+  T   ALKACA +     
Sbjct: 320 KQPDIVSWNAVIAGCVLH-EHHEQALELLGQMKRSG-ICPNIFTLSSALKACAGMGLKEL 377

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H+ + K  + SD++++  L+  Y+ C  L+ A   F+ + E+ L++WN +I  + Q
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437

Query: 214 FGEFDSALKLFRRMQILFEPDGY---TFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           + E   AL LF  M    E  G+   T  +I  + AGL  + +    H   ++   HS  
Sbjct: 438 YWEDMEALSLFVEMHK--EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHS-- 493

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            D+ V NSLID Y KC  ++ A ++FE     DL S+ S+I  +A +G+ E ALK F  +
Sbjct: 494 -DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 552

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
              E   P+      +L+AC +     +G+    V I +Y     +     LV++ A+ G
Sbjct: 553 QDME-LKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAGNSLVNMYAKCG 610

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
           +ID+A    S +  +   V W +++
Sbjct: 611 SIDDAGRAFSELTER-GIVSWSAMI 634



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 165/344 (47%), Gaps = 13/344 (3%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           PQ   +   +I++GN  P   ++   L  C    +   G Q HAHI K GL  D  I N 
Sbjct: 38  PQTTAILN-LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNH 96

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
           LI+ Y+ C +   A K+ D   E  LVSW+ +I  + Q G    AL  F  M +L  + +
Sbjct: 97  LINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            +TF S+  AC+ +  L +G   H  ++         DV V N+L+ MY KC     +++
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVV---SGFEGDVFVANTLVVMYAKCDEFLDSKR 213

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F+ +P+R++ SWN++   +        A+  F  +V+     PN  +   +++AC    
Sbjct: 214 LFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLR 272

Query: 355 MVSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
             S G+     +I   Y+  P   +   LVD+ A+ G++ +A+ +   +  +PD V W +
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNA 329

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           ++ A C  H     + E+  Q+  S  GIC  ++ L S + A A
Sbjct: 330 VI-AGCVLHEHHEQALELLGQMKRS--GICPNIFTLSSALKACA 370


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 313/546 (57%), Gaps = 16/546 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +A+   +  A +VF  + +       WN +I   A++     +A+ LF RM  +   +P 
Sbjct: 317 YATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA-GMDEEALRLFARMEAEAGFVPC 375

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T    L ACA   AF+  +  H ++ KRG+  + ++ N+L+  YA  G  D+A ++F 
Sbjct: 376 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 435

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAGLAT 250
            +    +VSWN +I   V  G    A +L R MQ L E    P+  T  ++   CA LA 
Sbjct: 436 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 495

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
            + G   H Y +RH   +L TDV V ++L+DMY KCG L ++R VF+ +P+R+  +WN +
Sbjct: 496 PARGKEIHGYAVRH---ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 552

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+ + +HG    A   FDR+       PN +TF+  L+AC+H GMV  G   F  M  ++
Sbjct: 553 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 612

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKKHASVVLSE 429
            + P  +   C+VD+L RAG +DEA  +V++M      V  W ++L A C+ H +V L  
Sbjct: 613 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA-CRLHRNVHLG- 670

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
           E+A + +       +  YVLL  +Y++A +W     VR  M  +GV KEPGCS IE+DG 
Sbjct: 671 EIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGA 730

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSE 548
            H F AG+++HP +++++  ++ +  ++ +RGYTPD S   ++ ++DDG K + LR HSE
Sbjct: 731 IHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTS--CVLHDMDDGDKAAVLRCHSE 788

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA G+L   PG  IRV KNLRVC DCHE  K +S++   EI++RD  RFHHF++G C
Sbjct: 789 KLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQC 848

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 849 SCGDYW 854



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 205/446 (45%), Gaps = 42/446 (9%)

Query: 32  NHSSL---LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           +HS+L   + S    +     + IHA ALR  L  +    +  + +  +A    L  A  
Sbjct: 56  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 115

Query: 89  VFYQIENP--NSFTWNTLIRACARSVDAKPQAIVLFQR---------MIEQGNVLPDKHT 137
           VF  I +   ++ ++N+LI            A+ LF+R          +  G       T
Sbjct: 116 VFGSISDSAHDAVSFNSLI-----------SALCLFRRWDHALAALRAMLAGGHPLTSFT 164

Query: 138 FPFALKACAYLFAFSQ----GKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANK 191
               L+A ++L A +     G++AHA   K GL+     +  N+L+  YA  G +  A +
Sbjct: 165 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 224

Query: 192 VFDNML--ERSLVSWNVMIDAFVQFGEFDSALK-LFRRMQILFEPDGYTFQSITSACAGL 248
           +F         +V+WN M+   VQ G FD A++ L+  + +   PDG TF S   AC+ L
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTS 306
             L +G   HAY+++  D  L  +  V ++L+DMY     +  ARQVF+ +P   + L  
Sbjct: 285 ELLDVGREMHAYVIK--DDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 342

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G+A  G  E AL+ F R+  E  F P   T   VL AC  R     G++     
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA-RSEAFAGKEAVHGY 401

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
           + +  +         L+D+ AR G  D A  + + + + PD V W +L+  C  +   V 
Sbjct: 402 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQ-GHVA 459

Query: 427 LSEEVAKQVIE-SEGGICSGVYVLLS 451
            + ++A+++ +  EGG+      L++
Sbjct: 460 DAFQLAREMQQLEEGGVVPNAITLMT 485


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 326/574 (56%), Gaps = 15/574 (2%)

Query: 48  QLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR 106
            L+QIHA  LRT+L +        +SR+       D++Y+ RVF Q  NP     NT+IR
Sbjct: 26  HLRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIR 85

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           A + S     +   LF+ +    +   +  +  FALK C        G Q H  IF  G 
Sbjct: 86  AFSLS-QTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGF 144

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           +SD  +  +L+  Y++C +   A KVFD + +R  VSWNV+I  +++       L LF +
Sbjct: 145 LSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDK 204

Query: 227 MQ----ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL-VNNSLID 281
           M+       +PD  T      ACA L  L  G   H +I    D + ++  L ++N+L+ 
Sbjct: 205 MKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFI----DENGLSGALNLSNTLVS 260

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY +CGS+D A +VF  M +R++ SW ++I G A++G  + A++ F+ ++ +   SP   
Sbjct: 261 MYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEML-KFGISPEEQ 319

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           T  G+LSAC+H G+V EG  +FD M + E+ I P L HYGC+VDLL RA  +D+A  L+ 
Sbjct: 320 TLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIK 379

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
           +M MKPD+ IWR+LL AC + H +V L E V   +IE +    +G YVLL   Y+S  +W
Sbjct: 380 SMEMKPDSTIWRTLLGAC-RVHGNVELGERVIAHLIEFKAEE-AGDYVLLLNTYSSVGKW 437

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
             V  +R LM  K +   PGCS+IE+ G  HEF   D SHP+ ++IY  L  I+++LK  
Sbjct: 438 EKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIA 497

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY  + +      + ++ K  +LR HSE+LAIA GIL   P   IRV KNLR C DCH  
Sbjct: 498 GYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNF 557

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K +S +++  +IVRDR+RFHHFK GSCSC D+W
Sbjct: 558 AKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/540 (40%), Positives = 319/540 (59%), Gaps = 15/540 (2%)

Query: 83  LDYAFRVFYQIENP---NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           L+ A RVF ++      +  +WN +I AC +  +   +A+ LF+ M+ +G +  D  T  
Sbjct: 190 LNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGL-EAVELFREMVRRG-LKVDMFTMA 247

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC-GHLDLANKVFDNMLE 198
             L A   +     G Q H  + K G   + ++ + LI  Y+ C G +    KVF+ +  
Sbjct: 248 SVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 199 RSLVSWNVMIDAFVQFGEF-DSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMW 256
             LV WN MI  F Q+ +  +  +  FR MQ   F PD  +F  +TSAC+ L++ S+G  
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQ 367

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA  ++         V VNN+L+ MY KCG++  AR+VF++MP+ ++ S NS+I G+A 
Sbjct: 368 VHALAIK--SDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQ 425

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HG    +L+ F+ L++++  +PN+ITF+ VLSAC H G V EG+ YF++M   + I P  
Sbjct: 426 HGVEVESLRLFE-LMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEA 484

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           EHY C++DLL RAG + EA  ++  MP  P ++ W +LL A C+KH +V L+ + A + +
Sbjct: 485 EHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGA-CRKHGNVELAVKAANEFL 543

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
           + E    +  YV+LS +YASA RW +   V++LM ++GV K+PGCS IEID   H F A 
Sbjct: 544 QLE-PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAE 602

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE--LDDGKQSSLRLHSERLAIAL 554
           DTSHP  K+I+ ++  I  K+K  GY PD   A + DE    D K+  L  HSE+LA+A 
Sbjct: 603 DTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAF 662

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G+++ +  +PI V KNLR+C DCH   KLIS I   EI VRD  RFH FK+G CSC DYW
Sbjct: 663 GLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 165/349 (47%), Gaps = 19/349 (5%)

Query: 64  QHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
           Q+  +  Y+ +I+ +A  + +  A +VF +I  P+  ++NTLI A A   + +P A+ LF
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRP-ALRLF 129

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
             + E    L D  T    + AC         +Q H  +   G      +NN+++  Y+ 
Sbjct: 130 AEVRELRFGL-DGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSR 186

Query: 183 CGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            G L+ A +VF  M E   R  VSWN MI A  Q  E   A++LFR M +   + D +T 
Sbjct: 187 KGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTM 246

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-GSLDIARQVFE 297
            S+ +A   +  L  GM  H  +++   H    +  V + LID+Y KC G +   R+VFE
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHG---NSHVGSGLIDLYSKCAGGMVECRKVFE 303

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            +   DL  WN++I GF+ +        +  R +    F P+  +FV V SAC++    S
Sbjct: 304 EIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPS 363

Query: 358 EGRDYFDVMINE---YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
            G+    + I     YN   V      LV + ++ GN+ +A  +   MP
Sbjct: 364 VGKQVHALAIKSDIPYNRVSV---NNALVAMYSKCGNVHDARRVFDTMP 409



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 134/319 (42%), Gaps = 46/319 (14%)

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD-------- 187
            TF   LKAC        GK  HA  FK  +    Y++N     Y+ CG L         
Sbjct: 10  QTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDL 69

Query: 188 -----------------------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                                  LA +VFD + +  +VS+N +I A+   GE   AL+LF
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLF 129

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             ++ L F  DG+T   +  AC     + L    H +++  C +       VNN+++  Y
Sbjct: 130 AEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVV-CGYDCYAS--VNNAVLACY 184

Query: 284 CKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
            + G L+ AR+VF  M +   RD  SWN++I+    H     A++ F R +V      + 
Sbjct: 185 SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELF-REMVRRGLKVDM 243

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC-LVDLLAR-AGNIDEALHL 398
            T   VL+A      +  G  +  +MI          H G  L+DL ++ AG + E   +
Sbjct: 244 FTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGN--SHVGSGLIDLYSKCAGGMVECRKV 301

Query: 399 VSNMPMKPDAVIWRSLLDA 417
              +   PD V+W +++  
Sbjct: 302 FEEIA-APDLVLWNTMISG 319



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           D +   +V   N+LI+ Y K   + +ARQVF+ +P+ D+ S+N++I  +A  G    AL+
Sbjct: 68  DLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALR 127

Query: 326 YFDRLVVEESFSPNSITFVGVLSAC-NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
            F   V E  F  +  T  GV+ AC +  G+V +   +  V++  Y+    + +   ++ 
Sbjct: 128 LFAE-VRELRFGLDGFTLSGVIIACGDDVGLVRQLHCF--VVVCGYDCYASVNN--AVLA 182

Query: 385 LLARAGNIDEALHLVSNMPMKP--DAVIWRSLLDAC 418
             +R G ++EA  +   M      D V W +++ AC
Sbjct: 183 CYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 337/602 (55%), Gaps = 19/602 (3%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           S +  N N  E ++    +LL S T  +S+ Q  Q+HA  L+  L       L+   +I+
Sbjct: 12  SQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGL---QTIPLVSHNLIN 68

Query: 77  FASFADLD-YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
             S   L  ++ +VF +    +S TW+++I A A++ +A   A+  F+RM+  G V PD 
Sbjct: 69  LYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQN-EAPLLALQFFRRMLNDG-VRPDD 126

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           H +P A KAC +L     GK  H    K G   DV++ +SL+  YA CG +  A  +FD 
Sbjct: 127 HIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDE 186

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           M ER++VSW+ MI  + Q  +   AL LF++  I   + + +TF S+   C+    L LG
Sbjct: 187 MPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG 246

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H   L+    S  +   V ++LI +Y KCG ++ A QVF+ +P R+L  WNS+++  
Sbjct: 247 KLIHGLCLKM---SFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIAC 303

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A H   +     F+ +       PN I F+ VL AC+H G+V +GR+YF +M  +Y I P
Sbjct: 304 AQHAHTQRVFGLFEEMG-NVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLM-RDYGIEP 361

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             EHY  LVDLL RAG + EA+ ++  MPM+P   +W +LL  C + H    ++  VA +
Sbjct: 362 ETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGC-RIHKDTEMAAFVADR 420

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           ++E +    SG++VLLS  YA+A R+ +   +RK++ D+GV KE G S +E     H F 
Sbjct: 421 ILEMDSS-SSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFT 479

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG--KQSSLRLHSERLAI 552
           AGD SH +  +IY  L+ ++E+++  GY  D S    V    DG  K  ++R HSERLAI
Sbjct: 480 AGDRSHAKWVEIYEKLEELEEEMEKAGYVADTS---FVLRAVDGEEKNETIRYHSERLAI 536

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++   PG PIRV KNLRVC DCH   K +S+     +IVRD  RFH F+DG CSC D
Sbjct: 537 AFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGD 596

Query: 613 YW 614
           YW
Sbjct: 597 YW 598


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 338/601 (56%), Gaps = 18/601 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH 76
           + +  R EG   N  +++S L  C  +  +     IH   ++  L  +    +  + I  
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL--EFDLFVSNALINM 360

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A F +L+ A + F Q+   +  +WN++I A  ++ D    A   F +M   G   PD  
Sbjct: 361 YAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN-DDPVTAHGFFVKMQLNG-FQPDLL 418

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T        A        +  H  I +RG L+ DV I N+++  YA  G LD A+KVF+ 
Sbjct: 419 TLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEI 478

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSL 253
           +L + ++SWN +I  + Q G    A+++++ M+   E  P+  T+ SI  A A +  L  
Sbjct: 479 ILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           GM  H  +++   H    DV V   LID+Y KCG L  A  +F  +P+    +WN+II  
Sbjct: 539 GMRIHGRVIKTNLH---LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
             +HG AE  LK F  ++ +E   P+ +TFV +LSAC+H G V EG+  F +M  EY I 
Sbjct: 596 HGIHGHAEKTLKLFGEML-DEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIK 653

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P L+HYGC+VDLL RAG ++ A   + +MP++PDA IW +LL AC + H ++ L +  + 
Sbjct: 654 PSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGAC-RIHGNIELGKFASD 712

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           ++ E +     G YVLLS +YA+  +W  V  VR L  ++G+ K PG S+IE++     F
Sbjct: 713 RLFEVDSKNV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 771

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
           + G+ SHP+ K+IY  L ++  K+KS GY PDYS   + D  +D K+  L  HSERLAIA
Sbjct: 772 YTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYS-FVLQDVEEDEKEHILTSHSERLAIA 830

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            GI++  P  PIR+FKNLRVC DCH  TK ISRI   EI+VRD  RFHHFKDG CSC DY
Sbjct: 831 FGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDY 890

Query: 614 W 614
           W
Sbjct: 891 W 891



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 207/437 (47%), Gaps = 28/437 (6%)

Query: 12  TPQTHSHSIFNNNRN-EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           +PQ  S+ + N N   + +F   SS  +   +C        +HA  +     Q   ++ I
Sbjct: 105 SPQFSSYGLGNQNEEIDFNFLFDSSTKTPFAKC--------LHALLVVAGKVQ---SIFI 153

Query: 71  YSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
            +R+++ +A+  D+  +   F QI   + +TWN++I A   +     +AI  F +++   
Sbjct: 154 STRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFH-EAIGCFYQLLLVS 212

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            + PD +TFP  LKAC  L     G++ H   FK G   +V++  SLIH Y+  G   +A
Sbjct: 213 EIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIA 269

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
             +FD+M  R + SWN MI   +Q G    AL +   M++   + +  T  SI   C  L
Sbjct: 270 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQL 329

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             +S  M  H Y+++   H L  D+ V+N+LI+MY K G+L+ AR+ F+ M   D+ SWN
Sbjct: 330 GDISTAMLIHLYVIK---HGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWN 386

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           SII  +  +     A  +F ++ +   F P+ +T V + S           R     ++ 
Sbjct: 387 SIIAAYEQNDDPVTAHGFFVKMQL-NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMR 445

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL-----DACCKKHA 423
              +   +     +VD+ A+ G +D A H V  + +  D + W +L+     +    +  
Sbjct: 446 RGWLMEDVVIGNAVVDMYAKLGLLDSA-HKVFEIILVKDVISWNTLITGYAQNGLASEAI 504

Query: 424 SVVLSEEVAKQVIESEG 440
            V    E  K++I ++G
Sbjct: 505 EVYKMMEECKEIIPNQG 521


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 315/536 (58%), Gaps = 14/536 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D   +VF  +   +  +WNT+I   A++     +A+ + + M + G + PD  T    L
Sbjct: 176 IDCVKKVFDMMPVRDVVSWNTVIAGFAQN-GMYVEALDMVREMGKNGKLKPDSFTLSSIL 234

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
              A     ++GK+ H +  + G   DV+I +SLI  YA C  L+ + + F  +  +  +
Sbjct: 235 PIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAI 294

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN +I   VQ GEFD  L  FRRM +   +P   +F S+  ACA L  LSLG   H  I
Sbjct: 295 SWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCI 354

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +R        +  + +SL+DMY KCG++ +AR VF+ + KRD+ +W +II+G A+HG A 
Sbjct: 355 VRL---GFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHAL 411

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F+ ++ E+   P  + F+ VL+AC+H G+V EG  YF+ M  ++ I P LEHY  
Sbjct: 412 DAVSLFENML-EDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAA 470

Query: 382 LVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IES 438
           + DLL RAG ++EA   +SNM  ++P   +W S+L A C+ H SV L+E+V  ++  ++S
Sbjct: 471 VADLLGRAGRLEEAYDFISNMRGVQPTGSVW-SILLAACRAHKSVELAEKVLDKLLSVDS 529

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           E     G YVL+S +Y++A+RW D   +R  M  KG+ K P CS IE+    H F AGD 
Sbjct: 530 EN---MGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDK 586

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
           SHP   +I   LD++ E+++  GY  D +Q  + D  ++ K+  L  HSERLAIA GI++
Sbjct: 587 SHPYYDKINKALDVLLEQMEKEGYVIDTNQV-LHDVDEELKRELLHNHSERLAIAYGIIS 645

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              G  IRV KN+RVC DCH   K I++I   EI VRD +RFHHFK+GSCSC DYW
Sbjct: 646 TTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 123/288 (42%), Gaps = 29/288 (10%)

Query: 153 QGKQAHAHIFK-RG-LVSDVYINNSLIHFYASCGH-LDLANKVFDNMLERSLVSWNVMID 209
           Q KQ HAHI K +G L SD  +  SL        H L L N +         ++W+ +I 
Sbjct: 27  QAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLLQHSLHLFNSL---PSPPPPLAWSSIIK 83

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            +        +   F  M+ L   P+ + F S+  A   L    L    HA  +R     
Sbjct: 84  CYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVR---LG 140

Query: 269 LVTDVLVNNSLIDMYCKC---------------GSLDIARQVFESMPKRDLTSWNSIILG 313
           L +D+ + N+LI+ Y K                  +D  ++VF+ MP RD+ SWN++I G
Sbjct: 141 LDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAG 200

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NEYNI 372
           FA +G    AL     +       P+S T   +L        V++G++     + N ++ 
Sbjct: 201 FAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDG 260

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              +     L+D+ A+   ++ +L     +P K DA+ W S++  C +
Sbjct: 261 DVFIG--SSLIDMYAKCNRLECSLRAFYILPRK-DAISWNSIIAGCVQ 305


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 327/584 (55%), Gaps = 12/584 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            +  +L + T    +   +QIH+  ++     Q    +    I  ++ +  LD A R+  
Sbjct: 347 TYPCMLRTCTHTGEIGLGEQIHSLTIKNGF--QSDMYVSGVLIDMYSKYGWLDKAQRILD 404

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            IE  +  +W ++I    +    K +A+  F+ M   G + PD      A+ ACA + A 
Sbjct: 405 MIEEKDVVSWTSMIAGYVQHEFCK-EALETFKEMQACG-IWPDNIGLASAISACAGIKAV 462

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            QG Q HA ++  G  +DV I N L++ YA CG    A   F+ +  +  ++WN +I  F
Sbjct: 463 HQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGF 522

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G ++ ALK+F +M Q   + + +TF S  SA A LA +  G   HA +++       
Sbjct: 523 AQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT---GYT 579

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           ++  ++N+LI +Y KCGS++ A+  F  M KR+  SWN+II   + HGR   AL  FD++
Sbjct: 580 SETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQM 639

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             ++   P+ +TFVGVL+AC+H G+V EG  YF  M NE+ I P  +HY C+VD+L RAG
Sbjct: 640 K-QQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAG 698

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            +D A   V  MP+  D+++WR+LL A CK H ++ + E  AK ++E E    S  YVLL
Sbjct: 699 QLDRAKRFVEEMPIPADSMVWRTLLSA-CKVHKNLEIGEFAAKHLLELEPHD-SASYVLL 756

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S  YA   +W     +RK+M D+GV KEPG S IE+  + H FF GD  HP   QIY FL
Sbjct: 757 SNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFL 816

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             ++++L   GY  +        E  +GK  +  +HSE+LA+A G+++L   MP+RV KN
Sbjct: 817 SHLNDRLYKIGYKQENYHLFHEKE-KEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKN 875

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   K  S +   EI++RD  RFHHF +GSCSC DYW
Sbjct: 876 LRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 194/409 (47%), Gaps = 15/409 (3%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
            IF+  +  G   +  ++ S L  C ++  L   KQ+H+  L+  +   +  ++  S + 
Sbjct: 230 GIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDY--IMEGSLLD 287

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +    D++ A ++F   +  N   WN ++ A  + +D   ++  +F RM+  G V P+K
Sbjct: 288 LYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQ-IDDLAKSFDIFYRMLAAG-VRPNK 345

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+P  L+ C +      G+Q H+   K G  SD+Y++  LI  Y+  G LD A ++ D 
Sbjct: 346 FTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDM 405

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           + E+ +VSW  MI  +VQ      AL+ F+ MQ     PD     S  SACAG+  +  G
Sbjct: 406 IEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQG 465

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              HA +          DV + N L+ +Y +CG    A   FE++  ++  +WN +I GF
Sbjct: 466 SQIHARVYV---SGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGF 522

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A  G  E ALK F ++  +     N  TFV  +SA  +   + +G+     +I     T 
Sbjct: 523 AQSGLYEEALKVFMKM-DQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT-GYTS 580

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             E    L+ L  + G+I++A      M  K + V W +++  CC +H 
Sbjct: 581 ETEISNALISLYGKCGSIEDAKMDFFEMT-KRNEVSWNTII-TCCSQHG 627



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 238/527 (45%), Gaps = 48/527 (9%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +IHA+A+   L       +I + +I  +A    +  A RVF ++   ++ +W  ++   A
Sbjct: 63  EIHAKAIICGLSGYR---IIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++     +A+ L++ M   G V+P  +     L AC     F  G+  H  ++K+G  S+
Sbjct: 120 QN-GLGEEAVRLYREMHRSG-VVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSE 177

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
            ++ N+LI  Y  C    LA++VF +ML    V++N +I    Q G  D AL +F  MQ+
Sbjct: 178 TFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               PD  T  S+ +AC+ +  L  G   H+Y+L+     +  D ++  SL+D+Y K G 
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLK---AGMSLDYIMEGSLLDLYVKSGD 294

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL--VVEESFSPNSITFVGV 346
           ++ A Q+F+S  + ++  WN +++ +   G+ +   K FD    ++     PN  T+  +
Sbjct: 295 IEEALQIFDSGDRTNVVLWNLMLVAY---GQIDDLAKSFDIFYRMLAAGVRPNKFTYPCM 351

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           L  C H G +  G     + I        +   G L+D+ ++ G +D+A  ++ +M  + 
Sbjct: 352 LRTCTHTGEIGLGEQIHSLTIKN-GFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEK 409

Query: 407 DAVIWRSLLDACCK----KHASVVLSEEVAKQVIESEGGI------CSGVYV------LL 450
           D V W S++    +    K A     E  A  +     G+      C+G+        + 
Sbjct: 410 DVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIH 469

Query: 451 SRVYASARR-----WNDVGLVRKLMTDKGVTKEPGCSSIEI---DGIAH----EFFAGDT 498
           +RVY S        WN  GLV  L    G++KE   S   I   +GI        FA   
Sbjct: 470 ARVYVSGYSADVSIWN--GLVY-LYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSG 526

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
            + +  +++  +D    K     +    S +A + ++  GKQ   R+
Sbjct: 527 LYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARV 573


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 340/610 (55%), Gaps = 27/610 (4%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH- 76
           F++ R      N S+   ++  C S+  L   KQIH QA           + + S +I  
Sbjct: 74  FSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSD---IFVASALIDM 130

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM----------I 126
           ++    L+ A ++F +I   N  +W ++I    ++  A+ +A+ LF+            I
Sbjct: 131 YSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAR-EAVFLFKEFLLVDETDYDEI 189

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
               V  D       + ACA +   S  +  H    K+G    + + N+L+  YA CG +
Sbjct: 190 VGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEI 249

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP--DGYTFQSITSA 244
            ++ KVFD M E  + SWN +I  + Q G    A  LF  M    E   +  T  ++  A
Sbjct: 250 SVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLA 309

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA    L +G   H  +++     L  +++V  S++DMYCKCG +++AR+ F+ + ++++
Sbjct: 310 CAHSGALQIGKCIHDQVVKM---ELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNV 366

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            SW  ++ G+ +HG  + A+K F  ++      PN ITFV VL+AC+H G++ EG  +F+
Sbjct: 367 KSWTVMVAGYGMHGHGKEAMKVFYEMI-RCGIKPNYITFVSVLAACSHAGLLKEGWHWFN 425

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M  E+++ P +EHY C+VDLL RAG + EA  L+  M +KPD ++W SLL AC + H +
Sbjct: 426 KMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGAC-RIHKN 484

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V L E  A+++ + +   C G YVLLS +YA A RW+DV  +R LM + G+ K PG S +
Sbjct: 485 VELGEISARKLFKLDPSNC-GYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIV 543

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           E  G  H F  GD  HPQ ++IY +LD ++ KL+  GY P+ + + + D   + K   LR
Sbjct: 544 EHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVT-SVLYDVDVEEKGMVLR 602

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
           +HSE+LA+A GI+N  PG  I++ KNLR+C DCH   KLIS+I N EI++RD  RFHHFK
Sbjct: 603 VHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFK 662

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 663 DGLCSCGDYW 672



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 162/315 (51%), Gaps = 18/315 (5%)

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           ++  + ++WN++I   ARS D+  QA+  F  M  + ++ P++ TFP  +K+C+ L+   
Sbjct: 46  VDKTSVYSWNSIIADFARSGDS-LQALYAFSSM-RKLSLHPNRSTFPCTIKSCSSLYDLC 103

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GKQ H   F  G  SD+++ ++LI  Y+ CG+L+ A K+FD + ER++VSW  MI  +V
Sbjct: 104 AGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYV 163

Query: 213 QFGEFDSALKLFRRMQILFEP------------DGYTFQSITSACAGLATLSLGMWAHAY 260
           Q      A+ LF+   ++ E             D      + SACA +   S+    H  
Sbjct: 164 QNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
            ++      +    V N+L+D Y KCG + ++R+VF+ M + D+ SWNS+I  +A +G +
Sbjct: 224 AVKKGFEGCLA---VGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLS 280

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             A   F  +V       N++T   VL AC H G +  G+   D ++ +  +   L    
Sbjct: 281 VEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVV-KMELEDNLVVGT 339

Query: 381 CLVDLLARAGNIDEA 395
            +VD+  + G ++ A
Sbjct: 340 SIVDMYCKCGRVEMA 354


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 333/614 (54%), Gaps = 15/614 (2%)

Query: 5   IVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTAL 61
           +V  G  +    S  IF   +  G   N  +    L  C    Q++   QIH+ +++   
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 62  PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVL 121
                   +   I  ++ +  LD A ++   +E  +  +W ++I    +  D   +A+  
Sbjct: 378 ESDMYVSGVL--IDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQH-DFCEEALAT 434

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F+ M + G V PD      A  ACA + A  QG Q HA ++  G  +D+ I N+L++ YA
Sbjct: 435 FKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYA 493

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            CG  + A  +F  +  +  ++WN +I  F Q   +  AL +F +M Q   + + +TF S
Sbjct: 494 RCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFIS 553

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             SA A LA +  G   H   ++   H+  T+V   N+LI +Y KCGS++ A+ +F  M 
Sbjct: 554 AISALANLADIKQGKQVHGRAVK-TGHTSETEV--ANALISLYGKCGSIEDAKMIFSEMS 610

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            R+  SWN+II   + HGR   AL  FD++  +E   PN +TF+GVL+AC+H G+V EG 
Sbjct: 611 LRNEVSWNTIITSCSQHGRGLEALDLFDQMK-QEGLKPNDVTFIGVLAACSHVGLVEEGL 669

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            YF  M N Y + P+ +HY C+VD+L RAG +D A   V  MP+  +A+IWR+LL A CK
Sbjct: 670 SYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSA-CK 728

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H ++ + E  AK ++E E    S  YVLLS  YA   +W +   VRK+M D+G+ KEPG
Sbjct: 729 VHKNIEIGELAAKHLLELEPHD-SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPG 787

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S IE+    H FF GD  HP + QIY FL  ++++L   GY  +        E  + K 
Sbjct: 788 RSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKE-QEQKD 846

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +  +HSE+LA+A G++ L P +P+RV KNLRVC DCH   K  S +   EI++RD  RF
Sbjct: 847 PTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRF 906

Query: 601 HHFKDGSCSCMDYW 614
           HHF  GSCSC DYW
Sbjct: 907 HHFNSGSCSCGDYW 920



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 9/331 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +VF ++ + +  +W  ++   A+S   K +A  L+ +M     V+P  +     L AC
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQSGLGK-EAFRLYSQM-HWTAVIPTPYVLSSVLSAC 154

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
                F+QG+  HA ++K+   S+ ++ N+LI  Y   G   LA +VF +ML    V++N
Sbjct: 155 TKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFN 214

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I    Q G  + AL++F  MQ+    PD  T  S+ +ACA +  L  G   H+Y+L+ 
Sbjct: 215 TLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK- 273

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               +  D +   SL+D+Y KCG ++ A  +F    + ++  WN +++ +        + 
Sbjct: 274 --AGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           + F ++       PN  T+  +L  C   G +  G     + I        +   G L+D
Sbjct: 332 EIFGQMQA-TGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKN-GFESDMYVSGVLID 389

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + ++ G +D+A  ++  M  K D V W S++
Sbjct: 390 MYSKYGCLDKARKIL-EMLEKRDVVSWTSMI 419



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 9/264 (3%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           + HA    RGL +D  I N LI  YA  G +  A +VF  +  R  VSW  M+  + Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 216 EFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
               A +L+ +M      P  Y   S+ SAC      + G   HA + +    +  ++  
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYK---QAFCSETF 180

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V N+LI +Y   GS  +A +VF  M   D  ++N++I G A  G  E AL+ FD + +  
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQL-S 239

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNID 393
              P+ +T   +L+AC   G + +G+     ++    +   + E  G L+DL  + G+I+
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIE 297

Query: 394 EALHLVSNMPMKPDAVIWRSLLDA 417
            A H + N+  + + V+W  +L A
Sbjct: 298 TA-HDIFNLGDRTNVVLWNLMLVA 320


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/539 (40%), Positives = 309/539 (57%), Gaps = 14/539 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A F  LD A  +F  +   N  +W T++ A A +   K +A+     M   G V  + +
Sbjct: 117 YAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDG-VAANSY 175

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L AC      +     HA I K GL SDV++ +SLI  Y   G LD    VFD M
Sbjct: 176 TFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEM 232

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
           +   LV WN +I  F Q G+   A++LF RM +  F  +  T  S+  AC G+  L +G 
Sbjct: 233 VTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGR 292

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA++L++       D++++N+L+DMYCKCG L  A  +F  M  RD+ SW+++I G A
Sbjct: 293 QVHAHVLKY-----DRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLA 347

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +GR+  ALK FD L+  E  +PN+IT VGVL AC+H G+V +G  YF  M   + I P 
Sbjct: 348 QNGRSVEALKVFD-LMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPE 406

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            EH  C+VDLL RAG +DEA+  +  M  +PD+VIWR+LL AC + H +  L+   A ++
Sbjct: 407 REHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGAC-RMHKNATLASYAATEI 465

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           ++ E     G  +LLS +YA  R+W++     K M D+GV KEPG S IE+  + H F A
Sbjct: 466 LKLEPED-QGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIA 524

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           G+ SHP + +I   L+ +  + K  GY P  ++  + D   + K+  L+ HSE+LAIA G
Sbjct: 525 GELSHPCSDRIVQELNRLIRRAKDLGYVPQ-TEFVLQDLGTEQKEDLLKYHSEKLAIAFG 583

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +N   G P+R+ KNLR+C DCH   KL+S+     II+RD  RFHHF+ G CSC DYW
Sbjct: 584 TMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 347/587 (59%), Gaps = 19/587 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-DYAFRVFYQ 92
           +++L  L    ++ +  Q+H   +++ L     T+ + + +++  S + +   A  VF  
Sbjct: 197 AAVLGGLAADGAVEKGVQVHTMVIKSGLDS---TIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 93  IENPNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +EN N+ +WN++I       +D   +A  LF RM  +G  L  +  F   +K CA +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDL--EAFELFYRMRLEGVKLT-QTIFATVIKLCANIKEM 310

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDA 210
           S  KQ H  + K G   D+ I  +L+  Y+ C  +D A K+F  M   +++VSW  +I  
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 211 FVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAG-LATLSLGMWAHAYILRHCDH 267
           +VQ G  D A+ LF +M  +   EP+ +TF S+ +ACA   A++  G   H+  ++    
Sbjct: 371 YVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS--- 427

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
                + V+++L+ MY K G+++ A +VF+    RDL SWNS+I G+A HG  + +LK F
Sbjct: 428 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIF 487

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +   ++   + ITF+GV+SAC H G+V+EG+ YFD+M+ +Y+I P +EHY C+VDL +
Sbjct: 488 EEMR-SKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYS 546

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +++A+ L++ MP    A IWR+LL A C+ H +V L E  A+++I  +    S  Y
Sbjct: 547 RAGMLEKAMDLINKMPFPAGATIWRTLL-AACRVHLNVQLGELAAEKLISLQPQD-SAAY 604

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA+A  W +   VRKLM  K V KE G S IE+      F AGD SHPQ+ +IY
Sbjct: 605 VLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIY 664

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L+ +  +LK  GY PD ++  + D  ++ K+  L  HSERLAIA G++   PG PI++
Sbjct: 665 LKLEELSIRLKDAGYYPD-TKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQI 723

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCH V KLIS+I   +I+VRD  RFHHFK GSCSC DYW
Sbjct: 724 VKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 171/386 (44%), Gaps = 45/386 (11%)

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
           D   +A+ LF  +   G+   D  +    LK C  LF    GKQ H    K G V DV +
Sbjct: 71  DQNKEALNLFLGLRRSGSP-TDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSV 129

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
             SL+  Y     ++   +VFD M  +++VSW  ++  + Q G  + ALKLF +MQ+   
Sbjct: 130 GTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI 189

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           +P+ +TF ++    A    +  G+  H  +++     L + + V NS+++MY K   +  
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK---SGLDSTIFVGNSMVNMYSKSLMVSD 246

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           A+ VF+SM  R+  SWNS+I GF  +G    A + F R+ +E      +I F  V+  C 
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTI-FATVIKLCA 305

Query: 352 -----------HRGMVSEGRDY---------------------FDVMINEYNITPVLEHY 379
                      H  ++  G D+                     F +    + +  V+  +
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS-W 364

Query: 380 GCLVDLLARAGNIDEALHLVSNM----PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
             ++    + G  D A++L   M     ++P+   + S+L+AC    ASV   ++     
Sbjct: 365 TAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCS 424

Query: 436 IESEGGICSGVYVLLSRVYASARRWN 461
           I+S  G  + + V  + V   A+R N
Sbjct: 425 IKS--GFSNALCVSSALVTMYAKRGN 448


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/530 (39%), Positives = 313/530 (59%), Gaps = 10/530 (1%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +VF +I   N  +W  +I     S     +A+ LF+ ++E G + PD  T    L AC
Sbjct: 156 ARKVFDEIPEKNVVSWTAIICGYIES-GCFGEALGLFRGLLEMG-LRPDSFTLVRILYAC 213

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           + +   + G+    ++ + G V +V++  SL+  YA CG ++ A +VFD M+E+ +V W+
Sbjct: 214 SRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWS 273

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  +   G    AL +F  MQ     PD Y    + SAC+ L  L LG WA    L  
Sbjct: 274 ALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARG--LMD 331

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
            D  L   VL   +LID Y KCGS+  A++VF+ M ++D   +N++I G A+ G   AA 
Sbjct: 332 GDEFLSNPVL-GTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAF 390

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F ++V +    P+  TFVG+L  C H G+V +G  YF  M + +++TP +EHYGC+VD
Sbjct: 391 GVFGQMV-KVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVD 449

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           L ARAG + EA  L+ +MPM+ ++++W +LL  C + H    L+E V KQ+IE E    S
Sbjct: 450 LQARAGLLVEAQDLIRSMPMEANSIVWGALLGGC-RLHKDTQLAEHVLKQLIELEP-WNS 507

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YVLLS +Y+++ RW++   +R  +  KG+ K PGCS +E+DG+ HEF  GDTSHP + 
Sbjct: 508 GHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSH 567

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +IY  L+ + + L+  GY P  ++  + D  ++ K+  L  HSE+LA+A  +++      
Sbjct: 568 KIYEKLESLFKDLREAGYNPT-TEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDV 626

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCHE  KL+S++   EIIVRD  RFHHF +GSCSC DYW
Sbjct: 627 IRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 202/388 (52%), Gaps = 19/388 (4%)

Query: 38  SSLTEC-----KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           S L +C     KS+ Q KQ H   LR  L Q   T LI   +     FA   YA  VF Q
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQD--TYLINLLLRSSLHFAATQYATVVFAQ 60

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL-FAF 151
             +PN F +NTLIR    S DA   A+ ++  M + G   PD  TFPF LKAC  L   F
Sbjct: 61  TPHPNIFLYNTLIRGMV-SNDAFRDAVSVYASMRQHG-FAPDNFTFPFVLKACTRLPHYF 118

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G   H+ + K G   DV++   L+  Y+  G L  A KVFD + E+++VSW  +I  +
Sbjct: 119 HVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGY 178

Query: 212 VQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           ++ G F  AL LFR  +++   PD +T   I  AC+ +  L+ G W   Y+    +   V
Sbjct: 179 IESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMR---ESGSV 235

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +V V  SL+DMY KCGS++ AR+VF+ M ++D+  W+++I G+A +G  + AL  F  +
Sbjct: 236 GNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEM 295

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-INEYNITPVLEHYGCLVDLLARA 389
              E+  P+    VGV SAC+  G +  G     +M  +E+   PVL     L+D  A+ 
Sbjct: 296 -QRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGT--ALIDFYAKC 352

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G++ +A  +   M  K D V++ +++  
Sbjct: 353 GSVAQAKEVFKGMRRK-DCVVFNAVISG 379


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 339/607 (55%), Gaps = 18/607 (2%)

Query: 14   QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSM----SQLKQIHAQALRTALPQQHKTLL 69
            +  S ++F +  +EG   +H +L S L  C S+    +  +QIH  AL+T       + +
Sbjct: 986  EEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTG--NIADSFV 1043

Query: 70   IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
              + I  ++    ++ A  +F   ++ +   WN ++       D K +A+ LF  +I + 
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGK-KALELFS-LIHKS 1101

Query: 130  NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
                D+ T   A KAC  L    QGKQ HAH  K G  SD+++N+ ++  Y  CG +  A
Sbjct: 1102 GEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA 1161

Query: 190  NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL 248
              VF+ +     V+W  MI   V  G  D AL+++ RM Q    PD YTF ++  A + +
Sbjct: 1162 GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCV 1221

Query: 249  ATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
              L  G   HA +++  C    V+D  V  SL+DMY KCG+++ A ++F+ M  R++  W
Sbjct: 1222 TALEQGRQLHANVIKLDC----VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 1277

Query: 308  NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            N++++G A HG AE A+  F + +      P+ ++F+G+LSAC+H G+ SE  +Y   M 
Sbjct: 1278 NAMLVGLAQHGNAEEAVNLF-KSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 1336

Query: 368  NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            N+Y I P +EHY CLVD L RAG + EA  ++  MP K  A I R+LL AC +    V  
Sbjct: 1337 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGAC-RIQGDVET 1395

Query: 428  SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
             + VA ++   E    S  YVLLS +YA+A RW+DV   RK+M  K V K+PG S I++ 
Sbjct: 1396 GKRVAARLFALEP-FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVK 1454

Query: 488  GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
             + H F   D SHPQ   IY  ++ + + ++  GY PD ++  ++D  D+ K+ SL  HS
Sbjct: 1455 NMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPD-TEFVLLDVEDEEKERSLYYHS 1513

Query: 548  ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
            E+LAIA G+++      IRV KNLRVC DCH   K IS++F  EI++RD  RFHHF+DG 
Sbjct: 1514 EKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGV 1573

Query: 608  CSCMDYW 614
            CSC DYW
Sbjct: 1574 CSCGDYW 1580



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 14/338 (4%)

Query: 85   YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            YA ++    +NP+ F WN  +  C  + D    AI  F  M    N+  D  T    L A
Sbjct: 856  YAAKLSLSDDNPDVFCWNKKLSECLWAGD-NWGAIECFVNM-NGLNIDYDAVTLLVVLAA 913

Query: 145  CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
             A       GKQ H    K GL SDV + NSL++ Y+  G    A +VF++M    L+SW
Sbjct: 914  VAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISW 973

Query: 205  NVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLAT-LSLGMWAHAY 260
            N MI +  Q    + ++ LF  + +L E   PD +T  S+  AC+ L   L++    H +
Sbjct: 974  NSMISSCAQSSLEEESVNLF--IDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVH 1031

Query: 261  ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
             L+  +   + D  V  +LID+Y K G ++ A  +F++    DL  WN+++ G+ +    
Sbjct: 1032 ALKTGN---IADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDG 1088

Query: 321  EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
            + AL+ F  L+ +     + IT      AC    ++ +G+      I     + +  + G
Sbjct: 1089 KKALELFS-LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG 1147

Query: 381  CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
             L D+  + G++  A  +V N    PD V W S++  C
Sbjct: 1148 IL-DMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 1183



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 9/180 (5%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV- 212
           GK  HA I   G   D +++N+L+  Y+ CG L  A +VFD   ER LV+WN ++ A+  
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 213 ----QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
                 G     L LFR ++  L      T   +   C     L      H Y ++    
Sbjct: 700 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI--- 756

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L  DV V+ +L+++Y KCG +  AR +F+ M +RD+  WN ++ G+   G  + A + F
Sbjct: 757 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 816



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK----PQAIVLFQRMIEQGNVL 132
           ++    L  A +VF      +  TWN ++ A A SVD+      + + LF R++      
Sbjct: 666 YSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGS 724

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
             + T    LK C         +  H +  K GL  DV+++ +L++ Y+ CG +  A  +
Sbjct: 725 TTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLL 784

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
           FD M ER +V WN+M+  +VQ G    A +LF    +    PD ++ Q I +  +
Sbjct: 785 FDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 251 LSLGMWAHAYILRHCDHSLVT------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           L   +  H  +L  C H+ +       D  ++N+L+ MY KCGSL  ARQVF++ P+RDL
Sbjct: 628 LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 687

Query: 305 TSWNSIILGFAL-----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV--S 357
            +WN+I+  +A       G A+  L  F RL+     S   +T   VL  C + G +  +
Sbjct: 688 VTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 358 EGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           EG   + + I  E+++       G LV++ ++ G + +A  L   M  + D V+W  +L
Sbjct: 747 EGVHGYAIKIGLEWDVFVS----GALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMML 800


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 333/600 (55%), Gaps = 23/600 (3%)

Query: 25   RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQ----QHKTLLIYSRIIHF 77
            R  GS  ++ +L+S+L+ C S+  +   +QIH   L+  L       +  L +Y+    F
Sbjct: 953  RRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCF 1012

Query: 78   ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
                      +VF  +   +  +WN++I A + S  +  QA+  F  M+  G  L  + T
Sbjct: 1013 TE------CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGL-SRVT 1065

Query: 138  FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
            F   L A + L       Q HA + K  L  D  I N+L+  Y  CG ++   K+F  M 
Sbjct: 1066 FINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMS 1125

Query: 198  E-RSLVSWNVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLSLGM 255
            E R  VSWN MI  ++       A+ L +  MQ     D +TF ++ SACA +ATL  GM
Sbjct: 1126 ETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGM 1185

Query: 256  WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
              HA  +R C   + +DV+V ++L+DMY KCG +D A + FE MP R++ SWNS+I G+A
Sbjct: 1186 EVHACGIRAC---MESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYA 1242

Query: 316  LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             HG  E ALK F R++++     +    +GVLSAC+H G V EG ++F  M   Y ++P 
Sbjct: 1243 RHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPR 1302

Query: 376  LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEEVAKQ 434
            +EH+ C+VDLL RAG +DE    +++MPMKP+ +IWR++L ACC+ +  +  L    A+ 
Sbjct: 1303 VEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEM 1362

Query: 435  VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
            ++E E       YVLL+ +YAS  +W DV   R  M +  V KE GCS + +    H F 
Sbjct: 1363 LLELEPQNAVN-YVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFV 1421

Query: 495  AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
            AGD  HP+   IY  L  ++ K++  GY P  ++ A+ D   + K+  L  HSE++A+A 
Sbjct: 1422 AGDKLHPEKDXIYDKLRELNRKMRDAGYIPQ-TKYALFDLELENKEELLSYHSEKIAVAF 1480

Query: 555  GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             +L  +  +PIR+ KNLRVC DCH     IS+I   +I++RD  RFHHF+DG CSC DYW
Sbjct: 1481 -VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 34/389 (8%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           + +++H Q+++         L + + +I+ +    DL  A ++F ++ N N  TW  LI 
Sbjct: 562 EARELHLQSIKYGFV---GNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLIS 618

Query: 107 ACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKAC--AYLFAFSQGKQAHAHIFK 163
              +  + KP +A   F+ M+  G  +P+ + F  AL+AC  +       G Q H  I K
Sbjct: 619 GYTQ--NGKPDEACARFRDMVRAG-FIPNHYAFGSALRACQESGPSGCKLGVQIHGLISK 675

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLAN---KVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
               SDV + N LI  Y SC  LD AN    VFD +  R+ +SWN +I  + + G+  SA
Sbjct: 676 TRYGSDVVVCNVLISMYGSC--LDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSA 733

Query: 221 LKLFRRMQ-----ILFEPDGYTFQS-ITSACAGLATLSLGMWAHAYILRHCDHS-LVTDV 273
             LF  MQ       F+P+ YTF S IT+AC   +++  G+     +L   + S  + D+
Sbjct: 734 YDLFSSMQKEGLGFSFKPNEYTFGSLITAAC---SSVDFGLCVLEQMLARVEKSGFLQDL 790

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V ++L+  + + G  D A+ +FE M  R++ S N +++G     + EAA K F  +  +
Sbjct: 791 YVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM--K 848

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRD-----YFDVMINEYNITPVLEHYGCLVDLLAR 388
           +    NS ++V +LSA +   ++ EGR      +  V+    N   V    G LV++ A+
Sbjct: 849 DLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG-LVNMYAK 907

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +G I +A  +   M ++ D+V W SL+  
Sbjct: 908 SGAIADACSVFELM-VEKDSVSWNSLISG 935



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 170/348 (48%), Gaps = 13/348 (3%)

Query: 86   AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG---NVLPDKHTF-PFA 141
            A  VF +I   NS +WN++I   +R  D    A  LF  M ++G   +  P+++TF    
Sbjct: 702  ARSVFDRIGIRNSISWNSIISVYSRRGDX-VSAYDLFSSMQKEGLGFSFKPNEYTFGSLI 760

Query: 142  LKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
              AC+ + F     +Q  A + K G + D+Y+ ++L+  +A  G  D A  +F+ M  R+
Sbjct: 761  TAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRN 820

Query: 201  LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
            +VS N ++   V+  + ++A K+F  M+ L   +  ++  + SA +  + L  G      
Sbjct: 821  VVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGRE 880

Query: 261  ILRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            +  H   + + D  V + N L++MY K G++  A  VFE M ++D  SWNS+I G   + 
Sbjct: 881  VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNE 940

Query: 319  RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLE 377
             +E A + F R+    S  P++ T +  LS+C   G +  G   + D +  +  +   + 
Sbjct: 941  CSEDAAESFLRMRRTGSM-PSNFTLISTLSSCASLGWIMLGEQIHCDGL--KLGLDTDVS 997

Query: 378  HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
                L+ L A  G   E L + S MP + D V W S++ A     ASV
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGALSDSEASV 1044


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 334/614 (54%), Gaps = 15/614 (2%)

Query: 5   IVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTAL 61
           +V  G  +    S  IF   +  G   N  +    L  C    Q++   QIH+ +++   
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 62  PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVL 121
                   +   I  ++ +  LD A ++   +E  +  +W ++I    +  D   +A+  
Sbjct: 378 ESDMYVSGVL--IDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQH-DFCEEALAT 434

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F+ M + G V PD      A  ACA + A  QG Q HA ++  G  +D+ I N+L++ YA
Sbjct: 435 FKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYA 493

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            CG  + A  +F  +  +  ++WN +I  F Q   ++ AL +F +M Q   + + +TF S
Sbjct: 494 RCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFIS 553

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             SA A LA +  G   H   ++   H+  T+V   N+LI +Y KCGS++ A+ +F  M 
Sbjct: 554 AISALANLADIKQGKQVHGRAVK-TGHTSETEV--ANALISLYGKCGSIEDAKMIFSEMS 610

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            R+  SWN+II   + HGR   AL  FD++  +E   PN +TF+GVL+AC+H G+V EG 
Sbjct: 611 LRNEVSWNTIITSCSQHGRGLEALDLFDQMK-QEGLKPNDVTFIGVLAACSHVGLVEEGL 669

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            YF  M N Y + P+ +HY C+VD+L RAG +D A   V  MP+  +A+IWR+LL A CK
Sbjct: 670 SYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSA-CK 728

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H ++ + E  AK ++E E    S  YVLLS  YA   +W +   VRK+M D+G+ KEPG
Sbjct: 729 VHKNIEIGELAAKHLLELEPHD-SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPG 787

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S IE+    H FF GD  HP + QIY FL  ++++L   GY  +        E  + K 
Sbjct: 788 RSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKE-QEQKD 846

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +  +HSE+LA+A G++ L P +P+RV KNLRVC DCH   K  S +   EI++RD  RF
Sbjct: 847 PTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRF 906

Query: 601 HHFKDGSCSCMDYW 614
           HHF  GSCSC DYW
Sbjct: 907 HHFNSGSCSCGDYW 920



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 157/331 (47%), Gaps = 9/331 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +VF ++ + +  +W  ++   A+    K +A  L+ +M     V+P  +     L AC
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQRGLGK-EAFRLYSQM-HWTAVIPTPYVLSSVLSAC 154

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
                F+QG+  HA ++K+   S+ ++ N+LI  Y   G   LA +VF +ML    V++N
Sbjct: 155 TKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFN 214

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I    Q G  + AL++F  MQ+    PD  T  S+ +ACA +  L  G   H+Y+L+ 
Sbjct: 215 TLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK- 273

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               +  D +   SL+D+Y KCG ++ A  +F    + ++  WN +++ +        + 
Sbjct: 274 --AGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           + F ++       PN  T+  +L  C   G +  G     + I        +   G L+D
Sbjct: 332 EIFGQMQA-TGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKN-GFESDMYVSGVLID 389

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + ++   +D+A  ++  M  K D V W S++
Sbjct: 390 MYSKYRCLDKARKIL-EMLEKRDVVSWTSMI 419



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 9/264 (3%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           + HA    RGL +D  I N LI  YA  G +  A +VF  +  R  VSW  M+  + Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 216 EFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
               A +L+ +M      P  Y   S+ SAC      + G   HA + +    +  ++  
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYK---QAFCSETF 180

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V N+LI +Y   GS  +A +VF  M   D  ++N++I G A  G  E AL+ FD + +  
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQL-S 239

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNID 393
              P+ +T   +L+AC   G + +G+     ++    +   + E  G L+DL  + G+I+
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIE 297

Query: 394 EALHLVSNMPMKPDAVIWRSLLDA 417
            A H + N+  + + V+W  +L A
Sbjct: 298 TA-HDIFNLGDRTNVVLWNLMLVA 320


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 313/546 (57%), Gaps = 16/546 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +A+   +  A +VF  + +       WN +I   A++     +A+ LF RM  +   +P 
Sbjct: 165 YATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA-GMDEEALRLFARMEAEAGFVPC 223

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T    L ACA   AF+  +  H ++ KRG+  + ++ N+L+  YA  G  D+A ++F 
Sbjct: 224 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 283

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAGLAT 250
            +    +VSWN +I   V  G    A +L R MQ L E    P+  T  ++   CA LA 
Sbjct: 284 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 343

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
            + G   H Y +RH   +L TDV V ++L+DMY KCG L ++R VF+ +P+R+  +WN +
Sbjct: 344 PARGKEIHGYAVRH---ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 400

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+ + +HG    A   FDR+       PN +TF+  L+AC+H GMV  G   F  M  ++
Sbjct: 401 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 460

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKKHASVVLSE 429
            + P  +   C+VD+L RAG +DEA  +V++M      V  W ++L A C+ H +V L  
Sbjct: 461 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA-CRLHRNVHLG- 518

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
           E+A + +       +  YVLL  +Y++A +W     VR  M  +GV KEPGCS IE+DG 
Sbjct: 519 EIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGA 578

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSE 548
            H F AG+++HP +++++  ++ +  ++ +RGYTPD S   ++ ++DDG K + LR HSE
Sbjct: 579 IHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTS--CVLHDMDDGDKAAVLRCHSE 636

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA G+L   PG  IRV KNLRVC DCHE  K +S++   EI++RD  RFHHF++G C
Sbjct: 637 KLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQC 696

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 697 SCGDYW 702



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 17/327 (5%)

Query: 137 TFPFALKACAYLFAFSQ----GKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLAN 190
           T    L+A ++L A +     G++AHA   K GL+     +  N+L+  YA  G +  A 
Sbjct: 12  TLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQ 71

Query: 191 KVFDNML--ERSLVSWNVMIDAFVQFGEFDSALK-LFRRMQILFEPDGYTFQSITSACAG 247
           ++F         +V+WN M+   VQ G FD A++ L+  + +   PDG TF S   AC+ 
Sbjct: 72  RLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSR 131

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLT 305
           L  L +G   HAY+++  D  L  +  V ++L+DMY     +  ARQVF+ +P   + L 
Sbjct: 132 LELLDVGREMHAYVIK--DDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLG 189

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
            WN++I G+A  G  E AL+ F R+  E  F P   T   VL AC  R     G++    
Sbjct: 190 MWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA-RSEAFAGKEAVHG 248

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
            + +  +         L+D+ AR G  D A  + + + + PD V W +L+  C  +   V
Sbjct: 249 YVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQ-GHV 306

Query: 426 VLSEEVAKQVIE-SEGGICSGVYVLLS 451
             + ++A+++ +  EGG+      L++
Sbjct: 307 ADAFQLAREMQQLEEGGVVPNAITLMT 333



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 179/381 (46%), Gaps = 24/381 (6%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE--NPNSFTWNTLIRA 107
           ++ HA AL+  L   H+     + +  +A    +  A R+F        +  TWNT++  
Sbjct: 34  REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 93

Query: 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG-L 166
             +S     +A+     M+  G V PD  TF  AL AC+ L     G++ HA++ K   L
Sbjct: 94  LVQS-GMFDEAVQTLYDMVALG-VRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 151

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLF 224
            ++ ++ ++L+  YA+   +  A +VFD + +  + L  WN MI  + Q G  + AL+LF
Sbjct: 152 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 211

Query: 225 RRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
            RM+    F P   T  S+  ACA     +     H Y+++     +  +  V N+L+DM
Sbjct: 212 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK---RGMAGNRFVQNALMDM 268

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL--VVEESFSPNS 340
           Y + G  D+AR++F  +   D+ SWN++I G  + G    A +    +  + E    PN+
Sbjct: 269 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNA 328

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAGNIDEAL 396
           IT + +L  C      + G++     I+ Y +   L+        LVD+ A+ G +  + 
Sbjct: 329 ITLMTLLPGCAILAAPARGKE-----IHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 383

Query: 397 HLVSNMPMKPDAVIWRSLLDA 417
            +   +P + + + W  L+ A
Sbjct: 384 AVFDRLPRR-NTITWNVLIMA 403


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 331/584 (56%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           + + +++  + K++   ++IH     +    +    L  S I  +     +  A +VF +
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRF--EGDAFLDNSLIHLYCKCGSVVEAHKVFDK 111

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  +W +LI   A++ D   +AI L   M+ +G   P+  TF   LKA        
Sbjct: 112 MRKKDMVSWTSLIAGYAQN-DMPAEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSG 169

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G Q HA   K     DVY+ ++L+  YA CG +D+A  VFD +  ++ VSWN +I  F 
Sbjct: 170 IGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 213 QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + G+ ++AL +F  MQ   FE   +T+ SI S  AG+  L  G W HA++++        
Sbjct: 230 RKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQK---L 286

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              V N+++DMY K GS+  AR+VFE +  +DL +WNS++  FA +G  + A+ +F+ + 
Sbjct: 287 TAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMR 346

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +     N ITF+ +L+AC+H G+V EG+ YFD MI EYN+ P +EHY  +VDLL RAG 
Sbjct: 347 -KSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGL 404

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++ AL  +  MPM+P A +W +LL A C+ H +  + +  A  V + +    SG  VLL 
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALL-AACRMHKNAKVGQFAADHVFQLDPDD-SGPPVLLY 462

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YAS   W+    VRK+M   GV KEP CS +EI    H F A D +HP+ ++IY   D
Sbjct: 463 NIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWD 522

Query: 512 LIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
            I  K++  GY PD     + VDE +  ++++L+ HSE++A+A  ++ +  G  IR+ KN
Sbjct: 523 EISMKIRKEGYVPDMDYVLLHVDEQE--REANLQYHSEKIALAFALIQMPAGATIRIMKN 580

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+C DCH   K IS++F  EI+VRD  RFHHF +GSCSC DYW
Sbjct: 581 IRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           ++ G + P    +   + ACA        ++ H H+       D +++NSLIH Y  CG 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGS 101

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
           +  A+KVFD M ++ +VSW  +I  + Q      A+ L   M +  F+P+G+TF S+  A
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
               A   +G   HA  ++ CD     DV V ++L+DMY +CG +D+A  VF+ +  ++ 
Sbjct: 162 AGAYADSGIGGQIHALAVK-CDWH--EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG 218

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            SWN++I GFA  G  E AL  F  +     F     T+  + S     G + +G+    
Sbjct: 219 VSWNALISGFARKGDGETALMVFAEM-QRNGFEATHFTYSSIFSGLAGIGALEQGKWVHA 277

Query: 365 VMI-NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            M+ +   +T  + +   ++D+ A++G++ +A  +   + +  D V W S+L A
Sbjct: 278 HMVKSRQKLTAFVGN--TMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTA 328


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 335/592 (56%), Gaps = 31/592 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S+L +  E  + +  + +HA   +  L Q     ++   I  +A   D++ A  +F ++
Sbjct: 225 ASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEH--VVTGLISLYAKCGDMECARHLFDRM 282

Query: 94  ENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQGNVLPDKHTF--------PFALKA 144
           E P+  T+N LI     S++     ++ LF+ ++  G + P   T         PF  + 
Sbjct: 283 EGPDLVTYNALISG--YSINGMVGSSVELFKELVGMG-LRPSSSTLVALIPVHSPFGHEP 339

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
            A           HAH+ K GL ++  ++ +L   Y     +D A + FD M E+++ SW
Sbjct: 340 LAGCL--------HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESW 391

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N MI  + Q G  + A+ LF++MQ L   P+  T  S  SACA L  LSLG W H  I  
Sbjct: 392 NAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKII-- 449

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
             +  L  +V V  +LIDMY KCGS+  AR +F+SM  +++ SWN +I G+ LHG+   A
Sbjct: 450 -ANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEA 508

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           LK +  ++ +    P S TF+ VL AC+H G+V EG   F  M ++Y ITP +EH  C+V
Sbjct: 509 LKLYKDMM-DAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMV 567

Query: 384 DLLARAGNIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           DLL RAG + EA  L+S  P       IW +LL AC   H    L++  ++++ E E   
Sbjct: 568 DLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGAC-MVHKDGDLAKLASQKLFELEPE- 625

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G YVLLS +Y S +++++  +VR+    + + K PGC+ IEI    H F AGD +HPQ
Sbjct: 626 NTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQ 685

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           +  IY +L+ +  K+   GY PD ++AA+ D  ++ K+  +++HSE+LAIA G+LN +PG
Sbjct: 686 SDAIYLYLEKLTAKMIEAGYRPD-TEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPG 744

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             IR+ KNLRVC DCH  TK+IS++    I+VRD +RFHHF+DG CSC DYW
Sbjct: 745 TEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 165/339 (48%), Gaps = 24/339 (7%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +VF  + +P++  WNTL+   + S     +A+  F RM   G+V PD  T    L A 
Sbjct: 177 ARKVFDAVPSPDTVLWNTLLAGLSGS-----EALEAFVRMAGAGSVRPDSTTLASVLPAA 231

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A +   + G+  HA   K GL    ++   LI  YA CG ++ A  +FD M    LV++N
Sbjct: 232 AEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYN 291

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  +   G   S+++LF+ +  +   P   T  ++    +      L    HA++++ 
Sbjct: 292 ALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVK- 350

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L  +  V+ +L  +YC+   +D AR+ F++MP++ + SWN++I G+A +G  E A+
Sbjct: 351 --AGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAV 408

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE------YNITPVLEH 378
             F ++    +  PN +T    LSAC   G +S G+    ++ NE      Y +T     
Sbjct: 409 ALFQQMQA-LNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMT----- 462

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              L+D+  + G+I EA  +  +M  K + V W  ++  
Sbjct: 463 --ALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVMISG 498



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 170/417 (40%), Gaps = 74/417 (17%)

Query: 55  QALRTALPQQHKTL---LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           Q L  +L   H TL      S ++ +AS  +   +  R++     P+ F  N+L+R+   
Sbjct: 42  QLLAVSLASGHYTLDHAPASSLLLRYASLRSPPAHLLRLYRAFPRPDRFLRNSLLRSLP- 100

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG------------KQAH 158
                 +A +LF          P   +F FA  A +   + S+G            +  H
Sbjct: 101 ----TLRADLLF----------PSPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLH 146

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
           A     G  +D ++ ++L   Y +    + A KVFD +     V WN ++          
Sbjct: 147 ALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL----SGS 202

Query: 219 SALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
            AL+ F RM       PD  T  S+  A A +A  ++G   HA+  + C   L     V 
Sbjct: 203 EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEK-C--GLAQHEHVV 259

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
             LI +Y KCG ++ AR +F+ M   DL ++N++I G++++G   ++++ F  L V    
Sbjct: 260 TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKEL-VGMGL 318

Query: 337 SPNSITFVGV-----------LSACNHRGMVSEGRDY-----------------FDVMIN 368
            P+S T V +           L+ C H  +V  G D                   D    
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARR 378

Query: 369 EYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRSLLDACCK 420
            ++  P   +E +  ++   A+ G  + A+ L   M    ++P+ +   S L AC +
Sbjct: 379 AFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQ 435


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/487 (43%), Positives = 304/487 (62%), Gaps = 37/487 (7%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASC--GHLDLANKVFDNML------------------ 197
           H    K G+ S  Y+ N+++  Y+ C  G L+LA K+FD M                   
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 198 --------ERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL 248
                   E+ +V+WN +I+ F   G+ + AL L++RM     EPDG+T  S+ SACA L
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSW 307
           ATL LG  AH Y+++     L  ++  NN+L+D+Y KCG++  AR++F+ M  +R++ SW
Sbjct: 121 ATLVLGRRAHVYMVKV---GLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSW 177

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            S+I+G A++G  + AL++F  +   E   P+ ITFVGVL AC+H G+V+EG +YF  M 
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDME-REGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMK 236

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            +Y+I P +EHYGC+VDLL RAG + EA   + +MP++P+AVIWR+LL AC   H  + L
Sbjct: 237 EQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGAC-TIHGHLGL 295

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
                 ++++ E    SG YVLLS +YAS +RW+DV  VR+ M  +GV K PG S +E+ 
Sbjct: 296 GAFARARLLQLEPKD-SGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELG 354

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
              HEF  GD +HPQ++ IY  L  +  KLK  GY P ++   + D  ++ K+S+L  HS
Sbjct: 355 NHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVP-HTANVLADIEEEEKESALFYHS 413

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           E++AIA  ++N  PG PIR+ KNLRVC DCH   KLIS++F  +I+VRD +RFHHF+DGS
Sbjct: 414 EKIAIAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGS 473

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 474 CSCRDYW 480



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 11/243 (4%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFP 139
           A  + A++VF  +   +   WN++I   A  ++ KP +A+ L++RM  +G V PD  T  
Sbjct: 55  AYFESAYKVFELMPEKDIVAWNSVINGFA--LNGKPNEALTLYKRMGSEG-VEPDGFTMV 111

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LE 198
             L ACA L     G++AH ++ K GL  +++ NN+L+  YA CG +  A K+FD M +E
Sbjct: 112 SLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIE 171

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           R++VSW  +I      G    AL+ F+ M+     P   TF  +  AC+    ++ G   
Sbjct: 172 RNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGF-- 229

Query: 258 HAYILRHCD-HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFA 315
             Y  R  + + +V  +     ++D+  + G L  A    + MP + +   W +++    
Sbjct: 230 -EYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACT 288

Query: 316 LHG 318
           +HG
Sbjct: 289 IHG 291


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/630 (36%), Positives = 341/630 (54%), Gaps = 71/630 (11%)

Query: 36  LLSSLTECK-SMSQLKQIHAQ------ALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           LL +L   + ++  + Q HA+      A   ALPQ    L    R+   A+     Y   
Sbjct: 28  LLGALLPPRPALYHVLQAHARLAVLGLATARALPQ---LLAALPRLTLAAADVSHSYPLL 84

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK----- 143
           +F      ++F  N L+R     V   P  + LF R+  +     + H+F F L      
Sbjct: 85  LFRCSNCTSAFASNHLLR-----VLPHPLPLRLFPRLPRR-----NPHSFTFLLASLSNH 134

Query: 144 ------ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL----------- 186
                 A   + +   G   HA   K G   D+Y+ N+ IHFY  CG +           
Sbjct: 135 LDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELP 194

Query: 187 ---------------------DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
                                 +A +VFD M  R  VSW+ +I  +V+ GE + AL +F+
Sbjct: 195 IVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFK 254

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            M     + +     +  SA A L  L  G + H  + R     +   V +  +LIDMY 
Sbjct: 255 NMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRV---GMTMSVNLGAALIDMYS 311

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCGS+  A++VF++MP+RD+ +WNS+I G A HG    A++ F++ V  E F P SITFV
Sbjct: 312 KCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFV-SEGFCPTSITFV 370

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVL+AC+  G+V EGR YF +M  +Y+I   +EHYGC+VDLL+RAG + EA+ L+  M +
Sbjct: 371 GVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRI 430

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
            PD V+W ++L AC K+H  V L   V  ++IE +     G YVLL+ +YA A++W++V 
Sbjct: 431 PPDPVLWGTILSAC-KRHGLVDLGITVGNKLIELDPA-HDGYYVLLASIYAKAKKWDEVR 488

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            VRKLM+++G +K  G S +E  GI H+F  GD +H  + +IY  L  I+ +L   GY P
Sbjct: 489 KVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVP 548

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           D S + + D  D+ K  ++++HSERLAIA G + ++ G PIR+ KNL VC DCHE +K++
Sbjct: 549 DVS-SVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMV 607

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +++F  EI+VRD +RFHH KDG CSC DYW
Sbjct: 608 TKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 342/575 (59%), Gaps = 21/575 (3%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIENPNSFTWNTL 104
           + +L+Q HA  + T     H++  + ++++  +  A  + Y  R+F  + +P+SF +N+L
Sbjct: 23  LRRLQQAHAHLVVTGC---HRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSL 79

Query: 105 IRACAR---SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           I+A +    S+DA     V F R +    ++P  +TF   +KACA L     G   H+H+
Sbjct: 80  IKASSNFGFSLDA-----VFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHV 134

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
           F  G  S+ ++  +L+ FYA      +A KVFD M +RS+++WN MI  + Q G    A+
Sbjct: 135 FVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAV 194

Query: 222 KLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           ++F +M +   EPD  TF S+ SAC+ L +L LG W H  I+      +  +V++  SL+
Sbjct: 195 EVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIV---GTGIRMNVVLATSLV 251

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           +M+ +CG +  AR VF+SM + ++ SW ++I G+ +HG    A++ F R+       PN 
Sbjct: 252 NMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKAC-GVVPNR 310

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +T+V VLSAC H G+++EGR  F  M  EY + P +EH+ C+VD+  R G ++EA   V 
Sbjct: 311 VTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVR 370

Query: 401 NMPMKPDA-VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
            +  +     +W ++L AC K H +  L  EVA+ +I +E     G YVLLS +YA A R
Sbjct: 371 GLSSEELVPAVWTAMLGAC-KMHKNFDLGVEVAENLISAEPEN-PGHYVLLSNMYALAGR 428

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
            + V  VR +M  +G+ K+ G S+I+++  ++ F  GD SHP+T +IY +LD +  + K 
Sbjct: 429 MDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKD 488

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GY P   ++AM +  ++ ++ +LR HSE+LA+A G++    G+ +R+ KNLR+C+DCH 
Sbjct: 489 AGYAPA-PESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHS 547

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             K IS + N EIIVRD+ RFHHF++GSCSC DYW
Sbjct: 548 AIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 311/535 (58%), Gaps = 14/535 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D   RVF  +   +  ++NT+I   A+S     +  +   R +   ++ PD  T    L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQS--GMYEDALRMVREMGTTDLKPDSFTLSSVL 249

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
              +      +GK+ H ++ ++G+ SDVYI +SL+  YA    ++ + +VF  +  R  +
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN ++  +VQ G ++ AL+LFR+M     +P    F S+  ACA LATL LG   H Y+
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           LR       +++ + ++L+DMY KCG++  AR++F+ M   D  SW +II+G ALHG   
Sbjct: 370 LRG---GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGH 426

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F+ +   +   PN + FV VL+AC+H G+V E   YF+ M   Y +   LEHY  
Sbjct: 427 EAVSLFEEMK-RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESE 439
           + DLL RAG ++EA + +S M ++P   +W +LL +C   H ++ L+E+VA+++  ++SE
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC-SVHKNLELAEKVAEKIFTVDSE 544

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
                G YVL+  +YAS  RW ++  +R  M  KG+ K+P CS IE+    H F +GD S
Sbjct: 545 N---MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS 601

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP   +I  FL  + E+++  GY  D S   + D  ++ K+  L  HSERLA+A GI+N 
Sbjct: 602 HPSMDKINEFLKAVMEQMEKEGYVADTS-GVLHDVDEEHKRELLFGHSERLAVAFGIINT 660

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +PG  IRV KN+R+C DCH   K IS+I   EIIVRD +RFHHF  G+CSC DYW
Sbjct: 661 EPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 203/444 (45%), Gaps = 53/444 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRT-ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +L+ + T  KS SQ KQ+HAQ +RT +L     +++I      + +   L  A  +F  +
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISI----YTNLKLLHEALLLFKTL 65

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           ++P    W ++IR C        +A+  F  M   G   PD + FP  LK+C  +     
Sbjct: 66  KSPPVLAWKSVIR-CFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRF 123

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYA---------SCGH------------------- 185
           G+  H  I + G+  D+Y  N+L++ YA         S G+                   
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKA 183

Query: 186 --------LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236
                   +D   +VF+ M  + +VS+N +I  + Q G ++ AL++ R M     +PD +
Sbjct: 184 ETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSF 243

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T  S+    +    +  G   H Y++R     + +DV + +SL+DMY K   ++ + +VF
Sbjct: 244 TLSSVLPIFSEYVDVIKGKEIHGYVIR---KGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
             +  RD  SWNS++ G+  +GR   AL+ F R +V     P ++ F  V+ AC H   +
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLF-RQMVTAKVKPGAVAFSSVIPACAHLATL 359

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
             G+     ++     + +      LVD+ ++ GNI  A  +   M +  D V W +++ 
Sbjct: 360 HLGKQLHGYVLRGGFGSNIFI-ASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIM 417

Query: 417 ACC---KKHASVVLSEEVAKQVIE 437
                   H +V L EE+ +Q ++
Sbjct: 418 GHALHGHGHEAVSLFEEMKRQGVK 441



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 152/323 (47%), Gaps = 10/323 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           SS+L   +E   + + K+IH   +R  +      + I S ++  +A  A ++ + RVF +
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSD---VYIGSSLVDMYAKSARIEDSERVFSR 302

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  +WN+L+    ++     +A+ LF++M+    V P    F   + ACA+L    
Sbjct: 303 LYCRDGISWNSLVAGYVQN-GRYNEALRLFRQMV-TAKVKPGAVAFSSVIPACAHLATLH 360

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GKQ H ++ + G  S+++I ++L+  Y+ CG++  A K+FD M     VSW  +I    
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHA 420

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G    A+ LF  M+    +P+   F ++ +AC+ +  +    W +   +    + L  
Sbjct: 421 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA-WGYFNSMTKV-YGLNQ 478

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAEAALKYFDRL 330
           ++    ++ D+  + G L+ A      M      S W++++   ++H   E A K  +++
Sbjct: 479 ELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKI 538

Query: 331 VVEESFSPNSITFVGVLSACNHR 353
              +S +  +   +  + A N R
Sbjct: 539 FTVDSENMGAYVLMCNMYASNGR 561


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 345/592 (58%), Gaps = 16/592 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFAD-LD 84
           E  F+ + +LL++  + +++ + +++HA  ++T  LP  +    + +R++ F    D L+
Sbjct: 48  EIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATY----LRTRLLIFYGKCDCLE 103

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A +V  ++   N  +W  +I   +++  +  +A+ +F  M+ + +  P++ TF   L +
Sbjct: 104 DARKVLDEMPEKNVVSWTAMISRYSQTGHSS-EALSVFAEMM-RSDGKPNEFTFATVLTS 161

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C      + GKQ H  I K    S +++ +SL+  YA  G ++ A ++F+ + ER +VS 
Sbjct: 162 CIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSC 221

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
             +I  + Q G  + AL++F+R+Q     P+  T+ S+ +A +GLA L  G  AH ++LR
Sbjct: 222 TAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLR 281

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                L    ++ NSLIDMY KCG+L  A+++F++MP+R   SWN++++G++ HG     
Sbjct: 282 R---ELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREV 338

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NEYNITPVLEHYGCL 382
           L+ F  +  E+   P+++T + VLS C+H  M   G   +D M+  EY I P  EHYGC+
Sbjct: 339 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCI 398

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VD+L RAG IDEA   +  MP KP A +  SLL AC + H SV + E V  ++IE E   
Sbjct: 399 VDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGAC-RVHLSVDIGEYVGHRLIEIEPE- 456

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G YV+LS +YASA RW DV  VR +M  K VTKEPG S I+ +   H F A D +HP+
Sbjct: 457 NAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPR 516

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            +++   +  I  K+K  GY PD S   + D  ++ K+  L  HSE+LA+  G++    G
Sbjct: 517 REEVLAKMKEISIKMKQAGYVPDIS-CVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEG 575

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +PIRVFKNLR+C DCH   K+ S++F  E+ +RD+ RFH    G CSC DYW
Sbjct: 576 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 354/604 (58%), Gaps = 22/604 (3%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR 73
           Q H H +      +  F ++  + S L +  S + L     QA    +P+  K +++Y+ 
Sbjct: 163 QVHGHVV------KFGFQSYVFVGSPLVDMYSKTGLVFCARQAF-DEMPE--KNVVMYNT 213

Query: 74  IIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           +I      + ++ + ++FY ++  +S +W  +I    ++     +AI LF+ M  + N+ 
Sbjct: 214 LIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQN-GLDREAIDLFREMRLE-NLE 271

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
            D++TF   L AC  + A  +GKQ HA+I +     ++++ ++L+  Y  C  +  A  V
Sbjct: 272 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETV 331

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATL 251
           F  M  +++VSW  M+  + Q G  + A+K+F  MQ    EPD +T  S+ S+CA LA+L
Sbjct: 332 FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASL 391

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             G   H    R     L++ + V+N+L+ +Y KCGS++ + ++F  M   D  SW +++
Sbjct: 392 EEGAQFHC---RALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALV 448

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+A  G+A   L+ F+ ++    F P+ +TF+GVLSAC+  G+V +G   F+ MI E+ 
Sbjct: 449 SGYAQFGKANETLRLFESMLAH-GFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHR 507

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P+ +HY C++DL +RAG ++EA   ++ MP  PDA+ W SLL +C + H ++ + +  
Sbjct: 508 IIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSC-RFHRNMEIGKWA 566

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A+ +++ E    +  Y+LLS +YA+  +W +V  +RK M DKG+ KEPGCS I+     H
Sbjct: 567 AESLLKLEPH-NTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVH 625

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ-SSLRLHSERL 550
            F A D S+P + QIY  L+ ++ K+   GY PD +  +++ ++DD ++   L  HSE+L
Sbjct: 626 IFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMN--SVLHDVDDSEKIKMLNHHSEKL 683

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G++ + PG+PIRV KNLRVC DCH  TK IS+I   EI+VRD ARFH FKDG CSC
Sbjct: 684 AIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSC 743

Query: 611 MDYW 614
            D+W
Sbjct: 744 GDFW 747



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 201/454 (44%), Gaps = 75/454 (16%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY 85
           N  S +NH   L  L  C+     K+IH   ++    +  +  L+ + +  +A F  + Y
Sbjct: 10  NSMSLSNHYCEL--LKHCRDT---KKIHCHIIKAF--RNPEIFLLNNLVSAYAKFDRITY 62

Query: 86  AFRVFYQIENPNSFTWNTLIR-----AC----ARSVDAKP-QAIVLFQRMIE----QGNV 131
           A RVF Q+   N ++WNTL+      AC     R   A P + +V +  +I     +G +
Sbjct: 63  ARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFL 122

Query: 132 LPDKHTF-------PFALKACAY----LFAFSQG-----KQAHAHIFKRGLVSDVYINNS 175
           L     +       PF L   A     + A  QG      Q H H+ K G  S V++ + 
Sbjct: 123 LQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSP 182

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLV-------------------------------SW 204
           L+  Y+  G +  A + FD M E+++V                               SW
Sbjct: 183 LVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISW 242

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
             MI  F Q G    A+ LFR M++   E D YTF S+ +AC G+  L  G   HAYI+R
Sbjct: 243 TAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIR 302

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
             D+    ++ V ++L+DMYCKC S+  A  VF  M  +++ SW ++++G+  +G +E A
Sbjct: 303 -TDYQ--DNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEA 359

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           +K F  +       P+  T   V+S+C +   + EG   F        +   +     LV
Sbjct: 360 VKIFCDM-QNNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALV 417

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            L  + G+I+++  L S M    D V W +L+  
Sbjct: 418 TLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSG 450


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 339/590 (57%), Gaps = 45/590 (7%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYA 86
           ++++S L  C +   L   K +H+ A++++  ++     TLL +YS+        DLD A
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC------GDLDGA 305

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKAC 145
            RVF ++   N  +W ++I    R  D +   AI L Q+M ++G V  D       L AC
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTR--DGRSDGAIKLLQQMEKEG-VKLDVVAITSILHAC 362

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   +   GK  H +I    + S++++ N+L+  YA CG ++ AN VF  M+ + ++SWN
Sbjct: 363 ARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWN 422

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            MI      GE               +PD  T   +  ACA L+ L  G   H YILR+ 
Sbjct: 423 TMI------GEL--------------KPDSRTMACVLPACASLSALERGKEIHGYILRN- 461

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                +D  V N+L+D+Y KCG L +AR +F+ +P +DL SW  +I G+ +HG    A+ 
Sbjct: 462 --GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+ +  +    P+ ++F+ +L AC+H G++ +G  +F +M N++NI P LEHY C+VDL
Sbjct: 520 TFNEMR-DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDL 578

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L+R GN+ +A   +  +P+ PDA IW +LL   C+ +  + L+E+VA++V E E    SG
Sbjct: 579 LSRTGNLSKAYEFIETLPIAPDATIWGALLCG-CRNYHDIELAEKVAERVFELEPE-NSG 636

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG-DTSHPQTK 504
            YVLL+ +YA A +W +V  +R+ +  +G+ K PGCS IEI G  + F +G ++SHP +K
Sbjct: 637 YYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSK 696

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
            I   L  +  K+K  G+ P  ++ A+++  +  K+ +L  HSE+LA+A G+L L P   
Sbjct: 697 NIESLLKKMRRKMKEEGHFPK-TKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCHE+ K +S+    EI++RD  RFHHFKDG CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 58/334 (17%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +  T+   L+ CA L +F+ GK+ H+ I    +  D  +   L+ FYA+CG L    +VF
Sbjct: 98  ETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------------- 227
           D M ++++  WN M+  + + G+F  ++ LF+ M                          
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 228 -----------------------QILF---EPDGYTFQSITSACAGLATLSLGMWAHAYI 261
                                  Q+++   + D  T  S+   CA   TLSLG   H+  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++    S    +  +N+L+DMY KCG LD A +VFE M +R++ SW S+I G+   GR++
Sbjct: 278 IK---SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+K   ++  +E    + +    +L AC   G +  G+D  D  I   N+   L     
Sbjct: 335 GAIKLLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKANNMESNLFVCNA 392

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L+D+ A+ G+++ A  + S M +K D + W +++
Sbjct: 393 LMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMI 425



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 185/443 (41%), Gaps = 83/443 (18%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           ++E     +SS+L      KS +  K++H+     ++       L    +  +A+  DL 
Sbjct: 94  KSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEA--LGLKLVSFYATCGDLK 151

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--------------- 129
              RVF  +E  N + WN ++   A+  D K ++I LF+ M+E+G               
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK-ESICLFKIMVEKGIEGKRPESAFELFDK 210

Query: 130 -----------------------------------NVLPDKHTFPFALKACAYLFAFSQG 154
                                               +  D  T    L  CA     S G
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  H+   K      +  +N+L+  Y+ CG LD A +VF+ M ER++VSW  MI  + + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  D A+KL ++M+    + D     SI  ACA   +L  G   H YI     +++ +++
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA---NNMESNL 387

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N+L+DMY KCGS++ A  VF +M  +D+ SWN++I                      
Sbjct: 388 FVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI---------------------- 425

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLARAGNI 392
               P+S T   VL AC     +  G++    ++ N Y+    + +   LVDL  + G +
Sbjct: 426 GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVL 483

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
             A  L   +P K D V W  ++
Sbjct: 484 GLARLLFDMIPSK-DLVSWTVMI 505


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 327/598 (54%), Gaps = 43/598 (7%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K+IHAQ +++ L Q     L  + +  +     L  A  +F ++   +  +W +++ A  
Sbjct: 22  KKIHAQIVKSGLNQCQP--LPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYN 79

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++     + + +F  M     + PD   +   LKACA L +   GKQ HA       V D
Sbjct: 80  QA-KLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDD 138

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR--- 226
             + +SL+  YA CG   +A  VFD++L ++ VSW  M+  + + G  D A++LF R   
Sbjct: 139 DVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPV 198

Query: 227 -------------MQILFEPDG-YTF----------------QSITSACAGLATLSLGMW 256
                        +Q  +  DG Y F                 S+  ACA LA L LG  
Sbjct: 199 RNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQ 258

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H  ++     S +    ++N+L+DMY KC  +  AR VF  M  RD+ SW SII+G A 
Sbjct: 259 IHGLVIGSGYESCL---FISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQ 315

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HGRA+ AL  +D++V+ E   PN +TFVG++ AC+H G+VS+GR  F  MI +Y I+P L
Sbjct: 316 HGRAKEALDLYDQMVLAE-IKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSL 374

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           + + C +DLL+R+G+++EA  L+  MP KPD   W +LL AC K H +  +   +A +++
Sbjct: 375 QLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSAC-KHHGNTEMGVRIADRLL 433

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
                  S  YVLLS VYA A +W  +  VRKLMTD  V ++PG SSI++   +  F AG
Sbjct: 434 SLNMHEPS-TYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAG 492

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           +T HP   +I+G L  +D +++ RGY PD S   + D  +  K+  L  HSER A+A G+
Sbjct: 493 ETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYV-LHDMEEQEKERELFWHSERWAVAYGL 551

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L   PG  IR+ KNLR+C DCH   KL S I + EIIVRD  R+HHFKDG CSC D+W
Sbjct: 552 LKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 154/360 (42%), Gaps = 38/360 (10%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H +F  +R +     +++LL +     S+   KQ+HA+ + +  P     ++  S +  +
Sbjct: 92  HYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLS--PFVDDDVVKSSLVDMY 149

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR------------- 124
           A       A  VF  I    S +W  ++   ARS   K +A+ LF R             
Sbjct: 150 AKCGLPSIARSVFDSILVKTSVSWTAMLSGYARS-GLKDEAMELFLRTPVRNLYSWTALI 208

Query: 125 --MIEQGNVLPDKHTF------------PFALK----ACAYLFAFSQGKQAHAHIFKRGL 166
             +++ G  +   + F            P  L     ACA L     GKQ H  +   G 
Sbjct: 209 SGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGY 268

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            S ++I+N+L+  YA C  +  A  VF+ ML R +VSW  +I    Q G    AL L+ +
Sbjct: 269 ESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQ 328

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M +   +P+  TF  +  AC+    +S G      ++   D+ +   + +    +D+  +
Sbjct: 329 MVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIE--DYRISPSLQLFTCFLDLLSR 386

Query: 286 CGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            G L+ A  + ++MP K D  +W +++     HG  E  ++  DRL+      P++   +
Sbjct: 387 SGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLL 446


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/550 (39%), Positives = 310/550 (56%), Gaps = 34/550 (6%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A   ++D A ++F +    + FTW  ++               +  RM+E+   L 
Sbjct: 252 ITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSG------------YIQNRMVEEARELF 299

Query: 134 DKHTFPFALKACAYLFAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           D+      +   A L  + QG++      +F      +V   N++I  YA CG +  A  
Sbjct: 300 DRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 359

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-----YTFQSITSACA 246
           +FD M +R  VSW  MI  + Q G    AL+LF    +L E +G      +F S  S CA
Sbjct: 360 LFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLF----VLMEREGGRLNRSSFSSALSTCA 415

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            +  L LG   H  +++       T   V N+L+ MYCKCGS++ A  +F+ M  +D+ S
Sbjct: 416 DVVALELGKQLHGRLVKG---GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G++ HG  E AL++F+ +   E   P+  T V VLSAC+H G+V +GR YF  M
Sbjct: 473 WNTMIAGYSRHGFGEEALRFFESMK-REGLKPDDATMVAVLSACSHTGLVDKGRQYFHTM 531

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +Y + P  +HY C+VDLL RAG ++EA +L+ NMP +PDA IW +LL A  + H +  
Sbjct: 532 TQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGAS-RVHGNTE 590

Query: 427 LSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           L+E  A ++  +E E    SG+YVLLS +YAS+ RW DVG +R  M DKGV K PG S I
Sbjct: 591 LAETAADKIFAMEPEN---SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 647

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           EI    H F  GD  HP+  +I+ FL+ +D ++K  GY    S   + D  ++ K+  +R
Sbjct: 648 EIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTS-VVLHDVEEEEKERMVR 706

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSERLA+A GI+ +  G PIRV KNLRVC+DCH   K ++++    II+RD  RFHHFK
Sbjct: 707 YHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFK 766

Query: 605 DGSCSCMDYW 614
           DGSCSC DYW
Sbjct: 767 DGSCSCGDYW 776



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 180/393 (45%), Gaps = 40/393 (10%)

Query: 23  NNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD 82
           NN N  S N HSS  S+ T+ +  SQ K +  ++  + + + +  +  Y R    +    
Sbjct: 24  NNANSAS-NFHSSKSSTQTQIQK-SQTKPL-PKSGDSDIKEWNVAISSYMRTGRCSE--- 77

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
              A RVF ++   +S ++N +I    R+ + +  A +LF  M       P++    + +
Sbjct: 78  ---ALRVFKRMPRWSSVSYNAMISGYLRNGEFE-LARMLFDEM-------PERDLVSWNV 126

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
               Y+   + GK     +F+R    DV   N+++  YA  G +D A +VFD M E++ V
Sbjct: 127 MIKGYVRNRNLGKARE--LFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDV 184

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           SWN ++ A+VQ  + + A  LF         + +   S      G       + A  +  
Sbjct: 185 SWNALLSAYVQNSKLEEACVLF------GSRENWALVSWNCLLGGFVKKKKIVEARQFF- 237

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
              D   V DV+  N++I  Y + G +D ARQ+F+  P  D+ +W +++ G+  +   E 
Sbjct: 238 ---DSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEE 294

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A + FDR+        N +++  +L+       V   ++ FDVM    N++     +  +
Sbjct: 295 ARELFDRMP-----ERNEVSWNAMLAGYVQGERVEMAKELFDVMPCR-NVST----WNTM 344

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +   A+ G I EA +L   MP K D V W +++
Sbjct: 345 ITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMI 376


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 334/583 (57%), Gaps = 21/583 (3%)

Query: 35   SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYAFRVFYQ 92
            S+L +     ++S  + +H   ++    ++    +++S  +   ++   +L+ A  VF +
Sbjct: 576  SVLVAWANIGNLSLGRALHGFGVKACFSEE----VVFSNTLLDMYSKCGNLNGATEVFVK 631

Query: 93   IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
            + +    +W + I A  R       AI LF  M  +G V PD +T    + ACA   +  
Sbjct: 632  MGDTTIVSWTSTIAAYVRE-GLYSDAIGLFDEMQSKG-VRPDIYTVTSIVHACACSSSLD 689

Query: 153  QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            +G+  H+++ K G+ S++ + N+LI+ YA CG ++ A  VF  +  + +VSWN MI  + 
Sbjct: 690  KGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 749

Query: 213  QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            Q    + AL+LF  MQ  F+PD  T   +  ACAGLA L  G   H +ILR       +D
Sbjct: 750  QNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILR---RGYFSD 806

Query: 273  VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            + V  +L+DMY KCG L +A+ +F+ +PK+DL SW  +I G+ +HG    A+  F+ + +
Sbjct: 807  LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRI 866

Query: 333  EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
                 P+  +F  +L+AC+H G+++EG  +F+ M NE  + P LEHY C+VDLLAR GN+
Sbjct: 867  -AGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNL 925

Query: 393  DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
             +A   + +MP+KPD  IW  LL   C+ H  V L+E+VA+ + E E    +  YV+L+ 
Sbjct: 926  SKAYKFIESMPIKPDTTIWGVLLSG-CRIHHDVKLAEKVAEHIFELEPDN-TRYYVVLAN 983

Query: 453  VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
            VYA A +W +V  +RK M  +G  + PGCS IE+ G  + F AG++ HPQ K+I    D+
Sbjct: 984  VYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRI----DV 1039

Query: 513  IDEKLKSRGYTPDY---SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
            +  KL  +    DY    +  +++E D  K+     HSE+ A+A GILNL PG  +RV K
Sbjct: 1040 LLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSK 1099

Query: 570  NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
            N RVC DCHE+ K +S+    EI++RD  RFHHFKDG CSC D
Sbjct: 1100 NQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 196/390 (50%), Gaps = 11/390 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           E   N++ S+L    E KS+   K++H+  +   +       L    +  + +  DL   
Sbjct: 366 ELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEA--LGAKLVFMYVNCGDLVQG 423

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
            ++F +I N   F WN L+   A+  + + +++ LF++M + G V+ + +TF   LK  A
Sbjct: 424 RKIFDKIMNDKVFLWNLLMSEYAKIGNFR-ESVSLFKKMQKLG-VVGNCYTFTCVLKCFA 481

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            L    + K+ H ++ K G  S+  + NSLI  Y   G ++ A+ +FD + E  +VSWN 
Sbjct: 482 ALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNS 541

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI+  V  G   + L++F +M IL  E D  T  S+  A A +  LSLG   H + ++ C
Sbjct: 542 MINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC 601

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 +V+ +N+L+DMY KCG+L+ A +VF  M    + SW S I  +   G    A+ 
Sbjct: 602 ---FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIG 658

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            FD +   +   P+  T   ++ AC     + +GRD    +I    +   L     L+++
Sbjct: 659 LFDEM-QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINM 716

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            A+ G+++EA  + S +P+K D V W +++
Sbjct: 717 YAKCGSVEEARLVFSKIPVK-DIVSWNTMI 745



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 150/320 (46%), Gaps = 16/320 (5%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L+ CA   +   GK+ H+ I   G+  D  +   L+  Y +CG L    K+FD ++   +
Sbjct: 376 LQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKV 435

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
             WN+++  + + G F  ++ LF++MQ L    + YTF  +    A L  +      H Y
Sbjct: 436 FLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGY 495

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           +L+       ++  V NSLI  Y K G ++ A  +F+ + + D+ SWNS+I G  ++G +
Sbjct: 496 VLK---LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
              L+ F ++++      +  T V VL A  + G +S GR      +       V+    
Sbjct: 553 GNGLEIFIQMLI-LGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVV-FSN 610

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASVVLSEEVAKQVIE 437
            L+D+ ++ GN++ A  +   M      V W S + A  ++     ++ L +E+  +   
Sbjct: 611 TLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSK--- 666

Query: 438 SEGGICSGVYVLLSRVYASA 457
              G+   +Y + S V+A A
Sbjct: 667 ---GVRPDIYTVTSIVHACA 683


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/543 (39%), Positives = 309/543 (56%), Gaps = 14/543 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     L  A  VF  +   +  TWN++I A  +       A+ LF  M+E G V PD  
Sbjct: 213 YGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVA-AAVELFHGMMESG-VCPDVL 270

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T      A A        K  H ++ +RG  V D+   N+++  YA    +D A KVFDN
Sbjct: 271 TLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDN 330

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--ILFEPDGYTFQSITSACAGLATLSL 253
           + +R +VSWN +I  ++Q G  + A++++  M      +P   TF S+  A + L  L  
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           GM  HA  ++     L  DV V   LID+Y KCG L  A  +FE MP+R    WN+II G
Sbjct: 391 GMRMHALSIKT---GLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAG 447

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
             +HG    AL  F ++  EE   P+ +TFV +L+AC+H G+V +GR +FD+M   Y I 
Sbjct: 448 LGVHGHGAKALSLFSQMQQEE-IKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIV 506

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P+ +HY C+VD+L RAG +DEA   + +MP+KPD+ +W +LL AC + H +V + +  ++
Sbjct: 507 PIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGAC-RIHGNVEMGKVASQ 565

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
            + E +     G YVL+S +YA   +W+ V  VR L+  + + K PG SS+E+ G    F
Sbjct: 566 NLFELDPENV-GYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVF 624

Query: 494 FAGDTS--HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
           ++G  +  HPQ ++I   L  +  K+KS GY PDYS   + D  +D K+  L  HSERLA
Sbjct: 625 YSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYS-FVLQDVEEDEKEQILNNHSERLA 683

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA GI+N  PG P+ ++KNLRVC DCH  TK IS+I   EIIVRD  RFHHFKDG CSC 
Sbjct: 684 IAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCG 743

Query: 612 DYW 614
           D+W
Sbjct: 744 DFW 746



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 192/412 (46%), Gaps = 45/412 (10%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           Q+HA ALR  L   H  +     ++H +  F  +  A+RVF ++   +   WN ++    
Sbjct: 87  QLHACALRLGL--LHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLC 144

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           R+  A   A+ L  RM+ +G V  D  T    L  C  L   +     H +  K GL  +
Sbjct: 145 RNTRAA-DAVTLLGRMVGEG-VAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGE 202

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR-RMQ 228
           +++ N+LI  Y   G L  A+ VF  M  R LV+WN +I A  Q G+  +A++LF   M+
Sbjct: 203 LFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME 262

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               PD  T  S+ SA A           H Y+ R      V D++  N+++DMY K   
Sbjct: 263 SGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWD--VGDIIAGNAMVDMYAKMSK 320

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +D A++VF+++P RD+ SWN++I G+  +G A  A++ ++ +   E   P   TFV VL 
Sbjct: 321 IDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLP 380

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP----- 403
           A ++ G + +G     + I +  +   +    CL+DL A+ G + EA+ L  +MP     
Sbjct: 381 AYSYLGGLQQGMRMHALSI-KTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTG 439

Query: 404 -----------------------------MKPDAVIWRSLLDACCKKHASVV 426
                                        +KPD V + SLL AC   HA +V
Sbjct: 440 PWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAAC--SHAGLV 489


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 333/579 (57%), Gaps = 29/579 (5%)

Query: 46  MSQLK-QIHAQALRTALPQQHKTLLIYSRIIHFASFADL-DYAFRVFYQIENPNSFTWNT 103
           + Q+K Q+H+  ++  +      L +   ++   S  DL + A   F  +   +   WN 
Sbjct: 347 LGQMKRQLHSSLMKMDMESD---LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 403

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +I   ++  +   +A+ LF  M ++G +  ++ T    LK+ A L      +Q H    K
Sbjct: 404 IISGYSQYWE-DMEALSLFVEMHKEG-IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 461

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
            G  SD+Y+ NSLI  Y  C H++ A ++F+      LVS+  MI A+ Q+G+ + ALKL
Sbjct: 462 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 521

Query: 224 FRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           F  MQ +  +PD +   S+ +ACA L+    G   H +IL++     V D+   NSL++M
Sbjct: 522 FLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKY---GFVLDIFAGNSLVNM 578

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y KCGS+D A + F  + +R + SW+++I G A HG    AL+ F++++ +E  SPN IT
Sbjct: 579 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML-KEGVSPNHIT 637

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            V VL ACNH G+V+E + YF+ M   +   P+ EHY C++DLL RAG I+EA+ LV+ M
Sbjct: 638 LVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKM 697

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESEGGICSGVYVLLSRVYASARRW 460
           P + +A +W +LL A  + H  V L    A+   ++E E    SG +VLL+ +YASA +W
Sbjct: 698 PFEANASVWGALLGAA-RIHKDVELGRRAAEMLFILEPEK---SGTHVLLANIYASAGKW 753

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
            +V  VR+LM D  V KEPG S IE+    + F  GD SH ++++IY  LD + + +   
Sbjct: 754 ENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKA 813

Query: 521 GYTPDYSQAAMVD-ELDDGKQSSLRL----HSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           GY P      MV+ +L D +QS   L    HSE+LA+A G++    G PIRV KNLRVC 
Sbjct: 814 GYVP------MVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCV 867

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   K I +I + EIIVRD  RFHHFKDGSCSC DYW
Sbjct: 868 DCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 163/338 (48%), Gaps = 20/338 (5%)

Query: 2   AVAIVQGGPPTPQTHSHSIFNNNRNEGSFN----NHSSLLSSLTECKSMSQLKQIHAQAL 57
           A  ++Q  P   +    +   N  ++G+F     ++S LLS     KS+    QIHA   
Sbjct: 24  APKLIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHIT 83

Query: 58  RTAL---PQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           ++ L   P     L+ +YS+   F       YA ++  +   P+  +W+ LI   A++  
Sbjct: 84  KSGLSDDPSIRNHLINLYSKCRXFG------YARKLVDESSEPDLVSWSALISGYAQN-G 136

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
               A++ F  M   G V  ++ TF   LKAC+ +     GKQ H  +   G   DV++ 
Sbjct: 137 LGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
           N+L+  YA C     + ++FD + ER++VSWN +   +VQ      A+ LF  M +   +
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIK 255

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P+ ++  S+ +AC GL   S G   H Y+++        D    N+L+DMY K G L  A
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIK---LGYDWDPFSANALVDMYAKVGDLADA 312

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             VFE + + D+ SWN++I G  LH   E AL+   ++
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 10/305 (3%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           PQ   +   +I++GN  P   ++   L  C    +   G Q HAHI K GL  D  I N 
Sbjct: 38  PQTTAILN-LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNH 96

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
           LI+ Y+ C     A K+ D   E  LVSW+ +I  + Q G    AL  F  M +L  + +
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            +TF S+  AC+ +  L +G   H  ++         DV V N+L+ MY KC     +++
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVV---SGFEGDVFVANTLVVMYAKCDEFLDSKR 213

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F+ +P+R++ SWN++   +        A+  F  +V+     PN  +   +++AC    
Sbjct: 214 LFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLR 272

Query: 355 MVSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
             S G+     +I   Y+  P   +   LVD+ A+ G++ +A+ +   +  +PD V W +
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNA 329

Query: 414 LLDAC 418
           ++  C
Sbjct: 330 VIAGC 334


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 338/616 (54%), Gaps = 15/616 (2%)

Query: 3    VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRT 59
            V +V  G       S  IF   + EG   N  +  S L  C S+  +   +QIH Q L+T
Sbjct: 443  VMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT 502

Query: 60   ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
                Q    +    I  +A    LD+A ++F +++  +  +W  +I   A+  +   +A+
Sbjct: 503  GF--QFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQH-EKFAEAL 559

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             LF+ M +QG +  D   F  A+ ACA + A +QG+Q HA     G   D+ + N+L+  
Sbjct: 560  NLFKEMQDQG-IHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSL 618

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            YA CG +  A   FD +  +  +SWN +I  F Q G  + AL LF +M +   E + +TF
Sbjct: 619  YARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTF 678

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
                SA A +A + LG   HA I++    S   +  V+N LI +Y KCG++D A + F  
Sbjct: 679  GPAVSAAANVANVKLGKQIHAMIIKTGHDS---ETEVSNVLITLYAKCGNIDDAERQFFE 735

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            MP+++  SWN+++ G++ HG    AL  F+ +  +    PN +TFVGVLSAC+H G+V E
Sbjct: 736  MPEKNEISWNAMLTGYSQHGHGFKALSLFEDMK-QLGVLPNHVTFVGVLSACSHVGLVDE 794

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G  YF  M   + + P  EHY C+VDLL R+G +  A   V  MP++PDA++ R+LL AC
Sbjct: 795  GIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSAC 854

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
               H ++ + E  A  ++E E    S  YVLLS +YA   +W      R++M D+GV KE
Sbjct: 855  IV-HKNIDIGEFAASHLLELEPKD-SATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKE 912

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            PG S IE++   H FFAGD  HP   +IY +L  ++E     GY P  + + + D     
Sbjct: 913  PGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQ-TNSLLNDAERRQ 971

Query: 539  KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
            K  +  +HSE+LAIA G+L+L    PI VFKNLRVC DCH   K +S+I +  I+VRD  
Sbjct: 972  KGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSY 1031

Query: 599  RFHHFKDGSCSCMDYW 614
            RFHHFK G CSC DYW
Sbjct: 1032 RFHHFKGGICSCKDYW 1047



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 171/335 (51%), Gaps = 11/335 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L+ A +VF  ++  +S +W  ++   ++S   + +A++LF +M   G V P  + F   L
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQS-GCEEEAVLLFCQMHTSG-VYPTPYIFSSVL 278

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC  +  +  G+Q H  + K+G   + Y+ N+L+  Y+  G+   A +VF+ ML+R  V
Sbjct: 279 SACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEV 338

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           S+N +I    Q G  D AL+LF++M +   +PD  T  S+ SAC+ +  L +G   H+Y 
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYA 398

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++     + +D+++  +L+D+Y KC  +  A + F S    ++  WN +++ + L     
Sbjct: 399 IK---AGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLN 455

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYG 380
            + K F ++ + E   PN  T+  +L  C+    V  G   +  V+   +     +    
Sbjct: 456 ESFKIFTQMQM-EGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVS--S 512

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L+D+ A+ G +D AL +   +  K D V W +++
Sbjct: 513 VLIDMYAKLGKLDHALKIFRRLKEK-DVVSWTAMI 546



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 226/507 (44%), Gaps = 67/507 (13%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV--LFQRMIEQGNVLPD 134
           + +F DLD A  VF ++       WN ++    R V  K    V  LF+RM+++  V PD
Sbjct: 113 YIAFGDLDGAVTVFDEMPVRPLSCWNKVLH---RFVAGKMAGRVLGLFRRMLQE-KVKPD 168

Query: 135 KHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           + T+   L+ C      F   ++ HA     G  + +++ N LI  Y   G L+ A KVF
Sbjct: 169 ERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVF 228

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D + +R  VSW  M+    Q G  + A+ LF +M      P  Y F S+ SAC  +    
Sbjct: 229 DGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYK 288

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           +G   H  +L+        +  V N+L+ +Y + G+   A QVF +M +RD  S+NS+I 
Sbjct: 289 VGEQLHGLVLK---QGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLIS 345

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G +  G ++ AL+ F ++ + +   P+ +T   +LSAC+  G +  G+ +    I     
Sbjct: 346 GLSQQGYSDKALELFKKMCL-DCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMS 404

Query: 373 TPVLEHYGCLVDLLARAG-------------------------------NIDEALHLVSN 401
           + ++   G L+DL  +                                 N++E+  + + 
Sbjct: 405 SDIILE-GALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQ 463

Query: 402 MPM---KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV--LLSRVYAS 456
           M M   +P+   + S+L  C    A V L E++  QV+++  G    VYV  +L  +YA 
Sbjct: 464 MQMEGIEPNQFTYPSILRTCSSLRA-VDLGEQIHTQVLKT--GFQFNVYVSSVLIDMYAK 520

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA-HEFFAGDTSHPQTKQIYGFLDLIDE 515
             + +    + + + +K V       +  I G A HE FA        + +  F ++ D+
Sbjct: 521 LGKLDHALKIFRRLKEKDVVS----WTAMIAGYAQHEKFA--------EALNLFKEMQDQ 568

Query: 516 KLKSR--GYTPDYSQAAMVDELDDGKQ 540
            + S   G+    S  A +  L+ G+Q
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQ 595



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 200/468 (42%), Gaps = 39/468 (8%)

Query: 70  IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
           I ++I  F     + + F+ F  +E+  + ++       A S D      + F  ++E+ 
Sbjct: 12  IVNKIKQFRPVVSIFFFFQKF--LEHNTALSY-------AYSNDEGEANGINFLHLMEER 62

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            V  +  T+ + L  C     FS G + H  I K G  ++V +   L+  Y + G LD A
Sbjct: 63  GVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGA 122

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL 248
             VFD M  R L  WN ++  FV        L LFRRM Q   +PD  T+  +   C G 
Sbjct: 123 VTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGG 182

Query: 249 -ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
                     HA   R   H     + V N LID+Y K G L+ A++VF+ + KRD  SW
Sbjct: 183 DVPFHCVEKIHA---RTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSW 239

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            +++ G +  G  E A+  F ++     + P    F  VLSAC        G     +++
Sbjct: 240 VAMLSGLSQSGCEEEAVLLFCQMHTSGVY-PTPYIFSSVLSACTKVEFYKVGEQLHGLVL 298

Query: 368 NEYNITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
            +      LE Y C  LV L +R GN   A   V N  ++ D V + SL+    ++  S 
Sbjct: 299 KQ---GFSLETYVCNALVTLYSRLGNFIPA-EQVFNAMLQRDEVSYNSLISGLSQQGYSD 354

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYA-----SARRWNDVGLVRKLMTD---KGVTK 477
              E   K  ++     C  V  LLS   +       ++++   +   + +D   +G   
Sbjct: 355 KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALL 414

Query: 478 E--PGCSSIEIDGIAHEFF-AGDTSHPQTKQI----YGFLDLIDEKLK 518
           +    CS I+    AHEFF + +T +     +    YG LD ++E  K
Sbjct: 415 DLYVKCSDIK---TAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFK 459


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/550 (39%), Positives = 309/550 (56%), Gaps = 34/550 (6%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A    +D A ++F +    + FTW  ++               +  RM+E+   L 
Sbjct: 257 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSG------------YIQNRMVEEARELF 304

Query: 134 DKHTFPFALKACAYLFAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           DK      +   A L  + QG++      +F      +V   N++I  YA CG +  A  
Sbjct: 305 DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 364

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-----YTFQSITSACA 246
           +FD M +R  VSW  MI  + Q G    AL+LF +M    E +G      +F S  S CA
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM----EREGGRLNRSSFSSALSTCA 420

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            +  L LG   H  +++       T   V N+L+ MYCKCGS++ A  +F+ M  +D+ S
Sbjct: 421 DVVALELGKQLHGRLVKG---GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 477

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G++ HG  E AL++F+ +   E   P+  T V VLSAC+H G+V +GR YF  M
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMK-REGLKPDDATMVAVLSACSHTGLVDKGRQYFYTM 536

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +Y + P  +HY C+VDLL RAG +++A +L+ NMP +PDA IW +LL A  + H +  
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS-RVHGNTE 595

Query: 427 LSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           L+E  A ++  +E E    SG+YVLLS +YAS+ RW DVG +R  M DKGV K PG S I
Sbjct: 596 LAETAADKIFAMEPEN---SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           EI    H F  GD  HP+  +I+ FL+ +D ++K  GY    S   + D  ++ K+  +R
Sbjct: 653 EIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS-VVLHDVEEEEKERMVR 711

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSERLA+A GI+ +  G PIRV KNLRVC+DCH   K ++RI    II+RD  RFHHFK
Sbjct: 712 YHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFK 771

Query: 605 DGSCSCMDYW 614
           DGSCSC DYW
Sbjct: 772 DGSCSCGDYW 781



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 155/330 (46%), Gaps = 31/330 (9%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF ++   +S ++N +I    R+ + +     L +++ ++   +P++    + +   
Sbjct: 83  ALRVFKRMPRWSSVSYNGMISGYLRNGEFE-----LARKLFDE---MPERDLVSWNVMIK 134

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
            Y+   + GK     +F+     DV   N+++  YA  G +D A  VFD M E++ VSWN
Sbjct: 135 GYVRNRNLGKARE--LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWN 192

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            ++ A+VQ  + + A  LF+        + +   S      G       + A  +     
Sbjct: 193 ALLSAYVQNSKMEEACMLFK------SRENWALVSWNCLLGGFVKKKKIVEARQFF---- 242

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           D   V DV+  N++I  Y + G +D ARQ+F+  P +D+ +W +++ G+  +   E A +
Sbjct: 243 DSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARE 302

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            FD++        N +++  +L+       +   ++ FDVM    N++     +  ++  
Sbjct: 303 LFDKMP-----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR-NVST----WNTMITG 352

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            A+ G I EA +L   MP K D V W +++
Sbjct: 353 YAQCGKISEAKNLFDKMP-KRDPVSWAAMI 381



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 114/276 (41%), Gaps = 73/276 (26%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           SD+   N  I  Y   G  + A +VF  M   S VS+N MI  +++ GEF+ A KLF  M
Sbjct: 62  SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
                P+                                     D++  N +I  Y +  
Sbjct: 122 -----PE------------------------------------RDLVSWNVMIKGYVRNR 140

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS------- 340
           +L  AR++FE MP+RD+ SWN+++ G+A +G  + A   FDR+  +   S N+       
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200

Query: 341 -------------------ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
                              +++  +L     +  + E R +FD M    N+  V+  +  
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM----NVRDVVS-WNT 255

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           ++   A++G IDEA  L    P++ D   W +++  
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVSG 290


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/593 (39%), Positives = 320/593 (53%), Gaps = 75/593 (12%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           R     +NH +L   L +CK++  LKQ+HA  + T L      L   SRI+  +S     
Sbjct: 2   RGPNPSSNHPTL-QLLEKCKTLDTLKQVHAHMITTGLIFHTYPL---SRILLISSTIVFT 57

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           +A  +F  I NP  F +NTLI + A                    N+ P  H        
Sbjct: 58  HALSIFNHIPNPTIFLYNTLISSLA--------------------NIKPHTH-------- 89

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI--HFYASCGHLDLANKVFDNMLERSLV 202
                AFS        ++ R L       N       + +CG                  
Sbjct: 90  ----IAFS--------LYSRVLTHTTLKPNGFTFPSLFKACGS----------------Q 121

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
            W +  D F+      S L LF  MQ  L + +  T  ++ SACA L  LS G WAH Y+
Sbjct: 122 PW-LRHDIFL----IKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYV 176

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+H   +L  +  V  +LIDMY KCG LD+A Q+F+ +P RD   +N++I GFA+HG   
Sbjct: 177 LKH---NLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 233

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL  F ++ +E   +P+ +T V  + +C+H G+V EG D F+ M   Y + P LEHYGC
Sbjct: 234 QALDLFKKMTLE-GLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGC 292

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           LVDLL RAG + EA   V NMPMKP+AVIWRSLL A  + H ++ + E V K +I+ E  
Sbjct: 293 LVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAA-RVHGNLEIGEVVLKHLIQLEPE 351

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             SG YVLLS +YAS  RW+DV  VRKLM D G+ K PG S +E+ G  HEF  GD +HP
Sbjct: 352 T-SGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHP 410

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           ++K+IY  L+ +  +L   G+ P  +   + D  ++ K+ +L  HSERLAIA  ++    
Sbjct: 411 RSKEIYLKLEEMSRRLHEYGHKPR-TLEVLFDIEEEEKEDALSYHSERLAIAFALIASHH 469

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIR+ KNLRVC DCH  +KLIS+I+  EIIVRDR RFHHFK+G+CSC DYW
Sbjct: 470 CAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 339/602 (56%), Gaps = 20/602 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH 76
           + +  R EG   N  +++S L  C  +  +     IH   ++  L      L + + +I+
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL---EFDLFVSNALIN 359

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A F +L+ A + F Q+   +  +WN++I A  ++ D    A   F +M   G   PD 
Sbjct: 360 MYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN-DDPVTAHGFFVKMQLNG-FQPDL 417

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFD 194
            T        A        +  H  I +RG L+ DV I N+++  YA  G LD A+KVF+
Sbjct: 418 LTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE 477

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLS 252
            +  + ++SWN +I  + Q G    A+++++ M+   E  P+  T+ SI  A A +  L 
Sbjct: 478 IIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQ 537

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            GM  H  +++   H    DV V   LID+Y KCG L  A  +F  +P+    +WN+II 
Sbjct: 538 QGMKIHGRVIKTNLH---LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
              +HG AE  LK F  ++ +E   P+ +TFV +LSAC+H G V EG+  F +M  EY I
Sbjct: 595 CHGIHGHAEKTLKLFGEML-DEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGI 652

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P L+HYGC+VDLL RAG ++ A   + +MP++PDA IW +LL AC + H ++ L +  +
Sbjct: 653 KPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGAC-RIHGNIELGKFAS 711

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            ++ E +     G YVLLS +YA+  +W  V  VR L  ++G+ K PG S+IE++     
Sbjct: 712 DRLFEVDSKNV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDV 770

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F+ G+ SHP+ K+IY  L ++  K+KS GY PDYS   + D  +D K+  L  HSERLAI
Sbjct: 771 FYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYS-FVLQDVEEDEKEHILTSHSERLAI 829

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GI++  P  PIR+FKNLRVC DCH  TK ISRI   EI+VRD  RFHHFKDG CSC D
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGD 889

Query: 613 YW 614
           YW
Sbjct: 890 YW 891



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 207/437 (47%), Gaps = 28/437 (6%)

Query: 12  TPQTHSHSIFNNNRN-EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           +PQ  S+ + N N   + +F   SS  +   +C        +HA  +     Q   ++ I
Sbjct: 105 SPQFSSYGLGNQNEEIDFNFLFDSSTKTPFAKC--------LHALLVVAGKVQ---SIFI 153

Query: 71  YSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
            +R+++ +A+  D+  +   F QI   + + WN++I A   +     +AI  F +++   
Sbjct: 154 STRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFH-EAIGCFYQLLLVS 212

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            + PD +TFP  LKAC  L     G++ H   FK G   +V++  SLIH Y+  G   +A
Sbjct: 213 EIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIA 269

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
             +FD+M  R + SWN MI   +Q G    AL +   M++   + +  T  SI   C  L
Sbjct: 270 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQL 329

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             +S  M  H Y+++   H L  D+ V+N+LI+MY K G+L+ AR+ F+ M   D+ SWN
Sbjct: 330 GDISTAMLIHLYVIK---HGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWN 386

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           SII  +  +     A  +F ++ +   F P+ +T V + S           R     ++ 
Sbjct: 387 SIIAAYEQNDDPVTAHGFFVKMQL-NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMR 445

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL-----DACCKKHA 423
              +   +     +VD+ A+ G +D A  +   +P+K D + W +L+     +    +  
Sbjct: 446 RGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITGYAQNGLASEAI 504

Query: 424 SVVLSEEVAKQVIESEG 440
            V    E  K++I ++G
Sbjct: 505 EVYKMMEECKEIIPNQG 521


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 323/545 (59%), Gaps = 16/545 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F+    +D A +VF +      + WN L RA A +       + L+ RM   G V  D+ 
Sbjct: 114 FSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGN-DVLELYPRMNMMG-VSSDRF 171

Query: 137 TFPFALKACAY---LFAFSQ-GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           T+ + LKAC     L +F Q GK+ HAHI + G  + V++  +L+  YA  G +  A+ V
Sbjct: 172 TYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAV 231

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLA 249
           FD M  +++VSW+ MI  + + G+   AL+LFR M +      P+  T  S+  ACA  A
Sbjct: 232 FDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFA 291

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G   HAYILR    S++    V ++LI MY +CG L+  + +F+ M K+D+  WNS
Sbjct: 292 ALEQGKLIHAYILRRGLDSILP---VISALITMYARCGKLESGQLIFDRMHKKDVVLWNS 348

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I  + LHG    A+K F+ ++ +  FSP+ I+F+ VL AC+H G+V EG+  F+ M+ E
Sbjct: 349 LISSYGLHGYGRKAIKIFEEMI-DHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKE 407

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + I P +EHY C+VDLL RA  +DEA  ++ ++ ++P   +W SLL AC + H  V L+E
Sbjct: 408 HGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGAC-RIHCHVELAE 466

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             +K++ + E    +G YVLL+ +YA A  W++V  V+KL+  + + K PG S IE+   
Sbjct: 467 RASKRLFKLEP-TNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRK 525

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            + F + D  +PQ +Q++  L  +  ++K RGYTP  ++  + D   + K+  +  HSE+
Sbjct: 526 IYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQ-TKLVLYDLDQEEKERIVLGHSEK 584

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+A G++N   G  IR+ KNLR+C+DCH VTK IS+  + EI+VRD  RFHHFKDG CS
Sbjct: 585 LAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCS 644

Query: 610 CMDYW 614
           C DYW
Sbjct: 645 CGDYW 649



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 148/314 (47%), Gaps = 22/314 (7%)

Query: 121 LFQRMIEQGNVL-----------PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           L Q + +QGN+            P + T    + + A   + S     H  +   G   D
Sbjct: 44  LIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQD 103

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
            ++   LI+ ++    +D A KVFD   +R++  WN +  A    G  +  L+L+ RM +
Sbjct: 104 PFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNM 163

Query: 230 L-FEPDGYTFQSITSACAG----LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           +    D +T+  +  AC      ++ L  G   HA+ILR   H     V V  +L+DMY 
Sbjct: 164 MGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILR---HGYGAHVHVMTTLMDMYA 220

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS-PNSITF 343
           + G +  A  VF+ MP +++ SW+++I  +A +G+   AL+ F  +++    S PNS+T 
Sbjct: 221 RFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTM 280

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           V VL AC     + +G+      I    +  +L     L+ + AR G + E+  L+ +  
Sbjct: 281 VSVLQACAAFAALEQGK-LIHAYILRRGLDSILPVISALITMYARCGKL-ESGQLIFDRM 338

Query: 404 MKPDAVIWRSLLDA 417
            K D V+W SL+ +
Sbjct: 339 HKKDVVLWNSLISS 352


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 319/546 (58%), Gaps = 15/546 (2%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQGN 130
           S I  ++S   L+ A  VF ++E+ +  +W  +I   A  V  K P   V   +M+E   
Sbjct: 339 SLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI---ASLVSHKLPFKAVETYKMMELEG 395

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +LPD+ T    L ACA +     G + H    K GLVS V ++NSLI  Y+ C  +D A 
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           +VF N+  +++VSW  +I           AL  FR+M+   +P+  T  S+ SACA +  
Sbjct: 456 EVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGA 515

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA+ LR     +  D  + N+++DMY +CG    A   F S  K+D+T+WN +
Sbjct: 516 LMRGKEIHAHALRT---GVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNIL 571

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           + G+A  G+A+ A++ FD+++ E    P+ ITF+ +L AC+  GMV+EG +YF++M N+Y
Sbjct: 572 LTGYAQQGQAKLAVELFDKML-ELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKY 630

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
           N+TP L+HY C+VD+L RAG +D+A   + +MP++PDA IW +LL+A C+ H +V L E 
Sbjct: 631 NLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA-CRIHRNVELGEI 689

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            AK+V E +     G Y+LL  +YA    W+ V  VR LM ++G++ +PGCS +EI G  
Sbjct: 690 AAKRVFEKDNK-SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F +GD SH Q+K+I G LD    K+K  G+     +++   E++  +      HSER 
Sbjct: 749 HAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGN--LKSSFTSEIESSRADIFCGHSERQ 806

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G++N  PGMPI V KNL +C  CH + K IS I   EI VRD   +HHFKDG CSC
Sbjct: 807 AIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSC 866

Query: 611 MD--YW 614
            D  YW
Sbjct: 867 GDEGYW 872



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 177/340 (52%), Gaps = 9/340 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F  F +L  A+ VF ++   + F+WN L+   A++     +A+ L+ RM+    + P+ +
Sbjct: 142 FVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKA-GCFDEALNLYHRML-WAEIRPNVY 199

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TFP  LK CA +   ++GK+ HAH+ + G  SDV + N+LI  Y  CG +  A  +FD M
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            +R  +SWN MI  + + G     L+LF  M+ L  +PD  T  ++ SAC  L    LG 
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y+++        D+ +NNSLI MY   G L+ A  VF  M  +D+ SW ++I    
Sbjct: 320 GVHGYVVK---SEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            H     A++ + +++  E   P+ IT V VLSAC   G +  G    ++ I    ++ V
Sbjct: 377 SHKLPFKAVETY-KMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +     L+D+ ++   +D AL +  N+  K + V W SL+
Sbjct: 436 IVS-NSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLI 473



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 8/300 (2%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           QA+   + M+E   +  ++  +   L+ C +  A  +G + +  +        V + N+L
Sbjct: 80  QAMKRLESMLEL-RIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNAL 138

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           +  +   G+L  A  VF  M ER + SWNV++  + + G FD AL L+ RM      P+ 
Sbjct: 139 LSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNV 198

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           YTF S+   CAG++ ++ G   HA+++R       +DV V N+LI MY KCG +  AR +
Sbjct: 199 YTFPSVLKTCAGVSDIARGKEIHAHVIR---FGFESDVDVGNALITMYVKCGDISNARML 255

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+ MPKRD  SWN++I G+  +G     L+ F  ++ E S  P+ IT   V SAC     
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFS-MMRELSVDPDLITMTTVASACELLDN 314

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              GR     ++        +     L+ + +  G ++EA  + S M  K D V W +++
Sbjct: 315 ERLGRGVHGYVVKS-EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK-DVVSWTAMI 372



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 60/286 (20%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  +L+S L+ C  +  L   K+IHA ALRT +               F   A LD   R
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVG-----------FDGFLPNAILDMYVR 547

Query: 89  VFYQIENPNSFT--------WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
              ++   N F         WN L+   A+   AK  A+ LF +M+E   + PD+ TF  
Sbjct: 548 CGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAK-LAVELFDKMLEL-EIHPDEITFIS 605

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC+                K G+V++      L +F        + NK     L  +
Sbjct: 606 LLCACS----------------KSGMVTE-----GLEYFNI------MKNKY---NLTPN 635

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           L  +  ++D   + G+ D A    + M I   PD   + ++ +AC     + LG  A   
Sbjct: 636 LKHYACVVDILGRAGQLDDAYDFIQDMPI--RPDAAIWGALLNACRIHRNVELGEIAAKR 693

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
           +    + S+   +L    L ++Y  CG+ D   +V   M +R L++
Sbjct: 694 VFEKDNKSVGYYIL----LCNLYAGCGNWDKVSKVRSLMRERGLSA 735


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 339/603 (56%), Gaps = 22/603 (3%)

Query: 21   FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
            F   R    + ++ +++S+L+ C S+  +   +Q+H + L+  L      L +       
Sbjct: 478  FQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGL-----DLDVSVSNALL 532

Query: 78   ASFADLDYAF---RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
            A + +  Y     + F  + + +  +WN+LI A A S  +  +A+  F  M+  G   P+
Sbjct: 533  ALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAG-WDPN 591

Query: 135  KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            + TF   L A + L     GKQ HA + KR + +D  I N+L+  Y  CG +     +F 
Sbjct: 592  RVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFS 651

Query: 195  NMLERS-LVSWNVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLS 252
             M +R   VSWN MI  ++       A+ + +  MQ     DG+TF ++ SACA +ATL 
Sbjct: 652  RMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLE 711

Query: 253  LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
             GM  H   +R C   L +D+++ ++L+DMY KCG +D A + FE MP R+L SWNS+I 
Sbjct: 712  RGMEVHGCSVRAC---LESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMIS 768

Query: 313  GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            G+A HG    +L  F ++ ++    P+ +TFVGVLSAC+H G+V+EG  +FD M   Y +
Sbjct: 769  GYARHGHGTKSLDLFAQMKLQGPL-PDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGL 827

Query: 373  TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEEV 431
             P +EH+ C+VDLL R G +++    ++ MP+KP+ +IWR++L ACC+ +  +  L    
Sbjct: 828  APRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRA 887

Query: 432  AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
            A+ ++E E       Y+LLS +YAS  +W+DV   R  M    V KE GCS + +    H
Sbjct: 888  AEMLLEMEPTNAVN-YILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVH 946

Query: 492  EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
             F AGD SHP+   IY  L  ++ K++  GY P+ ++ A+ D   + K+  L  HSE++A
Sbjct: 947  VFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPE-TRFALYDLEGESKEELLSYHSEKIA 1005

Query: 552  IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
            +A  +L     MPIR+ KNLRVC DCH   K IS+I   +I++RD  RFHHF++G CSC 
Sbjct: 1006 VAF-VLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCG 1064

Query: 612  DYW 614
            D+W
Sbjct: 1065 DFW 1067



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 179/378 (47%), Gaps = 20/378 (5%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +++H Q  +      +   L  + I  +A   DL    +VF ++   N  +W+ LI    
Sbjct: 93  EELHLQLFKNGFV--NDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL--FAFSQGKQAHAHIFKRGLV 167
           R+     +A  LF++M+  G  +P+ + F   ++AC     +    G Q H  + K   V
Sbjct: 151 RN-RMPNEACELFRKMVSDG-FMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYV 208

Query: 168 SDVYINNSLIHFYASC-GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           +DV  +N LI  Y +  G +D A + FD++  R+LVS N MI  + Q G+  SA  +F  
Sbjct: 209 NDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFST 268

Query: 227 MQIL-----FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           MQ        +P+ YTF S+ SA   LA   L +     + R      + D+ V ++L+ 
Sbjct: 269 MQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQ-LLTRVEKSGFLHDLYVGSALVS 327

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
            + K GS+  A+ +F+ M  R++ S N +I+G     R E A++ F  +      +PNS 
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNS- 386

Query: 342 TFVGVLSACNHRGMVSEGR----DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
            ++ +L+A     ++  G+    +    +I    +   +     L+++ A+ G I++A  
Sbjct: 387 -YMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACV 445

Query: 398 LVSNMPMKPDAVIWRSLL 415
           +   M  K D+V W S++
Sbjct: 446 VFRLMDNK-DSVTWNSMI 462



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 189/435 (43%), Gaps = 41/435 (9%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQ--LK---QIHAQALRTALPQQHKTLLIYSRI 74
           +F    ++G   NH +  S +  C+   +  LK   QIH    +T    Q+   +  S +
Sbjct: 161 LFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKT----QYVNDVTASNV 216

Query: 75  I---HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVL--FQRMIEQG 129
           +   +  +   +DYA R F  I   N  + N++I    +  DA     +    Q+ +   
Sbjct: 217 LISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGD 276

Query: 130 NVLPDKHTFPFALKACAYLF--AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
            + P+++TF   + A   L        +Q    + K G + D+Y+ ++L+  +A  G + 
Sbjct: 277 GLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIG 336

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247
            A  +F  M  R++VS N +I   V+    + A++LF  M+   E +  ++  I +A   
Sbjct: 337 YAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPE 396

Query: 248 LATLS----LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
              L      G   HA+++R     L   + + N LI+MY KCG+++ A  VF  M  +D
Sbjct: 397 FHVLENGKRKGSEVHAFLIR--SGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKD 454

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY- 362
             +WNS+I G   + +   A+K F  +   E + P++ T +  LS+C   G +S G    
Sbjct: 455 SVTWNSMITGLDQNKQFLEAVKTFQEMRRTELY-PSNFTMISALSSCASLGWISVGEQLH 513

Query: 363 -------FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                   D+ ++  N          L+ L    G + E     S M +  D V W SL+
Sbjct: 514 CEGLKLGLDLDVSVSN---------ALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLI 563

Query: 416 DACCKKHASVVLSEE 430
            A      S++ + E
Sbjct: 564 GALADSEPSMLEAVE 578


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/595 (37%), Positives = 341/595 (57%), Gaps = 19/595 (3%)

Query: 26  NEGSFNNHSSLLSS-LTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           N GS     +L S  L +C  + +LKQ   IHA    +        L++ + I++ +A  
Sbjct: 97  NCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDD---LVLLNFILNMYAKC 153

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             L+ A  +F ++   +  +W  LI   ++S  A  +A+ LF +M+  G   P++ T   
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQAS-EALALFPKMLHLG-FQPNEFTLSS 211

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            LKA     +   G+Q HA   K G   +V++ +SL+  YA   H+  A  +F+++  ++
Sbjct: 212 LLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +VSWN +I    + GE +  ++LF +M +  FEP  +T+ S+ +ACA   +L  G W HA
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHA 331

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           ++++     +     + N+LIDMY K GS+  A++VF  + K+D+ SWNSII G+A HG 
Sbjct: 332 HVIKSGGQPIA---YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 388

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL+ F++++ +    PN ITF+ VL+AC+H G++ EG+ YF++M  ++ I   + H+
Sbjct: 389 GAEALQLFEQML-KAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHH 446

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
             +VDLL RAG ++EA   +  MP+KP A +W +LL +C + H ++ L    A+Q+ E +
Sbjct: 447 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSC-RMHKNMDLGVYAAEQIFELD 505

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG +VLLS +YASA R +D   VRK+M + GV KEP CS +EI+   H F A D S
Sbjct: 506 PHD-SGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDS 564

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP  ++I    + I  K+K  GY PD S         D ++  L+ HSE+LA+A  +L  
Sbjct: 565 HPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQD-RELKLQYHSEKLALAFAVLKT 623

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PG+ IR+ KN+R+C DCH   K  SR+   EIIVRD  RFHHF  G CSC DYW
Sbjct: 624 PPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 152/294 (51%), Gaps = 7/294 (2%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +I  G++ P++  +   L  C YL    QG+  HAHI       D+ + N +++ YA CG
Sbjct: 95  LINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG 154

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            L+ A  +FD M  + +VSW V+I  + Q G+   AL LF +M  + F+P+ +T  S+  
Sbjct: 155 SLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLK 214

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           A     +   G   HA+ L+   +    +V V +SL+DMY +   +  A+ +F S+  ++
Sbjct: 215 ASGTGPSDHHGRQLHAFSLK---YGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SWN++I G A  G  E  ++ F ++ + + F P   T+  V +AC   G + +G+ + 
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFLQM-LRQGFEPTHFTYSSVFTACASSGSLEQGK-WV 329

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              + +    P+      L+D+ A++G+I +A  +   + +K D V W S++  
Sbjct: 330 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISG 382


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 332/585 (56%), Gaps = 24/585 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRV 89
           SS++S+ TE  S+    Q+H+ ALR  L        +   ++   + ++    +DYA +V
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGLASD---ACVSCGLVDMYAKSNIGQAMDYANKV 314

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++   +  +W  LI    +S   + + + LF  M+ + ++ P+  T+   LK+CA + 
Sbjct: 315 FERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNE-SIKPNHITYSSILKSCASIS 373

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G+Q HAH+ K    S   + N+L+  YA  G ++ A +VF+ + ERS      MI 
Sbjct: 374 DHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERS------MIP 427

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
              +  +F    ++ R M +       TF S+ SA A +  L+ G   HA  L+      
Sbjct: 428 CITEGRDFPLDHRIVR-MDVGISSS--TFASLISAAASVGMLTKGQQLHAMSLKA---GF 481

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +D  V+NSL+ MY +CG L+ A + F  +  R++ SW S+I G A HG AE AL  F  
Sbjct: 482 GSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHD 541

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +++     PN +T++ VLSAC+H G+V EG++YF  M  ++ + P +EHY C+VDLLAR+
Sbjct: 542 MILT-GVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARS 600

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G + EAL  ++ MP+K DA++W++LL A C+ H ++ + E  AK V+E E       YVL
Sbjct: 601 GIVKEALEFINEMPLKADALVWKTLLGA-CRSHDNIEVGEITAKNVVELEPRD-PAPYVL 658

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YA A  W++V  +R  M D  + KE G S +E++   HEF AGDTSHP+ + IYG 
Sbjct: 659 LSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGK 718

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           LD +  ++K  GY PD S   + D  D+ K+  L  HSE++A+A G++      PIR+FK
Sbjct: 719 LDTLVRQIKGMGYVPDTS-IVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFK 777

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH   K +S+    EII+RD  RFH  KDG CSC +YW
Sbjct: 778 NLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 172/357 (48%), Gaps = 22/357 (6%)

Query: 50  KQIHAQALRTALPQQ-----HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           + +H + LR  L  +     +  L +YSR    AS  ++    R    I      +W  +
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDI-----VSWTAM 122

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC-AYLFAFSQGKQAHAHIFK 163
               AR+  A+  +++L   M+E G +LP+ +T   A  AC  +      G      + K
Sbjct: 123 ASCLARN-GAERGSLLLIGEMLESG-LLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHK 180

Query: 164 RGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
            GL  +DV + ++LI   A  G L  A KVFD ++E+++V W ++I  +VQ    + A++
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 223 LFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           LF   ++  FEPD YT  S+ SAC  L ++ LG+  H+  LR     L +D  V+  L+D
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR---MGLASDACVSCGLVD 297

Query: 282 MYCKCG---SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           MY K     ++D A +VFE MPK D+ SW ++I G+   G  E  +      ++ ES  P
Sbjct: 298 MYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKP 357

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           N IT+  +L +C        GR     +I   N          LV + A +G ++EA
Sbjct: 358 NHITYSSILKSCASISDHDSGRQVHAHVIKS-NQASAHTVGNALVSMYAESGCMEEA 413



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 21/298 (7%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMS---QLKQIHAQALRTALPQQHKTLLIYSRII 75
           ++F    NE    NH +  S L  C S+S     +Q+HA  +++     H   +  + + 
Sbjct: 345 ALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHT--VGNALVS 402

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    ++ A RVF Q+         ++I       D       L  R++   +V    
Sbjct: 403 MYAESGCMEEARRVFNQLYE------RSMIPCITEGRD-----FPLDHRIVRM-DVGISS 450

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            TF   + A A +   ++G+Q HA   K G  SD +++NSL+  Y+ CG+L+ A + F+ 
Sbjct: 451 STFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNE 510

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           + +R+++SW  MI    + G  + AL LF  M +   +P+  T+ ++ SAC+ +  +  G
Sbjct: 511 LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREG 570

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
                 + R  DH L+  +     ++D+  + G +  A +    MP K D   W +++
Sbjct: 571 KEYFRSMQR--DHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLL 626


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 340/599 (56%), Gaps = 15/599 (2%)

Query: 20   IFNNNRNEGSFNNH---SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
            +F   R+ G   N    +SL+S+ T+   +   + IHA   +     ++   +  + +  
Sbjct: 418  VFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGF--EYDNTVCNALVTM 475

Query: 77   FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            +     +    RVF    N +  +WN L+       +     + +F +M+ +G   P+ +
Sbjct: 476  YMKIGSVQDGCRVFEATTNRDLISWNALLSG-FHDNETCDTGLRIFNQMLAEG-FNPNMY 533

Query: 137  TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
            TF   L++C+ L     GKQ HA I K  L  + ++  +L+  YA    L+ A  +F+ +
Sbjct: 534  TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 593

Query: 197  LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            ++R L +W V++  + Q G+ + A+K F +MQ    +P+ +T  S  S C+ +ATL  G 
Sbjct: 594  IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR 653

Query: 256  WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
              H+  ++        D+ V ++L+DMY KCG ++ A  VF+ +  RD  SWN+II G++
Sbjct: 654  QLHSMAIKAGQSG---DMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYS 710

Query: 316  LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             HG+   ALK F+ ++ +E   P+ +TF+GVLSAC+H G++ EG+ +F+ +   Y ITP 
Sbjct: 711  QHGQGGKALKAFEAML-DEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPT 769

Query: 376  LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            +EHY C+VD+L RAG   E    +  M +  + +IW ++L AC K H ++   E  A ++
Sbjct: 770  IEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGAC-KMHGNIEFGERAAMKL 828

Query: 436  IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
             E E  I S  Y+LLS ++A+   W+DV  VR LM+ +GV KEPGCS +E++G  H F +
Sbjct: 829  FELEPEIDSN-YILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLS 887

Query: 496  GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
             D SHP+ ++I+  L  + +KL S GYTP+ +   + +  D  KQ  L  HSERLA+A  
Sbjct: 888  HDGSHPKIREIHLKLQDLHQKLMSVGYTPN-TDHVLHNVSDREKQELLFYHSERLALAFA 946

Query: 556  ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +L+      IR+FKNLR+C DCH+  K IS I N E++VRD   FHHFK+GSCSC ++W
Sbjct: 947  LLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 185/400 (46%), Gaps = 25/400 (6%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLD 84
           ++G    +S +L +      +++ K IH Q +++ + P  H   L  S +  +A     +
Sbjct: 124 SKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSH---LWNSLVNVYAKCGSAN 180

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           YA +VF +I   +  +W  LI     +      A+ LF  M  +G V  ++ T+  ALKA
Sbjct: 181 YACKVFGEIPERDVVSWTALITGFV-AEGYGSGAVNLFCEMRREG-VEANEFTYATALKA 238

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C+       GKQ HA   K G  SD+++ ++L+  YA CG + LA +VF  M +++ VSW
Sbjct: 239 CSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSW 298

Query: 205 NVMIDAFVQFGEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           N +++ F Q G+ +  L LF RM   +I F    +T  ++   CA    L  G   H+  
Sbjct: 299 NALLNGFAQMGDAEKVLNLFCRMTGSEINFSK--FTLSTVLKGCANSGNLRAGQIVHSLA 356

Query: 262 LR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           +R  C+     D  ++  L+DMY KCG    A +VF  +   D+ SW++II      G++
Sbjct: 357 IRIGCE----LDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQS 412

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITPVLE 377
             A + F R+       PN  T   ++SA    G +  G      +     EY+ T    
Sbjct: 413 REAAEVFKRM-RHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVC-- 469

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               LV +  + G++ +   +      + D + W +LL  
Sbjct: 470 --NALVTMYMKIGSVQDGCRVFEATTNR-DLISWNALLSG 506


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 330/585 (56%), Gaps = 24/585 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRV 89
           SS++S+ TE  S+    Q+H+ ALR           +   ++   + ++    +DYA +V
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGFASD---ACVSCGLVDMYAKSNIEQAMDYANKV 314

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++   +  +W  LI    +S   + + +VLF  M+ + ++ P+  T+   LKACA + 
Sbjct: 315 FERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNE-SIKPNHITYSSILKACANIS 373

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G+Q HAH+ K    +   + N+L+  YA  G ++ A +VF+ + ERS++S      
Sbjct: 374 DHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS------ 427

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
             +  G          RM +       TF S+ SA A +  L+ G   HA  L+      
Sbjct: 428 -CITEGRDAPLDHRIGRMDMGISSS--TFASLISAAASVGMLTKGQQLHAMTLKA---GF 481

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +D  V+NSL+ MY +CG L+ A + F  +  R++ SW S+I G A HG AE AL  F  
Sbjct: 482 GSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHD 541

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +++     PN +T++ VLSAC+H G+V EG++YF  M  ++ + P +EHY C+VDLLAR+
Sbjct: 542 MILT-GVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARS 600

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G + EAL  ++ MP+K DA++W++LL A C+ H ++ + E  AK VIE E       YVL
Sbjct: 601 GLVKEALEFINEMPLKADALVWKTLLGA-CRSHDNIEVGEIAAKNVIELEPRD-PAPYVL 658

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YA A  W++V  +R  M D  + KE G S +E++   HEF AGDTSHP+ + IYG 
Sbjct: 659 LSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGK 718

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           LD +  ++K  GY PD S   + D  D+ K+  L  HSE++A+A G++      PIR+FK
Sbjct: 719 LDTLVGEIKGMGYVPDTS-IVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFK 777

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH   K +S+    EII+RD  RFH  KDG CSC +YW
Sbjct: 778 NLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 171/357 (47%), Gaps = 22/357 (6%)

Query: 50  KQIHAQALRTALPQQ-----HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           + +H + LR  L  +     +  L +YSR    AS  ++    R    I      +W  +
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDI-----VSWTAM 122

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC-AYLFAFSQGKQAHAHIFK 163
               AR+  A+ ++++L   M+E G +LP+ +T      AC  +      G      + K
Sbjct: 123 ASCLARN-GAERESLLLIGEMLESG-LLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHK 180

Query: 164 RGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
            GL  +D+ + ++LI   A  G L  A KVFD ++E+++V W ++I  +VQ    + A++
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 223 LFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +F   ++  FEPD YT  S+ SAC  L ++ LG+  H+  LR       +D  V+  L+D
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR---MGFASDACVSCGLVD 297

Query: 282 MYCKCG---SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           MY K     ++D A +VFE M K D+ SW ++I G+   G  E  +      ++ ES  P
Sbjct: 298 MYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKP 357

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           N IT+  +L AC +      GR     +I   N          LV + A +G ++EA
Sbjct: 358 NHITYSSILKACANISDHDSGRQVHAHVIKS-NQAAAHTVGNALVSMYAESGCMEEA 413


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 333/596 (55%), Gaps = 23/596 (3%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           GSF    +L+SSL+ C S+   K   QIH ++L+  +       +  + +  +A    L+
Sbjct: 414 GSF----TLISSLSSCASLKWAKLGQQIHGESLKLGIDLN--VSVSNALMTLYAETGYLN 467

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
              ++F  +   +  +WN++I A ARS  + P+A+V F      G  L ++ TF   L A
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKL-NRITFSSVLSA 526

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVS 203
            + L     GKQ H    K  +  +    N+LI  Y  CG +D   K+F  M ER   V+
Sbjct: 527 VSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVT 586

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI  ++       AL L   M Q     D + + ++ SA A +ATL  GM  HA  +
Sbjct: 587 WNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSV 646

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           R C   L +DV+V ++L+DMY KCG LD A + F +MP R+  SWNS+I G+A HG+ E 
Sbjct: 647 RAC---LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEE 703

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           ALK F+ + ++    P+ +TFVGVLSAC+H G++ EG  +F+ M + Y + P +EH+ C+
Sbjct: 704 ALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCM 763

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEEVAKQV--IESE 439
            D+L RAG +D+    +  MPMKP+ +IWR++L ACC+ +     L ++ A+ +  +E E
Sbjct: 764 ADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPE 823

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
             +    YVLL  +YA+  RW D+   RK M D  V KE G S + +    H F AGD S
Sbjct: 824 NAV---NYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKS 880

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP    IY  L  ++ K++  GY P  +  A+ D   + K+  L  HSE+LA+A  +   
Sbjct: 881 HPDADVIYKKLKELNRKMRDAGYVPQ-TGFALYDLEQENKEEILSYHSEKLAVAFVLAAQ 939

Query: 560 KPG-MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +   +PIR+ KNLRVC DCH   K IS+I   +II+RD  RFHHF+DG+CSC D+W
Sbjct: 940 RSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 189/419 (45%), Gaps = 27/419 (6%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQ-----LKQIHAQALRTALPQQHKTL 68
           Q  +  IF++ + +GS     +  S +T   S+++     L+QI     ++ L      L
Sbjct: 187 QRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTD---L 243

Query: 69  LIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            + S ++  FA    L YA +VF Q+E  N+ T N L+    R      +A  LF  M  
Sbjct: 244 FVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQ-KWGEEATKLFMDMNS 302

Query: 128 QGNVLPDKHTF---PFALKACAYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASC 183
             +V P+ +      F   + A      +G++ H H+   GLV   V I N L++ YA C
Sbjct: 303 MIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKC 362

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL---KLFRRMQILFEPDGYTFQS 240
           G +  A +VF  M ++  VSWN MI    Q G F  A+   K  RR  IL  P  +T  S
Sbjct: 363 GSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL--PGSFTLIS 420

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             S+CA L    LG   H   L+     +  +V V+N+L+ +Y + G L+  R++F SMP
Sbjct: 421 SLSSCASLKWAKLGQQIHGESLK---LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP 477

Query: 301 KRDLTSWNSIILGFALHGRA--EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           + D  SWNSII   A   R+  EA + + +     +    N ITF  VLSA +       
Sbjct: 478 EHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKL--NRITFSSVLSAVSSLSFGEL 535

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G+    + +   NI         L+    + G +D    + S M  + D V W S++  
Sbjct: 536 GKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 189/413 (45%), Gaps = 24/413 (5%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL-----KQIHAQ--ALRTALPQQHKTLLIYSRIIHFAS 79
           EG F+N  + +S L  C+ +  +     +QIH     L  A+      +LI    +++  
Sbjct: 96  EGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLIS---MYWKC 152

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF- 138
              + YA   F  IE  NS +WN++I   +++ D +  A  +F  M   G+  P ++TF 
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRS-AFRIFSSMQYDGS-RPTEYTFG 210

Query: 139 PFALKACAYLFA-FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
                AC+         +Q    I K GL++D+++ + L+  +A  G L  A KVF+ M 
Sbjct: 211 SLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQME 270

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGM 255
            R+ V+ N ++   V+    + A KLF  M  + +  P+ Y     +     LA   +G+
Sbjct: 271 TRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAE-EVGL 329

Query: 256 WAHAYILRHCDHSLVTDVLV--NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
                +  H   + + D +V   N L++MY KCGS+  AR+VF  M  +D  SWNS+I G
Sbjct: 330 KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITG 389

Query: 314 FALHG-RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
              +G   EA  +Y  + +      P S T +  LS+C        G+      + +  I
Sbjct: 390 LDQNGCFIEAVERY--KSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESL-KLGI 446

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
              +     L+ L A  G ++E   + S+MP + D V W S++ A  +   S+
Sbjct: 447 DLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGALARSERSL 498



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 19/389 (4%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +VF ++   N  +W  ++   +R+ + K +A+V  + M+++G +  +++ F   L+AC
Sbjct: 55  ARKVFDEMPLRNCVSWACIVSGYSRNGEHK-EALVFLRDMVKEG-IFSNQYAFVSVLRAC 112

Query: 146 AYLFAFSQ--GKQAHAHIFKRGLVSDVYINNSLIHFYASC-GHLDLANKVFDNMLERSLV 202
             + +     G+Q H  +FK     D  ++N LI  Y  C G +  A   F ++  ++ V
Sbjct: 113 QEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSV 172

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN +I  + Q G+  SA ++F  MQ     P  YTF S+ +    L    + +      
Sbjct: 173 SWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMC 232

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
                  L+TD+ V + L+  + K GSL  AR+VF  M  R+  + N +++G       E
Sbjct: 233 TIQ-KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGE 291

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE-----GRDYFDVMINEYNITPVL 376
            A K F  +      SP S  +V +LS+     +  E     GR+    +I    +  ++
Sbjct: 292 EATKLFMDMNSMIDVSPES--YVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMV 349

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
                LV++ A+ G+I +A  +   M  K D+V W S++    +    +   E V +   
Sbjct: 350 GIGNGLVNMYAKCGSIADARRVFYFMTDK-DSVSWNSMITGLDQNGCFI---EAVERYKS 405

Query: 437 ESEGGICSGVYVLLSRVYASAR-RWNDVG 464
                I  G + L+S + + A  +W  +G
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLG 434



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 184/387 (47%), Gaps = 22/387 (5%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           SL E   + + +++H   + T L      + I + +++ +A    +  A RVFY + + +
Sbjct: 322 SLAEEVGLKKGREVHGHVITTGLVDF--MVGIGNGLVNMYAKCGSIADARRVFYFMTDKD 379

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           S +WN++I    ++     +A+  ++ M  + ++LP   T   +L +CA L     G+Q 
Sbjct: 380 SVSWNSMITGLDQN-GCFIEAVERYKSM-RRHDILPGSFTLISSLSSCASLKWAKLGQQI 437

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE- 216
           H    K G+  +V ++N+L+  YA  G+L+   K+F +M E   VSWN +I A  +    
Sbjct: 438 HGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERS 497

Query: 217 FDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              A+  F   Q   +  +  TF S+ SA + L+   LG   H   L+   +++  +   
Sbjct: 498 LPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALK---NNIADEATT 554

Query: 276 NNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
            N+LI  Y KCG +D   ++F  M  +RD  +WNS+I G+ +H    A        +++ 
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY-IHNELLAKALDLVWFMLQT 613

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAG 390
               +S  +  VLSA      +  G +     ++  ++   LE        LVD+ ++ G
Sbjct: 614 GQRLDSFMYATVLSAFASVATLERGME-----VHACSVRACLESDVVVGSALVDMYSKCG 668

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
            +D AL   + MP++ ++  W S++  
Sbjct: 669 RLDYALRFFNTMPVR-NSYSWNSMISG 694



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 20/239 (8%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H+ ++K  L  DVY+ N+LI+ Y   G    A KVFD M  R+ VSW  ++  + + GE 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 218 DSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSL--GMWAHAYILRHCDHSLVTDV 273
             AL   R M  + +F  + Y F S+  AC  + ++ +  G   H  + +    S   D 
Sbjct: 84  KEALVFLRDMVKEGIF-SNQYAFVSVLRACQEIGSVGILFGRQIHGLMFK---LSYAVDA 139

Query: 274 LVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           +V+N LI MY KC GS+  A   F  +  ++  SWNSII  ++  G   +A + F  +  
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199

Query: 333 EESFSPNSITFVG-VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           + S  P   TF   V +AC+    ++E     DV + E  I   ++  G L DL   +G
Sbjct: 200 DGS-RPTEYTFGSLVTTACS----LTEP----DVRLLE-QIMCTIQKSGLLTDLFVGSG 248


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 339/590 (57%), Gaps = 45/590 (7%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYA 86
           ++++S L  C +   L   K +H+ A++++  ++     TLL +YS+        DLD A
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC------GDLDGA 305

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKAC 145
            RVF ++   N  +W ++I    R  D +   AI L Q+M ++G V  D       L AC
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTR--DGRSDGAIKLLQQMEKEG-VKLDVVAITSILHAC 362

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   +   GK  H +I    + S++++ N+L+  YA CG ++ AN VF  M+ + ++SWN
Sbjct: 363 ARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWN 422

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            MI      GE               +PD  T   +  ACA L+ L  G   H YILR+ 
Sbjct: 423 TMI------GEL--------------KPDSRTMACVLPACASLSALERGKEIHGYILRN- 461

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                +D  V N+L+D+Y KCG L +AR +F+ +P +DL SW  +I G+ +HG    A+ 
Sbjct: 462 --GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+ +  +    P+ ++F+ +L AC+H G++ +G  +F +M N++NI P LEHY C+VDL
Sbjct: 520 TFNEMR-DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDL 578

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L+R GN+ +A   +  +P+ PDA IW +LL  C + +  + L+E+VA++V E E    +G
Sbjct: 579 LSRTGNLSKAYEFMETLPIAPDATIWGALLCGC-RNYHDIELAEKVAERVFELEPE-NTG 636

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD-TSHPQTK 504
            YVLL+ +YA A +W +V  +R+ +  +G+ K PGCS IEI G  + F +G+ +SHP +K
Sbjct: 637 YYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSK 696

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
            I   L  +  K+K  G+ P  ++ A+++  +  K+ +L  HSE+LA+A G+L L P   
Sbjct: 697 NIESLLKKMRRKMKEEGHFPK-TKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCHE+ K +S+    EI++RD  RFHHFKDG CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 58/334 (17%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +  T+   L+ CA L +F+ GK+ H+ I    +  D  +   L+ FYA+CG L    +VF
Sbjct: 98  ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVF 157

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------------- 227
           D M ++++  WN M+  + + G+F  ++ LF+ M                          
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 228 -----------------------QILF---EPDGYTFQSITSACAGLATLSLGMWAHAYI 261
                                  Q+++   + D  T  S+   CA   TLSLG   H+  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++    S    +  +N+L+DMY KCG LD A +VFE M +R++ SW S+I G+   GR++
Sbjct: 278 IK---SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+K   ++  +E    + +    +L AC   G +  G+D  D  I   N+   L     
Sbjct: 335 GAIKLLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKANNMESNLFVCNA 392

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L+D+ A+ G+++ A  + S M +K D + W +++
Sbjct: 393 LMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMI 425



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 165/391 (42%), Gaps = 81/391 (20%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------- 129
           +A+  DL    RVF  +E  N + WN ++   A+  D K ++I LF+ M+E+G       
Sbjct: 144 YATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK-ESICLFKIMVEKGIEGKRPE 202

Query: 130 -------------------------------------------NVLPDKHTFPFALKACA 146
                                                       +  D  T    L  CA
Sbjct: 203 SAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
                S GK  H+   K      +  +N+L+  Y+ CG LD A +VF+ M ER++VSW  
Sbjct: 263 NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  + + G  D A+KL ++M+    + D     SI  ACA   +L  G   H YI    
Sbjct: 323 MIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA-- 380

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            +++ +++ V N+L+DMY KCGS++ A  VF +M  +D+ SWN++I              
Sbjct: 381 -NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------- 425

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVD 384
                       P+S T   VL AC     +  G++    ++ N Y+    + +   LVD
Sbjct: 426 --------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVD 475

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L  + G +  A  L   +P K D V W  ++
Sbjct: 476 LYVKCGVLGLARLLFDMIPSK-DLVSWTVMI 505


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 319/546 (58%), Gaps = 15/546 (2%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQGN 130
           S I  ++S   L+ A  VF ++E+ +  +W  +I   A  V  K P   V   +M+E   
Sbjct: 339 SLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI---ASLVSHKLPFKAVETYKMMELEG 395

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +LPD+ T    L ACA +     G + H    K GLVS V ++NSLI  Y+ C  +D A 
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           +VF N+  +++VSW  +I           AL  FR+M+   +P+  T  S+ SACA +  
Sbjct: 456 EVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGA 515

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA+ LR     +  D  + N+++DMY +CG    A   F S  K+D+T+WN +
Sbjct: 516 LMRGKEIHAHALRT---GVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNIL 571

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           + G+A  G+A+ A++ FD+++ E    P+ ITF+ +L AC+  GMV+EG +YF++M N+Y
Sbjct: 572 LTGYAQQGQAKLAVELFDKML-ELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKY 630

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
           N+TP L+HY C+VD+L RAG +D+A   + +MP++PDA IW +LL+A C+ H +V L E 
Sbjct: 631 NLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA-CRIHRNVELGEI 689

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            AK+V E +     G Y+LL  +YA    W+ V  VR LM ++G++ +PGCS +EI G  
Sbjct: 690 AAKRVFEKDNK-SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F +GD SH Q+K+I G LD    K+K  G+     +++   E++  +      HSER 
Sbjct: 749 HAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGN--LKSSFTSEIESSRADIFCGHSERQ 806

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G++N  PGMPI V KNL +C  CH + K IS I   EI VRD   +HHFKDG CSC
Sbjct: 807 AIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSC 866

Query: 611 MD--YW 614
            D  YW
Sbjct: 867 GDEGYW 872



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 177/340 (52%), Gaps = 9/340 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F  F +L  A+ VF ++   + F+WN L+   A++     +A+ L+ RM+    + P+ +
Sbjct: 142 FVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKA-GCFDEALNLYHRML-WAEIRPNVY 199

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TFP  LK CA +   ++GK+ HAH+ + G  SDV + N+LI  Y  CG +  A  +FD M
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            +R  +SWN MI  + + G     L+LF  M+ L  +PD  T  ++ SAC  L    LG 
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y+++        D+ +NNSLI MY   G L+ A  VF  M  +D+ SW ++I    
Sbjct: 320 GVHGYVVK---SEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            H     A++ + +++  E   P+ IT V VLSAC   G +  G    ++ I    ++ V
Sbjct: 377 SHKLPFKAVETY-KMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +     L+D+ ++   +D AL +  N+  K + V W SL+
Sbjct: 436 IVS-NSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLI 473



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 8/300 (2%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           QA+   + M+E   +  ++  +   L+ C +  A  +G + +  +        V + N+L
Sbjct: 80  QAMKRLESMLEL-RIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNAL 138

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           +  +   G+L  A  VF  M ER + SWNV++  + + G FD AL L+ RM      P+ 
Sbjct: 139 LSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNV 198

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           YTF S+   CAG++ ++ G   HA+++R       +DV V N+LI MY KCG +  AR +
Sbjct: 199 YTFPSVLKTCAGVSDIARGKEIHAHVIR---FGFESDVDVGNALITMYVKCGDISNARML 255

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+ MPKRD  SWN++I G+  +G     L+ F  ++ E S  P+ IT   V SAC     
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFS-MMRELSVDPDLITMTTVASACELLDN 314

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              GR     ++        +     L+ + +  G ++EA  + S M  K D V W +++
Sbjct: 315 ERLGRGVHGYVVKS-EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK-DVVSWTAMI 372



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 60/286 (20%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  +L+S L+ C  +  L   K+IHA ALRT +               F   A LD   R
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVG-----------FDGFLPNAILDMYVR 547

Query: 89  VFYQIENPNSFT--------WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
              ++   N F         WN L+   A+   AK  A+ LF +M+E   + PD+ TF  
Sbjct: 548 CGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAK-LAVELFDKMLEL-EIHPDEITFIS 605

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC+                K G+V++      L +F        + NK     L  +
Sbjct: 606 LLCACS----------------KSGMVTE-----GLEYFNI------MKNKY---NLTPN 635

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           L  +  ++D   + G+ D A    + M I   PD   + ++ +AC     + LG  A   
Sbjct: 636 LKHYACVVDILGRAGQLDDAYDFIQDMPI--RPDAAIWGALLNACRIHRNVELGEIAAKR 693

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
           +    + S+   +L    L ++Y  CG+ D   +V   M +R L++
Sbjct: 694 VFEKDNKSVGYYIL----LCNLYAGCGNWDKVSKVRSLMRERGLSA 735


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/632 (36%), Positives = 339/632 (53%), Gaps = 103/632 (16%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA---SFADLDYAFRVFYQI 93
           LS +  CKSM+QLKQIH+Q + T L       ++ ++II F       D++YA  VF  +
Sbjct: 23  LSLIKTCKSMAQLKQIHSQTICTGLISNP---IVPAQIIAFCCKHELGDMEYARMVFDTM 79

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             PN F WN +I+  +R V     A+ ++  M+E+G V+PD++T+PF LK      A   
Sbjct: 80  PGPNHFVWNNMIKGYSR-VGCPNSAVSMYCEMLERG-VMPDEYTYPFLLKRFTRDTAVKC 137

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G++ H HI K G  S+V++ N+LIH Y+  G + +A  VFD   +  +V+WNVMI  + +
Sbjct: 138 GRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNR 197

Query: 214 FGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
             +FD ++KLF    RM++L  P   T  S+ SAC+ L  L++G   H            
Sbjct: 198 SKQFDESMKLFDEMERMRVL--PSSITLVSVLSACSKLKDLNVGKRVH------------ 243

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                                 R  F+ MP+RD  SW ++I G+    R +  L  F R 
Sbjct: 244 ----------------------RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLF-RE 280

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEG---RDYFDVMINEYNITPVLEHYGCLVDLLA 387
           +   +  P+  T V +L+AC H G +  G   + Y D   NE  I   + +   L+D+  
Sbjct: 281 MQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDK--NEIKIDSFVGN--ALIDMYF 336

Query: 388 RAGNIDEALHL---------------------------------------------VSNM 402
             GN+++A+ +                                             + NM
Sbjct: 337 NCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVIKNM 396

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
           P+KP++++W SLL AC + H    ++E  A+Q++E E      VYVLL  +YA+  RW  
Sbjct: 397 PVKPNSIVWGSLLGAC-RVHRDEEMAEMAAQQILELEPE-NGAVYVLLCNIYAACNRWEK 454

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           +  VRKLM D+G+ K PGCS IE++G  HEF AGD  HPQ+K+IY  LD +   LK  GY
Sbjct: 455 LHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGY 514

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
           +PD S+   +D  ++ K+S++  HSE+LAIA G+++  PG+ IR+ KNLR+C DCH V K
Sbjct: 515 SPDTSEV-FLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAK 573

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L+S+++N E+IVRDR RFHHF+ GSCSC DYW
Sbjct: 574 LVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 605


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 338/590 (57%), Gaps = 45/590 (7%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYA 86
           ++++S L  C +   L   K +H+ A+++   ++     TLL +YS+        DLD A
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKC------GDLDGA 305

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKAC 145
            RVF ++   N  +W ++I    R  D +   AI L Q+M ++G V  D       L AC
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTR--DGRSDGAIRLLQQMEKEG-VKLDVVATTSILHAC 362

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   +   GK  H +I    + S++++ N+L+  Y  CG +D AN VF  M+ + ++SWN
Sbjct: 363 ARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWN 422

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            MI      GE               +PD  T   I  ACA L+ L  G   H YILR+ 
Sbjct: 423 TMI------GEL--------------KPDSRTMACILPACASLSALERGKEIHGYILRN- 461

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                +D  V N+L+D+Y KCG L +AR +F+ +P +DL SW  +I G+ +HG    A+ 
Sbjct: 462 --GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIA 519

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+ +  +    P+ ++F+ +L AC+H G++ +G  +F +M N++NI P LEHY C+VDL
Sbjct: 520 TFNEMR-DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDL 578

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L+R GN+ +A   +  +P+ PDA IW +LL   C+ +  + L+E+VA++V E E    +G
Sbjct: 579 LSRTGNLSKAYEFIETLPIAPDATIWGALLCG-CRIYHDIELAEKVAERVFELEPE-NTG 636

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG-DTSHPQTK 504
            YVLL+ +YA A +W +V  +R+ +  KG+ K PGCS IEI G  + F +G ++SHP +K
Sbjct: 637 YYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSK 696

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +I   L  +  K+K  GY P  ++ A+++  +  K+ +L  HSE+LA+A G+L L P   
Sbjct: 697 KIESLLKKMRRKMKEEGYFPK-TKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKT 755

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +RV KNLRVC DCHE+ K +S+    EI++RD  RFHHFK+G CSC  +W
Sbjct: 756 VRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 190/447 (42%), Gaps = 87/447 (19%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHA--QALRTALPQQHKTLLIYSRIIHFASFAD 82
           ++E     +SS+L      KS++  K++H+  ++   A+ +    +L    +  +A+  D
Sbjct: 94  KSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDE----VLGLKLVSLYATCGD 149

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------------- 129
           L    RVF  +E  N + WN ++   A+  D K ++I LF+ M+E+G             
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK-ESICLFKIMVEKGIEGKRPESASELF 208

Query: 130 -------------------------------------NVLPDKHTFPFALKACAYLFAFS 152
                                                 +  D  T    L  CA     S
Sbjct: 209 DKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLS 268

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GK  H+   K      +  +N+L+  Y+ CG LD A +VF+ M ER++VSW  MI  + 
Sbjct: 269 LGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + G  D A++L ++M+    + D     SI  ACA   +L  G   H YI     +++ +
Sbjct: 329 RDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA---NNMES 385

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           ++ V N+L+DMY KCGS+D A  VF +M  +D+ SWN++I                    
Sbjct: 386 NLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI-------------------- 425

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLARAG 390
                 P+S T   +L AC     +  G++    ++ N Y+    + +   LVDL  + G
Sbjct: 426 --GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCG 481

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
            +  A  L   +P K D V W  ++  
Sbjct: 482 VLGLARLLFDMIPSK-DLVSWTVMISG 507


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 338/589 (57%), Gaps = 43/589 (7%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYA 86
           ++++S L  C +   L   K +H+ A++++  ++     TLL +YS+        DLD A
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC------GDLDGA 305

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
            RVF ++   N  +W ++I    R       AI+L Q+M ++G V  D       L ACA
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRD-GWSDGAIILLQQMEKEG-VKLDVVAITSILHACA 363

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
              +   GK  H +I    + S++++ N+L+  YA CG ++ AN VF  M+ + ++SWN 
Sbjct: 364 RSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNT 423

Query: 207 MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           M+      GE               +PD  T   I  ACA L+ L  G   H YILR+  
Sbjct: 424 MV------GEL--------------KPDSRTMACILPACASLSALERGKEIHGYILRN-- 461

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               +D  V N+L+D+Y KCG L +AR +F+ +P +DL SW  +I G+ +HG    A+  
Sbjct: 462 -GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+ +  +    P+ ++F+ +L AC+H G++ +G  +F +M N++NI P LEHY C+VDLL
Sbjct: 521 FNEMR-DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 579

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
           +R GN+ +A   +  +P+ PDA IW +LL  C + +  + L+E+VA++V E E    +G 
Sbjct: 580 SRTGNLSKAYKFIETLPIAPDATIWGALLCGC-RIYHDIELAEKVAERVFELEPE-NTGY 637

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD-TSHPQTKQ 505
           YVLL+ +YA A +  +V  +R+ +  KG+ K PGCS IEI G  + F +G+ +SHP +K+
Sbjct: 638 YVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKK 697

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           I   L  +  K+K  GY P  ++ A+++  +  K+ +L  HSE+LA+A G+L L P   I
Sbjct: 698 IESLLKKMRRKMKEEGYFPK-TKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTI 756

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RV KNLRVC DCHE+ K +S+    EI++RD  RFHHFKDG CSC  +W
Sbjct: 757 RVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 151/334 (45%), Gaps = 58/334 (17%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +  T+   L+ CA L + + GK+ H+ I    +  D  +   L+ FYA+CG L    +VF
Sbjct: 98  ETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------------- 227
           D M ++++  WN M+  + + G+F  ++ LF+ M                          
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVI 217

Query: 228 -----------------------QILF---EPDGYTFQSITSACAGLATLSLGMWAHAYI 261
                                  Q+++   + D  T  S+   CA   TLSLG   H+  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++    S    +  +N+L+DMY KCG LD A +VFE M +R++ SW S+I G+   G ++
Sbjct: 278 IK---SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSD 334

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+    ++  +E    + +    +L AC   G +  G+D  D  I   N+   L     
Sbjct: 335 GAIILLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKANNMASNLFVCNA 392

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L+D+ A+ G+++ A  + S M +K D + W +++
Sbjct: 393 LMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMV 425



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 184/443 (41%), Gaps = 83/443 (18%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           ++E     + S+L      KS++  K++H+     ++       L    +  +A+  DL 
Sbjct: 94  KSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEA--LGLKLVSFYATCGDLK 151

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--------------- 129
              RVF  +E  N + WN ++   A+  D K ++I LF+ M+E+G               
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK-ESICLFKIMVEKGIEGKRPESASELFDK 210

Query: 130 -----------------------------------NVLPDKHTFPFALKACAYLFAFSQG 154
                                               +  D  T    L  CA     S G
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  H+   K      +  +N+L+  Y+ CG LD A +VF+ M ER++VSW  MI  + + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  D A+ L ++M+    + D     SI  ACA   +L  G   H YI     +++ +++
Sbjct: 331 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA---NNMASNL 387

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N+L+DMY KCGS++ A  VF +M  +D+ SWN+++                      
Sbjct: 388 FVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV---------------------- 425

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLARAGNI 392
               P+S T   +L AC     +  G++    ++ N Y+    + +   LVDL  + G +
Sbjct: 426 GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVL 483

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
             A  L   +P K D V W  ++
Sbjct: 484 GLARLLFDMIPSK-DLVSWTVMI 505


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 341/588 (57%), Gaps = 23/588 (3%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDYAFR 88
           + SL+++    +S+   + IHA     A  Q   ++ + + +IH      + AD   A R
Sbjct: 67  YHSLITACARYRSLDDARAIHAH---LAGSQFAGSVFLDNSLIHLYCKCGAVAD---ARR 120

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  +   +  +W +LI   A++ D   +A+ L   M+ +G   P+  TF   LKA    
Sbjct: 121 VFDGMPARDMCSWTSLIAGYAQN-DMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGAS 178

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +   G+Q HA   K     DVY+ ++L+  YA CG +D+A  VFD +  ++ VSWN +I
Sbjct: 179 ASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALI 238

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F + G+ ++ L +F  MQ   FE   +T+ S+ SA AG+  L  G W HA++++  + 
Sbjct: 239 AGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGER 298

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
                  V N+++DMY K GS+  AR+VF+ + K+D+ +WNS++  FA +G    A+ +F
Sbjct: 299 ---LSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHF 355

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +  +     N ITF+ +L+AC+H G+V EG+ YFD M+ EYN+ P ++HY  +VDLL 
Sbjct: 356 EEMR-KCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLG 413

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +++AL  +  MPMKP A +W +LL +C + H +  + +  A  V E +    +G  
Sbjct: 414 RAGLLNDALVFIFKMPMKPTAAVWGALLGSC-RMHKNAKIGQFAADHVFELDPDD-TGPP 471

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLL  +YAS  +W+    VRK+M   GV KEP CS +EI+   H F A D +HP++++IY
Sbjct: 472 VLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIY 531

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              + I  +++  GY P+     + VDE +  +Q+ L+ HSE++A+A  ++N+  G  IR
Sbjct: 532 KKWEEISIQIRKAGYVPNTDYVLLHVDEQE--RQAKLQYHSEKIALAFALINMPLGATIR 589

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + KN+R+C DCH   + IS++F  EI+VRD  RFHHF  GSCSC DYW
Sbjct: 590 IMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637


>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/579 (35%), Positives = 334/579 (57%), Gaps = 17/579 (2%)

Query: 44  KSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
           + + ++++ H   ++  L   P   + LL    +  +     ++YA  +F  ++ P +F 
Sbjct: 46  RGLDEVRKAHVANIKLGLDRSPPHLRPLLAACALGEWP--GSMEYAAAIFATLDEPEAFD 103

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           +NTL+R           A+ L+  M+   +V+PD +TFPF LKACA L AF QG+Q   H
Sbjct: 104 YNTLMRGHVVGGRDPAAALRLYVDMLHN-DVVPDGYTFPFVLKACAQLLAFRQGRQLQGH 162

Query: 161 IFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGEF 217
             K G +  D +  NSLI FY  CG  +LA + F+ M   ER+  SW+ ++ A+ + G +
Sbjct: 163 AMKLGFLEHDEHAQNSLISFYGKCGEPELARRAFEQMEAGERTAASWSALLAAYTKAGRW 222

Query: 218 DSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
              L+ F  M +  + PD  +  S  SACA L    +G   H  +LR+   ++  +  + 
Sbjct: 223 ADCLESFGAMVRDGWRPDESSMVSALSACAHLGAYDVGRSVHGALLRN---TVTLNTFME 279

Query: 277 NSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            SL+DMY KCG ++ A  VF+ M  K++  ++++++ G ALHG    ALK FD ++  E 
Sbjct: 280 TSLVDMYAKCGCIEKATAVFDGMDGKKNEWTYSAMVSGLALHGDGRKALKVFDAMI-SEG 338

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+   +VGVL+AC+  G++ EG   FD M  E  + P  +HYGC+VDL+ARAG +DEA
Sbjct: 339 HKPDEAVYVGVLNACSRSGLLEEGLRCFDRMRLERKVAPNAQHYGCMVDLMARAGRMDEA 398

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             L+ +MP  P    WRSLL+A C+ H  + L++   +++    G + +G Y++L+ ++A
Sbjct: 399 RELIGSMPTGPTDTAWRSLLNA-CRIHGDIELADRALQELARLGGAVNAGDYIILADMHA 457

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
            A+ W +   +R     +G+ + PG S++E+ G  H F + D SHP+T  IY  L  ++ 
Sbjct: 458 KAKNWEEAVALRTEAVHRGLAQAPGFSAVEVHGKMHRFTSQDRSHPRTADIYEMLHQMEW 517

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           +L+  GY PD S+ A+  + D+ K+ ++  HS++LA+A G+L+   G P+RV  NLR+ K
Sbjct: 518 QLRFEGYKPDTSEVALEAD-DEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRMSK 576

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +CH  + LIS IF  E++VRDR RFH F+ G CSC +YW
Sbjct: 577 ECHAYSALISEIFGREVVVRDRNRFHRFRRGGCSCGNYW 615


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 334/589 (56%), Gaps = 24/589 (4%)

Query: 35   SLLSSLTECKSMSQ----LKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
            ++ S L  C S+        QIHA A++  +     + +  + I  ++    ++ A  +F
Sbjct: 1038 TVASVLRACSSLEGGYYLATQIHACAMKAGVVLD--SFVSTALIDVYSKRGKMEEAEFLF 1095

Query: 91   YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
               +  +  +WN ++     S D  P+A+ L+  M E G    D+ T   A KA   L  
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDF-PKALRLYILMQESGE-RSDQITLVNAAKAAGGLVG 1153

Query: 151  FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              QGKQ HA + KRG   D+++ + ++  Y  CG ++ A +VF  +     V+W  MI  
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213

Query: 211  FVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHS 268
             V+ G+ + AL  + +M++   +PD YTF ++  AC+ L  L  G   HA I++ +C   
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNC--- 1270

Query: 269  LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
               D  V  SL+DMY KCG+++ AR +F+    R + SWN++I+G A HG A+ AL++F 
Sbjct: 1271 -AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFF- 1328

Query: 329  RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            + +      P+ +TF+GVLSAC+H G+VSE  + F  M   Y I P +EHY CLVD L+R
Sbjct: 1329 KYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSR 1388

Query: 389  AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SG 445
            AG I+EA  ++S+MP +  A ++R+LL+AC      V +  E  K+V E    +    S 
Sbjct: 1389 AGRIEEAEKVISSMPFEASASMYRTLLNAC-----RVQVDRETGKRVAEKLLALEPSDSA 1443

Query: 446  VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
             YVLLS VYA+A +W +V   R +M    V K+PG S +++    H F AGD SH +T  
Sbjct: 1444 AYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDV 1503

Query: 506  IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
            IY  ++ I ++++  GY PD +  A+VD  ++ K+ SL  HSE+LAIA G++   P   +
Sbjct: 1504 IYNKVEYIMKRIREEGYVPD-TDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTL 1562

Query: 566  RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            RV KNLRVC DCH   K IS++F  EI++RD  RFHHF++G CSC DYW
Sbjct: 1563 RVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 152/339 (44%), Gaps = 11/339 (3%)

Query: 85   YAFRVF-YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            YA ++F Y  +  +   WN  +    +  +A  +A+  F  MI    V  D  TF   L 
Sbjct: 886  YATKLFMYDDDGSDVIVWNKALSRFLQRGEAW-EAVDCFVDMI-NSRVACDGLTFVVMLT 943

Query: 144  ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
              A L     GKQ H  + + GL   V + N LI+ Y   G +  A  VF  M E  L+S
Sbjct: 944  VVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLIS 1003

Query: 204  WNVMIDAFVQFGEFDSALKLF-RRMQILFEPDGYTFQSITSACAGL-ATLSLGMWAHAYI 261
            WN MI      G  + ++ +F   ++    PD +T  S+  AC+ L     L    HA  
Sbjct: 1004 WNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACA 1063

Query: 262  LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            ++     +V D  V+ +LID+Y K G ++ A  +F +    DL SWN+I+ G+ + G   
Sbjct: 1064 MK---AGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFP 1120

Query: 322  AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             AL+ +  L+ E     + IT V    A      + +G+    V++       +    G 
Sbjct: 1121 KALRLY-ILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGV 1179

Query: 382  LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            L D+  + G ++ A  + S +P  PD V W +++  C +
Sbjct: 1180 L-DMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGCVE 1216



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 157/388 (40%), Gaps = 41/388 (10%)

Query: 35   SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
            S+L        +S  K+ HA+ L +     H    + + +I  +A    L  A ++F   
Sbjct: 661  SILRQAIAASDLSLGKRAHARILTSG---HHPDRFVTNNLITMYAKCGSLSSARKLFDTT 717

Query: 94   ENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
             + N    TWN ++ A A   D       LF R++ +  V   +HT     K C    + 
Sbjct: 718  PDTNRDLVTWNAILSALAAHADKSHDGFHLF-RLLRRSVVSTTRHTLAPVFKMCLLSASP 776

Query: 152  SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            S  +  H +  K GL  DV++  +L++ YA  G +  A  +FD M  R +V WNVM+ A+
Sbjct: 777  SASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAY 836

Query: 212  VQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            V    E+++ L      +  F PD  T ++++        +       AY  +       
Sbjct: 837  VDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK------- 889

Query: 271  TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                     + MY   GS              D+  WN  +  F   G A  A+  F  +
Sbjct: 890  ---------LFMYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDM 926

Query: 331  VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    + + +TFV +L+       +  G+    +++    +  V+    CL+++  +AG
Sbjct: 927  -INSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRS-GLDQVVSVGNCLINMYVKAG 984

Query: 391  NIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            ++  A  +   M  + D + W +++  C
Sbjct: 985  SVSRARSVFGQMN-EVDLISWNTMISGC 1011



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 17/199 (8%)

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           SI       + LSLG  AHA IL    H    D  V N+LI MY KCGSL  AR++F++ 
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHP---DRFVTNNLITMYAKCGSLSSARKLFDTT 717

Query: 300 P--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC--NHRGM 355
           P   RDL +WN+I+   A H        +  RL+     S    T   V   C  +    
Sbjct: 718 PDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPS 777

Query: 356 VSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW--- 411
            SE    + V I  ++++       G LV++ A+ G I EA  L   M ++ D V+W   
Sbjct: 778 ASESLHGYAVKIGLQWDVFVA----GALVNIYAKFGLIREARVLFDGMAVR-DVVLWNVM 832

Query: 412 -RSLLDACCKKHASVVLSE 429
            ++ +D C +  A ++ SE
Sbjct: 833 MKAYVDTCLEYEAMLLFSE 851


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 309/556 (55%), Gaps = 29/556 (5%)

Query: 77   FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            +    D+  +  +F Q+   ++ +WNT+I    R+   +  A+ L  +M+  G    +K 
Sbjct: 464  YLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRN-GCERVALELLYKMVAAGPAF-NKL 521

Query: 137  TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
            TF  AL   + L     GKQ H  + K G++ D ++ NSLI  Y  CG ++ A+ +F ++
Sbjct: 522  TFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHL 581

Query: 197  LERSL---------------VSWNVMIDAFVQFGEFDSALKLFRRM---QILFEPDGYTF 238
             + S                VSW+ M+  +VQ G F+ ALK F  M   Q+  E D +T 
Sbjct: 582  PQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQV--EVDKFTL 639

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             S+ SACA    L LG   H YI +   H L  DV + +S+IDMY KCGSL+ A  +F  
Sbjct: 640  TSVVSACASAGVLELGRQVHGYI-QKIGHGL--DVFLGSSIIDMYVKCGSLNDAWLIFNQ 696

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
               R++  W S+I G ALHG+   A++ F+ L++ E  +PN ++FVGVL+AC+H G++ E
Sbjct: 697  AKDRNVVLWTSMISGCALHGQGREAVRLFE-LMINEGITPNEVSFVGVLTACSHAGLLEE 755

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G  YF +M   Y I P  EH+ C+VDL  RAG ++E    + N  +   + +WRS L +C
Sbjct: 756  GCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSC 815

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
             + H ++ +   V K+++E E    +G Y+L S + A+  RW +   +R LM  +GV K 
Sbjct: 816  -RVHKNIEMGIWVCKKLLELEP-FDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKN 873

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            P  S I++    H F  GD SHPQ  +IY +LD +  +LK  GY+ D +   M D   + 
Sbjct: 874  PSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVT-PVMQDVEQEQ 932

Query: 539  KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
            +Q  L  HSE+LAIA GI++  PG PIRV KNLRVC DCH   K  S +   EII+RD  
Sbjct: 933  RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIH 992

Query: 599  RFHHFKDGSCSCMDYW 614
            RFHHFK G CSC DYW
Sbjct: 993  RFHHFKHGHCSCADYW 1008



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 179/393 (45%), Gaps = 62/393 (15%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A   +L+ A ++F +I   + F+W  LI   AR +      + LF +M +QG V P++ 
Sbjct: 331 YAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFAR-IGLSADVLGLFTKMQDQG-VCPNQF 388

Query: 137 TFPFALKACAYLFAFSQ-GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T    LK+C+     S+ GK  H  I + GL  D  +NNS++ +Y  C     A K+F  
Sbjct: 389 TLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGL 448

Query: 196 MLERSLVSWNVM-------------------------------IDAFVQFGEFDSALKLF 224
           M E+  VSWN+M                               ID  ++ G    AL+L 
Sbjct: 449 MAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELL 508

Query: 225 RRMQILFEP--DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
            +M +   P  +  TF       + L+ L LG   H  +L+     ++ D  V NSLIDM
Sbjct: 509 YKM-VAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLK---VGVLDDGFVRNSLIDM 564

Query: 283 YCKCGSLDIARQVFESMPKR---------------DLTSWNSIILGFALHGRAEAALKYF 327
           YCKCG ++ A  +F+ +P+                +  SW+S++ G+  +GR E ALK F
Sbjct: 565 YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDL 385
             ++  +    +  T   V+SAC   G++  GR     +     I   L+ +    ++D+
Sbjct: 625 SFMICSQ-VEVDKFTLTSVVSACASAGVLELGRQVHGYI---QKIGHGLDVFLGSSIIDM 680

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
             + G++++A  L+ N     + V+W S++  C
Sbjct: 681 YVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGC 712



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           HA + K G V      N L++ YA   +L+ A+K+F+ + +  + SW V+I  F + G  
Sbjct: 311 HAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLS 368

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS-LGMWAHAYILRHCDHSLVTDVLV 275
              L LF +MQ     P+ +T   +  +C+     S +G   H +ILR+    L  D ++
Sbjct: 369 ADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRN---GLDLDAVL 425

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           NNS++D Y KC     A ++F  M ++D  SWN ++  +   G  + ++  F +L  +++
Sbjct: 426 NNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDA 485

Query: 336 FSPNSI 341
            S N++
Sbjct: 486 ASWNTM 491


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 329/571 (57%), Gaps = 12/571 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +  LK++H  +L+      ++ L+  + +  +A    L YA RVF  I +    +WN LI
Sbjct: 408 LPNLKELHCYSLKQEFVHNNE-LVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALI 466

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              ++S D +      FQ  ++   +LPD  T    L AC+ + +   GK+ H  I +  
Sbjct: 467 GGYSQSSDPRLSLDAYFQ--MKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR 524

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L  D ++  SL+  Y  CG L  A+ +FD M +++LVSWN M++ ++Q G  + AL LFR
Sbjct: 525 LERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFR 584

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           +M +   +P   +  S+  AC+ L +L LG  AH Y L+     L  +  +  S+IDMY 
Sbjct: 585 QMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCL---LEDNAFIACSVIDMYA 641

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K GS+  + +VF  + +R + SWN++++G+ +HGRA+ A+K F+ +       P+ +TF+
Sbjct: 642 KNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQ-RTGHCPDELTFL 700

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN-MP 403
           GVL+ACNH G+V EG  Y D M   + + P L+HY C++D+L RAG +DEAL + +  M 
Sbjct: 701 GVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMS 760

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
            +P   IW  LL +C + H ++ + E++A ++  SE       YVLLS +YA + +W++V
Sbjct: 761 EEPGVGIWNFLLSSC-RIHKNLEMGEKIAAKLFVSEPEKPEN-YVLLSNLYAGSGKWDEV 818

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR+ M +  + K+ GCS IE++G    F AG++S    ++I     +++ ++   GY 
Sbjct: 819 RKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYR 878

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD S     D  ++ K   LR HSE+LAI  G++    G  +RV+KNLR+C DCH   KL
Sbjct: 879 PDTSSVQH-DLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKL 937

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++   EI+VRD  RFHHFK+G CSC DYW
Sbjct: 938 ISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 10/256 (3%)

Query: 69  LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
           ++ +R+I   S     D +  VF  +   N F WN +I + +R+ +     + +F +MI 
Sbjct: 118 VLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRN-ELYHNVLEMFVKMIT 176

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +  +LPD  TFP  +KACA +     G   H  + K  LV DV+++N+L+ FY + G + 
Sbjct: 177 ESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVS 236

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-----QILFEPDGYTFQSIT 242
            A +VF  M ER+LVSWN MI  F   G  +    L  +M     +I F PD  T  ++ 
Sbjct: 237 DALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVL 296

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
             CA    + +G   H   ++    SL  +V+VNN+L+DMY KCG ++ A+ +F+    +
Sbjct: 297 PVCARDREIGVGKGVHGLAMK---LSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNK 353

Query: 303 DLTSWNSIILGFALHG 318
           ++ SWN+++ GF+  G
Sbjct: 354 NVVSWNTMVGGFSAAG 369



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 142/268 (52%), Gaps = 11/268 (4%)

Query: 154 GKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           G++ H  + +   L +D  +   +I  Y+ CG  D +  VFD + +++L  WN +I ++ 
Sbjct: 100 GRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 213 QFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           +   + + L++F +M  +    PD +TF  +  ACAG++ + +G+  H  +++     LV
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVK---TRLV 216

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            DV V+N+L+  Y   GS+  A +VF+ MP+R+L SWNS+I  F+ +G +E       ++
Sbjct: 217 EDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQM 276

Query: 331 VVEE---SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + ++   +F+P+  T   VL  C     +  G+    + + + ++   +     L+D+ +
Sbjct: 277 MEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAM-KLSLDKEVVVNNALMDMYS 335

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G I++A  ++  +    + V W +++
Sbjct: 336 KCGCINDA-QVIFKLNNNKNVVSWNTMV 362



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 151/336 (44%), Gaps = 19/336 (5%)

Query: 43  CKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIENPNS 98
           C  +S+++    +H   ++T L +    + + + ++ F  +   +  A RVF  +   N 
Sbjct: 194 CAGVSEVQVGLAVHGLVVKTRLVED---VFVSNALVSFYGTNGSVSDALRVFKIMPERNL 250

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL---PDKHTFPFALKACAYLFAFSQGK 155
            +WN++IR  + +     +  +L  +M+E+ + +   PD  T    L  CA       GK
Sbjct: 251 VSWNSMIRVFSDN-GLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGK 309

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H    K  L  +V +NN+L+  Y+ CG ++ A  +F     +++VSWN M+  F   G
Sbjct: 310 GVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAG 369

Query: 216 EFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
           +      L R+M         D  T  +    C   + L      H Y L+     +  +
Sbjct: 370 DIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQ--EFVHNN 427

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK-YFDRLV 331
            LV N+ +  Y KCGSL  A +VF S+  + + SWN++I G++       +L  YF   +
Sbjct: 428 ELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQ--M 485

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
                 P+  T   +LSAC+    +  G++   ++I
Sbjct: 486 KSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLII 521



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 148/320 (46%), Gaps = 13/320 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           SLLS+ ++ KS+   K++H   +R  L  +  + +  S +  +    +L  A  +F  +E
Sbjct: 499 SLLSACSQIKSLKLGKEVHGLIIRNRL--ERDSFVYISLLSLYIHCGELSTAHVLFDAME 556

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           +    +WNT++    ++     +A+ LF++M+  G V P + +      AC+ L +   G
Sbjct: 557 DKTLVSWNTMVNGYLQN-GFPERALSLFRQMVLYG-VQPCEISMMSVFGACSLLPSLRLG 614

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           ++AH +  K  L  + +I  S+I  YA  G +  + KVF+ + ERS+ SWN M+  +   
Sbjct: 615 REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIH 674

Query: 215 GEFDSALKLFRRMQILFE-PDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHSLVT 271
           G    A+KLF  MQ     PD  TF  + +AC  +GL    L        L   + +L  
Sbjct: 675 GRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKH 734

Query: 272 DVLVNNSLIDMYCKCGSLDIARQV-FESMPKR-DLTSWNSIILGFALHGRAEAALKYFDR 329
              V    IDM  + G LD A ++  E M +   +  WN ++    +H   E   K   +
Sbjct: 735 YACV----IDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAK 790

Query: 330 LVVEESFSPNSITFVGVLSA 349
           L V E   P +   +  L A
Sbjct: 791 LFVSEPEKPENYVLLSNLYA 810


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/601 (36%), Positives = 347/601 (57%), Gaps = 21/601 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           IFN  +  G    H +  S +  C S+ +L   K +  +AL++        ++I + ++ 
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQ--IVITALMVA 339

Query: 77  FASFADLDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +   ++D A  +F  +E   N  +W  +I  C ++     QA+ LF +M  +G V P+ 
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQN-GGNDQAVNLFSQMRREG-VKPNH 397

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+   L     +F      + HA + K        +  +L+  Y   G+   A KVF+ 
Sbjct: 398 FTYSAILTVHYPVFV----SEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEI 453

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG-LATLSL 253
           +  + L++W+ M+  + Q GE + A KLF ++ +   +P+ +TF S+ +ACA   A    
Sbjct: 454 IEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQ 513

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   HAY ++     L   + V+++L+ MY K G++D A +VF+   +RDL SWNS+I G
Sbjct: 514 GKQFHAYAIKM---RLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISG 570

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           ++ HG+A+ AL+ FD +  + +   +++TF+GV++AC H G+V +G+ YF+ MIN+++I 
Sbjct: 571 YSQHGQAKKALEVFDEMQ-KRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHIN 629

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P ++HY C++DL +RAG +++A+ +++ MP  P A +WR+LL A  + H +V L E  A+
Sbjct: 630 PTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAA-RVHRNVELGELAAE 688

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           ++I  +    S  YVLLS +YA+A  W +   VRKLM  + V KEPG S IE+    + F
Sbjct: 689 KLISLQPED-SAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSF 747

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
            AGD +HP + QIY  L  +  +LK  GY PD ++    D  D+ K++ L  HSERLAIA
Sbjct: 748 LAGDLTHPLSNQIYSKLSELSIRLKDAGYQPD-TKNVFHDIEDEQKETILSHHSERLAIA 806

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            G++   P +PI++ KNLRVC DCH  TKL+S +    I+VRD  RFHHFKDG CSC DY
Sbjct: 807 FGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDY 866

Query: 614 W 614
           W
Sbjct: 867 W 867



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 14/323 (4%)

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N L+ + +R    K +A+ LF  ++   ++ PD+ T       CA       G+Q H   
Sbjct: 62  NQLLFSYSRDKQTK-EALNLFVSLL-HSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQC 119

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K GLV  V +  SL+  Y    +++   +VFD M ER++VSW  ++  +   G +    
Sbjct: 120 VKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVW 179

Query: 222 KLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           +LF +MQ  +E   P+ YT  ++ +A      + +G+  HA +++   H     + V NS
Sbjct: 180 ELFCQMQ--YEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK---HGFEEAIPVFNS 234

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           LI +Y + G L  AR VF+ M  RD  +WNS+I G+  +G+     + F+++ +     P
Sbjct: 235 LISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL-AGVKP 293

Query: 339 NSITFVGVLSAC-NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
             +TF  V+ +C + R +          + + +    ++     L+  L++   +D+AL 
Sbjct: 294 THMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV--ITALMVALSKCKEMDDALS 351

Query: 398 LVSNMPMKPDAVIWRSLLDACCK 420
           L S M    + V W +++  C +
Sbjct: 352 LFSLMEEGKNVVSWTAMISGCLQ 374



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 175/393 (44%), Gaps = 34/393 (8%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +Q+H Q ++  L       +  S +  +    +++   RVF ++   N  +W +L+   +
Sbjct: 113 RQVHCQCVKFGLVDH--VSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYS 170

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
            +         LF +M  +G VLP+++T    + A         G Q HA + K G    
Sbjct: 171 WN-GLYGYVWELFCQMQYEG-VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEA 228

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           + + NSLI  Y+  G L  A  VFD M  R  V+WN MI  +V+ G+     ++F +MQ+
Sbjct: 229 IPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL 288

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              +P   TF S+  +CA L  L+L        L+       TD +V  +L+    KC  
Sbjct: 289 AGVKPTHMTFASVIKSCASLRELALVKLMQCKALK---SGFTTDQIVITALMVALSKCKE 345

Query: 289 LDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           +D A  +F  M + +++ SW ++I G   +G  + A+  F ++   E   PN  T+  +L
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQM-RREGVKPNHFTYSAIL 404

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHY-------GCLVDLLARAGNIDEALHLVS 400
           +             ++ V ++E +   +  +Y         L+D   + GN  +A+ +  
Sbjct: 405 TV------------HYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFE 452

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
            +  K D + W ++L      +A    +EE AK
Sbjct: 453 IIEAK-DLMAWSAMLAG----YAQTGETEEAAK 480


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/581 (39%), Positives = 336/581 (57%), Gaps = 23/581 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTAL-PQQHK-------TLLIYSRIIHFASFADLDYA 86
           +LL  L +  +++Q   +HA  +R  L P ++         LL  + +  +A    L YA
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 87  FRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            RVF  +   N  TW+ LI     C+R      QA +LF+ M+ QG       +   AL+
Sbjct: 178 RRVFDAMPARNEVTWSALIGGFVLCSRMT----QAFLLFKAMLAQGLCFLSPTSIASALR 233

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           ACA L     G+Q HA + K G+ +D+   NSL+  YA  G +D A  +FD M  +  VS
Sbjct: 234 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           ++ ++  +VQ G  + A  +F++MQ    EPD  T  S+  AC+ LA L  G  +H  ++
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
                 L ++  + N+LIDMY KCG +D++RQVF  MP RD+ SWN++I G+ +HG  + 
Sbjct: 354 ---IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKE 410

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A   F  +     F P+ +TF+ +LSAC+H G+V EG+ +F VM + Y +TP +EHY C+
Sbjct: 411 ATALFLEMN-NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL+R G +DEA   + +MP++ D  +W +LL A C+ + ++ L ++V++ +I+  G  
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA-CRVYKNIDLGKKVSR-MIQELGPE 527

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G +VLLS +Y++A R+++   VR +   +G  K PGCS IEI+G  H F  GD SHPQ
Sbjct: 528 GTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQ 587

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
           + +IY  LD I   +K  GY PD S   + D  ++ K+ +L  HSE+LAIA GIL+L   
Sbjct: 588 SPEIYRELDNILVGIKKLGYQPDTS-FVLQDLEEEEKEKALICHSEKLAIAYGILSLSED 646

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             I V KNLRVC DCH V K IS +    IIVRD  RFHHF
Sbjct: 647 KTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 150/299 (50%), Gaps = 16/299 (5%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           V P+ +TFPFALKAC+ L     G+  H H    GL +D++++ +L+  Y  C  L  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI---LFEPDGYTFQSITSACAG 247
            +F  M  R LV+WN M+  +   G +  A+     MQ+      P+  T  ++    A 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 248 LATLSLGMWAHAYILRHCDH------SLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMP 300
              L+ G   HAY +R C H      S +TD VL+  +L+DMY KCGSL  AR+VF++MP
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSE 358
            R+  +W+++I GF L  R   A   F  ++ +     SP SI     L AC     +  
Sbjct: 186 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRM 243

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G +    ++ +  +   L     L+ + A+AG ID+A+ L   M +K D V + +L+  
Sbjct: 244 G-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 300


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 338/586 (57%), Gaps = 18/586 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+ S  +  S+S    +H + + +   Q     L    I  +     +D A +VF +   
Sbjct: 84  LICSCAQQNSLSDGLDVHRRLVSSGFDQD--PFLATKLINMYYELGSIDRARKVFDETRE 141

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY----LFAF 151
              + WN L RA A  V    + + L+ +M   G +  D+ T+ F LKAC      +   
Sbjct: 142 RTIYVWNALFRALAM-VGCGKELLDLYVQMNWIG-IPSDRFTYTFVLKACVVSELSVSPL 199

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +GK+ HAHI + G  +++++  +L+  YA  G +  AN VF  M  ++ VSW+ MI  F
Sbjct: 200 QKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACF 259

Query: 212 VQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            +      AL+LF+ M +      P+  T  ++  ACAGLA L  G   H YILR    S
Sbjct: 260 AKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDS 319

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           ++    V N+LI MY +CG + + ++VF++M  RD+ SWNS+I  + +HG  + A++ F+
Sbjct: 320 ILP---VLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFE 376

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            ++ + S SP+ I+F+ VL AC+H G+V EG+  F+ M+++Y I P +EHY C+VDLL R
Sbjct: 377 NMIHQGS-SPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGR 435

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           A  +DEA+ L+ +M  +P   +W SLL +C + H +V L+E  +  + E E    +G YV
Sbjct: 436 ANRLDEAIKLIEDMHFEPGPTVWGSLLGSC-RIHCNVELAERASTLLFELEPR-NAGNYV 493

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LL+ +YA A+ W++   V KL+  +G+ K PGCS IE+    + F + D  +PQ ++I+ 
Sbjct: 494 LLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHA 553

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L  +  ++K++GY P  +   + D  ++ K+  +  HSE+LA+A G++N   G  IR+ 
Sbjct: 554 LLVKLSNEMKAQGYVPQ-TNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIR 612

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR+C+DCH VTK IS+  N EI+VRD  RFHHFKDG CSC DYW
Sbjct: 613 KNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 163/345 (47%), Gaps = 25/345 (7%)

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           SF  L+ +  +   I+  N    N LI++  +  + K QAI L   +  + N  P + TF
Sbjct: 32  SFVSLNPSANLMNDIKGNN----NQLIQSLCKGGNLK-QAIHL---LCCEPN--PTQRTF 81

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              + +CA   + S G   H  +   G   D ++   LI+ Y   G +D A KVFD   E
Sbjct: 82  EHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRE 141

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACA----GLATLSL 253
           R++  WN +  A    G     L L+ +M  +  P D +T+  +  AC      ++ L  
Sbjct: 142 RTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQK 201

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   HA+ILR   H    ++ V  +L+D+Y K GS+  A  VF +MP ++  SW+++I  
Sbjct: 202 GKEIHAHILR---HGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 314 FALHGRAEAALKYFDRLVVEESFS-PNSITFVGVLSACNHRGMVSEGRDYFDVMINEY-- 370
           FA +     AL+ F  +++E   S PNS+T V VL AC     + +G+     ++     
Sbjct: 259 FAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLD 318

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +I PVL     L+ +  R G I     +  NM  + D V W SL+
Sbjct: 319 SILPVL---NALITMYGRCGEILMGQRVFDNMKNR-DVVSWNSLI 359


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/587 (36%), Positives = 324/587 (55%), Gaps = 50/587 (8%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           ++ Q KQIHA  ++T                HF     L      F    +P S  WN +
Sbjct: 90  TLEQTKQIHAHIIKT----------------HFHH--ALQIPLNDFPSGLSP-SAQWNFV 130

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I +  +    +P+  +     + + +   D    P  LKAC  +     GK+ H  + K+
Sbjct: 131 ITSYTKR--NQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKK 188

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW----NVMIDAFVQFGEFDSA 220
           GL  DV++ N+L+  Y  C  ++ A  VFD M+ER +VSW      ++D + + G    A
Sbjct: 189 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLA 248

Query: 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV---------- 270
            +LF     L +    ++ ++ + C     L  G       +R  + ++           
Sbjct: 249 RQLFNG---LTQKTVVSWTAMIAGCIRSNRLEEGT---KLFIRMQEENIFPNEITMLNKE 302

Query: 271 ---TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
               D ++N +L+DMY KCG ++ A ++F     RD+  WN+II GFA+HG  E AL  F
Sbjct: 303 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 362

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +   +   PN ITF+G+L AC+H G+V+EG+  F+ M++ + + P +EHYGC+VDLL 
Sbjct: 363 AEM-ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLG 421

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +DEA  ++ +MP+KP+ ++W +L+ A C+ H +  L E  A Q++E E   C G  
Sbjct: 422 RAGLLDEAHEMIKSMPIKPNTIVWGALV-AACRLHKNPQLGELAATQLLEIEPENC-GYN 479

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VL+S +YA+A RW+D   VRK M   G+ KEPG S IE++G  HEF  GD SHPQ ++I 
Sbjct: 480 VLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRIN 539

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
             L  +  KL   GY PD S   + +DE  + K+++L  HSE+LA+A G+++  P  PIR
Sbjct: 540 EMLAEMRRKLNEAGYVPDTSTVLLNIDE--EEKETALTYHSEKLAMAFGLISTAPSTPIR 597

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
           + KNLRVC DCH  TKL+S+I+   IIVRDR RFHHF++G CSC DY
Sbjct: 598 IVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 81/304 (26%)

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L    Q KQ HAHI K              HF+ +   L +    F + L  S   WN +
Sbjct: 88  LSTLEQTKQIHAHIIK-------------THFHHA---LQIPLNDFPSGLSPS-AQWNFV 130

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I ++ +  +  +AL ++ +++ + FE D +   S+  AC  ++   LG   H ++L+   
Sbjct: 131 ITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK--- 187

Query: 267 HSLVTDVLVNN-----------------------------------SLIDMYCKCGSLDI 291
             L  DV V N                                   +L+DMY KCG L +
Sbjct: 188 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGL 247

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           ARQ+F  + ++ + SW ++I G     R E   K F R+  EE+  PN IT         
Sbjct: 248 ARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRM-QEENIFPNEIT--------- 297

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
              M+++ R   D ++N             LVD+ A+ G+I+ A  L     +  D  +W
Sbjct: 298 ---MLNKERVEVDCILNT-----------ALVDMYAKCGDINAAGRLFIE-AISRDICMW 342

Query: 412 RSLL 415
            +++
Sbjct: 343 NAII 346


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/579 (37%), Positives = 337/579 (58%), Gaps = 14/579 (2%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENP 96
           SSL  C+++ Q++Q+HAQ    A     + L + +++++ +     L+ A  +F  +   
Sbjct: 58  SSLLSCRNLFQVRQVHAQ---IATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKR 114

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           + ++W+ ++   A+ V        +F+ ++  G  L D ++ P  ++AC  L     G+ 
Sbjct: 115 HPYSWSVIVGGYAK-VGNFFSCFWMFRELLRSGAPL-DDYSAPVVIRACRDLKDLKCGRL 172

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H    K GL    ++  +L+  YA C  ++ A+++F  M +R L +W VMI A  + G 
Sbjct: 173 IHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGV 232

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              +L  F RM+     PD     ++  ACA L  ++     HAYI     +SL  DV++
Sbjct: 233 PVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYI-NGTGYSL--DVIL 289

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             ++IDMY KCGS++ AR +F+ M  R++ +W+++I  +  HG+ E AL+ F  +++   
Sbjct: 290 GTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFP-MMLRSG 348

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PN ITFV +L AC+H G++ EG+ +F  M +EY +TP ++HY C+VDLL RAG +DEA
Sbjct: 349 ILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEA 408

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           L ++  MP++ D V+W +LL A C+ H  + L+E VA+ +++ +     G YVLLS +YA
Sbjct: 409 LEMIEGMPVEKDEVLWGALLGA-CRIHRHLDLAERVARSLLKLQSQK-PGHYVLLSNIYA 466

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           +A +W D+   R LMT  G+ K PG + IE+    ++F  GD +HP++ +IY  L  + E
Sbjct: 467 NAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGE 526

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           KL+  GY PD +   + D  ++ KQ  L  HSE+LAIA G+L L  G PIR+ KNLRVC 
Sbjct: 527 KLEVAGYHPD-TNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCG 585

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   K +S I    IIVRD  RFHHFK+G CSC DYW
Sbjct: 586 DCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 332/580 (57%), Gaps = 13/580 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
            L SL     +   KQIH+ A+R+ L          S +  +     L+ A  VF ++  
Sbjct: 117 FLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNM--YVKCGWLEGAELVFEKMSE 174

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N+  W  ++    ++ + +  A+ LF +M+ +G V  D++ F   LKACA L   + G+
Sbjct: 175 KNAVAWTGIMVGYTQA-ERQMDALALFAKMVNEG-VELDEYVFSIVLKACAGLEELNFGR 232

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H HI K GL S+V +   L+ FY  C +L+ A K F+ + E + VSW+ +I  + Q G
Sbjct: 233 QIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMG 292

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           EF+ ALK F  ++    + + +T+ SI  AC+ LA  + G  AHA  ++    SLV    
Sbjct: 293 EFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS---SLVAYQH 349

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             +++I MY +CG LD A +VFES+   D  +W +II G+A  G A  ALK F R+  + 
Sbjct: 350 GESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQ-DC 408

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              PN++TF+ VL+AC+H G+V EGR Y + M + Y +   ++HY C+VD+ +RAG + E
Sbjct: 409 GVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQE 468

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           AL L+ +MP  PDA+ W+ LL  C   + ++ + E  A+ + + +    +G Y+L+  +Y
Sbjct: 469 ALELIRSMPFSPDAMSWKCLLGGCW-TYRNLEIGELAAENLFQLDPEDTAG-YILMFNLY 526

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           AS  +W +   VRK+M ++ + KE  CS I + G  H F  GD  HPQT++IY  L+ ++
Sbjct: 527 ASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALN 586

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           + +  +  T   ++  + + L + K+  L +HSERLA+A G+++     P+ VFKNLR C
Sbjct: 587 DSV-IKEETGLLTEEDVSNSLPERKE-QLLVHSERLALAFGLISTPSSAPVVVFKNLRAC 644

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KDCH+  K +S I   EI+VRD  RFHHFK G CSC DYW
Sbjct: 645 KDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 179/385 (46%), Gaps = 11/385 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           ++  L  +  + KS+   +  H Q  RT   +     L  S +  +     L  A +VF 
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTV--KNPPEFLENSVLKMYCKCGSLADARKVFD 69

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   N  +WNT+I A A +     +   +F  M+E     P+  T+   L++       
Sbjct: 70  EMRERNLVSWNTIISAYAEN-GVFDKGFCMFSNMLEL-ETKPNGSTYIGFLRSLLNPSGL 127

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ H+H  + GL S+  +N ++ + Y  CG L+ A  VF+ M E++ V+W  ++  +
Sbjct: 128 EIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGY 187

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q      AL LF +M     E D Y F  +  ACAGL  L+ G   H +I++     L 
Sbjct: 188 TQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVK---LGLE 244

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           ++V V   L+D Y KC +L+ A + FE + + +  SW+++I G+   G  E ALK F+ L
Sbjct: 245 SEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESL 304

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
               S   NS T+  +  AC+     + G       I   ++         ++ + +R G
Sbjct: 305 RT-RSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS-SLVAYQHGESAMITMYSRCG 362

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
            +D A  +  ++   PDAV W +++
Sbjct: 363 RLDYATRVFESID-DPDAVAWTAII 386



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 7/296 (2%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E   +     ++    +AC  + +   G+  H  + +       ++ NS++  Y  CG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
           L  A KVFD M ER+LVSWN +I A+ + G FD    +F  M ++  +P+G T+     +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
               + L +G   H++ +R     L ++  VN ++ +MY KCG L+ A  VFE M +++ 
Sbjct: 121 LLNPSGLEIGKQIHSHAIR---SGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNA 177

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +W  I++G+    R   AL  F ++ V E    +   F  VL AC     ++ GR    
Sbjct: 178 VAWTGIMVGYTQAERQMDALALFAKM-VNEGVELDEYVFSIVLKACAGLEELNFGRQIHG 236

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            ++ +  +   +     LVD   +  N++ A      +  +P+ V W +L+   C+
Sbjct: 237 HIV-KLGLESEVSVGTPLVDFYVKCSNLESATKAFEWIS-EPNDVSWSALITGYCQ 290


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 340/614 (55%), Gaps = 33/614 (5%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLI 70
            T +  +F   R  G    H +  S LT    M+ L    Q+HA  LR+        + +
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRST---SVLNVFV 273

Query: 71  YSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTLIRA-----CARSVDAKPQAIVLFQR 124
            + ++ F S  D LD   R+F ++   ++ ++N +I A     CA +V      + LF+ 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATV------LRLFRE 327

Query: 125 MIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           M + G    D+   P+A  L     L     GKQ HA +   GL S+  + N+LI  Y+ 
Sbjct: 328 MQKLGF---DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 384

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
           CG LD A   F N  E+S +SW  +I  +VQ G+ + AL+LF  M+     PD  TF SI
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             A + LA + LG   H+Y++R       + V   + L+DMY KCG LD A + F+ MP+
Sbjct: 445 IKASSSLAMIGLGRQLHSYLIRS---GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R+  SWN++I  +A +G A+ A+K F+ ++    F+P+S+TF+ VL+AC+H G+  E   
Sbjct: 502 RNSISWNAVISAYAHYGEAKNAIKMFEGML-HCGFNPDSVTFLSVLAACSHNGLADECMK 560

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           YF +M ++Y+I+P  EHY C++D L R G   +   ++  MP K D +IW S+L +C + 
Sbjct: 561 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC-RI 619

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +  L+   A ++   E    +  YV+LS +YA A +W D   V+K+M D+GV KE G 
Sbjct: 620 HGNQELARVAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVRKESGY 678

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA-MVDELDDGKQ 540
           S +EI    + F + D + P   +I   LD + +++  +GY PD + A  MVD   + K 
Sbjct: 679 SWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDH--ELKL 736

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            SL+ HSERLAIA  ++N   G PIR+ KNL  C DCH V K+IS+I N +IIVRD  RF
Sbjct: 737 ESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRF 796

Query: 601 HHFKDGSCSCMDYW 614
           HHFKDG CSC DYW
Sbjct: 797 HHFKDGVCSCGDYW 810



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 177/377 (46%), Gaps = 43/377 (11%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+A+   +P  HK +   + I+  ++S  DL  A  +F    + N+ TW  ++RA A + 
Sbjct: 62  ARAMFDQMP--HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA-AA 118

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFP--FALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
                A+ LF+ M+ +G V+PD+ T      L  C            H    K GL + V
Sbjct: 119 GRTSDALSLFRAMLGEG-VIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHV 170

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
           ++ N+L+  Y   G L  A +VF  M ++  V++N M+    + G    AL+LF  M+  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 231 FEPDG-YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             P   +TF SI +  AG+A L LG   HA +LR      V +V VNNSL+D Y KC  L
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTS---VLNVFVNNSLLDFYSKCDCL 287

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           D  R++F+ MP+RD  S+N II  +A +  A   L+ F R + +  F    + +  +LS 
Sbjct: 288 DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF-REMQKLGFDRQVLPYATMLSV 346

Query: 350 CN-----------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
                        H  +V  G    D++ N             L+D+ ++ G +D A   
Sbjct: 347 AGSLPDVHIGKQIHAQLVLLGLASEDLLGN------------ALIDMYSKCGMLDAAKSN 394

Query: 399 VSNMPMKPDAVIWRSLL 415
            SN   K  A+ W +L+
Sbjct: 395 FSNRSEK-SAISWTALI 410


>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Brachypodium distachyon]
          Length = 622

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 339/580 (58%), Gaps = 19/580 (3%)

Query: 44  KSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
           + + ++++ HA+ ++  L   P+  + LL    +  +     ++YA  +F  ++ P +F 
Sbjct: 53  RGLDEVRKAHARHVKLGLDRSPRHARPLLAACALGSWP--GGMEYAAAIFAALDEPEAFD 110

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           +NTL+R    + D    A+ L+  M+EQG V PD++TFPF LKACA L A  QG+Q H H
Sbjct: 111 YNTLMRGHV-AHDDPAAALRLYAAMLEQG-VEPDRYTFPFVLKACARLAASGQGRQLHGH 168

Query: 161 IFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDA--FVQFGE 216
           + K G    D ++ NSLI FY  CG  +LA + F+ M  E S  + +       + + G 
Sbjct: 169 VAKLGFSQHDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTTAASWSALLAAYTRAGL 228

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           +   L  F  M +    P+  +  S  SACA L    +G   H  +LR+   ++  +  +
Sbjct: 229 WADCLDSFGAMARAGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRN---TVALNTFM 285

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             SL+DMY KCG +D A  VF++M  ++  ++++++ G ALHG    AL+ FD +   E 
Sbjct: 286 ETSLVDMYAKCGCIDKASAVFDAMDGKNEWTYSAMVSGLALHGDGLKALQVFDAMA-REG 344

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+   +VG+L+AC+  G++ EG   FD M  E+ + P  +HYGC+VDL+ARAG +D+A
Sbjct: 345 HKPDEAVYVGILNACSRSGLLEEGLRCFDRMRLEHKVAPNAQHYGCMVDLMARAGRLDDA 404

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             L+ +MP  P    WRSLL+AC + H +V L+E  A Q +   G + +G YV+L+ ++A
Sbjct: 405 RALIGSMPTGPTDAAWRSLLNAC-RIHGNVELAER-ALQGLSGIGAVNAGDYVILADMHA 462

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
             + W+    +R    ++G+ + PG S++E+ G AH F + D SHP+T +IY  L  ++ 
Sbjct: 463 RTKNWDAAAALRTEAANRGLAQAPGFSAVEVHGRAHRFASQDRSHPRTAEIYEMLHQMEW 522

Query: 516 KLKSRGYTPDYSQAAMV-DELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           +L+  GY PD S+ A+  D  ++ K+ ++  HS++LA+A G+L+   G P+RV  NLR+ 
Sbjct: 523 QLRFEGYEPDTSEVALTRDAGEEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRMS 582

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+CH  + LIS IF  E++VRDR RFH F+ G+CSC +YW
Sbjct: 583 KECHAYSALISEIFGREVVVRDRNRFHRFRRGACSCRNYW 622


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/635 (37%), Positives = 343/635 (54%), Gaps = 80/635 (12%)

Query: 49  LKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           LK++H++ L       + +L I   +  +A+  +  Y   +F +I + N   +N +IR+ 
Sbjct: 54  LKKLHSKILIDQNLHPNPSLGI-KLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSY 112

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK----- 163
             +      A+++F+ M  QG   PD +T+P  LKAC+       G Q H  + K     
Sbjct: 113 VNN-GLYQDALLVFKTMANQG-FYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDM 170

Query: 164 -----RGLVS---------------------DVYINNSLIHFYASCGHLD---------- 187
                 GLVS                     D+   NS++  YA  G  +          
Sbjct: 171 NLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREME 230

Query: 188 -----------------LANKVFDNML----------ERSLVSWNVMIDAFVQFGEFDSA 220
                            + N   DN+L          E+SL+SWNVMI  +V     + A
Sbjct: 231 DLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEA 290

Query: 221 LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           + L+ +MQ+   EPD  +  S+  AC  L+   LG   H Y+ R     L  ++L+ N+L
Sbjct: 291 VDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERK---KLRPNLLLENAL 347

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           IDMY KCG L  AR VF+ M  RD+ SW S+I  + + G+ + A+  F ++  +  F+P+
Sbjct: 348 IDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMR-DSGFTPD 406

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            I FV VL+AC+H G+V EGR  F++M  EY ITP +EHY C+VDLL RAG IDEA HL 
Sbjct: 407 WIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLT 465

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MPM+P+  +W SLL AC + ++S+ ++   A  + +      SG YVLLS +YA A R
Sbjct: 466 RQMPMEPNERVWGSLLSAC-RVYSSMNIALLAADHLFQLAPEQ-SGYYVLLSNIYAKAGR 523

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W DV  VR +M  KG+ K PG S++EI+   + F AGD SH Q+K+IY  L ++  ++K 
Sbjct: 524 WQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKE 583

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GY P+ + +A+ D  ++ K+  L +HSE+LAI   ILN KPG  IR+ KN+RVC DCH 
Sbjct: 584 LGYMPE-TDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHV 642

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            TKLIS+I   EII+RD  RFHHF+DG CSC DYW
Sbjct: 643 ATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 27/307 (8%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLK-QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           G FN+      +L  C+ M  LK +  A  + + LP    T           S  ++ Y 
Sbjct: 217 GRFND------ALKLCREMEDLKLKPDAGTMGSLLPAVTNT-----------SCDNVLYV 259

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
             +F +++  +  +WN +I       +A P +A+ L+ +M   G V PD  +    L AC
Sbjct: 260 KDMFVKLKEKSLISWNVMIAVYVN--NAMPNEAVDLYLQMQVHG-VEPDAVSISSVLPAC 316

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             L A   G++ H ++ ++ L  ++ + N+LI  YA CG L  A  VFD M+ R +VSW 
Sbjct: 317 GDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWT 376

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI A+   G+   A+ LF++M+   F PD   F S+ +AC+    +  G +    +   
Sbjct: 377 SMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLM--- 433

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAA 323
            ++ +   +   N ++D+  + G +D A  +   MP + +   W S++    ++     A
Sbjct: 434 AEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIA 493

Query: 324 LKYFDRL 330
           L   D L
Sbjct: 494 LLAADHL 500


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 317/567 (55%), Gaps = 14/567 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +Q+HA++L+  LP      ++ S +  +A    L  A RVF ++ +P++ +W  LI A  
Sbjct: 138 EQLHARSLK--LPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYM 195

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
            + D + +A+ + +     G + PD  T    L ACA +   + G+       + G+   
Sbjct: 196 DAGDLR-EAVHVARNAFANG-MRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQS 253

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V++  + +  Y  CG +  A +VFD M ++  V+W  M+  +   G    AL LF  MQ 
Sbjct: 254 VFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQA 313

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCG 287
               PD Y      SAC  L  L LG  A    +R  D    + + ++  +LIDMY KCG
Sbjct: 314 EGVRPDCYAVAGALSACTRLGALDLGRQA----IRMVDWDEFLDNPVLGTALIDMYAKCG 369

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           S   A  VF+ M K+D+  WN++ILG  + G  + A     ++  +     N  TF+G+L
Sbjct: 370 STAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQME-KSGVKLNDNTFIGLL 428

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
            +C H G++ +GR YF  M   Y+I+P +EHYGC+VDLL+RAG + EA  L+ +MPM  +
Sbjct: 429 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPAN 488

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           AVI  +LL  C K H +  L+E V  Q+I  E    SG YV+LS +Y++  RW D   +R
Sbjct: 489 AVILGALLGGC-KIHRNAELAEHVLTQLIRLEP-WNSGNYVMLSNIYSNRGRWEDAAKLR 546

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
             M +KGV K P CS +E +G  HEF  GD SHP + QIY  LD +  ++K+ GY P  +
Sbjct: 547 LDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPT-T 605

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           +  M D  D+ K+ +L  HSE+LAIA  +L   PG  IRV KNLRVC DCH   KLISRI
Sbjct: 606 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRI 665

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + EIIVRD  RFH F+DGSCSC DYW
Sbjct: 666 THREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 133 PDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P   TFP ALK+ + L      G+Q HA   K    ++ ++  SL+  YA CG L  A +
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           VFD M   S VSW  +I A++  G+   A+ + R        PD +T   + +ACA +A 
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 251 LSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           L+ G  +W  A         +   V V  + +D+Y KCG +  AR+VF+ M  +D  +W 
Sbjct: 235 LATGETVWRAAE-----QEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWG 289

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-I 367
           +++ G+A +G    AL  F  +   E   P+     G LSAC   G +  GR    ++  
Sbjct: 290 AMVGGYASNGHPREALDLFLAMQA-EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 348

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +E+   PVL     L+D+ A+ G+  EA  +   M  K D ++W +++
Sbjct: 349 DEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQM-RKKDIIVWNAMI 393


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 316/578 (54%), Gaps = 12/578 (2%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           +LT C  +  L    A  +R       + + + S ++H ++    +  A RVF  +   +
Sbjct: 117 ALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKD 176

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
              W+T++ A   S     +A+ ++ RM E G V  D+      ++AC        G   
Sbjct: 177 HVAWSTMV-AGFVSAGRPVEALGMYSRMREHG-VAEDEVVMVGVIQACTLTGNTRMGASV 234

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H    + G+  DV I  SL+  YA  GH D+A +VF  M  R+ VSWN +I  F Q G  
Sbjct: 235 HGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHA 294

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           D AL LFR M     +PD     S   ACA +  L LG   H +ILR  +   +    + 
Sbjct: 295 DEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCI----LG 350

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            +++DMY KCGSL+ AR++F  +  RDL  WN++I     HG    AL  F  L  E   
Sbjct: 351 TAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELN-ETGI 409

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+  TF  +LSA +H G+V EG+ +FD MI E+ I P  +H  C+VDLLAR+G ++EA 
Sbjct: 410 KPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEAN 469

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
            ++++M  +P   IW +LL  C   +  + L E +AK+++ES+     GV  L+S +YA+
Sbjct: 470 EMLASMHTEPTIPIWVALLSGCLN-NKKLELGETIAKKILESQPEDI-GVLALVSNLYAA 527

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A++W+ V  +RKLM D G  K PG S IE+ G  H F   D SHPQ ++I   +  +  +
Sbjct: 528 AKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFE 587

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           ++  GY P  ++    D  +D K+  L  HSERLAIA G+LN  PG  + + KNLRVC D
Sbjct: 588 MRKMGYVP-RTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGD 646

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH+  K IS+I + EI+VRD  RFHHFKDG+CSC DYW
Sbjct: 647 CHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 156/325 (48%), Gaps = 12/325 (3%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            WN L+   ARS    P A +   R +   +  PD  TF  AL ACA L      +    
Sbjct: 79  AWNALL--AARSRAGSPGAALRVFRALPS-SARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
             F  G   DV++ ++L+H Y+ CG +  A +VFD M  +  V+W+ M+  FV  G    
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL ++ RM +     D      +  AC       +G   H   LR   H +  DV++  S
Sbjct: 196 ALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLR---HGMRMDVVIATS 252

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+DMY K G  D+ARQVF  MP R+  SWN++I GFA +G A+ AL  F R +      P
Sbjct: 253 LVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLF-REMSTSGLQP 311

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           +S   V  L AC   G +  G+     ++       +L     ++D+ ++ G+++ A  L
Sbjct: 312 DSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILG--TAVLDMYSKCGSLESARKL 369

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHA 423
            + +  + D V+W +++ ACC  H 
Sbjct: 370 FNKLSSR-DLVLWNAMI-ACCGTHG 392



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 8/243 (3%)

Query: 175 SLIHFYASCGHLDLANKVFD-NMLERSLV-SWNVMIDAFVQFGEFDSALKLFRRMQILFE 232
           SL   YA  G LD A      +   RS + +WN ++ A  + G   +AL++FR +     
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSAR 108

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           PD  TF    +ACA L  L     A A  +R        DV V ++L+ +Y +CG++  A
Sbjct: 109 PDSTTFTLALTACARLGDLDA---AEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDA 165

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
            +VF+ MP++D  +W++++ GF   GR   AL  + R+  E   + + +  VGV+ AC  
Sbjct: 166 IRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRM-REHGVAEDEVVMVGVIQACTL 224

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
            G    G       +       V+     LVD+ A+ G+ D A  +   MP + +AV W 
Sbjct: 225 TGNTRMGASVHGRFLRHGMRMDVVIATS-LVDMYAKNGHFDVARQVFRMMPYR-NAVSWN 282

Query: 413 SLL 415
           +L+
Sbjct: 283 ALI 285


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/532 (37%), Positives = 311/532 (58%), Gaps = 13/532 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA--LK 143
           A ++FY++   +  ++N L+   A +   K +++ LF+ +   G    D+  FPFA  L 
Sbjct: 353 ASKLFYEMPEVDGISYNVLVTCYAWNGRVK-ESLELFKELQFTGF---DRRNFPFATLLS 408

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
             A       G+Q H+       +S++ + NSL+  YA CG    AN++F ++  +S V 
Sbjct: 409 IAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVP 468

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           W  MI ++VQ G  +  LKLF  MQ      D  T+ SI  ACA LA+L+LG   H++I+
Sbjct: 469 WTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHII 528

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
                  +++V   ++L+DMY KCGS+  A Q+F+ MP R+  SWN++I  +A +G  + 
Sbjct: 529 ---GSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDC 585

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
            L+ F+ +V      P+S++ + +L AC+H G+V EG  YFD M   Y + P  EHY   
Sbjct: 586 TLRLFEEMV-RSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYAST 644

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           +D+L R G  DEA  L++ MP +PD ++W S+L++C   H +  L+++ A Q+   +   
Sbjct: 645 IDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSC-GIHKNQELAKKAANQLFNMKVLR 703

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +  YV +S +YA+A  W++VG V+K M ++GV K P  S +EI    H F A D +HPQ
Sbjct: 704 DAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQ 763

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            ++I   LD ++EK+  +GY PD S  A+ +  ++ K  SL+ HSER+AIA  +++   G
Sbjct: 764 MREIMKKLDELEEKMVKKGYKPD-SSCALHNVDEEVKVESLKYHSERIAIAFALISTPEG 822

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PI V KNLR C DCH   K+IS+I   EI VRD +RFHHF+DG C+C DYW
Sbjct: 823 SPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 192/390 (49%), Gaps = 21/390 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFADLDYAFRVFYQ 92
           ++LLS  TE  S+++++Q+H+  ++        TL++ + ++  +     L  AF++F  
Sbjct: 202 ATLLSGFTEFDSVNEVRQVHSHVIKLGYDS---TLVVSNSLLDSYCKTRSLGLAFQLFND 258

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I   +S T+N L+   ++      +AI LF +M E G   P + TF   L A   L    
Sbjct: 259 IPERDSVTFNALLTGYSKE-GFNREAINLFFKMQEVG-YRPTEFTFAAILTAGIQLDDIE 316

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H  + K   V +V++ N+L+ FY+    +  A+K+F  M E   +S+NV++  + 
Sbjct: 317 FGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYA 376

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G    +L+LF+ +Q   F+   + F ++ S  A    L +G   H+        ++VT
Sbjct: 377 WNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHS-------QTIVT 429

Query: 272 D----VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           D    +LV NSL+DMY KCG    A ++F  +  +    W ++I  +   G  E  LK F
Sbjct: 430 DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLF 489

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +        ++ T+  ++ AC     ++ G+     +I    I+ V      LVD+ A
Sbjct: 490 VEM-QRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSG-SALVDMYA 547

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + G+I +AL +   MP++ ++V W +L+ A
Sbjct: 548 KCGSIKDALQMFQEMPVR-NSVSWNALISA 576



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 179/370 (48%), Gaps = 12/370 (3%)

Query: 54  AQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ L   +P  HK +    + I+ +    +L  A  +F  +    + TW  LI   A++ 
Sbjct: 120 ARKLFDEMP--HKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNN 177

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
             + +A  LF  M   G + PD  +    L       + ++ +Q H+H+ K G  S + +
Sbjct: 178 QFR-EAFGLFIEMGRHG-IDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVV 235

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILF 231
           +NSL+  Y     L LA ++F+++ ER  V++N ++  + + G    A+ LF +MQ + +
Sbjct: 236 SNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGY 295

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            P  +TF +I +A   L  +  G   H ++++ C+   V +V V N+L+D Y K   +  
Sbjct: 296 RPTEFTFAAILTAGIQLDDIEFGQQVHGFVVK-CN--FVWNVFVANALLDFYSKHDRVVE 352

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           A ++F  MP+ D  S+N ++  +A +GR + +L+ F  L     F   +  F  +LS   
Sbjct: 353 ASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQF-TGFDRRNFPFATLLSIAA 411

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
               +  GR      I    I+ +L     LVD+ A+ G   EA  + S++ ++  +V W
Sbjct: 412 ISLNLDIGRQIHSQTIVTDAISEILVG-NSLVDMYAKCGEFGEANRIFSDLAIQ-SSVPW 469

Query: 412 RSLLDACCKK 421
            +++ +  +K
Sbjct: 470 TAMISSYVQK 479



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 135/269 (50%), Gaps = 10/269 (3%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM- 227
           +++  N++I  Y   G+L  A  +FD+M +R+ V+W ++I  + Q  +F  A  LF  M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKC 286
           +   +PD  +  ++ S      +++     H+++++   D +LV    V+NSL+D YCK 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLV----VSNSLLDSYCKT 246

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
            SL +A Q+F  +P+RD  ++N+++ G++  G    A+  F ++  E  + P   TF  +
Sbjct: 247 RSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKM-QEVGYRPTEFTFAAI 305

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           L+A      +  G+     ++ + N    +     L+D  ++   + EA  L   MP + 
Sbjct: 306 LTAGIQLDDIEFGQQVHGFVV-KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP-EV 363

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           D + +  L+  C   +  V  S E+ K++
Sbjct: 364 DGISYNVLV-TCYAWNGRVKESLELFKEL 391


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 341/589 (57%), Gaps = 13/589 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           +  F+++ + +++  E +++ + +Q+HA  ++     +    L    II +     LD A
Sbjct: 38  DARFHDYDAAITACVERQALGEGRQVHAHMVKARY--RPPVYLATRLIILYVRCGALDDA 95

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
             V   +   N  +W  +I   ++S     +A+ LF RM+  G    ++ T    L +C 
Sbjct: 96  RNVLDGMPERNVVSWTAMISGYSQS-GRHAEALELFIRMLRAG-CKANEFTLATVLTSCP 153

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
              +  Q +Q H+ + K    S +++ +SL+  Y   G++  A KVFD + ER  VS   
Sbjct: 154 VHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTA 213

Query: 207 MIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           +I  + Q G  D AL LFR++     + +  TF ++ ++ +GLA+L+ G   H  ILR  
Sbjct: 214 IISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRK- 272

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              L   +++ NSLIDMY KCG L  +R+VF++MP+R   SWN++++G+  HG  +  ++
Sbjct: 273 --ELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQ 330

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F R + EE   P+S+T + VLS C+H G+V EG D FD+++ E N    + HYGC++DL
Sbjct: 331 LF-RTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDL 388

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L R+G + +AL L+ +MP +P   IW SLL AC + H +V + E VA+++++ E G  +G
Sbjct: 389 LGRSGQLQKALDLIEHMPFEPTPAIWGSLLGAC-RVHINVSVGEVVAQKLLDMEPG-NAG 446

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            YV+LS +YA+A  W DV  VRKLM +  VTKEP  S I +D + H F + +  HP+ K 
Sbjct: 447 NYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKD 506

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           I   +  +   +K+ G+ PD S   + D  D+ K+  L  HSE+LAI  G++N  PG+ I
Sbjct: 507 INAKIKEVYVDVKAAGFVPDLS-CVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTI 565

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +V KNLR+C DCH   K +S+++  EI +RD+ RFH  KDG+C+C DYW
Sbjct: 566 QVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 317/567 (55%), Gaps = 14/567 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +Q+HA++L+  LP      ++ S +  +A    L  A RVF ++ +P++ +W  LI A  
Sbjct: 91  EQLHARSLK--LPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYM 148

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
            + D + +A+ + +     G + PD  T    L ACA +   + G+       + G+   
Sbjct: 149 DAGDLR-EAVHVARNAFANG-MRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQS 206

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V++  + +  Y  CG +  A +VFD M ++  V+W  M+  +   G    AL LF  MQ 
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQA 266

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCG 287
               PD Y      SAC  L  L LG  A    +R  D    + + ++  +LIDMY KCG
Sbjct: 267 EGVRPDCYAVAGALSACTRLGALDLGRQA----IRMVDWDEFLDNPVLGTALIDMYAKCG 322

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           S   A  VF+ M K+D+  WN++ILG  + G  + A     ++  +     N  TF+G+L
Sbjct: 323 STAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQME-KSGVKLNDNTFIGLL 381

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
            +C H G++ +GR YF  M   Y+I+P +EHYGC+VDLL+RAG + EA  L+ +MPM  +
Sbjct: 382 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPAN 441

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           AVI  +LL  C K H +  L+E V  Q+I  E    SG YV+LS +Y++  RW D   +R
Sbjct: 442 AVILGALLGGC-KIHRNAELAEHVLTQLIRLEP-WNSGNYVMLSNIYSNRGRWEDAAKLR 499

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
             M +KGV K P CS +E +G  HEF  GD SHP + QIY  LD +  ++K+ GY P  +
Sbjct: 500 LDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPT-T 558

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           +  M D  D+ K+ +L  HSE+LAIA  +L   PG  IRV KNLRVC DCH   KLISRI
Sbjct: 559 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRI 618

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + EIIVRD  RFH F+DGSCSC DYW
Sbjct: 619 THREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 133 PDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P   TFP ALK+ + L      G+Q HA   K    ++ ++  SL+  YA CG L  A +
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           VFD M   S VSW  +I A++  G+   A+ + R        PD +T   + +ACA +A 
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 251 LSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           L+ G  +W  A         +   V V  + +D+Y KCG +  AR+VF+ M  +D  +W 
Sbjct: 188 LATGETVWRAAE-----QEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWG 242

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-I 367
           +++ G+A +G    AL  F  +   E   P+     G LSAC   G +  GR    ++  
Sbjct: 243 AMVGGYASNGHPREALDLFLAMQA-EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 301

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +E+   PVL     L+D+ A+ G+  EA  +   M  K D ++W +++
Sbjct: 302 DEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQM-RKKDIIVWNAMI 346


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/618 (35%), Positives = 339/618 (54%), Gaps = 57/618 (9%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF---YQIENP 96
           L +   +S L+QIHAQ +  AL        + + +IH    A      R+    Y   +P
Sbjct: 81  LNQRPKLSPLQQIHAQVVTQALSSNAS---LTASLIHCYLCAKNHPNARILFDHYPSPSP 137

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIE---QGNVLPDKHTFPFALKACAYLFAFSQ 153
               WN +IR  ++  +++ + I LF RM+       V+PD++TF F + +C++  +   
Sbjct: 138 PIKLWNVMIRTYSKIRNSQ-EPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIY 196

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+  H  + K G  S++Y+ NS+I+  +    ++ A KVF+ M ER + SW  ++  + +
Sbjct: 197 GEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAK 256

Query: 214 FGEFDSALKLFRRMQILFE----------------PDGYTF-----------------QS 240
            GE D A +LF  M +  +                P+  TF                   
Sbjct: 257 HGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVC 316

Query: 241 ITSACAGLATLSLGMWAHAYI----LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           + SACA L  L  G W H YI    +R   +       ++ +LIDMY KCG +D A +VF
Sbjct: 317 VLSACAHLGALDQGNWIHLYIDKIGIRQSSN-------ISTALIDMYAKCGRIDCASRVF 369

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
             + KRD+ S+ S+I G + HG  + AL+ F +++ +E+  PN IT +GVL+ C+H G+V
Sbjct: 370 NGICKRDVLSFTSMISGLSYHGLGKDALRVFYQML-DENVMPNEITILGVLNGCSHSGLV 428

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            EG      M + + I P +EHYGC +DLL RAG ++ AL +V  MPM+PD VIWR+LL 
Sbjct: 429 EEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLS 488

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           A  + H +V L E++   + + +    +G  VLLS +YAS  RW  V  +RKLM D+   
Sbjct: 489 AS-RIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSE 547

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
             PGCS IE++G+ HEF   D  HPQ  +I   L+ I ++L   GY+ +  Q +  D  +
Sbjct: 548 SSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSF-DLNE 606

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
           + K+ ++  HSE+LAIA G+++ +PG  IR+ KNLR C+DCH   K IS+++  EI+VRD
Sbjct: 607 EEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRD 666

Query: 597 RARFHHFKDGSCSCMDYW 614
           R+RFH F +G CSC D+W
Sbjct: 667 RSRFHTFIEGDCSCKDFW 684


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 339/591 (57%), Gaps = 18/591 (3%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR---IIHFASFADLDY 85
           +F +++++L+     +++ + +++HA  ++T     H    +Y R   I+ +     L  
Sbjct: 57  NFQDYNTVLNECLRKRAIREGQRVHAHMIKT-----HYLPCVYLRTRLIVFYVKCDSLRD 111

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF  +   N  +W  +I A ++   A  QA+ LF +M+  G   P++ TF   L +C
Sbjct: 112 ARHVFDVMPERNVVSWTAMISAYSQRGYAS-QALSLFVQMLRSGTE-PNEFTFATVLTSC 169

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
                F  G+Q H+HI K    + VY+ +SL+  YA  G +  A  +F  + ER +VS  
Sbjct: 170 IGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCT 229

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  + Q G  + AL+LFRR+Q       Y T+ S+ +A +GLA L  G   H ++LR 
Sbjct: 230 AIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRS 289

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               + + V++ NSLIDMY KCG+L  AR++F+++ +R + SWN++++G++ HG     L
Sbjct: 290 ---EVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVL 346

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLV 383
           + F+ ++ E    P+S+T + VLS C+H G+  +G D ++D+   + ++ P  +HYGC+V
Sbjct: 347 ELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVV 406

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           D+L RAG ++ A   V  MP +P A IW  LL A C  H+++ + E V  Q+++ E    
Sbjct: 407 DMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGA-CSVHSNLDIGEFVGHQLLQIEPE-N 464

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +G YV+LS +YASA RW DV  +R LM  K VTKEPG S IE+D + H F A D SHP+ 
Sbjct: 465 AGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRR 524

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           +++   +  +  + K  GY PD S   + D  ++ K+  L  HSE+LA+  G++     +
Sbjct: 525 EEVSAKVQELSARFKEAGYVPDLS-CVLHDVDEEQKEKILLSHSEKLALTFGLIATPESV 583

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLR+C DCH   K  S+I+  E+ +RD+ RFH    G CSC DYW
Sbjct: 584 PIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 309/532 (58%), Gaps = 11/532 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  +F  +   +  +WN++I A + S  +  QA+  F +M+  G  L  + TF   L A 
Sbjct: 390 AAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGL-SRVTFINILSAV 448

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSW 204
           + L       Q HA + K  L  D  I N+L+  Y  CG ++   K+F  M E R  VSW
Sbjct: 449 SSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSW 508

Query: 205 NVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N MI  ++       A+ L +  MQ     D +TF +I SACA +ATL  GM  HA  +R
Sbjct: 509 NSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIR 568

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
            C   L +DV+V ++L+DMY KCG +D A + FE MP R++ SWNS+I G+A HG  E A
Sbjct: 569 AC---LESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKA 625

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           LK F R++++    P+ +TFVGVLSAC+H G V EG ++F  M   Y ++P +EH+ C+V
Sbjct: 626 LKLFTRMMLDGQ-PPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMV 684

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEEVAKQVIESEGGI 442
           DLL RAG +DE    +++MPMKP+ +IWR++L ACC+ +  +  L    A+ ++E E   
Sbjct: 685 DLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQN 744

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
               YVLL+ +YAS  +W DV   R  M +  V KE GCS + +    H F AGD  HP+
Sbjct: 745 AVN-YVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPE 803

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
              IY  L  ++ K++  GY P  ++ A+ D   + K+  L  HSE++A+A  +L  +  
Sbjct: 804 KDLIYDKLRELNRKMRDAGYIPQ-TKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSA 861

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +PIR+ KNLRVC DCH     IS+I   +I++RD  RFHHF+DG CSC DYW
Sbjct: 862 LPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 160/332 (48%), Gaps = 30/332 (9%)

Query: 48  QLKQIHAQALRTALPQQ---HKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           + +++H Q+++           TL+ IY RI       DL  A ++F ++ N N  TW  
Sbjct: 117 EARELHLQSIKYGFVGNLFLSNTLINIYVRI------GDLGSAQKLFDEMSNRNLVTWAC 170

Query: 104 LIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKAC--AYLFAFSQGKQAHAH 160
           LI    +  + KP +A   F+ M+  G  +P+ + F  AL+AC  +       G Q H  
Sbjct: 171 LISGYTQ--NGKPDEACARFRDMVRAG-FIPNHYAFGSALRACQESGPSGCKLGVQIHGL 227

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLAN---KVFDNMLERSLVSWNVMIDAFVQFGEF 217
           I K    SDV + N LI  Y SC  LD AN    VFD +  R+ +SWN +I  + + G+ 
Sbjct: 228 ISKTRYGSDVVVCNVLISMYGSC--LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDA 285

Query: 218 DSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD--VLV 275
            SA  LF  MQ   E  G++F+    A +  + L  G      +  H   + + D  V +
Sbjct: 286 VSAYDLFSSMQK--EGLGFSFKP-NDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAI 342

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            N L++MY K G++  A  VFE M ++D  SWNS+I G   +  +E A + F  +   + 
Sbjct: 343 GNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQ 402

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            S NS+  +G LS  +    VS+   YF  M+
Sbjct: 403 VSWNSV--IGALS--DSEASVSQAVKYFLQMM 430



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 136/277 (49%), Gaps = 25/277 (9%)

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           + ++ H    K G V +++++N+LI+ Y   G L  A K+FD M  R+LV+W  +I  + 
Sbjct: 117 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHSL 269
           Q G+ D A   FR M +  F P+ Y F S   AC  +G +   LG+  H  I +      
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISK---TRY 233

Query: 270 VTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            +DV+V N LI MY  C  S + AR VF+ +  R+  SWNSII  ++  G A +A   F 
Sbjct: 234 GSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFS 293

Query: 329 RLVVEE---SFSPNSITFVGVLSACNHRGMVSEGRD-----YFDVMINEYNITPVLEHYG 380
            +  E    SF PN         A +   ++ EGR      +  V+    N   V    G
Sbjct: 294 SMQKEGLGFSFKPN--------DAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG 345

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            LV++ A++G I +A  +   M ++ D+V W SL+  
Sbjct: 346 -LVNMYAKSGAIADACSVFELM-VEKDSVSWNSLISG 380



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 40  LTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIEN 95
           L+ C S++ L+   ++HA  +R  L      +++ S ++  ++    +DYA R F  +  
Sbjct: 547 LSACASVATLERGMEVHACGIRACLESD---VVVGSALVDMYSKCGRIDYASRFFELMPL 603

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N ++WN++I   AR    + +A+ LF RM+  G   PD  TF   L AC+++    +G 
Sbjct: 604 RNVYSWNSMISGYARHGHGE-KALKLFTRMMLDGQP-PDHVTFVGVLSACSHVGFVEEGF 661

Query: 156 Q---AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDA 210
           +   + + +++  L   V   + ++      G LD      ++M ++ +++ W  ++ A
Sbjct: 662 EHFKSMSEVYR--LSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 718


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 340/614 (55%), Gaps = 33/614 (5%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLI 70
            T +  +F   R  G    H +  S LT    M+ L    Q+HA  LR+        + +
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRST---SVLNVFV 273

Query: 71  YSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTLIRA-----CARSVDAKPQAIVLFQR 124
            + ++ F S  D LD   R+F ++   ++ ++N +I A     CA +V      + LF+ 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATV------LRLFRE 327

Query: 125 MIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           M + G    D+   P+A  L     L     GKQ HA +   GL S+  + N+LI  Y+ 
Sbjct: 328 MQKLGF---DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 384

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
           CG LD A   F N  E+S +SW  +I  +VQ G+ + AL+LF  M+     PD  TF SI
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             A + LA + LG   H+Y++R       + V   + L+DMY KCG LD A + F+ MP+
Sbjct: 445 IKASSSLAMIGLGRQLHSYLIRS---GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R+  SWN++I  +A +G A+ A+K F+ ++    F+P+S+TF+ VL+AC+H G+  E   
Sbjct: 502 RNSISWNAVISAYAHYGEAKNAIKMFEGML-HCGFNPDSVTFLSVLAACSHNGLADECMK 560

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           YF +M ++Y+I+P  EHY C++D L R G   +   ++  MP K D +IW S+L +C + 
Sbjct: 561 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC-RI 619

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +  L+   A ++   E    +  YV+LS +YA A +W D   V+K+M D+GV KE G 
Sbjct: 620 HGNQELARVAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVRKESGY 678

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA-MVDELDDGKQ 540
           S +EI    + F + D + P   +I   LD + +++  +GY PD + A  MVD   + K 
Sbjct: 679 SWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDH--ELKL 736

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            SL+ HSERLAIA  ++N   G PIR+ KNL  C DCH V K+IS+I N +IIVRD  RF
Sbjct: 737 ESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRF 796

Query: 601 HHFKDGSCSCMDYW 614
           HHFKDG CSC DYW
Sbjct: 797 HHFKDGVCSCGDYW 810



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 177/377 (46%), Gaps = 43/377 (11%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+A+   +P  HK +   + I+  ++S  DL  A  +F    + N+ TW  ++RA A + 
Sbjct: 62  ARAMFDQMP--HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA-AA 118

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFP--FALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
                A+ LF+ M+ +G V+PD+ T      L  C            H    K GL + V
Sbjct: 119 GRTSDALSLFRAMLGEG-VIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHV 170

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
           ++ N+L+  Y   G L  A +VF  M ++  V++N M+    + G    AL+LF  M+  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 231 FEPDG-YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             P   +TF SI +  AG+A L LG   HA +LR      V +V VNNSL+D Y KC  L
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTS---VLNVFVNNSLLDFYSKCDCL 287

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           D  R++F+ MP+RD  S+N II  +A +  A   L+ F R + +  F    + +  +LS 
Sbjct: 288 DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF-REMQKLGFDRQVLPYATMLSV 346

Query: 350 CN-----------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
                        H  +V  G    D++ N             L+D+ ++ G +D A   
Sbjct: 347 AGSLPDVHIGKQIHAQLVLLGLASEDLLGN------------ALIDMYSKCGMLDAAKSN 394

Query: 399 VSNMPMKPDAVIWRSLL 415
            SN   K  A+ W +L+
Sbjct: 395 FSNRSEK-SAISWTALI 410


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 333/598 (55%), Gaps = 19/598 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH 76
           + N  + EG   +  ++ S L  C     +     IH   L+  L      + + + +I+
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD---VFVSNALIN 265

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            ++ F  L  A  VF Q+E  +  +WN++I A  ++ D  P   + F + ++ G + PD 
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND--PSTALRFFKGMQLGGIRPDL 323

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFD 194
            T        + L      +     + +R  L  DV I N+L++ YA  G+++ A+ VFD
Sbjct: 324 LTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFD 383

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLS 252
            +  +  +SWN ++  + Q G    A+  +  M+   +  P+  T+ SI  A + +  L 
Sbjct: 384 QLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQ 443

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            GM  HA ++++   SL  DV V   LID+Y KCG L+ A  +F  +P+     WN+II 
Sbjct: 444 QGMKIHAKLIKN---SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIA 500

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
              +HGR E AL+ F  ++ E     + ITFV +LSAC+H G+V EG+  FD+M  EY I
Sbjct: 501 SLGIHGRGEEALQLFKDMLAER-VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P L+HYGC+VDLL RAG +++A  LV NMP++PDA IW +LL A CK + +  L    +
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSA-CKIYGNAELGTLAS 618

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            +++E +     G YVLLS +YA+  +W  V  VR L  D+G+ K PG SS+ +   A  
Sbjct: 619 DRLLEVDSENV-GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEV 677

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F+ G+ +HP+  +IY  L ++  K+KS GY PDYS     D  +D K+  L  HSERLAI
Sbjct: 678 FYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQ-DIEEDEKEQILNSHSERLAI 736

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A GI++  P  PIR+FKNLRVC DCH  TK ISRI   EI+VRD  RFHHFKDG CSC
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 15/377 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTW 101
           C +++  K++HA  L     Q    +++ +++I+ + +  D+  +   F  I   N F+W
Sbjct: 32  CVNVNATKKLHALLLVFGKSQN---IVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSW 88

Query: 102 NTLIRACARSVDAKPQAIVLFQ--RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           N++I A  R          + Q   M   G++ PD +TFP  LKAC  L     GK+ H 
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKKVHC 145

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            +FK G   DV++  SL+H Y+  G LD+A+KVF +M  + + SWN MI  F Q G    
Sbjct: 146 CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAG 205

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL +  RM+    + D  T  SI   CA    +  G+  H ++L+   H L +DV V+N+
Sbjct: 206 ALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK---HGLDSDVFVSNA 262

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           LI+MY K G L  A+ VF+ M  RDL SWNSII  +  +     AL++F  + +     P
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL-GGIRP 321

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + +T V + S  +        R     +I    +   +     LV++ A+ G ++ A  +
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 399 VSNMPMKPDAVIWRSLL 415
              +P K D + W +L+
Sbjct: 382 FDQLPRK-DTISWNTLV 397


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/595 (37%), Positives = 340/595 (57%), Gaps = 20/595 (3%)

Query: 26  NEGSFNNHSSLLSS-LTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           N GS     +L S  L +C  + +LKQ   IHA    +        L++ + I++ +A  
Sbjct: 97  NCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDD---LVLLNFILNMYAKC 153

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             L+ A  +F ++   +  +W  LI   ++S  A  +A+ LF +M+  G   P++ T   
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQAS-EALALFPKMLHLG-FQPNEFTLSS 211

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            LKA     +   G+Q HA   K G   +V++ +SL+  YA   H+  A  +F+++  ++
Sbjct: 212 LLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +VSWN +I    + GE +  ++LF +M +  FEP  +T+ S+  ACA   +L  G W HA
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHA 330

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           ++++     +     + N+LIDMY K GS+  A++VF  + K+D+ SWNSII G+A HG 
Sbjct: 331 HVIKSGGQPIA---YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 387

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL+ F++++ +    PN ITF+ VL+AC+H G++ EG+ YF++M  ++ I   + H+
Sbjct: 388 GAEALQLFEQML-KAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHH 445

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
             +VDLL RAG ++EA   +  MP+KP A +W +LL AC + H ++ L    A+Q+ E +
Sbjct: 446 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGAC-RMHKNMDLGVYAAEQIFELD 504

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG +VLLS +YASA R +D   VRK+M + GV KEP CS +EI+   H F A D S
Sbjct: 505 PHD-SGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDS 563

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP  ++I    + I  K+K  GY PD S         D ++  L+ HSE+LA+A  +L  
Sbjct: 564 HPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQD-RELKLQYHSEKLALAFAVLKT 622

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PG+ IR+ KN+R+C DCH   K  SR+   EIIVRD  RFHHF  G CSC DYW
Sbjct: 623 PPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 152/294 (51%), Gaps = 8/294 (2%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +I  G++ P++  +   L  C YL    QG+  HAHI       D+ + N +++ YA CG
Sbjct: 95  LINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG 154

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            L+ A  +FD M  + +VSW V+I  + Q G+   AL LF +M  + F+P+ +T  S+  
Sbjct: 155 SLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLK 214

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           A     +   G   HA+ L+   +    +V V +SL+DMY +   +  A+ +F S+  ++
Sbjct: 215 ASGTGPSDHHGRQLHAFSLK---YGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SWN++I G A  G  E  ++ F ++ + + F P   T+  VL AC   G + +G+ + 
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFXQM-LRQGFEPTHFTYSSVL-ACASSGSLEQGK-WV 328

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              + +    P+      L+D+ A++G+I +A  +   + +K D V W S++  
Sbjct: 329 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISG 381


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/617 (36%), Positives = 325/617 (52%), Gaps = 48/617 (7%)

Query: 35  SLLSSLTECKSMSQL--KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           SL S L      S L  K++HAQ ++  L Q     +  + +  +     +  A ++F  
Sbjct: 6   SLQSQLCSAARQSPLLAKKLHAQIIKAGLNQHEP--IPNTLLNAYGKCGLIQDALQLFDA 63

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL--FA 150
           +   +   W +L+ AC  ++  +P   +   R +      PD   F   +KACA L    
Sbjct: 64  LPRRDPVAWASLLTAC--NLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLH 121

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
             QGKQ HA  F      D  + +SLI  YA  G  D    VFD++   + +SW  MI  
Sbjct: 122 VKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISG 181

Query: 211 FVQFGEFDSALKLFR---------------------------------RMQILFEPDGYT 237
           + + G    A +LFR                                 R + +   D   
Sbjct: 182 YARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLV 241

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             S+  ACA LA   LG   H  ++     S +    ++N+LIDMY KC  L  A+ +F 
Sbjct: 242 LSSVVGACANLALWELGKQMHGVVITLGYESCL---FISNALIDMYAKCSDLVAAKYIFC 298

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            M ++D+ SW SII+G A HG+AE AL  +D +V+     PN +TFVG++ AC+H G+VS
Sbjct: 299 EMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLA-GVKPNEVTFVGLIHACSHAGLVS 357

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +GR  F  M+ ++ I+P L+HY CL+DL +R+G++DEA +L+  MP+ PD   W +LL +
Sbjct: 358 KGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSS 417

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
           C K+H +  ++  +A  ++  +    S  Y+LLS +YA A  W DV  VRKLM      K
Sbjct: 418 C-KRHGNTQMAVRIADHLLNLKPEDPSS-YILLSNIYAGAGMWEDVSKVRKLMMTLEAKK 475

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PG S I++   +H F+AG+TSHP   +I G +  +DE+++ RGY PD S + + D    
Sbjct: 476 APGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTS-SVLHDMDQQ 534

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K+  L  HSERLA+A G+L   PG  IR+ KNLRVC DCH V KLIS I N EI VRD 
Sbjct: 535 EKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDA 594

Query: 598 ARFHHFKDGSCSCMDYW 614
            R+HHFKDG+CSC D+W
Sbjct: 595 KRYHHFKDGNCSCNDFW 611


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 335/575 (58%), Gaps = 16/575 (2%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTW 101
           C  +   K+IH   L+         + + + ++H ++ F  +  A ++F  +   +  +W
Sbjct: 7   CGDLLDGKKIHCLVLKLGFEWD---VFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSW 63

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N +I    ++ +A  +A+ +   M  +G V  D  T    L  CA +     GK  H ++
Sbjct: 64  NAMISGYCQNGNA-AEALDIADEMRLEG-VKMDAITVASVLPVCAQVGDILSGKLIHLYV 121

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K GL  +++++N+LI+ YA  G L  A KVF  +L + +VSWN +I  + Q G    A+
Sbjct: 122 IKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAI 180

Query: 222 KLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           +++  M+   E  P+  T+ SI  A + +  L  GM  H  ++++C   L +DV V   L
Sbjct: 181 EVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC---LYSDVFVGTCL 237

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           IDMY KCG LD A  +F  +P+++   WN++I  + +HG  E AL+ F R +  E   P+
Sbjct: 238 IDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELF-REMKAERVKPD 296

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            ITFV +LSAC+H G+VS+ +  F++M  EY I P L+HYGC+VDL  RAG ++ A + +
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MP++PDA  W +LL+AC + H ++ L +  ++++ E +     G YVLLS +YA+  +
Sbjct: 357 KKMPIQPDASAWGALLNAC-RIHGNIELGKHASERLFEVDSENV-GYYVLLSNIYANVGK 414

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W  V  VR L  D+G+ K PG SSI ++     F+ G+ +HP+ ++IY  L  +  K+K+
Sbjct: 415 WEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKT 474

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GY PD+    + D  +D K+  L  HSERLAIA GI++  P  PIR+FKNLRVC DCH 
Sbjct: 475 IGYVPDFC-FVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHT 533

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VTK IS I   EIIVRD +RFHHFK G+CSC DYW
Sbjct: 534 VTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 336/612 (54%), Gaps = 52/612 (8%)

Query: 41  TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-DYAFRVFYQIENPNSF 99
           + C +++  KQ+HA   R  L Q    +    R I       +  Y   +F Q+ +PN F
Sbjct: 19  SHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPF 78

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF----SQGK 155
            ++ LIRA AR+      +I L+  M+   NV P   TF       + LF+     S G 
Sbjct: 79  LYSALIRAYARN-GPFHHSIRLYTSMLNN-NVSPVSFTF-------SALFSLLKNPSLGS 129

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H H F  G V+D+Y+ N++IH Y   G LD A KVFD M  R +V+W  +I A+ + G
Sbjct: 130 QLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSG 189

Query: 216 EFDSA-------------------------------LKLFRRM-QILFEPDGYTFQSITS 243
           + DSA                               L+ FR+M +     D  T     S
Sbjct: 190 DMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAIS 249

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L       W    I         ++V V ++LIDMY KCG+++ A  VF+ M + +
Sbjct: 250 ACAQLGVSGYADWIRE-IAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMN 308

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + S++S+I+GFA+HGRA +A+K F  ++ E    PN +TFVG+ +AC+H GMV +G+  F
Sbjct: 309 VFSYSSMIVGFAVHGRARSAIKLFYEML-ENGIKPNHVTFVGLFTACSHAGMVEQGQQLF 367

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M   Y ++P  +HY C+ DLL RAG++++AL LV  MPM+P+  +W +LL A    H 
Sbjct: 368 GAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGA-SHIHG 426

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           +  ++E  ++ + E E     G Y+LLS+ YA A +W+DV  VRKLM +K + K PGCS 
Sbjct: 427 NPDVAEIASRSLFELEPDNL-GNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSW 485

Query: 484 IEI-DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
           +E  +GI HEFFAGD  HP+  +I   LD + ++LK  GY P  +     D  D+GK+  
Sbjct: 486 VEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPY-DIDDEGKRCL 544

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           L  HSE+LA+A G+L+   G  I++ KNLR+C+DCH V    S++   +IIVRD  RFHH
Sbjct: 545 LVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHH 604

Query: 603 FKDGSCSCMDYW 614
           F +G+CSC ++W
Sbjct: 605 FLNGACSCNNFW 616


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 343/606 (56%), Gaps = 26/606 (4%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR 73
           Q HS  I +   ++   +NH  LL+  ++C  +       A  L   +P+++   ++   
Sbjct: 73  QLHSLIITSGCSSDKFISNH--LLNLYSKCGQLDT-----AITLFGVMPRKN---IMSCN 122

Query: 74  IIHFASFADLDY--AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           I+    F   D+  A ++F ++   N  TWN ++    +  +   + + LF RM E G  
Sbjct: 123 ILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQ-FEFNEEGLGLFSRMNELG-F 180

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           LPD+      L+ CA L A   G+Q H ++ K G   ++ + +SL H Y  CG L    +
Sbjct: 181 LPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGER 240

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           +   M  +++V+WN +I    Q G  +  L  +  M++  F PD  TF S+ S+C+ LAT
Sbjct: 241 LIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELAT 300

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA +++    SL+  V+  +SLI MY +CG L+ + +VF      D+  W+S+
Sbjct: 301 LGQGQQIHAEVIK-AGASLIVSVI--SSLISMYSRCGCLEYSLKVFLECENGDVVCWSSM 357

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I  +  HGR   A+  F+++  +E    N +TF+ +L AC+H G+  +G  +FD+M+ +Y
Sbjct: 358 IAAYGFHGRGVEAIDLFNQME-QEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKY 416

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            + P LEHY C+VDLL R G+++EA  L+ +MP+K D + W++LL AC K H    ++  
Sbjct: 417 GVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSAC-KIHKKTEMARR 475

Query: 431 VAKQV--IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           ++++V  ++    +    YVLLS ++AS +RW+DV  VRK M D+ + KEPG S +E+  
Sbjct: 476 ISEEVFRLDPRDPV---PYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKN 532

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             H+F  GD SHP++ +I  +L  +  ++K RGY PD        +++D K+ SL  HSE
Sbjct: 533 QIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVED-KEYSLVHHSE 591

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA  +L    G PIRV KNLRVC DCH   K IS I N EIIVRD +RFHHFK+G C
Sbjct: 592 KLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRC 651

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 652 SCGDYW 657



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 38/312 (12%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---------- 187
           F   L++C    + S GKQ H+ I   G  SD +I+N L++ Y+ CG LD          
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 188 ---------------------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
                                 A K+FD M ER++ +WN M+   +QF   +  L LF R
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M  L F PD +   S+   CAGL  L  G   H Y+ R C      +++V +SL  MY K
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYV-RKCGFEF--NLVVVSSLAHMYMK 231

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGSL    ++  +MP +++ +WN++I G A +G  E  L  ++ + +   F P+ ITFV 
Sbjct: 232 CGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKM-AGFRPDKITFVS 290

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           V+S+C+    + +G+     +I +   + ++     L+ + +R G ++ +L +       
Sbjct: 291 VISSCSELATLGQGQQIHAEVI-KAGASLIVSVISSLISMYSRCGCLEYSLKVFLECE-N 348

Query: 406 PDAVIWRSLLDA 417
            D V W S++ A
Sbjct: 349 GDVVCWSSMIAA 360


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 332/606 (54%), Gaps = 33/606 (5%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G + +H +L ++L  C +   +   KQ+H  A++     +  T +  S    +A    LD
Sbjct: 134 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYG--AESITSMGNSLCSLYAKLGSLD 191

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A R F++I   N  TW T+I ACA   +     + LF  M+  G V+P++ T    +  
Sbjct: 192 SALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDG-VMPNEFTLTSVMSL 250

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C      + GKQ  A  FK G  +++ + NS ++ Y   G  D A ++F+ M + S+++W
Sbjct: 251 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 310

Query: 205 NVMIDAFVQFGEFDSA-------------LKLFRRMQ-ILFEPDGYTFQSITSACAGLAT 250
           N MI  + Q    DSA             L +FR ++  + +PD +TF SI S C+ +  
Sbjct: 311 NAMISGYAQI--MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMA 368

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA  ++      ++DV+VN++L++MY KCG +  A + F  MP R   +W S+
Sbjct: 369 LEQGEQIHAQTIKS---GFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSM 425

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G++ HG+ + A++ F+ + +     PN ITFV +LSAC++ G+V E   YFD+M  EY
Sbjct: 426 ISGYSQHGQPQEAIQLFEEMRLA-GVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEY 484

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I PV++HYGC++D+  R G +++A   +     +P+  IW SL+ A C+ H ++ L+  
Sbjct: 485 CIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLV-AGCRSHGNMELAFY 543

Query: 431 VAKQVIE-SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
            A +++E    GI    Y+LL  +Y S  RW DV  VRKLM  + V      S I I   
Sbjct: 544 AADKLLELKPKGI--ETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDK 601

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS--SLRLHS 547
            + F A D +HPQ  ++Y  L+ + EK K+ GY P Y  A + D  DD K +  SL+ HS
Sbjct: 602 VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEP-YQNAELSDSEDDEKPAAGSLKHHS 660

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLA+ALG+L   PG  +RV KN+ +C+DCH   KL S + N EIIVRD  R H FKDG 
Sbjct: 661 ERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGR 720

Query: 608 CSCMDY 613
           CSC D+
Sbjct: 721 CSCGDF 726



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG 247
           A ++FD M ER++V+W  ++  +    +    L++F  M ++   P  YT  +  +AC  
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
              + LG   H Y +++   S+ +   + NSL  +Y K GSLD A + F  +P++++ +W
Sbjct: 152 SCDVDLGKQVHGYAIKYGAESITS---MGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 208

Query: 308 NSIILGFALHGR-AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY--FD 364
            ++I   A      E  +  F  +++ +   PN  T   V+S C  R  ++ G+    F 
Sbjct: 209 TTMISACAEDEECVELGMSLFIDMLM-DGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFS 267

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             I      PV       + L  R G  DEA+ L   M      + W +++
Sbjct: 268 FKIGCETNLPV---KNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMI 314



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           AR++F+ MP+R++ +W +++ G+ L+ +    L+ F  + +E    P+  T    L+AC 
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEM-LEMGRYPSHYTLGATLNACL 150

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
               V  G+      I +Y    +      L  L A+ G++D AL     +P K + + W
Sbjct: 151 ASCDVDLGKQVHGYAI-KYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITW 208

Query: 412 RSLLDACCKKHASVVL 427
            +++ AC +    V L
Sbjct: 209 TTMISACAEDEECVEL 224


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 332/606 (54%), Gaps = 33/606 (5%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G + +H +L ++L  C +   +   KQ+H  A++     +  T +  S    +A    LD
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYG--AESITSMGNSLCSLYAKLGSLD 231

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A R F++I   N  TW T+I ACA   +     + LF  M+  G V+P++ T    +  
Sbjct: 232 SALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDG-VMPNEFTLTSVMSL 290

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C      + GKQ  A  FK G  +++ + NS ++ Y   G  D A ++F+ M + S+++W
Sbjct: 291 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 350

Query: 205 NVMIDAFVQFGEFDSA-------------LKLFRRMQ-ILFEPDGYTFQSITSACAGLAT 250
           N MI  + Q    DSA             L +FR ++  + +PD +TF SI S C+ +  
Sbjct: 351 NAMISGYAQI--MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMA 408

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA  ++      ++DV+VN++L++MY KCG +  A + F  MP R   +W S+
Sbjct: 409 LEQGEQIHAQTIKS---GFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSM 465

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G++ HG+ + A++ F+ + +     PN ITFV +LSAC++ G+V E   YFD+M  EY
Sbjct: 466 ISGYSQHGQPQEAIQLFEEMRLA-GVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEY 524

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I PV++HYGC++D+  R G +++A   +     +P+  IW SL+ A C+ H ++ L+  
Sbjct: 525 CIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLV-AGCRSHGNMELAFY 583

Query: 431 VAKQVIE-SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
            A +++E    GI    Y+LL  +Y S  RW DV  VRKLM  + V      S I I   
Sbjct: 584 AADKLLELKPKGI--ETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDK 641

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS--SLRLHS 547
            + F A D +HPQ  ++Y  L+ + EK K+ GY P Y  A + D  DD K +  SL+ HS
Sbjct: 642 VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEP-YQNAELSDSEDDEKPAAGSLKHHS 700

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLA+ALG+L   PG  +RV KN+ +C+DCH   KL S + N EIIVRD  R H FKDG 
Sbjct: 701 ERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGR 760

Query: 608 CSCMDY 613
           CSC D+
Sbjct: 761 CSCGDF 766



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 13/305 (4%)

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
           +P  +     M+ +G  +      P  L  C    +    +  H H+ K G  +D+++  
Sbjct: 59  RPLDVQEAMTMLTEGKAVQSAMYVPL-LHRCVETGSLGAARAVHGHMAKTGASADMFVAT 117

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEP 233
           SL++ Y  C     A ++FD M ER++V+W  ++  +    +    L++F  M ++   P
Sbjct: 118 SLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP 177

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
             YT  +  +AC     + LG   H Y +++   S+ +   + NSL  +Y K GSLD A 
Sbjct: 178 SHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITS---MGNSLCSLYAKLGSLDSAL 234

Query: 294 QVFESMPKRDLTSWNSIILGFALHGR-AEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
           + F  +P++++ +W ++I   A      E  +  F  +++ +   PN  T   V+S C  
Sbjct: 235 RAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLM-DGVMPNEFTLTSVMSLCGT 293

Query: 353 RGMVSEGRDY--FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           R  ++ G+    F   I      PV       + L  R G  DEA+ L   M      + 
Sbjct: 294 RLDLNLGKQVQAFSFKIGCETNLPV---KNSTMYLYLRKGETDEAMRLFEQME-DASIIT 349

Query: 411 WRSLL 415
           W +++
Sbjct: 350 WNAMI 354


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/626 (34%), Positives = 349/626 (55%), Gaps = 55/626 (8%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLL S     S+S  K++HA  L + L        + + + H +AS      A  +FYQI
Sbjct: 20  SLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQI 79

Query: 94  --ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP-FALKACAYLFA 150
              + +   W TL+ +  +      +    F+ M ++G VL D      F L  C  +  
Sbjct: 80  PRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVL--CTRVED 137

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G+QA   + K GL   V + N++++ Y  CG ++   +VF  M ER++VSW+ +++ 
Sbjct: 138 LGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEG 197

Query: 211 FVQFGEFDSALKLFRRM--------QIL--------FEPDGY-----------------T 237
            V++   ++   +F  M         I+        F  +G+                 T
Sbjct: 198 VVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVT 257

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             SI SACA    + +G W H Y L+     +   ++V  +L+DMY KCG +D+A +VF+
Sbjct: 258 LSSILSACAQSGDVLMGRWVHVYALKGMGREM--HIMVGTALVDMYAKCGPIDMAFKVFK 315

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            +PKR++ +WN+++ G A+HGR +  L  F +++  E   P+ +TF+ VLSAC+H G+V 
Sbjct: 316 YLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMI--EEAKPDDLTFMAVLSACSHSGLVD 373

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +G  YF  + +EY  TP +EHY C+VD+L RAG+++EA+ L+  MPM P+ V+  SLL +
Sbjct: 374 QGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGS 433

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
           C   H  + L E + +++I+ +G   +  +VLLS +Y    + +    +R+++  KG+ K
Sbjct: 434 C-NAHGKLQLGERILQELIQMDGH-NTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRK 491

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS---------Q 528
            PG SSI + G  H+F AGD SHP TK+IY  L+ + ++L+  GY P+ +         +
Sbjct: 492 VPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGR 551

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
               +E+++ K+ +L LHSE+LA+  G ++ KPG P+ +FKNLR+C+DCH   K++S+I+
Sbjct: 552 EGSSEEMEE-KEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIY 610

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
           N EI++RDR RFH FK GSCSC DYW
Sbjct: 611 NREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 48/326 (14%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS---DVYINNSLIHFYASCGHLDL 188
           LP +  F   L++CA   + S GK+ HA I   GL S   + ++ N+L H YASCG    
Sbjct: 14  LPAR--FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSS 71

Query: 189 ANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSA----LKLFRRMQILFEPDGYTFQSIT 242
           A  +F  +    + +  W  ++ + VQ G   S      K  R+  ++   D     S+ 
Sbjct: 72  ARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVL--DDVAMISVF 129

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG--------------- 287
             C  +  L +G  A   +++     L   V V N++++MY KCG               
Sbjct: 130 VLCTRVEDLGMGRQAQGCLVKM---GLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNER 186

Query: 288 ----------------SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
                            ++  R VF+ MP+R+   W  +I G+  +G +       D +V
Sbjct: 187 NVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMV 246

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
           +      N +T   +LSAC   G V  GR      +        +     LVD+ A+ G 
Sbjct: 247 LRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGP 306

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDA 417
           ID A  +   +P K + V W ++L  
Sbjct: 307 IDMAFKVFKYLP-KRNVVAWNAMLGG 331



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 119/292 (40%), Gaps = 43/292 (14%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           +F   SS+LS+  +   +   + +H  AL+    + H  ++  + +  +A    +D AF+
Sbjct: 254 NFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMH-IMVGTALVDMYAKCGPIDMAFK 312

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  +   N   WN ++   A     K   + +F +MIE+    PD  TF   L AC++ 
Sbjct: 313 VFKYLPKRNVVAWNAMLGGLAMHGRGK-FVLDIFPKMIEEAK--PDDLTFMAVLSACSHS 369

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               QG     H F R L S+ Y     I  YA                         M+
Sbjct: 370 GLVDQG----YHYF-RSLESE-YGTTPKIEHYA------------------------CMV 399

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           D   + G  + A+ L ++M +   P+     S+  +C     L LG      +++   H+
Sbjct: 400 DILGRAGHLEEAVMLIKKMPMC--PNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHN 457

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIA---RQVFESMPKRDLTSWNSIILGFALH 317
               VL++N    MY   G  D A   RQ+ +S   R +   +SI +G  +H
Sbjct: 458 TEYHVLLSN----MYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIH 505


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 332/606 (54%), Gaps = 33/606 (5%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G + +H +L ++L  C +   +   KQ+H  A++     +  T +  S    +A    LD
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYG--AESITSMGNSLCSLYAKLGSLD 231

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A R F++I   N  TW T+I ACA   +     + LF  M+  G V+P++ T    +  
Sbjct: 232 SALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDG-VMPNEFTLTSVMSL 290

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C      + GKQ  A  FK G  +++ + NS ++ Y   G  D A ++F+ M + S+++W
Sbjct: 291 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 350

Query: 205 NVMIDAFVQFGEFDSA-------------LKLFRRMQ-ILFEPDGYTFQSITSACAGLAT 250
           N MI  + Q    DSA             L +FR ++  + +PD +TF SI S C+ +  
Sbjct: 351 NAMISGYAQI--MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMA 408

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA  ++      ++DV+VN++L++MY KCG +  A + F  MP R   +W S+
Sbjct: 409 LEQGEQIHAQTIKS---GFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSM 465

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G++ HG+ + A++ F+ + +     PN ITFV +LSAC++ G+V E   YFD+M  EY
Sbjct: 466 ISGYSQHGQPQEAIQLFEEMRLA-GVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEY 524

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I PV++HYGC++D+  R G +++A   +     +P+  IW SL+ A C+ H ++ L+  
Sbjct: 525 CIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLV-AGCRSHGNMELAFY 583

Query: 431 VAKQVIE-SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
            A +++E    GI    Y+LL  +Y S  RW DV  VRKLM  + V      S I I   
Sbjct: 584 AADKLLELKPKGI--ETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDK 641

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS--SLRLHS 547
            + F A D +HPQ  ++Y  L+ + EK K+ GY P Y  A + D  DD K +  SL+ HS
Sbjct: 642 VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEP-YQNAELSDSEDDEKPAAGSLKHHS 700

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           ERLA+ALG+L   PG  +RV KN+ +C+DCH   KL S + N EIIVRD  R H FKDG 
Sbjct: 701 ERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGR 760

Query: 608 CSCMDY 613
           CSC D+
Sbjct: 761 CSCGDF 766



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 13/295 (4%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M+ +G  +      P  L  C  + +    +  H H+ K G  +D+++  SL++ Y  CG
Sbjct: 69  MLTEGKAVQSAMYVPL-LHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCG 127

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
               A ++FD M ER++V+W  ++  +    +    L++F  M ++   P  YT  +  +
Sbjct: 128 AARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLN 187

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           AC     + LG   H Y +++   S+ +   + NSL  +Y K GSLD A + F  +P+++
Sbjct: 188 ACLASCDVDLGKQVHGYAIKYGAESITS---MGNSLCSLYAKLGSLDSALRAFWRIPEKN 244

Query: 304 LTSWNSIILGFALHGR-AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           + +W ++I   A      E  L  F  +++ +   PN  T   V+S C  R  ++ G+  
Sbjct: 245 VITWTTMISACAEDEECVELGLSLFIDMLM-DGVMPNEFTLTSVMSLCGTRLDLNLGKQV 303

Query: 363 --FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             F   I      PV       + L  R G  DEA+ L   M      + W +++
Sbjct: 304 QAFSFKIGCETNLPV---KNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMI 354


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/591 (37%), Positives = 349/591 (59%), Gaps = 24/591 (4%)

Query: 32  NHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  +++  L  C  + ++K+   +H   +R A+  +    L  + +  +A   +L    +
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD-FLGPALMELYADTGNLRDCHK 359

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           VF  I+     +WNTLI    R  + +P+ A++LF +M  QG ++PD ++   +L AC  
Sbjct: 360 VFETIKEKTILSWNTLISIFTR--NGQPEEALLLFVQMQTQG-LMPDSYSLASSLSACGT 416

Query: 148 LFAFSQ-GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
           + +FSQ G Q H +I K G  +D ++ N+LI  YA CG +  ANK+F+ + E+SLV+WN 
Sbjct: 417 I-SFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNS 474

Query: 207 MIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  F Q G    A+ LF +M +   + D  TF S+  AC+ L  L  G W H  ++ + 
Sbjct: 475 MICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMY- 533

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              L  D  ++ +L DMY KCG L +A  VF+ M +R + SW+ +I G+ +HG+  A + 
Sbjct: 534 --GLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATIS 591

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F++++      PN ITF+ +LSAC+H G V EG+ YF+ M +E+ + P  +H+ C+VDL
Sbjct: 592 LFNQML-GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDL 649

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L+RAG+++ A  +++++P   ++ IW +LL+ C + H  + + + + K +++ +    +G
Sbjct: 650 LSRAGDLNGAYQIITSLPFPANSSIWGALLNGC-RIHKRIDIIKSIEKNLLDVDTAD-TG 707

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            Y LLS +YA    W+  G VR +M  KG+ K PG S+IEID   + F  GDTSH QTK 
Sbjct: 708 YYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKD 767

Query: 506 IYGFLDLIDEKLKSRGY--TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           IY FL+     + ++ Y   PD S   +V      K++++  HSE+LAIA GI+N +PG 
Sbjct: 768 IYRFLENFRSLVHAQVYDSEPDNS---IVGTSKFNKENNVVSHSEKLAIAFGIINTRPGT 824

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +R+ KNLRVC+DCH   K+ S+I   EII+RD  RFH F++GSCSC DYW
Sbjct: 825 TLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 180/379 (47%), Gaps = 19/379 (5%)

Query: 43  CKSMSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS 98
           C + + L Q+HA    T L    P   K +  Y++I  F S      + RVF     P+S
Sbjct: 11  CATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFES------SKRVFDTFPKPDS 64

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
           F W  LI+ C        +A+ L+  M+ Q         FP  LKAC+     S G + H
Sbjct: 65  FMWGVLIK-CYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVH 123

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
             + K G  SD  +  SL+  Y     LD A K FD M  R +V+W+ ++  FVQ G+  
Sbjct: 124 GRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQAS 183

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
             L +F +M     EPD  T  S+T AC+ L +L LG   H Y++R     + ++  +NN
Sbjct: 184 EGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVR---REIESNASLNN 240

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           SLI MY K G L  A ++FE++P R    W  +I  +   G  + AL  F ++  E    
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKM-QEFKME 299

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDLLARAGNIDEAL 396
           PN +T VGVL AC   G V EGR     +I    + P L+  G  L++L A  GN+ +  
Sbjct: 300 PNQVTMVGVLCACARLGRVKEGRSVHGFVIRR-AMDPELDFLGPALMELYADTGNLRDC- 357

Query: 397 HLVSNMPMKPDAVIWRSLL 415
           H V     +   + W +L+
Sbjct: 358 HKVFETIKEKTILSWNTLI 376


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/628 (38%), Positives = 344/628 (54%), Gaps = 56/628 (8%)

Query: 35  SLLSSLTECKSM---SQLKQIHAQALRTALPQQ----HKTLLIYSR-------------- 73
           SL++ L  C S+   S+ KQ+H  ALR+ L +     +  + +Y++              
Sbjct: 252 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311

Query: 74  -----------IIHFASFADLDYAFRVFYQIENP----NSFTWNTLIRACARSVDAKPQA 118
                      +  ++     D A  +F +I       N  TW+ +I   A+      +A
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQR-GLGFEA 370

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-------VSDVY 171
           + +F++M+  G+  P+  T    L  CA       GK+ H H  K  L         D+ 
Sbjct: 371 LDVFRQMLLCGSE-PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLM 429

Query: 172 INNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-- 227
           + N+LI  Y+ C     A  +FD +   +RS+V+W V+I    Q GE + AL+LF +M  
Sbjct: 430 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 489

Query: 228 -QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                 P+ +T      ACA L  L  G   HAY+LR+   S +  + V N LIDMY K 
Sbjct: 490 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM--LFVANCLIDMYSKS 547

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G +D AR VF++M +R+  SW S++ G+ +HGR E AL+ F  +  +    P+ +TFV V
Sbjct: 548 GDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQ-KVXLVPDGVTFVVV 606

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           L AC+H GMV +G +YF+ M  ++ + P  EHY C+VDLL+RAG +DEA+ L+  MPMKP
Sbjct: 607 LYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKP 666

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
              +W +LL AC + +A+V L E  A Q++E E G   G Y LLS +YA+AR W DV  +
Sbjct: 667 TPAVWVALLSAC-RVYANVELGEYAANQLLELESG-NDGSYTLLSNIYANARCWKDVARI 724

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R LM + G+ K PGCS ++       FFAGD SHP ++QIY  L  + +++K+ GY PD 
Sbjct: 725 RYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD- 783

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           ++ A+ D  D+ K   L  HSE+LA+A GIL   PG PIR+ KNLR C DCH     IS 
Sbjct: 784 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISI 843

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I   EIIVRD +RFHHFK+GSCSC  YW
Sbjct: 844 IIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 190/369 (51%), Gaps = 34/369 (9%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS--- 98
           +CKS++  +  H Q L   LP  H    I S  + F S A    A  V  ++ +P+S   
Sbjct: 57  QCKSLASAELTHQQLLVQGLP--HDPTHIISMYLTFNSPAK---ALSVLRRL-HPSSHTV 110

Query: 99  FTWNTLIRACARSVDAK--PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           F WN LIR   RSV        + L++RM   G   PD +TFPF LKAC  + +F  G  
Sbjct: 111 FWWNQLIR---RSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGAS 166

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSWNVMIDAFVQ 213
            HA +F  G   +V++ N L+  Y  CG  + A +VFD M ER    LVSWN ++ A++Q
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 226

Query: 214 FGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            G+   A+K+F RM   +   PD  +  ++  ACA +   S G   H Y LR     L  
Sbjct: 227 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALR---SGLFE 283

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V N+++DMY KCG ++ A +VFE M  +D+ SWN+++ G++  GR + AL  F++ +
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEK-I 342

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI---NEYNITPVLEHYGCLVDLLAR 388
            EE    N +T+  V++    RG+  E  D F  M+   +E N+         LV LL+ 
Sbjct: 343 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVV-------TLVSLLSG 395

Query: 389 AGNIDEALH 397
             +    LH
Sbjct: 396 CASAGTLLH 404



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 183/359 (50%), Gaps = 45/359 (12%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WN+++ A  +  D+  +A+ +F+RM E   + PD  +    L ACA + A+S+GKQ H 
Sbjct: 216 SWNSIVAAYMQGGDSI-RAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 274

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           +  + GL  DV++ N+++  YA CG ++ ANKVF+ M  + +VSWN M+  + Q G FD 
Sbjct: 275 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 334

Query: 220 ALKLFRRM---------------------------------QILF---EPDGYTFQSITS 243
           AL LF ++                                 Q+L    EP+  T  S+ S
Sbjct: 335 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLS 394

Query: 244 ACAGLATLSLGMWAHA----YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
            CA   TL  G   H     +IL   ++    D++V N+LIDMY KC S   AR +F+ +
Sbjct: 395 GCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLI 454

Query: 300 PKRD--LTSWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFVGVLSACNHRGMV 356
           P +D  + +W  +I G A HG A  AL+ F +++  ++F  PN+ T    L AC   G +
Sbjct: 455 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGAL 514

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             GR     ++     + +L    CL+D+ +++G++D A  +  NM  + + V W SL+
Sbjct: 515 RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLM 572



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN +I   V  G  +  L+L+RRMQ L + PD YTF  +  AC  + +   G   HA + 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGR 319
                    +V V N L+ MY +CG+ + ARQVF+ M +R   DL SWNSI+  +   G 
Sbjct: 173 AS---GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           +  A+K F+R+  +    P++++ V VL AC   G  S G+      +       V    
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG- 288

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +VD+ A+ G ++EA  +   M +K D V W +++
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMV 323


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 347/630 (55%), Gaps = 60/630 (9%)

Query: 35  SLLSSLTECKSM---SQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           SL++ L  C S+   S+ KQ+H  ALR+ L    + + + + ++  +A    ++ A +VF
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGL---FEDVFVGNAVVDMYAKCGMMEEANKVF 289

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG---NVL--------------- 132
            +++  +  +WN ++   ++ +     A+ LF+++ E+    NV+               
Sbjct: 290 ERMKVKDVVSWNAMVTGYSQ-IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLG 348

Query: 133 ----------------PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-------VSD 169
                           P+  T    L  CA       GK+ H H  K  L         D
Sbjct: 349 FEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDD 408

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           + + N+LI  Y+ C     A  +FD +   +RS+V+W V+I    Q GE + AL+LF +M
Sbjct: 409 LMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 468

Query: 228 ---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
                   P+ +T      ACA L  L  G   HAY+LR+   S +  + V N LIDMY 
Sbjct: 469 LQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM--LFVANCLIDMYS 526

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K G +D AR VF++M +R+  SW S++ G+ +HGR E AL+ F  +  +    P+ +TFV
Sbjct: 527 KSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQ-KVGLVPDGVTFV 585

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            VL AC+H GMV +G +YF+ M  ++ + P  EHY C+VDLL+RAG +DEA+ L+  MPM
Sbjct: 586 VVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPM 645

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           KP   +W +LL AC + +A+V L E  A Q++E E G   G Y LLS +YA+AR W DV 
Sbjct: 646 KPTPAVWVALLSAC-RVYANVELGEYAANQLLELESG-NDGSYTLLSNIYANARCWKDVA 703

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            +R LM + G+ K PGCS ++       FFAGD SHP ++QIY  L  + +++K+ GY P
Sbjct: 704 RIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVP 763

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           D ++ A+ D  D+ K   L  HSE+LA+A GIL   PG PIR+ KNLR C DCH     I
Sbjct: 764 D-NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYI 822

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S I   EIIVRD +RFHHFK+GSCSC  YW
Sbjct: 823 SIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 178/335 (53%), Gaps = 24/335 (7%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS--- 98
           +CKS++  + IH Q L   LP  H    I S  + F S A    A  V  ++ +P+S   
Sbjct: 38  QCKSLASAELIHQQLLVQGLP--HDPTHIISMYLTFNSPAK---ALSVLRRL-HPSSHTV 91

Query: 99  FTWNTLIRACARSVDAK--PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           F WN LIR   RSV        + L++RM   G   PD +TFPF LKAC  + +F  G  
Sbjct: 92  FWWNQLIR---RSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGAS 147

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSWNVMIDAFVQ 213
            HA +F  G   +V++ N L+  Y  CG  + A +VFD M ER    LVSWN ++ A++Q
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207

Query: 214 FGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            G+   A+K+F RM   +   PD  +  ++  ACA +   S G   H Y LR     L  
Sbjct: 208 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALR---SGLFE 264

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V N+++DMY KCG ++ A +VFE M  +D+ SWN+++ G++  GR + AL  F++ +
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEK-I 323

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
            EE    N +T+  V++    RG+  E  D F  M
Sbjct: 324 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 183/359 (50%), Gaps = 45/359 (12%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WN+++ A  +  D+  +A+ +F+RM E   + PD  +    L ACA + A+S+GKQ H 
Sbjct: 197 SWNSIVAAYMQGGDSI-RAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 255

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           +  + GL  DV++ N+++  YA CG ++ ANKVF+ M  + +VSWN M+  + Q G FD 
Sbjct: 256 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 315

Query: 220 ALKL-----------------------------------FRRMQIL-FEPDGYTFQSITS 243
           AL L                                   FR+M++   EP+  T  S+ S
Sbjct: 316 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLS 375

Query: 244 ACAGLATLSLGMWAHA----YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
            CA   TL  G   H     +IL   ++    D++V N+LIDMY KC S   AR +F+ +
Sbjct: 376 GCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLI 435

Query: 300 PKRD--LTSWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFVGVLSACNHRGMV 356
           P +D  + +W  +I G A HG A  AL+ F +++  ++F  PN+ T    L AC   G +
Sbjct: 436 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGAL 495

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             GR     ++     + +L    CL+D+ +++G++D A  +  NM  + + V W SL+
Sbjct: 496 RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLM 553



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN +I   V  G  +  L+L+RRMQ L + PD YTF  +  AC  + +   G   HA + 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGR 319
                    +V V N L+ MY +CG+ + ARQVF+ M +R   DL SWNSI+  +   G 
Sbjct: 154 AS---GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           +  A+K F+R+  +    P++++ V VL AC   G  S G+      +       V    
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG- 269

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +VD+ A+ G ++EA  +   M +K D V W +++
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMV 304


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 343/605 (56%), Gaps = 24/605 (3%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSS--LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY 71
           Q H+H      +  GS   + S  LL    +C S+   +++  + +       H+ L  +
Sbjct: 140 QVHAHI-----KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMV-------HRDLCSW 187

Query: 72  SRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
           + +I  +    + + A  +F ++ N ++F+W  +I  C +  +   +A+ L++ M +   
Sbjct: 188 NIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQH-NRPEEALELYRLMQKHDY 246

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
              +K T   AL A A + +   GK+ H HI + GL SD  +  SL+  Y  CG ++ A 
Sbjct: 247 SKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEAR 306

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLA 249
            +FD M ER +VSW  MI  +++ G  +    LFR  M     P+ +TF  + +ACA LA
Sbjct: 307 YIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLA 366

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
              LG   HAY++R    S  +     ++L+ MY KCG ++ A+ VFE +P+ DL SW S
Sbjct: 367 AEDLGKQIHAYMVRVGFDSFSS---AASALVHMYSKCGDIENAKSVFEILPQPDLFSWTS 423

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +++G+A HG+ + AL +F+ L+++    P+ I F+GVLSAC H G+V +G +YF  +  +
Sbjct: 424 LLVGYAQHGQHDKALHFFE-LLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEK 482

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + +T  ++HY C++DLLARAG   EA  +++ MP+KPD  IW +LL  C + H ++ L++
Sbjct: 483 HGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGC-RIHGNLELAK 541

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             AK + E E       YV L+ +YASA    +   +R+ M  +G+ K+PG S IEI   
Sbjct: 542 RAAKSLFEIEPE-NPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRRE 600

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            H F  GD SHP++K+I  +L  + +++K  GY PD +      EL+  K+ +L  HSE+
Sbjct: 601 VHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQ-KEENLSYHSEK 659

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+A GI++   G PI+VFKNLR C DCH   K IS I   +IIVRD  RFH F+ GSCS
Sbjct: 660 LAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCS 719

Query: 610 CMDYW 614
           C DYW
Sbjct: 720 CKDYW 724



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 146/310 (47%), Gaps = 46/310 (14%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           LK C    A  +GKQ HAHI   G +  +YI+N L+  YA CG L  A KVFD M+ R L
Sbjct: 126 LKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDL 184

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACA--------------- 246
            SWN+MI  +V+ G F+ A  LF +M      D +++ +I S C                
Sbjct: 185 CSWNIMISGYVKGGNFEKARNLFDKMP---NRDNFSWTAIISGCVQHNRPEEALELYRLM 241

Query: 247 ---------------------GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                                 + +L +G   H +I+R     L +D +V  SL+DMY K
Sbjct: 242 QKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMR---MGLDSDEVVWCSLLDMYGK 298

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGS++ AR +F+ M +RD+ SW ++I  +  +GR E     F R ++  +  PN  TF G
Sbjct: 299 CGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF-RHLMNSNIMPNDFTFAG 357

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL+AC        G+     M+              LV + ++ G+I+ A  +   +P +
Sbjct: 358 VLNACADLAAEDLGKQIHAYMV-RVGFDSFSSAASALVHMYSKCGDIENAKSVFEILP-Q 415

Query: 406 PDAVIWRSLL 415
           PD   W SLL
Sbjct: 416 PDLFSWTSLL 425


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/572 (37%), Positives = 325/572 (56%), Gaps = 16/572 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +  LK++H  +L+      +  LL  + +  +A    L YA RVF+ I +    +WN LI
Sbjct: 395 LPSLKELHCYSLKQEFV--YDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALI 452

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A+S D  P+  +     ++   +LPD  T    L AC+ L +   GK+ H  I +  
Sbjct: 453 GGYAQSSD--PRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 510

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L  D+++  S++  Y  CG L     +FD M + SLVSWN +I   +Q G  + AL LFR
Sbjct: 511 LERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFR 570

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           +M +   +P G +  ++  AC+ L +L LG  AHAY L+H    L  +  +  S+IDMY 
Sbjct: 571 QMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHL---LEDNAFIACSIIDMYA 627

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K G++  + +VF  + ++   SWN++I+G+ +HGRA+ A+K F+ +      +P+ +TF+
Sbjct: 628 KNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQ-RTGRNPDDLTFL 686

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVL+ACNH G++ EG  Y D M + + + P L+HY C++D+L RAG +D AL + + M  
Sbjct: 687 GVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSE 746

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESEGGICSGVYVLLSRVYASARRWND 462
           +PD  IW SLL + C+ H ++ + E+VA +  V+E E       YVLLS +YA   +W+D
Sbjct: 747 EPDVGIWNSLL-SWCRIHQNLEMGEKVAAKLFVLEPEK---PENYVLLSNLYAGLGKWDD 802

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           V  VR+ M +  + K+ GCS IE++G    F  G+      ++I     +++ K+   GY
Sbjct: 803 VRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGY 862

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
            PD S     D  ++ K   LR HSE+LAI  G++    G  +RV+KNLR+C DCH   K
Sbjct: 863 RPDTSSVQH-DLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAK 921

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LIS++   EI+VRD  RFHHF  G CSC DYW
Sbjct: 922 LISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 145/281 (51%), Gaps = 17/281 (6%)

Query: 72  SRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
           +RII  +A     D +   F  + + N F WN +I + +R+ +   + + +F +MI + +
Sbjct: 124 TRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRN-ELYHEVLEMFIKMISKTH 182

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +LPD  TFP  +KACA +     G   H  + K GLV D+++ N+L+ FY + G +  A 
Sbjct: 183 LLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDAL 242

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           K+FD M ER+LVSWN MI  F   G+ D A          F PD  T  ++   CA    
Sbjct: 243 KLFDIMPERNLVSWNSMIRVFSDNGD-DGA----------FMPDVATVVTVLPVCARERE 291

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           + +G   H + ++    SL  +++VNN+L+DMY K G +  ++ +F+    +++ SWN++
Sbjct: 292 IGVGKGVHGWAVK---LSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTM 348

Query: 311 ILGFALHGRAEAALKYFDRLVV-EESFSPNSITFVGVLSAC 350
           + GF+  G          +++   E    + +T +  +  C
Sbjct: 349 VGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 151/323 (46%), Gaps = 20/323 (6%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLLS+ ++ KS+   K++H   +R  L    + L +Y  ++  +    +L     +F  +
Sbjct: 485 SLLSACSKLKSLRLGKEVHGFIIRNWL---ERDLFVYLSVLSLYIHCGELCTVQVLFDAM 541

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           E+ +  +WNT+I    ++     +A+ LF++M+  G + P   +      AC+ L +   
Sbjct: 542 EDNSLVSWNTVITGHLQN-GFPERALGLFRQMVLYG-IQPCGISMMTVFGACSLLPSLRL 599

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G++AHA+  K  L  + +I  S+I  YA  G +  ++KVF+ + E+S  SWN MI  +  
Sbjct: 600 GREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGM 659

Query: 214 FGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    A+KLF  MQ     PD  TF  + +AC     L  G       LR+ D    + 
Sbjct: 660 HGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEG-------LRYLDQMKSSF 712

Query: 273 VLVNN-----SLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAEAALKY 326
            L  N      +IDM  + G LD A +V   M +  D+  WNS++    +H   E   K 
Sbjct: 713 GLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKV 772

Query: 327 FDRLVVEESFSPNSITFVGVLSA 349
             +L V E   P +   +  L A
Sbjct: 773 AAKLFVLEPEKPENYVLLSNLYA 795



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 148/347 (42%), Gaps = 50/347 (14%)

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           RI +F    DLD +FRV  +                    D     + L  R        
Sbjct: 49  RISNFCETGDLDKSFRVVQEFAGD----------------DESSSDVFLLVR-------- 84

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG--LVSDVYINNSLIHFYASCGHLDLAN 190
                    L+A         G++ H H+      L SD  +   +I  YA CG  D + 
Sbjct: 85  ---EALGLLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSR 140

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGL 248
             FD +  ++L  WN +I ++ +   +   L++F +M  +    PD +TF  +  ACAG+
Sbjct: 141 SAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGI 200

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           + + +G+  H  +++     LV D+ V N+L+  Y   G +  A ++F+ MP+R+L SWN
Sbjct: 201 SDVGIGLAVHGLVVK---TGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWN 257

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+I  F+ +G              + +F P+  T V VL  C     +  G+      + 
Sbjct: 258 SMIRVFSDNGD-------------DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAV- 303

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + ++   L     L+D+ ++ G I ++  ++  +    + V W +++
Sbjct: 304 KLSLDKELVVNNALMDMYSKWGCIIDS-QMIFKLNNNKNVVSWNTMV 349


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 321/580 (55%), Gaps = 16/580 (2%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           +L+ C  +  L        R +       + + S +++ +A    +D A +VF ++   +
Sbjct: 109 ALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRD 168

Query: 98  SFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
             TW+T++     +   +P QAI ++ RM   G +  D+      ++ACA       G  
Sbjct: 169 RVTWSTMVTGFVNA--GQPVQAIEMYMRMRRDG-LEADEVVIVGVMQACAATGDARMGAS 225

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H ++ +  +  DV I+ SL+  YA  G  D A +VF+ M  R+ VSW+ +I    Q+G 
Sbjct: 226 VHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGN 285

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            D AL LFR MQ+    P+         AC+ L  L LG   H +ILR    +L  D +V
Sbjct: 286 ADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILR----TLELDRMV 341

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             ++IDMY KCGSL  A+ +F+ +  RDL SWN +I     HGR   AL  F  +   E 
Sbjct: 342 GTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNE- 400

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+  TF  +LSA +H G+V EG+ +F+ M+NEY I P  +H  C+VDLLAR+G ++EA
Sbjct: 401 VRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEA 460

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             LV+++  KP   I  +LL  C   +  + L E  A++++E + G   GV  L+S +YA
Sbjct: 461 NGLVASLHSKPTISILVALLSGCLNNN-KLELGESTAEKILELQPGDV-GVLALVSNLYA 518

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           +A+ W  V  VRKLM D G  K PGCSSIEI G  H F   D SHPQ +QI   +  +D 
Sbjct: 519 AAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDS 578

Query: 516 KLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
           +++  GY P      +  +L++G K+  L  HSERLA A G+LN  PG  + V KNLRVC
Sbjct: 579 EMRKMGYIPKTE--FVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVC 636

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH+  K +S+I + EI+VRD  RFHHFKDG+CSC DYW
Sbjct: 637 GDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 195/388 (50%), Gaps = 17/388 (4%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI-ENPNS 98
           L+ C ++  L ++HA  + ++    H  +L       +A   DL  A         +P+S
Sbjct: 10  LSSCAALRTLTRLHALLIVSSSASCHH-ILSSCLATAYARAGDLAAAESTLATAPTSPSS 68

Query: 99  F-TWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
              WN L+ A +R   A P +A+ +F+ +       PD  TF  AL ACA L   + G+ 
Sbjct: 69  IPAWNALLAAHSRG--ASPHEALRVFRALPPAAR--PDSTTFTLALSACARLGDLATGEV 124

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
                   G  +D+++ +S+++ YA CG +D A KVFD M +R  V+W+ M+  FV  G+
Sbjct: 125 VTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQ 184

Query: 217 FDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              A++++ RM+    E D      +  ACA      +G   H Y+LR   H++  DV++
Sbjct: 185 PVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLR---HAMQMDVVI 241

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           + SL+DMY K G  D AR+VFE MP R+  SW+++I   A +G A+ AL  F R++    
Sbjct: 242 STSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLF-RMMQVSG 300

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             PNS   VG L AC+  G++  G+     ++    +  ++     ++D+ ++ G++  A
Sbjct: 301 LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVGT--AVIDMYSKCGSLSSA 358

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             L   + +  D + W  ++ ACC  H 
Sbjct: 359 QMLFDKV-VSRDLISWNVMI-ACCGAHG 384


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 320/545 (58%), Gaps = 16/545 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    +DYA +VF +      + WN L RA   +   + + + L+ +M   G V  D+ 
Sbjct: 122 YSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE-EVLGLYWKMNRIG-VESDRF 179

Query: 137 TFPFALKACAYLFA----FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           T+ + LKAC          ++GK+ HAH+ +RG  S VYI  +L+  YA  G +D A+ V
Sbjct: 180 TYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYV 239

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLA 249
           F+ M  R++VSW+ MI  + + G+   AL+ FR M    +   P+  T  S+  ACA LA
Sbjct: 240 FNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLA 299

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G   H YILR    S++    V ++L+ MY +CG LD+ ++VF+ M  RD+ SWNS
Sbjct: 300 ALEQGRLIHGYILRRGLDSILP---VISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNS 356

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I  + +HG    A++ F+ ++   + SP  +TFV VL AC+H G+V EG+  F+ M  +
Sbjct: 357 LISSYGVHGYGRKAIQIFEEMLANGA-SPTPVTFVSVLGACSHEGLVEEGKRLFESMWRD 415

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + I P +EHY C+VDLL RA  +DEA  +V +M  +P   +W SLL +C + H +V L+E
Sbjct: 416 HGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSC-RIHGNVELAE 474

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             ++++   E    +G YVLL+ +YA A+ W++V  V+KL+  +G+ K PG   +E+   
Sbjct: 475 RASRRLFALEPK-NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRK 533

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            + F + D  +P  +QI+ FL  + E +K +GY P  ++  + +   + K+  +  HSE+
Sbjct: 534 MYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQ-TKGVLYELETEEKERIVLGHSEK 592

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+A G++N   G PIR+ KNLR+C+DCH  TK IS+    EI+VRD  RFH FK+G CS
Sbjct: 593 LALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCS 652

Query: 610 CMDYW 614
           C DYW
Sbjct: 653 CGDYW 657



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 166/358 (46%), Gaps = 37/358 (10%)

Query: 92  QIENPNSFTWNTLIRA------CARSVD---------AKPQAIVLFQRMIEQGNVL---- 132
           Q+  PN +T N L R+      C+ +++         AK     L Q + ++G +     
Sbjct: 8   QVIQPNYYTVNFLPRSPLKPPLCSVALNNLSISSGAGAKISNNQLIQSLCKEGKLKQALR 67

Query: 133 -------PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
                  P + T+   +  C +  + S G + H HI   G   D ++   LI  Y+  G 
Sbjct: 68  VLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGS 127

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
           +D A KVFD   +R++  WN +  A    G  +  L L+ +M +I  E D +T+  +  A
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA 187

Query: 245 CAGLAT----LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           C         L+ G   HA++ R   +S    V +  +L+DMY + G +D A  VF  MP
Sbjct: 188 CVASECTADHLTKGKEIHAHLTRRGYNS---HVYIMTTLVDMYARFGCVDYASYVFNGMP 244

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFVGVLSACNHRGMVSEG 359
            R++ SW+++I  +A +G+A  AL+ F  ++ E +  SPNS+T V VL AC     + +G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG 304

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           R     ++    +  +L     LV +  R G +D    +   M  + D V W SL+ +
Sbjct: 305 RLIHGYILRR-GLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDR-DVVSWNSLISS 360


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/609 (36%), Positives = 343/609 (56%), Gaps = 35/609 (5%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFAD-LDYAF 87
           F N++++L+     ++  + +++HA  ++T  LP    ++ + +R+I   +  D L  A 
Sbjct: 243 FENYNAILNECVNKRAFREGQRVHAHMIKTRYLP----SVFLRTRLIVLYTKCDSLGDAH 298

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF---------------QRMIEQGN-- 130
            VF ++   N  +W  +I A ++   A  QA+ LF               +  +   N  
Sbjct: 299 NVFDEMPERNVVSWTAMISAYSQRGYAS-QALNLFFADVKISLTGVYAIDKLKLSNPNRP 357

Query: 131 ---VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
                P++ TF   L +C     F  G+Q H+ I K      V++ +SL+  YA  G + 
Sbjct: 358 WVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIH 417

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY-TFQSITSACA 246
            A  VF+ + ER +VS   +I  + Q G  + AL+LFRR+Q       Y T+  + +A +
Sbjct: 418 EARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALS 477

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
           GLA L LG   H ++LR     + + V++ NSLIDMY KCG+L  +R++F++M +R + S
Sbjct: 478 GLAALDLGKQVHNHVLR---SEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVIS 534

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF-DV 365
           WN++++G++ HG     LK F  +  E    P+S+T + VLS C+H G+  +G + F D+
Sbjct: 535 WNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDM 594

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
              +  + P +EHYGC+VDLL R+G ++EA   +  MP +P A IW SLL A C+ H++V
Sbjct: 595 SSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGA-CRVHSNV 653

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            + E   +Q++E E G  +G YV+LS +YASA RW DV  +R LM  K VTKEPG SSIE
Sbjct: 654 DIGEFAGQQLLEIEPG-NAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIE 712

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           +D + H F A D SHP+ ++I   +  +    K  GY PD S   + D  ++ K+  L  
Sbjct: 713 LDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLS-CVLHDVDEEQKEKILLG 771

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LA++ G++     +PIRV KNLR+C DCH   K IS+++  E+ +RD+ RFH    
Sbjct: 772 HSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVG 831

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 832 GKCSCEDYW 840


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/598 (37%), Positives = 322/598 (53%), Gaps = 84/598 (14%)

Query: 89   VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
            +F +I   N   +N +IR+   +      A+++F+ M   G + PD +T+P  LKA +  
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNN-HLYSDALLVFKNMAGHG-IDPDHYTYPCVLKASSGS 1139

Query: 149  FAFSQGKQAHAHIFKRGLVSDVYIN-------------------------------NSLI 177
                 G Q HA + + GL  +V++                                NSL+
Sbjct: 1140 EDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLV 1199

Query: 178  HFYASCGHLD---------------------------LANKVFDN----------MLERS 200
               A  G  D                           + N   DN          +  +S
Sbjct: 1200 AGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKS 1259

Query: 201  LVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHA 259
            LVSWNVMI  ++       A+ +F +M+    +PD  +  S+  AC  L+ L LG   H 
Sbjct: 1260 LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHE 1319

Query: 260  YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
            Y++R     L  ++L+ N+LIDMY KCG L+ AR+VF+ M  RD+ SW S+I  + ++G+
Sbjct: 1320 YVVRK---RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGK 1376

Query: 320  AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
               A+  F R+  +   +P+SI FV VLSAC+H G++ EGR YF +M  E  I P +EH+
Sbjct: 1377 GRDAVSLFSRMQ-DLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHF 1435

Query: 380  GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
             C+VDLL RAG +DEA   +  MPM+P+  +W +LL AC + ++++++    A Q+ +  
Sbjct: 1436 VCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC-RVYSNMIIGLLAADQLFQ-- 1492

Query: 440  GGIC---SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
              +C   SG YVLLS +YA A RW DV  VR +M  KG+ K PG S+ E+D   H F AG
Sbjct: 1493 --LCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAG 1550

Query: 497  DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
            D SHPQ+KQIY  LD++  K+K  GY P+ + +A+ D  ++ K+  L +HSE+LAIA  I
Sbjct: 1551 DQSHPQSKQIYEELDVLVGKMKEAGYVPE-TDSALHDVEEEDKECHLAVHSEKLAIAFAI 1609

Query: 557  LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            LN  PG PIR+ KNLRVC DCH   KLIS+I   EI +RD  RFHHF +G CSC DYW
Sbjct: 1610 LNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 17/264 (6%)

Query: 39   SLTECKSMSQLK-QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPN 97
            +L  CK M  L  +  A  + + LP    T L            ++ +   +F ++ N +
Sbjct: 1211 ALEVCKEMELLGLKPDAGTMASLLPAVTNTCL-----------DNVSFVKEMFMKLANKS 1259

Query: 98   SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
              +WN +I A   +     +A+ +F +M E   V PD  +    L AC  L A   G++ 
Sbjct: 1260 LVSWNVMI-AVYMNNSMPAEAVDIFLQM-EDHAVDPDAISIASVLPACGDLSALLLGRRI 1317

Query: 158  HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
            H ++ ++ L  ++ + N+LI  YA CG L+ A +VFD M  R +VSW  MI A+   G+ 
Sbjct: 1318 HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKG 1377

Query: 218  DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
              A+ LF RMQ L   PD   F S+ SAC+    L  G +    +   C   +V  +   
Sbjct: 1378 RDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEEC--KIVPRIEHF 1435

Query: 277  NSLIDMYCKCGSLDIARQVFESMP 300
              ++D+  + G +D A    + MP
Sbjct: 1436 VCMVDLLGRAGQVDEAYGFIKQMP 1459



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 135/271 (49%), Gaps = 16/271 (5%)

Query: 155  KQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            K+ H+ I     L S+  +   L+  YA CG       +FD + ++++V +NVMI ++V 
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 214  FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
               +  AL +F+ M     +PD YT+  +  A +G   L +GM  HA ++R     L  +
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVR---VGLDLN 1160

Query: 273  VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            V V N LI MY KCG L  A +V + MP RD+ SWNS++ G A +G+ + AL+    + +
Sbjct: 1161 VFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMEL 1220

Query: 333  EESFSPNSITFVGVLSACNHRGM--VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                 P++ T   +L A  +  +  VS  ++ F  + N+  ++     +  ++ +     
Sbjct: 1221 -LGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYMNNS 1274

Query: 391  NIDEALHLVSNMP---MKPDAVIWRSLLDAC 418
               EA+ +   M    + PDA+   S+L AC
Sbjct: 1275 MPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 43/256 (16%)

Query: 35   SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            S+ S L  C  +S L   ++IH   +R  L  Q   LL  + I  +A    L+YA  VF 
Sbjct: 1297 SIASVLPACGDLSALLLGRRIHEYVVRKRL--QPNLLLENALIDMYAKCGCLEYAREVFD 1354

Query: 92   QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            Q++  +  +W ++I A   +   +  A+ LF RM + G + PD   F   L AC++    
Sbjct: 1355 QMKFRDVVSWTSMISAYGMNGKGR-DAVSLFSRMQDLG-LNPDSIAFVSVLSACSHAGLL 1412

Query: 152  SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             +G+    + FK  +  +  I   + HF                           M+D  
Sbjct: 1413 DEGR----YYFKL-MTEECKIVPRIEHFVC-------------------------MVDLL 1442

Query: 212  VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             + G+ D A    ++M +  EP+   + ++ SAC   + + +G+ A   + + C      
Sbjct: 1443 GRAGQVDEAYGFIKQMPM--EPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGY 1500

Query: 272  DVLVNNSLIDMYCKCG 287
             VL++N    +Y K G
Sbjct: 1501 YVLLSN----IYAKAG 1512


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 335/603 (55%), Gaps = 49/603 (8%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF--ADLDYAFRVFYQIENPNSFTWN 102
           ++S+LKQ H+Q +R  L  + + +    R++ F +   A + YA R+     +P+   +N
Sbjct: 13  TISELKQHHSQLVRLGLASRPEHV---RRLLAFLARDPAGVPYAARLLAHHPDPHPALFN 69

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK------- 155
            L  +        P     F  ++    + PD  T P  L A     A            
Sbjct: 70  PLFASL------PPHHAAAFLALMLSLPLHPDHFTLPRLLPAAPLPLAAQLHALLLKLNF 123

Query: 156 QAHAHIFKRGLVS-----------------------DVYINNSLIHFYASCGHLDLANKV 192
            +HAH F   L +                       DV    +++      G +D A K+
Sbjct: 124 HSHAHSFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKL 183

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           FD M ER+L+SWN MI  +V+ G F  AL++F +M+ L  E +G+   S   AC G   L
Sbjct: 184 FDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVL 243

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           + G   H ++ +     +  D  +  +++DMYCKCGS++ A  VF+ +P + LTSWN +I
Sbjct: 244 ARGREVHRWVEQS---GITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMI 300

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G A+HGR + A++ F  +   E  +P+ +T V VL+AC H GMVS+G +YF+ ++  Y 
Sbjct: 301 GGLAVHGRCKDAIELFHEME-REDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYG 359

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P +EHYGC+VDL  RAG +DEA  ++ +MPM+PD  +  +L  AC K H  + L E +
Sbjct: 360 IEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGAC-KIHRDLDLGEAI 418

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
             +VIE +    SG YVLL+ + ASA +W DV  VR+LM ++ V+KE G S IEIDG   
Sbjct: 419 GWRVIELDPQ-NSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVC 477

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
           EF  G   H Q K+I+  +  +  K++  GY PD S   + D  ++ K+  L+ HSE+LA
Sbjct: 478 EFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDV-LHDITEEEKEVPLQYHSEKLA 536

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           IA G+L  +PG  +R+ KNLRVC+DCHE TK ISR+F  EI+VRDR RFHHFKDG+CSC 
Sbjct: 537 IAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCR 596

Query: 612 DYW 614
           DYW
Sbjct: 597 DYW 599


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 334/577 (57%), Gaps = 20/577 (3%)

Query: 46  MSQLKQIHAQA-LRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           + Q ++IH  A +   LP     ++  + I  +     LD A   F +++  NS TWN +
Sbjct: 47  IDQGREIHRYARISGLLPN---VVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAM 103

Query: 105 IRACARSVDAKP-QAIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           +      +D +  +A+ LF+ M E+  +  PDK +F  A++AC+ L    QG++ H  + 
Sbjct: 104 M--TNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLR 161

Query: 163 KRG--LVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVMIDAFVQFGEFDS 219
           + G  L  DV +  +L++ Y+ CG L+ A KVFD++  +   V WN MI A+ Q G    
Sbjct: 162 REGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQ 221

Query: 220 ALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           AL L+R M    +  P   TF ++   CA L+ L  G   HA +      +   ++LV+N
Sbjct: 222 ALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT---NFDANLLVSN 278

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+ MY KCG LD A  VF SM  +D  SWN+II  +A HG ++ AL  +  + ++    
Sbjct: 279 ALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQ-GVK 337

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P  +TFVG+LSAC+H G+V++G DYF  M +++ I P + H+GC++DLL R G + EA  
Sbjct: 338 PTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAEL 397

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           ++ +MP++ +AV W SLL AC K H  +      A QV++      SG YVLLS +YA+A
Sbjct: 398 VLKSMPIQANAVQWMSLLGAC-KTHGDLKRGVRAADQVVDRVP-WTSGGYVLLSNIYAAA 455

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            RW DV  +RK+M  +GV K PG S IEI  + HEF +GD SHPQ ++IY  L  + E++
Sbjct: 456 GRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEM 515

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           K  GY PD S      E ++ +   +  HSE+LAI  G + +     +R+ KNLRVC DC
Sbjct: 516 KGLGYVPDTSSVFHDLEEEEKEDLLV-CHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDC 574

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H  TK +SRI   +I+VRD ARFH F++GSCSC DYW
Sbjct: 575 HTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 153/307 (49%), Gaps = 10/307 (3%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA--FSQGKQAHAHIFKRGLVSDVYINN 174
           +A+V F+RM + G   PD+ TF   L A A + A    QG++ H +    GL+ +V +  
Sbjct: 12  EALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGT 70

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---QILF 231
           ++I  Y  CG LD A   F+ +  ++ V+WN M+  +   G    AL+LFR M       
Sbjct: 71  AVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSA 130

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            PD ++F     AC+ L  L  G   H  +LR     L  DV+V  +L++MY KCG L+ 
Sbjct: 131 RPDKFSFSIAIEACSNLEDLEQGREIHE-MLRREGKELHKDVVVGTALLNMYSKCGDLEE 189

Query: 292 ARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           AR+VF+S+    D   WN++I  +A HGR + AL  +  +      +P   TFV V+  C
Sbjct: 190 ARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVC 249

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
                + +GR      +   N    L     LV +  + G +DEAL +  +M +K D + 
Sbjct: 250 AELSALKQGR-AIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLK-DEIS 307

Query: 411 WRSLLDA 417
           W +++ +
Sbjct: 308 WNTIISS 314



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 17/226 (7%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
              + ++ +  C  +S LKQ  A   R         LL+ + ++H +     LD A  VF
Sbjct: 238 KQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVF 297

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           + ++  +  +WNT+I + A    +  QA++L+Q M  QG V P + TF   L AC++   
Sbjct: 298 HSMKLKDEISWNTIISSYAYHGHSD-QALLLYQEMDLQG-VKPTEVTFVGLLSACSHGGL 355

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHF------YASCGHLDLANKVFDNM-LERSLVS 203
            + G       F R +  D  I  S+ HF          G L  A  V  +M ++ + V 
Sbjct: 356 VADGLD----YFYR-MQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQ 410

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAG 247
           W  ++ A    G+    ++   ++  ++ +   GY   S   A AG
Sbjct: 411 WMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAG 456


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 314/535 (58%), Gaps = 12/535 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D   ++F ++   +  +WNT+I   A++     +A+ + + M ++ N+ PD  T    L
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQN-GMYEEALNMVKEMGKE-NLRPDSFTLSSIL 206

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
                    ++GK+ H +  + G   DV+I +SLI  YA C  ++L+   F  +  R  +
Sbjct: 207 PIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAI 266

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN +I   VQ G FD  L  FRRM +   +P   +F S+  ACA L  L+LG   HAYI
Sbjct: 267 SWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYI 326

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES--MPKRDLTSWNSIILGFALHGR 319
           +R        +  + +SL+DMY KCG++ +AR +F    M  RD+ SW +II+G A+HG 
Sbjct: 327 IRL---GFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGH 383

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           A  A+  F+ ++V+    P  + F+ VL+AC+H G+V EG  YF+ M  ++ + P LEHY
Sbjct: 384 ALDAVSLFEEMLVD-GVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHY 442

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
             + DLL RAG ++EA   +SNM  +P   +W +LL A C+ H ++ L+E+V  +++  +
Sbjct: 443 AAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLL-AACRAHKNIELAEKVVNKILLVD 501

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
            G   G +V++S +Y++A+RW D   +R  M   G+ K P CS IE+    H F AGD S
Sbjct: 502 PG-NMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKS 560

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP   +I   L+++ E+++  GY  D ++  + D  ++ K+  LR HSERLAIA GI++ 
Sbjct: 561 HPYYDKINEALNILLEQMEKEGYVLDTNEV-LHDVDEEHKRDLLRTHSERLAIAFGIIST 619

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G  IRV KN+RVC DCH   K +++I   EIIVRD +RFHHFK+GSCSC DYW
Sbjct: 620 TSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/567 (39%), Positives = 316/567 (55%), Gaps = 14/567 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +Q+HA++L+  LP      ++ S +  +A    L  A RVF ++ +P++  W  LI A  
Sbjct: 91  EQLHARSLK--LPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 148

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
            + D + +A+ + +     G + PD  T    L ACA +   + G+       + G+   
Sbjct: 149 DAGDLR-EAVHVARNAFANG-MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQS 206

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V++  + +  Y  CG +  A +VFD M  +  V+W  M+  +   G    AL LF  MQ 
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 266

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCG 287
              +PD Y      SAC  L  L LG  A    +R  D    + + ++  +LIDMY KCG
Sbjct: 267 EGMKPDCYAVAGALSACTRLGALDLGRQA----IRMVDWDEFLDNPVLGTALIDMYAKCG 322

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           S   A  VF+ M K+D+  WN++ILG  + G  + A     ++  +     N  TF+G+L
Sbjct: 323 STVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQME-KSGVKLNDNTFIGLL 381

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
            +C H G++ +GR YF  M   Y+I+P +EHYGC+VDLL+RAG + EA  LV +MPM  +
Sbjct: 382 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPAN 441

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           AVI  +LL  C K H +  L+E V KQ+I  E    SG YV+LS +Y++  RW D   +R
Sbjct: 442 AVILGALLGGC-KIHRNTELAEHVLKQLILLEP-WNSGNYVMLSNIYSNRGRWEDAAKLR 499

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
             M  KGV K P CS +E +G  HEF  GD SHP + QIY  LD +  ++K+ GY P  +
Sbjct: 500 LDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPT-T 558

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           +  M D  D+ K+ +L  HSE+LAIA  +L   PG  IRV KNLRVC DCH   KL+SRI
Sbjct: 559 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRI 618

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + EIIVRD  RFH F+DGSCSC DYW
Sbjct: 619 THREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 14/288 (4%)

Query: 133 PDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P   T P ALK+ + L      G+Q HA   K    ++ ++  SL+  YA CG L  A +
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           VFD M   S V W  +I A++  G+   A+ + R        PD +T   + +ACA +A 
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187

Query: 251 LSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           L+ G  +W  A         +   V V  + +D+Y KCG +  AR+VF+ M  +D  +W 
Sbjct: 188 LATGETVWRAAE-----QEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWG 242

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-I 367
           +++ G+A +G    AL  F  +   E   P+     G LSAC   G +  GR    ++  
Sbjct: 243 AMVGGYASNGHPREALDLFLAMQA-EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 301

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +E+   PVL     L+D+ A+ G+  EA  +   M  K D ++W +++
Sbjct: 302 DEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQM-RKKDIIVWNAMI 346


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 293/523 (56%), Gaps = 47/523 (8%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
           N + D  TFPF LK+   L +   GK  H  I + GL  D+Y+  SLI  Y  CG ++ A
Sbjct: 129 NGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDA 188

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-------------------- 229
            KVFDNM  R + SWN ++  + + G  D+AL +F RM                      
Sbjct: 189 GKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQ 248

Query: 230 ----LFE----------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
               LF+          P+  T  S+  ACA L+TL  G   H      C   L ++  V
Sbjct: 249 QALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELA---CRMGLNSNASV 305

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
             +L  MY KCGSL  AR  F+ + +  ++L +WN++I  +A +G    A+  F R +++
Sbjct: 306 LIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTF-REMIQ 364

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ ITF G+LS C+H G+V  G  YF+ M   Y+I P +EHY C+ DLL RAG + 
Sbjct: 365 AGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLA 424

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESEGGICSGVYVLLS 451
           EA  LV  MPM     IW SLL A C+KH ++ ++E  A++  V+E E    +G YVLLS
Sbjct: 425 EASKLVGEMPMPAGPSIWGSLL-AACRKHRNLEMAETAARKLFVLEPEN---TGNYVLLS 480

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YA A RW +V  +R ++  +G  K PGCS IEI+G AH F  GDTSHPQ K+IY FL+
Sbjct: 481 NMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLE 540

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            + EK+K+ GY PD S   + D  ++ K+ +L  HSE+LA+A GILN      +RV KNL
Sbjct: 541 ALPEKMKAAGYFPDTSY-VLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNL 599

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+C DCH     IS I+  E+IVRD  RFHHFK G CSC DYW
Sbjct: 600 RICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 119/259 (45%), Gaps = 12/259 (4%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI-EQGNVLPDKHTFPFA 141
           +D A  +F ++   N  +W T+I   ++S  A+ QA+ LF  M+ E   V P+  T    
Sbjct: 216 IDAALAIFERMPWRNIVSWTTMISGYSQSGLAQ-QALSLFDEMVKEDSGVRPNWVTIMSV 274

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD--NMLER 199
           L ACA L    +G+Q H    + GL S+  +  +L   YA CG L  A   FD  N  E+
Sbjct: 275 LPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEK 334

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC--AGLATLSLGMW 256
           +L++WN MI A+  +G    A+  FR M Q   +PD  TF  + S C  +GL  + L  +
Sbjct: 335 NLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYF 394

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFA 315
            H        +S+   V     + D+  + G L  A ++   MP     S W S++    
Sbjct: 395 NH----MSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 450

Query: 316 LHGRAEAALKYFDRLVVEE 334
            H   E A     +L V E
Sbjct: 451 KHRNLEMAETAARKLFVLE 469


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 312/528 (59%), Gaps = 10/528 (1%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           R+F  ++  +S +W  +I    ++   + +A+ +F+ M   G  + D+ TF   L AC  
Sbjct: 225 RLFCGLKERDSISWTIMITGLMQN-GLEREALDMFREMRLAGFAM-DQFTFGSVLTACGS 282

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L A  +GKQ HA++ +     +V++ ++L+  Y+ C  +  A  VF  M +++++SW  M
Sbjct: 283 LLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAM 342

Query: 208 IDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +  + Q G  + A+K+F  MQ    EPD +T  S+ S+CA LA+L  G   H    R   
Sbjct: 343 LVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHC---RALV 399

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L++ + V+N+LI +Y KCGS + + ++F  M  RD  SW +++ G+A  G+A   +  
Sbjct: 400 SGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGL 459

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+R++      P+ +TF+GVLSAC+  G+V +G  YF+ MI E+ I P+++H  C++DLL
Sbjct: 460 FERMLAH-GLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLL 518

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG ++EA + ++NMP  PD V W +LL +C + H  + + +  A  +I  E       
Sbjct: 519 GRAGRLEEARNFINNMPCHPDVVGWATLLSSC-RVHGDMEIGKWAADSLIALEPQ-NPAS 576

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +YAS  +W+ V  +R+ M DK V KEPG S I+  G  H F A D S P   QI
Sbjct: 577 YVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQI 636

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L+ ++ K+   GY PD S + + D  +  K   L  HSE+LAIA G++ + PG+PIR
Sbjct: 637 YAELEKLNYKMIEEGYVPDMS-SVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIR 695

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCH  TK IS+I   EI+VRD  RFH FKDG+CSC D+W
Sbjct: 696 VIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 218/489 (44%), Gaps = 73/489 (14%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           S N ++SLL    E ++ +Q K++H   L+T   +Q +T L  + I  +    +L YA  
Sbjct: 4   SSNYYASLLKLCCESQNQTQAKKLHCLILKTI--KQPETFLSNNLITAYYKLGNLAYAHH 61

Query: 89  VFYQIENPNSFTWNTLIRACAR------------------------------SVDAKPQA 118
           VF  I  PN F+WNT++   ++                              +  +   A
Sbjct: 62  VFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDA 121

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           + +++ M++   +  ++ TF   L  C+       G+Q +  I K G  SDV++ + L+ 
Sbjct: 122 VRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVD 181

Query: 179 FYASCGHLDLANKVFDNMLERSLV-------------------------------SWNVM 207
            Y   G +  A + FD M ER++V                               SW +M
Sbjct: 182 MYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIM 241

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I   +Q G    AL +FR M++  F  D +TF S+ +AC  L  L  G   HAY++R  D
Sbjct: 242 ITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIR-TD 300

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           H    +V V ++L+DMY KC S+  A  VF+ MP++++ SW ++++G+  +G +E A+K 
Sbjct: 301 HK--DNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKI 358

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +       P+  T   V+S+C +   + EG   F        +   +     L+ L 
Sbjct: 359 FFEM-QRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLY 416

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGIC 443
            + G+ + +  L + M ++ D V W +LL       K + ++ L E +    ++ +G   
Sbjct: 417 GKCGSTENSHRLFTEMNIR-DEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTF 475

Query: 444 SGVYVLLSR 452
            GV    SR
Sbjct: 476 IGVLSACSR 484



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 165/356 (46%), Gaps = 18/356 (5%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M   ++Q G    +  +  +F   R  G   +  +  S LT C S+  L   KQIHA  +
Sbjct: 241 MITGLMQNGL---EREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVI 297

Query: 58  RTALPQQHK-TLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK 115
           RT     HK  + + S ++  ++    +  A  VF ++   N  +W  ++    ++  ++
Sbjct: 298 RT----DHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSE 353

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
               + F+  +++  V PD  T    + +CA L +  +G Q H      GL+S + ++N+
Sbjct: 354 EAVKIFFE--MQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNA 411

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPD 234
           LI  Y  CG  + ++++F  M  R  VSW  ++  + QFG+ +  + LF RM     +PD
Sbjct: 412 LITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPD 471

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
           G TF  + SAC+    +  G+     +++  +H ++  V     +ID+  + G L+ AR 
Sbjct: 472 GVTFIGVLSACSRAGLVEKGLQYFESMIK--EHGIMPIVDHCTCIIDLLGRAGRLEEARN 529

Query: 295 VFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
              +MP   D+  W +++    +HG  E      D L+  E  +P S   +  L A
Sbjct: 530 FINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYA 585


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 335/586 (57%), Gaps = 19/586 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S L +  E   M+  + +H   ++  L +     ++   +  ++   D+D A  +F ++
Sbjct: 216 ASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH--VVTGLMSLYSKCGDMDSAQFLFDRM 273

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +NP+   +N LI     SV+   ++ V LF+ +   G   P+  T    +   +      
Sbjct: 274 DNPDLVAYNALI--SGYSVNGMVESSVELFKELTASG-WRPNSSTLVAVIPVYSPFGHEL 330

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
             +  HA + K  L +D  ++ +L   Y     ++ A  +FD MLE+++ SWN MI  + 
Sbjct: 331 LARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYA 390

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q G  + A+ LF+ MQ L  +P+  T  S  SACA L  LSLG W H  I +     L  
Sbjct: 391 QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKE---KLEL 447

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +V V  +LIDMY KCGS+  AR +F+ M  +++ SWN++I G+ LHG+   ALK +  ++
Sbjct: 448 NVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDML 507

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +    P S TF+ V+ AC+H G+V EG+  F VM NEY ITP +EH  C+VDLL RAG 
Sbjct: 508 -DARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGK 566

Query: 392 IDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIE--SEGGICSGVYV 448
           ++EAL L+S  P       +W +LL AC   H +  L++  ++++ E  SE    +G YV
Sbjct: 567 LNEALELISEFPQSAIGPGVWGALLGACMV-HKNSDLAKLASQKLFELDSEN---AGYYV 622

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +Y S + +++  +VR+    + + K PGC+ IEI    H F AGD  HPQ++ IY 
Sbjct: 623 LLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYS 682

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           +L+ +  K+   GY P  ++AA+ D  ++ K+  +++HSE+LAIA G+L+ +PG  IR+ 
Sbjct: 683 YLERLTAKMIEAGYQP-VTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRII 741

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH  TK IS++    I+VRD +RFHHF+DG CSC DYW
Sbjct: 742 KNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 173/333 (51%), Gaps = 12/333 (3%)

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           D A +VF  + +P++  WNTL+     S     +A+  F RM++ G V PD  T   +L+
Sbjct: 166 DDARKVFDTVPSPDTILWNTLLAGLPGS-----EALEAFVRMVDAGRVRPDSTTLASSLR 220

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A A     + G+  H +  K GL    ++   L+  Y+ CG +D A  +FD M    LV+
Sbjct: 221 AAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVA 280

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           +N +I  +   G  +S+++LF+ +    + P+  T  ++    +      L    HA+++
Sbjct: 281 YNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVV 340

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           +     L  D LV+ +L  +YC+   ++ AR +F++M ++ + SWN++I G+A +G  E 
Sbjct: 341 K---ARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEM 397

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A+  F +L+ E +  PN IT    LSAC H G +S G+ +   +I++  +   +     L
Sbjct: 398 AVALF-QLMQELNVQPNPITISSTLSACAHLGALSLGK-WVHRIISKEKLELNVYVMTAL 455

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +D+ A+ G+I EA  +   M  K + V W +++
Sbjct: 456 IDMYAKCGSIAEARSIFDRMDNK-NVVSWNAMI 487



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 158/391 (40%), Gaps = 72/391 (18%)

Query: 74  IIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           ++ +AS  A   +  R+F     P+ F  N L+R+       +P   +LF          
Sbjct: 60  LLRYASLRAPPSHLLRLFRAFPCPDRFLRNALLRSLP---SLRPH--LLFPS-------- 106

Query: 133 PDKHTFPFALKACAYLFAF-----SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           PD  +F FA  + +   +      +  +  H      G  +D ++ ++L   Y      D
Sbjct: 107 PDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGD 166

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSAC 245
            A KVFD +     + WN ++           AL+ F RM       PD  T  S   A 
Sbjct: 167 DARKVFDTVPSPDTILWNTLLAGLPG----SEALEAFVRMVDAGRVRPDSTTLASSLRAA 222

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A  + +++G   H Y ++ C   L     V   L+ +Y KCG +D A+ +F+ M   DL 
Sbjct: 223 AEASHMAMGRCVHGYGVK-C--GLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLV 279

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV-----------LSACNHRG 354
           ++N++I G++++G  E++++ F  L     + PNS T V V           L+ C H  
Sbjct: 280 AYNALISGYSVNGMVESSVELFKELTA-SGWRPNSSTLVAVIPVYSPFGHELLARCLHAF 338

Query: 355 MV------------------------SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +V                           R  FD M+ +      +E +  ++   A+ G
Sbjct: 339 VVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEK-----TMESWNAMISGYAQNG 393

Query: 391 NIDEAL---HLVSNMPMKPDAVIWRSLLDAC 418
             + A+    L+  + ++P+ +   S L AC
Sbjct: 394 LTEMAVALFQLMQELNVQPNPITISSTLSAC 424


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 334/591 (56%), Gaps = 22/591 (3%)

Query: 32  NHSSLLSSLTECKSMSQ---LKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  +LL+ L  C+   Q   LK+IH  ALR    Q  + L+  + +  +A    L YA  
Sbjct: 399 NEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDE-LVANAFVAGYAKCGSLHYAEG 457

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  +E+    +WN LI    +  +  P+  +    ++    + PD  T    L ACA L
Sbjct: 458 VFCGMESKMVSSWNALIGGHVQ--NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL 515

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            + S GK+ H  + + G   D +I  SL+  Y  CG + LA   FDNM E++LV WN MI
Sbjct: 516 KSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMI 575

Query: 209 DAFVQFGEFD-SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH-- 264
           + F Q  EF   AL +F +M      PD  +      AC+ ++ L LG   H + ++   
Sbjct: 576 NGFSQ-NEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHL 634

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
            +HS VT      SLIDMY KCG ++ ++ +F+ +  +   +WN +I G+ +HG    A+
Sbjct: 635 TEHSFVT-----CSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAI 689

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           + F  +     F P+S+TF+ +L+ACNH G+V+EG +Y   M + + I P LEHY C+VD
Sbjct: 690 ELFKSMQ-NAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVD 748

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           +L RAG ++EAL LV+ +P KPD+ IW SLL + C+ +  + + E+VA +++E  G   +
Sbjct: 749 MLGRAGRLNEALELVNELPDKPDSRIWSSLLSS-CRNYRDLDIGEKVANKLLEL-GPDKA 806

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
             YVL+S  YA   +W++V  +R+ M + G+ K+ GCS IEI G    F  GD S  Q+ 
Sbjct: 807 ENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSM 866

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL-DDGKQSSLRLHSERLAIALGILNLKPGM 563
           +I      +++K+   GY PD S   ++ EL +D K   LR HSE+LAI+ G+LN   G 
Sbjct: 867 KIQQTWIELEKKINKIGYKPDTS--CVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGT 924

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +RV KNLR+C DCH   KL+S+I   EIIVRD  RFHHFK+G CSC DYW
Sbjct: 925 TLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 160/319 (50%), Gaps = 11/319 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY-AFRVFYQIE 94
           LL    E K++   ++IH     +  P     +++ +R++   S  D  Y +  VF    
Sbjct: 99  LLQLCGEYKNIEIGRKIHN--FISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASR 156

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             N F WN L+    R+   +  A+ +F  MI     +PD  T P  +KAC  ++    G
Sbjct: 157 RKNLFLWNALLSGYLRNSLFR-DAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLG 215

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H    K  ++SDV++ N+LI  Y   G ++ A KVFD M +R+LVSWN ++ A ++ 
Sbjct: 216 EAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLEN 275

Query: 215 GEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           G F+ +  LF+ +    E   PD  T  ++   CA    + LGM  H   L+     L  
Sbjct: 276 GVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALK---LGLCG 332

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           ++ VN+SL+DMY KCG L  AR +F++  K ++ SWNS+I G++       A +   ++ 
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLFDTNEK-NVISWNSMIGGYSKDRDFRGAFELLRKMQ 391

Query: 332 VEESFSPNSITFVGVLSAC 350
           +E+    N +T + VL  C
Sbjct: 392 MEDKVKVNEVTLLNVLPVC 410



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 12/310 (3%)

Query: 6   VQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQH 65
           VQ G P      + +   +  E      +SLLS+    KS+S  K+IH   LR     + 
Sbjct: 478 VQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF--EL 535

Query: 66  KTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
              +  S +  +     +  A   F  +E  N   WNT+I   +++ +    A+ +F +M
Sbjct: 536 DEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQN-EFPFDALDMFHQM 594

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +    + PD+ +   AL AC+ + A   GK+ H    K  L    ++  SLI  YA CG 
Sbjct: 595 LSS-KIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGC 653

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSA 244
           ++ +  +FD +  +  V+WNV+I  +   G    A++LF+ MQ   F PD  TF ++ +A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 245 C--AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-K 301
           C  AGL    L        L      L     V    +DM  + G L+ A ++   +P K
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACV----VDMLGRAGRLNEALELVNELPDK 769

Query: 302 RDLTSWNSII 311
            D   W+S++
Sbjct: 770 PDSRIWSSLL 779


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 330/584 (56%), Gaps = 12/584 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            +  LL + T    ++  +QIH  +++T          +   I  ++ +  LD A R+  
Sbjct: 347 TYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVL--IDMYSKYGWLDKARRILE 404

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +E  +  +W ++I    +    K +A+  F+ M   G + PD      A+ ACA + A 
Sbjct: 405 VLEAKDVVSWTSMIAGYVQHEFCK-EALETFKDMQLFG-IWPDNIGLASAISACAGIKAM 462

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            QG+Q H+ ++  G  +DV I N+L++ YA CG    A  +F+ +  +  ++WN M+  F
Sbjct: 463 RQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGF 522

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G ++ AL++F +M Q   + + +TF S  SA A LA +  G   HA +++       
Sbjct: 523 AQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT---GCT 579

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           ++  V N+LI +Y KCGS++ A+  F  M +R+  SWN+II   + HG    AL  FD++
Sbjct: 580 SETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQM 639

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +E   PN +TF+GVL+AC+H G+V EG  YF  M +E+ I P  +HY C+VD+L RAG
Sbjct: 640 K-QEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAG 698

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            +D A   V  MP+  +A++WR+LL A C+ H ++ + E  AK ++E E    S  YVLL
Sbjct: 699 QLDRARKFVEEMPVSANAMVWRTLLSA-CRVHKNIEIGELAAKYLLELEPHD-SASYVLL 756

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S  YA   +W     VRK+M D+GV KEPG S IE+  + H FF GD  HP   QIY +L
Sbjct: 757 SNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYL 816

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             +D++L   GY    +     ++  + K  +  +HSE+LA+A G+++L P MP+RV KN
Sbjct: 817 ADLDDRLAKIGYIQG-NYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKN 875

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   K  S +   EI++RD  RFHHF +G+CSC D+W
Sbjct: 876 LRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 190/403 (47%), Gaps = 14/403 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           IF   R  G   +  ++ S L  C S+  L   KQ+H+  L+  +   +  ++  S +  
Sbjct: 231 IFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDY--IIEGSLLDL 288

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     +  A  +F   +  N   WN ++ A  +  D   ++  LF +M+  G V P++ 
Sbjct: 289 YVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL-AKSFDLFCQMVAAG-VRPNEF 346

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+P  L+ C Y    + G+Q H    K G  SD+Y++  LI  Y+  G LD A ++ + +
Sbjct: 347 TYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVL 406

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             + +VSW  MI  +VQ      AL+ F+ MQ+    PD     S  SACAG+  +  G 
Sbjct: 407 EAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQ 466

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H+ +          DV + N+L+++Y +CG    A  +FE++  +D  +WN ++ GFA
Sbjct: 467 QIHSRVYV---SGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFA 523

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             G  E AL+ F ++  +     N  TFV  +SA  +   + +G+     +I     T  
Sbjct: 524 QSGLYEEALEVFIKM-YQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSE 581

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            E    L+ L  + G+I++A      M  + + V W +++ +C
Sbjct: 582 TEVANALISLYGKCGSIEDAKMQFFEMSER-NHVSWNTIITSC 623



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 190/396 (47%), Gaps = 19/396 (4%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQH--KTLLIYSRIIHFASFAD 82
           R  GS +   +L       K    +  IHA+A+   L +      LLI      +A    
Sbjct: 37  RGLGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDL----YAKKGL 92

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +  A RVF Q+   ++ +W  ++   AR+     +A+ L+ +M   G V+P  +     L
Sbjct: 93  VQRARRVFEQLSARDNVSWVAMLSGYARN-GLGEEAVGLYHQMHCSG-VVPTPYVLSSVL 150

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC     F QG+  HA ++K+G  S+  + N+LI  Y   G L LA +VF  M     V
Sbjct: 151 SACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRV 210

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           ++N +I    Q G  +SAL++F  M++  + PD  T  S+ +ACA +  L+ G   H+Y+
Sbjct: 211 TFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYL 270

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+     +  D ++  SL+D+Y KCG +  A ++F+S  + ++  WN +++ +   G+  
Sbjct: 271 LK---AGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAY---GQIS 324

Query: 322 AALKYFDRL--VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              K FD    +V     PN  T+  +L  C + G ++ G     + I        +   
Sbjct: 325 DLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT-GFESDMYVS 383

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           G L+D+ ++ G +D+A  ++  +  K D V W S++
Sbjct: 384 GVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMI 418


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 279/447 (62%), Gaps = 5/447 (1%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           D +  N+++  Y  CG L+ A +VF  M ER LVSW+ MIDA ++ GEF  AL++F +M 
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242

Query: 229 I-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
              F PD     S+  ACA L  L  G W H ++          +V++  +L+DMYCKCG
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            +D A  VF+ +  +D+  WN++I G A++G  + AL+ F R++ +  F PN  TFV VL
Sbjct: 303 CMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRML-DMGFVPNESTFVVVL 361

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
            AC H G V EG++ F  M + + I P  EHYGCL DLL RAG ++EA  ++ +MPM+P 
Sbjct: 362 CACTHTGRVDEGKEIFRSMCD-HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPH 420

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           A  W +L+ +C   H +V + E V K++IE E     G YV+L  +YA    W D   +R
Sbjct: 421 ASQWGALMSSCLM-HNNVGVGERVGKKLIELEPDD-GGRYVVLFNLYAVNGLWEDAKALR 478

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           K+M ++G  KE G S IE +G+ HEF +GDT HPQT+QIY  L+ ++++L+  GY  D S
Sbjct: 479 KMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTS 538

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           Q  M  + ++ K ++L  HSERLA+A GILN    MPIR+ KNLRVC+DCH   KL+S++
Sbjct: 539 QVLMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKL 598

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +  EII+RDR RFH F+ G CSC D+W
Sbjct: 599 YQREIIMRDRHRFHLFRGGVCSCNDFW 625



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 116/261 (44%), Gaps = 12/261 (4%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL+ A  VF ++      +W+ +I AC R+ +   +A+ +F +M+  G   PD  
Sbjct: 194 YGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFS-EALRMFDQMMGNG-FRPDAV 251

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGL---VSDVYINNSLIHFYASCGHLDLANKVF 193
                LKACA+L A  +G+  H  +   GL     +V +  +L+  Y  CG +D A  VF
Sbjct: 252 VLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVF 311

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D +  + +V WN MI      G    AL+LFRRM  + F P+  TF  +  AC     + 
Sbjct: 312 DGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVD 371

Query: 253 LGMWAHAYILRH-CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSI 310
            G      I R  CDH +         L D+  + G L+ A  V   MP     S W ++
Sbjct: 372 EG----KEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGAL 427

Query: 311 ILGFALHGRAEAALKYFDRLV 331
           +    +H       +   +L+
Sbjct: 428 MSSCLMHNNVGVGERVGKKLI 448



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           +LGM + A  +     +   D    N+++  Y KCG L+ AR+VF  MP+R L SW+++I
Sbjct: 163 ALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMI 222

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-Y 370
                 G    AL+ FD++ +   F P+++    VL AC H G +  GR     +  E  
Sbjct: 223 DACIRAGEFSEALRMFDQM-MGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGL 281

Query: 371 NITP---VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +P   +LE    LVD+  + G +DEA  +   +  + D V+W +++
Sbjct: 282 GRSPDNVMLET--ALVDMYCKCGCMDEAWWVFDGVQSQ-DVVLWNAMI 326


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 325/569 (57%), Gaps = 26/569 (4%)

Query: 61  LPQQHKTLLIYSRIIH--FASFADLDY---------AFRVFYQIENPNSFTWNTLIRACA 109
           L QQ  + +I +  +   F S A LD+         A ++F ++   +  ++N +I   A
Sbjct: 268 LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA 327

Query: 110 RSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGL 166
              D K + A  LF+ +  Q     D+  FPFA  L   +    +  G+Q HA       
Sbjct: 328 W--DGKHKYAFDLFREL--QFTAF-DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            S++ + NSL+  YA CG  + A  +F N+  RS V W  MI A+VQ G ++  L+LF +
Sbjct: 383 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNK 442

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M Q     D  TF S+  A A +A+LSLG   H++I++      +++V   ++L+D+Y K
Sbjct: 443 MRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS---GFMSNVFSGSALLDVYAK 499

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGS+  A Q F+ MP R++ SWN++I  +A +G AEA LK F  +V+     P+S++F+G
Sbjct: 500 CGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS-GLQPDSVSFLG 558

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VLSAC+H G+V EG  +F+ M   Y + P  EHY  +VD+L R+G  +EA  L++ MP+ 
Sbjct: 559 VLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPID 618

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           PD ++W S+L+AC + H +  L+   A Q+   E    +  YV +S +YA+A +W +V  
Sbjct: 619 PDEIMWSSVLNAC-RIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSK 677

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           V K M D+GV K P  S +EI    H F A D  HPQ ++I   +D++ + ++  GY PD
Sbjct: 678 VHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPD 737

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            S  A+ +E +  K  SL+ HSERLAIA  +++   G PI V KNLR C DCH   K+IS
Sbjct: 738 TS-CALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVIS 796

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +I   EI VRD  RFHHF+DG CSC D+W
Sbjct: 797 KIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 186/385 (48%), Gaps = 13/385 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LLS     +  +Q+ Q+  Q ++  L    + ++  + +  +     LD A ++F ++ 
Sbjct: 154 TLLSGCNGHEMGNQITQVQTQIIK--LGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 211

Query: 95  NPNSFTWNTLIRACAR-SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             +S ++N +I   ++  +D K  A+ LF  M   G + P + TF   L A   L     
Sbjct: 212 EIDSVSYNAMITGYSKDGLDEK--AVNLFVEMQNSG-LKPTEFTFAAVLCANIGLDDIVL 268

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H+ + K   V +V+++N+L+ FY+    +  A K+FD M E+  VS+NV+I  +  
Sbjct: 269 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 328

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+   A  LFR +Q   F+   + F ++ S  +      +G   HA  +     S   +
Sbjct: 329 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADS---E 385

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           +LV NSL+DMY KCG  + A  +F ++  R    W ++I  +   G  E  L+ F+++  
Sbjct: 386 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKM-R 444

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           + S   +  TF  +L A      +S G+     +I    ++ V      L+D+ A+ G+I
Sbjct: 445 QASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSG-SALLDVYAKCGSI 503

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDA 417
            +A+     MP + + V W +++ A
Sbjct: 504 KDAVQTFQEMPDR-NIVSWNAMISA 527



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 144/283 (50%), Gaps = 8/283 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +QIHAQ + T    +   L+  S +  +A     + A  +F  + + ++  W  +I A  
Sbjct: 371 RQIHAQTIVTTADSE--ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYV 428

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           +      + + LF +M  Q +V+ D+ TF   L+A A + + S GKQ H+ I K G +S+
Sbjct: 429 QK-GFYEEGLQLFNKM-RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSN 486

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V+  ++L+  YA CG +  A + F  M +R++VSWN MI A+ Q GE ++ LK F+ M +
Sbjct: 487 VFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVL 546

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              +PD  +F  + SAC+    +  G+W    + +   + L        S++DM C+ G 
Sbjct: 547 SGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI--YKLDPRREHYASVVDMLCRSGR 604

Query: 289 LDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            + A ++   MP   D   W+S++    +H   E A +  D+L
Sbjct: 605 FNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQL 647



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 10/254 (3%)

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            SQ +Q    +  +  VS     N +I  Y   G+L  A K+FD M+ER+ V+W ++I  
Sbjct: 68  LSQARQLFEKMPHKNTVS----TNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGG 123

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q  +F  A +LF +MQ    EPD  TF ++ S C G    +        I++    S 
Sbjct: 124 YSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDS- 182

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              ++V N+L+D YCK   LD+A Q+F+ MP+ D  S+N++I G++  G  E A+  F  
Sbjct: 183 --RLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVE 240

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +       P   TF  VL A      +  G+     +I    +  V      L+D  ++ 
Sbjct: 241 M-QNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVS-NALLDFYSKH 298

Query: 390 GNIDEALHLVSNMP 403
            ++ +A  L   MP
Sbjct: 299 DSVIDARKLFDEMP 312



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 32/179 (17%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           D   +N  +  + K G L  ARQ+FE MP ++  S N +I G+   G    A K FD +V
Sbjct: 51  DTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMV 110

Query: 332 -------------------VEESF-----------SPNSITFVGVLSACNHRGMVSEGRD 361
                               +E+F            P+ +TFV +LS CN   M ++   
Sbjct: 111 ERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQ 170

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                I +      L     LVD   ++  +D A  L   MP + D+V + +++    K
Sbjct: 171 -VQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP-EIDSVSYNAMITGYSK 227


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/542 (38%), Positives = 316/542 (58%), Gaps = 9/542 (1%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I+ +A    L+ A ++F ++   ++F+WN  I         + +A+ LF+ M        
Sbjct: 160 IVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPR-EALELFRVMQRHERSSS 218

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +K T   AL A A +     GK+ H ++ +  L  D  + ++L+  Y  CG LD A  +F
Sbjct: 219 NKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIF 278

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLS 252
           D M +R +VSW  MI    + G  +    LFR  MQ    P+ YTF  + +ACA  A   
Sbjct: 279 DQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEH 338

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG   H Y++ H  +   +  +  ++L+ MY KCG+  +AR+VF  M + DL SW S+I+
Sbjct: 339 LGKEVHGYMM-HAGYDPGSFAI--SALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIV 395

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A +G+ + AL +F+ L+++    P+ +T+VGVLSAC H G+V +G +YF  +  ++ +
Sbjct: 396 GYAQNGQPDEALHFFE-LLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGL 454

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
               +HY C++DLLAR+G   EA +++ NMP+KPD  +W SLL  C + H ++ L++  A
Sbjct: 455 MHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGC-RIHGNLELAKRAA 513

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           K + E E       Y+ L+ +YA+A  W++V  VRK M + G+ K+PG S IEI    H 
Sbjct: 514 KALYEIEPE-NPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHV 572

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F  GDTSHP+T  I+ FL  + +K+K  GY PD +   + D  ++ K+ +L  HSE+LA+
Sbjct: 573 FLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPD-TNFVLHDVEEEQKEQNLVYHSEKLAV 631

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
             GI++  PG PI+VFKNLR C DCH   K IS+I   +I VRD  RFH F+DGSCSC D
Sbjct: 632 VFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKD 691

Query: 613 YW 614
           YW
Sbjct: 692 YW 693



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 141/316 (44%), Gaps = 39/316 (12%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG-------- 184
           P    +   + AC    A   G++ HAH      V  V+I+N L+  YA CG        
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 185 -----HLDL------------------ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
                H DL                  A K+FD M +R   SWN  I  +V   +   AL
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 222 KLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           +LFR MQ       + +T  S  +A A +  L LG   H Y++R     L  D +V ++L
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIR---TELNLDEVVWSAL 261

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           +D+Y KCGSLD AR +F+ M  RD+ SW ++I      GR E     F R +++    PN
Sbjct: 262 LDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLF-RDLMQSGVRPN 320

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
             TF GVL+AC        G++    M++     P       LV + ++ GN   A  + 
Sbjct: 321 EYTFAGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSFAISALVHMYSKCGNTRVARRVF 379

Query: 400 SNMPMKPDAVIWRSLL 415
           + M  +PD V W SL+
Sbjct: 380 NEM-HQPDLVSWTSLI 394



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 104/248 (41%), Gaps = 50/248 (20%)

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           +D   Q      A++L  R      P    + ++ +AC     L LG   HA+       
Sbjct: 62  VDVLCQQKRVKEAVELLHRTD--HRPSARVYSTLIAACVRHRALELGRRVHAHTKAS--- 116

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           + V  V ++N L+DMY KCGSL  A+ +F+ M  RDL SWN++I+G+A  GR E A K F
Sbjct: 117 NFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLF 176

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-------------------- 367
           D +   ++FS N+      +S         E  + F VM                     
Sbjct: 177 DEMPQRDNFSWNA-----AISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASA 231

Query: 368 -----------------NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
                             E N+  V+  +  L+DL  + G++DEA  +   M  + D V 
Sbjct: 232 AIPCLRLGKEIHGYLIRTELNLDEVV--WSALLDLYGKCGSLDEARGIFDQMKDR-DVVS 288

Query: 411 WRSLLDAC 418
           W +++  C
Sbjct: 289 WTTMIHRC 296


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/593 (36%), Positives = 333/593 (56%), Gaps = 18/593 (3%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL----KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           G   +  ++ S L  C S+ +     +Q+H  AL+  +     + +  + I  ++    +
Sbjct: 393 GLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLD--SFVSTALIDVYSKGGKM 450

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           + A  +F+  +  +  +WN ++     S D   +A+ LF  M E+G    D+ TF  A K
Sbjct: 451 EEAELLFHNQDGFDLASWNAMMHGFTVS-DNYREALRLFSLMHERGEK-ADQITFANAAK 508

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A   L    QGKQ HA + K     D+++ + ++  Y  CG +  A KVF+ +     V+
Sbjct: 509 AAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVA 568

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           W  +I   V+ GE + AL  + +M++   +PD YTF ++  AC+ L  L  G   HA I+
Sbjct: 569 WTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIM 628

Query: 263 R-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           + +C      D  V  SL+DMY KCG+++ A  +F  M  R +  WN++I+G A HG AE
Sbjct: 629 KLNC----AFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAE 684

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL +F+ +      +P+ +TF+GVLSAC+H G+ S+    FD M   Y + P +EHY C
Sbjct: 685 EALNFFNEMK-SRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSC 743

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           LVD L+RAG+I EA  +VS+MP +  A ++R+LL+AC +        E VA+++   +  
Sbjct: 744 LVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNAC-RVQGDKETGERVAEKLFTMDPS 802

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             S  YVLLS +YA+A +W +    R +M    V KEPG S I++    H F AGD SH 
Sbjct: 803 D-SAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHE 861

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           +T  IY  ++ + +++K  GY PD ++ A+VD  ++ K+S+L  HSE+LAIA G++   P
Sbjct: 862 ETDLIYNKVEYVMKRIKEEGYVPD-TEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPP 920

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              +RV KNLRVC DCH   K IS +F  EI++RD  RFHHF+ G CSC DYW
Sbjct: 921 STTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 188/383 (49%), Gaps = 14/383 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +LS +     +   KQIH   +R    Q     +  S I  +     ++YA R+F Q++ 
Sbjct: 303 ILSVVASLNHLELGKQIHGAVVRFGWDQ--FVSVANSAINMYVKAGSVNYARRMFGQMKE 360

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL-FAFSQG 154
            +  +WNT+I  CARS   +  ++ LF  ++  G +LPD+ T    L+AC+ L  ++  G
Sbjct: 361 VDLISWNTVISGCARS-GLEECSLRLFIDLLRSG-LLPDQFTITSVLRACSSLEESYCVG 418

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +Q H    K G+V D +++ +LI  Y+  G ++ A  +F N     L SWN M+  F   
Sbjct: 419 RQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVS 478

Query: 215 GEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
             +  AL+LF  M    E  D  TF +   A   L  L  G   HA +++   H    D+
Sbjct: 479 DNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFH---YDL 535

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V + ++DMY KCG +  AR+VF  +P  D  +W ++I G   +G  E AL  + ++ + 
Sbjct: 536 FVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRL- 594

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
               P+  TF  ++ AC+    + +G+  + ++M       P +     LVD+ A+ GNI
Sbjct: 595 AGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNI 652

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
           ++A  L   M  +  A +W +++
Sbjct: 653 EDAYGLFRRMNTRSVA-LWNAMI 674



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD--NMLERSLVSWNVMIDAF 211
           GK+ HA I   GL  D Y+ N+LI  YA CG L  A K+FD     +R LV++N ++ A+
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 212 VQFGEF------DSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
              GE         A  +FR + Q +     +T   +   C    + S       Y ++ 
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK- 150

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L  DV V  +L+++Y K   +  AR +F+ MP RD+  WN ++  +   G  +  L
Sbjct: 151 --IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 325 KYF 327
             F
Sbjct: 209 GLF 211



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 134/326 (41%), Gaps = 38/326 (11%)

Query: 100 TWNTLIRACARS-----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           T+N ++ A A +     V+   +A  +F R++ Q  +L  +HT     K C    + S  
Sbjct: 83  TYNAILAAYAHTGELHDVEKTHEAFHIF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSAS 141

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +    +  K GL  DV++  +L++ YA    +  A  +FD M  R +V WNVM+ A+V+ 
Sbjct: 142 EALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEM 201

Query: 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           G  D  L LF           +    +   C  + T+ +G+       R  +        
Sbjct: 202 GAGDEVLGLF---------SAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQ------- 245

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
                +  Y        A ++F      D+T WN  +  +   G    A+  F R +++ 
Sbjct: 246 -----VRAY--------ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCF-RDMIKS 291

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
               +S+T++ +LS       +  G+     ++  +     +      +++  +AG+++ 
Sbjct: 292 RVPCDSLTYIVILSVVASLNHLELGKQIHGAVV-RFGWDQFVSVANSAINMYVKAGSVNY 350

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCK 420
           A  +   M  + D + W +++  C +
Sbjct: 351 ARRMFGQMK-EVDLISWNTVISGCAR 375


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 325/569 (57%), Gaps = 26/569 (4%)

Query: 61  LPQQHKTLLIYSRIIH--FASFADLDY---------AFRVFYQIENPNSFTWNTLIRACA 109
           L QQ  + +I +  +   F S A LD+         A ++F ++   +  ++N +I   A
Sbjct: 228 LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA 287

Query: 110 RSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGL 166
              D K + A  LF+ +  Q     D+  FPFA  L   +    +  G+Q HA       
Sbjct: 288 W--DGKHKYAFDLFREL--QFTAF-DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 342

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            S++ + NSL+  YA CG  + A  +F N+  RS V W  MI A+VQ G ++  L+LF +
Sbjct: 343 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNK 402

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M Q     D  TF S+  A A +A+LSLG   H++I++      +++V   ++L+D+Y K
Sbjct: 403 MRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS---GFMSNVFSGSALLDVYAK 459

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGS+  A Q F+ MP R++ SWN++I  +A +G AEA LK F  +V+     P+S++F+G
Sbjct: 460 CGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS-GLQPDSVSFLG 518

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VLSAC+H G+V EG  +F+ M   Y + P  EHY  +VD+L R+G  +EA  L++ MP+ 
Sbjct: 519 VLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPID 578

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           PD ++W S+L+AC + H +  L+   A Q+   E    +  YV +S +YA+A +W +V  
Sbjct: 579 PDEIMWSSVLNAC-RIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSK 637

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           V K M D+GV K P  S +EI    H F A D  HPQ ++I   +D++ + ++  GY PD
Sbjct: 638 VHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPD 697

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            S  A+ +E +  K  SL+ HSERLAIA  +++   G PI V KNLR C DCH   K+IS
Sbjct: 698 TS-CALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVIS 756

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +I   EI VRD  RFHHF+DG CSC D+W
Sbjct: 757 KIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 144/283 (50%), Gaps = 8/283 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +QIHAQ + T    +   L+  S +  +A     + A  +F  + + ++  W  +I A  
Sbjct: 331 RQIHAQTIVTTADSE--ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYV 388

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           +      + + LF +M  Q +V+ D+ TF   L+A A + + S GKQ H+ I K G +S+
Sbjct: 389 QK-GFYEEGLQLFNKM-RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSN 446

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V+  ++L+  YA CG +  A + F  M +R++VSWN MI A+ Q GE ++ LK F+ M +
Sbjct: 447 VFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVL 506

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              +PD  +F  + SAC+    +  G+W    + +   + L        S++DM C+ G 
Sbjct: 507 SGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI--YKLDPRREHYASVVDMLCRSGR 564

Query: 289 LDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            + A ++   MP   D   W+S++    +H   E A +  D+L
Sbjct: 565 FNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQL 607



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%)

Query: 132 LPDKHTFPFALKACAY--LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
           +P+  +F FA   CA   L     G+Q H+ + K   V +V+++N+L+ FY+    +  A
Sbjct: 205 MPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDA 264

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
            K+FD M E+  VS+NV+I  +   G+   A  LFR +Q   F+   + F ++ S  +  
Sbjct: 265 RKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 324

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
               +G   HA  +     S   ++LV NSL+DMY KCG  + A  +F ++  R    W 
Sbjct: 325 LDWEMGRQIHAQTIVTTADS---EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 381

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           ++I  +   G  E  L+ F+++  + S   +  TF  +L A      +S G+     +I 
Sbjct: 382 AMISAYVQKGFYEEGLQLFNKM-RQASVIADQATFASLLRASASIASLSLGKQLHSFIIK 440

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              ++ V      L+D+ A+ G+I +A+     MP + + V W +++ A
Sbjct: 441 SGFMSNVFSG-SALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISA 487



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 29/227 (12%)

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            SQ +Q    +  +  VS     N +I  Y   G+L  A K+FD M+ER+ V+W ++I  
Sbjct: 63  LSQARQLFEKMPHKNTVS----TNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGG 118

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q  +F  A +LF +MQ    EPD  TF ++ S C G    +        I++    S 
Sbjct: 119 YSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDS- 177

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW----------NSIILGFALHGR 319
              ++V N+L+D YCK   LD+A Q+F+ MP+ D  ++          + I+LG  +H  
Sbjct: 178 --RLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHS- 234

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
                      V++ +F  N      +L   +    V + R  FD M
Sbjct: 235 ----------FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEM 271



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 31/162 (19%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           D   +N  +  + K G L  ARQ+FE MP ++  S N +I G+   G    A K FD +V
Sbjct: 46  DTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMV 105

Query: 332 -------------------VEESF-----------SPNSITFVGVLSACNHRGMVSEGRD 361
                               +E+F            P+ +TFV +LS CN   M ++   
Sbjct: 106 ERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQ 165

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
                I +      L     LVD   ++  +D A  L   MP
Sbjct: 166 -VQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 206


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 320/528 (60%), Gaps = 10/528 (1%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           R+F+ ++  +S +W T+I    ++   + +A+ LF+ M ++G  + D++TF   L AC  
Sbjct: 225 RLFHGMKERDSISWTTMITGLIQN-GLEAEAMDLFRDMRQEGMAM-DQYTFGSVLTACGG 282

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L A  +GK+ H  I + G   +V++ ++L+  Y  C  +  A  VF  M  +++VSW  M
Sbjct: 283 LRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAM 342

Query: 208 IDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +  + Q G  + A+++F  MQ    EPD +T  S+ S+CA LA+L  G   H   L    
Sbjct: 343 LVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVS-- 400

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L++ + V+N+LI +Y KCGS++ + Q+F+ M  RD  SW +++ G+A  G+A   +  
Sbjct: 401 -GLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDL 459

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+R++V+    P+++TF+ VLSAC+  G+V  G+ YF+ M+ ++ I P  +HY C++DL 
Sbjct: 460 FERMLVQ-GLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLF 518

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG ++EA + ++ MP  PD++ W +LL +C + + +  + +  A+ ++E +    +G 
Sbjct: 519 GRAGRLEEAKNFINKMPFSPDSIGWATLLSSC-RLYGNEEIGKWAAESLLELDPQNPAG- 576

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS +YA+  +W++V  +R+ M +KG  KEPG S I+     + F A D S P + QI
Sbjct: 577 YILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQI 636

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L+ ++ K+   GY PD S + + D  D  K   L  HSE+LAIA G+L +  G+PIR
Sbjct: 637 YAELEKLNHKMIEEGYVPDAS-SVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIR 695

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCH  TK IS+I   EI+VRD  RFH FKDG+CSC D+W
Sbjct: 696 VVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 196/439 (44%), Gaps = 72/439 (16%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTW 101
           E ++ +Q K++H   +++      +T L  + I  ++   ++ YA  VF ++  PNSF+W
Sbjct: 17  ETRNQTQAKKLHCLIIKSL--TNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 102 NTLIRACARSVDAKP------------------------------QAIVLFQRMIEQGNV 131
           NT++ A ++S D                                 +A+  +  M++ G +
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             ++ TF   L   +       G+Q H  I K G  + V++ +SL+  YA  G + +A++
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 192 VFDNMLERSLV-------------------------------SWNVMIDAFVQFGEFDSA 220
           VFD + ER++V                               SW  MI   +Q G    A
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 221 LKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC-DHSLVTDVLVNNS 278
           + LFR M Q     D YTF S+ +AC GL  L  G   H  I+R   +H    +V V ++
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNH----NVFVGSA 310

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+DMYCKC S+  A  VF+ M  +++ SW ++++G+  +G +E A++ F  +       P
Sbjct: 311 LVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDM-QRNGIEP 369

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           +  T   V+S+C +   + EG   F        +   +     L+ L  + G+I+++  L
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQL 428

Query: 399 VSNMPMKPDAVIWRSLLDA 417
              M  + D V W +L+  
Sbjct: 429 FDEMSFR-DEVSWTALVSG 446



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 152/326 (46%), Gaps = 14/326 (4%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M   ++Q G    +  +  +F + R EG   +  +  S LT C  +  L   K+IH   +
Sbjct: 241 MITGLIQNGL---EAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLII 297

Query: 58  RTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ 117
           R+     H   +  + +  +     + YA  VF ++ N N  +W  ++    ++     +
Sbjct: 298 RSGY--NHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQN-GFSEE 354

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+ +F  M   G + PD  T    + +CA L +  +G Q H      GL+S + ++N+LI
Sbjct: 355 AVRVFCDMQRNG-IEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALI 413

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236
             Y  CG ++ +N++FD M  R  VSW  ++  + QFG+ +  + LF RM +   +PD  
Sbjct: 414 TLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAV 473

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           TF ++ SAC+    +  G      +L+  DH ++        +ID++ + G L+ A+   
Sbjct: 474 TFIAVLSACSRAGLVERGQQYFESMLK--DHGIIPFSDHYTCMIDLFGRAGRLEEAKNFI 531

Query: 297 ESMP-KRDLTSWNSIILGFALHGRAE 321
             MP   D   W +++    L+G  E
Sbjct: 532 NKMPFSPDSIGWATLLSSCRLYGNEE 557



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 63/341 (18%)

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K C      +Q K+ H  I K     + ++ N+LI+ Y+  G++  A  VFD M + +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA--CAG------------- 247
           SWN M+ A+ + G+  +  ++F    I+   DG ++ S+ S   C G             
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIF---SIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 248 ---------------------LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                                   + LG   H  I++         V V +SL+DMY K 
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVK---FGFGAYVFVGSSLVDMYAKM 186

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G + +A QVF+ + +R++  +N++I G    G  + + + F  +        +SI++  +
Sbjct: 187 GLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK-----ERDSISWTTM 241

Query: 347 LSACNHRGMVSEGRDYFDVM------INEYNITPVLEHYGCLVDLLARAGNIDEALH-LV 399
           ++     G+ +E  D F  M      +++Y    VL   G L     RA    + +H L+
Sbjct: 242 ITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGL-----RALKEGKEIHTLI 296

Query: 400 SNMPMKPDAVIWRSLLDACCK----KHASVVLSEEVAKQVI 436
                  +  +  +L+D  CK    ++A  V      K V+
Sbjct: 297 IRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVV 337


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 329/586 (56%), Gaps = 17/586 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
            +L ++ +  S+   K+IH   +R         +++ + I+  +     +DYA R+F  +
Sbjct: 225 GVLPAVAQVNSLRHGKEIHGFCVRRGFVGD---VVVGTGILDVYGKCQCIDYARRIFDMM 281

Query: 94  E-NPNSFTWNTLIRACARSVDAKPQAIVLFQR--MIEQGNVLPDKHTFPFALKACAYLFA 150
               N  TW+ ++ A     D   +A+ LF +  M++   ++    T    ++ CA L  
Sbjct: 282 GIVKNEVTWSAMVGAYV-VCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTD 340

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            S G   H +  K G V D+ + N+L+  YA CG ++ A + F+ M  R  VS+  +I  
Sbjct: 341 LSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG 400

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +VQ G  +  L++F  MQ+    P+  T  S+  ACA LA L  G  +H Y +  C    
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAII-C--GF 457

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D ++ N+LIDMY KCG +D AR+VF+ M KR + SWN++I+ + +HG    AL  FD 
Sbjct: 458 TADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDN 517

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +   E   P+ +TF+ ++SAC+H G+V+EG+ +F+ M  ++ I P +EHY C+VDLL+RA
Sbjct: 518 MQ-SEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRA 576

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G   E    +  MP++PD  +W +LL AC + + +V L E V+K+ I+  G   +G +VL
Sbjct: 577 GLFKEVHSFIEKMPLEPDVRVWGALLSAC-RVYKNVELGEGVSKK-IQKLGPESTGNFVL 634

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD-TSHPQTKQIYG 508
           LS +Y++  RW+D   VR    ++G  K PGCS IEI G+ H F  G   SHPQ  QI  
Sbjct: 635 LSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISN 694

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            LD +  ++K  GY  + S     D  ++ K+  L  HSE+LAIA GIL+L P   I V 
Sbjct: 695 KLDELLVEMKRLGYQAE-SSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVT 753

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH   K IS +   +I VRD +RFHHFKDG C+C D+W
Sbjct: 754 KNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 210/405 (51%), Gaps = 20/405 (4%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI-----YSRIIH-FA 78
           R   S    + LL S  + KS+ + K IH Q L   L + H+T L      + +++  + 
Sbjct: 4   RTRLSLEYCTVLLESCIQSKSLFRGKLIH-QHLLKCLHRTHETNLTNFDVPFEKLVDLYI 62

Query: 79  SFADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           + ++L  A  VF ++ +   N   WN LIRA A +     +AI L+ +M+  G + P++ 
Sbjct: 63  ACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWN-GPYEEAIDLYYKMLGYG-ITPNRF 120

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TFPF LKAC+ L   S+G++ H  I +  L S+VY++ +L+ FYA CG LD A +VFD M
Sbjct: 121 TFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM 180

Query: 197 LERSLVSWNVMIDAF-VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM 255
            +R +V+WN MI  F +  G +D   +L  +MQ    P+  T   +  A A + +L  G 
Sbjct: 181 HKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGK 240

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGF 314
             H + +R      V DV+V   ++D+Y KC  +D AR++F+ M   ++  +W++++  +
Sbjct: 241 EIHGFCVR---RGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAY 297

Query: 315 ALHGRAEAALKYFDRLVV--EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            +      AL+ F +L++  ++    +++T   V+  C +   +S G       I    +
Sbjct: 298 VVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFV 357

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             ++     L+ + A+ G I+ A+   + M ++ DAV + +++  
Sbjct: 358 LDLMVG-NTLLSMYAKCGIINGAMRFFNEMDLR-DAVSFTAIISG 400


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 339/601 (56%), Gaps = 21/601 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F+++R+  +    S+  + +  C ++ QL   +Q+H+  L+          ++ + +  
Sbjct: 293 LFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGN--VMTALMDA 350

Query: 77  FASFADLDYAFRVFYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
           ++    L  A  +F  +  + N  +W  +I  C ++ D  P A  LF RM E G V P+ 
Sbjct: 351 YSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDV-PLAAALFSRMREDG-VAPND 408

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+   L A       S   Q HA + K        +  +L+  Y+   + + A  +F  
Sbjct: 409 FTYSTILTASVA----SLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKM 464

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAG-LATLSL 253
           + ++ +VSW+ M+  + Q G+ D A  +F +M +   +P+ +T  S+  ACA   A + L
Sbjct: 465 IDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDL 524

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   HA  ++H  H  +    V+++L+ MY + GS++ A+ +FE    RDL SWNS++ G
Sbjct: 525 GRQFHAISIKHRCHDALC---VSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSG 581

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A HG ++ AL  F R +  E    + +TF+ V+  C H G+V EG+ YFD M  +Y IT
Sbjct: 582 YAQHGYSQKALDVF-RQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGIT 640

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P +EHY C+VDL +RAG +DEA+ L+  M      ++WR+LL AC K H +V L +  A+
Sbjct: 641 PTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGAC-KVHKNVELGKLAAE 699

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           +++  E    S  YVLLS +Y++A +W +   VRKLM  K V KE GCS I+I    H F
Sbjct: 700 KLLSLEP-FDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSF 758

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
            A D SHP ++QIY  L  +  KLK  GY PD S  A+ +  ++ K++ L +HSERLA+A
Sbjct: 759 IASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTS-FALHEVAEEQKEAMLAMHSERLALA 817

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            G++   PG P+ +FKNLRVC DCH V K++S+I + EI++RD +RFHHF  G CSC D+
Sbjct: 818 FGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDF 877

Query: 614 W 614
           W
Sbjct: 878 W 878



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 161/384 (41%), Gaps = 57/384 (14%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF  +   N  TW +L+    +   A    + LF RM  +G V P+  TF   L   A 
Sbjct: 160 KVFEAMPKRNVVTWTSLLTGYIQD-GALSDVMELFFRMRAEG-VWPNSVTFASVLSVVAS 217

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                 G++ HA   K G  S V++ NSL++ YA CG ++ A  VF  M  R +VSWN +
Sbjct: 218 QGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTL 277

Query: 208 IDAFVQFGEFDSALKLFR--RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           +   V  G    AL+LF   R  I       T+ ++   CA +  L L    H+ +L+  
Sbjct: 278 MAGLVLNGHDLEALQLFHDSRSSITMLTQS-TYATVIKLCANIKQLGLARQLHSSVLKRG 336

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAAL 324
            HS      V  +L+D Y K G L  A  +F  M   +++ SW ++I G   +G    A 
Sbjct: 337 FHSYGN---VMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAA 393

Query: 325 KYFDRLVVEESFSPNSITFVGVLSA----------------------------------- 349
             F R+  E+  +PN  T+  +L+A                                   
Sbjct: 394 ALFSRM-REDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKL 452

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM---KP 406
           CN      E    F  MI++ ++      +  ++   A+AG+ D A ++   M M   KP
Sbjct: 453 CN----TEEALSIFK-MIDQKDVVS----WSAMLTCYAQAGDSDGATNIFIKMTMHGLKP 503

Query: 407 DAVIWRSLLDACCKKHASVVLSEE 430
           +     S++DAC    A V L  +
Sbjct: 504 NEFTISSVIDACASPTAGVDLGRQ 527



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 129/283 (45%), Gaps = 15/283 (5%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           LK C  +     GKQ H    + G    DV +  SL+  Y     +    KVF+ M +R+
Sbjct: 110 LKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRN 169

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +V+W  ++  ++Q G     ++LF RM+     P+  TF S+ S  A    + LG   HA
Sbjct: 170 VVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHA 229

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
             ++       + V V NSL++MY KCG ++ AR VF  M  RD+ SWN+++ G  L+G 
Sbjct: 230 QSVK---FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGH 286

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL+ F       +    S T+  V+  C +   +   R     ++           Y
Sbjct: 287 DLEALQLFHDSRSSITMLTQS-TYATVIKLCANIKQLGLARQLHSSVLKRG-----FHSY 340

Query: 380 G----CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G     L+D  ++AG +  AL +   M    + V W ++++ C
Sbjct: 341 GNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGC 383



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 5/181 (2%)

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
           G     +   C  +    LG   H   +R C H    DV V  SL+DMY K  S+   R+
Sbjct: 103 GGALVGVLKVCGSVPDRVLGKQLHGLCIR-CGHDR-GDVGVGTSLVDMYMKWHSVVDGRK 160

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VFE+MPKR++ +W S++ G+   G     ++ F R+  E  + PNS+TF  VLS    +G
Sbjct: 161 VFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW-PNSVTFASVLSVVASQG 219

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           MV  GR      + ++     +     L+++ A+ G ++EA  +   M  + D V W +L
Sbjct: 220 MVDLGRRVHAQSV-KFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTL 277

Query: 415 L 415
           +
Sbjct: 278 M 278


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 330/577 (57%), Gaps = 18/577 (3%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S+S   ++H   L     Q     L    I  ++    +DYA +VF +      + WN L
Sbjct: 92  SLSDALRVHRHILDNGSDQD--PFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNAL 149

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA----YLFAFSQGKQAHAH 160
            RA   +   + + + L+ +M   G V  D+ T+ + LKAC      +    +GK+ HAH
Sbjct: 150 FRALTLAGHGE-EVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTVNHLMKGKEIHAH 207

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           + +RG  S VYI  +L+  YA  G +D A+ VF  M  R++VSW+ MI  + + G+   A
Sbjct: 208 LTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 221 LKLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           L+ FR M    +   P+  T  S+  ACA LA L  G   H YILR    S++    V +
Sbjct: 268 LRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILP---VIS 324

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+ MY +CG L++ ++VF+ M  RD+ SWNS+I  + +HG  + A++ F+ ++   + S
Sbjct: 325 ALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGA-S 383

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P  +TFV VL AC+H G+V EG+  F+ M  ++ I P +EHY C+VDLL RA  +DEA  
Sbjct: 384 PTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAK 443

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           +V +M  +P   +W SLL +C + H +V L+E  ++++   E    +G YVLL+ +YA A
Sbjct: 444 MVQDMRTEPGPKVWGSLLGSC-RIHGNVELAERASRRLFALEPK-NAGNYVLLADIYAEA 501

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
           + W++V  V+KL+  +G+ K PG   +E+    + F + D  +P  +QI+ FL  + E +
Sbjct: 502 QMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDM 561

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           K +GY P  ++  + +   + K+  +  HSE+LA+A G++N   G PIR+ KNLR+C+DC
Sbjct: 562 KEKGYIPQ-TKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDC 620

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H  TK IS+    EI+VRD  RFH FK+G CSC DYW
Sbjct: 621 HLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 17/322 (5%)

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N LI++  +    K QAI    R++ Q +  P + T+   +  C +  + S   + H HI
Sbjct: 50  NQLIQSLCKEGKLK-QAI----RVLSQESS-PSQQTYELLILCCGHRSSLSDALRVHRHI 103

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
              G   D ++   LI  Y+  G +D A KVFD   +R++  WN +  A    G  +  L
Sbjct: 104 LDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163

Query: 222 KLFRRM-QILFEPDGYTFQSITSACAG----LATLSLGMWAHAYILRHCDHSLVTDVLVN 276
            L+ +M +I  E D +T+  +  AC      +  L  G   HA++ R       + V + 
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTR---RGYSSHVYIM 220

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE-ES 335
            +L+DMY + G +D A  VF  MP R++ SW+++I  +A +G+A  AL+ F  ++ E + 
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKD 280

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            SPNS+T V VL AC     + +G+     ++    +  +L     LV +  R G ++  
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGKLEVG 339

Query: 396 LHLVSNMPMKPDAVIWRSLLDA 417
             +   M  + D V W SL+ +
Sbjct: 340 QRVFDRMHDR-DVVSWNSLISS 360


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 328/596 (55%), Gaps = 42/596 (7%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR-- 106
           KQIH Q ++         LL+ S +++ +A+   +  A +VFY +++ N+  +N+L+   
Sbjct: 159 KQIHGQVIKLGF---ESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGL 215

Query: 107 -ACARSVDA--------------------------KPQAIVLFQRMIEQGNVLPDKHTFP 139
            AC    DA                            +AI  F+ M  QG  + D++ F 
Sbjct: 216 LACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKM-DQYPFG 274

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
             L AC  L A ++GKQ HA I +      +Y+ ++LI  Y  C  L  A  VFD M ++
Sbjct: 275 SVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK 334

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           ++VSW  M+  + Q G  + A+K+F  MQ    +PD YT     SACA +++L  G   H
Sbjct: 335 NVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFH 394

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
               +     L+  V V+NSL+ +Y KCG +D + ++F  M  RD  SW +++  +A  G
Sbjct: 395 G---KAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
           RA   ++ FD++V +    P+ +T  GV+SAC+  G+V +G+ YF +M +EY I P + H
Sbjct: 452 RAVETIQLFDKMV-QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGH 510

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           Y C++DL +R+G ++EA+  ++ MP  PDA+ W +LL AC +   ++ + +  A+ +IE 
Sbjct: 511 YSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSAC-RNKGNLEIGKWAAESLIEL 569

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           +    +G Y LLS +YAS  +W+ V  +R+ M +K V KEPG S I+  G  H F A D 
Sbjct: 570 DPHHPAG-YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDE 628

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
           S P   QIY  L+ ++ K+   GY PD S     D  +  K   L  HSERLAIA G++ 
Sbjct: 629 SSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHH-DVEEAVKVKMLNYHSERLAIAFGLIF 687

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +  G PIRV KNLRVC DCH  TK IS +   EI+VRD  RFH FKDG+CSC D+W
Sbjct: 688 VPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 229/518 (44%), Gaps = 105/518 (20%)

Query: 49  LKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRA 107
           +K IH   +R ALP  +    +Y+ I+H +A      YA RVF +I  PN F+WN L+ A
Sbjct: 25  VKMIHGNIIR-ALP--YPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLA 81

Query: 108 CAR---------SVDAKPQ---------------------AIVLFQRMIEQGNVLPDKHT 137
            ++         + +  P                      A+  +  M+   +    + T
Sbjct: 82  YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
               LK  +     S GKQ H  + K G  S + + + L++ YA+ G +  A KVF  + 
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI---------------------------- 229
           +R+ V +N ++   +  G  + AL+LFR M+                             
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM 261

Query: 230 ---LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC--DHSLVTDVLVNNSLIDMYC 284
                + D Y F S+  AC GL  ++ G   HA I+R    DH     + V ++LIDMYC
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH-----IYVGSALIDMYC 316

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNSITF 343
           KC  L  A+ VF+ M ++++ SW ++++G+   GRAE A+K F  L ++ S   P+  T 
Sbjct: 317 KCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF--LDMQRSGIDPDHYTL 374

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARAGNIDEALHLV 399
              +SAC +   + EG  +     +   IT  L HY      LV L  + G+ID++  L 
Sbjct: 375 GQAISACANVSSLEEGSQF-----HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429

Query: 400 SNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
           + M ++ DAV W +++ A     +   ++ L +++ +  ++ +G   +GV    SR    
Sbjct: 430 NEMNVR-DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSR---- 484

Query: 457 ARRWNDVGLVR------KLMTDK-GVTKEPGCSSIEID 487
                  GLV       KLMT + G+    G  S  ID
Sbjct: 485 ------AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMID 516



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 40/327 (12%)

Query: 122 FQRMIEQGNV---LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           + +MI  GN+   LP   TF +      + +A  +       +F R    +++  N+L+ 
Sbjct: 24  YVKMI-HGNIIRALPYPETFLY--NNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLL 80

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD--GY 236
            Y+  G +      F+ + +R  V+WNV+I+ +   G   +A+K +  M   F  +    
Sbjct: 81  AYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRV 140

Query: 237 TFQSITSACAGLATLSLGMWAHAYILR----------------HCDHSLVTD-------- 272
           T  ++    +    +SLG   H  +++                + +   ++D        
Sbjct: 141 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGL 200

Query: 273 ----VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
                ++ NSL+     CG ++ A Q+F  M K D  SW ++I G A +G A+ A++ F 
Sbjct: 201 DDRNTVMYNSLMGGLLACGMIEDALQLFRGMEK-DSVSWAAMIKGLAQNGLAKEAIECFR 259

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            + V +    +   F  VL AC   G ++EG+     +I   N    +     L+D+  +
Sbjct: 260 EMKV-QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCK 317

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
              +  A  +   M  K + V W +++
Sbjct: 318 CKCLHYAKTVFDRMKQK-NVVSWTAMV 343



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 139/339 (41%), Gaps = 58/339 (17%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIH 76
           IF + +  G   +H +L  +++ C ++S L+   Q H +A+ + L   H   +  S +  
Sbjct: 358 IFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLI--HYVTVSNSLVTL 415

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    D+D + R+F ++   ++ +W  ++ A A+   A  + I LF +M++ G + PD  
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRA-VETIQLFDKMVQHG-LKPDGV 473

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    + AC+      +G++     + + + S+  I  S+ H+  SC             
Sbjct: 474 TLTGVISACSRAGLVEKGQR-----YFKLMTSEYGIVPSIGHY--SC------------- 513

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
                     MID F + G  + A++    M   F PD   + ++ SAC     L +G W
Sbjct: 514 ----------MIDLFSRSGRLEEAMRFINGMP--FPPDAIGWTTLLSACRNKGNLEIGKW 561

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM--------PKRDLTSWN 308
           A   ++    H      L+++    +Y   G  D   Q+   M        P +    W 
Sbjct: 562 AAESLIELDPHHPAGYTLLSS----IYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWK 617

Query: 309 SIILGFALHGRAE-------AALKYFDRLVVEESFSPNS 340
             +  F+    +        A L+  +  +++  + P++
Sbjct: 618 GKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDT 656


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/673 (35%), Positives = 345/673 (51%), Gaps = 85/673 (12%)

Query: 16  HSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYS 72
           H+ S F+     G   ++  L S++  C  +S LK   Q+H  A  +          + S
Sbjct: 97  HALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDS---FVQS 153

Query: 73  RIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VD-------------AKP 116
            ++H +     +  A RVF ++  P+  +W+ L+ A AR   VD              +P
Sbjct: 154 SLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQP 213

Query: 117 -------------------QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
                              +A+++F  M  +G   PD  T    L A   L     G   
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG-FEPDGTTISSVLPAVGDLEDLVMGILI 272

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--------------------- 196
           H ++ K+GLVSD  ++++LI  Y  C      ++VFD M                     
Sbjct: 273 HGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQV 332

Query: 197 --------------LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
                         +E ++VSW  MI    Q G    AL+LFR MQI   +P+  T   +
Sbjct: 333 ESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCL 392

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             AC  +A L  G  AH + LR     + TDV V ++LIDMY KCG +  +R  F+ +P 
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRR---GISTDVYVGSALIDMYAKCGRIQASRICFDGIPT 449

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           ++L  WN++I G+A+HG+A+ A++ FD L+      P+ I+F  VLSAC+  G+  EG  
Sbjct: 450 KNLVCWNAVIAGYAMHGKAKEAMEIFD-LMQRSGQKPDIISFTCVLSACSQSGLTEEGSY 508

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           YF+ M ++Y I   +EHY C+V LL+RAG +++A  ++  MP+ PDA +W +LL +C + 
Sbjct: 509 YFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSC-RV 567

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +V L E  A+++ E E     G Y+LLS +YAS   WN+V  VR +M +KG+ K PGC
Sbjct: 568 HNNVSLGEVAAEKLFELEPSN-PGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGC 626

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S IE+    H   AGD SHPQ  QI   LD +  ++K  GY P+ +   + D  +  K+ 
Sbjct: 627 SWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEIN-FVLQDVEEQDKEQ 685

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
            L  HSE+LA+  G+LN  PG P++V KNLR+C DCH V K IS     EI VRD  RFH
Sbjct: 686 ILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFH 745

Query: 602 HFKDGSCSCMDYW 614
           HFK+G+CSC DYW
Sbjct: 746 HFKEGACSCGDYW 758



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 187/392 (47%), Gaps = 54/392 (13%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS---FADLDYAFRVFYQIENPNSFTW 101
           S+SQ +Q HA  L+T L   + T L    + H+A+   FAD   A  V   +  PN F++
Sbjct: 28  SLSQTRQAHAHILKTGL--FNDTHLATKLLSHYANNMCFAD---ATLVLDLVPEPNVFSF 82

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           +TLI A ++       A+  F +M+ +G ++PD    P A+KACA L A    +Q H   
Sbjct: 83  STLIYAFSK-FHQFHHALSTFSQMLTRG-LMPDNRVLPSAVKACAGLSALKPARQVHGIA 140

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
              G  SD ++ +SL+H Y  C  +  A++VFD M E  +VSW+ ++ A+ + G  D A 
Sbjct: 141 SVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200

Query: 222 KLFRRM---------------------------QIL---------FEPDGYTFQSITSAC 245
           +LF  M                            +L         FEPDG T  S+  A 
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
             L  L +G+  H Y+++     LV+D  V+++LIDMY KC       QVF+ M   D+ 
Sbjct: 261 GDLEDLVMGILIHGYVIK---QGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVG 317

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           S N+ I G + +G+ E++L+ F R + ++    N +++  +++ C+  G   E  + F  
Sbjct: 318 SCNAFIFGLSRNGQVESSLRLF-RQLKDQGMELNVVSWTSMIACCSQNGRDIEALELF-- 374

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
              E  I  V  +   +  LL   GNI   +H
Sbjct: 375 --REMQIAGVKPNSVTIPCLLPACGNIAALMH 404


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/618 (35%), Positives = 332/618 (53%), Gaps = 50/618 (8%)

Query: 36  LLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           LLS    C S+  +   K++H  A+R         LL  + I  +      + A  VF  
Sbjct: 81  LLSVAKACASLRDVMNAKRVHEDAIRFGFCSD--VLLGNALIDMYGKCRCSEGARLVFEG 138

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  +W ++  +C  +     +A+  F++M   G   P+  T    L AC  L    
Sbjct: 139 MPFRDVISWTSMA-SCYVNCGLLREALGAFRKMGLNGE-RPNSVTVSSILPACTDLKDLK 196

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF- 211
            G++ H  + + G+  +V+++++L++ YASC  +  A  VFD+M  R  VSWNV+I A+ 
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 212 ----------------------------------VQFGEFDSALKLFRRMQ-ILFEPDGY 236
                                             +Q G  + AL++  RMQ   F+P+  
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T  S+  AC  L +L  G   H YI RH       D+    +L+ MY KCG L+++R+VF
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHW---FFQDLTTTTALVFMYAKCGDLELSRRVF 373

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
             M KRD  SWN++I+  ++HG  E AL  F R +V+    PNS+TF GVLS C+H  +V
Sbjct: 374 SMMTKRDTVSWNTMIIATSMHGNGEEALLLF-REMVDSGVRPNSVTFTGVLSGCSHSRLV 432

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            EG   FD M  ++++ P  +H+ C+VD+L+RAG ++EA   +  MP++P A  W +LL 
Sbjct: 433 DEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLG 492

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
            C + + +V L    A ++ E E     G YVLLS +  SA+ W++    RKLM D+GVT
Sbjct: 493 GC-RVYKNVELGRIAANRLFEIESD-NPGNYVLLSNILVSAKLWSEASETRKLMRDRGVT 550

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PGCS I++    H F  GD S+ Q+ +IY FLD + EK++  GY P+ +   + D   
Sbjct: 551 KNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPN-TDFVLQDVDQ 609

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
           + K+  L  HSE+LA+A G+LNL     IRVFKNLR+C DCH   K +++I  V+IIVRD
Sbjct: 610 EEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRD 669

Query: 597 RARFHHFKDGSCSCMDYW 614
             RFHHF+DG CSC D+W
Sbjct: 670 SLRFHHFRDGLCSCQDFW 687



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 168/394 (42%), Gaps = 41/394 (10%)

Query: 59  TALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118
           + LP      L    I  +++  DL  A  +F +I  P+  TW  LI A  +      +A
Sbjct: 3   SKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKH-GRSLEA 61

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           I  +     +  V PDK       KACA L      K+ H    + G  SDV + N+LI 
Sbjct: 62  IQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALID 121

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYT 237
            Y  C   + A  VF+ M  R ++SW  M   +V  G    AL  FR+M +  E P+  T
Sbjct: 122 MYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVT 181

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             SI  AC  L  L  G   H +++R   + +  +V V+++L++MY  C S+  A+ VF+
Sbjct: 182 VSSILPACTDLKDLKSGREVHGFVVR---NGMGGNVFVSSALVNMYASCLSIRQAQLVFD 238

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE------------------------ 333
           SM +RD  SWN +I  + L+   E  L  F R++ E                        
Sbjct: 239 SMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEK 298

Query: 334 ----------ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
                       F PN IT   VL AC +   +  G+     +   +     L     LV
Sbjct: 299 ALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQD-LTTTTALV 357

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            + A+ G+++ +  + S M  K D V W +++ A
Sbjct: 358 FMYAKCGDLELSRRVFS-MMTKRDTVSWNTMIIA 390



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 151/353 (42%), Gaps = 46/353 (13%)

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR--RMQILFEP 233
            I  Y++ G L  A  +FD + +  L +W ++I A  + G    A++ +   R +   EP
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D     S+  ACA L  +      H   +R       +DVL+ N+LIDMY KC   + AR
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIR---FGFCSDVLLGNALIDMYGKCRCSEGAR 133

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            VFE MP RD+ SW S+   +   G    AL  F ++ +     PNS+T   +L AC   
Sbjct: 134 LVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGE-RPNSVTVSSILPACTDL 192

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
             +  GR+    ++       V      LV++ A   +I +A  LV +   + D V W  
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVS-SALVNMYASCLSIRQA-QLVFDSMSRRDTVSWNV 250

Query: 414 LLDAC-----CKKHASV---VLSEEVA------KQVIES--EGGICSGVYVLLSRVYASA 457
           L+ A      C+K  SV   ++SE V         VI    + G       +LSR+  S 
Sbjct: 251 LITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSG 310

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
            + N + +   L         P C+++E             S    KQI+G++
Sbjct: 311 FKPNQITITSVL---------PACTNLE-------------SLRGGKQIHGYI 341


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/540 (39%), Positives = 320/540 (59%), Gaps = 11/540 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F +   L  A R+F  + + +  TWN +I    ++ +   +A+ LF R+ +Q  +  +  
Sbjct: 252 FGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQN-ENFGEAVRLFGRL-QQDGIKANDI 309

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L     L + ++GK  H  + + G   DV +  +L+  Y  C     A K+F +M
Sbjct: 310 TFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDM 369

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGM 255
             + +++W VM  A+ Q G    AL+LF+ MQ+    P   T  ++   CA LA L  G 
Sbjct: 370 GSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGR 429

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H++I+   ++    +++V  +LI+MY KCG +  AR VFE M KRD+  WNS++  +A
Sbjct: 430 QIHSHII---ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYA 486

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG  +  L+ F+++ ++     ++++FV VLSA +H G V++G  YF  M+ +++ITP 
Sbjct: 487 QHGYYDETLQLFNQMQLDGE-KADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPT 545

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMP-MKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            E YGC+VDLL RAG I EA+ +V  +    PD ++W +LL AC + H     ++  A+Q
Sbjct: 546 PELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGAC-RTHNKTDQAKAAAEQ 604

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           V+E +    SG YV+LS VYA+A  W+ V  +RKLM  +GV KEPG SSIEI    HEF 
Sbjct: 605 VLERDPS-HSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFL 663

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
            GD SHP+   IY  LD+++ ++++ GY PD ++  + D  D+ K+  L  HSERLAIA 
Sbjct: 664 EGDRSHPRRHPIYAELDVLNSEMRAAGYIPD-TKMILHDVEDERKEDMLFYHSERLAIAF 722

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G+++  PG P+RV KNLRVC DCH  TK IS++   EI+VRD  RFH+FKDG CSC DYW
Sbjct: 723 GLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 179/379 (47%), Gaps = 13/379 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           +LL   +  K++   +++H         Q +   L+   +I  +A    +  A +VF  +
Sbjct: 10  ALLQRCSSAKNVDHGRRVHWHVCDRGFEQNN---LVCGHLIQMYAQCGSVPEAQQVFEIL 66

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           E  + F W  +I    +  D   +A+ +F +M E+ +V+P K T+   L ACA   +   
Sbjct: 67  ERKDVFAWTRMIGIYCQQGDYD-RALGMFYQMQEE-DVMPTKVTYVAILNACASTESLKD 124

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G + H  I ++G   DV++  +LI+ Y  CG +  A   F  +  R +VSW  MI A VQ
Sbjct: 125 GMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQ 184

Query: 214 FGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +F  A  L+RRMQ+    P+  T  ++ +A      LS G + ++ +       + +D
Sbjct: 185 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLV---SSRVMESD 241

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V NS ++M+   G L  AR++FE M  RD+ +WN +I  +  +     A++ F RL  
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRL-Q 300

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           ++    N ITFV +L+       +++G+   + ++ E      +     L+ L  R    
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHE-LVKEAGYDRDVVVATALMSLYGRCEAP 359

Query: 393 DEALHLVSNMPMKPDAVIW 411
            +A  +  +M  K D + W
Sbjct: 360 GQAWKIFVDMGSK-DVITW 377



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 7/280 (2%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD   F   L+ C+       G++ H H+  RG   +  +   LI  YA CG +  A +V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           F+ +  + + +W  MI  + Q G++D AL +F +MQ     P   T+ +I +ACA   +L
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             GM  H  IL+        DV V  +LI+MY KCGS+  A   F+ +  RD+ SW ++I
Sbjct: 123 KDGMEIHGQILQ---QGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMI 179

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
                H +   A   + R+ + +   PN IT   V +A      +SEG+ +   +++   
Sbjct: 180 AACVQHDQFALARWLYRRMQL-DGVVPNKITLYTVFNAYGDPHYLSEGK-FIYSLVSSRV 237

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           +   +      +++   AG + +A  L  +M +  D V W
Sbjct: 238 MESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTW 276


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 340/576 (59%), Gaps = 22/576 (3%)

Query: 44  KSMSQLKQIHAQALRTA--LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN-PNSFT 100
           K MS  KQ+H Q ++         KT L+    + ++  +++D AF++F  +    N  +
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALM----VAYSKCSEIDDAFKLFCMMHGVQNVVS 363

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           W  +I    ++     +A+ LF +M  +G V P+  T+   L A A +       Q HA 
Sbjct: 364 WTAIISGYVQN-GRTDRAMNLFCQMRREG-VRPNHFTYSTILTANAAV----SPSQIHAL 417

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           + K    +   +  +L   Y+  G  + A K+F+ + E+ +V+W+ M+  + Q G+ + A
Sbjct: 418 VVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGA 477

Query: 221 LKLFRRM-QILFEPDGYTFQSITSACAG-LATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           +K+F ++ +   EP+ +TF S+ +ACA   A++  G   H+  ++         + V+++
Sbjct: 478 VKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS---GFSNALCVSSA 534

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+ MY K G+++ A +VF+    RDL SWNS+I G+A HG  + +LK F+ +   ++   
Sbjct: 535 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMR-SKNLEL 593

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + ITF+GV+SAC H G+V+EG+ YFD+M+ +Y+I P +EHY C+VDL +RAG +++A+ L
Sbjct: 594 DGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDL 653

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           ++ MP    A IWR+LL A C+ H +V L E  A+++I  +    S  YVLLS +YA+A 
Sbjct: 654 INKMPFPAGATIWRTLL-AACRVHLNVQLGELAAEKLISLQPQD-SAAYVLLSNIYATAG 711

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
            W +   VRKLM  K V KE G S IE+      F AGD SHPQ+ +IY  L+ +  +LK
Sbjct: 712 NWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLK 771

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             GY PD ++  + D  ++ K+  L  HSERLAIA G++   PG PI++ KNLRVC DCH
Sbjct: 772 DAGYYPD-TKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCH 830

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            V KLIS+I   +I+VRD  RFHHFK GSCSC DYW
Sbjct: 831 TVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 208/423 (49%), Gaps = 28/423 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-DYAFRVFYQ 92
           +++L  L    ++ +  Q+H   +++ L     T+ + + +++  S + +   A  VF  
Sbjct: 197 AAVLGGLAADGAVEKGVQVHTMVIKSGLDS---TIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 93  IENPNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +EN N+ +WN++I       +D   +A  LF RM  +G  L  +  F   +K CA +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDL--EAFELFYRMRLEGVKLT-QTIFATVIKLCANIKEM 310

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDA 210
           S  KQ H  + K G   D+ I  +L+  Y+ C  +D A K+F  M   +++VSW  +I  
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +VQ G  D A+ LF +M+     P+ +T+ +I +A A ++   +    HA +++    + 
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQI----HALVVK---TNY 423

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
                V  +L D Y K G  + A ++FE + ++D+ +W++++ G+A  G  E A+K F +
Sbjct: 424 ENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQ 483

Query: 330 LVVEESFSPNSITFVGVLSACNH-RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           L  +E   PN  TF  VL+AC      V +G+ +    I     +  L     LV + A+
Sbjct: 484 L-AKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAK 541

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLD-----ACCKKHASVVLSEEVAKQVIESEGGIC 443
            GNI+ A + V    +  D V W S++       C KK  S+ + EE+  + +E +G   
Sbjct: 542 RGNIESA-NEVFKRQVDRDLVSWNSMISGYAQHGCGKK--SLKIFEEMRSKNLELDGITF 598

Query: 444 SGV 446
            GV
Sbjct: 599 IGV 601



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 29/317 (9%)

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
           D   +A+ LF  +   G+   D  +    LK C  LF    GKQ H    K G V DV +
Sbjct: 71  DQNKEALNLFLGLRRSGSP-TDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSV 129

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
             SL+  Y     ++   +VFD M  +++VSW  ++  + Q G  + ALKLF +MQ+   
Sbjct: 130 GTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI 189

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           +P+ +TF ++    A    +  G+  H  +++     L + + V NS+++MY K   +  
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK---SGLDSTIFVGNSMVNMYSKSLMVSD 246

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           A+ VF+SM  R+  SWNS+I GF  +G    A + F R+ +E      +I F  V+  C 
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTI-FATVIKLCA 305

Query: 352 -----------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
                      H  ++  G D FD+ I     T ++  Y       ++   ID+A  L  
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSD-FDLNIK----TALMVAY-------SKCSEIDDAFKLFC 353

Query: 401 NMPMKPDAVIWRSLLDA 417
            M    + V W +++  
Sbjct: 354 MMHGVQNVVSWTAIISG 370


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 334/580 (57%), Gaps = 18/580 (3%)

Query: 40  LTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           L  C ++  L   +++H Q  R     +    +    +  +A   ++  A  VF ++ + 
Sbjct: 180 LKACSALPALEMGRRVHGQIFRHGF--ESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237

Query: 97  NSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
              +W ++I   A+  + +P +A+ +F  M  + NV PD       L+A   +     GK
Sbjct: 238 TIVSWTSIISGYAQ--NGQPIEALRIFSEM-RKTNVRPDWIALVSVLRAYTDVEDLEHGK 294

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H  + K GL  +  +  SL   YA CGH+ +A   F+ +   SL+ WN MI  +V+ G
Sbjct: 295 SIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNG 354

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + A++LFR M+     PD  T  S  +ACA + +L L  W   YI          DV+
Sbjct: 355 YAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMS---EFRNDVI 411

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           VN SLID Y KCGS+D+AR VF+ +P +D+  W+++++G+ LHG+   ++  F  +  + 
Sbjct: 412 VNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMR-QA 470

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             SPN +TFVG+L+AC + G+V EG D F  M  +Y I P  +HY C+VDLL RAG++D 
Sbjct: 471 GVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDR 529

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A + V NMP++P   +W +LL AC K H  V L E  A+++  S     +G YV LS +Y
Sbjct: 530 AYNFVMNMPIEPGVSVWGALLSAC-KIHRHVTLGEYAAERLF-SLDPYNTGHYVQLSNLY 587

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           AS+  W+ V  VR LM +KG+TK  G S IEI+G    F AGD +HP++K+I+  ++ ++
Sbjct: 588 ASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLE 647

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +LK  G+ P ++++ + D   +  + +L  HSERLAIA G+++  PG  +R+ KNLR C
Sbjct: 648 RRLKEAGFVP-HTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRAC 706

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +CH   KLIS++ + EI+VRD  RFHHFKDG+CSC DYW
Sbjct: 707 DNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 202/402 (50%), Gaps = 20/402 (4%)

Query: 21  FNNNR---NEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           FNNN+   NE +F       S + +    + L QI+A+ L T L  Q+   LI   +   
Sbjct: 60  FNNNKDDCNESTFKPDKFYASLIDDSIHKTHLNQIYAKLLVTGL--QYGGFLIAKLVNKA 117

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           ++  ++  A ++F +  +P+ F WN ++R  +R       AI ++ RM +   V PD  +
Sbjct: 118 SNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRH-GFFGHAIEMYARM-QVACVSPDGFS 175

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           FP  LKAC+ L A   G++ H  IF+ G  SDV++ N L+  YA CG +  AN VF  ++
Sbjct: 176 FPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLV 235

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           +R++VSW  +I  + Q G+   AL++F  M+     PD     S+  A   +  L  G  
Sbjct: 236 DRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295

Query: 257 AHAYILR---HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
            H  +++    C+  L+       SL  +Y KCG + +AR  F  +    L  WN++I G
Sbjct: 296 IHGCVIKMGLECEFDLLI------SLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISG 349

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +  +G AE A++ F RL+  ++  P+SIT    ++AC   G +   R + D  I+     
Sbjct: 350 YVKNGYAEEAIELF-RLMKSKNIRPDSITVTSSIAACAQIGSLELAR-WMDEYISMSEFR 407

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +     L+D  A+ G++D A  +   +P K D V+W +++
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-DVVVWSAMM 448


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 334/610 (54%), Gaps = 42/610 (6%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-DYAFRVFYQIENPNS 98
           L  C S++Q K++HAQ     L Q    L    R++       L  Y   +F Q+  PN 
Sbjct: 15  LERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNP 74

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
           F W  LIRA A       QA+  +  M ++  V P   TF     ACA +   + G Q H
Sbjct: 75  FAWTALIRAYALR-GPLSQALSFYSSMRKR-RVSPISFTFSALFSACAAVRHSALGAQLH 132

Query: 159 AH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE- 216
           A  +   G  SD+Y+NN++I  Y  CG L  A  VFD M ER ++SW  +I A+ + G+ 
Sbjct: 133 AQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDM 192

Query: 217 ------FDS------------------------ALKLFRRMQIL-FEPDGYTFQSITSAC 245
                 FD                         AL++FRR++    E D  T   + SAC
Sbjct: 193 RAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISAC 252

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L       W    I       +  +VLV ++LIDMY KCG+++ A  VF+ M +R++ 
Sbjct: 253 AQLGASKYANWIRD-IAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVF 311

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           S++S+I+GFA+HGRA AA+K F  ++ E    PN +TFVGVL+AC+H G+V +G+  F  
Sbjct: 312 SYSSMIVGFAIHGRARAAIKLFYDML-ETGVKPNHVTFVGVLTACSHAGLVDQGQQLFAS 370

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M   Y + P  E Y C+ DLL+RAG +++AL LV  MPM+ D  +W +LL A    H + 
Sbjct: 371 MEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA-SHVHGNP 429

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            ++E  +K++ E E     G Y+LLS  YASA RW+DV  VRKL+ +K + K PG S +E
Sbjct: 430 DVAEIASKRLFELEPDNI-GNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVE 488

Query: 486 I-DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
             +G+ H+F AGD SHP+  +I   L+ + E+LK  GY P+ S        D  K+  L 
Sbjct: 489 AKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGIN-DREKRLLLM 547

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LA+A G+L+   G  I++ KNLR+C+DCH V    S++   +I+VRD  RFHHF 
Sbjct: 548 AHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFL 607

Query: 605 DGSCSCMDYW 614
           +G+CSC ++W
Sbjct: 608 NGACSCSNFW 617


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 331/596 (55%), Gaps = 42/596 (7%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR-- 106
           KQIH Q ++         LL+ S ++  ++    +  A +VFY +++ N+  +NTL+   
Sbjct: 156 KQIHGQVIKLGF---ESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGL 212

Query: 107 -ACARSVDA--------------------------KPQAIVLFQRMIEQGNVLPDKHTFP 139
            AC    DA                          + +AI  F+ M  +G  + D++ F 
Sbjct: 213 LACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKM-DQYPFG 271

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
             L AC  L A + G+Q HA I +  L   +Y+ ++LI  Y  C  L  A  VFD M ++
Sbjct: 272 SVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK 331

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           ++VSW  M+  + Q G    A+K+F  MQ    +PD YT     SACA +++L  G   H
Sbjct: 332 NVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFH 391

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
               +     L+  + V+NSL+ +Y KCG +D + ++F  M  RD  SW +++  +A  G
Sbjct: 392 G---KAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFG 448

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
           RA  A++ FD++V +    P+ +T  GV+SAC+  G+V +G+ YF++MINEY I P   H
Sbjct: 449 RAVEAIQLFDKMV-QLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGH 507

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           Y C++DL +R+G I+EA+  ++ MP +PDA+ W +LL A C+   ++ + +  A+ +IE 
Sbjct: 508 YSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA-CRNKGNLEIGKWAAESLIEL 566

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           +    +G Y LLS +YAS  +W+ V  +R+ M +K V KEPG S I+  G  H F A D 
Sbjct: 567 DPHHPAG-YTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDE 625

Query: 499 SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
           S P + QIY  L+ + +K+   GY PD S     D  +  K   L  HSERLAIA G++ 
Sbjct: 626 SSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHH-DVEEAVKIKMLNCHSERLAIAFGLIF 684

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +  G+PIRV KNLRVC DCH  TK IS +   EI+VRD  RFH FKDG+CSC D+W
Sbjct: 685 VPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 230/534 (43%), Gaps = 101/534 (18%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRV 89
           N +S+ +       +   +K IH   +RT LP  H    +++ I+H +A      YA RV
Sbjct: 4   NYYSAQIKQCIGLGASRHVKMIHGNIIRT-LP--HPETFLHNNIVHAYALIRSSIYARRV 60

Query: 90  FYQIENPNSFTWNTLIRACA---------RSVDAKPQ---------------------AI 119
           F  I  PN F+WN L+ A +         R+ +  P                      A+
Sbjct: 61  FDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAV 120

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
             +  M++  +    + T    LK  +     S GKQ H  + K G  S + + + L+  
Sbjct: 121 KAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDM 180

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI---------- 229
           Y+  G +  A KVF  + +R+ V +N ++   +  G  + AL+LFR M+           
Sbjct: 181 YSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIK 240

Query: 230 ---------------------LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
                                  + D Y F S+  AC GL  ++ G   HA I+R    +
Sbjct: 241 GLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR---TN 297

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L   + V ++LIDMYCKC  L  A+ VF+ M ++++ SW ++++G+   GRA  A+K F 
Sbjct: 298 LQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIF- 356

Query: 329 RLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLV 383
            L ++ S   P+  T    +SAC +   + EG  +     +   IT  L HY      LV
Sbjct: 357 -LDMQRSGIDPDHYTLGQAISACANISSLEEGSQF-----HGKAITAGLIHYITVSNSLV 410

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEG 440
            L  + G+ID++  L + M ++ D V W +++ A     +   ++ L +++ +  ++ +G
Sbjct: 411 TLYGKCGDIDDSTRLFNEMNVR-DEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDG 469

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRK-------LMTDKGVTKEPGCSSIEID 487
              +GV    SR           GLV K       ++ + G+    G  S  ID
Sbjct: 470 VTLTGVISACSR----------AGLVEKGQRYFELMINEYGIVPSNGHYSCMID 513


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 340/587 (57%), Gaps = 23/587 (3%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDYAFR 88
           + SL+++    +S+   + IHA     A  Q   ++ + + +IH      + AD   A R
Sbjct: 67  YHSLITACARYRSLDDARAIHAH---LAGSQFAGSVFLDNSLIHLYCKCGAVAD---ARR 120

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  +   +  +W +LI   A++ D   +A+ L   M+ +G   P+  TF   LKA    
Sbjct: 121 VFDGMPARDMCSWTSLIAGYAQN-DMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGAS 178

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +   G+Q HA   K     DVY+ ++L+  YA CG +D+A  VFD +  ++ VSWN +I
Sbjct: 179 ASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALI 238

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F + G+ ++ L +F  MQ   FE   +T+ S+ SA AG+  L  G W HA++++  + 
Sbjct: 239 AGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGER 298

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
                  V N+++DMY K GS+  AR+VF+ + K+D+ +WNS++  FA +G    A+ +F
Sbjct: 299 ---LSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHF 355

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +  +     N ITF+ +L+AC+H G+V EG+ YFD M+ EYN+ P ++HY  +VDLL 
Sbjct: 356 EEMR-KCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLG 413

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG +++AL  +  MPMKP A +W +LL +C + H +  + +  A  V E +    +G  
Sbjct: 414 RAGLLNDALVFIFKMPMKPTAAVWGALLGSC-RMHKNAKIGQFAADHVFELDPDD-TGPP 471

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLL  +YAS  +W+    VRK+M   GV KEP CS +EI+   H F A D +HP++++IY
Sbjct: 472 VLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIY 531

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
              + I  +++  GY P+     + VDE +  +Q+ L+ HSE++A+A  ++N+  G  IR
Sbjct: 532 KKWEEISIQIRKAGYVPNTDYVLLHVDEQE--RQAKLQYHSEKIALAFALINMPLGATIR 589

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
           + KN+R+C DCH   + IS++F  EI+VRD  RFHHF  GSCSC DY
Sbjct: 590 IMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 329/584 (56%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           + S +++  + K++   ++IHA    +         L  S I  +     +  A  VF Q
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGD--AFLDNSLIHMYCKCRSVLDARNVFDQ 111

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  +W +LI   A++ D   +AI L   M+ +G   P+  TF   LKA        
Sbjct: 112 MRRKDMVSWTSLIAGYAQN-DMPVEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSG 169

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q HA   K G   DVY+ ++L+  YA CG +D+A  VFD +  ++ VSWN +I  F 
Sbjct: 170 TGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + G+ +SAL  F  M +  FE   +T+ S+ S+ A L  L  G W HA++++        
Sbjct: 230 RKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQK---L 286

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              V N+L+DMY K GS+  AR+VF+ +  +DL +WNS++  FA +G  + A+ +F+ + 
Sbjct: 287 TAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMR 346

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +     N ITF+ +L+AC+H G+V EG+ YF+ M+ EY++ P ++HY  +V LL RAG 
Sbjct: 347 -KSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHYVTVVALLGRAGL 404

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++ AL  +  MPM+P A +W +LL A C+ H +  + +  A  V E +    SG  VLL 
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALL-AACRMHKNAKVGQFAADHVFELDPDD-SGPPVLLY 462

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YAS  +W+    VR +M   GV KEP CS +E++   H F A D +HPQ ++IY    
Sbjct: 463 NIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWG 522

Query: 512 LIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
            I +K++  GY PD     + VD  D  K+++L+ HSE+LA+A  ++ +  G  IR+ KN
Sbjct: 523 EISKKIRKEGYVPDMDYVLLHVD--DQEKEANLQYHSEKLALAFALIEMPAGATIRIMKN 580

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+C DCH   K IS++F  EI+VRD  RFHHF  GSCSC DYW
Sbjct: 581 IRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 9/295 (3%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +++ G + P    +   + ACA        ++ HAH+       D +++NSLIH Y  C 
Sbjct: 41  LLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCR 100

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            +  A  VFD M  + +VSW  +I  + Q      A+ L   M +  F+P+G+TF S+  
Sbjct: 101 SVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           A    A    G   HA  ++   H    DV V ++L+DMY +CG +D+A  VF+ +  ++
Sbjct: 161 AAGAYADSGTGRQIHALAVKCGWHE---DVYVGSALLDMYARCGKMDMATAVFDKLDSKN 217

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR-DY 362
             SWN++I GFA  G  E+AL  F  + +   F     T+  V S+    G + +G+  +
Sbjct: 218 GVSWNALISGFARKGDGESALMTFAEM-LRNGFEATHFTYSSVFSSIARLGALEQGKWVH 276

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             V+ +   +T  + +   L+D+ A++G++ +A  +   +  K D V W S+L A
Sbjct: 277 AHVIKSRQKLTAFVGN--TLLDMYAKSGSMIDARKVFDRVDNK-DLVTWNSMLTA 328


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 342/613 (55%), Gaps = 39/613 (6%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           PT QT  H I+                 S  +  S+S    +H   + +   Q     L 
Sbjct: 76  PTQQTFEHLIY-----------------SCAQKNSLSYGLDVHRCLVDSGFDQD--PFLA 116

Query: 71  YSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
              I  +     +D A +VF +      + WN L RA A     K + + L+ +M   G 
Sbjct: 117 TKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGK-ELLDLYIQMNWIGT 175

Query: 131 VLPDKHTFPFALKACAY----LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
              D+ T+ + LKAC      +    +GK+ HAHI + G  +++++  +L+  YA  G +
Sbjct: 176 P-SDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSV 234

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-----PDGYTFQSI 241
             AN VF  M  ++ VSW+ MI  F +      AL+LF+ M  +FE     P+  T  ++
Sbjct: 235 SYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLM--MFEACNSVPNSVTMVNM 292

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             ACAGLA L  G   H YILR    S++    V N+LI MY +CG + + ++VF++M K
Sbjct: 293 LQACAGLAALEQGKLIHGYILRRQLDSILP---VLNALITMYGRCGEVLMGQRVFDNMKK 349

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD+ SWNS+I  + +HG  + A++ F+ ++  +  SP+ I+F+ VL AC+H G+V EG+ 
Sbjct: 350 RDVVSWNSLISIYGMHGFGKKAIQIFENMI-HQGVSPSYISFITVLGACSHAGLVEEGKI 408

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            F+ M+++Y I P +EHY C+VDLL RA  + EA+ L+ +M  +P   +W SLL +C + 
Sbjct: 409 LFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSC-RI 467

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +V L+E  +  + E E    +G YVLL+ +YA A+ W++   V KL+  +G+ K PGC
Sbjct: 468 HCNVELAERASTVLFELEPR-NAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGC 526

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S IE+    + F + D  +PQ ++I+  L  +  ++K++GY P  +   + D  ++ K+ 
Sbjct: 527 SWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQ-TNVVLYDLDEEEKER 585

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
            +  HSE+LA+A G++N   G  IR+ KNLR+C+DCH VTK IS+  N EI+VRD  RFH
Sbjct: 586 IVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFH 645

Query: 602 HFKDGSCSCMDYW 614
           HF+DG CSC DYW
Sbjct: 646 HFRDGVCSCGDYW 658


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/494 (40%), Positives = 290/494 (58%), Gaps = 40/494 (8%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD-------------------------- 187
           G   HA   K G   D+Y+ N+L HFY  CG +                           
Sbjct: 149 GSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYV 208

Query: 188 ------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
                  A +VF+ M  R  VSW+ ++  +V+ GE D AL +FR M +     +     +
Sbjct: 209 RAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVT 268

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             SA A +  L  G + H  + R     +   V V  +L+DM+ KCG + +AR+VF+ MP
Sbjct: 269 ALSAAAQMGLLEHGRFVHEVVQR---TGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMP 325

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +RD+ +WN++I G A HG  + A++ F R  ++E   P  ITFVGVL+AC+  G+V+EGR
Sbjct: 326 RRDVFAWNAMICGLASHGLGQDAVELFWRF-LDEGLWPTDITFVGVLNACSRCGLVAEGR 384

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            YF +M+++Y I P +EHYGC+VDLL RAG + EA+ L+  M + PD V+W ++L A CK
Sbjct: 385 RYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSA-CK 443

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H  V L   V  ++IE E     G YVLL+ +YA A++W++V  VRKLM+ +G  K  G
Sbjct: 444 THNLVDLGITVGNKLIELEPA-HDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAG 502

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S +E  G  H+F  GD  H  + QIY  LD+I+ +L   GY PD S + + D  D+ K 
Sbjct: 503 WSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVS-SVLHDIGDEEKV 561

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            ++++HSERLAIA G +  + G PIR+ KNL+VC DCHE +K+++++FN EIIVRD +RF
Sbjct: 562 HAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRF 621

Query: 601 HHFKDGSCSCMDYW 614
           HH K+G CSC+DYW
Sbjct: 622 HHMKEGKCSCLDYW 635



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 56  ALRTA---LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+RT    LP+    +   + +  +     +  A  VF ++   +  +W+TL+    +  
Sbjct: 183 AMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEG 242

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
           +    A+ +F+ M+E+G V  ++     AL A A +     G+  H  + + G+   V +
Sbjct: 243 ELD-VALGVFRDMVEKG-VRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNV 300

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILF 231
             +L+  ++ CG + +A +VFD M  R + +WN MI      G    A++LF R +    
Sbjct: 301 GAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGL 360

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            P   TF  + +AC+    ++ G     + L    + +  ++     ++D+  + G +  
Sbjct: 361 WPTDITFVGVLNACSRCGLVAEGR--RYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSE 418

Query: 292 ARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           A ++ E M    D   W +++     H   +  +   ++L+
Sbjct: 419 AIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLI 459


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/567 (39%), Positives = 316/567 (55%), Gaps = 14/567 (2%)

Query: 50   KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
            +Q+HA++L+  LP      ++ S +  +A    L  A RVF ++ +P++  W  LI A  
Sbjct: 546  EQLHARSLK--LPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 603

Query: 110  RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
             + D + +A+ + +     G + PD  T    L ACA +   + G+       + G+   
Sbjct: 604  DAGDLR-EAVHVARNAFANG-MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQS 661

Query: 170  VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
            V++  + +  Y  CG +  A +VFD M  +  V+W  M+  +   G    AL LF  MQ 
Sbjct: 662  VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 721

Query: 230  L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCG 287
               +PD Y      SAC  L  L LG  A    +R  D    + + ++  +LIDMY KCG
Sbjct: 722  EGMKPDCYAVAGALSACTRLGALDLGRQA----IRMVDWDEFLDNPVLGTALIDMYAKCG 777

Query: 288  SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            S   A  VF+ M K+D+  WN++ILG  + G  + A     ++  +     N  TF+G+L
Sbjct: 778  STVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQME-KSGVKLNDNTFIGLL 836

Query: 348  SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
             +C H G++ +GR YF  M   Y+I+P +EHYGC+VDLL+RAG + EA  LV +MPM  +
Sbjct: 837  CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPAN 896

Query: 408  AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
            AVI  +LL  C K H +  L+E V KQ+I  E    SG YV+LS +Y++  RW D   +R
Sbjct: 897  AVILGALLGGC-KIHRNTELAEHVLKQLILLEP-WNSGNYVMLSNIYSNRGRWEDAAKLR 954

Query: 468  KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
              M  KGV K P CS +E +G  HEF  GD SHP + QIY  LD +  ++K+ GY P  +
Sbjct: 955  LDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPT-T 1013

Query: 528  QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
            +  M D  D+ K+ +L  HSE+LAIA  +L   PG  IRV KNLRVC DCH   KL+SRI
Sbjct: 1014 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRI 1073

Query: 588  FNVEIIVRDRARFHHFKDGSCSCMDYW 614
             + EIIVRD  RFH F+DGSCSC DYW
Sbjct: 1074 THREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 14/288 (4%)

Query: 133 PDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P   T P ALK+ + L      G+Q HA   K    ++ ++  SL+  YA CG L  A +
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           VFD M   S V W  +I A++  G+   A+ + R        PD +T   + +ACA +A 
Sbjct: 583 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 642

Query: 251 LSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           L+ G  +W  A         +   V V  + +D+Y KCG +  AR+VF+ M  +D  +W 
Sbjct: 643 LATGETVWRAAE-----QEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWG 697

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-I 367
           +++ G+A +G    AL  F  +   E   P+     G LSAC   G +  GR    ++  
Sbjct: 698 AMVGGYASNGHPREALDLFLAMQA-EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 756

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +E+   PVL     L+D+ A+ G+  EA  +   M  K D ++W +++
Sbjct: 757 DEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQM-RKKDIIVWNAMI 801


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 312/541 (57%), Gaps = 13/541 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L+ A ++F ++   +S++W  ++    +  D   +A+VL+  M    N  P+  
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKK-DQPEEALVLYSLMQRVPNSRPNIF 219

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T   A+ A A +    +GK+ H HI + GL SD  + +SL+  Y  CG +D A  +FD +
Sbjct: 220 TVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 279

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGM 255
           +E+ +VSW  MID + +   +     LF  +    E P+ YTF  + +ACA L T  LG 
Sbjct: 280 VEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGK 339

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y+ R            ++SL+DMY KCG+++ A+ V +  PK DL SW S+I G A
Sbjct: 340 QVHGYMTRV---GFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCA 396

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G+ + ALKYFD L+++    P+ +TFV VLSAC H G+V +G ++F  +  ++ ++  
Sbjct: 397 QNGQPDEALKYFD-LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHT 455

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            +HY CLVDLLAR+G  ++   ++S MPMKP   +W S+L  C   + ++ L+EE A+++
Sbjct: 456 SDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGC-STYGNIDLAEEAAQEL 514

Query: 436 --IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
             IE E  +    YV ++ +YA+A +W + G +RK M + GVTK PG S  EI    H F
Sbjct: 515 FKIEPENPV---TYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVF 571

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
            A DTSHP   QI  FL  + +K+K  GY P  S   + D  D+ K+ +L  HSE+LA+A
Sbjct: 572 IAADTSHPMYNQIVEFLRELRKKMKEEGYVPATS-LVLHDVEDEQKEENLVYHSEKLAVA 630

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
             IL+ + G  I+VFKNLR C DCH   K IS I   +I VRD  RFH F++G CSC DY
Sbjct: 631 FAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDY 690

Query: 614 W 614
           W
Sbjct: 691 W 691



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 146/324 (45%), Gaps = 45/324 (13%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P   T+   ++ C+   A  +GK+ H HI   G V  + I N L+  YA CG L  A KV
Sbjct: 83  PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKV 142

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTF-------------- 238
           FD M  R L SWNVM++ + + G  + A KLF  M    E D Y++              
Sbjct: 143 FDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMT---EKDSYSWTAMVTGYVKKDQPE 199

Query: 239 ---------QSITSACAGLATLSL-------------GMWAHAYILRHCDHSLVTDVLVN 276
                    Q + ++   + T+S+             G   H +I+R     L +D ++ 
Sbjct: 200 EALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVR---AGLDSDEVLW 256

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           +SL+DMY KCG +D AR +F+ + ++D+ SW S+I  +    R       F  L V    
Sbjct: 257 SSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSEL-VGSCE 315

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            PN  TF GVL+AC        G+     M       P       LVD+  + GNI+ A 
Sbjct: 316 RPNEYTFAGVLNACADLTTEELGKQVHGYM-TRVGFDPYSFASSSLVDMYTKCGNIESAK 374

Query: 397 HLVSNMPMKPDAVIWRSLLDACCK 420
           H+V   P KPD V W SL+  C +
Sbjct: 375 HVVDGCP-KPDLVSWTSLIGGCAQ 397


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/541 (38%), Positives = 314/541 (58%), Gaps = 13/541 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L+ A  +F ++   +S++W  ++    +  D   +A+VL+  M    N  P+  
Sbjct: 163 YAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKK-DQPEEALVLYSLMQRVPNSKPNIF 221

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T   A+ A A +    +GK+ H HI + GL SD  + +SL+  Y  CG +D A  +FD +
Sbjct: 222 TVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 281

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGM 255
           +++ +VSW  MID + +   +     LF  +    E P+ YTF  + +ACA L T  LG 
Sbjct: 282 IDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGR 341

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y+ R            ++SLIDMY KCG+++ AR V +  PK DL S  S+I G+A
Sbjct: 342 QVHGYMTRV---GFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYA 398

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G+ + ALKYFD L+++    P+ +TFV VLSAC H G+V +G ++F  +  ++++T  
Sbjct: 399 QNGKPDEALKYFD-LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHT 457

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            +HY CLVDLLAR+G  ++   ++S MPMKP   +W S+L  C   + ++ L+EE A+++
Sbjct: 458 SDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGC-STYGNIDLAEEAAQEL 516

Query: 436 --IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
             IE E  +    YV ++ +YA+A +W + G +RK M + G+TK+PG S  EI    H F
Sbjct: 517 FKIEPENPV---TYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVF 573

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
            A DTSHP   QI  FL  + +K+K  GY P  S   + D  D+ K+ +L  HSE+LA+A
Sbjct: 574 IAADTSHPMYNQIIEFLGELRKKMKEEGYVPATS-LVLHDVEDEQKEENLVYHSEKLAVA 632

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
             IL+ + G  I+VFKNLR C DCH   K IS+I   +I +RD  RFH F++G CSC DY
Sbjct: 633 FAILSTEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDY 692

Query: 614 W 614
           W
Sbjct: 693 W 693



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 142/316 (44%), Gaps = 39/316 (12%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P   T+   ++ C+   A  +GK+ H HI   G V  + I N ++  YA CG L  A KV
Sbjct: 85  PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKV 144

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ------------------------ 228
           FD M ER + SWNVM++ + + G  + A  LF  M                         
Sbjct: 145 FDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEAL 204

Query: 229 ILF---------EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           +L+         +P+ +T  S  +A A +  +  G   H +I+R     L +D ++ +SL
Sbjct: 205 VLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVR---AGLDSDEVLWSSL 261

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           +DMY KCG +D AR +F+ +  +D+ SW S+I  +    R       F  L +     PN
Sbjct: 262 MDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSEL-IGSCERPN 320

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
             TF GVL+AC        GR     M       P       L+D+  + GNI+ A H+V
Sbjct: 321 EYTFSGVLNACADLTTEELGRQVHGYM-TRVGFDPYSFASSSLIDMYTKCGNIESARHVV 379

Query: 400 SNMPMKPDAVIWRSLL 415
              P KPD V   SL+
Sbjct: 380 DGCP-KPDLVSLTSLI 394



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 121/311 (38%), Gaps = 82/311 (26%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  IFK  L+S  Y +                 K FD+ LE       V+++   +   F
Sbjct: 14  HGLIFKSNLLSSSYASQKRFS----------DKKFFDSKLEDG----GVVVERLCRANRF 59

Query: 218 DSALKLFRRMQILFE----------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             A+ +    ++L E          P   T+ ++   C+    L  G   H +I      
Sbjct: 60  GEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIR---TS 116

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
             V  +++ N ++ MY KCGSL  AR+VF+ MP+RD+ SWN ++ G+A  G  E A   F
Sbjct: 117 GFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLF 176

Query: 328 DRLVVEESFS-------------------------------PNSITFVGVLS-----ACN 351
           D +   +S+S                               PN  T    ++      C 
Sbjct: 177 DEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCI 236

Query: 352 HRG------MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            RG      +V  G D  +V+            +  L+D+  + G IDEA ++   + + 
Sbjct: 237 RRGKEIHGHIVRAGLDSDEVL------------WSSLMDMYGKCGCIDEARNIFDKI-ID 283

Query: 406 PDAVIWRSLLD 416
            D V W S++D
Sbjct: 284 KDVVSWTSMID 294


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/617 (36%), Positives = 326/617 (52%), Gaps = 46/617 (7%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++ N+      L+ CK ++ L QIHAQ + +     H    I   I  ++ F   D A  
Sbjct: 48  TYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHS---ITHLINLYSLFHKCDLARS 104

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF    NP+   WN++IRA  RS     +A+ ++  M+E+G +  D       +   + +
Sbjct: 105 VFDSTPNPSRILWNSMIRAYTRSKQYN-EALEMYYCMVEKGGLERDVFIGAGLVDMYSKM 163

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               + ++    + KR    DV   N++I   +      +A +VFD M+++  VSW  M+
Sbjct: 164 GDLKRAREVFDKMPKR----DVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMM 219

Query: 209 DAFVQFGEFDSALKLFRRMQIL-------------------------------FEPDGYT 237
             +   G F   L+LF +M++                                F P+  T
Sbjct: 220 AGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 279

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
           F S+  A A LA    GM  HA I++      +++ LV NSLIDMY KCG LD + ++F 
Sbjct: 280 FVSVLPAAAYLAAFREGMAFHACIIQM---GFLSNTLVGNSLIDMYAKCGQLDYSEKLFN 336

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            M  +D  SWN+++ G+A+HG  + A+  F  L+ E     +S++FV VLSAC H G+V 
Sbjct: 337 EMDHKDTVSWNAMLSGYAVHGHGDRAIALFS-LMQESQVQIDSVSFVSVLSACRHAGLVE 395

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           EGR  F  M ++Y+I P LEHY C+VDLL RAG  DE L  +  MP++PDA +W +LL +
Sbjct: 396 EGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGS 455

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
           C + H++V L E     +++ E       +V+LS +YA + RW D G  R  M D G+ K
Sbjct: 456 C-RMHSNVKLGEVALDHLVKLEPR-NPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKK 513

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PGCS +E+    H F  GD SHPQ + ++   + + EK++  GY PD S      E +D
Sbjct: 514 TPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEED 573

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K+  L  HSERLAI   +LN  PG  I++ KNLRVC DCH  TK IS+I    IIVRD 
Sbjct: 574 -KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDA 632

Query: 598 ARFHHFKDGSCSCMDYW 614
            RFHHF+DG CSC DYW
Sbjct: 633 TRFHHFEDGICSCNDYW 649


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/587 (38%), Positives = 332/587 (56%), Gaps = 20/587 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SSLL    +   +     IH  A++  L  +    +  + I  +A F +L  A  +F Q+
Sbjct: 244 SSLLPICVQLDDIISGVLIHVYAIKLGL--EFDLFVCNALINMYAKFGELRSAETIFNQM 301

Query: 94  ENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +  +  +WN+L+ A  +  + KP  A+ ++ +M   G V+PD  T        A L  F 
Sbjct: 302 KVRDIVSWNSLLAAFEQ--NKKPVIALGVYNKMHSIG-VVPDLLTLVSLASVAAELGNFL 358

Query: 153 QGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             +  H  + +R   + D+ + N++I  YA  G +D A KVF+ +  + ++SWN +I  +
Sbjct: 359 SSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGY 418

Query: 212 VQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
            Q G  + A+ ++  M+      P+  T+ SI +A + L  L  GM AH  ++++    L
Sbjct: 419 SQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF---L 475

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D+ V+  L+DMY KCG L  A  +F  +P +   SWN+II    LHG    A+K F  
Sbjct: 476 YFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKE 535

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +   E   P+ ITFV +LSAC+H G+V EG+  F +M   Y I P L+HYGC+VDL  RA
Sbjct: 536 MQ-SEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRA 594

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVY 447
           G++++A + V NMP++PD  +W +LL AC + H +V L   V+  +  +ESE     G Y
Sbjct: 595 GHLEKAFNFVKNMPVRPDVSVWGALLGAC-RIHENVELVRTVSDHLLKVESEN---VGYY 650

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA    W  V  VR L  D+G+ K PG SSIE+D     F+ G+ +HP+ ++IY
Sbjct: 651 VLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIY 710

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L  +  K+KS GY PDY+   + D  DD K++ L  HSERLA+A GI++  P   +++
Sbjct: 711 SELRNLTAKMKSIGYVPDYN-FVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQI 769

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           FKNLRVC DCH  TK IS+I   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 770 FKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 14/375 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTW 101
           C  +   KQ+HA  + +   Q   ++ + +++I+ +A   D+ +A   F QI+  + +TW
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQ---SIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTW 109

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N++I A AR +     A+  F   +    +  D +TFP  ++AC  L     G++ H  +
Sbjct: 110 NSMISAYAR-IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL---DDGRKVHCLV 165

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K G   DVYI  S IHFY+  G + LA  +FDNM+ R + +WN MI  F   G+   AL
Sbjct: 166 LKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEAL 225

Query: 222 KLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           ++F  M+      D  T  S+   C  L  +  G+  H Y ++     L  D+ V N+LI
Sbjct: 226 EVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIK---LGLEFDLFVCNALI 282

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           +MY K G L  A  +F  M  RD+ SWNS++  F  + +   AL  ++++       P+ 
Sbjct: 283 NMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKM-HSIGVVPDL 341

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +T V + S     G     R     +         +     ++D+ A+ G ID A  +  
Sbjct: 342 LTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFE 401

Query: 401 NMPMKPDAVIWRSLL 415
            +P+K D + W SL+
Sbjct: 402 GLPVK-DVISWNSLI 415


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 343/587 (58%), Gaps = 15/587 (2%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFADLDYAFR 88
           F+ + + +++  E +++ + +Q+HA   R    +    + + +R++  +     LD A  
Sbjct: 42  FHEYEAAITACIERRALWEGRQVHA---RMITARYRPAVFLGTRLVTMYVRCGALDDARN 98

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           V  ++   +  +W T+I   +++ +   +A+ LF +M+  G  +P+++T    L +C+  
Sbjct: 99  VLDRMPERSVVSWTTMISGYSQT-ERHVEALDLFIKMLRAG-CIPNEYTLATVLTSCSGP 156

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +  QGKQ H+ + K    S +++ +SL+  YA   ++  A +VFD + ER +VS   +I
Sbjct: 157 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 216

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G  + AL LFR++     + +  TF ++ +A +GLA+L  G   HA ILR    
Sbjct: 217 SGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRK--- 273

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L   V + NSLIDMY KCG L  +R+VF++M +R + SWN++++G+  HG     +  F
Sbjct: 274 ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF 333

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             L   +   P+S+T + VLS C+H G+V EG D FD ++ E +      HYGC++DLL 
Sbjct: 334 KDL--HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 391

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R+G +++AL+L+ NMP +    IW SLL AC + HA+V + E VA++++E E    +G Y
Sbjct: 392 RSGRLEKALNLIENMPFESTPSIWGSLLGAC-RVHANVHVGELVAQKLLEMEPE-NAGNY 449

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           V+LS +YA+A  W DV  VRKLM +K VTKEPG S I +D + H F + +  HP  K I 
Sbjct: 450 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 509

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             +  I   +K+ G+ PD S   + D  D+ K+  L  HSE+LAI  G++N  PG+ IRV
Sbjct: 510 AKIKEIFVDIKAAGFVPDLS-CVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRV 568

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLR+C DCH   K +S+++  EI +RD+ RFH    G+C+C DYW
Sbjct: 569 MKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 345/621 (55%), Gaps = 23/621 (3%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQAL 57
           M   ++Q G       +  + +  R EG   +  ++ S L  C  +  +     IH   +
Sbjct: 244 MISGLIQNGNAA---QALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVI 300

Query: 58  RTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
           +  L  +   L + + +I+ +A F +L  A +VF Q+   +  +WN++I A  ++ D   
Sbjct: 301 KHGLEFE---LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVT 357

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVYINNS 175
                F+  ++   + PD  T        A    +   +  H  I +RG L+  V I N+
Sbjct: 358 ARGFFFK--MQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNA 415

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-- 233
           ++  YA  G +D A+KVF+ +  + +VSWN +I  + Q G    A++++R M+   E   
Sbjct: 416 VMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKL 475

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  T+ SI +A A +  L  GM  H ++++   H    DV V   LID+Y KCG L  A 
Sbjct: 476 NQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLH---LDVFVGTCLIDLYGKCGRLVDAM 532

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            +F  +P+     WN+II    +HG  E ALK F R + +E   P+ +TF+ +LSAC+H 
Sbjct: 533 CLFYQVPRESSVPWNAIISCHGIHGHGEKALKLF-REMQDEGVKPDHVTFISLLSACSHS 591

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V EG+ +F +M  EY I P L+HYGC+VDLL RAG ++ A   + +MP+ PDA IW +
Sbjct: 592 GLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGA 650

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL AC + H ++ L +  + ++ E +     G YVLLS +YA+  +W  V  VR L  ++
Sbjct: 651 LLGAC-RIHGNIELGKFASDRLFEVDSENV-GYYVLLSNIYANVGKWEGVDKVRSLARER 708

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           G+ K PG SSIE++     F+ G+ SHP+ K+IY  L ++  K+KS GY PDYS   + D
Sbjct: 709 GLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYS-FVLQD 767

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             +D K+  L  HSERLAIA GI++  P   IR+FKNLRVC DCH  TK ISRI   EI+
Sbjct: 768 VEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIV 827

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           VRD  RFHHFK+G CSC DYW
Sbjct: 828 VRDSKRFHHFKNGICSCGDYW 848



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 187/382 (48%), Gaps = 14/382 (3%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENP 96
           S    C      K++HA  + +   Q +    I  R+++ +AS  D+  +   F QI+  
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSN---FISIRLVNLYASLGDVSLSRGTFDQIQRK 137

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           + +TWN++I A  R+   + +AI  F +++       D +TFP  LKAC  L     G++
Sbjct: 138 DVYTWNSMISAYVRNGHFR-EAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV---DGRK 193

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H  +FK G   DV++  SLIH Y+  G + +A  +FD+M  R + SWN MI   +Q G 
Sbjct: 194 IHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGN 253

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              AL +   M++     D  T  SI   CA L  +S     H Y+++   H L  ++ V
Sbjct: 254 AAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIK---HGLEFELFV 310

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           +N+LI+MY K G+L  A++VF+ M  RD+ SWNSII  +  +     A  +F ++ +   
Sbjct: 311 SNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL-NG 369

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ +T V + S           R     ++    +   +     ++D+ A+ G ID A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 396 LHLVSNMPMKPDAVIWRSLLDA 417
             + + +P+K D V W +L+  
Sbjct: 430 HKVFNLIPVK-DVVSWNTLISG 450


>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
 gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
          Length = 622

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 338/580 (58%), Gaps = 19/580 (3%)

Query: 44  KSMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
           +S+ ++++ HA+ ++  +   P+  + LL    +  +     ++ A  +F  +  P +F 
Sbjct: 53  RSLDEVRKAHARHIKLGVDRCPRHARPLLAACALSGWP--GGMELAASIFESLVEPEAFD 110

Query: 101 WNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
           +NTL+R      R       A+ L+  M+E G V PD +TFPF LKACA L +  QG+Q 
Sbjct: 111 YNTLMRGHVGGGRGDREPAAALRLYVDMLEAG-VGPDSYTFPFVLKACAQLASLQQGRQL 169

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFG 215
            AHI K GL  D ++ NSLI FY  CG   +A   FD +   ER+  SW+ ++ A+ + G
Sbjct: 170 QAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEERTTASWSALLAAYTKAG 229

Query: 216 EFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            +   L+ F  M +  + PD  +  S  SACA L    +G   H  +LR+   +   + +
Sbjct: 230 LWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRN---TARLNTI 286

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +  SL+DMY KCGS++ A  VF++M  ++  ++++++ G ALHG    AL+ FD +V  E
Sbjct: 287 MQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDGRKALQVFDAMV-RE 345

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             +P++  +VGVL+AC+  G++ +G   FD M  E+   P  +HYGC+VDL+ARAG +D+
Sbjct: 346 GHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGCMVDLMARAGRLDD 405

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A  L+ +MP  P    WRSLL+A C+ H  + L+E   ++ + S G   +G YV+++ ++
Sbjct: 406 ARALIGSMPTGPTDTAWRSLLNA-CRIHGDLDLAESALEE-LRSLGAANAGDYVIVADMH 463

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A A+ W      R    D G+ + PG S++E+ G  H F + D SHP+T+ IY  L  ++
Sbjct: 464 ARAKNWAAAAAFRTEAVDWGLAQSPGFSAVEVRGELHRFVSQDMSHPRTRDIYEMLHQME 523

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +L+  GY PD S+ A+ D  ++ K+  +  HS++LA+A G+L+   G P+RV  NLR+ 
Sbjct: 524 WQLRFDGYRPDTSEVAL-DVGEEEKRHVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMS 582

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+CH  + LIS IF  EI++RDR R H F+ G+C+C DYW
Sbjct: 583 KECHAYSALISEIFGREIVIRDRNRLHRFRRGACTCRDYW 622


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/567 (39%), Positives = 316/567 (55%), Gaps = 14/567 (2%)

Query: 50   KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
            +Q+HA++L+  LP      ++ S +  +A    L  A RVF ++ +P++  W  LI A  
Sbjct: 570  EQLHARSLK--LPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 627

Query: 110  RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
             + D + +A+ + +     G + PD  T    L ACA +   + G+       + G+   
Sbjct: 628  DAGDLR-EAVHVARNAFANG-MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQS 685

Query: 170  VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
            V++  + +  Y  CG +  A +VFD M  +  V+W  M+  +   G    AL LF  MQ 
Sbjct: 686  VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 745

Query: 230  L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCG 287
               +PD Y      SAC  L  L LG  A    +R  D    + + ++  +LIDMY KCG
Sbjct: 746  EGMKPDCYAVAGALSACTRLGALDLGRQA----IRMVDWDEFLDNPVLGTALIDMYAKCG 801

Query: 288  SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            S   A  VF+ M K+D+  WN++ILG  + G  + A     ++  +     N  TF+G+L
Sbjct: 802  STVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQME-KSGVKLNDNTFIGLL 860

Query: 348  SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
             +C H G++ +GR YF  M   Y+I+P +EHYGC+VDLL+RAG + EA  LV +MPM  +
Sbjct: 861  CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPAN 920

Query: 408  AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
            AVI  +LL  C K H +  L+E V KQ+I  E    SG YV+LS +Y++  RW D   +R
Sbjct: 921  AVILGALLGGC-KIHRNTELAEHVLKQLILLEP-WNSGNYVMLSNIYSNRGRWEDAAKLR 978

Query: 468  KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
              M  KGV K P CS +E +G  HEF  GD SHP + QIY  LD +  ++K+ GY P  +
Sbjct: 979  LDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPT-T 1037

Query: 528  QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
            +  M D  D+ K+ +L  HSE+LAIA  +L   PG  IRV KNLRVC DCH   KL+SRI
Sbjct: 1038 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRI 1097

Query: 588  FNVEIIVRDRARFHHFKDGSCSCMDYW 614
             + EIIVRD  RFH F+DGSCSC DYW
Sbjct: 1098 THREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 14/288 (4%)

Query: 133 PDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P   T P ALK+ + L      G+Q HA   K    ++ ++  SL+  YA CG L  A +
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           VFD M   S V W  +I A++  G+   A+ + R        PD +T   + +ACA +A 
Sbjct: 607 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 666

Query: 251 LSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           L+ G  +W  A         +   V V  + +D+Y KCG +  AR+VF+ M  +D  +W 
Sbjct: 667 LATGETVWRAAE-----QEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWG 721

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-I 367
           +++ G+A +G    AL  F  +   E   P+     G LSAC   G +  GR    ++  
Sbjct: 722 AMVGGYASNGHPREALDLFLAMQA-EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 780

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +E+   PVL     L+D+ A+ G+  EA  +   M  K D ++W +++
Sbjct: 781 DEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQM-RKKDIIVWNAMI 825


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 324/539 (60%), Gaps = 10/539 (1%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    +L+ A  +F ++ + N  TWN ++    +  +   +A++LF RM E  + +PD++
Sbjct: 145 YLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTK-FEMNEEALLLFSRMNEL-SFMPDEY 202

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +    L+ CA+L A   G+Q HA++ K G   ++ +  SL H Y   G +    +V + M
Sbjct: 203 SLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWM 262

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            + SLV+WN ++    Q G F+  L  +  M++  F PD  TF S+ S+C+ LA L  G 
Sbjct: 263 PDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGK 322

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA  ++       ++V V +SL+ MY +CG L  + + F    +RD+  W+S+I  + 
Sbjct: 323 QIHAEAVKA---GASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYG 379

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG+ E A+K F+ +  +E+   N ITF+ +L AC+H G+  +G   FD+M+ +Y +   
Sbjct: 380 FHGQGEEAIKLFNEME-QENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKAR 438

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           L+HY CLVDLL R+G ++EA  ++ +MP+K DA+IW++LL AC K H +  ++  VA +V
Sbjct: 439 LQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSAC-KIHKNAEIARRVADEV 497

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           +  +    S  YVLL+ +Y+SA RW +V  VR+ M DK V KEPG S +E+    H+F  
Sbjct: 498 LRIDPQD-SASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHM 556

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD  HP+  +I  +L+ +  ++K +GY PD S + + D  ++ K+  LR HSE+LAIA  
Sbjct: 557 GDECHPKHVEINQYLEELTSEIKRQGYVPDTS-SVLHDMDNEEKEQILRHHSEKLAIAFA 615

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++N   G+PIRV KNLRVC DCH   K IS I  +EIIVRD +RFHHFK+G+CSC DYW
Sbjct: 616 LMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 36/262 (13%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA--------- 181
           +  +   F   L+AC  L + S GKQ H+ IF  G  SD +I+N L++ Y+         
Sbjct: 65  IWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAV 124

Query: 182 ------------SC----------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
                       SC          G+L+ A  +FD M +R++ +WN M+    +F   + 
Sbjct: 125 ALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEE 184

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL LF RM ++ F PD Y+  S+   CA L  L  G   HAY+++ C      +++V  S
Sbjct: 185 ALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMK-C--GFECNLVVGCS 241

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L  MY K GS+    +V   MP   L +WN+++ G A  G  E  L  +  + +   F P
Sbjct: 242 LAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKM-AGFRP 300

Query: 339 NSITFVGVLSACNHRGMVSEGR 360
           + ITFV V+S+C+   ++ +G+
Sbjct: 301 DKITFVSVISSCSELAILCQGK 322



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 43/227 (18%)

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +I  EP    F ++  AC  L ++SLG   H+ I         +D  ++N L+++Y K G
Sbjct: 64  EIWAEPR--LFSNLLQACIPLKSVSLGKQLHSLIF---TSGCSSDKFISNHLLNLYSKFG 118

Query: 288 SLDIARQVFESMPKRDLTS-------------------------------WNSIILGFAL 316
            L  A  +F+ MP+R++ S                               WN+++ G   
Sbjct: 119 ELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTK 178

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPV 375
               E AL  F R+  E SF P+  +   VL  C H G +  G+  +  VM   +    V
Sbjct: 179 FEMNEEALLLFSRM-NELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLV 237

Query: 376 LEHYGC-LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           +   GC L  +  +AG++ +   +++ MP     V W +L+    +K
Sbjct: 238 V---GCSLAHMYMKAGSMHDGERVINWMP-DCSLVAWNTLMSGKAQK 280


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/543 (39%), Positives = 328/543 (60%), Gaps = 20/543 (3%)

Query: 77   FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDK 135
            +A   +L    +VF  I+     +WNTLI    R  + +P+ A++LF +M  QG ++PD 
Sbjct: 545  YADTGNLRDCHKVFETIKEKTILSWNTLISIFTR--NGQPEEALLLFVQMQTQG-LMPDS 601

Query: 136  HTFPFALKACAYLFAFSQ-GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            ++   +L AC  + +FSQ G Q H +I K G  +D ++ N+LI  YA CG +  ANK+F+
Sbjct: 602  YSLASSLSACGTI-SFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFE 659

Query: 195  NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSL 253
             + E+SLV+WN MI  F Q G    A+ LF +M +   + D  TF S+  AC+ L  L  
Sbjct: 660  KIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEK 719

Query: 254  GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
            G W H  ++ +    L  D  ++ +L DMY KCG L +A  VF+ M +R + SW+ +I G
Sbjct: 720  GKWVHHKLIMY---GLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAG 776

Query: 314  FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
            + +HG+  A +  F++++      PN ITF+ +LSAC+H G V EG+ YF+ M +E+ + 
Sbjct: 777  YGMHGQINATISLFNQML-GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVE 834

Query: 374  PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
            P  +H+ C+VDLL+RAG+++ A  +++++P   ++ IW +LL+ C + H  + + + + K
Sbjct: 835  PKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGC-RIHKRIDIIKSIEK 893

Query: 434  QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
             +++ +    +G Y LLS +YA    W+  G VR +M  KG+ K PG S+IEID   + F
Sbjct: 894  NLLDVDTAD-TGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRF 952

Query: 494  FAGDTSHPQTKQIYGFLDLIDEKLKSRGY--TPDYSQAAMVDELDDGKQSSLRLHSERLA 551
              GDTSH QTK IY FL+     + ++ Y   PD S   +V      K++++  HSE+LA
Sbjct: 953  GPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNS---IVGTSKFNKENNVVSHSEKLA 1009

Query: 552  IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
            IA GI+N +PG  +R+ KNLRVC+DCH   K+ S+I   EII+RD  RFH F++GSCSC 
Sbjct: 1010 IAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCN 1069

Query: 612  DYW 614
            DYW
Sbjct: 1070 DYW 1072



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 187/414 (45%), Gaps = 79/414 (19%)

Query: 6   VQGGPPTPQTHSHSIFNNNRNEGSFN-NHSSLLSSLTECKSMSQLKQIHAQALRTAL--- 61
           V G PP   +  ++ F        F  N S  L+S   C + + L Q+HA    T L   
Sbjct: 328 VPGDPPGEASAEYACF--------FTLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRH 379

Query: 62  -PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
            P   K +  Y++I  F S      + RVF     P+SF W  LI+ C        +A+ 
Sbjct: 380 PPASTKLIESYAQIGIFES------SKRVFDTFPKPDSFMWGVLIK-CYVWGGFFEEAVS 432

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAY----------------LFAFSQ----------- 153
           L+  M+ Q         FP  LKAC+                 L  FSQ           
Sbjct: 433 LYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSV 492

Query: 154 -------------------------GKQAHAHIFKRGLVSDV-YINNSLIHFYASCGHLD 187
                                    G+  H  + +R +  ++ ++  +L+  YA  G+L 
Sbjct: 493 TMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLR 552

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
             +KVF+ + E++++SWN +I  F + G+ + AL LF +MQ     PD Y+  S  SAC 
Sbjct: 553 DCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACG 612

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            ++   LG   H YI++  +     +  V N+LIDMY KCG +  A ++FE + ++ L +
Sbjct: 613 TISFSQLGAQIHGYIIKTGNF----NDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVT 668

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           WNS+I GF+ +G +  A+  FD++ +      + +TF+ V+ AC+H G + +G+
Sbjct: 669 WNSMICGFSQNGYSVEAITLFDQMYM-NCVKMDKLTFLSVIQACSHLGYLEKGK 721



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 28/177 (15%)

Query: 239 QSITS--ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           +S+TS   CA   TL+  + AH +I     H   +       LI+ Y + G  + +++VF
Sbjct: 350 RSLTSHKRCATSTTLTQ-LHAHLFITGLHRHPPAS-----TKLIESYAQIGIFESSKRVF 403

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN----- 351
           ++ PK D   W  +I  +   G  E A+  +  +V ++    ++  F  VL AC+     
Sbjct: 404 DTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDL 463

Query: 352 ----HRGMVSEGRDYFDVMINE---------YNITPVLEHYGCLVDLLARAGNIDEA 395
                 G  SEG D F  MI+E          ++T      G L   L R G + E 
Sbjct: 464 SVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSL--RLGRLGRVKEG 518


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 332/574 (57%), Gaps = 17/574 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTL 104
           + QL+Q+HA  + T+  +    L   +++I  A  A  + Y   +F  +  P+ F +N++
Sbjct: 22  VKQLQQVHAHLIVTSYGRSRSLL---TKLITLACSARAIAYTHLLFLSVPLPDDFLFNSV 78

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I++ ++     P   V + R +   NV P  +TF   +K+CA L A   GK  H H    
Sbjct: 79  IKSTSKL--RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVS 136

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   D Y+  +L+ FY+ CG ++ A +VFD M E+S+V+WN ++  F Q G  + A+++F
Sbjct: 137 GFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVF 196

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
            +M +  FEPD  TF S+ SACA    +SLG W H YI+      L  +V +  +LI++Y
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIV---SEGLDVNVKLGTALINLY 253

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            +CG +  AR+VF+ M + ++ +W ++I  +  HG  + A+  F+++  +    PN++TF
Sbjct: 254 SRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTF 313

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           V VLSAC H G+V +GR  +  M   Y + P +EH+ C+VD+L RAG +DEA   +  + 
Sbjct: 314 VAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLD 373

Query: 404 MKPDAV---IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
              +A    +W ++L A CK H +  L  E+AK++I  E     G +V+LS +YA + + 
Sbjct: 374 ATGNATAPALWTAMLGA-CKMHRNYDLGVEIAKRLIALEPE-NPGHHVMLSNIYALSGKT 431

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
           ++V  +R  M    + K+ G S IE++   + F  GD SH +T +IY +L+ +  + K  
Sbjct: 432 DEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEI 491

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY P  S+  M    ++ K+ +LR HSE+LA+A G+L       I V KNLR+C+DCH  
Sbjct: 492 GYAP-VSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDS-AITVVKNLRICEDCHSA 549

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K IS + N +IIVRD+ RFHHF++GSCSC+DYW
Sbjct: 550 FKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 329/572 (57%), Gaps = 14/572 (2%)

Query: 45   SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNT 103
            +++Q++Q+H QA    + Q    L++ ++++ F S+   LD A+ +F  +   +S +W+ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQN---LIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSV 806

Query: 104  LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
            ++   A+  D        F+ +I  G   PD +T PF ++AC  L     G+  H  ++K
Sbjct: 807  MVGGFAKVGDYM-NCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK 864

Query: 164  RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
             GL  D ++  +L+  Y  C  ++ A  +FD M ER LV+W VMI  + + G  + +L L
Sbjct: 865  FGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVL 924

Query: 224  FRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
            F +M +    PD     ++  ACA L  +        YI R        DV++  ++IDM
Sbjct: 925  FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK---KFQLDVILGTAMIDM 981

Query: 283  YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
            + KCG ++ AR++F+ M ++++ SW+++I  +  HG+   AL  F  +++     PN IT
Sbjct: 982  HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP-MMLRSGILPNKIT 1040

Query: 343  FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
             V +L AC+H G+V EG  +F  M  +Y++   ++HY C+VDLL RAG +DEAL L+ +M
Sbjct: 1041 LVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100

Query: 403  PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
              + D  +W + L AC + H  V L+E+ A  ++E +     G Y+LLS +YA+A RW D
Sbjct: 1101 TXEKDEGLWGAFLGAC-RTHKDVXLAEKAATSLLELQPQ-NPGHYILLSNIYANAGRWED 1158

Query: 463  VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
            V  +R LM+ + + K PG + IE+D  +H+F  GDT+HP++K+IY  L  +  KL+  GY
Sbjct: 1159 VAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGY 1218

Query: 523  TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
             PD +   + D  ++ K   L  HSE+LAIA G++      PIR+ KNLRVC DCH   K
Sbjct: 1219 VPD-TNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCK 1277

Query: 583  LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            L+S I    IIVRD  RFHHFK+G+CSC DYW
Sbjct: 1278 LVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 324/579 (55%), Gaps = 22/579 (3%)

Query: 3   VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNH-------SSLLSSLTECKSMSQLKQIHAQ 55
           + IV+    T Q    S+  +NR E S   H          +S+L  C++++Q++Q+HAQ
Sbjct: 26  IPIVESXIET-QFRQTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQ 84

Query: 56  ALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
           A   ++    + +++ +++I+F S+   LD A+ +F  +   +S +W+ ++   A+  D 
Sbjct: 85  A---SVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 141

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
                  F+ +I  G   PD +T PF ++AC  L     G+  H  ++K GL  D ++  
Sbjct: 142 -INCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCA 199

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEP 233
           +L+  Y  C  ++ A  +FD M ER LV+W VMI  + + G+ + +L LF +M +    P
Sbjct: 200 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 259

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D     ++  ACA L  +        YI R        DV++  ++IDMY KCG ++ AR
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRK---KFQLDVILGTAMIDMYAKCGCVESAR 316

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F+ M ++++ SW+++I  +  HG+   AL  F  +++     P+ IT   +L AC+H 
Sbjct: 317 EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP-MMLSSGMLPDKITLASLLYACSHA 375

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V EG  +F  M  +Y++   ++HY C+VDLL RAG +DEAL L+ +M ++ D  +W +
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGA 435

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
            L AC + H  VVL+E+ A  ++E +     G YVLLS +YA+A RW DV  +R LM+ +
Sbjct: 436 FLGAC-RTHKDVVLAEKAATSLLELQSQ-NPGHYVLLSNIYANAGRWEDVAKIRDLMSQR 493

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
            + K PG + IE+D  +H+F  GDT+HP++K+IY  L  +  KL+  GY PD +   + D
Sbjct: 494 RLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPD-TNFVLHD 552

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
             ++ K   L  HSE+LAIA G++      PIR+ KNLR
Sbjct: 553 VDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 343/587 (58%), Gaps = 15/587 (2%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFR 88
           F+ + + +++  E +++ + +Q+HA   R    +    + + +R++  +     LD A  
Sbjct: 10  FHEYEAAITACIERRALWEGRQVHA---RMITARYRPAVFLGTRLVTMYVRCGALDDARN 66

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           V  ++   +  +W T+I   +++ +   +A+ LF +M+  G  +P+++T    L +C+  
Sbjct: 67  VLDRMPERSVVSWTTMISGYSQT-ERHVEALDLFIKMLRAG-CIPNEYTLATVLTSCSGP 124

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            +  QGKQ H+ + K    S +++ +SL+  YA   ++  A +VFD + ER +VS   +I
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 184

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G  + AL LFR++     + +  TF ++ +A +GLA+L  G   HA ILR    
Sbjct: 185 SGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRK--- 241

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L   V + NSLIDMY KCG L  +R+VF++M +R + SWN++++G+  HG     +  F
Sbjct: 242 ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF 301

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             L   +   P+S+T + VLS C+H G+V EG D FD ++ E +      HYGC++DLL 
Sbjct: 302 KDL--HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 359

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R+G +++AL+L+ NMP +    IW SLL AC + HA+V + E VA++++E E    +G Y
Sbjct: 360 RSGRLEKALNLIENMPFESTPSIWGSLLGAC-RVHANVHVGELVAQKLLEMEPE-NAGNY 417

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           V+LS +YA+A  W DV  VRKLM +K VTKEPG S I +D + H F + +  HP  K I 
Sbjct: 418 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 477

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             +  I   +K+ G+ PD S   + D  D+ K+  L  HSE+LAI  G++N  PG+ IRV
Sbjct: 478 AKIKEIFVDIKAAGFVPDLS-CVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRV 536

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLR+C DCH   K +S+++  EI +RD+ RFH    G+C+C DYW
Sbjct: 537 MKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/649 (35%), Positives = 345/649 (53%), Gaps = 67/649 (10%)

Query: 20  IFNNNRNEGSFN-NHSSLLSSLTECKSM---SQLKQIHAQALRTALPQQHKTLLIYSRII 75
           +F+   NE  F  +  +L++ L  C S+   S  KQ H  A+ + + Q    + + + ++
Sbjct: 215 MFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQN---MFVGNCLV 271

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ------ 128
             +A F  +D A  VF  +   +  +WN ++ A    +     A+ LF++M E+      
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKDVVSWNAMV-AGYSQIGRFEDAVRLFEQMQEEKIKMDV 330

Query: 129 ----------------------------GNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
                                         + P++ T    L  CA + A   GK+ H +
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 161 -------IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAF 211
                  + K G   +  + N LI  YA C  +D+A  +FD++   ER +V+W VMI  +
Sbjct: 391 AIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 212 VQFGEFDSALKLFRRMQILFE------PDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            Q G+ + AL+L   M   FE      P+ +T      ACA LA LS+G   HAY LR+ 
Sbjct: 451 SQHGDANKALELLSEM---FEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQ 507

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            +++   + V+N LIDMY KCG +  AR VF++M +++  +W S++ G+ +HG  E AL 
Sbjct: 508 QNAV--PLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALG 565

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+ +     F  + +T + VL AC+H GM+ +G +YF+ M  ++ ++P  EHY CLVDL
Sbjct: 566 IFEEMR-RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDL 624

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG ++ AL L+  MPM+P  V+W +LL +CC+ H  V L E  AK++ E       G
Sbjct: 625 LGRAGRLNAALRLIEEMPMEPPPVVWVALL-SCCRIHGKVELGEYAAKKITELASN-NDG 682

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            Y LLS +YA+A RW DV  +R LM  KG+ K PGCS +E       FF GD +HP  K+
Sbjct: 683 SYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKE 742

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           IY  L    +++K  GY P+ +  A+ D  D+ K   L  HSE+LA+A GIL    G  I
Sbjct: 743 IYQVLSDHMQRIKDIGYVPE-TGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAI 801

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+ KNLRVC DCH     +SRI + EII+RD +RFHHFK+G CSC  YW
Sbjct: 802 RITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 197/421 (46%), Gaps = 57/421 (13%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTW 101
           +CK++SQ+K IH + L   +   + T  + S  I     +      R F    +   + W
Sbjct: 37  KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRF-PPSDAGVYHW 95

Query: 102 NTLIRACARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           N+LIR+   +  A     +  L   +    +  PD +TFPF  KAC  + +   G  +HA
Sbjct: 96  NSLIRSYGNNGRANKCLSSFCLMHSL----SWTPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
                G +S+V++ N+L+  Y+ CG L  A KVFD M    +VSWN +I+++ + G+   
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 220 ALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           AL++F +M  +  F PD  T  ++   CA + T SLG   H + +      ++ ++ V N
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAV---TSEMIQNMFVGN 268

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE--- 334
            L+DMY K G +D A  VF +MP +D+ SWN+++ G++  GR E A++ F+++  E+   
Sbjct: 269 CLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKM 328

Query: 335 -------------------------------SFSPNSITFVGVLSACNHRGMVSEGRDY- 362
                                             PN +T + VLS C   G +  G++  
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 363 -------FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSL 414
                   D+  N +    ++ +   L+D+ A+   +D A  +  ++ P + D V W  +
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQ--LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVM 446

Query: 415 L 415
           +
Sbjct: 447 I 447


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 329/581 (56%), Gaps = 21/581 (3%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPN 97
           SSL E  S+S  KQIH  A++T          + + +I   S         V +   N +
Sbjct: 434 SSLPEGLSLS--KQIHVHAIKT---NNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFD 488

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
              WN ++    +S D   + + LF  M +QG    D  T    LK C +LFA +QGKQ 
Sbjct: 489 LVAWNAMMSGYTQSHDGH-KTLELFALMHKQGE-RSDDFTLATVLKTCGFLFAINQGKQV 546

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           HA+  K G   D+++++ ++  Y  CG +  A   FD++     V+W  +I   ++ GE 
Sbjct: 547 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEE 606

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLV 275
           + AL +F +M+++   PD +T  ++  A + L  L  G   HA  L+ +C     +D  V
Sbjct: 607 ERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNC----TSDPFV 662

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             SL+DMY KCGS+D A  +F+ +   ++T+WN++++G A HG  + AL+ F ++   ES
Sbjct: 663 GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQM---ES 719

Query: 336 FS--PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ +TF+GVLSAC+H G+VSE   Y   M  +Y I P +EHY CL D L RAG + 
Sbjct: 720 LGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVK 779

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA +L+ +M M+  A ++R+LL A C+        + VA +++E E  + S  YVLLS +
Sbjct: 780 EAENLIDSMSMEASASMYRTLL-AACRVQGDTETGKRVATKLLELEP-LDSSAYVLLSNM 837

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA+A +W+++ L R +M    V K+PG S IE+    H F   D S+PQT+ IY  +  +
Sbjct: 838 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDM 897

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
              +K  GY P+ +   +VD  ++ K+ +L  HSE+LA+A G+L+  P  PIRV KNLRV
Sbjct: 898 IRDIKQEGYVPE-TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRV 956

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           C DCH   K IS++++ EI++RD  RFH FKDG CSC DYW
Sbjct: 957 CGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F  M+E  ++  D+ TF   L     L + + G+Q H    K GL   + ++NSLI+ Y 
Sbjct: 310 FMDMVES-DLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYC 368

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTF 238
               + LA  VF+NM ER L+SWN +I    Q      A+ LF  MQ+L    +PD YT 
Sbjct: 369 KLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF--MQLLRCGLKPDHYTM 426

Query: 239 QSITSACAGLAT-LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
            S+  A + L   LSL    H + ++  +   V D  V+ +LID Y +   +  A  +F 
Sbjct: 427 TSVLKAASSLPEGLSLSKQIHVHAIKTNN---VADSFVSTALIDAYSRNRCMKEAEVLF- 482

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
                DL +WN+++ G+         L+ F  L+ ++    +  T   VL  C     ++
Sbjct: 483 GRNNFDLVAWNAMMSGYTQSHDGHKTLELF-ALMHKQGERSDDFTLATVLKTCGFLFAIN 541

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +G+      I       +    G L D+  + G++  A     ++P+ PD V W +L+  
Sbjct: 542 QGKQVHAYAIKSGYDLDLWVSSGIL-DMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISG 599

Query: 418 C 418
           C
Sbjct: 600 C 600



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 10/196 (5%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK  HA I       + ++ N+LI  Y+ CG L  A +VFD M ER LVSWN ++ A+ Q
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 214 FGE-----FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             E        A  LFR + Q +      T   +   C     +      H Y    C  
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA---CKI 181

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L  D  V  +L+++Y K G +   R +FE MP RD+  WN ++  +   G  E A+   
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID-L 240

Query: 328 DRLVVEESFSPNSITF 343
                     PN IT 
Sbjct: 241 SSAFHTSGLHPNEITL 256



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 21/177 (11%)

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   HA IL   ++      LVNN LI MY KCGSL  AR+VF+ MP+RDL SWNSI
Sbjct: 62  LMLGKCTHARILALEENP--ERFLVNN-LISMYSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 311 ILGFA------LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
           +  +A      +    EA L +  R++ ++    + +T   +L  C H G V     +  
Sbjct: 119 LAAYAQSSEGVVENVKEAFLLF--RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESF-- 174

Query: 365 VMINEYNITPVLEH----YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              + Y     L+      G LV++  + G + E   L   MP + D V+W  +L A
Sbjct: 175 ---HGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA 227



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 7/178 (3%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K  HA+ L  AL +  +  L+ + I  ++    L YA RVF ++   +  +WN+++ A A
Sbjct: 66  KCTHARIL--ALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123

Query: 110 RS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           +S    V+   +A +LF R++ Q  V   + T    LK C +       +  H +  K G
Sbjct: 124 QSSEGVVENVKEAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIG 182

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
           L  D ++  +L++ Y   G +     +F+ M  R +V WN+M+ A+++ G  + A+ L
Sbjct: 183 LDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 240


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/618 (34%), Positives = 333/618 (53%), Gaps = 46/618 (7%)

Query: 3   VAIVQGGPPTPQTHSH-SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALR 58
            A+V G       H     F + R EG   N  +  S LT C S+S      Q+H   +R
Sbjct: 209 TAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR 268

Query: 59  TALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ 117
           +        + + S ++  ++   DL  A R+   +E  +  +WN++I  C R      +
Sbjct: 269 SGFGAN---VFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQ-GLGEE 324

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+ LF R++   ++  D+ T+P  L   +++         H+ I K G  +   +NN+L+
Sbjct: 325 ALSLF-RIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALV 383

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236
             YA  G+ D A  VF+ M ++ ++SW  ++   V  G ++ AL+LF  M+I+   PD  
Sbjct: 384 DMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQI 443

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
              ++ SACA L  L  G   HA  L+     L + + V+NSL+ MY KCG ++ A +VF
Sbjct: 444 VIAAVLSACAELTVLEFGKQVHANFLKS---GLGSSLSVDNSLVSMYAKCGCIEDANKVF 500

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           +SM  +D+ +W ++I+G+A +GR                               +H G+V
Sbjct: 501 DSMEIQDVITWTALIVGYAQNGRGR-----------------------------DHAGLV 531

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
             GR YF  M   Y I P  EHY C++DLL R+G + EA  L++ M ++PDA +W++LL 
Sbjct: 532 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALL- 590

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           A C+ H +V L E  A  + E E    +  YVLLS +Y++A +W +    R+LM  +GV+
Sbjct: 591 AACRVHGNVELGERAANNLFELEPKN-AVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVS 649

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           KEPGCS IE+    H F + D SHP+T +IY  +D I   +K  GY PD +  A+ D  +
Sbjct: 650 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMN-FALHDMDE 708

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
           +GK+  L  HSE+LA+A G+L + PG PIR+FKNLR+C DCH   K +S +F+  +I+RD
Sbjct: 709 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 768

Query: 597 RARFHHFKDGSCSCMDYW 614
              FHHF++G+CSC DYW
Sbjct: 769 SNCFHHFREGACSCSDYW 786



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 184/390 (47%), Gaps = 26/390 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +LS+L++C  +       A+ L   +P + +     + I  +A+   L+ A ++FY+   
Sbjct: 47  VLSNLSKCGRVDD-----ARKLFDVMPDRDECSW-NTMIGAYANSGRLNEARKLFYETPI 100

Query: 96  PNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            +  TW++LI   C    D   +A+ LF  M  +G   P++ T+   L+ C+      +G
Sbjct: 101 RSCITWSSLISGYCRYGCDV--EALELFWEMQYEGE-RPNQFTWGSVLRVCSMYVLLEKG 157

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQ 213
           KQ HAH  K    S+ ++   L+  YA C  +  A  +F+   + R+ V W  M+  + Q
Sbjct: 158 KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQ 217

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+   A++ FR M+    E + +TF SI +AC  ++    G   H  I+R        +
Sbjct: 218 NGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR---SGFGAN 274

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V ++L+DMY KCG L  AR++ E+M   D  SWNS+I+G    G  E AL  F R++ 
Sbjct: 275 VFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLF-RIMH 333

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLAR 388
                 +  T+  VL   N    V + R+   V  +   +    E Y      LVD+ A+
Sbjct: 334 LRHMKIDEFTYPSVL---NCFSFVMDMRNAMSV--HSLIVKTGFEAYKLVNNALVDMYAK 388

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G  D A  +   M  K D + W SL+  C
Sbjct: 389 RGYFDYAFDVFEKMTDK-DVISWTSLVTGC 417



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 130/317 (41%), Gaps = 39/317 (12%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           + F+ K C  L            +   G V     +N ++   + CG +D A K+FD M 
Sbjct: 9   YTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMP 68

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLF-------------------------RRMQILFE 232
           +R   SWN MI A+   G  + A KLF                           +++ +E
Sbjct: 69  DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWE 128

Query: 233 -------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                  P+ +T+ S+   C+    L  G   HA+ ++       ++  V   L+DMY K
Sbjct: 129 MQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIK---TQFDSNAFVVTGLVDMYAK 185

Query: 286 CGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           C  +  A  +FE  P KR+   W +++ G++ +G    A++ F R +  E    N  TF 
Sbjct: 186 CKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECF-RDMRGEGIECNQFTFP 244

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +L+AC        G      ++       V      LVD+ ++ G++  A  ++  M +
Sbjct: 245 SILTACGSISACGFGAQVHGCIVRSGFGANVFVG-SALVDMYSKCGDLSNARRMLETMEV 303

Query: 405 KPDAVIWRSLLDACCKK 421
             D V W S++  C ++
Sbjct: 304 D-DPVSWNSMIVGCVRQ 319


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/541 (40%), Positives = 324/541 (59%), Gaps = 22/541 (4%)

Query: 70  IYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           I + +IH +A+  DL  A ++F    + +  +WN +I    +  +     +V F RM   
Sbjct: 37  IVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMV-FDRM--- 92

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
             V  D  ++   +   A +    + K+    + +R LVS     NS++  +  CG+++ 
Sbjct: 93  --VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVS----WNSMLSGFVKCGNVEE 146

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A  +F  M  R +VSWN M+  + Q G+ + AL LF +M+ +  +P   T  S+ SACA 
Sbjct: 147 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 206

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L  G+  H YI    D+ +  + +V  +L+DMY KCG + +A QVF +M  +D+ +W
Sbjct: 207 LGALDKGLHLHTYI---NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAW 263

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N+II G A+HG  + A + F  +  E S  PN ITFV +LSAC+H GMV EG+   D M 
Sbjct: 264 NTIIAGMAIHGHVKEAQQLFKEMK-EASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS 322

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
           + Y I P +EHY C++DLLARAG ++EA+ L+  MPM+P+     +LL  C + H +  L
Sbjct: 323 SSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGC-RIHGNFEL 381

Query: 428 SEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
            E V K++I  +   C SG Y+LLS +YA+A++W+D   VR LM   G++K PG S IE+
Sbjct: 382 GEMVGKRLINLQP--CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 439

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR-GYTPDYSQAAMVDELDDGKQSSLRL 545
            G+ H F AGD SHP++ +IY  L+ I  +LKS  GY+ D     ++D  ++ K+ +L +
Sbjct: 440 KGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNV-LLDMEEEDKEHALAV 498

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G+L+L     IR+ KNLRVC+DCH VTKLIS+++  EIIVRDR RFHHF+D
Sbjct: 499 HSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFED 558

Query: 606 G 606
           G
Sbjct: 559 G 559



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 147/302 (48%), Gaps = 14/302 (4%)

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+PF +KAC        G   H H+ K G   D YI NSLIH YA+   L  A ++F   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
            +R +VSWN MID +V+ GE      +F RM      D  ++ +I +  A +  +     
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCR---DVISWNTIINGYAIVGKIDEAK- 117

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
                 R  D     +++  NS++  + KCG+++ A  +F  MP RD+ SWNS++  +A 
Sbjct: 118 ------RLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQ 171

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
            G+   AL  FD++       P   T V +LSAC H G + +G  +    IN+  I    
Sbjct: 172 CGKPNEALALFDQMRA-VGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNS 229

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
                LVD+ A+ G I  A  + + M  K D + W +++ A    H  V  ++++ K++ 
Sbjct: 230 IVGTALVDMYAKCGKISLATQVFNAMESK-DVLAWNTII-AGMAIHGHVKEAQQLFKEMK 287

Query: 437 ES 438
           E+
Sbjct: 288 EA 289


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 324/571 (56%), Gaps = 13/571 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +  LK++H  +L+      +  L+  + +  +A    L YA RVF+ I +    +WN LI
Sbjct: 161 LPSLKELHCYSLKQEFV--YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 218

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A+S D +       Q  I    +LPD  T    L AC+ L +   GK+ H  I +  
Sbjct: 219 GGHAQSNDPRLSLDAHLQMKIS--GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 276

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L  D+++  S++  Y  CG L     +FD M ++SLVSWN +I  ++Q G  D AL +FR
Sbjct: 277 LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 336

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           +M +   +  G +   +  AC+ L +L LG  AHAY L+H    L  D  +  SLIDMY 
Sbjct: 337 QMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL---LEDDAFIACSLIDMYA 393

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K GS+  + +VF  + ++   SWN++I+G+ +HG A+ A+K F+ +      +P+ +TF+
Sbjct: 394 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ-RTGHNPDDLTFL 452

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN-MP 403
           GVL+ACNH G++ EG  Y D M + + + P L+HY C++D+L RAG +D+AL +V+  M 
Sbjct: 453 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 512

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
            + D  IW+SLL +C + H ++ + E+VA ++ E E       YVLLS +YA   +W DV
Sbjct: 513 EEADVGIWKSLLSSC-RIHQNLEMGEKVAAKLFELEPEKPEN-YVLLSNLYAGLGKWEDV 570

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR+ M +  + K+ GCS IE++     F  G+      ++I     +++ K+   GY 
Sbjct: 571 RKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYR 630

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD + +   D  ++ K   LR HSE+LA+  G++    G  IRV+KNLR+C DCH   KL
Sbjct: 631 PD-TMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKL 689

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++   EI+VRD  RFHHFK+G CSC DYW
Sbjct: 690 ISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 186/390 (47%), Gaps = 20/390 (5%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           ++L++ L  C    ++   K +H  A++  L ++   +L  + +  ++    +  A  +F
Sbjct: 43  ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE--LVLNNALMDMYSKCGCITNAQMIF 100

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
               N N  +WNT++   +   D      VL Q +    +V  D+ T   A+  C +   
Sbjct: 101 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 160

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
               K+ H +  K+  V +  + N+ +  YA CG L  A +VF  +  +++ SWN +I  
Sbjct: 161 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 220

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
             Q  +   +L    +M+I    PD +T  S+ SAC+ L +L LG   H +I+R+    L
Sbjct: 221 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW---L 277

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D+ V  S++ +Y  CG L   + +F++M  + L SWN++I G+  +G  + AL  F +
Sbjct: 278 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 337

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH---YGC-LVDL 385
           +V+        I+ + V  AC+    +  GR+      + Y +  +LE      C L+D+
Sbjct: 338 MVL-YGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAFIACSLIDM 391

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            A+ G+I ++  + + +  K  A  W +++
Sbjct: 392 YAKNGSITQSSKVFNGLKEKSTAS-WNAMI 420



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 9/279 (3%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN--VLPDKHTFPFALKACAYLFAFSQG 154
           N  +WN++IR  + +  ++   ++L + M E G+   +PD  T    L  CA       G
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  H    K  L  ++ +NN+L+  Y+ CG +  A  +F     +++VSWN M+  F   
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 215 GEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           G+      + R+M    E    D  T  +    C   + L      H Y L+      V 
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLK---QEFVY 178

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           + LV N+ +  Y KCGSL  A++VF  +  + + SWN++I G A       +L    ++ 
Sbjct: 179 NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK 238

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           +     P+S T   +LSAC+    +  G++    +I  +
Sbjct: 239 I-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 276


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 341/600 (56%), Gaps = 20/600 (3%)

Query: 22  NNNRNEGSF-----NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           ++N  EGS+       +++LL   T  K + Q + +HA  L++    +H  ++  + +  
Sbjct: 47  SSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIF--RHDIVMGNTLLNM 104

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L+ A +VF ++   +  TW TLI   ++  D    A++ F +M+  G   P++ 
Sbjct: 105 YAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH-DRPCDALLFFNQMLRFG-YSPNEF 162

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    +KA A       G Q H    K G  S+V++ ++L+  Y   G +D A  VFD +
Sbjct: 163 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL 222

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
             R+ VSWN +I    +    + AL+LF+ M +  F P  +++ S+  AC+    L  G 
Sbjct: 223 ESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGK 282

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           W HAY+++  +  LV      N+L+DMY K GS+  AR++F+ + KRD+ SWNS++  +A
Sbjct: 283 WVHAYMIKSGE-KLVA--FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG  + A+ +F+ +       PN I+F+ VL+AC+H G++ EG  Y+++M  +  I P 
Sbjct: 340 QHGFGKEAVWWFEEMR-RVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPE 397

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
             HY  +VDLL RAG+++ AL  +  MP++P A IW++LL+AC + H +  L    A+ V
Sbjct: 398 AWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC-RMHKNTELGAYAAEHV 456

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
            E +     G +V+L  +YAS  RWND   VRK M + GV KEP CS +EI+   H F A
Sbjct: 457 FELDPDD-PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVA 515

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIAL 554
            D  HPQ ++I    + +  K+K  GY PD S   + VD+ +  ++ +L+ HSE++A+A 
Sbjct: 516 NDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE--REVNLQYHSEKIALAF 573

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +LN  PG  I + KN+RVC DCH   KL S++   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 574 ALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/585 (35%), Positives = 326/585 (55%), Gaps = 17/585 (2%)

Query: 35  SLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           ++ S +  C  +  LK    +H   L   L   +  L++ S +  ++   D++ A  VFY
Sbjct: 233 TMTSLIQACGGIGNLKLGKCMHGYVLGLGLG--NDILVLTSFVDMYSKMGDIESARWVFY 290

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   N  +WN +I  C R+     ++  LF R++       D  T    L+ C+   + 
Sbjct: 291 KMPTRNLVSWNAMISGCVRN-GLVGESFDLFHRLVRSSGGF-DLTTIVSLLQGCSQTASL 348

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           + GK  H     R   S++ ++ +++  Y+ CG L  A  VF+ M +R++++W  M+   
Sbjct: 349 ATGKILHGCAI-RSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGL 407

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G  + AL+LF +MQ      +  TF S+  +CA L +L  G   H ++ R       
Sbjct: 408 AQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRL---GFA 464

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFE-SMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            D++   +L+DMY KCG +++A ++F      +D+  WNS+I G+ +HG    A+  + +
Sbjct: 465 FDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHK 524

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++ EE   PN  TF+ +LSAC+H  +V +G   F+ M  ++NI P+ +HY CLVDLL+RA
Sbjct: 525 MI-EEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRA 583

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G  +EA  L+  MP +P   +  +LL  C + H ++ L  + + +++  +  +  G+Y++
Sbjct: 584 GRFEEAQALIEKMPFQPGTAVLEALLSGC-RTHKNINLGIQTSDKLLALDA-MNPGIYIM 641

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YA ARRW+ V  +R LM ++G+ K PG S +E     H FFAGD SHP  ++IY F
Sbjct: 642 LSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHF 701

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L+ +   +++ GY PD S   + D  ++ K   L  HSERLAIA G+L    G  IR+ K
Sbjct: 702 LESLRSAVETSGYVPDTS-CVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITK 760

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH VTK IS+I   EIIVRD  RFHHF +G CSC DYW
Sbjct: 761 NLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 203/443 (45%), Gaps = 24/443 (5%)

Query: 23  NNRNEGSFNNHSSL----LSSLTEC-KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH- 76
           N   +G FN   ++    LS L E  K++  +K  HAQ +  +L        + ++++  
Sbjct: 17  NPLKDGQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQ---FVATKLVKA 73

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    L+ A  VF Q   P     N ++  C      + +  +    ++   N+  D  
Sbjct: 74  YSDLRSLEAARYVFDQFFQPKGLLCNAML--CGYLQSGRYRETLELFGLMRSRNLEVDSC 131

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +  FALKACA    +  G +  +   ++G+  + ++ +S+I F    G +  A +VFD M
Sbjct: 132 SCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGM 191

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGM 255
             + +V WN +I  +VQ G FD A +LF  M     +P   T  S+  AC G+  L LG 
Sbjct: 192 PNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGK 251

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y+L      L  D+LV  S +DMY K G ++ AR VF  MP R+L SWN++I G  
Sbjct: 252 CMHGYVL---GLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCV 308

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G    +   F RL V  S   +  T V +L  C+    ++ G+      I  +    +
Sbjct: 309 RNGLVGESFDLFHRL-VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLI 367

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK-HASVVLSEEVAKQ 434
           L     +VDL ++ G++ +A  + + M  + + + W ++L    +  HA   L      Q
Sbjct: 368 LST--AIVDLYSKCGSLKQATFVFNRMKDR-NVITWTAMLVGLAQNGHAEDALRLFAQMQ 424

Query: 435 VIESEGGICSGVYVLLSRVYASA 457
               E GI +     +S V++ A
Sbjct: 425 ----EEGIAANSVTFVSLVHSCA 443


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 331/574 (57%), Gaps = 17/574 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTL 104
           + QL+Q+HA  + T   +    L   +++I  A  A  + Y   +F  +  P+ F +N++
Sbjct: 22  VKQLQQVHAHLIVTGYGRSRSLL---TKLITLACSARAIAYTHLLFLSVPLPDDFLFNSV 78

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I++ ++     P   V + R +   NV P  +TF   +K+CA L A   GK  H H    
Sbjct: 79  IKSTSKL--RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVS 136

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   D Y+  +L+ FY+ CG ++ A +VFD M E+S+V+WN ++  F Q G  D A+++F
Sbjct: 137 GFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVF 196

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
            +M +  FEPD  TF S+ SACA    +SLG W H YI+      L  +V +  +LI++Y
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYII---SEGLDLNVKLGTALINLY 253

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            +CG +  AR+VF+ M + ++ +W ++I  +  HG  + A++ F+++  +    PN++TF
Sbjct: 254 SRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTF 313

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           V VLSAC H G+V EGR  +  M   Y + P +EH+ C+VD+L RAG +DEA   +  + 
Sbjct: 314 VAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLD 373

Query: 404 MKPDAV---IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
               A    +W ++L A CK H +  L  E+AK++I  E     G +V+LS +YA + + 
Sbjct: 374 ATGKATAPALWTAMLGA-CKMHRNYDLGVEIAKRLIALEPD-NPGHHVMLSNIYALSGKT 431

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
           ++V  +R  M    + K+ G S IE++   + F  GD SH +T +IY +L+ +  + K  
Sbjct: 432 DEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEI 491

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY P  S+  M    ++ K+ +LR HSE+LA+A G+L     + I + KNLR+C+DCH  
Sbjct: 492 GYAP-VSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLK-TVDVAITIVKNLRICEDCHSA 549

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K IS + N +I VRD+ RFHHF++GSCSC+DYW
Sbjct: 550 FKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/511 (39%), Positives = 301/511 (58%), Gaps = 15/511 (2%)

Query: 108 CARSVDAKPQAIVLFQRMIEQGNV---LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           C R+ +A  Q      R+ +   V   +P + T  F   +  + +A S    +   +F+R
Sbjct: 45  CTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSF--NSMIHGYAVSGDVGSAQRLFER 102

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
            L        S++  +   G ++ A +VF+ M ER LVSWN MI   V       AL LF
Sbjct: 103 VLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLF 162

Query: 225 R-RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           R  M+  F P+  T  S+ SAC G   L  G W H ++ +     L  D  +  +L+DMY
Sbjct: 163 RWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKK---RLRWDEFLGTALVDMY 219

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG++++A +VF  +  R+  +WN++I G A++G +  AL  F ++ +  + +P+ +TF
Sbjct: 220 AKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTF 279

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           VGVL AC+H G V  G+++F  +  +Y +  +LEHY C+VDLLAR+G++ EA  L++ MP
Sbjct: 280 VGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMP 339

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           MKPD V+WR+LL   C+ H +V    ++A+ VI      CSG +VLLS +YA+  RWN V
Sbjct: 340 MKPDVVVWRALLGG-CRLHKNV----KMAENVISEMEATCSGDHVLLSNLYAAVGRWNGV 394

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR+ M  KG+ K PGCSS+E+DG  HEF +GD SHP    I+  L  I  +++  GY 
Sbjct: 395 EDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYV 454

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
            + ++    D  D+ K+ +L  HSE+LAIA G++   P   IR+ KNLR C DCH   KL
Sbjct: 455 TETAE-VFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKL 513

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +S+I++ EI+VRDRARFHHF+ G+CSC D+W
Sbjct: 514 VSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 11/257 (4%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  F    D++ A RVF ++   +  +WN +I  C  +     +A+ LF+ M+E+G V
Sbjct: 113 SMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGN-RLPVEALCLFRWMMEEGFV 171

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            P++ T    L AC    A   GK  H  + K+ L  D ++  +L+  YA CG ++LA +
Sbjct: 172 -PNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALE 230

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLA 249
           VF  +  R+  +WN MI+     G    AL +FR+M++     PD  TF  +  AC+   
Sbjct: 231 VFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAG 290

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNN--SLIDMYCKCGSLDIARQVFESMP-KRDLTS 306
            +  G   H Y +         ++++ +   ++D+  + G L  A ++   MP K D+  
Sbjct: 291 FVDAGK-EHFYTI---PQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVV 346

Query: 307 WNSIILGFALHGRAEAA 323
           W +++ G  LH   + A
Sbjct: 347 WRALLGGCRLHKNVKMA 363


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/623 (35%), Positives = 326/623 (52%), Gaps = 48/623 (7%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF 87
           G+ +  ++L++   +C+S    +   A+ +   +P +   L   + ++ +    D+  A 
Sbjct: 192 GALSVCNALVALYMKCESPEATRD--ARKVLDEMPNK-DDLTWTTMVVGYVRRGDVGAAR 248

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF +++      WN +I     S  A  +A  LF+RM+ +  V  D+ TF   L ACA 
Sbjct: 249 SVFEEVDGKFDVVWNAMISGYVHSGMAV-EAFELFRRMVLE-RVPLDEFTFTSVLSACAN 306

Query: 148 LFAFSQGKQAHAHIFK--RGLVSD--VYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           +  F+ GK  H  I +     V +  + +NN+L+ FY+ CG++ +A ++FDNM  + +VS
Sbjct: 307 VGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS 366

Query: 204 WN-------------------------------VMIDAFVQFGEFDSALKLFRRMQIL-F 231
           WN                               VM+  +V  G  + ALKLF +M+    
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV 426

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           +P  YT+    +AC  L  L  G   H +I++             N+LI MY +CG++  
Sbjct: 427 KPCDYTYAGAIAACGELGALKHGKQLHGHIVQL---GFEGSNSAGNALITMYARCGAVKE 483

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           A  +F  MP  D  SWN++I     HG    AL+ FDR+V E  + P+ I+F+ VL+ACN
Sbjct: 484 AHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY-PDRISFLTVLTACN 542

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           H G+V EG  YF+ M  ++ I P  +HY  L+DLL RAG I EA  L+  MP +P   IW
Sbjct: 543 HSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIW 602

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471
            ++L  C +    + L    A Q+ +       G Y+LLS  Y++A  W D   VRKLM 
Sbjct: 603 EAILSGC-RTSGDMELGAHAADQLFKMTPQH-DGTYILLSNTYSAAGCWVDAARVRKLMR 660

Query: 472 DKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
           D+GV KEPGCS IE     H F  GDT HP+  ++Y FL+++  K++  GY PD ++  +
Sbjct: 661 DRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPD-TKVVL 719

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
            D     K+  L  HSERLA+  G+LNL PG  + V KNLR+C DCH     +S+    E
Sbjct: 720 HDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGRE 779

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           I+VRD  RFHHFKDG CSC +YW
Sbjct: 780 IVVRDVRRFHHFKDGECSCGNYW 802



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 197/477 (41%), Gaps = 113/477 (23%)

Query: 46  MSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIENPNSFT 100
           +  L+ +HA+ L +AL    P  H TL    R+IH  + + DL  A  +F     P S T
Sbjct: 37  LRALRCLHARLLTSALLHAPPHPHLTL----RLIHLYTLSRDLPAAATLFCADPCPVSAT 92

Query: 101 -------------------------------WNTLIRACARSVDAKPQAIVLFQRMIEQG 129
                                           N +I A AR+  A P A+ +F+ ++  G
Sbjct: 93  SLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAP-AVAVFRSLLASG 151

Query: 130 NVLPDKHTFPFALKACAYL--FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---- 183
           ++ PD ++F   L A  +L   +     Q H  + K G    + + N+L+  Y  C    
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 184 ------------------------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
                                         G +  A  VF+ +  +  V WN MI  +V 
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271

Query: 214 FGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    A +LFRRM +   P D +TF S+ SACA +   + G   H  I+R   + +   
Sbjct: 272 SGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEA 331

Query: 273 VL-VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA---------------- 315
            L VNN+L+  Y KCG++ +AR++F++M  +D+ SWN+I+ G+                 
Sbjct: 332 ALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 316 --------------LHGR-AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
                         +HG  AE ALK F+++   E+  P   T+ G ++AC   G +  G+
Sbjct: 392 YKNELSWMVMVSGYVHGGFAEDALKLFNKM-RSENVKPCDYTYAGAIAACGELGALKHGK 450

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                ++ +            L+ + AR G + EA  +   MP   D+V W +++ A
Sbjct: 451 QLHGHIV-QLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISA 505



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 127/302 (42%), Gaps = 50/302 (16%)

Query: 174 NSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
            SL+  YA+   L  A   FD +    R  V  N +I A+ +      A+ +FR +    
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 231 -FEPDGYTFQSITSACAGLATLSLGMWA--HAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
              PD Y+F ++ SA   L  +S+   A  H  +L+      ++   V N+L+ +Y KC 
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALS---VCNALVALYMKCE 208

Query: 288 SLDI---ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD---------------- 328
           S +    AR+V + MP +D  +W ++++G+   G   AA   F+                
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISG 268

Query: 329 --------------RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNIT 373
                         R +V E    +  TF  VLSAC + G+ + G+     +I  + N  
Sbjct: 269 YVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFV 328

Query: 374 P--VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL----DACCKKHASVVL 427
           P   L     LV   ++ GNI  A  +  NM +K D V W ++L    ++ C   A  V 
Sbjct: 329 PEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTILSGYVESSCLDKAVEVF 387

Query: 428 SE 429
            E
Sbjct: 388 EE 389


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 316/533 (59%), Gaps = 10/533 (1%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A R+F  + + +S TW T++    ++   + +A+ +F+RM  QG +  D++TF   L
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQN-GLESEALEIFRRMRFQG-IAIDQYTFGSIL 279

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC  L A  QGKQ HA+I +     +V++ ++L+  Y+ C  + LA  VF  M  ++++
Sbjct: 280 TACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNII 339

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  +I  + Q G  + A+++F  MQ    +PD YT  S+ S+CA LA+L  G   H   
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLA 399

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L      L+  + V+N+L+ +Y KCGS++ A ++F+ M   D  SW +++ G+A  GRA+
Sbjct: 400 LVS---GLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAK 456

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             +  F++++ +    P+ +TF+GVLSAC+  G V +GR YF  M  ++ I P+ +HY C
Sbjct: 457 ETIDLFEKMLAK-GVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTC 515

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           ++DL +R+G + EA   +  MPM PDA+ W +LL AC +    + + +  A+ ++E +  
Sbjct: 516 MIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSAC-RLRGDMEIGKWAAENLLEIDPQ 574

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
                YVLL  ++A+  +WN+V  +R+ M D+ V KEPGCS I+     H F A D SHP
Sbjct: 575 -NPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHP 633

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
            +K IY  L+ ++ K+   GY PD S + + D  D  K   +  HSE+LAIA G++ +  
Sbjct: 634 CSKGIYEKLEWLNSKMLEEGYKPDVS-SVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQ 692

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            MPIR+ KNLRVC DCH  TK IS+I   +I+VRD  RFH F DG CSC D+W
Sbjct: 693 EMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 202/471 (42%), Gaps = 81/471 (17%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           +H   LRT LP    T L+   +  +        A RVF  + +PN FT+N L+   A +
Sbjct: 27  LHCVILRT-LPHPPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHA 85

Query: 112 V------------------------------DAKPQAIVLFQRMIE-QGNVLPDKHTFPF 140
                                           +  QA+ ++  +++   +V P + T   
Sbjct: 86  RLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMST 145

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS------------------ 182
            + A + L   + GKQ H  I + G  ++ ++ + L+  YA                   
Sbjct: 146 MVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKN 205

Query: 183 -------------CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
                        C  ++ A ++F+ M +R  ++W  M+  F Q G    AL++FRRM+ 
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRF 265

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                D YTF SI +AC  L+ L  G   HAYI+R        +V V ++L+DMY KC S
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR---TRYDDNVFVGSALVDMYSKCRS 322

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           + +A  VF  M  +++ SW ++I+G+  +G +E A++ F  +   +   P+  T   V+S
Sbjct: 323 IKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEM-QRDGIDPDDYTLGSVIS 381

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARAGNIDEALHLVSNMPM 404
           +C +   + EG  +  +      +   L HY      LV L  + G+I++A  L   M  
Sbjct: 382 SCANLASLEEGAQFHCLA-----LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF 436

Query: 405 KPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
             D V W +L+       +   ++ L E++  + ++ +G    GV    SR
Sbjct: 437 H-DQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSR 486



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 146/315 (46%), Gaps = 15/315 (4%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLI 70
           ++ +  IF   R +G   +  +  S LT C ++S L   KQIHA  +RT   +    + +
Sbjct: 253 ESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT---RYDDNVFV 309

Query: 71  YSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
            S ++  ++    +  A  VF ++   N  +W  LI    ++     +A+ +F  M   G
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQN-GCSEEAVRVFSEMQRDG 368

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            + PD +T    + +CA L +  +G Q H      GL+  + ++N+L+  Y  CG ++ A
Sbjct: 369 -IDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
           +++FD M     VSW  ++  + QFG     + LF +M     +PDG TF  + SAC+  
Sbjct: 428 HRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRA 487

Query: 249 ATLSLGM-WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTS 306
             +  G  + H+      DH +V        +ID+Y + G L  A +  + MP   D   
Sbjct: 488 GFVEKGRSYFHSM---QKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIG 544

Query: 307 WNSIILGFALHGRAE 321
           W +++    L G  E
Sbjct: 545 WGTLLSACRLRGDME 559



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 178/428 (41%), Gaps = 65/428 (15%)

Query: 154 GKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           G+ A A  +F      +++  N+L+   A    L     +F +M +R +VS+N +I  F 
Sbjct: 55  GRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFS 114

Query: 213 QFGEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR------ 263
             G    A++++  +        P   T  ++  A + L   +LG   H  ILR      
Sbjct: 115 GGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGAN 174

Query: 264 ----------HCDHSLVTD------------VLVNNSLIDMYCKCGSLDIARQVFESMPK 301
                     +   SLV D            V++ N++I    +C  ++ AR++FE M  
Sbjct: 175 AFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTD 234

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           RD  +W +++ GF  +G    AL+ F R+   +  + +  TF  +L+AC     + +G+ 
Sbjct: 235 RDSITWTTMVTGFTQNGLESEALEIFRRMRF-QGIAIDQYTFGSILTACGALSALEQGKQ 293

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL----DA 417
               +I       V      LVD+ ++  +I  A  +   M  K + + W +L+      
Sbjct: 294 IHAYIIRTRYDDNVFVG-SALVDMYSKCRSIKLAETVFRRMTCK-NIISWTALIVGYGQN 351

Query: 418 CCKKHASVVLSEEVAKQVIESE----GGICSGVYVLLSRVYASARRWNDVGLVRKLM--- 470
            C + A  V S E+ +  I+ +    G + S    L S       +++ + LV  LM   
Sbjct: 352 GCSEEAVRVFS-EMQRDGIDPDDYTLGSVISSCANLAS--LEEGAQFHCLALVSGLMHYI 408

Query: 471 --TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ---TKQIYGFL------DLID--EKL 517
             ++  VT    C SIE    AH  F   + H Q   T  + G+       + ID  EK+
Sbjct: 409 TVSNALVTLYGKCGSIE---DAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKM 465

Query: 518 KSRGYTPD 525
            ++G  PD
Sbjct: 466 LAKGVKPD 473


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/600 (35%), Positives = 338/600 (56%), Gaps = 17/600 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHK----TLLIYSRII 75
           +F   R EG   +  ++++ +  C   ++L  +H   +     Q+ K     +L  + I 
Sbjct: 118 LFEKMREEGVVPDKVAMVTVVFAC---AKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 174

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    ++ A  +F ++E  N  +W+ +I A       + +A+ LF+ M+  G +LPDK
Sbjct: 175 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR-KALDLFRMMLSSG-MLPDK 232

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    L AC+ L     G+  H  ++K GL  D ++  +L+  Y  C  ++ A  +FD 
Sbjct: 233 ITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDK 292

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLG 254
           M ER LV+W VMI  + + G  + +L LF +M +    PD     ++  ACA L  +   
Sbjct: 293 MPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 352

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
                YI R        DV++  ++IDM+ KCG ++ AR++F+ M ++++ SW+++I  +
Sbjct: 353 RTIDDYIQRK---KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY 409

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
             HG+   AL  F  +++     PN IT V +L AC+H G+V EG  +F +M  +Y++  
Sbjct: 410 GYHGQGRKALDLFP-MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRA 468

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            ++HY C+VDLL RAG +DEAL L+ +M ++ D  +W + L AC + H  VVL+E+ A  
Sbjct: 469 DVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGAC-RTHKDVVLAEKAATS 527

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           ++E +     G Y+LLS +YA+A RW DV   R LM+ + + K PG + IE+D  +H+F 
Sbjct: 528 LLELQPQ-NPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFS 586

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
            GDT+HP++K+IY  L  +  KL+  GY PD +   + D  ++ K   L  HSE+LAIA 
Sbjct: 587 VGDTTHPRSKEIYEMLKSLGNKLELVGYVPD-TNFVLHDVDEELKIGILYSHSEKLAIAF 645

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G++      PIR+ KNLRVC DCH   KL+S I    IIVRD  RFHHFK+G+CSC DYW
Sbjct: 646 GLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 173/343 (50%), Gaps = 21/343 (6%)

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F+ +I  G   PD +T PF ++AC  L     G+  H  ++K GL  D ++  +L+  Y 
Sbjct: 18  FRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYV 76

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            C  ++ A  +FD M ER LV+W VMI  + + G+ + +L LF +M +    PD     +
Sbjct: 77  KCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVT 136

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           +  ACA L  +        YI R        DV++  ++IDMY KCG ++ AR++F+ M 
Sbjct: 137 VVFACAKLGAMHKARIIDDYIQR---KKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 193

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           ++++ SW+++I  +  HG+   AL  F R+++     P+ IT   +L AC+    +  GR
Sbjct: 194 EKNVISWSAMIAAYGYHGQGRKALDLF-RMMLSSGMLPDKITLASLLYACSDLKNLQMGR 252

Query: 361 DYFDVMINEYNITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA- 417
               ++   Y     L+H+ C  LVD+  +   I++A  L   MP + D V W  ++   
Sbjct: 253 LIHHIV---YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER-DLVTWTVMIGGY 308

Query: 418 --CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
             C   + S+VL +++       E G+      +++ V+A A+
Sbjct: 309 AECGNANESLVLFDKM------REEGVVPDKVAMVTVVFACAK 345


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 324/571 (56%), Gaps = 13/571 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +  LK++H  +L+      +  L+  + +  +A    L YA RVF+ I +    +WN LI
Sbjct: 411 LPSLKELHCYSLKQEFV--YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 468

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A+S D +       Q  I    +LPD  T    L AC+ L +   GK+ H  I +  
Sbjct: 469 GGHAQSNDPRLSLDAHLQMKIS--GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 526

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L  D+++  S++  Y  CG L     +FD M ++SLVSWN +I  ++Q G  D AL +FR
Sbjct: 527 LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 586

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           +M +   +  G +   +  AC+ L +L LG  AHAY L+H    L  D  +  SLIDMY 
Sbjct: 587 QMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL---LEDDAFIACSLIDMYA 643

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           K GS+  + +VF  + ++   SWN++I+G+ +HG A+ A+K F+ +      +P+ +TF+
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ-RTGHNPDDLTFL 702

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN-MP 403
           GVL+ACNH G++ EG  Y D M + + + P L+HY C++D+L RAG +D+AL +V+  M 
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 762

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
            + D  IW+SLL +C + H ++ + E+VA ++ E E       YVLLS +YA   +W DV
Sbjct: 763 EEADVGIWKSLLSSC-RIHQNLEMGEKVAAKLFELEPEKPEN-YVLLSNLYAGLGKWEDV 820

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR+ M +  + K+ GCS IE++     F  G+      ++I     +++ K+   GY 
Sbjct: 821 RKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYR 880

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD + +   D  ++ K   LR HSE+LA+  G++    G  IRV+KNLR+C DCH   KL
Sbjct: 881 PD-TMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKL 939

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++   EI+VRD  RFHHFK+G CSC DYW
Sbjct: 940 ISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 11/324 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL +  + K +   ++IH Q +  +   ++  +L    I  +A     D +  VF  + +
Sbjct: 90  LLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 148

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N F WN +I + +R+ +   + +  F  MI   ++LPD  T+P  +KACA +     G 
Sbjct: 149 KNLFQWNAVISSYSRN-ELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H  + K GLV DV++ N+L+ FY + G +  A ++FD M ER+LVSWN MI  F   G
Sbjct: 208 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 216 EFDSALKLFRRMQI-----LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
             + +  L   M        F PD  T  ++   CA    + LG   H + ++     L 
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK---LRLD 324

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            ++++NN+L+DMY KCG +  A+ +F+    +++ SWN+++ GF+  G          ++
Sbjct: 325 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 384

Query: 331 VV-EESFSPNSITFVGVLSACNHR 353
           +   E    + +T +  +  C H 
Sbjct: 385 LAGGEDVKADEVTILNAVPVCFHE 408



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 186/390 (47%), Gaps = 20/390 (5%)

Query: 34  SSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           ++L++ L  C    ++   K +H  A++  L ++   +L  + +  ++    +  A  +F
Sbjct: 293 ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE--LVLNNALMDMYSKCGCITNAQMIF 350

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
               N N  +WNT++   +   D      VL Q +    +V  D+ T   A+  C +   
Sbjct: 351 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 410

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
               K+ H +  K+  V +  + N+ +  YA CG L  A +VF  +  +++ SWN +I  
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 470

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
             Q  +   +L    +M+I    PD +T  S+ SAC+ L +L LG   H +I+R+    L
Sbjct: 471 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW---L 527

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D+ V  S++ +Y  CG L   + +F++M  + L SWN++I G+  +G  + AL  F +
Sbjct: 528 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 587

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH---YGC-LVDL 385
           +V+        I+ + V  AC+    +  GR+      + Y +  +LE      C L+D+
Sbjct: 588 MVL-YGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAFIACSLIDM 641

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            A+ G+I ++  + + +  K  A  W +++
Sbjct: 642 YAKNGSITQSSKVFNGLKEKSTAS-WNAMI 670


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/652 (35%), Positives = 343/652 (52%), Gaps = 80/652 (12%)

Query: 25   RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
            RNE S+   ++++++  +C  +    Q++ +     +  +   +  Y+++        + 
Sbjct: 425  RNEYSW---TTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQV------GRIQ 475

Query: 85   YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM------------------- 125
             A  +F +I NPN   WN +I    ++   K +A  LFQ+M                   
Sbjct: 476  KARLIFDEILNPNVVAWNAIIAGYTQNGMLK-EAKDLFQKMPVKNSASWAAMIAGFVQNE 534

Query: 126  -----------IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
                       + +   +P   +F  AL ACA +     G+  H+   K G   + Y+ N
Sbjct: 535  ESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMN 594

Query: 175  SLIHFYASCGH-------------------------------LDLANKVFDNMLERSLVS 203
             LI  YA CG+                               LD A  VF+ M +R +VS
Sbjct: 595  GLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVS 654

Query: 204  WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
            W  +I A+VQ G  + AL LF  M     +P+  T  S+ SAC  L  + LG   HA I 
Sbjct: 655  WTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIF 714

Query: 263  RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
            +       T + V NSLI MY KCG  D    VFE MP+ DL +WN++++G A +G  + 
Sbjct: 715  KL---GFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKE 770

Query: 323  ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
            A+K F+++ VE    P+ ++F+GVL AC+H G+V EG  +F+ M  +Y I P++ HY C+
Sbjct: 771  AIKIFEQMEVE-GILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCM 829

Query: 383  VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
            VDLL RAG + EA  L+ NMP+KPD+VIW +LL A C+ H +V L + VA+++ +     
Sbjct: 830  VDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGA-CRIHRNVELGQRVAERLFQMTKPK 888

Query: 443  CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
             S  YVLLS ++AS   W+ V  +RKLM D+G+TKEPG S I++    H F  GD +H Q
Sbjct: 889  -SATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQ 947

Query: 503  TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
             ++IY  L       ++ GY PD +   + D  ++ KQ+ L  HSE+LA+  GIL+   G
Sbjct: 948  IEEIYSALKEYYGCFRATGYMPD-TNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNG 1006

Query: 563  MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PI++ KNLR+C DCH   K +S++   +II+RD  RFHHF+DGSCSC DYW
Sbjct: 1007 SPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 180/424 (42%), Gaps = 65/424 (15%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           +LS++T    +  +  +   A++T        +++ S I++ +     LD A   F  + 
Sbjct: 367 VLSAITGLDDLELIGSLRPIAIKTGY---EGDVVVGSAILNAYTRNGSLDLAMHFFETMP 423

Query: 95  NPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
             N ++W T+I A   C R  D    AI L++R+ EQ            A K  A + A+
Sbjct: 424 ERNEYSWTTMIAAFAQCGRLDD----AIQLYERVPEQ----------TVATKT-AMMTAY 468

Query: 152 SQ-GKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           +Q G+   A  IF   L  +V   N++I  Y   G L  A  +F  M  ++  SW  MI 
Sbjct: 469 AQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIA 528

Query: 210 AFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRH-CDH 267
            FVQ  E   AL+L   +      P   +F S  SACA +  + +G   H+  ++  C  
Sbjct: 529 GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQF 588

Query: 268 SLVTDVLVNNSLIDMYCKCGS-------------------------------LDIARQVF 296
               +  V N LI MY KCG+                               LD AR VF
Sbjct: 589 ----NSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVF 644

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           E MPKRD+ SW +II  +   G  E AL  F  ++      PN +T   +LSAC + G +
Sbjct: 645 EKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLA-RGIKPNQLTVTSLLSACGNLGAI 703

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
             G + F  +I +      L     L+ +  + G  ++   +   MP + D + W ++L 
Sbjct: 704 KLG-EQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLV 760

Query: 417 ACCK 420
            C +
Sbjct: 761 GCAQ 764



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 198/466 (42%), Gaps = 70/466 (15%)

Query: 8   GGPPTPQTHSHSIFNN--NRNEGSFNNHSSLLS--SLTECKSMSQLKQIHAQ-------- 55
           GG  + + H  + F+   N     ++   SL S  SL    S S+L   HA+        
Sbjct: 92  GGVLSQEGHPIAFFSEKLNNTRRRYSRVYSLYSHDSLKHLTSQSKLNTRHARWMDYLQQF 151

Query: 56  ---------ALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR 106
                    A     PQ H      +RI        ++ A RVF ++   +  +WN++I 
Sbjct: 152 KFVIRHKSGAKNKETPQTH-LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMIN 210

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
             +++     +A +LF   + +     +  T+   L   A      + ++    + +R +
Sbjct: 211 GYSQNGKVD-EARLLFDAFVGK-----NIRTWTILLTGYAKEGRIEEAREVFESMTERNV 264

Query: 167 VS---------------------------DVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           VS                           +V   NS++  Y  C  +  A ++FD M ER
Sbjct: 265 VSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPER 324

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAH 258
           + VSW VMI  +V   ++  A  +F +M + +  PD   F  + SA  GL  L L     
Sbjct: 325 NSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLR 384

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
              ++        DV+V +++++ Y + GSLD+A   FE+MP+R+  SW ++I  FA  G
Sbjct: 385 PIAIK---TGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCG 441

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
           R + A++ ++R V E++ +    T   +++A    G + + R  FD ++N     P +  
Sbjct: 442 RLDDAIQLYER-VPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEILN-----PNVVA 491

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
           +  ++    + G + EA  L   MP+K  A  W +++    +   S
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMIAGFVQNEES 536



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 179/420 (42%), Gaps = 77/420 (18%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGN 130
           I  +    DL  A ++F ++   N  +WN+++     C R  +A+     LF +M E+ +
Sbjct: 271 ISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARE----LFDQMPERNS 326

Query: 131 V------------------------------LPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           V                               PD+  F   L A   L            
Sbjct: 327 VSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPI 386

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
             K G   DV + +++++ Y   G LDLA   F+ M ER+  SW  MI AF Q G  D A
Sbjct: 387 AIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDA 446

Query: 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN---- 276
           ++L+ R+     P+    Q++       AT +  M A+A + R     L+ D ++N    
Sbjct: 447 IQLYERV-----PE----QTV-------ATKTAMMTAYAQVGRIQKARLIFDEILNPNVV 490

Query: 277 --NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             N++I  Y + G L  A+ +F+ MP ++  SW ++I GF  +  +  AL+    L    
Sbjct: 491 AWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSG 550

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI------NEYNITPVLEHYGCLVDLLAR 388
           S  P+  +F   LSAC + G V  GR    + I      N Y +         L+ + A+
Sbjct: 551 SV-PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNG-------LISMYAK 602

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA---SVVLSEEVAKQVIESEGGICSG 445
            GN+++  H+   + +K D V W SL+    + +    + V+ E++ K+ + S   I S 
Sbjct: 603 CGNVEDGSHVFRTIRVK-DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISA 661



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 138/322 (42%), Gaps = 64/322 (19%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           N+ I      G ++ A +VF+ M++R +VSWN MI+ + Q G+ D A  LF         
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF--------- 225

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYI--LRHCDHSLVT-DVLVNNSLIDMYCKCGSLD 290
           D +  ++I +       L  G      I   R    S+   +V+  N++I  Y + G L 
Sbjct: 226 DAFVGKNIRT----WTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLK 281

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS------------- 337
            AR++F+ MP++++ SWNS++ G+    R   A + FD++    S S             
Sbjct: 282 NARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISD 341

Query: 338 -----------------PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
                            P+   FV VLSA         G D  +++ +   I     + G
Sbjct: 342 YWEAWDVFVKMCRTVARPDQSIFVVVLSAIT-------GLDDLELIGSLRPIAIKTGYEG 394

Query: 381 ------CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA---CCKKHASVVLSEEV 431
                  +++   R G++D A+H    MP + +   W +++ A   C +   ++ L E V
Sbjct: 395 DVVVGSAILNAYTRNGSLDLAMHFFETMPER-NEYSWTTMIAAFAQCGRLDDAIQLYERV 453

Query: 432 AKQVIESEGGICSGVYVLLSRV 453
            +Q + ++  + +  Y  + R+
Sbjct: 454 PEQTVATKTAMMTA-YAQVGRI 474


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/541 (39%), Positives = 308/541 (56%), Gaps = 14/541 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A +  LD A +VF  I   +   WN LI  C+       +++ LF RM ++G+ + ++ 
Sbjct: 350 YAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG-GCHGESLSLFCRMRKEGSDI-NRT 407

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    LK+ A L A S   Q HA   K G +SD ++ N LI  Y  C  L  ANKVF+  
Sbjct: 408 TLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEH 467

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
              +++++  MI A  Q    + A+KLF  M +   EPD +   S+ +ACA L+    G 
Sbjct: 468 SSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 527

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA++++      +TDV   N+L+  Y KCGS++ A   F  +P + + SW+++I G A
Sbjct: 528 QVHAHLIKR---KFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLA 584

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG  + AL  F R+V +E  +PN IT   VL ACNH G+V E + YF  M   + I   
Sbjct: 585 QHGHGKRALDVFRRMV-DERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRT 643

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ- 434
            EHY C++DLL RAG +D+A+ LV++MP + +A +W +LL A  + H    L +  A++ 
Sbjct: 644 EEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALL-AASRVHRDPELGKLAAEKL 702

Query: 435 -VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
            V+E E    SG +VLL+  YASA  W++V  VRKLM D  V KEP  S +E+    H F
Sbjct: 703 FVLEPEK---SGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTF 759

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
             GD SHP+ + IY  L+ + + +   GY P+  +  + D     K+  L  HSERLA+A
Sbjct: 760 IVGDKSHPRARDIYAKLEELGDLMSKAGYVPNL-EVDLHDVDKSEKELLLSHHSERLAVA 818

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
             +++   G PIRV KNLR+C+DCH   K IS+I + EII+RD  RFHHF DG+CSC DY
Sbjct: 819 FALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDY 878

Query: 614 W 614
           W
Sbjct: 879 W 879



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 27/393 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI--YSRIIHFASFADLDYAFRVFY 91
           S LL+     +S+     IHA  L++ L    +  L+  YS+     S      A RVF 
Sbjct: 8   SPLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGS------ARRVFD 61

Query: 92  QIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           +  +P   +W++L+   A S +A P +A+  F+ M  +G V  ++   P  LK CA    
Sbjct: 62  ETPDPCHVSWSSLV--TAYSNNALPREALAAFRAMRARG-VRCNEFALPIVLK-CAPDAG 117

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVMID 209
              G Q HA     GL  D+++ N+L+  Y   G +D A +VFD    +R+ VSWN M+ 
Sbjct: 118 L--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMS 175

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
           AFV+      A++LF  M      P+ + F  + +AC G   L  G   HA ++R     
Sbjct: 176 AFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVR---TG 232

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
              DV   N+L+DMY K G + +A  VF  +PK D+ SWN+ I G  LHG  + AL+   
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 329 RLVVEESFSPNSITFVGVLS--ACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDL 385
           ++       PN  T   +L   A    G  + GR     MI     +   ++ G  LVD+
Sbjct: 293 QM-KSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSD--DYIGVALVDM 349

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            A+ G +D+A  +   +P K D ++W +L+  C
Sbjct: 350 YAKYGLLDDARKVFEWIPRK-DLLLWNALISGC 381



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 17/326 (5%)

Query: 17  SHSIFNNNRNEGSFNNHSSL---LSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYS 72
           S S+F   R EGS  N ++L   L S    +++S   Q+HA A +   L   H   ++  
Sbjct: 390 SLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSH---VVNG 446

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            I  +     L YA +VF +  + N   + ++I A ++  D    AI LF  M+ +G + 
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQ-CDHGEDAIKLFMEMLRKG-LE 504

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD       L ACA L A+ QGKQ HAH+ KR  ++DV+  N+L++ YA CG ++ A+  
Sbjct: 505 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLA 564

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC--AGLA 249
           F  + ++ +VSW+ MI    Q G    AL +FRRM      P+  T  S+  AC  AGL 
Sbjct: 565 FSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLV 624

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWN 308
             + G ++    +   D +        + +ID+  + G LD A ++  SMP + +   W 
Sbjct: 625 DEAKGYFSSMKEMFGIDRTEEH----YSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWG 680

Query: 309 SIILGFALHGRAEAALKYFDRLVVEE 334
           +++    +H   E      ++L V E
Sbjct: 681 ALLAASRVHRDPELGKLAAEKLFVLE 706



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 12/303 (3%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI-ENPNSFTWNTLIRACA 109
           Q+HA A+ T L       +  + +  +  F  +D A RVF +   + N+ +WN ++ A  
Sbjct: 121 QVHAVAVSTGLSGD--IFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ D    A+ LF  M+  G V P++  F   + AC        G++ HA + + G   D
Sbjct: 179 KN-DRCSDAVELFGEMVWSG-VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKD 236

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V+  N+L+  Y+  G + +A  VF  + +  +VSWN  I   V  G    AL+L  +M+ 
Sbjct: 237 VFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGM--WAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
               P+ +T  SI  ACAG    +  +    H ++++ C  S   D  +  +L+DMY K 
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADS---DDYIGVALVDMYAKY 353

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G LD AR+VFE +P++DL  WN++I G +  G    +L  F R+  E S   N  T   V
Sbjct: 354 GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGS-DINRTTLAAV 412

Query: 347 LSA 349
           L +
Sbjct: 413 LKS 415


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/584 (37%), Positives = 325/584 (55%), Gaps = 16/584 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L +     + +  +QIH   ++      +   + +  +  +A    LD A +VF  I
Sbjct: 307 SSILKACAGSGAFNLGRQIHGFMVKANADSDN--YIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +   WN LI  C+       +A+ LF RM ++G  + ++ T    LK+ A L A S 
Sbjct: 365 PQRDLVLWNALISGCSHGAQ-HAEALSLFCRMRKEGFDV-NRTTLAAVLKSTASLEAISD 422

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            +Q HA   K G +SD ++ N LI  Y  C  L+ A +VF+      ++++  MI A  Q
Sbjct: 423 TRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQ 482

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
               + A+KLF  M +   +PD +   S+ +ACA L+    G   HA++++      ++D
Sbjct: 483 CDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR---QFMSD 539

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V   N+L+  Y KCGS++ A   F  +P++ + SW+++I G A HG  + AL  F R+V 
Sbjct: 540 VFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMV- 598

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +E  SPN IT   VL ACNH G+V E + YF+ M   + I    EHY C++DLL RAG +
Sbjct: 599 DEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKL 658

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESEGGICSGVYVLL 450
           D+A+ LV++MP + +A +W +LL A  + H    L    A++  ++E E    SG +VLL
Sbjct: 659 DDAMELVNSMPFQTNAAVWGALL-AASRVHRDPELGRLAAEKLFILEPEK---SGTHVLL 714

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           +  YASA  W+DV  VRKLM D  V KEP  S +E+    H F  GD SHP+ + IY  L
Sbjct: 715 ANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKL 774

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           D + + +   GY P+  +  + D   + K+  L  HSERLA+A  +++   G PIRV KN
Sbjct: 775 DELGDLMTKAGYVPNV-EVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKN 833

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C+DCH   K IS I + EII+RD  RFHHF+DG+CSC DYW
Sbjct: 834 LRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 188/394 (47%), Gaps = 21/394 (5%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI--YSRIIHFASFADLDYA 86
           S      LL+     +S+ Q   IHA  L++ L    +  L+  YS+     S      A
Sbjct: 3   SLETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGS------A 56

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
            RVF +I +P   +W++L+   A S +A P+  +   R +   +V  ++   P  LK CA
Sbjct: 57  RRVFDEIPDPCHVSWSSLV--TAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CA 113

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWN 205
               F  G Q HA     GL  D+++ N+L+  Y   G +D A  VFD    ER+ VSWN
Sbjct: 114 PDAGF--GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWN 171

Query: 206 VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            ++ A+V+      A+K+F  M     +P+ + F  + +AC G   L  G   HA ++R 
Sbjct: 172 GLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIR- 230

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                  DV   N+L+DMY K G + +A  VF  +P+ D+ SWN+ I G  LHG  + AL
Sbjct: 231 --TGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHAL 288

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           +   ++       PN  T   +L AC   G  + GR     M+     +     +G LVD
Sbjct: 289 ELLLQM-KSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVD 346

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           + A+ G +D+A  +   +P + D V+W +L+  C
Sbjct: 347 MYAKHGLLDDAKKVFDWIPQR-DLVLWNALISGC 379



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 152/312 (48%), Gaps = 10/312 (3%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE-NPNSFTWNTLIRACA 109
           Q+HA A+ T L       +  + +  +  F  +D A  VF +     N+ +WN L+ A  
Sbjct: 121 QLHALAMATGLGGD--IFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ D    A+ +F  M+  G V P++  F   + AC        G++ HA + + G   D
Sbjct: 179 KN-DRCSHAVKVFGEMV-WGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKD 236

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V+  N+L+  Y+  G + +A  VF  + E  +VSWN  I   V  G    AL+L  +M+ 
Sbjct: 237 VFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               P+ +T  SI  ACAG    +LG   H ++++    S   D  +   L+DMY K G 
Sbjct: 297 SGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS---DNYIAFGLVDMYAKHGL 353

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           LD A++VF+ +P+RDL  WN++I G +   +   AL  F R+  +E F  N  T   VL 
Sbjct: 354 LDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM-RKEGFDVNRTTLAAVLK 412

Query: 349 ACNHRGMVSEGR 360
           +      +S+ R
Sbjct: 413 STASLEAISDTR 424


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/546 (38%), Positives = 314/546 (57%), Gaps = 27/546 (4%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A    L  A R+F ++   + F W  ++    ++     +A  +F+ M       P
Sbjct: 253 ITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN-GMLDEATRIFEEM-------P 304

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +K+   +      Y+   SQ  +    +F +    +    N+++  YA CG++D A  +F
Sbjct: 305 EKNEVSWNAMIAGYVQ--SQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSIT-----SACAGL 248
           D M +R  +SW  MI  + Q G+ + AL LF +M+     DG            S+CA +
Sbjct: 363 DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK----RDGGILNRSALACALSSCAEI 418

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           A L LG   H  +++       T  +  N+L+ MY KCGS++ A  VFE + ++D+ SWN
Sbjct: 419 AALELGKQLHGRLVKA---GFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWN 475

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           ++I G+A HG  + AL  F+ + +  +  P+ +T VGVLSAC+H G+V +G +YF+ M  
Sbjct: 476 TMIAGYARHGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ 533

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
            Y IT   +HY C++DLL RAG +DEAL+L+ +MP  PDA  W +LL A  + H    L 
Sbjct: 534 NYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGAS-RIHGDTELG 592

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           E+ A++V E E    SG+YVLLS +YA++ RW +V  +R  M DKGV K PG S +EI  
Sbjct: 593 EKAAEKVFEMEPD-NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             H F  GD SHP+ ++IY +L+ +D +LK  G+    ++  + D  ++ K+  L+ HSE
Sbjct: 652 KTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSS-TKLVLHDVEEEEKEHMLKYHSE 710

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LA+A GIL++ PG PIRV KNLRVC+DCH   K IS+I   +IIVRD  RFHHF +GSC
Sbjct: 711 KLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSC 770

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 771 SCGDYW 776



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 171/375 (45%), Gaps = 37/375 (9%)

Query: 64  QHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
           + ++ + Y+ +I  + S    D A +VF ++ + +  +WN ++    ++ +    A  LF
Sbjct: 87  RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSA-ARALF 145

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK--QAHAHIFKRGLVSDVYINNSLIHFY 180
                  N +P+K    +     A L  F+Q    +    IF + LV +    N L+  Y
Sbjct: 146 -------NQMPEKDVVSWN----AMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAY 194

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240
              G ++ A ++FD+ ++  +VSWN ++  +V+    D A  LF RM +    D  ++  
Sbjct: 195 VQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV---RDKISWNI 251

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + +  A    LS          R  +   + DV    +++  + + G LD A ++FE MP
Sbjct: 252 MITGYAQNGLLSEAR-------RLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +++  SWN++I G+    + E A + FD++    + S N  T V   + C   G + + +
Sbjct: 305 EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWN--TMVTGYAQC---GNIDQAK 359

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             FD M     I+     +  ++   A++G  +EALHL   + MK D  I      AC  
Sbjct: 360 ILFDEMPQRDCIS-----WAAMISGYAQSGQSEEALHLF--IKMKRDGGILNRSALACAL 412

Query: 421 KHASVVLSEEVAKQV 435
              + + + E+ KQ+
Sbjct: 413 SSCAEIAALELGKQL 427



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 52/248 (20%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           SD+   N  I  Y   G  + A  VF+ M  RS V++N MI  ++   +FD A K+F +M
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
                PD                                     D++  N ++  Y K G
Sbjct: 118 -----PD------------------------------------RDLISWNVMLSGYVKNG 136

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           +L  AR +F  MP++D+ SWN+++ GFA +G  E A K FD+++V+     N I++ G+L
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK-----NEISWNGLL 191

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SA    G + + R  FD  ++   ++     + CL+    R   +D+A  L   MP++ D
Sbjct: 192 SAYVQNGRIEDARRLFDSKMDWEIVS-----WNCLMGGYVRKKRLDDARSLFDRMPVR-D 245

Query: 408 AVIWRSLL 415
            + W  ++
Sbjct: 246 KISWNIMI 253



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 162/372 (43%), Gaps = 63/372 (16%)

Query: 86  AFRVFYQIENPNSFTWNTLIRA--------CARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A  VF  +   ++ T+N +I          CAR V         F++M       PD+  
Sbjct: 79  ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKV---------FEKM-------PDRDL 122

Query: 138 FPFALKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
             + +    Y+     G  + A  +F +    DV   N+++  +A  G ++ A K+FD M
Sbjct: 123 ISWNVMLSGYV---KNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
           L ++ +SWN ++ A+VQ G  + A +LF             ++ ++  C       +G +
Sbjct: 180 LVKNEISWNGLLSAYVQNGRIEDARRLF--------DSKMDWEIVSWNCL------MGGY 225

Query: 257 AHAYILRHC----DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
                L       D   V D +  N +I  Y + G L  AR++FE +P RD+ +W +++ 
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           GF  +G  + A + F     EE    N +++  +++       + + R+ FD M +    
Sbjct: 286 GFVQNGMLDEATRIF-----EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS 340

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           +     +  +V   A+ GNID+A  L   MP + D + W +++      +A    SEE  
Sbjct: 341 S-----WNTMVTGYAQCGNIDQAKILFDEMPQR-DCISWAAMISG----YAQSGQSEEAL 390

Query: 433 KQVI--ESEGGI 442
              I  + +GGI
Sbjct: 391 HLFIKMKRDGGI 402


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 325/623 (52%), Gaps = 48/623 (7%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF 87
           G  +  ++L++   +C+++   +   A+ +   +P +   L   + ++ +    D+  A 
Sbjct: 192 GVLSVSNALVALYMKCEALEATRD--ARKVLDEMPDK-DALTWTTMVVGYVRRGDVGAAR 248

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF +++      WN +I     S     +A  LF+RM+ +  V  D+ TF   L ACA 
Sbjct: 249 SVFEEVDVKFDVVWNAMISGYVHS-GMVVEAFELFRRMVLE-RVPLDEFTFTSVLSACAN 306

Query: 148 LFAFSQGKQAHAHI--FKRGLVSD--VYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
              F+ GK  H  I   +   V +  + +NN+L+  Y+ CG++ +A ++FDNM  + +VS
Sbjct: 307 AGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVS 366

Query: 204 WN-------------------------------VMIDAFVQFGEFDSALKLFRRMQIL-F 231
           WN                               VM+  +V  G  + ALKLF RM+    
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDV 426

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           +P  YT+    SAC  L +L  G   H ++++             N+LI MY +CG++  
Sbjct: 427 KPCDYTYAGAISACGELGSLKHGKQLHGHLVQL---GFEGSNSAGNALITMYARCGAVKE 483

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           A  +F  MP  D  SWN++I     HG    AL+ FDR+V E  + P+ I+F+ VL+ACN
Sbjct: 484 ANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY-PDRISFLTVLTACN 542

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           H G+V EG  YF+ M  ++ I P  +HY  L+DLL RAG I EA  L+  MP +P   IW
Sbjct: 543 HSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIW 602

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471
            ++L  C +    + L    A Q+ +       G Y+LLS  Y++A RW D   VRKLM 
Sbjct: 603 EAILSGC-RTSGDMELGAHAADQLFKMTPQ-HDGTYILLSNTYSAAGRWVDAARVRKLMR 660

Query: 472 DKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
           D+GV KEPGCS IE     H F  GDT HP+  ++Y FL+++  +++  GY PD ++  +
Sbjct: 661 DRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPD-TKVVL 719

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
            D     K+  L  HSERLA+  G+L L PG  + V KNLR+C DCH V   +S+    E
Sbjct: 720 HDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGRE 779

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           I+VRD  RFHHFKDG CSC +YW
Sbjct: 780 IVVRDVRRFHHFKDGECSCGNYW 802



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 128/308 (41%), Gaps = 62/308 (20%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
            SL+  YA+ G L  A   FD + +  R  V  N +I A+ +      A+ +FR +    
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 231 -FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH-------SLVTDVL-VNNSLID 281
              PD Y+F ++ SA   L  +S+         RHC         S    VL V+N+L+ 
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISV---------RHCAQLQCSVLKSGAGGVLSVSNALVA 202

Query: 282 MYCKCGSLDI---ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD---------- 328
           +Y KC +L+    AR+V + MP +D  +W ++++G+   G   AA   F+          
Sbjct: 203 LYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVW 262

Query: 329 --------------------RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
                               R +V E    +  TF  VLSAC + G  + G+     +  
Sbjct: 263 NAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITR 322

Query: 369 -EYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL----DACCKK 421
            + N  P   L     LV L ++ GNI  A  +  NM  K D V W ++L    ++ C  
Sbjct: 323 LQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSK-DVVSWNTILSGYVESSCLD 381

Query: 422 HASVVLSE 429
            A  V  E
Sbjct: 382 KAVEVFEE 389


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 334/589 (56%), Gaps = 25/589 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLLS+ TE    ++   IH+ +++  L  +   L + +++I  +A F  L    +VF ++
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESE---LFVSNKLIDLYAEFGSLKDCQKVFDRM 308

Query: 94  ENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
              +  +WN++I+A    ++ +P +AI+LFQ M     + PD  T        + L    
Sbjct: 309 YVRDLISWNSIIKA--YELNEQPLRAILLFQEM-RLSRIQPDCLTLISLASILSQLGEIR 365

Query: 153 QGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             +       ++G  + D+ I N+++  YA  G +D A  VF+ +  + ++SWN +I  +
Sbjct: 366 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGY 425

Query: 212 VQFGEFDSALKLFRRMQILFEPDGY------TFQSITSACAGLATLSLGMWAHAYILRHC 265
            Q G    A++++  M+   E  G       T+ S+  AC+    L  GM  H  +L++ 
Sbjct: 426 AQNGFASEAIEMYNIME---EEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN- 481

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              L  DV V  SL DMY KCG LD A  +F  +P+ +   WN++I     HG  E A+ 
Sbjct: 482 --GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVM 539

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  ++ +E   P+ ITFV +LSAC+H G+V EG   F++M  +Y ITP L+HYGC+VDL
Sbjct: 540 LFKEML-DEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDL 598

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
             RAG ++ AL+ + +MP++PDA IW +LL A C+ H +V L +  ++ + E E     G
Sbjct: 599 YGRAGQLEIALNFIKSMPLQPDASIWGALLSA-CRVHGNVDLGKIASEHLFEVEPEHV-G 656

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            +VLLS +YASA +W  V  +R + + KG+ K PG SS+E+D     F+ G+ +HP  ++
Sbjct: 657 YHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEE 716

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           +Y  L  + EKLK  GY PD+ +  + D  DD K+  L  HSERLA+A  ++       I
Sbjct: 717 MYRELTALHEKLKMVGYVPDH-RFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTI 775

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+FKNLRVC DCH VTK IS+I   EIIVRD  RFHHFK+G CSC DYW
Sbjct: 776 RIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 208/427 (48%), Gaps = 45/427 (10%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           ++ +  S L  C++++   +IH  AL+         + + + +IH +  +  +  A  +F
Sbjct: 152 DYRTFPSVLKACRNVTDGNKIHCLALKFGFMWD---VYVAASLIHLYCRYGAVVNARILF 208

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   +  +WN +I    +S +AK +A+ L       G    D  T    L AC     
Sbjct: 209 DEMPTRDMGSWNAMISGYCQSGNAK-EALTL-----SDGLRAMDSVTVVSLLSACTEAGD 262

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
           F++G   H++  K GL S+++++N LI  YA  G L    KVFD M  R L+SWN +I A
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKA 322

Query: 211 FVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +    +   A+ LF+ M++   +PD  T  S+ S  + L  +        + LR      
Sbjct: 323 YELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLR--KGWF 380

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           + D+ + N+++ MY K G +D AR VF  +P +D+ SWN+II G+A +G A  A++ ++ 
Sbjct: 381 LEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYN- 439

Query: 330 LVVEE---SFSPNSITFVGVLSACNHRGMVSEGRD----------YFDVMINEYNITPVL 376
            ++EE     S N  T+V VL AC+  G + +G            Y DV +         
Sbjct: 440 -IMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGT------- 491

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA----SVVLSEEVA 432
                L D+  + G +D+AL L   +P + ++V W +L+ AC   H     +V+L +E+ 
Sbjct: 492 ----SLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLI-ACHGFHGHGEKAVMLFKEML 545

Query: 433 KQVIESE 439
            + ++ +
Sbjct: 546 DEGVKPD 552



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 29/319 (9%)

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           + A  R   A   A+    +   +   + D HT     + C  L      K  HA +   
Sbjct: 27  VGAVVREFSASANALQDCWKNGNESKEIDDVHTL---FRYCTNL---QSAKCLHARLVVS 80

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
             + +V I+  L++ Y   G++ LA   FD++  R + +WN+MI  + + G     ++ F
Sbjct: 81  NAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCF 140

Query: 225 RRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
               +    +PD  TF S+  AC  +     G   H   L+      + DV V  SLI +
Sbjct: 141 SLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALK---FGFMWDVYVAASLIHL 194

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           YC+ G++  AR +F+ MP RD+ SWN++I G+   G A+ AL   D L      + +S+T
Sbjct: 195 YCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR-----AMDSVT 249

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAGNIDEALHL 398
            V +LSAC   G  + G     V I+ Y+I   LE        L+DL A  G++ +   +
Sbjct: 250 VVSLLSACTEAGDFNRG-----VTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKV 304

Query: 399 VSNMPMKPDAVIWRSLLDA 417
              M ++ D + W S++ A
Sbjct: 305 FDRMYVR-DLISWNSIIKA 322



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 17/157 (10%)

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           + +V ++  L+++YC  G++ +AR  F+ +  RD+ +WN +I G+   G +   ++ F  
Sbjct: 83  IQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSL 142

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDY------FDVMINEYNITPVLEHYGCLV 383
            ++     P+  TF  VL AC +   V++G         F  M + Y           L+
Sbjct: 143 FMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAAS-------LI 192

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            L  R G +  A  L   MP + D   W +++   C+
Sbjct: 193 HLYCRYGAVVNARILFDEMPTR-DMGSWNAMISGYCQ 228


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/635 (35%), Positives = 337/635 (53%), Gaps = 49/635 (7%)

Query: 22  NNNRNEGSFN--NH------SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR 73
            NN N  +F+  +H      SSL+S L +C +++Q+KQIH   LR  L Q    L    R
Sbjct: 31  TNNNNSSTFSEISHQRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIR 90

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQGNVL 132
            +         Y  RV   ++  N F W  +IR    +++ K  +AI ++  M ++  + 
Sbjct: 91  TLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRG--YTIEGKFDEAIAMYGCMRKE-EIT 147

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P   TF   LKAC  +   + G+Q HA  F+      VY+ N++I  Y  CG +  A KV
Sbjct: 148 PVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKV 207

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLF---------------------------- 224
           FD M ER ++SW  +I A+ + G  +SA  LF                            
Sbjct: 208 FDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEAL 267

Query: 225 ----RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
               R  +     D  T     SACA L        A   I +   +S    V++ ++LI
Sbjct: 268 EYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA-VQIAQKSGYSPSDHVVIGSALI 326

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG+++ A  VF SM  +++ S++S+ILG A HGRA+ AL  F  +V + +  PN+
Sbjct: 327 DMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNT 386

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +TFVG L+AC+H G+V +GR  F  M   + + P  +HY C+VDLL RAG + EAL L+ 
Sbjct: 387 VTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIK 446

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
            M ++P   +W +LL A C+ H +  ++E  A+ + E E  I  G Y+LLS VY+SA  W
Sbjct: 447 TMSVEPHGGVWGALLGA-CRIHNNPDIAEIAAEHLFELEPDII-GNYILLSNVYSSAGDW 504

Query: 461 NDVGLVRKLMTDKGVTKEPGCS-SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
             V  VRKL+ +KG+ K P  S  ++ +G  H+FF G+ +HP +K+I   L+ + E+L +
Sbjct: 505 GGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTA 564

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GY PD S     D  D+ K+  L  H+E+LA+A  +L       I++ KNLR+C+DCH 
Sbjct: 565 LGYQPDLSSVPY-DVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHM 623

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             +L S +    II+RD  RFHHF+ G+CSC D+W
Sbjct: 624 FMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/451 (43%), Positives = 283/451 (62%), Gaps = 8/451 (1%)

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   DV    +++      G +D A +VFD M  R+LVSWN MI  +V+   F  AL++F
Sbjct: 159 GGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVF 218

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M+ L  E +G+   S   AC G   L  G   + ++ +     +  D  +  +++DMY
Sbjct: 219 DEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQS---GIEVDAKLATAVVDMY 275

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
           CKCG +D A +VF+S+P R LT+WN +I GFA+HGR + AL+ F ++      +P+ +T 
Sbjct: 276 CKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAA-GVAPDDVTL 334

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           + VL+AC H G VSEGR Y + +++ + I P  EHYGC+VDL  RAG +DEA  ++  MP
Sbjct: 335 LNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMP 394

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           M PD  +  +LL AC K H  V L E +  +VI+ +    SG YVLL+ + A A RW++V
Sbjct: 395 MDPDLAVLGALLGAC-KIHGDVDLGEAIGWRVIDLDPD-NSGRYVLLANLLAGAGRWDEV 452

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
           G VR+LM ++ V+KE G S IE+DG A EF  G+  HPQ ++IY     +  ++++ GY 
Sbjct: 453 GKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYV 512

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD  +A + D  ++ K+++L  HSE+LAIA G+L  +P   +R+ KNLRVC+DCHE TK 
Sbjct: 513 PDTGEA-LHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKY 571

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +SR+F  EI+VRDR+RFHHFKDG CSC DYW
Sbjct: 572 VSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/629 (35%), Positives = 361/629 (57%), Gaps = 45/629 (7%)

Query: 22  NNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQ----------------ALRTALPQQ- 64
              R+ G  NN++ L+ SL +  +++Q  Q+ +Q                  + +LPQ  
Sbjct: 39  TTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGI 98

Query: 65  --HKTLL---------IYSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTLIRACARSV 112
             H+ L+         + +++I+  S  D +D A +VF +      + WN L RA   + 
Sbjct: 99  DLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAG 158

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC----AYLFAFSQGKQAHAHIFKRGLVS 168
             + + + L++RM   G V  D+ T+ + LKAC    A++     G++ H HI + G   
Sbjct: 159 YGR-EVLDLYRRMNRIG-VPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEG 216

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
            V+I  +L+  YA  G +  A++VFD M  +++VSW+ MI  + + G+   AL+LFR+M 
Sbjct: 217 HVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMM 276

Query: 229 ILFE---PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           +  +   P+  T  S+  ACA LA L  G   H YILR    S++    V ++L+ +Y +
Sbjct: 277 LENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILP---VVSALVTVYAR 333

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG+L++  +VFE M KRD+ SWNS+I  + +HG    A++ F  ++ ++  SP+ I+FV 
Sbjct: 334 CGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMI-DQGLSPSPISFVS 392

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL AC+H G+V EG+  F+ M+  + I P +EHY C+VDLL RA  +DEA  ++ +M ++
Sbjct: 393 VLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIE 452

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           P   +W SLL +C + H +V L+E    ++ E E    +G YVLL+ +YA A+ WN+V  
Sbjct: 453 PGPKVWGSLLGSC-RIHCNVELAERATSRLFELEP-TNAGNYVLLADIYAEAKMWNEVKR 510

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           V+ L+  +G+ K PG S IEI    + F + D  +PQ +Q++  L  +  ++K +GY PD
Sbjct: 511 VKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPD 570

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            ++  + D   + K+  +  HSE+LA+A G++N K G  IR+ KNLR+C+DCH VTK IS
Sbjct: 571 -TKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFIS 629

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +  N EI+VRD  RFH F+DG CSC DYW
Sbjct: 630 KFANREILVRDVNRFHLFQDGVCSCGDYW 658


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 339/588 (57%), Gaps = 24/588 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALP--QQHKTLLI--YSRIIHFASFADLDYAFRV 89
           ++++SS ++   + +  Q H  AL++ L   Q  K  LI  YSR       +D+  A  V
Sbjct: 133 ATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSR------RSDVKGAMSV 186

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           +Y++   + F++N +I     +     +A+ +  RM+++  ++ D  T+  A   C++L 
Sbjct: 187 WYEVPGLDVFSYNIIINGLLEN-GYPSEALEVLDRMVDEC-IVWDNVTYVTAFGLCSHLK 244

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G Q H  +F+ G   D ++++++I  Y  CG++  A KVF+ +  +++VSW  ++ 
Sbjct: 245 DLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILA 304

Query: 210 AFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC--D 266
           A+ Q G F+ AL  F  M++    P+ YTF  + ++CAG++ L  G   H  I +    D
Sbjct: 305 AYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFED 364

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           H     ++V N+LI+MY K GS++ A +VF  M  RD  +W+++I G + HG    AL  
Sbjct: 365 H-----IIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVV 419

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  ++  +   P+ +TFVGVLSAC H G V EG  Y + ++ +  I P +EHY C+V LL
Sbjct: 420 FQEMLAAKE-CPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLL 478

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            +AG +DEA + + + P+K D V WR+LL AC   H +  L ++VA+ V++ + G   G 
Sbjct: 479 CKAGRLDEAENFMKSTPVKWDVVAWRTLLSAC-HVHQNYGLGKKVAELVLQMDPGDV-GT 536

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           Y+LLS +YA A+RW+ V  +RKLM ++ V KEPG S IEI    H F +   +HP++ QI
Sbjct: 537 YILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQI 596

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  +  +   ++  GY PD + A   D  D+ K+  +  HSE+LAIA G++    G PIR
Sbjct: 597 YEKVQELLTMIRPMGYVPDIA-AVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIR 655

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLR+C DCH   KLIS++ N  IIVRD  RFH F DG CSC DYW
Sbjct: 656 VIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 181/383 (47%), Gaps = 12/383 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL    + K++   K IHA  + T    +   + + S I  +A    +  A  +F  +  
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N  +W  L+     +     + + LF+ MI    + P+++ F   + +C+      +G 
Sbjct: 91  RNVVSWGALMAGYFHN-GLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGW 149

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H +  K GLV   Y+ N+LI  Y+    +  A  V+  +    + S+N++I+  ++ G
Sbjct: 150 QCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENG 209

Query: 216 EFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
               AL++  RM    I++  D  T+ +    C+ L  L LG+  H  + R        D
Sbjct: 210 YPSEALEVLDRMVDECIVW--DNVTYVTAFGLCSHLKDLRLGLQVHCRMFR---TGAEYD 264

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V++++IDMY KCG++  AR+VF  +  +++ SW +I+  ++ +G  E AL +F  + V
Sbjct: 265 SFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEV 324

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   PN  TF  +L++C     +  G+      I +      +     L+++ +++G+I
Sbjct: 325 -DGLLPNEYTFAVLLNSCAGISALGHGK-LLHTRIKKSGFEDHIIVGNALINMYSKSGSI 382

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
            EA H V    +  D++ W +++
Sbjct: 383 -EAAHKVFLEMICRDSITWSAMI 404



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P  +T Q +    A    L  G   HA+++   + +   +++  NSLI++Y KC  + +A
Sbjct: 24  PLEHTIQ-LLKVSADTKNLKFGKMIHAHLII-TNQATKDNIVQVNSLINLYAKCDQIMVA 81

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
           R +F+ M KR++ SW +++ G+  +G     L+ F  ++  +   PN   F  ++S+C+ 
Sbjct: 82  RILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSD 141

Query: 353 RGMVSEG 359
            G V EG
Sbjct: 142 SGQVVEG 148


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 344/592 (58%), Gaps = 16/592 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFAD-LD 84
           E  F  + ++L+     +++ + +++H   ++T  LP    ++ + +R+I   +  D L 
Sbjct: 87  EVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLP----SVYLRTRLIVLYNKCDCLG 142

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A  +F ++   N  +W  +I A ++   A  +A+ LF  M+ + +  P+  TF   L +
Sbjct: 143 DAREMFDEMPQKNVVSWTAMISAYSQRGFAF-EALNLFVEML-RSDTEPNHFTFATILTS 200

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C     F  G+Q H+   KR   S +++ +SL+  YA  G +  A+ VF  + ER +V+ 
Sbjct: 201 CYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVAC 260

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
             +I  + Q G  + ALKLFR++QI     +  T+ S+ +A +GLA L+ G   H+++LR
Sbjct: 261 TAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLR 320

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
              +S V   ++ NSLIDMY KCG++  AR++F+SMP+R   SWN++++G++ HG A   
Sbjct: 321 SGQYSYV---VLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREV 377

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCL 382
           L+ F  +  E    P+SIT++ VLS C+H  +   G + F  M+N  + I P + HYGC+
Sbjct: 378 LELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCV 437

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL RAG ++EA   +  MP  P A IW SLL + C+ H+ V +   V ++++E E   
Sbjct: 438 VDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGS-CRVHSDVEIGIIVGQKLLELEPE- 495

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G YV+LS +YASA +W D+  +R LM +K VTKEPG S +E+D I H F A D +HP+
Sbjct: 496 NAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPR 555

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            +++   +  +  K K  GY PD S   + D  ++ K+  L  HSE+LA+A G++    G
Sbjct: 556 REEVAKKVKELSIKFKEDGYVPDLS-CVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEG 614

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             IRV KNLR+C DCH   K +SR++   +I+RD+ RFH+   G CSC DYW
Sbjct: 615 TTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 321/573 (56%), Gaps = 25/573 (4%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI-RAC 108
           K +H Q L+T      +  +   ++  +    D+  AF+VF ++   +   W+ +I R C
Sbjct: 267 KSVHGQILKTCYELDPRVGVGLLQL--YTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFC 324

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
                 K  A+ +F RM E G V+P++ T    L  CA       G+Q H  + K G   
Sbjct: 325 QNGFCNK--AVDIFIRMRE-GFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDL 381

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR--- 225
           DVY++N+LI  YA C  +D A K+F  +  +++VSWN +I  +   GE   AL +FR   
Sbjct: 382 DVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREAL 441

Query: 226 RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           R Q+       TF S   ACA LA++ LG+  H   ++  +   V    V+NSLIDMY K
Sbjct: 442 RNQVSVTE--VTFSSALGACASLASMELGVQVHGLAIKTNNAKRVA---VSNSLIDMYAK 496

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG + +A+ VF  M   D+ SWN++I G++ HG    AL+ FD ++      PN +TF+G
Sbjct: 497 CGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFD-IMKGSDCKPNGLTFLG 555

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VLS C++ G++ +G+D F+ MI ++ I P LEHY C+V L  R+G +D+A++L+  +P +
Sbjct: 556 VLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYE 615

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SGVYVLLSRVYASARRWND 462
           P  +IWR++L A   ++     +EE A++  E    I       YVLLS +YA A++W +
Sbjct: 616 PSVMIWRAMLSASMNQY-----NEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWAN 670

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           V  +RK M +KGV KEPG S IE  G  H F  G + HP  K I G L+ ++ K    GY
Sbjct: 671 VASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGY 730

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP-IRVFKNLRVCKDCHEVT 581
            PD   A ++D  D+ K   L +HSERLA+A G++ +      I + KNLR+C DCH   
Sbjct: 731 VPD-RNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAM 789

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+IS I   ++++RD  RFHHF  G CSC D+W
Sbjct: 790 KVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 9/342 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    +D A  VF  I   +   W  ++ +C         ++ L  RM   G  +P+ +
Sbjct: 191 YSVCGSVDSARSVFEGILCKDIVVWAGIV-SCYVENGCFEDSLQLLSRMGMDG-FMPNNY 248

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF  ALKA   L AF   K  H  I K     D  +   L+  Y   G +  A KVF+ M
Sbjct: 249 TFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGM 255
            +  +V W+ MI  F Q G  + A+ +F RM+  F  P+ +T  SI + CA      LG 
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGE 368

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H  +++        DV V+N+LID+Y KC  +D A ++F  +  +++ SWN++I+G+ 
Sbjct: 369 QLHGLVVK---VGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYE 425

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             G    AL  F R  +    S   +TF   L AC     +  G     + I   N   V
Sbjct: 426 NLGEGGKALNMF-REALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRV 484

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                 L+D+ A+ G+I  A  + + M    D   W +L+  
Sbjct: 485 AVS-NSLIDMYAKCGDIKVAQTVFNEME-TIDVASWNALISG 524



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 171/373 (45%), Gaps = 26/373 (6%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDY---AFRVFYQIENPNSFTWNTLIR-- 106
           + A+A+   + ++   L +++  I   ++    +   A  +F ++   N+ ++ TL +  
Sbjct: 66  VSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGY 125

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           AC   V        L+ R+  +G+ L + H F   LK    L         H+ I K G 
Sbjct: 126 ACQDPVG-------LYSRLHREGHEL-NPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGY 177

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            S+ ++  +LI+ Y+ CG +D A  VF+ +L + +V W  ++  +V+ G F+ +L+L  R
Sbjct: 178 DSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSR 237

Query: 227 MQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M +  F P+ YTF +   A  GL         H  IL+ C      D  V   L+ +Y +
Sbjct: 238 MGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYE---LDPRVGVGLLQLYTQ 294

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFV 344
            G +  A +VF  MPK D+  W+ +I  F  +G    A+  F R+   E F  PN  T  
Sbjct: 295 LGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRM--REGFVVPNEFTLS 352

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLARAGNIDEALHLVSNM 402
            +L+ C        G     +++    +   L+ Y    L+D+ A+   +D A+ L + +
Sbjct: 353 SILNGCAIGKCSGLGEQLHGLVV---KVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAEL 409

Query: 403 PMKPDAVIWRSLL 415
             K + V W +++
Sbjct: 410 SSK-NVVSWNTVI 421



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 140/337 (41%), Gaps = 19/337 (5%)

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP--DKHTFPFALKA 144
            R+ +  E+         IR C  SV     ++          +V+P  D H +   L+ 
Sbjct: 5   LRIIHVAESRRLMIQCNRIRQCGFSVQTAESSVQW------SDSVVPCLDSHAYGTMLRR 58

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C         K  H  I K+G   D++  N L++ Y   G    A  +FD M ER+ VS+
Sbjct: 59  CIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSY 118

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
             +   +          +L R      E + + F S       L    +  W H+ I++ 
Sbjct: 119 VTLTQGYACQDPVGLYSRLHREGH---ELNPHVFTSFLKLFVSLDKAEICWWLHSPIVK- 174

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                 ++  V  +LI+ Y  CGS+D AR VFE +  +D+  W  I+  +  +G  E +L
Sbjct: 175 --LGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSL 232

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLV 383
           +   R+ + + F PN+ TF   L A    G     +  +  ++   Y + P +     L+
Sbjct: 233 QLLSRMGM-DGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG--LL 289

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            L  + G++ +A  + + MP K D V W  ++   C+
Sbjct: 290 QLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIARFCQ 325


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 341/601 (56%), Gaps = 17/601 (2%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY---SRIIH 76
           IF   ++EG   +  + LS L  C +   L+  H + +R ++ +    L ++   + I  
Sbjct: 98  IFQRMQHEGERCDRVTFLSILDACVNPENLQ--HGKHVRESISETSFELDLFVGTALITM 155

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A     + A +VF +++  N  TW+ +I A A       +A+  F RM++Q  +LP++ 
Sbjct: 156 YARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHC-GEALRYF-RMMQQEGILPNRV 213

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC--GHLDLANKVFD 194
           TF   L          +  + H  I + GL     ++N+L++ Y  C  G LD+A  +  
Sbjct: 214 TFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQ 273

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSL 253
            M E+ + +WNV+I+ +   G    AL+ ++R+Q+   P D  TF S+ +AC    +L+ 
Sbjct: 274 EMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAE 333

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   H+  +   +  L +DV+V N+L +MY KCGS++ AR++F+SMP R   SWN ++  
Sbjct: 334 GKMIHSNAV---ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQA 390

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A HG +E  LK   R + +E    N ITFV VLS+C+H G+++EG  YF  + ++  I 
Sbjct: 391 YAQHGESEEVLKLI-RKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIE 449

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
              EHYGCLVDLL RAG + EA   +S MP +P+ V W SLL AC + H  +   +  A+
Sbjct: 450 VKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGAC-RVHKDLDRGKLAAR 508

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           +++E + G  S   V+LS +Y+    W +   +R+ M  + V K PG SSI++    HEF
Sbjct: 509 KLLELDPG-NSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEF 567

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
              DTSHP+  +IY  ++ +   ++  GY PD ++  + D  ++ K+S L  HSE+LAIA
Sbjct: 568 RVRDTSHPRAAEIYDKVEELCFAMREAGYVPD-TKMVLHDVDEEQKESLLAYHSEKLAIA 626

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            G+++      + +FKNLRVC+DCH  TK IS+I   EI+VRD  RFHHF+DGSCSC DY
Sbjct: 627 FGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDY 686

Query: 614 W 614
           W
Sbjct: 687 W 687



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L +     A  +GK  H+ + +     DV++N +L++ Y  CG L  A KVFD M
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGM 255
             RS+ +WN MI A+        A  +F+RMQ   E  D  TF SI  AC     L  G 
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGK 131

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
                I    + S   D+ V  +LI MY +C S + A QVF  M +++L +W++II  FA
Sbjct: 132 HVRESI---SETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFA 188

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG    AL+YF R++ +E   PN +TF+ +L+       + E      ++I E+ +   
Sbjct: 189 DHGHCGEALRYF-RMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLITEHGLDDT 246

Query: 376 LEHYGCLVDLLAR--AGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                 LV++  R   G +D A  ++  M  +     W  L++ 
Sbjct: 247 TTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLING 289


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 334/587 (56%), Gaps = 23/587 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFYQ 92
           S++L+  T    +   +Q+H    R         + + + ++ F S  D LD   ++F++
Sbjct: 245 STVLTVATGVGDLCLGRQVHGLVARAT----SSNVFVNNSLLDFYSKCDCLDEMKKLFHE 300

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFA--LKACAYLF 149
           +   ++ ++N +I   A +   +  +IVL  R+  +   L  D+   P+A  L     + 
Sbjct: 301 MIERDNVSYNVMIAGYAWN---RCASIVL--RLFREMQSLSFDRQALPYASLLSVAGSVP 355

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               GKQ HA +   GL S+  + N+LI  Y+ CG LD A   F N  +++ VSW  MI 
Sbjct: 356 HIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMIT 415

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
             VQ G+ + AL+LF  M+     PD  TF S   A + LA + LG   H+Y++R     
Sbjct: 416 GCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRS---G 472

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            ++ V   ++L+DMY KCG LD A Q F+ MP+R+  SWN++I  +A +G+A+ A+K F+
Sbjct: 473 HMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFE 532

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            ++    F P+S+TF+ VLSAC+H G+  E   YF++M  EY I+P  EHY C++D L R
Sbjct: 533 GMLCY-GFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGR 591

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            G  D+   ++  MP + D +IW S+L +C + H +  L+  VA + + S G   +  YV
Sbjct: 592 VGRFDKVQEMLGEMPFEDDPIIWSSILHSC-RTHGNQDLAR-VAAEKLFSMGSTDATPYV 649

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           +LS ++A A +W D   V+K+M D+G+ KE G S +E+    + F + D ++P   +I  
Sbjct: 650 ILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKD 709

Query: 509 FLDLIDEKLKSRGYTPDYS-QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
            L+ + +++  +GY PD S     VD  DD K  SL+ HSERLAIA  ++N  PG PIRV
Sbjct: 710 ELERLYKEMDKQGYKPDTSCTLQQVD--DDIKLESLKYHSERLAIAFALINTPPGTPIRV 767

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNL  C DCH   K++S+I N +IIVRD +RFHHFKDG CSC DYW
Sbjct: 768 MKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 181/401 (45%), Gaps = 37/401 (9%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL SL     ++Q     A+AL   +P ++    +   +  ++    L  A  +F  + +
Sbjct: 40  LLHSLISSGRLAQ-----ARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLF--LSS 92

Query: 96  P----NSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           P    ++ TW  +I A A +  A+   A+ LF+ M+ +G V PD+ T    L     L  
Sbjct: 93  PPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREG-VAPDRVTVATVLN----LPP 147

Query: 151 FSQGKQA-------HAHIFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            S G  A       H    K GL+ S+V + N+L+  Y   G L  A +VF  M  R  V
Sbjct: 148 ASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSV 207

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           ++N M+    + G    AL LF  M+        +TF ++ +   G+  L LG   H  +
Sbjct: 208 TYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLV 267

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            R    +  ++V VNNSL+D Y KC  LD  +++F  M +RD  S+N +I G+A +  A 
Sbjct: 268 AR----ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCAS 323

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             L+ F R +   SF   ++ +  +LS       +  G+     ++    ++        
Sbjct: 324 IVLRLF-REMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLV-LLGLSSEDLVGNA 381

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPD--AVIWRSLLDACCK 420
           L+D+ ++ G +D A    +N   K D   V W +++  C +
Sbjct: 382 LIDMYSKCGMLDAA---KTNFINKNDKTGVSWTAMITGCVQ 419


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 341/617 (55%), Gaps = 17/617 (2%)

Query: 3    VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRT 59
            V +V  G      +S  IF   + E    N  +  S L  C  +  L+   QIH+Q ++T
Sbjct: 443  VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 502

Query: 60   ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
            +   Q    +    I  +A    LD A+ +  +    +  +W T+I A     +   +A+
Sbjct: 503  SF--QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI-AGYTQYNFDDKAL 559

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
              F++M+++G +  D+     A+ ACA L A  +G+Q HA     G  SD+   N+L+  
Sbjct: 560  TTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 618

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            Y+ CG+++ A   F+       ++WN ++  F Q G  + AL++F RM +   + + +TF
Sbjct: 619  YSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTF 678

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             S   A +  A +  G   HA I +    S   +  V N++I MY KCGS+  A++ F  
Sbjct: 679  GSAVKAASETANMKQGKQVHAVITKTGYDS---ETEVCNAIISMYAKCGSISDAKKQFLE 735

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            +  ++  SWN++I  ++ HG    AL  FD+++   +  PN +T VGVLSAC+H G+V +
Sbjct: 736  LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMI-HSNVRPNHVTLVGVLSACSHIGLVDK 794

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G +YF+ M  EY + P  EHY C+VD+L RAG +  A   +  MP++PDA++WR+LL AC
Sbjct: 795  GIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSAC 854

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
               H ++ + E  A  ++E E    S  YVLLS +YA  R+W+   L R+ M +KGV KE
Sbjct: 855  VV-HKNMEIGEFAAHHLLELEPED-SATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKE 912

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-D 537
            PG S IE+    H F+ GD +HP   +I+ +   + ++    GY  D    +++ EL  +
Sbjct: 913  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDC--FSLLSELQQE 970

Query: 538  GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
             K  ++ +HSE+LAI+ G+L+L   MPI V KNLRVC DCH+  K +S++ N EIIVRD 
Sbjct: 971  QKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDA 1030

Query: 598  ARFHHFKDGSCSCMDYW 614
             RFHHF+ G+CSC DYW
Sbjct: 1031 YRFHHFEGGACSCKDYW 1047



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 194/401 (48%), Gaps = 20/401 (4%)

Query: 25  RNEGSFNNHSSLLSSLTEC----KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
            N G   NH +L   L  C     S+ + +++H+Q L+           +  +++ F  F
Sbjct: 59  ENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDN---NACLSEKLLDFYLF 115

Query: 81  -ADLDYAFRVFYQIENPNSFTWNTLIRACA-RSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
             DLD A +VF ++     FTWN +I+  A RS+  K     LF RM+ + NV P++ TF
Sbjct: 116 KGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGK--VFCLFGRMVNE-NVTPNEGTF 172

Query: 139 PFALKAC-AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
              L+AC     AF   +Q HA I  +GL     + N LI  Y+  G +D A +VFD + 
Sbjct: 173 SGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLY 232

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
            +   SW  MI    +      A++LF  M +L   P  Y F S+ SAC  + +L +G  
Sbjct: 233 LKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 292

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H  +L+       +D  V N+L+ +Y   GSL  A  +F +M +RD  ++N++I G + 
Sbjct: 293 LHGLVLK---LGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQ 349

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
            G  E A++ F R+ + +   P+S T   ++ AC+  G +  G+        +       
Sbjct: 350 CGYGEKAMELFKRMQL-DGLEPDSNTLASLVVACSSDGTLFSGQQ-LHAYTTKLGFASND 407

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +  G L++L A+  +I+ AL+      ++ + V+W  +L A
Sbjct: 408 KIEGALLNLYAKCSDIETALNYFLETEVE-NVVLWNVMLVA 447



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 188/403 (46%), Gaps = 19/403 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQ----LKQIHAQALRTALPQQHKTLLIYSRII 75
           +F    NE    N  +    L  C+  S     ++QIHA+ +   L +   T++    I 
Sbjct: 156 LFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKS--TIVCNPLID 213

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            ++    +D A RVF  +   +  +W  +I   +++ + + +AI LF  M   G ++P  
Sbjct: 214 LYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKN-ECEVEAIRLFCDMYVLG-IMPTP 271

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           + F   L AC  + +   G+Q H  + K G  SD Y+ N+L+  Y   G L  A  +F N
Sbjct: 272 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSN 331

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG 254
           M +R  V++N +I+   Q G  + A++LF+RMQ+   EPD  T  S+  AC+   TL  G
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG 391

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              HAY  +       ++  +  +L+++Y KC  ++ A   F      ++  WN +++ +
Sbjct: 392 QQLHAYTTK---LGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY 448

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            L      + + F ++ +EE   PN  T+  +L  C   G +  G      +I     + 
Sbjct: 449 GLLDDLRNSFRIFRQMQIEE-IVPNQYTYPSILKTCIRLGDLELGEQIHSQII---KTSF 504

Query: 375 VLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L  Y C  L+D+ A+ G +D A  ++     K D V W +++
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMI 546



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 137/297 (46%), Gaps = 13/297 (4%)

Query: 126 IEQGNVLPDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +E   + P+  T  + L+ C     +  +G++ H+ I K G  ++  ++  L+ FY   G
Sbjct: 58  VENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKG 117

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            LD A KVFD M ER++ +WN MI              LF RM      P+  TF  +  
Sbjct: 118 DLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE 177

Query: 244 AC-AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           AC  G     +    HA I+      L    +V N LID+Y + G +D AR+VF+ +  +
Sbjct: 178 ACRGGSVAFDVVEQIHARIIY---QGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLK 234

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           D +SW ++I G + +     A++ F  + V     P    F  VLSAC     +  G   
Sbjct: 235 DHSSWVAMISGLSKNECEVEAIRLFCDMYV-LGIMPTPYAFSSVLSACKKIESLEIGEQL 293

Query: 363 FDVMINEYNITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             +++    +    + Y C  LV L    G++  A H+ SNM  + DAV + +L++ 
Sbjct: 294 HGLVL---KLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQR-DAVTYNTLING 346


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 334/587 (56%), Gaps = 21/587 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L +    + +S  K I+   L+     +     I   +  +A   D+  A  VF  +
Sbjct: 311 SSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDV--YAKCGDMITARDVFNSM 368

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI---EQGNVLPDKHTFPFALKACAYLFA 150
           E  ++ +WN++I    +S D   +A+ LF+ M+   EQ     D  T+   +     L  
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLM-EAMKLFKMMMIMEEQA----DHITYLMLISVSTRLAD 423

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GK  H++  K G+  D+ ++N+LI  YA CG +  + K+F +M     V+WN +I A
Sbjct: 424 LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483

Query: 211 FVQFGEFDSALKL---FRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            V+FG+F + L++    R+ +++  PD  TF      CA LA   LG   H  +LR    
Sbjct: 484 CVRFGDFATGLQVTTQMRKSEVV--PDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           S   ++ + N+LI+MY KCG L+ + +VFE M +RD+ +W  +I  + ++G  E AL+ F
Sbjct: 542 S---ELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETF 598

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +  +    P+S+ F+ ++ AC+H G+V EG   F+ M   Y I P++EHY C+VDLL+
Sbjct: 599 ADME-KSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLS 657

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R+  I +A   +  MP+KPDA IW S+L AC +    +  +E V++++IE       G  
Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRAC-RTSGDMETAERVSRRIIELNPDD-PGYS 715

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +L S  YA+ R+W+ V L+RK + DK +TK PG S IE+    H F +GD S PQ++ IY
Sbjct: 716 ILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIY 775

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L+++   +   GY PD  + +   E ++ K+  +  HSERLAIA G+LN +PG P++V
Sbjct: 776 KSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQV 835

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCHEVTKLIS+I   EI+VRD  RFH FKDG+CSC D W
Sbjct: 836 MKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 194/383 (50%), Gaps = 17/383 (4%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE-NPN 97
           +L+   ++++L++IHA  L  +L            I  ++ F +   +  VF ++    N
Sbjct: 13  ALSSSSNLNELRRIHA--LVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKN 70

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
            + WN++IRA +++    P+A+  + ++ E   V PDK+TFP  +KACA LF    G   
Sbjct: 71  VYLWNSIIRAFSKN-GLFPEALEFYGKLRES-KVSPDKYTFPSVIKACAGLFDAEMGDLV 128

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           +  I   G  SD+++ N+L+  Y+  G L  A +VFD M  R LVSWN +I  +   G +
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 218 DSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           + AL+++  ++     PD +T  S+  A   L  +  G   H + L+     + + V+VN
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALK---SGVNSVVVVN 245

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N L+ MY K      AR+VF+ M  RD  S+N++I G+      E +++ F  L   + F
Sbjct: 246 NGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--LENLDQF 303

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLARAGNIDE 394
            P+ +T   VL AC H   +S  +  ++ M+       VLE      L+D+ A+ G++  
Sbjct: 304 KPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKA---GFVLESTVRNILIDVYAKCGDMIT 360

Query: 395 ALHLVSNMPMKPDAVIWRSLLDA 417
           A  + ++M  K D V W S++  
Sbjct: 361 ARDVFNSMECK-DTVSWNSIISG 382



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 163/333 (48%), Gaps = 10/333 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF +++  +S ++NT+I    + ++   +++ +F   ++Q    PD  T    L+AC
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYLK-LEMVEESVRMFLENLDQFK--PDLLTVSSVLRAC 317

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
            +L   S  K  + ++ K G V +  + N LI  YA CG +  A  VF++M  +  VSWN
Sbjct: 318 GHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWN 377

Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  ++Q G+   A+KLF+ M I+ E  D  T+  + S    LA L  G   H+  ++ 
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIK- 436

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               +  D+ V+N+LIDMY KCG +  + ++F SM   D  +WN++I      G     L
Sbjct: 437 --SGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGL 494

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           +   ++   E   P+  TF+  L  C        G++    ++  +     L+    L++
Sbjct: 495 QVTTQMRKSE-VVPDMATFLVTLPMCASLAAKRLGKEIHCCLL-RFGYESELQIGNALIE 552

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + ++ G ++ +  +   M  + D V W  ++ A
Sbjct: 553 MYSKCGCLENSSRVFERMSRR-DVVTWTGMIYA 584



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 12/227 (5%)

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI----HFYASCGHLDLANKVFD 194
           PF  +A +     ++ ++ HA +   GL S  + +  LI    HF      L +  +V  
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSL 253
               +++  WN +I AF + G F  AL+ + ++ +    PD YTF S+  ACAGL    +
Sbjct: 68  ---AKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEM 124

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   +  IL   D    +D+ V N+L+DMY + G L  ARQVF+ MP RDL SWNS+I G
Sbjct: 125 GDLVYEQIL---DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISG 181

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           ++ HG  E AL+ +  L       P+S T   VL A  +  +V +G+
Sbjct: 182 YSSHGYYEEALEIYHEL-KNSWIVPDSFTVSSVLPAFGNLLVVKQGQ 227


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/584 (35%), Positives = 332/584 (56%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           + S++++  + K+++  + IHA   R+ L       L+ S I  +     +  A  VF +
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGD--AFLLNSLIHMYCKCGAVSDARHVFDK 120

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           + + +  +W  LI   A++     +AI L   M+ +    P+  TF   LKA       S
Sbjct: 121 MPSRDVVSWTYLIAGYAQNY-MPAEAIGLLPDML-RARFRPNGFTFTSLLKATGACGGCS 178

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q HA   K     DVY+ ++L+  YA C  +D+A  VFD ++ ++ VSWN +I  F 
Sbjct: 179 IGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFA 238

Query: 213 QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           +  + ++ L  F  MQ   F    +T+ S+ SA A +  L  G W HA++++        
Sbjct: 239 RKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQK---L 295

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              V N+++ MY K GS+  AR+VF+ M KRDL +WN+++   A +G  + A+ +F+  +
Sbjct: 296 TAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEE-I 354

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +     N ITF+ VL+AC+H G+V EG+ YFD M+ +YN+ P ++HY   VDLL RAG 
Sbjct: 355 RKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGL 413

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + EAL  V  MPM+P A +W +LL AC + H +  + +  A  V E +    +G  VLL 
Sbjct: 414 LKEALIFVFKMPMEPTAAVWGALLGAC-RMHKNAKMGQYAADHVFELDPDD-TGPPVLLY 471

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YAS  +WND   VRK+M   GV KEP CS ++I+   H F A D +HP++  IY   +
Sbjct: 472 NIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWE 531

Query: 512 LIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
            I+ ++K  GY P+ +   + ++E +  +++ L+ HSE++A+A  ++N+  G  IR+ KN
Sbjct: 532 EINMRIKKAGYVPNTAHVLLHINEQE--RETKLKYHSEKIALAFALINMPAGASIRIMKN 589

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+C DCH   K +S++F  EI+VRD  RFHHF +GSCSC DYW
Sbjct: 590 IRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 24/359 (6%)

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
           + + HK L  + R IH  +      A      I  P+S   +T +R     +D       
Sbjct: 1   MKKHHKFLFFFHRYIHRRTSKPYTSAAHRAVPISFPSSPASSTGLR----ELD------- 49

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
               ++  G + P    +   + ACA     +  +  HAH+ +  L  D ++ NSLIH Y
Sbjct: 50  ----LLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMY 105

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQ 239
             CG +  A  VFD M  R +VSW  +I  + Q      A+ L   M +  F P+G+TF 
Sbjct: 106 CKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFT 165

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+  A       S+G   HA  ++   ++   DV V ++L+DMY +C  +D+A  VF+ +
Sbjct: 166 SLLKATGACGGCSIGEQMHALAVK---YNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
             ++  SWN++I GFA     E  L  F  +     F     T+  + SA    G + +G
Sbjct: 223 VSKNEVSWNALIAGFARKADGETTLMKFAEM-QRNGFGATHFTYSSMFSAFARIGALEQG 281

Query: 360 RDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           R     +I     +T  + +   ++ + A++G++ +A  +   M  K D V W ++L A
Sbjct: 282 RWVHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 337


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 344/592 (58%), Gaps = 16/592 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFAD-LD 84
           E  F  + S+L+     +++ + +++H   ++T  LP    ++ + +R+I   +  D L 
Sbjct: 59  EVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLP----SVYLRTRLIVLYNKCDCLG 114

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A  +F ++   N  +W  +I A ++   A  +A+ LF  M+ + +  P+  TF   L +
Sbjct: 115 DARGMFDEMPQRNVVSWTAMISAYSQRGFAF-EALNLFVEML-RSDTEPNHFTFATILTS 172

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C     F  G+Q H+   KR   S +++ +SL+  YA  G +  A+ VF  + ER +V+ 
Sbjct: 173 CYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVAC 232

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
             +I  + Q G  + ALKLFR++QI     +  T+ S+ +A +GLA L+ G   H+++LR
Sbjct: 233 TAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLR 292

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
              +S V   ++ NSLIDMY KCG++  AR++F+SMP+R   SWN++++G++ HG A   
Sbjct: 293 SGQYSYV---VLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREV 349

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCL 382
           L+ F  +  E    P+SIT++ VLS C+H  +   G + F  M+N  + I P + HYGC+
Sbjct: 350 LELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCV 409

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
           VDLL RAG ++EA   +  MP  P A IW SLL + C+ H+ V +   V ++++E E   
Sbjct: 410 VDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGS-CRVHSDVEIGIIVGQKLLELEPE- 467

Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
            +G YV+LS +YASA +W D+  +R LM +K VTKEPG S +E+D I H F A D +HP+
Sbjct: 468 NAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPR 527

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            +++   +  +  K K  GY PD S   + D  ++ K+  L  HSE+LA+A G++    G
Sbjct: 528 REEVANKVKELSIKFKEDGYVPDLS-CVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEG 586

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             IRV KNLR+C DCH   K +SR++   +I+RD+ RFH+   G CSC DYW
Sbjct: 587 TTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 320/545 (58%), Gaps = 11/545 (2%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  F +   L  A R+F  + + +  TWN +I    ++ +   +A+ LF R+ +Q  V
Sbjct: 246 SAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQN-ENFGEAVRLFGRL-QQDGV 303

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             +  TF   L     L + ++GK  H  + + G   D  +  +L+  Y  C     A K
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWK 363

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLAT 250
           +F +M  + +++W VM  A+ Q G    AL+LF+ MQ+    P   T  ++   CA LA 
Sbjct: 364 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAA 423

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   H++I+   ++    +++V  +LI+MY KCG +  A  VFE M KRD+  WNS+
Sbjct: 424 LQKGRQIHSHII---ENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSM 480

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           +  +A HG  +  L+ F+++ ++     ++++FV VLSA +H G V++G  YF  M+ ++
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLD-GVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 539

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMP-MKPDAVIWRSLLDACCKKHASVVLSE 429
           +ITP  E YGC+VDLL RAG I EA+ +V  +    PD ++W +LL AC + H     ++
Sbjct: 540 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGAC-RTHNKTDQAK 598

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A+QV+E +    SG YV+LS VYA+A  W+ V  +RKLM  +GV KEPG SSIEI   
Sbjct: 599 AAAEQVLERDPS-HSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNR 657

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            HEF  GD SHP+   IY  LD+++ ++++ GY PD ++  + D  D+ K+  L  HSER
Sbjct: 658 VHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPD-TKMILHDVEDERKEDMLFYHSER 716

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LAIA G+++  PG P+RV KNLRVC DCH  TK IS++   EI+VRD  RFH+FKDG CS
Sbjct: 717 LAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCS 776

Query: 610 CMDYW 614
           C DYW
Sbjct: 777 CKDYW 781



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 160/328 (48%), Gaps = 11/328 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           +LL   +  K++   +++H         Q +   L+   +I  +A    +  A +VF  +
Sbjct: 9   ALLQRCSSAKNVDHGRRVHWHVRDRGFEQNN---LVCGHLIQMYAQCGSVPEAQQVFEIL 65

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           E  + F W  +I    +  D   +A+ +F +M E+ +V+P K T+   L ACA   +   
Sbjct: 66  ERKDVFAWTRMIGIYCQQGDYD-RALGMFYQMQEE-DVMPTKVTYVAILNACASTESLKD 123

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G + H  I ++G   DV++  +LI+ Y  CG +  A   F  +  R +VSW  MI A VQ
Sbjct: 124 GMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQ 183

Query: 214 FGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             +F  A  L+RRMQ+    P+  T  ++ +A      LS G + +  +       + +D
Sbjct: 184 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLV---SSGVMESD 240

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V NS ++M+   G L  AR++FE M  RD+ +WN +I  +  +     A++ F RL  
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRL-Q 299

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGR 360
           ++    N ITFV +L+       +++G+
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGK 327



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 7/280 (2%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD   F   L+ C+       G++ H H+  RG   +  +   LI  YA CG +  A +V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           F+ +  + + +W  MI  + Q G++D AL +F +MQ     P   T+ +I +ACA   +L
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             GM  H  IL+        DV V  +LI+MY KCGS+  A   F+ +  RD+ SW ++I
Sbjct: 122 KDGMEIHGQILQ---QGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMI 178

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
                H +   A   + R+ + +   PN IT   V +A      +SEG+  +  +++   
Sbjct: 179 AACVQHDQFALARWLYRRMQL-DGVVPNKITLYTVFNAYGDPNYLSEGKFVYG-LVSSGV 236

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           +   +      V++   AG + +A  L  +M +  D V W
Sbjct: 237 MESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTW 275


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/546 (38%), Positives = 313/546 (57%), Gaps = 27/546 (4%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A    L  A R+F ++   + F W  ++    ++     +A  +F+ M       P
Sbjct: 253 ITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN-GMLDEATRIFEEM-------P 304

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +K+   +      Y+   SQ  +    +F +    +    N+++  YA CG++D A  +F
Sbjct: 305 EKNEVSWNAMIAGYVQ--SQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSIT-----SACAGL 248
           D M +R  +SW  MI  + Q G+ + AL LF +M+     DG            S+CA +
Sbjct: 363 DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK----RDGGILNRSALACALSSCAEI 418

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           A L LG   H  +++       T  +  N+L+ MY KCGS++ A  VFE + ++D+ SWN
Sbjct: 419 AALELGKQLHGRLVKA---GFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWN 475

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           ++I G+A HG  + AL  F+ + +  +  P+ +T VGVLSAC+H G V +G +YF+ M  
Sbjct: 476 TMIAGYARHGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQ 533

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
            Y IT   +HY C++DLL RAG +DEAL+L+ +MP  PDA  W +LL A  + H    L 
Sbjct: 534 NYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGAS-RIHGDTELG 592

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           E+ A++V E E    SG+YVLLS +YA++ RW +V  +R  M DKGV K PG S +EI  
Sbjct: 593 EKAAEKVFEMEPD-NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             H F  GD SHP+ ++IY +L+ +D +LK  G+    ++  + D  ++ K+  L+ HSE
Sbjct: 652 KTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSS-TKLVLHDVEEEEKEHMLKYHSE 710

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LA+A GIL++ PG PIRV KNLRVC+DCH   K IS+I   +IIVRD  RFHHF +GSC
Sbjct: 711 KLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSC 770

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 771 SCGDYW 776



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 171/375 (45%), Gaps = 37/375 (9%)

Query: 64  QHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
           + ++ + Y+ +I  + S    D A +VF ++ + +  +WN ++    ++ +    A  LF
Sbjct: 87  RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSA-ARALF 145

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK--QAHAHIFKRGLVSDVYINNSLIHFY 180
                  N +P+K    +     A L  F+Q    +    IF + LV +    N L+  Y
Sbjct: 146 -------NQMPEKDVVSWN----AMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAY 194

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240
              G ++ A ++FD+ ++  +VSWN ++  +V+    D A  LF RM +    D  ++  
Sbjct: 195 VQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV---RDKISWNI 251

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + +  A    LS          R  +   + DV    +++  + + G LD A ++FE MP
Sbjct: 252 MITGYAQNGLLSEAR-------RLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +++  SWN++I G+    + E A + FD++    + S N  T V   + C   G + + +
Sbjct: 305 EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWN--TMVTGYAQC---GNIDQAK 359

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             FD M     I+     +  ++   A++G  +EALHL   + MK D  I      AC  
Sbjct: 360 ILFDEMPQRDCIS-----WAAMISGYAQSGQSEEALHLF--IKMKRDGGILNRSALACAL 412

Query: 421 KHASVVLSEEVAKQV 435
              + + + E+ KQ+
Sbjct: 413 SSCAEIAALELGKQL 427



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 52/248 (20%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           SD+   N  I  Y   G  + A  VF+ M  RS V++N MI  ++   +FD A K+F +M
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
                PD                                     D++  N ++  Y K G
Sbjct: 118 -----PD------------------------------------RDLISWNVMLSGYVKNG 136

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           +L  AR +F  MP++D+ SWN+++ GFA +G  E A K FD+++V+     N I++ G+L
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK-----NEISWNGLL 191

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SA    G + + R  FD  + ++ I      + CL+    R   +D+A  L   MP++ D
Sbjct: 192 SAYVQNGRIEDARRLFDSKM-DWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVR-D 245

Query: 408 AVIWRSLL 415
            + W  ++
Sbjct: 246 KISWNIMI 253



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 162/372 (43%), Gaps = 63/372 (16%)

Query: 86  AFRVFYQIENPNSFTWNTLIRA--------CARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A  VF  +   ++ T+N +I          CAR V         F++M       PD+  
Sbjct: 79  ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKV---------FEKM-------PDRDL 122

Query: 138 FPFALKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
             + +    Y+     G  + A  +F +    DV   N+++  +A  G ++ A K+FD M
Sbjct: 123 ISWNVMLSGYV---KNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
           L ++ +SWN ++ A+VQ G  + A +LF             ++ ++  C       +G +
Sbjct: 180 LVKNEISWNGLLSAYVQNGRIEDARRLF--------DSKMDWEIVSWNCL------MGGY 225

Query: 257 AHAYILRHC----DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
                L       D   V D +  N +I  Y + G L  AR++FE +P RD+ +W +++ 
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           GF  +G  + A + F     EE    N +++  +++       + + R+ FD M +    
Sbjct: 286 GFVQNGMLDEATRIF-----EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS 340

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           +     +  +V   A+ GNID+A  L   MP + D + W +++      +A    SEE  
Sbjct: 341 S-----WNTMVTGYAQCGNIDQAKILFDEMPQR-DCISWAAMISG----YAQSGQSEEAL 390

Query: 433 KQVI--ESEGGI 442
              I  + +GGI
Sbjct: 391 HLFIKMKRDGGI 402


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/636 (36%), Positives = 342/636 (53%), Gaps = 66/636 (10%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
           S+  +  N G   + ++  SSLT C  +S L   KQ+HAQ +R+ LP       + S ++
Sbjct: 280 SVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS-LPCIDP--YVASAMV 336

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
             +A       A RVF  + + N+ +W  LI    +      +++ LF +M  +   + D
Sbjct: 337 ELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQ-YGCFSESLELFNQMRAELMTV-D 394

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           +      +  C+        +Q H+   K G    V I+NSLI  YA CG+L  A  +F 
Sbjct: 395 QFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFS 454

Query: 195 NMLERSLVSW-------------------------------NVMIDAFVQFGEFDSALKL 223
           +M ER +VSW                               N M+ A++Q G  +  LK+
Sbjct: 455 SMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKM 514

Query: 224 FRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +  M    +  PD  T+ ++   CA +    LG     + ++     L+ D  V N++I 
Sbjct: 515 YSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKV---GLILDTSVMNAVIT 571

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG +  AR++F+ + ++DL SWN++I G++ HG  + A++ FD ++ ++   P+ I
Sbjct: 572 MYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDML-KKGAKPDYI 630

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           ++V VLS+C+H G+V EG+ YFD++  ++N++P LEH+ C+VDLLARAGN+ EA +L+  
Sbjct: 631 SYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDE 690

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MPMKP A +W +LL A CK H +  L+E  AK + + +    SG Y+LL+++YA A +  
Sbjct: 691 MPMKPTAEVWGALLSA-CKTHGNNELAELAAKHLFDLDSPD-SGGYMLLAKIYADAGKSV 748

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
           D   VRKLM DKG+ K PG S +E+    H F A D SHPQ   I   LD + EK+   G
Sbjct: 749 DSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLG 808

Query: 522 YTPDYSQAAMVDELDDGKQSSLRL---HSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           Y                +  SLR    HSE+LA+A GI+NL   MPI + KNLR+C DCH
Sbjct: 809 YV---------------RTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCH 853

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            V KLIS +   E ++RD  RFHHFK GSCSC DYW
Sbjct: 854 TVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 11/304 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  +A    +D+A  +F  +   +  +WN ++ A ++S  A+ +A+ +   M  +G V
Sbjct: 233 SMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAR-EALSVAVDMHNRG-V 290

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             D  T+  +L ACA L +   GKQ HA + +     D Y+ ++++  YA CG    A +
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           VF ++ +R+ VSW V+I  F+Q+G F  +L+LF +M+  L   D +   +I S C+    
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           + L    H+  L+   H+    V+++NSLI MY KCG+L  A  +F SM +RD+ SW  +
Sbjct: 411 MCLARQLHSLSLKS-GHTRA--VVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGM 467

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           +  ++  G    A ++FD +        N IT+  +L A    G   +G   +  M+ E 
Sbjct: 468 LTAYSQVGNIGKAREFFDGMSTR-----NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEK 522

Query: 371 NITP 374
           ++ P
Sbjct: 523 DVIP 526



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 163/376 (43%), Gaps = 45/376 (11%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLP 133
           +A    L  A  +F ++   +  +WNTL+       R +DA       F  M   G+ LP
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMES----FVSMRRSGDSLP 160

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK-- 191
           +  TF  A+K+C  L       Q    + K G   D  +   ++  +  CG +D A+K  
Sbjct: 161 NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQF 220

Query: 192 -----------------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
                                        +F++M ER +VSWN+M+ A  Q G    AL 
Sbjct: 221 SQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALS 280

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +   M       D  T+ S  +ACA L++L  G   HA ++R        D  V +++++
Sbjct: 281 VAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLP---CIDPYVASAMVE 337

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           +Y KCG    AR+VF S+  R+  SW  +I GF  +G    +L+ F+++   E  + +  
Sbjct: 338 LYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRA-ELMTVDQF 396

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
               ++S C++R  +   R    + +   +   V+     L+ + A+ GN+  A  + S+
Sbjct: 397 ALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVIS-NSLISMYAKCGNLQNAESIFSS 455

Query: 402 MPMKPDAVIWRSLLDA 417
           M  + D V W  +L A
Sbjct: 456 MEER-DIVSWTGMLTA 470



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 146/312 (46%), Gaps = 13/312 (4%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSR 73
           Q HS S+ + +      +N  SL+S   +C ++   + I +      +      L  YS+
Sbjct: 416 QLHSLSLKSGHTRAVVISN--SLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQ 473

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           +       ++  A   F  +   N  TWN ++ A  +   A+   + ++  M+ + +V+P
Sbjct: 474 V------GNIGKAREFFDGMSTRNVITWNAMLGAYIQH-GAEEDGLKMYSAMLTEKDVIP 526

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  T+    + CA + A   G Q   H  K GL+ D  + N++I  Y+ CG +  A K+F
Sbjct: 527 DWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIF 586

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D +  + LVSWN MI  + Q G    A+++F  M +   +PD  ++ ++ S+C+    + 
Sbjct: 587 DFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQ 646

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSII 311
            G +    + R  DH++   +   + ++D+  + G+L  A+ + + MP +     W +++
Sbjct: 647 EGKFYFDMLKR--DHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALL 704

Query: 312 LGFALHGRAEAA 323
                HG  E A
Sbjct: 705 SACKTHGNNELA 716



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 136/342 (39%), Gaps = 75/342 (21%)

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL---------DL--- 188
           AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L         D+   
Sbjct: 34  ALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEP 93

Query: 189 --------------------ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                               A ++F  M  R + SWN ++  + Q G F  A++ F  M+
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 229 ILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
              +  P+ +TF     +C  L    + +     + +        D  V   ++DM+ +C
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTK---FGFQGDPDVATGIVDMFVRC 210

Query: 287 GSLDIAR-------------------------------QVFESMPKRDLTSWNSIILGFA 315
           G++D A                                ++FESMP+RD+ SWN ++   +
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             GRA  AL     +        +S T+   L+AC     +  G+     +I      P 
Sbjct: 271 QSGRAREALSVAVDM-HNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSL---PC 326

Query: 376 LEHY--GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++ Y    +V+L A+ G   EA  + S++  + + V W  L+
Sbjct: 327 IDPYVASAMVELYAKCGCFKEARRVFSSLRDR-NTVSWTVLI 367



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +V+ +N +++ Y K GSL  A ++F  MP+RD+TSWN+++ G+   GR   A++ F  + 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 PN+ TF   + +C   G           ++ ++      +    +VD+  R G 
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLG-LLTKFGFQGDPDVATGIVDMFVRCGA 212

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           +D A    S +  +P      S+L    K + 
Sbjct: 213 VDFASKQFSQIE-RPTVFCRNSMLAGYAKSYG 243


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/542 (38%), Positives = 319/542 (58%), Gaps = 13/542 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +  F D++ A  VF ++   +  +WNT++    ++ +A+  A  +F  M   G V  D+ 
Sbjct: 169 YFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEAR-GAFEVFGDMRRDGFV-GDRT 226

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRG---LVSDVYINNSLIHFYASCGHLDLANKVF 193
           T    L AC  +     GK+ H ++ + G    V + ++ NS+I  Y +C  +  A K+F
Sbjct: 227 TLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLF 286

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLS 252
           + +  + +VSWN +I  + + G+   AL+LF RM ++   PD  T  S+ +AC  ++ L 
Sbjct: 287 EGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALR 346

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG    +Y+++      V +V+V  +LI MY  CGSL  A +VF+ MP+++L +   ++ 
Sbjct: 347 LGATVQSYVVKR---GYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVT 403

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           GF +HGR   A+  F  ++  +  +P+   F  VLSAC+H G+V EG++ F  M  +Y++
Sbjct: 404 GFGIHGRGREAISIFYEML-GKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSV 462

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P   HY CLVDLL RAG +DEA  ++ NM +KP+  +W +LL AC + H +V L+   A
Sbjct: 463 EPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSAC-RLHRNVKLAVISA 521

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           +++ E      SG YV LS +YA+ RRW DV  VR L+  + + K P  S +E++ + H+
Sbjct: 522 QKLFELNPDGVSG-YVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQ 580

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           FF GDTSH Q+  IY  L  ++E+LK  GY PD S   + D  ++ K+  L  HSERLA+
Sbjct: 581 FFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTS-LVLYDVEEEIKEKMLWDHSERLAL 639

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A  ++N  PG  IR+ KNLRVC DCH V K+IS++ N EII+RD  RFHHF+DG CSC  
Sbjct: 640 AFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGG 699

Query: 613 YW 614
           YW
Sbjct: 700 YW 701



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 198/373 (53%), Gaps = 6/373 (1%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
            +LL SLT  KS++Q  Q+HA  + T    +  T L       +A    + YA  +F QI
Sbjct: 26  GTLLQSLTNSKSLTQALQLHAH-VTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQI 84

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              NSF WN++IR  A + ++  +A+ L+ +M+  G   PD  T+PF LKAC  L     
Sbjct: 85  VLKNSFLWNSMIRGYACN-NSPSRALFLYLKMLHFGQK-PDNFTYPFVLKACGDLLLREM 142

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G++ HA +   GL  DVY+ NS++  Y   G ++ A  VFD ML R L SWN M+  FV+
Sbjct: 143 GRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVK 202

Query: 214 FGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            GE   A ++F  M+   F  D  T  ++ SAC  +  L +G   H Y++R+ +   V +
Sbjct: 203 NGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCN 262

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + NS+IDMYC C S+  AR++FE +  +D+ SWNS+I G+   G A  AL+ F R+VV
Sbjct: 263 GFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVV 322

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
             +  P+ +T + VL+ACN    +  G      ++    +  V+     L+ + A  G++
Sbjct: 323 VGAV-PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTA-LIGMYANCGSL 380

Query: 393 DEALHLVSNMPMK 405
             A  +   MP K
Sbjct: 381 VCACRVFDEMPEK 393


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/600 (37%), Positives = 344/600 (57%), Gaps = 17/600 (2%)

Query: 20   IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
            IF+  R   S  N  +L S L     +S +   K IHA +++T    +     +Y  ++ 
Sbjct: 619  IFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERH---VYGALLD 675

Query: 77   -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
             +A   +++ A   F  + N +   W+ +I   A+  +   QA  LF RM+ + +V P++
Sbjct: 676  MYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQ-CNQNEQAFELFIRMM-RSSVSPNE 733

Query: 136  HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
             +    L+ACA +     GKQ H H  K G  S++++ N+LI  YA C  ++ + ++F +
Sbjct: 734  FSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSS 793

Query: 196  MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-YTFQSITSACAGLATLSLG 254
            + + + VSWN +I  + + G  ++AL +FR M+    P    T+ S+  ACA  A+++  
Sbjct: 794  LRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHV 853

Query: 255  MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
               H  I +   +S   D +V+NSLID Y KCG +  AR++FE++ + DL SWN+II G+
Sbjct: 854  GQVHCLIEKSTFNS---DTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGY 910

Query: 315  ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            A+HG+A  A + FD ++ + S   N ITFV +LS C   G+VS+G   FD M  ++ I P
Sbjct: 911  AVHGQAAMAQELFD-MMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEP 969

Query: 375  VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             +EHY C+V LL RAG +++AL+ + ++P  P A++WR+LL +C   H +V L    A++
Sbjct: 970  SMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIV-HKNVELGRFSAEK 1028

Query: 435  VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
            V+E E       YVLLS +Y++A   + V   RK M + GV KEPG S +EI G  H F 
Sbjct: 1029 VLEIEPQD-ETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFS 1087

Query: 495  AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
             G   HP  + I   L+ ++ K    GY PD  +  + D  ++ K   L +HSERLA+A 
Sbjct: 1088 VGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEV-LHDLEEEQKVRMLWVHSERLALAY 1146

Query: 555  GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            G++   PG PIR+ KNLR C DCH + K+IS+I   EIIVRD  RFHHF++G+CSC DYW
Sbjct: 1147 GLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 137/289 (47%), Gaps = 17/289 (5%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANK 191
           D + +   L+ C        G+  H H+ + G ++  D++  N L++ Y   G    A++
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           VFD + ER++VS+  ++      GEF+ A  LF+R++    E + +   ++      + T
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L L    HA     C      +  V ++LID Y  CG +  AR+VF+ +  +D  +W ++
Sbjct: 547 LGLAWGVHACA---CKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAM 603

Query: 311 ILGFALHGRAEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-- 367
           +  ++ +   E  L+ F ++ V  S  +P ++T V   + C    ++ +G     V    
Sbjct: 604 VSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLY 663

Query: 368 -NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             E ++      YG L+D+ A+ GNI++A  L   M    D ++W  ++
Sbjct: 664 DTERHV------YGALLDMYAKCGNIEDA-RLAFEMVTNDDVILWSLMI 705


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 334/591 (56%), Gaps = 15/591 (2%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G   N  +L S+L  C  M+     +Q+H+  ++  +     + L    I  ++    +D
Sbjct: 207 GMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSD--SFLGVGLIDMYSKCNSMD 264

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A  VF  +   +   WN +I   +++ +   +A  LF  M  +G +  ++ T    LK+
Sbjct: 265 DARLVFKLMPERDMIAWNAVISGHSQN-EEDEEAASLFPLMHTEG-IGFNQTTLSTVLKS 322

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
            A L A    +Q HA   K G   D Y+ NSLI  Y  CGH++ A +VF+      LV +
Sbjct: 323 IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
             ++ A+ Q G+ + AL+L+  MQ    +PD +   S+ +ACA L+    G   H +IL+
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                 ++D+   NSL++MY KCGS++ A   F  +P R + SW+++I G A HG  + A
Sbjct: 443 F---GFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEA 499

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L+ F +++ +    PN IT V VL ACNH G+V+E + YF+ M   + I P+ EHY C++
Sbjct: 500 LQLFKQML-KVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMI 558

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL RAG ++ A+ LV+ MP + +A++W +LL A  + H ++ L E+ A+ ++  E    
Sbjct: 559 DLLGRAGKLEAAMELVNKMPFQANALVWGALLGAA-RIHKNIDLGEQAAEMLLALEPEK- 616

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           SG +VLL+ +YAS   W+ V  VR+LM D  V KEPG S +E+    + F  GD SH ++
Sbjct: 617 SGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRS 676

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
            +IY  LD + + LK  GY P   +  + D     K+  L  HSE+LA+A G++   PG 
Sbjct: 677 TEIYAKLDELSDLLKKAGYVP-MVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGA 735

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLR+C DCH V K IS+I + EIIVRD  RFHHF++GSCSC +YW
Sbjct: 736 PIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 187/403 (46%), Gaps = 18/403 (4%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMS---QLKQIHAQALRTALPQQHKTLLIYSRII 75
           S+F++    G   N  SL S +  C  +    Q ++IH   ++  L          + + 
Sbjct: 97  SLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIK--LGYDSDAFSANALVD 154

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    L+ A  VF +I  P+  +WN +I  C    +   +A+ L + M + G + P+ 
Sbjct: 155 MYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLH-EYHHRALELLREMNKSG-MCPNM 212

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T   ALKACA +     G+Q H+ + K  + SD ++   LI  Y+ C  +D A  VF  
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL 272

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY---TFQSITSACAGLATLS 252
           M ER +++WN +I    Q  E + A  LF  M    E  G+   T  ++  + A L    
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT--EGIGFNQTTLSTVLKSIAALQANY 330

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           +    HA  L+        D  V NSLID Y KCG ++ A +VFE  P  DL  + S++ 
Sbjct: 331 MCRQIHALSLK---SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVT 387

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            +A  G+ E AL+ +  +  +    P+S     +L+AC       +G+    V I ++  
Sbjct: 388 AYAQDGQGEEALRLYLEM-QDRGIKPDSFVCSSLLNACASLSAYEQGKQ-VHVHILKFGF 445

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              +     LV++ A+ G+I++A    S +P++   V W +++
Sbjct: 446 MSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMI 487



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 7/285 (2%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++  FP  LKAC        GKQ H  +   G  SD ++ NSL+  YA CG    A  +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D + +RS+VSWN +   +V       A+ LF  M +    P+ ++  S+ + C GL    
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H Y+++    S   D    N+L+DMY K G L+ A  VF+ + K D+ SWN+II 
Sbjct: 129 QGRKIHGYLIKLGYDS---DAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G  LH     AL+   R + +    PN  T    L AC    +   GR     +I     
Sbjct: 186 GCVLHEYHHRALELL-REMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +      G L+D+ ++  ++D+A  +   MP + D + W +++  
Sbjct: 245 SDSFLGVG-LIDMYSKCNSMDDARLVFKLMPER-DMIAWNAVISG 287



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 21/228 (9%)

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           + F S+  AC     L LG   H  ++        +D  V NSL+ +Y KCG    AR +
Sbjct: 11  FAFPSVLKACTVTKDLVLGKQVHGIVVVT---GFDSDEFVANSLVILYAKCGGFGDARSL 67

Query: 296 FESMPKRDLTSWNSIILGFA---LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
           F+++P R + SWN++   +    +HG A   +  F  +V+     PN  +   +++ C  
Sbjct: 68  FDAIPDRSVVSWNALFSCYVHSDMHGEA---VSLFHDMVLS-GIRPNEFSLSSMINVCTG 123

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
                +GR     +I     +        LVD+ A+ G +++A  +   +  KPD V W 
Sbjct: 124 LEDSVQGRKIHGYLIKLGYDSDAFS-ANALVDMYAKVGILEDASSVFDEIA-KPDIVSWN 181

Query: 413 SLLDACC---KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           +++  C      H ++ L  E+ K       G+C  ++ L S + A A
Sbjct: 182 AIIAGCVLHEYHHRALELLREMNKS------GMCPNMFTLSSALKACA 223


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/566 (37%), Positives = 328/566 (57%), Gaps = 44/566 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFA 141
           LD A R+  Q    N  +W +LI   +R+   +P  A+  F  M+  G V PD+     A
Sbjct: 187 LDEARRLLVQAPERNVVSWTSLIAGYSRA--GRPADAVYCFNCMLSDG-VAPDEVAVIGA 243

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGL---------VSDVYIN------------------- 173
           L AC+ L     G+  H  + ++ +         + D+Y                     
Sbjct: 244 LSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQK 303

Query: 174 ----NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
               N++I  Y   GH+D+A  +FD M  R ++++N MI  ++  G    AL+LF +M+ 
Sbjct: 304 PEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRR 363

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                D +T  S+ +ACA L  L  G   HA I +     +  DV +  +L+DMY KCG 
Sbjct: 364 HGMRADNFTVVSLLTACASLGALPHGRALHASIEQRI---VEEDVYLGTALLDMYMKCGR 420

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +D A  VF  M +RD+ +W ++I G A +G  + AL+ F ++   + F P S+T++ VL+
Sbjct: 421 VDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMK-RDGFQPTSVTYIAVLT 479

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC+H  ++ EGR +F+ M + + + P +EHYGC++DLLAR+G +DEA+HLV  MPM+P+A
Sbjct: 480 ACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNA 539

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
           VIW S+L AC + H ++ L+   A+ +++        VYV L  +Y  +R+W D   VR 
Sbjct: 540 VIWGSILSAC-RVHKNIDLARHAAEHLLKLAPEE-DAVYVQLYNIYIDSRQWADAKRVRM 597

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           LM ++GV K  G SSI + G  H+F A D SHP T +I   ++ I  +LKS GY+P  S+
Sbjct: 598 LMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSR 657

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
            A VD  ++ K+ +L  HSE++AIA G+++L P +PI + KNLRVC+DCH   KL+S+++
Sbjct: 658 IA-VDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLW 716

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
           N EIIVRDR+RFHHF+DG+CSC D+W
Sbjct: 717 NREIIVRDRSRFHHFRDGACSCNDFW 742



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +L+    +C  ++Q     AQA+  A+ +  K     + I  +     +D A  +F Q+ 
Sbjct: 277 ALIDMYAKCGDIAQ-----AQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMG 331

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  T+N++I     S   +  A+ LF +M   G +  D  T    L ACA L A   G
Sbjct: 332 ARDVITFNSMITGYIHSGRLR-DALQLFMQMRRHG-MRADNFTVVSLLTACASLGALPHG 389

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  HA I +R +  DVY+  +L+  Y  CG +D A  VF  M ER + +W  MI      
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449

Query: 215 GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G    AL+ F +M+   F+P   T+ ++ +AC+  + L  G   H   +R   H L   V
Sbjct: 450 GMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGR-LHFNEMRSL-HKLHPQV 507

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGR---AEAALKYFDR 329
                +ID+  + G LD A  + ++MP + +   W SI+    +H     A  A ++  +
Sbjct: 508 EHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLK 567

Query: 330 LVVEE 334
           L  EE
Sbjct: 568 LAPEE 572



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 177/442 (40%), Gaps = 78/442 (17%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTL---LIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
           +S+ Q  Q+HA  L T+    H+     L+ S     ++   L Y   +F ++ +  +F 
Sbjct: 10  RSVRQASQLHA-LLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFL 68

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK--QAH 158
           ++T +RAC ++       ++L +RM   G V     TF F  + CA       G     H
Sbjct: 69  FDTALRACLQASAGADHPVLLLRRM-RSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLH 127

Query: 159 AHIFKRGLVSDV-YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           A   +  L S    + N LIH YAS G  D A + FD +  +  V W  +I   V++G  
Sbjct: 128 AACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLL 187

Query: 218 DSALKLF----------------------RRMQILF----------EPDGYTFQSITSAC 245
           D A +L                       R    ++           PD        SAC
Sbjct: 188 DEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSAC 247

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL---------------- 289
           + L  L LG   H  + +      +TD LV  +LIDMY KCG +                
Sbjct: 248 SKLKNLDLGRLLHLLVGQ--KRIRMTDNLV-VALIDMYAKCGDIAQAQAVFDAVGRGQKP 304

Query: 290 ----------------DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
                           D+AR +F+ M  RD+ ++NS+I G+   GR   AL+ F ++   
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQM-RR 363

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
                ++ T V +L+AC   G +  GR      I +  +   +     L+D+  + G +D
Sbjct: 364 HGMRADNFTVVSLLTACASLGALPHGR-ALHASIEQRIVEEDVYLGTALLDMYMKCGRVD 422

Query: 394 EALHLVSNMPMKPDAVIWRSLL 415
           EA  +   M  + D   W +++
Sbjct: 423 EATAVFHRMGER-DVHTWTAMI 443


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 329/580 (56%), Gaps = 17/580 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
           L+    +C S+     + AQ L   +PQ  K L  ++ +I  +A+   ++ A ++F ++ 
Sbjct: 104 LIHMYAKCGSL-----VDAQMLFDEIPQ--KDLCSWNTMISGYANVGRIEQARKLFDEMP 156

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + ++F+WN +I     S     +A+ LF+ M E  +   +  T   AL A A + +  +G
Sbjct: 157 HRDNFSWNAVISGYV-SQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRG 215

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K+ H ++ + GL  D  +  +L+  Y  CG L+ A  +FD M ++ +VSW  MI    + 
Sbjct: 216 KEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFED 275

Query: 215 GEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G       LFR  M     P+ YTF  + +ACA LA   +G   H Y+ R          
Sbjct: 276 GRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFS--- 332

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
              ++L+ +Y KCG+ + AR+VF  MP+ DL SW S+I+G+A +G+ + AL++F+ L+  
Sbjct: 333 FAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLL-R 391

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ ITFVGVLSAC H G+V  G +YF  +  ++ +    +HY C++DLLAR+G   
Sbjct: 392 SGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFK 451

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           EA +++ NMPMKPD  +W SLL  C + H ++ L+E  AK + E E       Y+ LS +
Sbjct: 452 EAENIIDNMPMKPDKFLWASLLGGC-RIHGNIELAERAAKALFELEPE-NPATYITLSNI 509

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA+A  W +   VR  M ++G+ K+PG S IEI    H F  GDTSHP+   I+ +L  +
Sbjct: 510 YANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGEL 569

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
            +K+K  GY  D +   + D  ++ K+ ++  HSE+LA+A GI++  PG PI+VFKNLR 
Sbjct: 570 SKKMKEEGYVAD-TNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRT 628

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
           C DCH   K IS+I   +IIVRD  RFH F DGSCSC DY
Sbjct: 629 CVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 134/319 (42%), Gaps = 45/319 (14%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P    +   + AC        GK+ HAH      +  + I+N LIH YA CG L  A  +
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG----L 248
           FD + ++ L SWN MI  +   G  + A KLF  M      D +++ ++ S        +
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMP---HRDNFSWNAVISGYVSQGWYM 177

Query: 249 ATLSL--------------------------------GMWAHAYILRHCDHSLVTDVLVN 276
             L L                                G   H Y++R     L  D +V 
Sbjct: 178 EALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIR---SGLELDEVVW 234

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            +L+D+Y KCGSL+ AR +F+ M  +D+ SW ++I      GR +     F R ++    
Sbjct: 235 TALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLF-RDLMGSGV 293

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            PN  TF GVL+AC        G++    M       P       LV + ++ GN + A 
Sbjct: 294 RPNEYTFAGVLNACADLAAEQMGKEVHGYM-TRVGYDPFSFAASALVHVYSKCGNTETAR 352

Query: 397 HLVSNMPMKPDAVIWRSLL 415
            + + MP +PD V W SL+
Sbjct: 353 RVFNQMP-RPDLVSWTSLI 370



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 47/247 (19%)

Query: 207 MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +I+ F Q      A+    R+    +P    + ++ +AC     L LG   HA+      
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIP---QPSPRLYSTLIAACLRHRKLELGKRVHAHTKAS-- 92

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
            + +  ++++N LI MY KCGSL  A+ +F+ +P++DL SWN++I G+A  GR E A K 
Sbjct: 93  -NFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKL 151

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-------------------- 366
           FD +   ++FS N+     V+S    +G   E  D F +M                    
Sbjct: 152 FDEMPHRDNFSWNA-----VISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAA 206

Query: 367 -----------INEYNITPVLEH----YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
                      I+ Y I   LE     +  L+DL  + G+++EA  +   M  K D V W
Sbjct: 207 AAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK-DIVSW 265

Query: 412 RSLLDAC 418
            +++  C
Sbjct: 266 TTMIHRC 272


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/451 (43%), Positives = 282/451 (62%), Gaps = 8/451 (1%)

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   DV    +++      G +D A +VFD M  R+LVSWN MI  +V+   F  AL++F
Sbjct: 159 GGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVF 218

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M+ L  E +G+   S   AC G   L  G   + ++ +     +  D  +  +++DMY
Sbjct: 219 DEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQS---GIEVDAKLATAVVDMY 275

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
           CKCG +D A  VF+S+P R LT+WN +I GFA+HGR + AL+ F ++      +P+ +T 
Sbjct: 276 CKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAA-GVAPDDVTL 334

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           + VL+AC H G VSEGR Y + +++ + I P  EHYGC+VDL  RAG +DEA  ++  MP
Sbjct: 335 LNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMP 394

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           M PD  +  +LL AC K H  V L E +  +VI+ +    SG YVLL+ + A A RW++V
Sbjct: 395 MDPDLAVLGALLGAC-KIHGDVDLGEAIGWRVIDLDPD-NSGRYVLLANLLAGAGRWDEV 452

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
           G VR+LM ++ V+KE G S IE+DG A EF  G+  HPQ ++IY     +  ++++ GY 
Sbjct: 453 GKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYV 512

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD  +A + D  ++ K+++L  HSE+LAIA G+L  +P   +R+ KNLRVC+DCHE TK 
Sbjct: 513 PDTGEA-LHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKY 571

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +SR+F  EI+VRDR+RFHHFKDG CSC DYW
Sbjct: 572 VSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 328/553 (59%), Gaps = 15/553 (2%)

Query: 64  QHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           Q +  +  S I  +      + + +VF ++ + N+ +W+ +I AC +  D   +   LF+
Sbjct: 42  QSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQD-DRCKEGFSLFR 100

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
           +M+ +G+  P +      L A A + +  +    +  + + GL  D  + ++    +A C
Sbjct: 101 QMLSEGS-RPSRGAI---LNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARC 156

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSI 241
           G +++A K+FD ++ + LV+W   I+A+V+      AL L ++M  Q +F PD  T   +
Sbjct: 157 GRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIF-PDAITLLGV 215

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             AC+ LA+  L    H  I     ++ +  + V  +LID+Y KCGSL  AR+VF+ M +
Sbjct: 216 IRACSTLASFQLAHIVHGIITTGFFYNQL--LAVETALIDLYVKCGSLTYARKVFDGMQE 273

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           R++ +W+++I G+ +HG    AL  FD++  + S  P+ ITFV +LSAC+H G+V+EG +
Sbjct: 274 RNIITWSAMISGYGMHGWGREALNLFDQM--KASVKPDHITFVSILSACSHSGLVAEGWE 331

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            F+ M  ++ +TP  EHY C+VD+L RAG +DEA   +  MP++P+A +W +LL AC + 
Sbjct: 332 CFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGAC-RI 390

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
           H +V L+E VA+ + + +    +G YV+L  +Y    +  +   +R LM ++GV K  G 
Sbjct: 391 HLNVDLAEMVARALFDLDPH-NAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGY 449

Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
           S IEI    + F AGD SHPQT  IY  L+ + ++++  GYTPD +   + D  ++ K+S
Sbjct: 450 SVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDIN-FVLHDVDEETKES 508

Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
            L LHSE+LAI  G+LNL PG  IR+ KNLRVC DCH  TK IS++   EI+VRD  RFH
Sbjct: 509 MLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFH 568

Query: 602 HFKDGSCSCMDYW 614
           HFK+G+CSC DYW
Sbjct: 569 HFKNGACSCRDYW 581



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            + PD  TFPF +KAC+ L  F  G + H  + K G  S V+I+NSLI  Y  C   +L+
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA 249
            +VFD M +++ VSW+ +I A +Q         LFR  Q+L E    +  +I +A A + 
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFR--QMLSEGSRPSRGAILNAMACVR 122

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           +       +  ++   ++ L  D  V ++   M+ +CG +++AR++F+ +  +DL +W +
Sbjct: 123 SHEEADDVYRVVV---ENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWAT 179

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
            I  +        AL    +++++  F P++IT +GV+ AC+             ++   
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQGIF-PDAITLLGVIRACSTLASFQLAHIVHGIITTG 238

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +    +L     L+DL  + G++  A  +   M  + + + W +++  
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQER-NIITWSAMISG 285



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
           +++  +PD +TF  I  AC+ L     G+  H  +++    S    V ++NSLI MY KC
Sbjct: 2   LRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQS---QVFISNSLITMYGKC 58

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
              +++RQVF+ MP ++  SW++II       R +     F +++ E S          +
Sbjct: 59  DKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM 118

Query: 347 LSACNHRGMVSEGRDYFDVMI-NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
               +H     E  D + V++ N  +    ++       + AR G ++ A  L   + M 
Sbjct: 119 ACVRSH----EEADDVYRVVVENGLDFDQSVQ--SAAAGMFARCGRVEVARKLFDGI-MS 171

Query: 406 PDAVIWRSLLDACCK 420
            D V W + ++A  K
Sbjct: 172 KDLVTWATTIEAYVK 186


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 327/588 (55%), Gaps = 26/588 (4%)

Query: 35  SLLSSLTECKSMSQLKQIH----AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           SLL+  T    + +L +IH       L      ++  + +Y R          D A  VF
Sbjct: 367 SLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRC------ESPDDARTVF 420

Query: 91  YQIENPNSFTWNTLIR---ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            Q+E PN  +WN++I     C R  DA    + LF+ M +QG + PD+  F   L AC  
Sbjct: 421 DQLELPNLISWNSMIGIYVQCERHDDA----LQLFRTMQQQG-IQPDRVNFMTILGACTI 475

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                  K  H  + + GL     +  SL++ YA  G LD+A  +   M E+ + +WNV+
Sbjct: 476 GSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVL 535

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I+ +   G    AL+ ++++Q+   P D  TF S+ +AC    +L+ G   H+  +   +
Sbjct: 536 INGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV---E 592

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L +DV+V N+L +MY KCGS++ AR++F+SMP R   SWN ++  +A HG +E  LK 
Sbjct: 593 CGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKL 652

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
             R + +E    N ITFV VLS+C+H G+++EG  YF  + ++  I    EHYGCLVDLL
Sbjct: 653 I-RKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLL 711

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG + EA   +S MP++P  V W SLL AC +    +   +  A +++E + G  S  
Sbjct: 712 GRAGKLQEAEKYISKMPLEPGIVTWASLLGAC-RVQKDLDRGKLAAGKLLELDPG-NSSA 769

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            V+LS +Y+    W +   +R+ M  + V K PG SSI++    HEF   DTSHP+  +I
Sbjct: 770 SVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEI 829

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  ++ +   ++  GY PD ++  + D  ++ K+S L  HSE+LAIA G+++      + 
Sbjct: 830 YDKVEELCFAMREAGYVPD-TKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLH 888

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +FKNLRVC+DCH  TK IS+I   EI+VRD  RFHHF+DGSCSC DYW
Sbjct: 889 IFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 219/440 (49%), Gaps = 34/440 (7%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY---SRIIH 76
           IF   + EG   +  + LS L  C +   L+  H + +R ++ +    L ++   + I  
Sbjct: 248 IFQRMQQEGERCDRVTFLSILDACVNPETLQ--HGKHVRESISETSFELDLFVGTALITM 305

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A     + A +VF +++  N  TW+ +I A A       +A+  F RM++Q  +LP++ 
Sbjct: 306 YARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHC-GEALRYF-RMMQQEGILPNRV 363

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L          +  + H  I + GL     + N+L++ Y  C   D A  VFD +
Sbjct: 364 TFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQL 423

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
              +L+SWN MI  +VQ    D AL+LFR MQ    +PD   F +I  AC      ++G 
Sbjct: 424 ELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGAC------TIGS 477

Query: 256 WAHAYILRH-C--DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
                 L H C  +  L    LV  SL++MY K G LD+A  + + M ++ +T+WN +I 
Sbjct: 478 HGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLIN 537

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+ALHGR+  AL+ + +L + E+   + +TF+ VL+AC     ++EG+     MI+   +
Sbjct: 538 GYALHGRSREALEAYQKLQL-EAIPVDKVTFISVLNACTSSTSLAEGK-----MIHSNAV 591

Query: 373 TPVLEH----YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
              L+        L ++ ++ G+++ A  +  +MP++  AV W  +L A    +A    S
Sbjct: 592 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQA----YAQHGES 646

Query: 429 EEVAKQV--IESEGGICSGV 446
           EEV K +  +E EG   +G+
Sbjct: 647 EEVLKLIRKMEQEGVKLNGI 666



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 174/343 (50%), Gaps = 10/343 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    L  A   F +I   N  +WN +I A + S  +  +A+ LF  M+ +G V P+  
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYS-SYKSFQEALALFHAMLLEG-VAPNAI 59

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L +C        G   HA   +RG   +  +  +L++ Y  CG L  A  VF+ M
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 197 LERSLVSWNVMIDAF-VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
            E+++V+WN M+  + +Q   +  A++LF RM +   + +  TF ++ ++      L  G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
            + H+ + R  +HSL  DV VN +L++ Y KCGSL  AR+VF+ MP R + +WNS+I  +
Sbjct: 180 KFIHSCV-RESEHSL--DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAY 236

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           ++  R+  A   F R+  +E    + +TF+ +L AC +   +  G+ +    I+E +   
Sbjct: 237 SISERSGEAFFIFQRM-QQEGERCDRVTFLSILDACVNPETLQHGK-HVRESISETSFEL 294

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            L     L+ + AR  + ++A  +   M  + + + W +++ A
Sbjct: 295 DLFVGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITA 336



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 26/156 (16%)

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY +CGSL  A   F  +  R++ SWN +I  ++ +   + AL  F  +++ E  +PN+I
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLL-EGVAPNAI 59

Query: 342 TFVGVLSACNHRGMVSEG---------RDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           T V VL++C     + +G         R +F    N    T +L  YG       + G +
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQ---NTLVATALLNMYG-------KCGTL 109

Query: 393 DEALHLVSNMPMKPDAVIWRSL-----LDACCKKHA 423
            +A  +   M  K + V W ++     L  CC K A
Sbjct: 110 LDAQSVFEEMAEK-NVVTWNAMLGVYSLQGCCWKLA 144


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 334/588 (56%), Gaps = 19/588 (3%)

Query: 35  SLLSSLTECKSM---SQLKQIHAQALRTALPQQHKT--LLIYSRIIHFASFADLDYAFRV 89
           ++LS L  C  +   ++L+++HA  +R  L   H T  ++  + I  +     L +A RV
Sbjct: 273 TMLSVLPVCSGLPELAKLRELHAFVVRRGL---HLTGDMVPNALIAAYGRCGCLLHACRV 329

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  I +    +WN LI A A++ +A   AI LF+ M       PD  +    L AC  L 
Sbjct: 330 FDGICSKMVSSWNALIGAHAQNGEAS-AAIELFREMTNACGQKPDWFSIGSLLLACGNLK 388

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               GK AH  I + GL  D +I  SL+  Y  CG   LA  +FD + E+  VSWN MI 
Sbjct: 389 HLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIA 448

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA---CAGLATLSLGMWAHAYILRHCD 266
            + Q G    +L+LFR MQ        +  + TSA   C+ L  + LG   H + L+   
Sbjct: 449 GYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKA-- 506

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  D  +++S+IDMY KCGS+D AR  F+ +  +D  SW  +I G+A++GR + A+  
Sbjct: 507 -DLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGL 565

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           +D++   E   P+  T++G+L AC H GM+ +G  +F  M N   I   LEHY C++ +L
Sbjct: 566 YDKMG-REGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGML 624

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
           +RAG   +A+ L+  MP +PDA I  S+L AC   H  V L ++VA +++E E       
Sbjct: 625 SRAGRFADAVALMEVMPEEPDAKILSSVLSAC-HMHGEVELGKKVADKLLELEPHKAEH- 682

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVL S +YA +R+W+++  VRK++ D GV KEPGCS I+I G  + F AG+ S P+  ++
Sbjct: 683 YVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKV 742

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
                 ++EK+++ GY PD +   + +  ++ K  +LR HSE+ AIA G+L       +R
Sbjct: 743 RKMWYSLEEKIRAAGYAPD-TTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVR 801

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VFKN+R+CKDCH   KLIS++ + EI+VRD+ RFHHF+DG CSC DYW
Sbjct: 802 VFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 211/423 (49%), Gaps = 22/423 (5%)

Query: 32  NHSSLLSSLTECKSMS---QLKQIHAQALRT---ALPQQHKTLL-IYSRIIHFASFADLD 84
           + ++L++ L  C +++     + +H  A+++   A P+    L+ +Y++       AD +
Sbjct: 164 DEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKC---GEMADAE 220

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            AF         N  +WN ++   AR+ +A     +L +  +E+  V  D+ T    L  
Sbjct: 221 CAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPV 280

Query: 145 CAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           C+ L   ++ ++ HA + +RGL ++   + N+LI  Y  CG L  A +VFD +  + + S
Sbjct: 281 CSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSS 340

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILF--EPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           WN +I A  Q GE  +A++LFR M      +PD ++  S+  AC  L  L  G  AH +I
Sbjct: 341 WNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFI 400

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           LR   + L  D  +  SL+ +Y +CG   +AR +F+++ ++D  SWN++I G++ +G   
Sbjct: 401 LR---NGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPG 457

Query: 322 AALKYFDRLVVEESFS-PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
            +L+ F  +  ++    P+ +     L AC+    V  G++     + + ++        
Sbjct: 458 ESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFAL-KADLCEDSFLSS 516

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIE 437
            ++D+ ++ G++D+A      +  K DAV W  ++       +   +V L +++ ++ +E
Sbjct: 517 SIIDMYSKCGSVDDARVFFDRLKAK-DAVSWTVMITGYAVNGRGKEAVGLYDKMGREGME 575

Query: 438 SEG 440
            +G
Sbjct: 576 PDG 578



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 22/338 (6%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY 85
           ++G   +  +L  +L  C+     +Q+HA A +  L       +  S +  +     +D 
Sbjct: 60  SDGVAPDRFTLPPALKSCRG-DDGRQVHAVAAKLGL-ADGDPFVGNSLVSMYGRCGRVDD 117

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ--GNVLPDKHTFPFALK 143
           A +VF  +   N  +WN L+ A A   D + + + LF+  +E   G   PD+ T    L 
Sbjct: 118 AEKVFEGMAGRNLVSWNALMAAVA---DPR-RGLELFRDCLEDLGGTAAPDEATLVTVLP 173

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE----- 198
            CA L     G+  H    K G  +   ++N L+  YA CG +  A   F   LE     
Sbjct: 174 MCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAF---LEAPPGA 230

Query: 199 -RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLG 254
            R++VSWNVM+  + + GE  +A  L R MQ+       D  T  S+   C+GL  L+  
Sbjct: 231 GRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKL 290

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              HA+++R   H  +T  +V N+LI  Y +CG L  A +VF+ +  + ++SWN++I   
Sbjct: 291 RELHAFVVRRGLH--LTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAH 348

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
           A +G A AA++ F  +       P+  +   +L AC +
Sbjct: 349 AQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGN 386



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 122/260 (46%), Gaps = 19/260 (7%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           WN L+   +R+        +L + +     V PD+ T P ALK+C        G+Q HA 
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88

Query: 161 IFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
             K GL   D ++ NSL+  Y  CG +D A KVF+ M  R+LVSWN ++ A     +   
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVA---DPRR 145

Query: 220 ALKLFR----RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            L+LFR     +     PD  T  ++   CA LA    G   H   ++           V
Sbjct: 146 GLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVK---SGWDAAPRV 202

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           +N L+DMY KCG +  A   F   P    R++ SWN ++ G+A +G A AA      + +
Sbjct: 203 SNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQM 262

Query: 333 EESFSP-NSITFVGVLSACN 351
           EE   P + IT + VL  C+
Sbjct: 263 EERGVPADEITMLSVLPVCS 282



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 19/203 (9%)

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE---PDGYTFQSITSACAGLATLSLGMW 256
           SL  WN ++    + G    AL +  R+    +   PD +T      +C G      G  
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQ 84

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA   +        D  V NSL+ MY +CG +D A +VFE M  R+L SWN+++   A 
Sbjct: 85  VHAVAAKLGLAD--GDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD 142

Query: 317 HGRAEAALKYFDRLVVEE---SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNI 372
             R    L+ F R  +E+   + +P+  T V VL  C        GR    + +   ++ 
Sbjct: 143 PRR---GLELF-RDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA 198

Query: 373 TPVLEHYGCLVDLLARAGNIDEA 395
            P + +   LVD+ A+ G + +A
Sbjct: 199 APRVSNV--LVDMYAKCGEMADA 219


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/583 (35%), Positives = 332/583 (56%), Gaps = 13/583 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           + S++++  + K+++  + IH+   R+ L       L+ S I  +     +  A  VF  
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGD--GFLLNSLIHMYCKCGAVSDARHVFDG 122

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I   +  +W  LI   A++ D   +A+ L   M+ +    P   TF   LKA        
Sbjct: 123 IPTRDVVSWTYLITGYAQN-DMPAEALGLLPDML-RARFRPSGFTFTSFLKAAGACGGRG 180

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q HA   K  L  DVY+ ++L+  YA C  +D+A +VFD +  ++ VSWN +I  F 
Sbjct: 181 IGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFA 240

Query: 213 QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + G+ ++ L  F  MQ   F    +T+ S+ SA A +  L  G W HA++++        
Sbjct: 241 RKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQK---L 297

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              V N+++ MY K GS+  AR+VF+ + +RDL +WN+++  FA +G  + A+ +F+  +
Sbjct: 298 TAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEE-I 356

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +     N ITF+ VL+AC+H G+V EG+ YFD M+ +YN+ P ++HY   VDLL RAG 
Sbjct: 357 RKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHYVSFVDLLGRAGL 415

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + EAL  V  MPM+P A +W +LL AC + H +  + +  A  V E +    +G  VLL 
Sbjct: 416 LKEALIFVFKMPMEPTAAVWGALLGAC-RMHKNAKIGQYAADHVFELDPED-TGPPVLLY 473

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YAS  +W+D   VRK+M   GV KEP CS +EI+   H F A D++HP++++IY   +
Sbjct: 474 NIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWE 533

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            ++ ++K  GY P+ +   ++   +  +++ L+ HSE++A+A  ++N+  G  IR+ KN+
Sbjct: 534 EVNTRIKKAGYVPN-TDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNI 592

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+C DCH   + +S +F  EI+VRD  RFHHF +GSCSC DYW
Sbjct: 593 RICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 12/318 (3%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++  G + P    +   + ACA     +  +  H+H+ +  L  D ++ NSLIH Y  CG
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            +  A  VFD +  R +VSW  +I  + Q      AL L   M +  F P G+TF S   
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLK 171

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           A        +G   HA  ++   ++L  DV V ++L+DMY +C  +D+A +VF+ +  ++
Sbjct: 172 AAGACGGRGIGEQMHALAVK---YNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKN 228

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             SWN++I GFA  G  E  L  F  +     F     T+  V SA    G + +GR   
Sbjct: 229 EVSWNALIAGFARKGDGETTLMKFAEM-QRNGFGATHFTYSSVFSALARIGALEQGRWVH 287

Query: 364 DVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK-- 420
             MI     +T  + +   ++ + A++G++ +A  +   +  + D V W ++L A  +  
Sbjct: 288 AHMIKSGQKLTAFVAN--TILGMYAKSGSMVDARKVFDRVDQR-DLVTWNTMLTAFAQYG 344

Query: 421 -KHASVVLSEEVAKQVIE 437
               +V   EE+ K  I+
Sbjct: 345 LGKEAVAHFEEIRKYGIQ 362


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/587 (38%), Positives = 331/587 (56%), Gaps = 21/587 (3%)

Query: 35  SLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +L S+L  C ++  +K   Q+H+  ++  +  +  + +    I  ++    L  A  VF 
Sbjct: 291 TLSSALKACAAIGLVKLGRQLHSALMK--MDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348

Query: 92  QIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
            +   +   WN++I     C   +    +A+ LF  M ++G    ++ T    LK+ A  
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDI----EAMSLFTNMYKEGLEF-NQTTLSTILKSTAGS 403

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            A    +Q H    K G   D Y+ NSL+  Y  C  L+ A KVF+      LV++  MI
Sbjct: 404 QANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMI 463

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A+ Q+G  + ALK++ RMQ    +PD + F S+ +ACA L+    G   H ++L+ C  
Sbjct: 464 TAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK-C-- 520

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L++DV   NSL++MY KCGS+D A  +F  +  R + SW+++I G A HG    AL+ F
Sbjct: 521 GLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLF 580

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            +++ +    PN IT V VLSACNH G+V+E R +F +M   + ITP  EHY C+VD+L 
Sbjct: 581 YQML-KNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILG 639

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R G +DEA+ LV  MP +  A +W +LL A  + H ++ L    A+ ++  E    SG +
Sbjct: 640 RVGRLDEAMVLVKEMPFQASAAVWGALLGAA-RIHKNIELGRHAAEMLLTLEPEK-SGTH 697

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +LL+ +YAS   W++V  VR+ M +  V KEPG S IE+    + F  GD SHP++K+IY
Sbjct: 698 ILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIY 757

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             LD + E+L S GY P   +  + D     K+  L  HSE+LA+A G++   PG PIRV
Sbjct: 758 VKLDDLRERLTSAGYVP-MIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRV 816

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCH   K IS++ + EIIVRD  RFHHF+DGSCSC DYW
Sbjct: 817 KKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 166/363 (45%), Gaps = 49/363 (13%)

Query: 97  NSFTWNTLIRACA--RSVDAKPQA--IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           N FT++++++ C+  R+++   Q   + L   MI  G + P++ +    L ACA L   +
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTG-ISPNEFSLSTVLNACAGLEDEN 205

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G + H ++ K G  SD +  N+L+  YA  G  + A  VF  + +  +VSWN +I   V
Sbjct: 206 YGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCV 265

Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
              + D ALKL  +M      P  +T  S   ACA +  + LG   H+ +++     +  
Sbjct: 266 LHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK---MDMEP 322

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           D  V   LIDMY KCG L  AR VF+ MP +D+  WNSII G++  G    A+  F  + 
Sbjct: 323 DSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNM- 381

Query: 332 VEESFSPNSITFVGVLSA---------CNHRGMVSEGRDYFDVMINEYNITPVLEHYG-- 380
            +E    N  T   +L +         C     +S    Y     + Y    +L+ YG  
Sbjct: 382 YKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGY---QYDGYVANSLLDSYGKC 438

Query: 381 CLV-------------DLLARAGNI---------DEALHLVSNMP---MKPDAVIWRSLL 415
           CL+             DL+A    I         +EAL +   M    +KPDA I+ SL 
Sbjct: 439 CLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLF 498

Query: 416 DAC 418
           +AC
Sbjct: 499 NAC 501



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 145/311 (46%), Gaps = 8/311 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VFY+I  P+  +WN +I  C    +    A+ L  +M     V P   T   ALKAC
Sbjct: 242 AIAVFYEIPKPDIVSWNAVIAGCVLH-EKNDLALKLLGKMGSY-RVAPSMFTLSSALKAC 299

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A +     G+Q H+ + K  +  D ++   LI  Y+ CG L  A  VFD M  + ++ WN
Sbjct: 300 AAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWN 359

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  +   G    A+ LF  M +   E +  T  +I  + AG          H   ++ 
Sbjct: 360 SIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIK- 418

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                  D  V NSL+D Y KC  L+ A +VFE  P  DL ++ S+I  ++ +G  E AL
Sbjct: 419 --SGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEAL 476

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           K + R+  +    P++  F  + +AC +     +G+    V + +  +   +     LV+
Sbjct: 477 KMYLRM-QDRDIKPDAFIFSSLFNACANLSAYEQGKQ-IHVHVLKCGLLSDVFAGNSLVN 534

Query: 385 LLARAGNIDEA 395
           + A+ G+ID+A
Sbjct: 535 MYAKCGSIDDA 545



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SSL ++     +  Q KQIH   L+  L          S +  +A    +D A  +F +I
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSD--VFAGNSLVNMYAKCGSIDDASCIFNEI 552

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
                 +W+ +I   A+    + +A+ LF +M++ G +LP+  T    L AC +    ++
Sbjct: 553 SWRGIVSWSAMIGGLAQHGHGR-KALQLFYQMLKNG-ILPNHITLVSVLSACNHAGLVTE 610

Query: 154 GKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDAF 211
            ++    + K  G+         ++      G LD A  +   M  + S   W  ++ A 
Sbjct: 611 ARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGA- 669

Query: 212 VQFGEFDSALKLFR---RMQILFEPDGYTFQSITSACAGLATLSLGMWAH-AYILRHCDH 267
                    ++L R    M +  EP+    +S T         S GMW + A + R   +
Sbjct: 670 ---ARIHKNIELGRHAAEMLLTLEPE----KSGTHILLANIYASTGMWDNVAKVRRSMKN 722

Query: 268 SLV 270
           SLV
Sbjct: 723 SLV 725


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 336/628 (53%), Gaps = 64/628 (10%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFA 81
            +G   + ++  SSLT C  +S L   KQ+H Q +R  LP  H    + S ++  +A   
Sbjct: 284 GKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRN-LP--HIDPYVASAMVELYAKCG 340

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
               A RVF  + + NS +W  LI    +      +++ LF +M  +   + D+      
Sbjct: 341 CFKEAKRVFSSLRDRNSVSWTVLIGGFLQ-YGCFSESVELFNQMRAELMAV-DQFALATL 398

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           +  C        G Q H+   K G    V ++NSLI  YA CG+L  A  +F+ M ER +
Sbjct: 399 ISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDI 458

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQ-----------------------------ILFE 232
           VSW  MI A+ Q G    A + F  M                              +L E
Sbjct: 459 VSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTE 518

Query: 233 ----PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               PD  T+ ++   CA +    LG     + ++     L+ D  V N++I MY KCG 
Sbjct: 519 KDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKV---GLILDTSVVNAVITMYSKCGR 575

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +  AR+ F+ + ++DL SWN++I G++ HG  + A++ FD  ++ +   P+ I++V VLS
Sbjct: 576 ISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDD-ILNKGAKPDYISYVAVLS 634

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
            C+H G+V EG+ YFD+M  ++NI+P LEH+ C+VDLL RAG++ EA +L+  MPMKP A
Sbjct: 635 GCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTA 694

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWNDVGLV 466
            +W +LL A CK H +  L+E  AK +  ++S G   SG Y+LL+++YA A + +D   V
Sbjct: 695 EVWGALLSA-CKTHGNNDLAELAAKHLFDLDSPG---SGGYMLLAKMYADAGKSDDSAQV 750

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           RKLM DKG+ K PG S +E++   H F A D SHPQ   I   LD + EK+   GY    
Sbjct: 751 RKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTE 810

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           S  + +             HSE+LA+A GI++L   MPI + KNLR+C DCH V KLIS 
Sbjct: 811 SPRSEIH------------HSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLIST 858

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + + E ++RD  RFHHFK GSCSCMDYW
Sbjct: 859 VTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 11/304 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S ++ +A    +D+A  +F  +   +  +WN +I A ++S   + +A+ +   M  +G V
Sbjct: 230 SMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVR-EALDMVVDMHGKG-V 287

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD  T+  +L ACA L +   GKQ H  + +     D Y+ ++++  YA CG    A +
Sbjct: 288 RPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKR 347

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           VF ++ +R+ VSW V+I  F+Q+G F  +++LF +M+  L   D +   ++ S C     
Sbjct: 348 VFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMD 407

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           + LG   H+  L+   H+    V+V+NSLI MY KCG+L  A  +F  M +RD+ SW  +
Sbjct: 408 ICLGSQLHSLCLKS-GHTRA--VVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGM 464

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I  ++  G    A ++FD +        N IT+  +L A    G   +G   +  M+ E 
Sbjct: 465 ITAYSQVGNIAKAREFFDDMSTR-----NVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 371 NITP 374
           ++ P
Sbjct: 520 DVIP 523



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 161/373 (43%), Gaps = 39/373 (10%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L  A  +F ++   +  +WNT++    +S      A+ +F  M + G+ LP+  
Sbjct: 102 YAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQS-GQFLNALDIFVSMRQTGDSLPNAF 160

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK----- 191
           TF   +K+C  L       Q    + K     D  +  +L+     CG +D A+K     
Sbjct: 161 TFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRI 220

Query: 192 --------------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
                                     +F +M ER +VSWN++I A  + G    AL +  
Sbjct: 221 KNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVV 280

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            M      PD  T+ S  +ACA L++L  G   H  ++R+  H    D  V ++++++Y 
Sbjct: 281 DMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPH---IDPYVASAMVELYA 337

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG    A++VF S+  R+  SW  +I GF  +G    +++ F+++   E  + +     
Sbjct: 338 KCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRA-ELMAVDQFALA 396

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            ++S C +   +  G     + +   +   V+     L+ + A+ GN+  A  L+ N   
Sbjct: 397 TLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVS-NSLISMYAKCGNLQNA-ELIFNFMA 454

Query: 405 KPDAVIWRSLLDA 417
           + D V W  ++ A
Sbjct: 455 ERDIVSWTGMITA 467



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 79/344 (22%)

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN---------- 190
           AL++C    A +  +  H+ +   GL S V++ N+L+H Y SCG L  A           
Sbjct: 31  ALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEP 90

Query: 191 ----------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                                 ++F  M  R + SWN ++  + Q G+F +AL +F  M+
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 229 ILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
              +  P+ +TF  +  +C  L    + +     + +        D  V  +L+DM  +C
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQD---DPDVQTALVDMLVRC 207

Query: 287 GSLDIAR-------------------------------QVFESMPKRDLTSWNSIILGFA 315
           G++D A                                ++F+SMP+RD+ SWN +I   +
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 316 LHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYN 371
             GR   AL     +VV+   +   P+S T+   L+AC     +  G+  +  V+ N  +
Sbjct: 268 KSGRVREALD----MVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPH 323

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           I P +     +V+L A+ G   EA  + S++  + ++V W  L+
Sbjct: 324 IDPYVA--SAMVELYAKCGCFKEAKRVFSSLRDR-NSVSWTVLI 364



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 2/152 (1%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +V+ +N +++ Y K GSL  A ++F  MP RD+ SWN+I+ G+   G+   AL  F  + 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                 PN+ TF  V+ +C   G           ++++++     +    LVD+L R G 
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG-LLSKFDSQDDPDVQTALVDMLVRCGA 209

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           +D A    S +   P  +   S+L    K H 
Sbjct: 210 MDFASKQFSRIK-NPTIICRNSMLVGYAKSHG 240


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 328/585 (56%), Gaps = 47/585 (8%)

Query: 66  KTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR 124
           K ++ ++ +I   A    LD A R+  +    N  TW  LI   +R+  A  +A+  F  
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAA-EAVDCFNS 227

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF-KRGLVSDVYINNSLIHFYASC 183
           M+  G + PD+ T    L AC  L   + G   H  +  KR L+SD  +  +LI  YA C
Sbjct: 228 MLSDG-IAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV-ALIDMYAKC 285

Query: 184 GHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-------------- 228
           G    A +VFD +   R    WN MID + + G  D A  LF +M+              
Sbjct: 286 GDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGY 345

Query: 229 ----------ILFE--------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
                     +LF          D +T   + +A A L  L  G   HA I    +  LV
Sbjct: 346 IHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACI----EQRLV 401

Query: 271 T-DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DV +  +L+DMY KCG ++ A   F+ M  RD+ +W+++I G A +G  +AAL++F  
Sbjct: 402 ERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFW 461

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +  +  F  NS+T++ VL+AC+H  ++ EGR YFD M   +NI P +EHYGC++DLL R+
Sbjct: 462 MKCD-GFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRS 520

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G +DEA+ LV  MPM+P+AVIW S+L AC + H +V L++  A  +++ E      VYV 
Sbjct: 521 GLLDEAMDLVQTMPMQPNAVIWASILSAC-RVHKNVDLAQNAAHHLLKLEPAE-DAVYVQ 578

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           +  +Y  +R+W D   +R+LM  +GV K  G SSI + G  H+F  GD SHPQ  +I   
Sbjct: 579 MYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVM 638

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           ++ I  +LKS GY+P  SQ   VD  ++ K+ +L  HSE+LAIA G+++L P +P+ + K
Sbjct: 639 MEEIGRRLKSAGYSPITSQIT-VDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIK 697

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC+DCH   KLISR++N EIIVRDR+RFHHF+ G CSC D+W
Sbjct: 698 NLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 166/398 (41%), Gaps = 72/398 (18%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L YA  +F ++   ++F ++T +RAC R+     + I+L++RM    +V PD  TF F  
Sbjct: 53  LRYALSLFDRMPC-STFLFDTALRACFRASSGPDRPIILYRRM-HGVDVPPDAFTFHFLF 110

Query: 143 KACAYLFAFSQ-GKQAHAHIFKRGLVSDV-YINNSLIHFYASCGHLDLANKVFDNMLERS 200
           K CA   A    G+  HA  F+  L S V  I + +IH YA  G    A + FD    + 
Sbjct: 111 KCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKD 170

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL------------------------------ 230
           +V+W  +I    + G  D A +L  R  +                               
Sbjct: 171 VVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLS 230

Query: 231 --FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN------------ 276
               PD  T   + SAC  L  L+ G   H  +L      L++D LV             
Sbjct: 231 DGIAPDEVTVIGMLSACGQLKDLNFGCSLH--MLVGDKRMLMSDKLVVALIDMYAKCGDT 288

Query: 277 -------------------NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
                              N++ID YCK G +DIAR +F+ M   D+ ++NS+I G+   
Sbjct: 289 GRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHG 348

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           GR   AL  F ++        ++ T VG+L+A    G + +GR      I +  +   + 
Sbjct: 349 GRLREALLLFTKM-RRHGLGADNFTMVGLLTASASLGALPQGR-ALHACIEQRLVERDVY 406

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               L+D+  + G ++EA+     M ++ D   W +++
Sbjct: 407 LGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMI 443



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 139/311 (44%), Gaps = 17/311 (5%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI-YSRIIH 76
           H +  + R   S     +L+    +C    + +++     R   PQ    ++  Y ++ H
Sbjct: 260 HMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGH 319

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
                 +D A  +F Q+E+ +  T+N+LI         + +A++LF +M   G +  D  
Sbjct: 320 ------VDIARSLFDQMEDHDVITFNSLITGYIHGGRLR-EALLLFTKMRRHG-LGADNF 371

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L A A L A  QG+  HA I +R +  DVY+  +L+  Y  CG ++ A   F  M
Sbjct: 372 TMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQM 431

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG- 254
             R + +W+ MI      G   +AL+ F  M+   F  +  T+ ++ +AC+    L  G 
Sbjct: 432 SVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGR 491

Query: 255 -MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIIL 312
             +    +L    H++   +     +ID+  + G LD A  + ++MP + +   W SI+ 
Sbjct: 492 LYFDEMRLL----HNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILS 547

Query: 313 GFALHGRAEAA 323
              +H   + A
Sbjct: 548 ACRVHKNVDLA 558



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 33/267 (12%)

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITS 243
           HL  A  +FD M   + +    +   F      D  + L+RRM  +   PD +TF  +  
Sbjct: 52  HLRYALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFK 111

Query: 244 ACA-GLATLSLGMWAHAYILRHC-----------------------------DHSLVTDV 273
            CA G A + LG   HA   R                               D + V DV
Sbjct: 112 CCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDV 171

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           +   ++I    K G LD AR++    P R++ +W  +I G++  GRA  A+  F+ + + 
Sbjct: 172 VAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM-LS 230

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           +  +P+ +T +G+LSAC     ++ G     +++ +  +    +    L+D+ A+ G+  
Sbjct: 231 DGIAPDEVTVIGMLSACGQLKDLNFGCS-LHMLVGDKRMLMSDKLVVALIDMYAKCGDTG 289

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCK 420
            A  +   +        W +++D  CK
Sbjct: 290 RAREVFDALGRGRGPQPWNAMIDGYCK 316


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/594 (37%), Positives = 330/594 (55%), Gaps = 19/594 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIH 76
           + N  + EG   +  ++ S L  C     +     IH   L+  L      + + + +I+
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD---VFVSNALIN 265

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            ++ F  L  A  VF Q+E  +  +WN++I A  ++ D  P   + F + ++ G + PD 
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND--PSTALRFFKGMQLGGIRPDL 323

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFD 194
            T        + L      +     + +R  L  DV I N+L++ YA  G+++ A+ VFD
Sbjct: 324 LTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFD 383

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLS 252
            +  +  +SWN ++  + Q G    A+  +  M+   +  P+  T+ SI  A + +  L 
Sbjct: 384 QLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQ 443

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            GM  HA ++++   SL  DV V   LID+Y KCG L+ A  +F  +P+     WN+II 
Sbjct: 444 QGMKIHAKLIKN---SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIA 500

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
              +HGR E AL+ F  ++ E     + ITFV +LSAC+H G+V EG+  FD+M  EY I
Sbjct: 501 SLGIHGRGEEALQLFKDMLAER-VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P L+HYGC+VDLL RAG +++A  LV NMP++PDA IW +LL A CK + +  L    +
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSA-CKIYGNAELGTLAS 618

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            +++E +     G YVLLS +YA+  +W  V  VR L  D+G+ K PG SS+ +   A  
Sbjct: 619 DRLLEVDSENV-GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEV 677

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F+ G+ +HP+  +IY  L ++  K+KS GY PDYS     D  +D K+  L  HSERLAI
Sbjct: 678 FYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQ-DIEEDEKEQILNSHSERLAI 736

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           A GI++  P  PIR+FKNLRVC DCH  TK ISRI   EI+VRD  RFHHFKDG
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 15/377 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTW 101
           C +++  K++HA  L     Q    +++ +++I+ + +  D+  +   F  I   N F+W
Sbjct: 32  CVNVNATKKLHALLLVFGKSQN---IVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSW 88

Query: 102 NTLIRACAR--SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           N++I A  R          +     M   G++ PD +TFP  LKAC  L     GK+ H 
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKKVHC 145

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            +FK G   DV++  SL+H Y+  G LD+A+KVF +M  + + SWN MI  F Q G    
Sbjct: 146 CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAG 205

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL +  RM+    + D  T  SI   CA    +  G+  H ++L+   H L +DV V+N+
Sbjct: 206 ALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK---HGLDSDVFVSNA 262

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           LI+MY K G L  A+ VF+ M  RDL SWNSII  +  +     AL++F  + +     P
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL-GGIRP 321

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + +T V + S  +        R     +I    +   +     LV++ A+ G ++ A  +
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 399 VSNMPMKPDAVIWRSLL 415
              +P K D + W +L+
Sbjct: 382 FDQLPRK-DTISWNTLV 397


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 316/555 (56%), Gaps = 30/555 (5%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    +L+   R F +I + N  TW T+I ACA   +     + LF  M+ +G V+P++ 
Sbjct: 224 YTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDML-KGEVMPNEF 282

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    +  C      + GKQ     FK G  +++ + NS ++ Y   G  + A ++F+ M
Sbjct: 283 TLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEM 342

Query: 197 LERSLVSWNVMIDAFVQFGEFDSA-------------LKLFRRM-QILFEPDGYTFQSIT 242
            + S+++WN MI  F Q    DSA             LK+FR + +   +PD +TF SI 
Sbjct: 343 EDNSVITWNAMISGFAQI--MDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSIL 400

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           S C+ +  L  G   HA  ++      ++DV+VN++L++MY KCG ++ A + F  MP R
Sbjct: 401 SVCSTMMALEQGEQIHAQTIKT---GFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTR 457

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            L +W S+I G++ HGR   A++ F+ +++  +  PN ITFV +LSAC++ G+V E   Y
Sbjct: 458 TLVTWTSMISGYSQHGRPHDAIQLFEDMILAGA-KPNEITFVSLLSACSYAGLVEEAMRY 516

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           FD+M NEY+I P+++HYGC++D+  R G +D+A   +     +P+  IW SL+ A C+ H
Sbjct: 517 FDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLV-AGCRSH 575

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT--DKGVTKEPG 480
            ++ L+   A +++E +  +    YVLL  +Y S  RW DV  VRKL    D G+ ++  
Sbjct: 576 GNMELAFYAADRLLELKPKVVE-TYVLLLNMYISTGRWRDVARVRKLSKHEDLGILRDR- 633

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S I I    + F A D SHPQ+ ++Y  L+ + EK K+ GY P Y    + D  +DGK 
Sbjct: 634 -SWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEP-YQNTELYDSEEDGKP 691

Query: 541 S--SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           +  SL+ HSERLA+ALG+L   PG+ +R+ KN+ +C+DCH   K  S + N EI+VRD  
Sbjct: 692 AAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSIKFFSLLANREIVVRDSK 751

Query: 599 RFHHFKDGSCSCMDY 613
           R H FKDG CSC D+
Sbjct: 752 RLHKFKDGRCSCGDF 766



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N  + A  R +DA+ +A+     M+++G  +      P  L  C    +    K  H H+
Sbjct: 51  NGRLEAPPRPLDAQ-EAMA----MLKEGQSVQSAMYVPL-LHRCIETGSLGGAKALHGHM 104

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K G + D+++  SL++ Y  CG+   A  +FD M E+++V+W  +I  +    +   AL
Sbjct: 105 VKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLAL 164

Query: 222 KLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           ++F  M  L   P  YT   + SAC     + LG   H Y +++   S+ +   + NSL 
Sbjct: 165 EVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITS---IGNSLC 221

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL-HGRAEAALKYFDRLVVEESFSPN 339
            +Y K G+L+   + F+ +P +++ +W ++I   A      E  L  F  ++  E   PN
Sbjct: 222 RLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVM-PN 280

Query: 340 SITFVGVLSACNHRGMVSEGRDY--FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
             T   V+S C     ++ G+    F   I      PV       + L  R G  +EA+ 
Sbjct: 281 EFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPV---KNSTMYLYLRKGETEEAMR 337

Query: 398 LVSNMPMKPDAVIWRSLLDA 417
           L   M      + W +++  
Sbjct: 338 LFEEME-DNSVITWNAMISG 356


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/588 (36%), Positives = 330/588 (56%), Gaps = 23/588 (3%)

Query: 37   LSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
            +S L+ C  +  L   +Q+H  A++  L     T +  + +  +     +   + +F  +
Sbjct: 488  ISGLSSCAGLGLLAAGQQLHCDAVKWGLYLD--TSVSNALVKMYGECGRMSECWEIFNSM 545

Query: 94   ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
               +  +WN+++   A S     +++ +F  M++ G ++P+K TF   L A   L     
Sbjct: 546  SAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSG-LVPNKVTFVNFLAALTPLSVLEL 604

Query: 154  GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVMIDAFV 212
            GKQ H+ + K G+  D  ++N+L+  YA  G +D   ++F  M   R  +SWN MI  ++
Sbjct: 605  GKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYI 664

Query: 213  QFGEFDSALK----LFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
              G    A+     +    Q++   D  TF  + +ACA +A L  GM  HA+ LR     
Sbjct: 665  YNGHLQEAMDCVCLMMHSEQMM---DHCTFSIVLNACASVAALERGMEMHAFGLRS---H 718

Query: 269  LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            L +DV+V ++L+DMY KCG +D A +VF SM +++  SWNS+I G+A HG    AL+ F+
Sbjct: 719  LESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFE 778

Query: 329  RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
             +  E   SP+ +TFV VLSAC+H G+V  G DYF++M  +Y I P +EHY C++DLL R
Sbjct: 779  EMQ-ESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGR 836

Query: 389  AGNIDEALHLVSNMPMKPDAVIWRSLLDAC--CKKHASVVLSEEVAKQVIESEGGICSGV 446
            AG +D+    +  MPMKP+ +IWR++L AC   K  A + L  E ++ ++E E       
Sbjct: 837  AGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVN- 895

Query: 447  YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            YVL S+ +A+  RW D    R  M    V KE G S + +    H F AGD SHP TK+I
Sbjct: 896  YVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEI 955

Query: 507  YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
            Y  L+ + +K+++ GY P  ++  + D  ++ K+  LR HSE+LA+A  +     G PIR
Sbjct: 956  YEKLNFLIQKIRNAGYVP-LTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIR 1014

Query: 567  VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + KNLRVC DCH   + IS+I   +II+RD  RFHHFKDG CSC DYW
Sbjct: 1015 IMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 193/408 (47%), Gaps = 20/408 (4%)

Query: 20  IFNNNRNEGSFN--NHSSLLSSLTECKSMSQL----KQIHAQALRTALPQQHKTLLIYSR 73
           IF   R+  + N   +  LLS++ E  +  Q     +++HA  LR      ++ + + + 
Sbjct: 366 IFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAG--HIYRKIAVSNG 423

Query: 74  IIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           +++ +A    +D A RVF  +E  +  +WNT+I A  +  +   +A ++   ++ Q ++ 
Sbjct: 424 LVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQ--NGYCEAAMMNYCLMRQNSIG 481

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P        L +CA L   + G+Q H    K GL  D  ++N+L+  Y  CG +    ++
Sbjct: 482 PSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEI 541

Query: 193 FDNMLERSLVSWNVMIDAFVQF-GEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           F++M    +VSWN ++            ++++F   M+    P+  TF +  +A   L+ 
Sbjct: 542 FNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSV 601

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNS 309
           L LG   H+ +L+   H +  D  V+N+L+  Y K G +D   ++F  M  +RD  SWNS
Sbjct: 602 LELGKQIHSVMLK---HGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNS 658

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+  +G  + A+     ++  E    +  TF  VL+AC     +  G +     +  
Sbjct: 659 MISGYIYNGHLQEAMDCVCLMMHSEQMM-DHCTFSIVLNACASVAALERGMEMHAFGLRS 717

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +  + V+     LVD+ ++ G ID A  +  +M  K +   W S++  
Sbjct: 718 HLESDVVVE-SALVDMYSKCGRIDYASKVFHSMSQK-NEFSWNSMISG 763



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 20/364 (5%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL---PDKHTFPFAL 142
           A RVF      +  TWN L+   A+  DA      LF+ M    + +   P +HTF  +L
Sbjct: 226 AQRVFDTTPVRDLITWNALMSVYAKRGDAIC-TFTLFRAMQYDDSGIELRPTEHTFG-SL 283

Query: 143 KACAYLFAFSQG--KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
               YL + S G   Q    + K G  SD+Y+ ++L+  +A  G LD A  ++  + ER+
Sbjct: 284 ITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERN 343

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT----LSLGMW 256
            V+ N +I   V+    ++A ++F   +     +  T+  + SA A  +T    L  G  
Sbjct: 344 AVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGRE 403

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            HA++LR   H +   + V+N L++MY KCG++D A +VF+ M  RD  SWN+II     
Sbjct: 404 VHAHVLR-AGH-IYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQ 461

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF--DVMINEYNITP 374
           +G  EAA+  +  L+ + S  P++   +  LS+C   G+++ G+      V    Y  T 
Sbjct: 462 NGYCEAAMMNYC-LMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTS 520

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
           V      LV +    G + E   + ++M    D V W S++       A +  S +V   
Sbjct: 521 V---SNALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIMGVMASSQAPITESVQVFSN 576

Query: 435 VIES 438
           +++S
Sbjct: 577 MMKS 580



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 175/383 (45%), Gaps = 24/383 (6%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           + +H + ++  L   H   L    +  +A  A LD A RVF  +   N+ +W  LI    
Sbjct: 85  ESLHLEVVKRGL--THDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLIS--G 140

Query: 110 RSVDAKPQ-AIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAFSQG--KQAHAHIFKRG 165
             +   P+ A  LF+ M+ +G    P   TF   L+AC        G   Q H  + K  
Sbjct: 141 HVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTE 200

Query: 166 LVSDVYINNSLIHFYASC--GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
             S+  + N+LI  Y SC  G   LA +VFD    R L++WN ++  + + G+      L
Sbjct: 201 FTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTL 260

Query: 224 FRRMQ-----ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           FR MQ     I   P  +TF S+ +A   L++ SLG+    ++ R       +D+ V ++
Sbjct: 261 FRAMQYDDSGIELRPTEHTFGSLITATY-LSSCSLGLLDQLFV-RVLKSGCSSDLYVGSA 318

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+  + + G LD A+ ++  + +R+  + N +I G       EAA + F  +   +S + 
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF--MGARDSAAV 376

Query: 339 NSITFVGVLSACNHRGMVSE----GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           N  T+V +LSA        +    GR+    ++   +I   +     LV++ A+ G ID+
Sbjct: 377 NVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDK 436

Query: 395 ALHLVSNMPMKPDAVIWRSLLDA 417
           A  +   M  + D + W +++ A
Sbjct: 437 ACRVFQLMEAR-DRISWNTIITA 458


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/451 (44%), Positives = 287/451 (63%), Gaps = 15/451 (3%)

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           V  V+++N+   F    G  D A  +F  M  R +VSWN M+  + Q G+ + AL LF +
Sbjct: 149 VLKVWMHNNKNTF----GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 204

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M+ +  +P   T  S+ SACA L  L  G+  H YI    D+ +  + +V  +L+DMY K
Sbjct: 205 MRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI---NDNRIEVNSIVGTALVDMYAK 261

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG + +A QVF +M  +D+ +WN+II G A+HG  + A + F  +  E    PN ITFV 
Sbjct: 262 CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMK-EAGVEPNDITFVA 320

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           +LSAC+H GMV EG+   D M + Y I P +EHYGC++DLLARAG ++EA+ L+  MPM+
Sbjct: 321 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPME 380

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-SGVYVLLSRVYASARRWNDVG 464
           P+     +LL  C + H +  L E V K++I  +   C SG Y+LLS +YA+A++W+D  
Sbjct: 381 PNPCALGALLGGC-RIHGNFELGEMVGKRLINLQP--CHSGRYILLSNIYAAAKKWDDAR 437

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR-GYT 523
            VR LM   G++K PG S IE+ G+ H F AGD SHP++ +IY  L+ I  +LKS  G++
Sbjct: 438 KVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHS 497

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
            D     ++D  ++ K+ +L +HSE+LAIA G+L+L     IR+ KNLRVC+DCH VTKL
Sbjct: 498 ADTGDV-LLDMEEEDKEHALPVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKL 556

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS+++  EIIVRDR RFHHF+DG CSC+D+W
Sbjct: 557 ISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 12/258 (4%)

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           +F   D AF +F ++   +  +WN+++ AC        +A+ LF +M   G V P + T 
Sbjct: 160 TFGKRDDAFGLFSEMPCRDVVSWNSML-ACYAQCGKPNEALALFDQMRAVG-VKPTEATV 217

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              L ACA+L A  +G   H +I    +  +  +  +L+  YA CG + LA +VF+ M  
Sbjct: 218 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 277

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWA 257
           + +++WN +I      G    A +LF+ M +   EP+  TF ++ SAC+       GM  
Sbjct: 278 KDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACS-----HAGMVD 332

Query: 258 HAYILRHC---DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILG 313
               L  C    + +   V     +ID+  + G L+ A ++  +MP + +  +  +++ G
Sbjct: 333 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGG 392

Query: 314 FALHGRAEAALKYFDRLV 331
             +HG  E       RL+
Sbjct: 393 CRIHGNFELGEMVGKRLI 410



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL-KQIHAQALRT 59
           M     Q G P     + ++F+  R  G     ++++S L+ C  +  L K +H      
Sbjct: 185 MLACYAQCGKPN---EALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 241

Query: 60  ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
               +  +++  + +  +A    +  A +VF  +E+ +   WNT+I   A     K +A 
Sbjct: 242 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVK-EAQ 300

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
            LF+ M E G V P+  TF   L AC++     +G++
Sbjct: 301 RLFKEMKEAG-VEPNDITFVAMLSACSHAGMVDEGQK 336


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 336/627 (53%), Gaps = 60/627 (9%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           +++G   + ++  SSLT C  +S L   KQ+HAQ +R  LP  H    + S ++  +A  
Sbjct: 262 QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LP--HIDPYVASALVELYAKS 318

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
                A  VF  + + N+  W  LI    +      +++ LF +M  +   L D+     
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQ-YGCFTESVELFNQMRAELMTL-DQFALAT 376

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC----------------- 183
            +  C        G+Q H+   K G +  V ++NSLI  YA C                 
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKD 436

Query: 184 --------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-- 227
                         G++  A + FD M E+++++WN M+ A++Q G  +  L++++ M  
Sbjct: 437 IVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLS 496

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +    PD  T+ ++   CA L    LG      I R     L+ D  V N++I MY KCG
Sbjct: 497 EEYVRPDWVTYVTLFKGCADLGANKLG---DQIIGRTVKVGLIIDTSVANAVITMYSKCG 553

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            +  AR+VF+ +  +D+ SWN++I G++ HG  + A++ FD  +++    P+ I++V VL
Sbjct: 554 RILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDD-ILKRGAKPDYISYVAVL 612

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           S C+H G+V EG+ YFD+M   +NI+P LEH+ C+VDLL RAG++ EA  L+ +MPMKP 
Sbjct: 613 SGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPT 672

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           A +W +LL A CK H +  L+E  AK V E +    SG Y+L++++YA A + +D   +R
Sbjct: 673 AEVWGALLSA-CKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIR 730

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           KLM DKG+ K PG S +E+D   H F A D SHPQ   I   LD + EK+   GY     
Sbjct: 731 KLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVR--- 787

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
                    D  +S +  HSE+LA+A G++ L   MPI + KNLR+C DCH V KLIS +
Sbjct: 788 --------TDSTRSEIH-HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTV 838

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
              E ++RD  RFHHF  GSCSC DYW
Sbjct: 839 TGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 11/293 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D+A  +F  +   +  +WN ++ A ++S   + +A+ +   M  +G V  D  T+  +L
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVR-EALDMVVDMQSKG-VRLDSTTYTSSL 277

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            ACA L +   GKQ HA + +     D Y+ ++L+  YA  G    A  VF+++ +R+ V
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNV 337

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +W V+I  F+Q+G F  +++LF +M+  L   D +   ++ S C     L LG   H+  
Sbjct: 338 AWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLC 397

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+      +  V+V+NSLI MY KC +L  A  +F  M ++D+ SW S+I  ++  G   
Sbjct: 398 LK---SGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVA 454

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            A ++FD +        N IT+  +L A    G   +G   + VM++E  + P
Sbjct: 455 KAREFFDGMS-----EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 502



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 184/421 (43%), Gaps = 52/421 (12%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
            ++LL +   C ++S  +++        +   H  ++ ++ +++ +A    L  A  +F 
Sbjct: 42  QNTLLHAYLSCGALSDARRL------LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFG 95

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIV---LFQRMIEQGNVLPDKHTFPFALKACAYL 148
           ++   +  +WNTL+    +S     Q +V    F  M   G+  P+  T   A+K+C  L
Sbjct: 96  RMPARDVASWNTLMSGYFQS----RQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGAL 151

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF--------------- 193
              S   Q  A + K     D  +  +L+  +  CG +DLA+++F               
Sbjct: 152 GWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSML 211

Query: 194 ----------------DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236
                           D+M ER +VSWN+M+ A  Q G    AL +   MQ      D  
Sbjct: 212 AGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDST 271

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T+ S  +ACA L++L  G   HA ++R+  H    D  V ++L+++Y K G    A+ VF
Sbjct: 272 TYTSSLTACARLSSLRWGKQLHAQVIRNLPH---IDPYVASALVELYAKSGCFKEAKGVF 328

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
            S+  R+  +W  +I GF  +G    +++ F+++   E  + +      ++S C  R  +
Sbjct: 329 NSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDL 387

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
             GR    + +    I  V+     L+ + A+  N+  A  +   M  K D V W S++ 
Sbjct: 388 CLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAEAIFRFMNEK-DIVSWTSMIT 445

Query: 417 A 417
           A
Sbjct: 446 A 446



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 78/329 (23%)

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK-VFD 194
             F  AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L  A + +  
Sbjct: 5   QAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLM 64

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------QILFE--- 232
           ++   ++++ NVM++ + + G    A++LF RM                   Q L     
Sbjct: 65  DIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLET 124

Query: 233 -----------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
                      P+ +T      +C  L   SL +   A + +        D  V  +L+D
Sbjct: 125 FLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQD---DSEVAAALVD 181

Query: 282 MYCKCGSLDIAR-------------------------------QVFESMPKRDLTSWNSI 310
           M+ +CG++D+A                                ++F+SMP+RD+ SWN +
Sbjct: 182 MFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 311 ILGFALHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVM 366
           +   +  GR   AL     +VV+   +    +S T+   L+AC     +  G+  +  V+
Sbjct: 242 VSALSQSGRVREALD----MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 297

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEA 395
            N  +I P +     LV+L A++G   EA
Sbjct: 298 RNLPHIDPYVA--SALVELYAKSGCFKEA 324


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/596 (36%), Positives = 332/596 (55%), Gaps = 24/596 (4%)

Query: 28   GSFNNHSSLLSSLTECKSMSQ----LKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
            G   +  ++ S L  C S+        QIHA A++  +     + +  + I  ++    +
Sbjct: 1002 GLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLD--SFVSTTLIDVYSKSGKM 1059

Query: 84   DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
            + A  +F   +  +  +WN ++     S D  P+A+ L+  M E G    ++ T   A K
Sbjct: 1060 EEAEFLFVNQDGFDLASWNAMMHGYIVSGDF-PKALRLYILMQESGE-RANQITLANAAK 1117

Query: 144  ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
            A   L    QGKQ  A + KRG   D+++ + ++  Y  CG ++ A ++F+ +     V+
Sbjct: 1118 AAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVA 1177

Query: 204  WNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
            W  MI   V+ G+ + AL  +  M++   +PD YTF ++  AC+ L  L  G   HA  +
Sbjct: 1178 WTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTV 1237

Query: 263  R-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            + +C      D  V  SL+DMY KCG+++ AR +F+      + SWN++I+G A HG AE
Sbjct: 1238 KLNC----AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAE 1293

Query: 322  AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             AL++F+ +      +P+ +TF+GVLSAC+H G+VSE  + F  M   Y I P +EHY C
Sbjct: 1294 EALQFFEEMK-SRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSC 1352

Query: 382  LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
            LVD L+RAG I EA  ++S+MP +  A ++R+LL+AC      V +  E  K+V E    
Sbjct: 1353 LVDALSRAGRIREAEKVISSMPFEASASMYRTLLNAC-----RVQVDRETGKRVAEKLLA 1407

Query: 442  IC---SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
            +    S  YVLLS VYA+A +W +V   R +M    V K+PG S +++    H F AGD 
Sbjct: 1408 LEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDR 1467

Query: 499  SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILN 558
            SH +T  IY  ++ I ++++  GY PD +  A+VD  ++ K+ SL  HSE+LAIA G++ 
Sbjct: 1468 SHEETDVIYNKVEYIMKRIREEGYLPD-TDFALVDVEEEDKECSLYYHSEKLAIAYGLMK 1526

Query: 559  LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              P   +RV KNLRVC DCH   K IS++F  E+++RD  RFHHF+ G CSC DYW
Sbjct: 1527 TPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 182/368 (49%), Gaps = 17/368 (4%)

Query: 36   LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
            +LS +     +   KQIH   +R+ L Q    + + + +I+ +     +  A  VF+Q+ 
Sbjct: 912  MLSVVAGLNCLELGKQIHGIVVRSGLDQ---VVSVGNCLINMYVKTGSVSRARTVFWQMN 968

Query: 95   NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ- 153
              +  +WNT+I  CA S   +  ++ +F  ++ +G +LPD+ T    L+AC+ L      
Sbjct: 969  EVDLVSWNTMISGCALS-GLEECSVGMFVDLL-RGGLLPDQFTVASVLRACSSLGGGCHL 1026

Query: 154  GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
              Q HA   K G+V D +++ +LI  Y+  G ++ A  +F N     L SWN M+  ++ 
Sbjct: 1027 ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIV 1086

Query: 214  FGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             G+F  AL+L+  MQ   E  +  T  +   A  GL  L  G    A +++        D
Sbjct: 1087 SGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVK---RGFNLD 1143

Query: 273  VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            + V + ++DMY KCG ++ AR++F  +P  D  +W ++I G   +G+ E AL  +  + +
Sbjct: 1144 LFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRL 1203

Query: 333  EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLARAG 390
             +   P+  TF  ++ AC+    + +GR    +  N   +    + +    LVD+ A+ G
Sbjct: 1204 SK-VQPDEYTFATLVKACSLLTALEQGR---QIHANTVKLNCAFDPFVMTSLVDMYAKCG 1259

Query: 391  NIDEALHL 398
            NI++A  L
Sbjct: 1260 NIEDARGL 1267



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 141/309 (45%), Gaps = 15/309 (4%)

Query: 117  QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
            +A+  F  MI    V  D  TF   L   A L     GKQ H  + + GL   V + N L
Sbjct: 889  EAVDCFVDMINS-RVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCL 947

Query: 177  IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF---RRMQILFEP 233
            I+ Y   G +  A  VF  M E  LVSWN MI      G  + ++ +F    R  +L  P
Sbjct: 948  INMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLL--P 1005

Query: 234  DGYTFQSITSACAGL-ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
            D +T  S+  AC+ L     L    HA  ++     +V D  V+ +LID+Y K G ++ A
Sbjct: 1006 DQFTVASVLRACSSLGGGCHLATQIHACAMK---AGVVLDSFVSTTLIDVYSKSGKMEEA 1062

Query: 293  RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
              +F +    DL SWN+++ G+ + G    AL+ +  L+ E     N IT      A   
Sbjct: 1063 EFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLY-ILMQESGERANQITLANAAKAAGG 1121

Query: 353  RGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
               + +G+    V++   +N+   L     ++D+  + G ++ A  + + +P  PD V W
Sbjct: 1122 LVGLKQGKQIQAVVVKRGFNLD--LFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAW 1178

Query: 412  RSLLDACCK 420
             +++  C +
Sbjct: 1179 TTMISGCVE 1187



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 201  LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
            +++WN  +  F+Q GE   A+  F  M       DG TF  + S  AGL  L LG   H 
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930

Query: 260  YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
             ++R     +V+   V N LI+MY K GS+  AR VF  M + DL SWN++I G AL G 
Sbjct: 931  IVVRSGLDQVVS---VGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGL 987

Query: 320  AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP--VLE 377
             E ++  F  L +     P+  T   VL AC+  G    G  +    I+   +    VL+
Sbjct: 988  EECSVGMFVDL-LRGGLLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLD 1042

Query: 378  HY--GCLVDLLARAGNIDEALHLVSN 401
             +    L+D+ +++G ++EA  L  N
Sbjct: 1043 SFVSTTLIDVYSKSGKMEEAEFLFVN 1068



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 9/193 (4%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAF 211
           GK+AHA I   G   D ++ N+LI  Y+ CG L  A K+FD   +  R LV+WN ++ A 
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 212 VQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
               +      LFR ++  F     +T   +   C   A+ S     H Y ++     L 
Sbjct: 705 AD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVK---IGLQ 759

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            DV V  +L+++Y K G +  AR +F+ M  RD+  WN ++  +   G    AL  F   
Sbjct: 760 WDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEF 819

Query: 331 VVEESFSPNSITF 343
                  P+ +T 
Sbjct: 820 -NRTGLRPDDVTL 831



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 149/373 (39%), Gaps = 38/373 (10%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS--FTWNTLIRA 107
           K+ HA+ L +         L  + I  ++    L  A ++F    + +    TWN ++ A
Sbjct: 646 KRAHARILTSG--HHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSA 703

Query: 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
            A   D       LF R++ +  V   +HT     K C    + S  +  H +  K GL 
Sbjct: 704 HA---DKARDGFHLF-RLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQ 759

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            DV++  +L++ YA  G +  A  +FD M  R +V WNVM+ A+V  G    AL LF   
Sbjct: 760 WDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEF 819

Query: 228 -QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
            +    PD  T          L TL+  + +   +L       +  +    + + MY   
Sbjct: 820 NRTGLRPDDVT----------LCTLARVVKSKQNVLEW----QLKQLKAYGTKLFMYDD- 864

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
                           D+ +WN  +  F   G    A+  F  + +    + + +TFV +
Sbjct: 865 -----------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDM-INSRVACDGLTFVVM 912

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LS       +  G+    +++    +  V+    CL+++  + G++  A  +   M  + 
Sbjct: 913 LSVVAGLNCLELGKQIHGIVVRS-GLDQVVSVGNCLINMYVKTGSVSRARTVFWQMN-EV 970

Query: 407 DAVIWRSLLDACC 419
           D V W +++  C 
Sbjct: 971 DLVSWNTMISGCA 983


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 316/563 (56%), Gaps = 11/563 (1%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           +H  ++RT L  +  T L  + +  +++ +D     ++F  +E  N  +W  +I +  R+
Sbjct: 107 VHGYSVRTGLISE--TSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRA 164

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
                 A  LFQ M  +G + PD      AL A A   +   GK  H +  + G+   + 
Sbjct: 165 GHFDKVA-GLFQEMGLEG-IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLP 222

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF 231
           + N+L+  Y  CG+++ A  +FD++ ++  +SWN +I  + +    + A  LF  M +  
Sbjct: 223 VANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQL 282

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            P+  T   I  A A L++L  G   HAY +R      + D  V N+L+DMY KCG+L +
Sbjct: 283 RPNAVTMACILPAAASLSSLERGREMHAYAVRR---GYLEDNFVANALVDMYVKCGALLL 339

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           AR++F+ +  ++L SW  +I G+ +HGR   A+  F+++       P++ +F  +L AC+
Sbjct: 340 ARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMK-GSGIQPDAGSFSAILYACS 398

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
           H G+  EG  +F+ M NE+ I P L+HY C+VDLL   GN+ EA   +  MP++PD+ IW
Sbjct: 399 HSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIW 458

Query: 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471
            SLL  C + H +V L+E+VA+ V E E    +G YVLL+ +YA A RW  V  ++  + 
Sbjct: 459 VSLLRGC-RIHRNVKLAEKVAEMVFELEPE-NTGYYVLLANIYAEAERWEAVRKLKNKVG 516

Query: 472 DKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM 531
            +G+ +  GCS IE+ G AH FFA + +HPQ  +I  FLD +  +++  G+ P    A M
Sbjct: 517 GRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALM 576

Query: 532 VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVE 591
             + D     +L  HS +LA+A G+LNL  G PIRV KN RVC  CHE  K IS++   E
Sbjct: 577 GAD-DAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGRE 635

Query: 592 IIVRDRARFHHFKDGSCSCMDYW 614
           II+RD  RFHHF++G CSC  YW
Sbjct: 636 IILRDSNRFHHFEEGRCSCRGYW 658



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 149/290 (51%), Gaps = 10/290 (3%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A    ++ A  VF ++   +  +WN++I  CA S     +A+ LF RM  +G  L 
Sbjct: 26  ISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA-SNGLYDKAVELFVRMWLEGQEL- 83

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  T    + AC        G   H +  + GL+S+  + N+L+  Y++C      NK+F
Sbjct: 84  DSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIF 143

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
            NM ++++VSW  MI ++ + G FD    LF+ M +    PD +   S   A AG  +L 
Sbjct: 144 RNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLK 203

Query: 253 LGMWAHAYILRHCDHSLVTDVL-VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            G   H Y +R+     + +VL V N+L++MY KCG ++ AR +F+ + K+D  SWN++I
Sbjct: 204 HGKSVHGYAIRNG----IEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLI 259

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
            G++    A  A   F+ ++++    PN++T   +L A      +  GR+
Sbjct: 260 GGYSRSNLANEAFTLFNEMLLQ--LRPNAVTMACILPAAASLSSLERGRE 307



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 7/263 (2%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G   H ++ K G  +   + N+LI FYA    ++ A  VFD M +R ++SWN +I     
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 214 FGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G +D A++LF RM +   E D  T  S+  AC       +G   H Y +R     L+++
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVR---TGLISE 119

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             + N+L+DMY  C       ++F +M ++++ SW ++I  +   G  +     F  + +
Sbjct: 120 TSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGL 179

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            E   P+       L A      +  G+      I    I  VL     L+++  + G +
Sbjct: 180 -EGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRN-GIEEVLPVANALMEMYVKCGYM 237

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
           +EA  +  ++  K D + W +L+
Sbjct: 238 EEARFIFDHVT-KKDTISWNTLI 259


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 336/627 (53%), Gaps = 60/627 (9%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           +++G   + ++  SSLT C  +S L   KQ+HAQ +R  LP  H    + S ++  +A  
Sbjct: 282 QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LP--HIDPYVASALVELYAKS 338

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
                A  VF  + + N+  W  LI    +      +++ LF +M  +   L D+     
Sbjct: 339 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQ-YGCFTESVELFNQMRAELMTL-DQFALAT 396

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC----------------- 183
            +  C        G+Q H+   K G +  V ++NSLI  YA C                 
Sbjct: 397 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKD 456

Query: 184 --------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-- 227
                         G++  A + FD M E+++++WN M+ A++Q G  +  L++++ M  
Sbjct: 457 IVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLS 516

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +    PD  T+ ++   CA L    LG      I R     L+ D  V N++I MY KCG
Sbjct: 517 EEYVRPDWVTYVTLFKGCADLGANKLG---DQIIGRTVKVGLIIDTSVANAVITMYSKCG 573

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            +  AR+VF+ +  +D+ SWN++I G++ HG  + A++ FD  +++    P+ I++V VL
Sbjct: 574 RILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDD-ILKRGAKPDYISYVAVL 632

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           S C+H G+V EG+ YFD+M   +NI+P LEH+ C+VDLL RAG++ EA  L+ +MPMKP 
Sbjct: 633 SGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPT 692

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           A +W +LL A CK H +  L+E  AK V E +    SG Y+L++++YA A + +D   +R
Sbjct: 693 AEVWGALLSA-CKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIR 750

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           KLM DKG+ K PG S +E+D   H F A D SHPQ   I   LD + EK+   GY     
Sbjct: 751 KLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVR--- 807

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
                    D  +S +  HSE+LA+A G++ L   MPI + KNLR+C DCH V KLIS +
Sbjct: 808 --------TDSTRSEIH-HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTV 858

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
              E ++RD  RFHHF  GSCSC DYW
Sbjct: 859 TGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 11/293 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D+A  +F  +   +  +WN ++ A ++S   + +A+ +   M  +G V  D  T+  +L
Sbjct: 240 VDHALELFDSMPERDVVSWNMMVSALSQSGRVR-EALDMVVDMQSKG-VRLDSTTYTSSL 297

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            ACA L +   GKQ HA + +     D Y+ ++L+  YA  G    A  VF+++ +R+ V
Sbjct: 298 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNV 357

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +W V+I  F+Q+G F  +++LF +M+  L   D +   ++ S C     L LG   H+  
Sbjct: 358 AWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLC 417

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+      +  V+V+NSLI MY KC +L  A  +F  M ++D+ SW S+I  ++  G   
Sbjct: 418 LK---SGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVA 474

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
            A ++FD +        N IT+  +L A    G   +G   + VM++E  + P
Sbjct: 475 KAREFFDGMS-----EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 522



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 184/421 (43%), Gaps = 52/421 (12%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
            ++LL +   C ++S  +++        +   H  ++ ++ +++ +A    L  A  +F 
Sbjct: 62  QNTLLHAYLSCGALSDARRL------LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFG 115

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIV---LFQRMIEQGNVLPDKHTFPFALKACAYL 148
           ++   +  +WNTL+    +S     Q +V    F  M   G+  P+  T   A+K+C  L
Sbjct: 116 RMPARDVASWNTLMSGYFQS----RQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGAL 171

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF--------------- 193
              S   Q  A + K     D  +  +L+  +  CG +DLA+++F               
Sbjct: 172 GWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSML 231

Query: 194 ----------------DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236
                           D+M ER +VSWN+M+ A  Q G    AL +   MQ      D  
Sbjct: 232 AGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDST 291

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T+ S  +ACA L++L  G   HA ++R+  H    D  V ++L+++Y K G    A+ VF
Sbjct: 292 TYTSSLTACARLSSLRWGKQLHAQVIRNLPH---IDPYVASALVELYAKSGCFKEAKGVF 348

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
            S+  R+  +W  +I GF  +G    +++ F+++   E  + +      ++S C  R  +
Sbjct: 349 NSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDL 407

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
             GR    + +    I  V+     L+ + A+  N+  A  +   M  K D V W S++ 
Sbjct: 408 CLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAEAIFRFMNEK-DIVSWTSMIT 465

Query: 417 A 417
           A
Sbjct: 466 A 466



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 78/329 (23%)

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK-VFD 194
             F  AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L  A + +  
Sbjct: 25  QAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLM 84

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------QILFE--- 232
           ++   ++++ NVM++ + + G    A++LF RM                   Q L     
Sbjct: 85  DIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLET 144

Query: 233 -----------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
                      P+ +T      +C  L   SL +   A + +        D  V  +L+D
Sbjct: 145 FLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQD---DSEVAAALVD 201

Query: 282 MYCKCGSLDIAR-------------------------------QVFESMPKRDLTSWNSI 310
           M+ +CG++D+A                                ++F+SMP+RD+ SWN +
Sbjct: 202 MFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM 261

Query: 311 ILGFALHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVM 366
           +   +  GR   AL     +VV+   +    +S T+   L+AC     +  G+  +  V+
Sbjct: 262 VSALSQSGRVREALD----MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 317

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEA 395
            N  +I P +     LV+L A++G   EA
Sbjct: 318 RNLPHIDPYVA--SALVELYAKSGCFKEA 344


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/541 (40%), Positives = 308/541 (56%), Gaps = 12/541 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++ F  L  A RVF  +E  +  +WN++I A  ++ D    A+  F+ M+  G + PD  
Sbjct: 293 YSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQN-DDPVTALGFFKEMLFVG-MRPDLL 350

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T          L     G+  H  + + R L  D+ I N+L++ YA  G +D A  VF+ 
Sbjct: 351 TVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQ 410

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--ILFEPDGYTFQSITSACAGLATLSL 253
           +  R ++SWN +I  + Q G    A+  +  M+      P+  T+ SI  A + +  L  
Sbjct: 411 LPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQ 470

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           GM  H  ++++C   L  DV V   LIDMY KCG L+ A  +F  +P+     WN+II  
Sbjct: 471 GMKIHGRLIKNC---LFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISS 527

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
             +HG  E AL+ F  +  +     + ITFV +LSAC+H G+V E +  FD M  EY I 
Sbjct: 528 LGIHGHGEKALQLFKDMRAD-GVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIK 586

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P L+HYGC+VDL  RAG +++A +LVSNMP++ DA IW +LL A C+ H +  L    + 
Sbjct: 587 PNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLL-AACRIHGNAELGTFASD 645

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           +++E +     G YVLLS +YA+  +W     VR L  D+G+ K PG SS+ +  +   F
Sbjct: 646 RLLEVDSENV-GYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVF 704

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
           +AG+ SHPQ  +IY  L +++ K+KS GY PDYS   + D  +D K+  L  HSERLAI 
Sbjct: 705 YAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYS-FVLQDVEEDEKEEILTSHSERLAIV 763

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            GI++  P  PIR+FKNLRVC DCH  TK IS+I   EIIVRD  RFHHFKDG CSC DY
Sbjct: 764 FGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDY 823

Query: 614 W 614
           W
Sbjct: 824 W 824



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L  C S++  +++H   L+     +H   +  S I  ++ F  ++ A +VF  +   +  
Sbjct: 157 LKACLSLADGEKMHCWVLKMGF--EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVG 214

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WN +I    ++ +   +A+ +  RM  +  V  D  T    L  CA       G   H 
Sbjct: 215 SWNAMISGFCQNGNV-AEALRVLDRMKTE-EVKMDTVTVSSMLPICAQSNDVVGGVLVHL 272

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           ++ K GL SDV+++N+LI+ Y+  G L  A +VFD M  R LVSWN +I A+ Q  +  +
Sbjct: 273 YVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVT 332

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL  F+ M  +   PD  T  S+ S    L+   +G   H +++R C   L  D+++ N+
Sbjct: 333 ALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVR-C-RWLEVDIVIGNA 390

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L++MY K GS+D AR VFE +P RD+ SWN++I G+A +G A  A+  ++ +    +  P
Sbjct: 391 LVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVP 450

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N  T+V +L A +H G + +G      +I       V     CL+D+  + G +++A+ L
Sbjct: 451 NQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVA-TCLIDMYGKCGRLEDAMSL 509

Query: 399 VSNMPMKPDAVIWRSLLDA 417
              +P +  +V W +++ +
Sbjct: 510 FYEIPQET-SVPWNAIISS 527



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 188/374 (50%), Gaps = 12/374 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWN 102
           C +++  KQ+HA  L   L +    +L+   +  +A+  DL  +   F  I+  N F+WN
Sbjct: 61  CTNINVAKQLHA--LLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWN 118

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           +++ A  R    +  ++     ++    V PD +TFP  LKAC    + + G++ H  + 
Sbjct: 119 SMVSAYVRRGRYR-DSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCWVL 174

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G   DVY+  SLIH Y+  G +++A+KVF +M  R + SWN MI  F Q G    AL+
Sbjct: 175 KMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALR 234

Query: 223 LFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +  RM+    + D  T  S+   CA    +  G+  H Y+++   H L +DV V+N+LI+
Sbjct: 235 VLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK---HGLESDVFVSNALIN 291

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY K G L  A++VF+ M  RDL SWNSII  +  +     AL +F  ++      P+ +
Sbjct: 292 MYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLF-VGMRPDLL 350

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T V + S          GR     ++    +   +     LV++ A+ G+ID A  +   
Sbjct: 351 TVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQ 410

Query: 402 MPMKPDAVIWRSLL 415
           +P + D + W +L+
Sbjct: 411 LPSR-DVISWNTLI 423



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 141/286 (49%), Gaps = 22/286 (7%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F    ++C  +   +  KQ HA +   G   DV +   L+  YA+ G L L++  F ++ 
Sbjct: 54  FNLVFRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGM 255
            +++ SWN M+ A+V+ G +  ++     +  L    PD YTF  +  AC  LA    G 
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GE 167

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H ++L+        DV V  SLI +Y + G++++A +VF  MP RD+ SWN++I GF 
Sbjct: 168 KMHCWVLK---MGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFC 224

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G    AL+  DR+  EE    +++T   +L  C     V  G     V+++ Y I   
Sbjct: 225 QNGNVAEALRVLDRMKTEE-VKMDTVTVSSMLPICAQSNDVVGG-----VLVHLYVIKHG 278

Query: 376 LEH----YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           LE        L+++ ++ G + +A  +   M ++ D V W S++ A
Sbjct: 279 LESDVFVSNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA 323


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 306/520 (58%), Gaps = 17/520 (3%)

Query: 100  TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +WN ++    +S  ++ +A+  F  M E G +  D+ T   A+KA   L    QGKQ  A
Sbjct: 1066 SWNAIMFGYIKSNKSR-KALEHFSLMHEMG-IPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 160  HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            +  K G  +D+++++ ++  Y  CG +  A ++F  +     V+W  MI  +++ G+ D 
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 220  ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
            AL ++  M++   +PD YTF ++  A + L  L  G   HA +++  D+SL  D  V  S
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK-LDYSL--DHFVGTS 1240

Query: 279  LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
            L+DMYCKCGS+  A +VF  M  R +  WN+++LG A HG  + AL  F R +      P
Sbjct: 1241 LVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLF-RTMQSNGIQP 1299

Query: 339  NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
            + +TF+GVLSAC+H G+ SE   YFD M   Y ITP +EHY CLVD L RAG I EA ++
Sbjct: 1300 DKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENV 1359

Query: 399  VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SGVYVLLSRVYA 455
            +++MP K  A ++R+LL AC  K  +     E AK+V +    +    S  YVLLS +YA
Sbjct: 1360 IASMPFKASASMYRALLGACRTKGDA-----ETAKRVADKLLALDPSDSSAYVLLSNIYA 1414

Query: 456  SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
            ++R+W+DV   R +M  K V K+PG S I++    H F   D SHPQ   IY  ++ + +
Sbjct: 1415 ASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMK 1474

Query: 516  KLKSRG-YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +++  G Y PD +   ++D  ++ K+ +L  HSE+LAIA G+++  P   IRV KNLRVC
Sbjct: 1475 RIREEGSYVPD-TDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533

Query: 575  KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             DCH   K IS++   EI++RD  RFHHF++G+CSC DYW
Sbjct: 1534 GDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 186/387 (48%), Gaps = 20/387 (5%)

Query: 36   LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF-RVFYQIE 94
            +LS+      +   +QIHA  ++++       + + + +++  S A + YA  + F    
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFA---PVVPVSNSLMNMYSKAGVVYAAEKTFINSP 956

Query: 95   NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA---F 151
              +  +WNT+I + A++ + + +AI  F+ ++  G + PD+ T    L+AC+       F
Sbjct: 957  ELDLISWNTMISSYAQN-NLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYF 1014

Query: 152  SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            + G Q H +  K G+++D +++ +LI  Y+  G +D A  +     +  L SWN ++  +
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 212  VQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            ++  +   AL+ F  M  +  P D  T  +   A   L  L  G    AY ++       
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK---LGFN 1131

Query: 271  TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             D+ V++ ++DMY KCG +  A ++F  + + D  +W ++I G+  +G  + AL  +  +
Sbjct: 1132 NDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLM 1191

Query: 331  VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLAR 388
             V     P+  TF  ++ A +    + +G+    +  N   +   L+H+    LVD+  +
Sbjct: 1192 RV-SGVQPDEYTFATLIKASSCLTALEQGK---QIHANVVKLDYSLDHFVGTSLVDMYCK 1247

Query: 389  AGNIDEALHLVSNMPMKPDAVIWRSLL 415
             G++ +A  +   M ++   V W ++L
Sbjct: 1248 CGSVQDAYRVFRKMDVRK-VVFWNAML 1273



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 11/181 (6%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK+AHA I   G + D Y+ N+LI  Y+ CG L  A +VFD   +R LV+WN ++ A+ Q
Sbjct: 630 GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 214 FGE--FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM-----WAHAYILRHCD 266
           F +  +++ L+ FR   +L E  G++   +T A      L  G        H Y ++   
Sbjct: 690 FADSSYENVLEGFRLFGLLREF-GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK--- 745

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                D+ V+ +L+++YCK G +  AR +F+ MP+RD   WN ++  +  +   + AL++
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 327 F 327
           F
Sbjct: 806 F 806



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 161/384 (41%), Gaps = 51/384 (13%)

Query: 50  KQIHAQALRTA-LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           K+ HA+ + +  LP ++   L  + I  ++    L  A +VF +  + +  TWN+++ A 
Sbjct: 631 KRAHARIVTSGDLPDRY---LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAY 687

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF--------AFSQ-GKQAHA 159
           A+  D+       ++ ++E   +      F F++                F Q  +  H 
Sbjct: 688 AQFADSS------YENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           +  K G   D++++ +L++ Y   G +  A  +FD M ER  V WNVM+ A+V+    D 
Sbjct: 742 YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL+ F    +  F PD   F ++     G+                      +DV  N  
Sbjct: 802 ALRFFSAFHRSGFXPD---FSNLHCVIGGVN---------------------SDVSNNRK 837

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
                 K      A ++F      ++ +WN  +  F   G+  AA+  F + ++  +   
Sbjct: 838 RHAEQVKA----YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCF-KTLLRSTIGH 892

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           +S+T V +LSA      +  G     ++I   +  PV+     L+++ ++AG +  A   
Sbjct: 893 DSVTLVIILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 399 VSNMPMKPDAVIWRSLLDACCKKH 422
             N P + D + W +++ +  + +
Sbjct: 952 FINSP-ELDLISWNTMISSYAQNN 974


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/591 (35%), Positives = 327/591 (55%), Gaps = 30/591 (5%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G+  +   ++S+L  C     L+   +IH Q +R+ L  +   ++  S I  +     +D
Sbjct: 220 GNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSEL--ELDIMVQTSLIDMYGKCGKVD 277

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
           YA RVF +I + N   WN +I                   M E   V+PD  T    L +
Sbjct: 278 YAERVFNRIYSKNIVAWNAMIGG-----------------MQEDDKVIPDVITMINLLPS 320

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C+   A  +GK  H    ++  +  + +  +L+  Y  CG L LA  VF+ M E+++VSW
Sbjct: 321 CSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSW 380

Query: 205 NVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N M+ A+VQ  ++  ALK+F+  +    +PD  T  S+  A A LA+ S G   H+YI++
Sbjct: 381 NTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMK 440

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                L ++  ++N+++ MY KCG L  AR+ F+ M  +D+ SWN++I+ +A+HG    +
Sbjct: 441 L---GLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTS 497

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           +++F  +   + F PN  TFV +L+AC+  G++ EG  +F+ M  EY I P +EHYGC++
Sbjct: 498 IQFFSEMR-GKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCML 556

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL R GN+DEA   +  MP+ P A IW SLL A  + H  VVL+E  A+ ++  +    
Sbjct: 557 DLLGRNGNLDEAKCFIEEMPLVPTARIWGSLL-AASRNHNDVVLAELAARHILSLKHD-N 614

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +G YVLLS +YA A RW DV  ++ LM ++G+ K  GCS ++I+G +  F   D SH  T
Sbjct: 615 TGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHT 674

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
             IY  LD++ +K+    Y    ++   +D +   + +S   HS +LAI  G+++   G 
Sbjct: 675 NLIYDVLDILLKKIGEDIYLHSLTKFRPLD-VAKKRGNSPEYHSVKLAICFGLISTAIGN 733

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           P+ V KN R+C DCH   K IS++   EI+V D   FHHF+DG CSC DYW
Sbjct: 734 PVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 24/333 (7%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  +F ++ + ++F WN +IR    +     +AI  + RM  +G +  D  TFPF +KAC
Sbjct: 77  ALDMFEKMNHSDTFIWNVIIRGYTNN-GLFQEAIDFYYRMECEG-IRSDNFTFPFVIKAC 134

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             L A   G++ H  + K G   DVY+ N LI  Y   G ++LA KVFD M  R LVSWN
Sbjct: 135 GELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWN 194

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            M+  +   G+  S+L  F+ M ++  + D +   S   AC+    L  GM  H  ++R 
Sbjct: 195 SMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIR- 253

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L  D++V  SLIDMY KCG +D A +VF  +  +++ +WN++I G          +
Sbjct: 254 --SELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG----------M 301

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           +  D+++      P+ IT + +L +C+  G + EG+      I +    P L     LVD
Sbjct: 302 QEDDKVI------PDVITMINLLPSCSQSGALLEGKSIHGFAIRKM-FLPYLVLETALVD 354

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +  + G +  A H+ + M  K + V W +++ A
Sbjct: 355 MYGKCGELKLAEHVFNQMNEK-NMVSWNTMVAA 386



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           +D+ I   L  F  S G +  A  +F+ M       WNV+I  +   G F  A+  + RM
Sbjct: 57  NDLNITRDLCGFVES-GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRM 115

Query: 228 QIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
           +      D +TF  +  AC  L  L +G   H  +++        DV V N LIDMY K 
Sbjct: 116 ECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIK---IGFDLDVYVCNFLIDMYLKI 172

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G +++A +VF+ MP RDL SWNS++ G+ + G   ++L  F  + +      +    +  
Sbjct: 173 GFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEM-LRLGNKADRFGMISA 231

Query: 347 LSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           L AC+    +  G + +  V+ +E  +  +++    L+D+  + G +D A   V N    
Sbjct: 232 LGACSIEHCLRSGMEIHCQVIRSELELDIMVQT--SLIDMYGKCGKVDYA-ERVFNRIYS 288

Query: 406 PDAVIWRSLL 415
            + V W +++
Sbjct: 289 KNIVAWNAMI 298


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 339/608 (55%), Gaps = 34/608 (5%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
              + S+L    + KS+   ++IH+  +  +   +   +L    +  + +  DL    R+
Sbjct: 101 LRTYCSVLQLCADLKSIQDGRRIHS--IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRI 158

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-----------NVLPDKHTF 138
           F ++ N   F WN L+   A+  + + +++ LF+RM E G           + L D+   
Sbjct: 159 FDKVANEKVFLWNLLMNGYAKIGNFR-ESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 139 PFALKACAYLF--AFSQGKQAHAHIFKRGLVSDV--------YINNSLIHFYASCGHLDL 188
            +      Y+      +G      +   G+ +D+         +NN L+  Y+  G+L+ 
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNS 277

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACA 246
           A +VF+ M ERS+VSW  MI  + + G  D +++LF  M+   LF P+  T   I  ACA
Sbjct: 278 AIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF-PNSITMACILPACA 336

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            LA L  G   H +ILR+       D  V N+L+DMY KCG+L +AR +F+ +P++DL S
Sbjct: 337 SLAALERGQEIHGHILRN---GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVS 393

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W  +I G+ +HG    A+  F+ +       P+ ++F+ +L AC+H G++ EG  +F++M
Sbjct: 394 WTVMIAGYGMHGYGSEAIAAFNEMR-NSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM 452

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
            N   I P  EHY C+VDLLARAGN+ +A   +  MP++PDA IW +LL   C+ +  V 
Sbjct: 453 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL-CGCRIYHDVK 511

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           L+E+VA+ V E E    +G YVLL+ +YA A +W +V  +R+ +  +G+ K PGCS IEI
Sbjct: 512 LAEKVAEHVFELEPE-NTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEI 570

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
            G  H F  GD+SHP   +I   L     ++K  G+ P   + A++   D  K+ +L  H
Sbjct: 571 KGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKM-RYALIKADDTEKEMALCGH 629

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE++A+A GIL+L PG  +RV KNLRVC DCHE+ K +S++   +II+RD  RFHHFKDG
Sbjct: 630 SEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDG 689

Query: 607 SCSCMDYW 614
           SCSC  +W
Sbjct: 690 SCSCRGHW 697


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 329/570 (57%), Gaps = 19/570 (3%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTLIRAC 108
           +QIH  A++T+       + + + ++ F S  D +D A  +F ++   +  ++N +I   
Sbjct: 264 QQIHGLAIKTSYVWD---IFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGY 320

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGL 166
           A +   + ++  LF+R+  QG    D+  FPFA  L   A     S G+Q HA       
Sbjct: 321 AWNGQYE-KSFDLFKRL--QGTSF-DRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTA 376

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           VS+V + N+L+  YA C   + AN++F N+  R+ V W  +I  +VQ G  + ALK+F+ 
Sbjct: 377 VSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKE 436

Query: 227 M-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M +     D  TF S   A A LA++SLG   H+ ++R     L++ V   + L+DMY  
Sbjct: 437 MNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRL---GLLSSVFSGSVLVDMYAN 493

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGS+  A +VF+ MP R++  WN++I  ++ +G AEA    F  ++ E    P+S++F+ 
Sbjct: 494 CGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMI-ESGLYPDSVSFLS 552

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL+AC+HRG+V +   YF+ M   Y + P  +HY  ++D+L R+G  +EA +L+S MP +
Sbjct: 553 VLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFE 612

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           PD V+W S+L++C + H +  L+++ A Q+ + +    +  YV +S +YA A +W +   
Sbjct: 613 PDEVMWSSVLNSC-RIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAK 671

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           V+K M ++GV K    S +EID   H F A D +HPQT+QI   ++ + E +   GY PD
Sbjct: 672 VKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPD 731

Query: 526 YS-QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
            S     VDE  + K  SL+ HSERLAIA  ++N   G PI + KNLR C DCH   K+I
Sbjct: 732 TSCTLQNVDE--EMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVI 789

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S+I   EI VRD +RFHHF+DGSCSC DYW
Sbjct: 790 SKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 208/439 (47%), Gaps = 20/439 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFADLDYAFRVFYQ 92
           ++LLS   +  ++ ++ QIH+  +R        +L++++ ++  +     LD A ++F +
Sbjct: 147 ATLLSGFDDTTTLKEVLQIHSHIIRFGFSA---SLIVFNSLVDSYCKTCCLDIASQLFSE 203

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +S ++N +I    +    + +A+ LF +M    +  P   TF   L          
Sbjct: 204 MPTKDSVSFNVMITGYTK-YGFREEALKLFMQM-RNMDFQPSGFTFAAMLGMSVGSEDVI 261

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q H    K   V D+++ N+L+ FY+   ++DLA  +FD M E   VS+N++I  + 
Sbjct: 262 FGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYA 321

Query: 213 QFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G+++ +  LF+R+Q   F+   + F ++ S  A    LS+G   HA   +    + V+
Sbjct: 322 WNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHA---QAVVTTAVS 378

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +V V N+L+DMY KC   + A ++F ++  R+   W +II  +   G  E ALK F  + 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEM- 437

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
             E+   +  TF   L A  +   VS G+     +I    ++ V      LVD+ A  G+
Sbjct: 438 NRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSG-SVLVDMYANCGS 496

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + +A+ +   MP + + V W +L+ A  +   +       A  +   E G+       LS
Sbjct: 497 MKDAIEVFKEMPDR-NIVCWNALISAYSQNGDAEATFSSFADMI---ESGLYPDSVSFLS 552

Query: 452 RVYASARRWNDVGLVRKLM 470
            + A + R    GLV K +
Sbjct: 553 VLTACSHR----GLVEKAL 567



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 167/337 (49%), Gaps = 9/337 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  +F  + + N  +W  +I   +++   K +A  L+  M   G V PD  TF   L   
Sbjct: 96  ARELFESMFSRNEVSWTIMIGGYSQNNQPK-EAFNLYTEMCRSG-VKPDHITFATLLSGF 153

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
                  +  Q H+HI + G  + + + NSL+  Y     LD+A+++F  M  +  VS+N
Sbjct: 154 DDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFN 213

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           VMI  + ++G  + ALKLF +M+ + F+P G+TF ++     G   +  G   H   ++ 
Sbjct: 214 VMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIK- 272

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              S V D+ V N+L+D Y K   +D+A+ +F+ MP+ D  S+N II G+A +G+ E + 
Sbjct: 273 --TSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSF 330

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F RL    SF   +  F  +LS       +S GR      +    ++ V +    LVD
Sbjct: 331 DLFKRL-QGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEV-QVGNALVD 388

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           + A+    ++A  + +N+  + ++V W +++    +K
Sbjct: 389 MYAKCEKFEDANRIFANLAYR-NSVPWTAIISIYVQK 424


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 306/520 (58%), Gaps = 17/520 (3%)

Query: 100  TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +WN ++    +S  ++ +A+  F  M E G +  D+ T   A+KA   L    QGKQ  A
Sbjct: 1066 SWNAIMFGYIKSNKSR-KALEHFSLMHEMG-IPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 160  HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
            +  K G  +D+++++ ++  Y  CG +  A ++F  +     V+W  MI  +++ G+ D 
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 220  ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
            AL ++  M++   +PD YTF ++  A + L  L  G   HA +++  D+SL  D  V  S
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK-LDYSL--DHFVGTS 1240

Query: 279  LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
            L+DMYCKCGS+  A +VF  M  R +  WN+++LG A HG  + AL  F R +      P
Sbjct: 1241 LVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLF-RTMQSNGIQP 1299

Query: 339  NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
            + +TF+GVLSAC+H G+ SE   YFD M   Y ITP +EHY CLVD L RAG I EA ++
Sbjct: 1300 DKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENV 1359

Query: 399  VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SGVYVLLSRVYA 455
            +++MP K  A ++R+LL AC  K  +     E AK+V +    +    S  YVLLS +YA
Sbjct: 1360 IASMPFKASASMYRALLGACRTKGDA-----ETAKRVADKLLALDPSDSSAYVLLSNIYA 1414

Query: 456  SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
            ++R+W+DV   R +M  K V K+PG S I++    H F   D SHPQ   IY  ++ + +
Sbjct: 1415 ASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMK 1474

Query: 516  KLKSRG-YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +++  G Y PD +   ++D  ++ K+ +L  HSE+LAIA G+++  P   IRV KNLRVC
Sbjct: 1475 RIREEGSYVPD-TDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533

Query: 575  KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             DCH   K IS++   EI++RD  RFHHF++G+CSC DYW
Sbjct: 1534 GDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 186/387 (48%), Gaps = 20/387 (5%)

Query: 36   LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF-RVFYQIE 94
            +LS+      +   +QIHA  ++++       + + + +++  S A + YA  + F    
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFA---PVVPVSNSLMNMYSKAGVVYAAEKTFINSP 956

Query: 95   NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA---F 151
              +  +WNT+I + A++ + + +AI  F+ ++  G + PD+ T    L+AC+       F
Sbjct: 957  ELDLISWNTMISSYAQN-NLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYF 1014

Query: 152  SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            + G Q H +  K G+++D +++ +LI  Y+  G +D A  +     +  L SWN ++  +
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 212  VQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            ++  +   AL+ F  M  +  P D  T  +   A   L  L  G    AY ++       
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK---LGFN 1131

Query: 271  TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             D+ V++ ++DMY KCG +  A ++F  + + D  +W ++I G+  +G  + AL  +  +
Sbjct: 1132 NDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLM 1191

Query: 331  VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLAR 388
             V     P+  TF  ++ A +    + +G+    +  N   +   L+H+    LVD+  +
Sbjct: 1192 RV-SGVQPDEYTFATLIKASSCLTALEQGK---QIHANVVKLDYSLDHFVGTSLVDMYCK 1247

Query: 389  AGNIDEALHLVSNMPMKPDAVIWRSLL 415
             G++ +A  +   M ++   V W ++L
Sbjct: 1248 CGSVQDAYRVFRKMDVRK-VVFWNAML 1273



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 11/181 (6%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK+AHA I   G + D Y+ N+LI  Y+ CG L  A +VFD   +R LV+WN ++ A+ Q
Sbjct: 630 GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 214 FGE--FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM-----WAHAYILRHCD 266
           F +  +++ L+ FR   +L E  G++   +T A      L  G        H Y ++   
Sbjct: 690 FADSSYENVLEGFRLFGLLREF-GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK--- 745

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                D+ V+ +L+++YCK G +  AR +F+ MP+RD   WN ++  +  +   + AL++
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 327 F 327
           F
Sbjct: 806 F 806



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 161/384 (41%), Gaps = 51/384 (13%)

Query: 50  KQIHAQALRTA-LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           K+ HA+ + +  LP ++   L  + I  ++    L  A +VF +  + +  TWN+++ A 
Sbjct: 631 KRAHARIVTSGDLPDRY---LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAY 687

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF--------AFSQ-GKQAHA 159
           A+  D+       ++ ++E   +      F F++                F Q  +  H 
Sbjct: 688 AQFADSS------YENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           +  K G   D++++ +L++ Y   G +  A  +FD M ER  V WNVM+ A+V+    D 
Sbjct: 742 YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801

Query: 220 ALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           AL+ F    +  F PD   F ++     G+                      +DV  N  
Sbjct: 802 ALRFFSAFHRSGFFPD---FSNLHCVIGGVN---------------------SDVSNNRK 837

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
                 K      A ++F      ++ +WN  +  F   G+  AA+  F + ++  +   
Sbjct: 838 RHAEQVKA----YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCF-KTLLRSTIGH 892

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           +S+T V +LSA      +  G     ++I   +  PV+     L+++ ++AG +  A   
Sbjct: 893 DSVTLVIILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 399 VSNMPMKPDAVIWRSLLDACCKKH 422
             N P + D + W +++ +  + +
Sbjct: 952 FINSP-ELDLISWNTMISSYAQNN 974


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/572 (38%), Positives = 322/572 (56%), Gaps = 24/572 (4%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           +H  A++  L    K L + + +I  +     L+ A  VF+ +E  +  TWN++I  C +
Sbjct: 191 MHVYAVKHGL---DKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQ 247

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSD 169
                  A+ +FQ M   G V PD  T      A A        K  H ++ +RG  V D
Sbjct: 248 R-GQTAAALKMFQGMRGSG-VSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDD 305

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           +   N+++  YA   +++ A ++FD+M  +  VSWN +I  ++Q G  + A++ +  MQ 
Sbjct: 306 IIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ- 364

Query: 230 LFEPDGY-----TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
             + +G      TF S+  A + L  L  GM  HA  ++     L  DV V   LID+Y 
Sbjct: 365 --KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKI---GLNVDVYVGTCLIDLYA 419

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG L  A  +FE MP+R    WN+II G  +HG    AL  F R+  +E   P+ +TFV
Sbjct: 420 KCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQ-QEGIKPDHVTFV 478

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +L+AC+H G+V +GR +FDVM   Y+I P+ +HY C+ D+L RAG +DEA + + NMP+
Sbjct: 479 SLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPI 538

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           KPD+ +W +LL A C+ H +V + +  ++ + E +     G YVL+S +YA   +W+ V 
Sbjct: 539 KPDSAVWGALLGA-CRIHGNVEMGKVASQNLFELDPENV-GYYVLMSNMYAKVGKWDGVD 596

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS--HPQTKQIYGFLDLIDEKLKSRGY 522
            VR L+  + + K PG SSIE+    + F++G+ +  HPQ ++I   L  +  K++S GY
Sbjct: 597 EVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGY 656

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
             DYS   + D  DD K+  L  HSERLAIA GI+N     P+ ++KNLRVC DCH  TK
Sbjct: 657 VSDYS-FVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATK 715

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IS+I   EIIVRD  RFHHFKDG CSC D+W
Sbjct: 716 YISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 196/425 (46%), Gaps = 45/425 (10%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENP 96
           S +    S +   Q+HA ALR  L +   ++     ++H +  F  +  A++VF ++   
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVR--PSVFTSGSLVHAYLRFGRISEAYKVFDEMSER 132

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           +   WN ++    R+  A  +A+ LF RM+ +G V  D  T    L  C  L        
Sbjct: 133 DVPAWNAMLSGLCRNARAA-EAVGLFGRMVGEG-VAGDTVTVSSVLPMCVLLGDQVLALV 190

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H +  K GL  ++++ N+LI  Y   G L+ A  VF  M  R LV+WN +I    Q G+
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250

Query: 217 FDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
             +ALK+F+ M+     PD  T  S+ SA A           H Y++R      V D++ 
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD--VDDIIA 308

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            N+++DMY K  +++ A+++F+SMP +D  SWN++I G+  +G A  A++ +  +   E 
Sbjct: 309 GNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEG 368

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
                 TFV VL A +H G + +G     + I +  +   +    CL+DL A+ G + EA
Sbjct: 369 LKAIQGTFVSVLPAYSHLGALQQGMRMHALSI-KIGLNVDVYVGTCLIDLYAKCGKLAEA 427

Query: 396 LHLVSNMP----------------------------------MKPDAVIWRSLLDACCKK 421
           + L   MP                                  +KPD V + SLL AC   
Sbjct: 428 MLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAAC--S 485

Query: 422 HASVV 426
           HA +V
Sbjct: 486 HAGLV 490



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 159/322 (49%), Gaps = 22/322 (6%)

Query: 102 NTLIRACARSVDAKPQ-AIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHA 159
           NTLI A +R+  A P+ A  L + ++       PD  TFP  ++A     + +   Q HA
Sbjct: 37  NTLIAAFSRA--ALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAP---SNASAAQLHA 91

Query: 160 HIFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
              + GLV   V+ + SL+H Y   G +  A KVFD M ER + +WN M+    +     
Sbjct: 92  CALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAA 151

Query: 219 SALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            A+ LF RM       D  T  S+   C  L    L +  H Y ++   H L  ++ V N
Sbjct: 152 EAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVK---HGLDKELFVCN 208

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +LID+Y K G L+ A+ VF  M  RDL +WNSII G    G+  AALK F  +      S
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGM-RGSGVS 267

Query: 338 PNSITFVGVLSACNHRGMVSEGRD----YFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           P+ +T V + SA    G   +GR     +  VM   +++  ++     +VD+ A+  NI+
Sbjct: 268 PDVLTLVSLASAIAQGG---DGRSAKSLHCYVMRRGWDVDDIIAG-NAIVDMYAKLSNIE 323

Query: 394 EALHLVSNMPMKPDAVIWRSLL 415
            A  +  +MP++ D+V W +L+
Sbjct: 324 AAQRMFDSMPVQ-DSVSWNTLI 344



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 205 NVMIDAFVQFGEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           N +I AF +      A  L R +      F PDG+TF S+  A    A+ +     HA  
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAA---QLHACA 93

Query: 262 LRHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           LR     LV   V  + SL+  Y + G +  A +VF+ M +RD+ +WN+++ G   + RA
Sbjct: 94  LRL---GLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARA 150

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL--EH 378
             A+  F R+ V E  + +++T   VL  C     V  G     ++++ Y +   L  E 
Sbjct: 151 AEAVGLFGRM-VGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDKEL 204

Query: 379 YGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           + C  L+D+  + G ++EA  +   M  + D V W S++  C ++
Sbjct: 205 FVCNALIDVYGKLGMLEEAQCVFHGMECR-DLVTWNSIISGCEQR 248


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 320/570 (56%), Gaps = 45/570 (7%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
              + A   F ++ + +  +WN++I   ++      +A+V+F +M+ + ++ PD  T   
Sbjct: 222 GQFELAASQFEKMPDRDIVSWNSMISGYSQQ-GYNLEALVIFSKMLNEPSLKPDNFTLAS 280

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN---------- 190
            L ACA L   + GKQ HA+I +    +   + N+LI  YA  G +++A           
Sbjct: 281 ILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSN 340

Query: 191 -----------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
                                  ++F+ + +R +V+W  MI  +VQ G ++ AL+LFR M
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400

Query: 228 -QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                EP+ YT  ++ S  + L  L  G   HA  ++  + S  +   V N+LI MY K 
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS---VTNALIAMYAKT 457

Query: 287 GSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           G++++A++VF+ +P  K+++ SW S+I+  A HG  + A+  F+R++      P+ IT+V
Sbjct: 458 GNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML-SVGMKPDHITYV 515

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVLSAC H G+V +GR Y+++M   + I P L HY C++DL  RAG + EA   + +MP+
Sbjct: 516 GVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPI 575

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +PD + W SLL A CK H +  L++  A++++  + G  SG Y+ L+ VY++  +W +  
Sbjct: 576 EPDNIAWGSLL-ASCKIHKNADLAKVAAERLLLIDPG-NSGAYLALANVYSACGKWENAA 633

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
             RKLM D+GV KE G S I I    H F   D  HPQ  +IY  +  I E++K  G+ P
Sbjct: 634 QTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIP 693

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           D +++ + D  ++ K+  L+ HSE+LAIA G+LN      +R+ KNLRVC DCH   K I
Sbjct: 694 D-TESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFI 752

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S++   EIIVRD  RFHHFKDGSCSC DYW
Sbjct: 753 SKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 200/469 (42%), Gaps = 108/469 (23%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           + +H Q ++  L   H  + + + ++ F A    L +A  VF ++   ++F+WNTLI   
Sbjct: 30  RSVHCQIIKKGL---HLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 109 ARS-------------VDAKP-----------------QAIVLFQRMIEQGNVLPDKHTF 138
           A+               D  P                  AI +F +MI +  V P + T 
Sbjct: 87  AKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE-RVPPSQFTV 145

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              L +CA       G++ H+ + K GL S V +  SL++ YA CG   +A  VFD M  
Sbjct: 146 SNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTV 205

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQ------------------------ILF--- 231
           +++ +WN +I  ++Q G+F+ A   F +M                         ++F   
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKM 265

Query: 232 ------EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                 +PD +T  SI SACA L  L++G   HAYILR       T   V N+LI MY K
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE---TSGAVGNALISMYAK 322

Query: 286 CGSLDI---------------------------------ARQVFESMPKRDLTSWNSIIL 312
            G ++I                                 AR++F  +  RD+ +W ++I+
Sbjct: 323 SGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIV 382

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YN 371
           G+  +G    AL+ F RL+V E   PNS T   +LS  +   ++  G+      I    +
Sbjct: 383 GYVQNGLWNDALELF-RLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES 441

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            TP + +   L+ + A+ GNI+ A  +      K + V W S++ A  +
Sbjct: 442 STPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 176/418 (42%), Gaps = 83/418 (19%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E GN       F   L+    +     G+  H  I K+GL   VY+ N+L+ FYA  G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFV-------------------------------QF 214
           L  A+ VFD M  +S  SWN +I  +                                QF
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR---------- 263
           G FD+A+ +F +M      P  +T  ++ S+CA   TL +G   H+++++          
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 264 --------HCDHSLVTDVLVN----------NSLIDMYCKCGSLDIARQVFESMPKRDLT 305
                    C   ++  V+ +          N+LI +Y + G  ++A   FE MP RD+ 
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWNS+I G++  G    AL  F +++ E S  P++ T   +LSAC +   ++ G+     
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ---- 296

Query: 366 MINEYNITPVLEHYG----CLVDLLARAGNIDEALHLVS-NMPMKPDAVIWRSLLDACCK 420
            I+ Y +    E  G     L+ + A++G ++ A  +V  N     + + + SLLD   K
Sbjct: 297 -IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 421 ----KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
               K A  + ++   + V+     I           Y     WND   + +LM ++G
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVG---------YVQNGLWNDALELFRLMVNEG 404


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/444 (41%), Positives = 278/444 (62%), Gaps = 8/444 (1%)

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
           +NN+L+  YA  G+ D A  VF+ M ++ ++SW  ++   V  G ++ AL+LF  M+I+ 
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
             PD     ++ SACA L  L  G   HA  L+     L + + V+NSL+ MY KCG ++
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS---GLGSSLSVDNSLVSMYAKCGCIE 120

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            A +VF+SM  +D+ +W ++I+G+A +GR   +L +++ ++      P+ ITF+G+L AC
Sbjct: 121 DANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIAS-GVKPDFITFIGLLFAC 179

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H G+V  GR YF  M   Y I P  EHY C++DLL R+G + EA  L++ M ++PDA +
Sbjct: 180 SHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATV 239

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           W++LL A C+ H +V L E  A  + E E    +  YVLLS +Y++A +W +    R+LM
Sbjct: 240 WKALL-AACRVHGNVELGERAANNLFELEPK-NAVPYVLLSNLYSAAGKWEEAAKTRRLM 297

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
             +GV+KEPGCS IE+    H F + D SHP+T +IY  +D I   +K  GY PD +  A
Sbjct: 298 KLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMN-FA 356

Query: 531 MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNV 590
           + D  ++GK+  L  HSE+LA+A G+L + PG PIR+FKNLR+C DCH   K +S +F+ 
Sbjct: 357 LHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHR 416

Query: 591 EIIVRDRARFHHFKDGSCSCMDYW 614
            +I+RD   FHHF++G+CSC DYW
Sbjct: 417 HVILRDSNCFHHFREGACSCSDYW 440



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 26/279 (9%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A     DYAF VF ++ + +  +W +L+  C  +  +  +A+ LF  M   G + PD+ 
Sbjct: 12  YAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHN-GSYEEALRLFCEMRIMG-IHPDQI 69

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                L ACA L     GKQ HA+  K GL S + ++NSL+  YA CG ++ ANKVFD+M
Sbjct: 70  VIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSM 129

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
             + +++W  +I  + Q G    +L  +  M     +PD  TF  +  AC          
Sbjct: 130 EIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFAC---------- 179

Query: 256 WAHAYILRHCDHSLVTDVLVNN---------SLIDMYCKCGSLDIARQVFESMP-KRDLT 305
            +HA ++ H      +   V            +ID+  + G L  A+++   M  + D T
Sbjct: 180 -SHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDAT 238

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            W +++    +HG  E   +  + L   E    N++ +V
Sbjct: 239 VWKALLAACRVHGNVELGERAANNLFELE--PKNAVPYV 275



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 3/142 (2%)

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           LVNN+L+DMY K G  D A  VFE M  +D+ SW S++ G   +G  E AL+ F  + + 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI- 61

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               P+ I    VLSAC    ++  G+      +    +   L     LV + A+ G I+
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIE 120

Query: 394 EALHLVSNMPMKPDAVIWRSLL 415
           +A  +  +M ++ D + W +L+
Sbjct: 121 DANKVFDSMEIQ-DVITWTALI 141


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 319/557 (57%), Gaps = 27/557 (4%)

Query: 68   LLIYSRIIHFASFAD-LDYAFRVFYQIENPNSFTWNTLIRA-----CARSVDAKPQAIVL 121
            + + + ++ F S  D LD   R+F ++   ++ ++N +I A     CA +V      + L
Sbjct: 469  VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATV------LRL 522

Query: 122  FQRMIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
            F+ M + G    D+   P+A  L     L     GKQ HA +   GL S+  + N+LI  
Sbjct: 523  FREMQKLGF---DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDM 579

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
            Y+ CG LD A   F N  E+S +SW  +I  +VQ G+ + AL+LF  M+     PD  TF
Sbjct: 580  YSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATF 639

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             SI  A + LA + LG   H+Y++R       + V   + L+DMY KCG LD A + F+ 
Sbjct: 640  SSIIKASSSLAMIGLGRQLHSYLIRS---GYKSSVFSGSVLVDMYAKCGCLDEALRTFDE 696

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            MP+R+  SWN++I  +A +G A+ A+K F+ ++    F+P+S+TF+ VL+AC+H G+  E
Sbjct: 697  MPERNSISWNAVISAYAHYGEAKNAIKMFEGML-HCGFNPDSVTFLSVLAACSHNGLADE 755

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
               YF +M ++Y+I+P  EHY C++D L R G   +   ++  MP K D +IW S+L +C
Sbjct: 756  CMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC 815

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
             + H +  L+   A ++   E    +  YV+LS +YA A +W D   V+K+M D+GV KE
Sbjct: 816  -RIHGNQELARVAADKLFGMEPTDAT-PYVILSNIYARAGQWEDAACVKKIMRDRGVRKE 873

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA-MVDELDD 537
             G S +EI    + F + D + P   +I   LD + +++  +GY PD + A  MVD   +
Sbjct: 874  SGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDH--E 931

Query: 538  GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
             K  SL+ HSERLAIA  ++N   G PIR+ KNL  C DCH V K+IS+I N +IIVRD 
Sbjct: 932  LKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDS 991

Query: 598  ARFHHFKDGSCSCMDYW 614
             RFHHFKDG CSC DYW
Sbjct: 992  RRFHHFKDGVCSCGDYW 1008



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 168/376 (44%), Gaps = 57/376 (15%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+A+   +P  HK +   + I+  ++S  DL  A  +F    + N+ TW  ++RA A + 
Sbjct: 276 ARAMFDQMP--HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA-AA 332

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFP--FALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
                A+ LF+ M+ +G V+PD+ T      L  C            H    K GL + V
Sbjct: 333 GRTSDALSLFRAMLGEG-VIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHV 384

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
           ++ N+L+  Y   G L  A +VF  M ++  V++N M+    + G    AL+LF  M+  
Sbjct: 385 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 444

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
               GY+             L L  ++H+        + V +V VNNSL+D Y KC  LD
Sbjct: 445 ----GYSRHP----------LHLLQYSHS----RSRSTSVLNVFVNNSLLDFYSKCDCLD 486

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
             R++F+ MP+RD  S+N II  +A +  A   L+ F R + +  F    + +  +LS  
Sbjct: 487 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF-REMQKLGFDRQVLPYATMLSVA 545

Query: 351 N-----------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
                       H  +V  G    D++ N             L+D+ ++ G +D A    
Sbjct: 546 GSLPDVHIGKQIHAQLVLLGLASEDLLGN------------ALIDMYSKCGMLDAAKSNF 593

Query: 400 SNMPMKPDAVIWRSLL 415
           SN   K  A+ W +L+
Sbjct: 594 SNRSEK-SAISWTALI 608


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/436 (44%), Positives = 280/436 (64%), Gaps = 8/436 (1%)

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
           +A  G + +  K+FD M ER ++SWN M+ A+V  G+   AL+ F+RM +    PD  T 
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            ++ SA A L  L  G   H+ I      SL   + +  +L+DMY KCG ++ +R +FE+
Sbjct: 65  VTMLSASAQLCLLEHGQSIHSIID---SLSLPMTISIGTALLDMYAKCGCIEQSRLLFEN 121

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           MP+RD+++WN +I G A HG  + AL  F+R +  E   P ++TFVGVL+AC+  G+V E
Sbjct: 122 MPRRDVSTWNVMICGLASHGLGKDALTLFERFL-NEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           GR YF +M + Y I P +EHYGC+VDLL RAG + EA+ ++ +M + PD V+W  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
            + H    L E++  ++IE +     G YV L+ +YA++R+W DV  VR+LM ++  +K 
Sbjct: 241 -RIHGLAELGEKIGNRLIELDPTY-DGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKV 298

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            G S IE  G  H F AG   H Q+ +I   L++I+ +L + GY P+ S   + D  ++ 
Sbjct: 299 AGWSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVS-PVLHDIGEEE 357

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K++++++HSERLAIA G+L   PG  IR+ KNLRVC DCHEVTK+ISR+F  EIIVRD +
Sbjct: 358 KENAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGS 417

Query: 599 RFHHFKDGSCSCMDYW 614
           RFHHFK+G CSC+DYW
Sbjct: 418 RFHHFKEGKCSCLDYW 433



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 118/257 (45%), Gaps = 6/257 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           FA    +    ++F ++   +  +WNT++ A   +     +A+  F+RM E G ++PD+ 
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHN-GKLGEALECFKRMRESG-LVPDEA 62

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L A A L     G+  H+ I    L   + I  +L+  YA CG ++ +  +F+NM
Sbjct: 63  TLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENM 122

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGM 255
             R + +WNVMI      G    AL LF R +     P   TF  + +AC+    +  G 
Sbjct: 123 PRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEG- 181

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGF 314
             H + +    + +  ++     ++D+  + G +  A +V ESM    D   W  ++   
Sbjct: 182 -RHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 315 ALHGRAEAALKYFDRLV 331
            +HG AE   K  +RL+
Sbjct: 241 RIHGLAELGEKIGNRLI 257


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 330/591 (55%), Gaps = 21/591 (3%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY-AF 87
           ++N    LL S    +S+ +  Q+H   +++ L       L+ + +I+F S + L + + 
Sbjct: 14  NYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSL---IPLVANNLINFYSKSQLPFDSR 70

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           R F      ++ TW+++I   A+  +  P   + F R +  G++ PD H  P A K+C  
Sbjct: 71  RAFEDSPQKSATTWSSIISCFAQ--NELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGI 128

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L     GK  H    K G  +DV++ +SL+  YA CG +  A K+FD M  R++V+W+ M
Sbjct: 129 LSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGM 188

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEP---DGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           +  + Q GE + AL LF+  + LFE    + Y+F ++ S CA    L LG       ++ 
Sbjct: 189 MYGYAQMGENEEALWLFK--EALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKS 246

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              S  +   V +SL+ +Y KCG L+ A QVF+ +P R+L  WN+++   A H   +  +
Sbjct: 247 ---SFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVI 303

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           + F R+ +     PN ITF+ VL+AC+H G+V EG+ YFD+M  E  I P  +HY  LVD
Sbjct: 304 ELFKRMKLS-GMKPNFITFLNVLNACSHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVD 361

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           +L RAG ++EAL +V+NMP+ P   +W +LL +C   H +  L+   A +V E  G + S
Sbjct: 362 MLGRAGKLEEALEIVTNMPIDPTESVWGALLTSC-TIHKNTELAAFAADKVFEL-GPVSS 419

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G+++ LS  YA+  R+ D    RKL+ D+G  KE G S +E     H F AG+  H ++K
Sbjct: 420 GMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSK 479

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGM 563
           +IY  L  + E+++  GY  D S   ++ E+D D K  ++R HSERLAIA G++      
Sbjct: 480 EIYEKLAELGEEMEKAGYVADTSY--VLREVDGDEKNQTIRYHSERLAIAFGLITFPADR 537

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLRVC DCH   K +S      IIVRD  RFH F+DG CSC DYW
Sbjct: 538 PIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/629 (35%), Positives = 329/629 (52%), Gaps = 68/629 (10%)

Query: 36  LLSSLTECKSMSQ--LKQIHAQAL---RTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           LL SL    S SQ  L++IHA  L   R A P  H   +         S+A      R+ 
Sbjct: 18  LLPSLVAASSQSQFRLREIHAHLLVSGRLASPSHHADFVASLASSSHLSYA------RLL 71

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
                      N L+RA AR       A   F+ +     + PD ++F F ++A   L A
Sbjct: 72  LPQRPATLLAHNGLLRALARG-PCPGLAFAAFREL----PLAPDHYSFTFLVRAATSLAA 126

Query: 151 FSQ-------------GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL----------- 186
            +                  HA  F+ G  +D ++ +  +  YA+ G +           
Sbjct: 127 AASATPVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIV 186

Query: 187 --------------------DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
                               D A ++FD M +R  V+WN M+  +V+ G    AL LF  
Sbjct: 187 SPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDE 246

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           MQ         T  S+ +ACA +  L  GMW H+Y+   C   +   V +  +L+DMY K
Sbjct: 247 MQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYV---CSRGMRVSVTLGTALVDMYSK 303

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG + ++ +VFE+M +R++ +W S + G A++G  E  L+ F R+       PN +TFV 
Sbjct: 304 CGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRME-SAGMEPNGVTFVA 362

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL  C+  G+V EGR  FD M +++ + P LEHYGC+VDL  RAG +D+A+  +++MP++
Sbjct: 363 VLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVE 422

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           P   +W +LL+A  + H +V L +    ++ E E       +VLLS +YA +  W  V  
Sbjct: 423 PHEGVWGALLNAS-RIHNNVDLGKHAMHKLTEIESK-NDAAHVLLSNIYAESHNWKGVSK 480

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           VR +M  KGV K PGCS+IE+DG  HEFF G  SHP+ K I   L  +  +L+ +GY  +
Sbjct: 481 VRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAAN 540

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            ++  + D  ++ K+ ++ LHSE+LA+A G++ L     IR+ KNLRVCKDCH+ TKLIS
Sbjct: 541 -TKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLIS 599

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++F+ EI++RDR RFHHFK G+CSC DYW
Sbjct: 600 KVFDREIVMRDRNRFHHFKHGACSCRDYW 628


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 316/565 (55%), Gaps = 44/565 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A R+F +  + N   +NT++   AR   A+ +A+ +   M++QG   PD+ T   A+
Sbjct: 283 IDAAKRLFDECVDRNLVLYNTILSNYARQGLAR-EALAILDEMLQQGP-RPDRVTMLSAI 340

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            A A L     GK  H ++ + GL     I N +I  Y  CG  ++A +VFD M  +++V
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400

Query: 203 SWN-------------------------------VMIDAFVQFGEFDSALKLFRRMQIL- 230
           SWN                                MI   VQ   F+ A++LFR MQ   
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            + D  T   I SAC  L    L  W H YI ++    +  D+ +N +L+DM+ +CG   
Sbjct: 461 IKADRVTMMGIASACGYLGAPELAKWVHTYIEKN---GIPCDMRLNTALVDMFARCGDPQ 517

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            A QVF  M +RD+++W + I   A+ G  E A   F++++++    P+ + FV VL+AC
Sbjct: 518 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ-GVKPDVVLFVQVLTAC 576

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H G V +G   F +M  ++ I+P +EHYGC+VDLL RAG + EA  L+ +MPM+P+ V+
Sbjct: 577 SHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV 635

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           W SLL A C+ H +V ++   A+++ E      +GV+VLLS +YASA +W DV  VR  +
Sbjct: 636 WGSLL-AACRVHKNVEMATYAAERINELAPQR-AGVHVLLSNIYASAGKWTDVARVRLNL 693

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
            +KGV K PG SS++++G+ HEF +GD SHP+   I   L  ++ +    G+ PD S   
Sbjct: 694 REKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVL 753

Query: 531 M-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
           + VDE +  K+  L  HSE+LAIA G++     MPIRV KNLR+C DCH   K+ S I+N
Sbjct: 754 LDVDEQE--KEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYN 811

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            EIIVRD  RFH F+ G CSC DYW
Sbjct: 812 REIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 215/425 (50%), Gaps = 44/425 (10%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQ 92
           S L  SL  CK+++QLKQ+H Q  +  L Q   TL  + +     AS   LDYA + F  
Sbjct: 26  SCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFEL 85

Query: 93  I-ENPNS----FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
             E+  S    F  N+LIR  + S     +AI+L+ RM+  G V P+ +TFPF L  C  
Sbjct: 86  FKEDVRSDDALFMLNSLIRGYS-SAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTK 143

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           + AF +G Q H  + K GL  DV+I N LIHFYA CGH+D  +KVF+ M ER++VSW  +
Sbjct: 144 IAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSL 203

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + +      A+ LF  M +    P   T   + SACA L  L +G    AYI    +
Sbjct: 204 ICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI---GE 260

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  + ++ N+L+DMY KCG++D A+++F+    R+L  +N+I+  +A  G A  AL  
Sbjct: 261 LGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAI 320

Query: 327 FDRLVVEESFSPNSITFVGVLSACN-----------HRGMVSEGRDYFD----VMINEYN 371
            D + +++   P+ +T +  +SA             H  ++  G + +D    V+I+ Y 
Sbjct: 321 LDEM-LQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYM 379

Query: 372 ITPVLEHYGCLVDLLA---------------RAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
                E    + DL++               R G+++ A  + + +P + +AV W +++ 
Sbjct: 380 KCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPER-NAVFWNTMIS 438

Query: 417 ACCKK 421
              +K
Sbjct: 439 GLVQK 443



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 8/269 (2%)

Query: 65  HKTLLIYSRII-HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
           +KT++ ++ +   F    D++ A+ VF QI   N+  WNT+I    +       AI LF+
Sbjct: 396 NKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQK-SLFEDAIELFR 454

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            M  +G +  D+ T      AC YL A    K  H +I K G+  D+ +N +L+  +A C
Sbjct: 455 EMQGEG-IKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARC 513

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           G    A +VF+ M ER + +W   I      G  + A  LF +M I   +PD   F  + 
Sbjct: 514 GDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVL 573

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-K 301
           +AC+    +  G+  H + L   DH +   +     ++D+  + G L  A  + +SMP +
Sbjct: 574 TACSHGGQVEQGL--HIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPME 630

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +   W S++    +H   E A    +R+
Sbjct: 631 PNDVVWGSLLAACRVHKNVEMATYAAERI 659


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 335/587 (57%), Gaps = 20/587 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L++S  E  S+S    +H + + + L Q     L    I  +     +D+A +VF +   
Sbjct: 80  LINSCIEQNSLSDGVDVHHRLVGSGLDQD--PYLATKLINMYCDLGSVDHACKVFDETRE 137

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY----LFAF 151
              F WN + RA A +   +   +VL+ +M   G +  ++ T+ + LKAC      +   
Sbjct: 138 KTIFVWNAIFRALAMASRGE-DLLVLYGQMNWIG-IPSNRFTYTYVLKACVVSELSICPL 195

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +GK+ HAHI + G    V++  +L+  YA  G++  A+ VF  M ++++VSW+ MI  +
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 212 VQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            +      AL+LF+ M +      P+  T  S+  ACA LA L  G   HAY+LR     
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR---G 312

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L + + V N+LI MY +CG +   ++VF+ M KRD+ SWNS+I  + +HG  + A++ F+
Sbjct: 313 LDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFE 372

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            ++     SP+ ITF+ VL AC+H G+V E +  F+ M+N+Y I P +EHY C+VD+L R
Sbjct: 373 NMI-NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGR 431

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           A  +DEA+ L+ NM  KP   +W SLL + C+ H +V L+E  +  + E E    +G YV
Sbjct: 432 ANRLDEAIELIQNMDFKPGPTVWGSLLGS-CRIHCNVELAERASAMLFELEPK-NAGNYV 489

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +YA +R WNDV  VRK +  +G+ K P CS IE+    +   + +  +PQ +++  
Sbjct: 490 LLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCA 549

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL-HSERLAIALGILNLKPGMPIRV 567
           FL  +  ++K++GY P  +   +  +LD+ ++  + L HS +LA+A G++N   G  IR+
Sbjct: 550 FLITLLTEIKNQGYVPQTN--VVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRI 607

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             NLR+C+DCH   K +S+  N EI++RD  RFH FKDG CSC DYW
Sbjct: 608 SNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 129/289 (44%), Gaps = 11/289 (3%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P K TF   + +C    + S G   H  +   GL  D Y+   LI+ Y   G +D A KV
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-YTFQSITSACA----G 247
           FD   E+++  WN +  A       +  L L+ +M  +  P   +T+  +  AC      
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELS 191

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           +  L  G   HA+ILR   H     V V  +L+D+Y + G +  A  VF +MP +++ SW
Sbjct: 192 ICPLRKGKEIHAHILR---HGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSW 248

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFS-PNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +++I  +A +     AL+ F  +++E   + PN IT V VL AC     +  G+      
Sbjct: 249 SAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGK-LVHAY 307

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +    +   L     L+ +  R G I     +   M  K D + W SL+
Sbjct: 308 VLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVISWNSLI 355


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 277/447 (61%), Gaps = 5/447 (1%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           DV   N+++  Y  CG L+ A +VF  M ER LVSW+ MIDA V+ GEF  AL++F +M 
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207

Query: 229 I-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
              F+PD     S+   CA L  L  G W H ++          +V++  +L+DMYCKCG
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCG 267

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ A  VF+ +   D+  WN++I G A++G  + AL+ F R++ ++ F PN  TFV  L
Sbjct: 268 CMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRML-DKGFVPNESTFVVAL 326

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
            AC H G V EG D F  M  ++ I P  EHYGCL DLL RAG ++EA  ++ +MPM+P 
Sbjct: 327 CACIHTGRVDEGEDVFRSM-RDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPH 385

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           A  W +L+ +C   H +V + E V K++IE E     G YV L  +YA    W D   +R
Sbjct: 386 ASQWGALMSSCLM-HNNVGVGERVGKKLIELEPDD-GGRYVALFNLYAVNGLWEDAKALR 443

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           K+M ++G  KE G S IE +G+ HEF +GDT HPQT+ IY  L+ ++++L+  GY  D S
Sbjct: 444 KMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTS 503

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           Q  +  + ++ K ++L  HSERLA+A GILN+   MPIR+ KNLRVC+DCH   KL+S++
Sbjct: 504 QVLLDMDNEEDKGNTLSYHSERLALAFGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKL 563

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +  EIIVRDR RFH F+DG CSC D+W
Sbjct: 564 YQREIIVRDRHRFHLFRDGVCSCNDFW 590



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 12/261 (4%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL+ A  VF ++      +W+ +I AC R+ +   +A+ +F +M   G   PD  
Sbjct: 159 YGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFS-EALRVFDQMTGNG-FKPDAV 216

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKR---GLVSDVYINNSLIHFYASCGHLDLANKVF 193
                LK CA+L A  +G+  H  +      G   +V +  +L+  Y  CG ++ A  VF
Sbjct: 217 VLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVF 276

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D +    +V WN MI      G    AL+LFRRM    F P+  TF     AC     + 
Sbjct: 277 DGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVD 336

Query: 253 LGMWAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSI 310
            G      + R   DH +         L D+  + G L+ A  V   MP     S W ++
Sbjct: 337 EG----EDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGAL 392

Query: 311 ILGFALHGRAEAALKYFDRLV 331
           +    +H       +   +L+
Sbjct: 393 MSSCLMHNNVGVGERVGKKLI 413



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
           G     + + C      +LGM   A  +     +   DV+  N+++  Y KCG L+ AR+
Sbjct: 111 GALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAARE 170

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           VF  MP+R L SW+++I      G    AL+ FD++     F P+++  V VL  C H G
Sbjct: 171 VFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQM-TGNGFKPDAVVLVSVLKTCAHLG 229

Query: 355 MVSEGRDYFDVMINE-YNITP---VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
            +  GR     +  E     P   +LE    LVD+  + G ++EA  +   +    D V+
Sbjct: 230 ALERGRWVHRFLKAERLGGRPGNVMLET--ALVDMYCKCGCMNEAWWVFDGV-QSHDVVL 286

Query: 411 WRSLL 415
           W +++
Sbjct: 287 WNAMI 291


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/499 (40%), Positives = 291/499 (58%), Gaps = 9/499 (1%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+ LF  +I +     D+ T   A KAC  L    QGKQ HAH  K G  SD+++N+ +
Sbjct: 13  KALELFS-LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           +  Y  CG +  A  VF+ +     V+W  MI   V  G  D AL+++ RM Q    PD 
Sbjct: 72  LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 131

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           YTF ++  A + +  L  G   HA +++      V+D  V  SL+DMY KCG+++ A ++
Sbjct: 132 YTFATLIKASSCVTALEQGRQLHANVIKL---DCVSDPFVGTSLVDMYAKCGNIEDAYRL 188

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+ M  R++  WN++++G A HG AE A+  F + +      P+ ++F+G+LSAC+H G+
Sbjct: 189 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLF-KSMKSHGIEPDRVSFIGILSACSHAGL 247

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            SE  +Y   M N+Y I P +EHY CLVD L RAG + EA  ++  MP K  A I R+LL
Sbjct: 248 TSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALL 307

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            AC +    V   + VA ++   E    S  YVLLS +YA+A RW+DV   RK+M  K V
Sbjct: 308 GAC-RIQGDVEXGKRVAARLFALEP-FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNV 365

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            K+PG S I++  + H F   D SHPQ   IY  ++ + + ++  GY PD ++  ++D  
Sbjct: 366 KKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPD-TEFVLLDVE 424

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           D+ K+ SL  HSE+LAIA G+++      IRV KNLRVC DCH   K IS++F  EI++R
Sbjct: 425 DEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLR 484

Query: 596 DRARFHHFKDGSCSCMDYW 614
           D  RFHHF+DG CSC DYW
Sbjct: 485 DANRFHHFRDGVCSCGDYW 503



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           ++L+ + +   ++ Q +Q+HA  ++  L       +  S +  +A   +++ A+R+F ++
Sbjct: 135 ATLIKASSCVTALEQGRQLHANVIK--LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM 192

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N   WN ++   A+  +A+ +A+ LF+ M   G + PD+ +F   L AC++    S+
Sbjct: 193 NVRNIALWNAMLVGLAQHGNAE-EAVNLFKSMKSHG-IEPDRVSFIGILSACSHAGLTSE 250

Query: 154 GKQ-AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             +  H+     G+  ++   + L+      G +  A+KV + M  ++  S N
Sbjct: 251 AYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 303


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/619 (35%), Positives = 334/619 (53%), Gaps = 42/619 (6%)

Query: 28  GSFNNHSSLLSSL-TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           G   + +SL S +   C+++  L+Q+HA A  +       T    + ++ +A   DL  A
Sbjct: 39  GVLWSDASLFSHIFRACRAIPLLRQLHAFAATSGAAADRFT--TNNLLLAYADLGDLPTA 96

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM--------------------- 125
             +F  I   N  +WN LI  C ++ D    A  LF +M                     
Sbjct: 97  RHLFEGISKRNVMSWNILIGGCIKNGDLG-SARELFDKMPTRNVATWNAMVAGLTNVGLD 155

Query: 126 ---------IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
                    + +  + PD+       + CA L     G+Q HA++ + G+ SD+ + NSL
Sbjct: 156 EDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSL 215

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDG 235
            H Y  CG L     V   +   ++VS+N  I    Q G+ + AL+ F  M+ +   PD 
Sbjct: 216 AHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDV 275

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            TF S  S C+ LA L+ G   HA +++     +V    V  SL+ MY +CG L  + +V
Sbjct: 276 VTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVP---VITSLVHMYSRCGCLGDSERV 332

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           ++     DL   +++I     HG+   A++ F +++      PN +TF+ +L AC+H G+
Sbjct: 333 YDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMM-NGGAEPNEVTFLALLYACSHSGL 391

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             EG ++F++M   Y   P ++HY C+VDLL R+G +DEA  L+ +MP++ D VIW++LL
Sbjct: 392 KDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLL 451

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            AC K   +  ++E +A++VIES+    S  YVLLS + A+++RW DV  VRK+M +K +
Sbjct: 452 SAC-KTQKNFDMAERIAERVIESDPRD-SAPYVLLSNIRATSKRWGDVTEVRKIMREKDI 509

Query: 476 TKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDEL 535
            KEPG S +E  G  H+F  GD SHP+  +I  +L  +  K++  GY PD +     D  
Sbjct: 510 RKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMV-FHDME 568

Query: 536 DDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
           D+ K+ SL  HSE+LAIA   LNL  G+PIRV KNLRVC DCH   KLIS++   EI+VR
Sbjct: 569 DEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVR 628

Query: 596 DRARFHHFKDGSCSCMDYW 614
           D +RFHHF+DG CSC DYW
Sbjct: 629 DVSRFHHFRDGRCSCGDYW 647



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 40/300 (13%)

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +G +  D   F    +AC    A    +Q HA     G  +D +  N+L+  YA  G L 
Sbjct: 38  RGVLWSDASLFSHIFRACR---AIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLP 94

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----------------- 230
            A  +F+ + +R+++SWN++I   ++ G+  SA +LF +M                    
Sbjct: 95  TARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGL 154

Query: 231 ---------------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
                            PD +   S+   CAGL  +  G   HAY++R     + +D+ V
Sbjct: 155 DEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVR---SGMDSDMCV 211

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            NSL  MY +CG L     V  ++P   + S+N+ I G   +G +E AL+YF  +   E 
Sbjct: 212 GNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVE- 270

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            +P+ +TFV  +S C+    +++G+     +I +  +  V+     LV + +R G + ++
Sbjct: 271 VAPDVVTFVSAISCCSDLAALAQGQQVHAQVI-KAGVDKVVPVITSLVHMYSRCGCLGDS 329


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 339/601 (56%), Gaps = 20/601 (3%)

Query: 21  FNNNRNEGSF-----NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII 75
           F +N  EGS+       +++LL   T  K ++Q + +H   +++    +H  ++  + + 
Sbjct: 37  FPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIF--RHDLVMNNTLLN 94

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    L+ A +VF ++   +  TW TLI   ++  D    A+VLF +M+  G   P++
Sbjct: 95  MYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQH-DRPFDALVLFNQMLRFG-FSPNE 152

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    +KA A       G Q H    K G  S+V++ ++L+  Y   G +D A  VFD 
Sbjct: 153 FTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA 212

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLG 254
           +  R+ VSWN +I    +    + AL+LF+ M +  F P  +++ S+  AC+    L  G
Sbjct: 213 LESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG 272

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
            W HAY+++  +  LV      N+L+DMY K GS+  AR++F+ + KRD+ SWNS++  +
Sbjct: 273 KWVHAYMIKSGE-KLVA--FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY 329

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HG    A+ +F+ +       PN I+F+ VL+AC+H G++ EG  Y+++M  +  I  
Sbjct: 330 AQHGFGNEAVCWFEEMR-RGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVL 387

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
              HY  +VDLL RAG+++ AL  +  MP++P A IW++LL+AC + H +  L    A+ 
Sbjct: 388 EAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC-RMHKNTELGAYAAEH 446

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           V E +     G +V+L  +YAS  RWND   VRK M + GV KEP CS +EI+   H F 
Sbjct: 447 VFELDPDD-PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFV 505

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIA 553
           A D  HPQ ++I    + +  K+K  GY PD S   + VD+ +  ++ +L+ HSE++A+A
Sbjct: 506 ANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE--REVNLQYHSEKIALA 563

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
             +LN  PG  I + KN+RVC DCH   KL S+    EIIVRD  RFHHFKDG+CSC DY
Sbjct: 564 FALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDY 623

Query: 614 W 614
           W
Sbjct: 624 W 624


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 328/620 (52%), Gaps = 47/620 (7%)

Query: 32  NHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N S  L  L  C   +S S   ++H+Q ++    +   +LL  + +  +     +  A +
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKS--SLLSNTLLDVYGKCGLIPQALQ 59

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++ N +  +W +++ A  +++  + + + +   M     + PD   F   ++AC+ L
Sbjct: 60  LFDEMPNRDHVSWASILTAHNKALIPR-RTLSMLNTMFTHDGLQPDHFVFACIVRACSSL 118

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GKQ HA         D  + +SLI  Y  CG  D A  VFD++L ++ VSW  MI
Sbjct: 119 GYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMI 178

Query: 209 DAFVQFGEFDSALKLFRRMQI------------------------LFEP---------DG 235
             + + G    A+ LF +  +                        LF           D 
Sbjct: 179 SGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDP 238

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
               S+   CA LA L LG   H  ++     S +    ++N+L+DMY KC  +  A+ +
Sbjct: 239 LVLSSVVGGCANLALLELGKQIHGLVIALGFESCL---FISNALVDMYAKCSDILAAKDI 295

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F  MP++D+ SW SII+G A HG+AE AL  +D +V+     PN +TFVG+L AC+H G+
Sbjct: 296 FYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSR-IKPNEVTFVGLLYACSHAGL 354

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           VS GR+ F  M  +Y+I P L+HY CL+DLL+R+G++DEA +L+  +P KPD   W SLL
Sbjct: 355 VSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLL 414

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            A C +H ++ +   +A +V++ +    S  Y+LLS VYA A  W  V  VRKLM+   V
Sbjct: 415 SA-CMRHNNLEMGVRIADRVLDLKPEDPS-TYILLSNVYAGAEMWGSVSKVRKLMSSMEV 472

Query: 476 TKEPGCSSIEIDGIAHEFFAGDT-SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
            KEPG SSI+    +  F AG++  HP   +I   L  +D +++ RGY P+ S   + D 
Sbjct: 473 RKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTS-FVLYDI 531

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
               K+  L  HSERLA+A G+L   PG  IR+ KNLR+C DCH V K IS I   EI+V
Sbjct: 532 EQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMV 591

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RD  R+HHFK+G CSC D+W
Sbjct: 592 RDATRYHHFKEGKCSCNDFW 611


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/599 (36%), Positives = 324/599 (54%), Gaps = 46/599 (7%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           + A+ L   +P++ + L   + I  +    DL+ A  VF  +       WN +I      
Sbjct: 209 VSARKLFDEMPKRDE-LTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH- 266

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD-- 169
                +A+ L ++M   G +  D  T+   + ACA + +F  GKQ HA+I K  L  +  
Sbjct: 267 CGCFQEALTLCRKMRFLG-IQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHS 325

Query: 170 --VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN---------------------- 205
             + ++N+LI  Y     +D A K+F  M  R++++WN                      
Sbjct: 326 FCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEM 385

Query: 206 ---------VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGM 255
                    VMI    Q G  D  LKLF++M++  FEP  + F    +AC+ L  L  G 
Sbjct: 386 PVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGR 445

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA ++ H  +   + + V N++I MY KCG ++ A  VF +MP  DL SWNS+I    
Sbjct: 446 QLHAQLV-HLGYE--SSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALG 502

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG    A++ FD+++ E  F P+ ITF+ VL+AC+H G+V +GR YF+ M+  Y ITP 
Sbjct: 503 QHGHGVKAIELFDQMLKEGVF-PDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPC 561

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            +HY  +VDL  RAG    A  ++ +MP KP A +W +LL A C+ H ++ L  E A+Q+
Sbjct: 562 EDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALL-AGCRIHGNMDLGIEAAEQL 620

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
            +       G YVLLS +YA   RWN+V  VRKLM D+ V KEP CS IE++   H F  
Sbjct: 621 FKLMPQ-NDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMV 679

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D  HP+   +Y +L+ +  ++K  GY PD ++  + D   + K+ +L  HSE+LA+  G
Sbjct: 680 DDDVHPEVLSVYRYLEQLGLEMKKLGYIPD-TKFVLHDMEYEQKEHALSTHSEKLAVGFG 738

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I+ L PG  +RVFKN+R+C DCH   K +S++   EIIVRDR RFHHFK+G CSC DYW
Sbjct: 739 IMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 56/298 (18%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           D     +LI  Y + G+L+L  ++F+   +  R  V +N MI  +   G+  SAL+LFR 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGM-----WAHAYILRHCDHSLVTDVLVNNSLI 280
           M+   F PD +TF S+ SA      L +G        H  +++     + + VL  N+L+
Sbjct: 138 MRRDDFRPDDFTFTSVLSAL----VLFVGNEQQCGQMHCAVVKTGMGCVSSSVL--NALL 191

Query: 281 DMYCK--------CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            +Y K        C ++  AR++F+ MPKRD  +W ++I G+  +     A + F+ +V 
Sbjct: 192 SVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 333 EESFSPNS------------------------------ITFVGVLSACNHRGMVSEGRD- 361
               + N+                              IT+  ++SAC + G    G+  
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV 311

Query: 362 YFDVMINEYNI--TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +  ++ NE N   +  L     L+ L  +   +DEA  +   MP++ + + W ++L  
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG 368



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 34/106 (32%)

Query: 277 NSLIDMYCKCGSLDIARQVFESMPK---------------------------------RD 303
           N L++MYCK  +L  ARQ+FE +P                                  RD
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
              +N++I G+A +G   +AL+ F R +  + F P+  TF  VLSA
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELF-RAMRRDDFRPDDFTFTSVLSA 156


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/518 (39%), Positives = 303/518 (58%), Gaps = 44/518 (8%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA- 189
           +LPD   F   L+AC          + H  I + G  ++  I  SLI  Y +C  L+LA 
Sbjct: 7   ILPDHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAY 66

Query: 190 --------------------------------NKVFDNMLERSLVSWNVMIDAFVQFGEF 217
                                            KVF  M +R +V+WN MI  +V+ G+F
Sbjct: 67  QVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKF 126

Query: 218 DSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           + AL+ F+ M     EPD +TF S+ +ACA L  L+   W H  +++     +  + +++
Sbjct: 127 EEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQK---RIEVNFILS 183

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           ++LIDMY KCG ++ A++VFES+ + D++ WNS+I G A+HG A  A+  F ++  E   
Sbjct: 184 SALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVL 243

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+S+TF+G+L AC+H G+V EGR YFD+M N Y+I P LEHYG +VDLL RAG +DEA 
Sbjct: 244 -PDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAY 302

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
            +++ MPM+PD ++WR LL A C+ H +  L E     +     G  SG YVLLS +Y S
Sbjct: 303 AMITAMPMEPDVIVWRILLSA-CRTHRNTELGEVAVANI----SGPKSGDYVLLSNIYCS 357

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
             RW++   VR++M ++GV K  G S  E + + H F AGD SHP+T+ +Y  L+ + ++
Sbjct: 358 QNRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQR 417

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
            K  G+ P  ++  M+D  ++ K+ +L  HSE+LA+A GIL   PG  IR++KNLR+C D
Sbjct: 418 TKLEGFVPS-TELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYD 476

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH   K++S + +  II+RDR RFH F+ GSCSC DYW
Sbjct: 477 CHNWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +SL+S+   C  ++   Q+  Q     +      L+I S    F    + + A +VF ++
Sbjct: 50  ASLISTYVNCNQLNLAYQVIRQVFSWTVSLAGLNLVIDS----FMRIGEYEIAKKVFCKM 105

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  TWN++I    R+   + +A+  FQ M+   NV PDK TF   + ACA L A + 
Sbjct: 106 PDRDVVTWNSMIGGYVRNGKFE-EALRSFQAML-SSNVEPDKFTFASVITACARLGALNH 163

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            +  H  + ++ +  +  ++++LI  Y+ CG ++ A +VF+++    +  WN +I+    
Sbjct: 164 AQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAV 223

Query: 214 FGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            G    A+ +F +M+   +L  PD  TF  I  AC+    +  G     + L    +S+ 
Sbjct: 224 HGLALDAMMVFSKMEAENVL--PDSLTFLGILKACSHCGLVKEG--RKYFDLMENYYSIK 279

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
             +    +++D+  + G LD A  +  +MP + D+  W  ++     H   E
Sbjct: 280 PQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTE 331


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 324/602 (53%), Gaps = 52/602 (8%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIEN----PNSFTWNTLIRAC 108
           A+++   +P  H+T++ +S +I   AS  D + A+ +  ++ +    PN  TWN L+   
Sbjct: 74  ARSVLDGMP--HRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGL 131

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
            RS  A+  A++   RM  +G  LPD      AL A   +   + G+Q H ++ K G   
Sbjct: 132 NRSGRAR-DAVLALVRMHGEG-FLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRL 189

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNM-------------------------------- 196
           D  +  +LI  Y  CG  D   +VFD                                  
Sbjct: 190 DACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFV 249

Query: 197 ---LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
              +E ++VSW  ++   VQ G    A+ LFR MQ    EP+  T   +  A A +A L 
Sbjct: 250 GRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALM 309

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G  AH + LR   H    D+ V ++L+DMY KCG +  AR +FE+MP R++ SWN++I 
Sbjct: 310 HGRSAHCFSLRKGFHH---DIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIG 366

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A+HG AE A++ F R +      P+ +TF  VL AC+  G   EGR YF+ M +++ I
Sbjct: 367 GYAMHGEAENAVRLF-RSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGI 425

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           +P +EHY C+V LL RAG +D+A  +++ MP +PD  IW SLL +C + H +VVL+E  A
Sbjct: 426 SPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSC-RVHGNVVLAEVAA 484

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           + + + E    +G YVLLS +YAS + W+ V  +R +M   G+ KE GCS IEI    H 
Sbjct: 485 ENLFQLEPEN-AGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHM 543

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
             AGD+SHP    I   L  +  +++  G+ P  +   + D  +  K   L +HSE+LA+
Sbjct: 544 LLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPS-TDYVLHDVEEQEKDDILSVHSEKLAV 602

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           ALG+++   G P++V KNLR+C DCHE  K IS     EI VRD  RFHHFKDG CSC D
Sbjct: 603 ALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCAD 662

Query: 613 YW 614
           YW
Sbjct: 663 YW 664



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 133/353 (37%), Gaps = 78/353 (22%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD    P ALK+C+ L        A A     G+  D ++ +SL+H Y   G    A  V
Sbjct: 21  PDPRLLPSALKSCSALRLARALHAAAA---VAGVSRDAFVASSLLHAYLRFGATADARSV 77

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ------------------------ 228
            D M  R++V W+ +I A    G+ + A  L  RM+                        
Sbjct: 78  LDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRA 137

Query: 229 ---IL---------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
              +L         F PD        SA   +  +++G   H Y+++        D  V 
Sbjct: 138 RDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK---AGCRLDACVA 194

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            +LIDMY KCG  D   +VF+     D+ S N+++ G + + +   AL+ F R  V    
Sbjct: 195 TALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLF-REFVGRGI 253

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVM------INEYNITPVLEHYG---------- 380
             N +++  +++ C   G   E  D F  M       N   I  VL  +           
Sbjct: 254 ELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRS 313

Query: 381 ------------------CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                              LVD+ A+ G + +A  +   MP + + V W +++
Sbjct: 314 AHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR-NVVSWNAMI 365


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/630 (35%), Positives = 337/630 (53%), Gaps = 44/630 (6%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRT--ALPQQHKTLLIYSRIIH 76
           S+F      G   N  +++  ++ C  +  L Q+  Q       L  +   L++ + +  
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGVISACAKLQDL-QLGEQVCTCIGELELEVNALMVNALVDM 284

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     +D A ++F +  + N   +NT++    R   A+ + + +   M++ G   PD+ 
Sbjct: 285 YMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAR-EVLAVLGEMLKHGP-RPDRI 342

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T   A+ AC+ L   S GK  H ++ + GL     + N++I+ Y  CG  ++A +VFD M
Sbjct: 343 TMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM 402

Query: 197 LERS-------------------------------LVSWNVMIDAFVQFGEFDSALKLFR 225
           L ++                               LVSWN MI A VQ   F  A++LFR
Sbjct: 403 LNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFR 462

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            MQ      D  T   + SAC  L  L L  W H YI +   H    D+ +  +L+DM+ 
Sbjct: 463 VMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIH---FDMHLGTALVDMFA 519

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           +CG    A QVF  M KRD+++W + I   A+ G    A++ FD ++ ++   P+ + FV
Sbjct: 520 RCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEML-QQGIKPDGVVFV 578

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +L+A +H G+V +G   F  M + Y I P   HYGC+VDLL RAG + EAL L+++M M
Sbjct: 579 ALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQM 638

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +P+ VIW SLL A C+ H +V ++   A+++ E +    +G++VLLS +YASA RW+DV 
Sbjct: 639 EPNDVIWGSLL-AACRVHKNVDIAAYAAERISELDPER-TGIHVLLSNIYASAGRWDDVA 696

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            VR  + +KG  K PG SSIEI+G   EF  GD SHP+   I   L  I  +L+  GY P
Sbjct: 697 KVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVP 756

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           D +   ++D  +  K+  L  HSE+LAIA  +++   GMPIRV KNLR+C DCH   KL+
Sbjct: 757 DLTNV-LLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLV 815

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S+ ++ EIIVRD  RFH F+ G CSC DYW
Sbjct: 816 SKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 223/473 (47%), Gaps = 70/473 (14%)

Query: 10  PPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           P TP   S ++ N N  +    + SS   S  +CK+M++LKQ+H+Q  +  L     +L 
Sbjct: 12  PATPT--SVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLT 69

Query: 70  -IYSRIIHFASFADLDYAFRVFYQIENPNS-----FTWNTLIR---ACARSVDAKPQAIV 120
            + S      +F  L+YA +        N      + +++LIR   AC        +AIV
Sbjct: 70  NLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGY----KAIV 125

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           +F++++  G V PD  TFPF L AC    A ++G Q H  I K G   D+++ NSLIHFY
Sbjct: 126 VFRQLMCMGAV-PDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFY 184

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQ 239
             CG +D   +VFD M ER++VSW  +I  + + G +  A+ LF  M ++   P+  T  
Sbjct: 185 GECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMV 244

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
            + SACA L  L LG      I    +  L  + L+ N+L+DMY KCG++D AR++F+  
Sbjct: 245 GVISACAKLQDLQLGEQVCTCI---GELELEVNALMVNALVDMYMKCGAIDKARKIFDEC 301

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS-- 357
             ++L  +N+I+  +   G A   L     + ++    P+ IT +  +SAC+    VS  
Sbjct: 302 VDKNLVLYNTIMSNYVRQGLAREVLAVLGEM-LKHGPRPDRITMLSAVSACSELDDVSCG 360

Query: 358 ------------EGRD---------------------YFDVMINEYNITPVLEHYGCLVD 384
                       EG D                      FD M+N+  ++     +  L+ 
Sbjct: 361 KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVS-----WNSLIA 415

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
              R G+++ A  + S MP   D V W +++ A        ++ E + K+ IE
Sbjct: 416 GFVRNGDMESAWKIFSAMP-DSDLVSWNTMIGA--------LVQESMFKEAIE 459


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/617 (35%), Positives = 335/617 (54%), Gaps = 47/617 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L + ++ K +   K IH  A++  + +     +  + +  +A+   +  A  VF  +
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVED--VFVCTALVNLYANCLCVREAQTVFDLM 404

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + N  TWN+L  +C  +     + + +F+ M+  G V PD  T    L AC+ L     
Sbjct: 405 PHRNVVTWNSL-SSCYVNCGFPQKGLNVFREMVLNG-VKPDLVTMLSILHACSDLQDLKS 462

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN-------- 205
           GK  H    + G+V DV++ N+L+  YA C  +  A  VFD +  R + SWN        
Sbjct: 463 GKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFT 522

Query: 206 ---------------------------VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYT 237
                                      V+I   V+    + A+++FR+MQ + F+PD  T
Sbjct: 523 NKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETT 582

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             SI  AC+    L +G   H Y+ RH       D+   N+L+DMY KCG L ++R VF+
Sbjct: 583 IYSILRACSLSECLRMGKEIHCYVFRHWKD---WDLARTNALVDMYAKCGGLSLSRNVFD 639

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            MP +D+ SWN++I    +HG  + AL  F+++++     P+S TF  VLSAC+H  +V 
Sbjct: 640 MMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLS-MVKPDSATFTCVLSACSHSMLVE 698

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           EG   F+ M  ++ + P  EHY C+VD+ +RAG ++EA   +  MPM+P A+ W++ L A
Sbjct: 699 EGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFL-A 757

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
            C+ + +V L++  AK++ E +    S  YV L  +  +A+ W++   +RKLM ++G+TK
Sbjct: 758 GCRVYKNVELAKISAKKLFEIDPN-GSANYVTLFNILVTAKLWSEASKIRKLMKERGITK 816

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
            PGCS   +    H F AGD S+ ++ +IY FLD +  K+K+ GY PD +   + D   +
Sbjct: 817 TPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPD-TDYVLHDIDQE 875

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K  SL  HSE+LA+A GILNL     IRVFKNLR+C DCH   K +S +  V I+VRD 
Sbjct: 876 EKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDS 935

Query: 598 ARFHHFKDGSCSCMDYW 614
            RFHHFK+G+CSC D+W
Sbjct: 936 LRFHHFKNGNCSCKDFW 952



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 163/329 (49%), Gaps = 11/329 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQ 92
           SS+L   ++ + +   K+IH   +R  + +    + + S  ++F A    +  A  VF  
Sbjct: 145 SSILPGCSDLQDLKSGKEIHGFVVRHGMVED---VFVSSAFVNFYAKCLCVREAQTVFDL 201

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           + + +  TWN+L  +C  +     + + +F+ M+  G V PD  T    L AC+ L    
Sbjct: 202 MPHRDVVTWNSL-SSCYVNCGFPQKGLNVFREMVLDG-VKPDPVTVSCILSACSDLQDLK 259

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            GK  H    K G+V +V+++N+L++ Y SC  +  A  VFD M  R++++WN +   +V
Sbjct: 260 SGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYV 319

Query: 213 QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G     L +FR M +   +PD     SI  AC+ L  L  G   H + ++   H +V 
Sbjct: 320 NCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK---HGMVE 376

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V  +L+++Y  C  +  A+ VF+ MP R++ +WNS+   +   G  +  L  F  +V
Sbjct: 377 DVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMV 436

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +     P+ +T + +L AC+    +  G+
Sbjct: 437 L-NGVKPDLVTMLSILHACSDLQDLKSGK 464



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 194/454 (42%), Gaps = 57/454 (12%)

Query: 8   GGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQ 64
           G P      +  I+ ++R  G   +    ++    C   +   ++KQ H  A R  +   
Sbjct: 15  GIPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSD 74

Query: 65  HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
              + I +  IH +     ++ A RVF  +   +  TWN+L  AC  +     Q + +F+
Sbjct: 75  ---VSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSL-SACYVNCGFPQQGLNVFR 130

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
           +M     V  +  T    L  C+ L     GK+ H  + + G+V DV+++++ ++FYA C
Sbjct: 131 KM-GLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKC 189

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSIT 242
             +  A  VFD M  R +V+WN +   +V  G     L +FR M +   +PD  T   I 
Sbjct: 190 LCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCIL 249

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           SAC+ L  L  G   H + L+H    +V +V V+N+L+++Y  C  +  A+ VF+ MP R
Sbjct: 250 SACSDLQDLKSGKAIHGFALKH---GMVENVFVSNALVNLYESCLCVREAQAVFDLMPHR 306

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH---------- 352
           ++ +WNS+   +   G  +  L  F  + +     P+ +    +L AC+           
Sbjct: 307 NVITWNSLASCYVNCGFPQKGLNVFREMGLN-GVKPDPMAMSSILPACSQLKDLKSGKTI 365

Query: 353 ------RGMVS-------------------EGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
                  GMV                    E +  FD+M +   +T     +  L     
Sbjct: 366 HGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVT-----WNSLSSCYV 420

Query: 388 RAGNIDEALHLVSNMPM---KPDAVIWRSLLDAC 418
             G   + L++   M +   KPD V   S+L AC
Sbjct: 421 NCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC 454


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 338/617 (54%), Gaps = 44/617 (7%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQA-LRTALPQQHKTLLIYSRIIHFASFADLDYAFR-V 89
           N  +++ +++ C  +  L+       L T L  +  TL++ + +  +    D+ YA R +
Sbjct: 222 NPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM-YAVREI 280

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F +  + N   +NT++    +   A  + +V+   M+++G   PDK T    + ACA L 
Sbjct: 281 FDEFSDKNLVMYNTIMSNYVQHGLA-GEVLVVLDEMLQKGQ-RPDKVTMLSTIAACAQLG 338

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG------------------------- 184
             S GK +HA++F+ GL     I+N++I  Y  CG                         
Sbjct: 339 DLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIA 398

Query: 185 ------HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYT 237
                  L+LA ++F  M E +LVSWN MI A VQ   F+ A+ L R MQ    + D  T
Sbjct: 399 GLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVT 458

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
              I SAC  L  L L  W + YI ++  H    D+ +  +L+DM+ +CG    A +VFE
Sbjct: 459 MVGIASACGYLGALDLAKWIYTYIEKNDIH---IDMQLGTALVDMFSRCGDPLNAMRVFE 515

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
           +M KRD+++W + I   A+ G A+ A++ FD ++ ++    +   FV +L+A +H G V 
Sbjct: 516 NMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEML-KQDVKADDFVFVALLTAFSHGGYVD 574

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +GR  F  M   + ++P + HYGC+VDLL RAG ++EA  L+ +MP+KP+ VIW S L A
Sbjct: 575 QGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFL-A 633

Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
            C+KH +V  +   A + I        G++VLLS +YASA +WNDV  VR  M +KG  K
Sbjct: 634 ACRKHKNVEFAN-YADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQK 692

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
             G SSIE+ G+  EF +GD SH +  QI   L  I+ ++   GY PD +   +VD  + 
Sbjct: 693 VAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNV-LVDVDEQ 751

Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
            K+  L  HSE+LA+A G++N   G+PIRV KNLR+C DCH   KL+S+++  EI VRD 
Sbjct: 752 EKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDN 811

Query: 598 ARFHHFKDGSCSCMDYW 614
            R+H FK+G CSC D+W
Sbjct: 812 NRYHFFKEGFCSCRDFW 828



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 208/418 (49%), Gaps = 52/418 (12%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPN 97
           SSL  CK++ +LKQ+H   L+  +   +K   + +  +   +   L+YA   F + E   
Sbjct: 27  SSLQTCKTLIELKQLHCNMLKKGVFNINK---LIAACVQMGTHESLNYALNAFKEDEGTK 83

Query: 98  S--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
              +T NTLIR  A S   K +AI ++  MI    ++PD  TFPF L AC+ + AFS+G 
Sbjct: 84  CSLYTCNTLIRGYAASGLCK-EAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGV 142

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H  + K GLV D+++ NSLIHFYA+CG +DL  KVFD MLER++VSW  +I+ +    
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVN 202

Query: 216 EFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
               A+ LF  M ++  EP+  T     SACA L  L LG      +    +  + ++ L
Sbjct: 203 MAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLM---TELGVKSNTL 259

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V N+L+DMY KCG +   R++F+    ++L  +N+I+  +  HG A   L   D + +++
Sbjct: 260 VVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEM-LQK 318

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRD--------------------------------- 361
              P+ +T +  ++AC   G +S G+                                  
Sbjct: 319 GQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAA 378

Query: 362 --YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              FD M N+  +T     +  L+  L R G ++ AL +   MP + + V W +++ A
Sbjct: 379 CKVFDSMSNKTVVT-----WNSLIAGLVRDGELELALRIFGEMP-ESNLVSWNTMIGA 430


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 299/538 (55%), Gaps = 44/538 (8%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           WN +I    R+ +   +AI LF  M+ +  + P+  T    L AC    +F   +  H+ 
Sbjct: 357 WNAMIAGYVRN-EFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSC 415

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           + K G   D Y+ N+L+  Y+  G +++A  +F +M  + +VSWN MI  +V  G  D A
Sbjct: 416 VVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDA 475

Query: 221 LKLFRRMQ-------------------ILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           L L   MQ                      +P+  T  ++   CA LA L  G   HAY 
Sbjct: 476 LNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYA 535

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++     L  DV V ++L+DMY KCG L+++R VFE M  R++ +WN +I+ + +HG+ E
Sbjct: 536 VKQM---LSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGE 592

Query: 322 AALKYFDRLVVE----ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
            ALK F R+V E        PN +T++ + ++ +H GMV EG + F  M  ++ I P  +
Sbjct: 593 EALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSD 652

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWRSLLDACCKKHASVVLSEEVAKQVI 436
           HY CLVDLL R+G I+EA +L+  MP     V  W SLL AC K H ++ + E  AK + 
Sbjct: 653 HYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGAC-KIHQNLEIGEIAAKNL- 710

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
                     +VL   V     + + +G   + M +KGV KEPGCS IE     H+F AG
Sbjct: 711 ----------FVLDPNVLDYGTKQSMLG---RKMKEKGVRKEPGCSWIEHGDEVHKFLAG 757

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           D SHPQ+K+++ +L+ +  ++K  GY PD S   + +  ++ K++ L  HSERLAIA G+
Sbjct: 758 DVSHPQSKEVHEYLETLSLRMKKEGYVPDTS-CVLHNVGEEEKETMLCGHSERLAIAFGL 816

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LN  PG  IRV KNLRVC DCH  TK IS+I + EII+RD  RFHHF++G+CSC DYW
Sbjct: 817 LNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 145/265 (54%), Gaps = 12/265 (4%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           W + +R+  +S     QAI  +  M+  G V PD   FP  LKA A +   + GKQ HAH
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAG-VPPDNFAFPAVLKATAGIQDLNLGKQLHAH 110

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           +FK G      + NSL++ Y  CG +D A +VFD +  R  VSWN MI+A  +F E++ A
Sbjct: 111 VFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELA 170

Query: 221 LKLFRRMQILFE---PDGYTFQSITSACAGLAT-LSLGMWAHAYILRHCDHSLVTDVLVN 276
           + LFR M  L E   P  +T  S+  AC+ L   L LG   HA++LR+ D    T    N
Sbjct: 171 VHLFRLM--LLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFT----N 224

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N+L+ MY K G +  A+ +F+    +DL SWN+II   + + R E AL Y   ++++   
Sbjct: 225 NALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYL-HVMLQSGV 283

Query: 337 SPNSITFVGVLSACNHRGMVSEGRD 361
            PN +T   VL AC+H  M+  G++
Sbjct: 284 RPNGVTLASVLPACSHLEMLGCGKE 308



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 191/398 (47%), Gaps = 25/398 (6%)

Query: 35  SLLSSLTECKSMSQLKQIHA------QALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++L +    + ++  KQ+HA      QAL TA+P         S +  +    D+D A R
Sbjct: 90  AVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPN--------SLVNMYGKCGDIDAARR 141

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF +I N +  +WN++I A  R  +    A+ LF+ M+ + NV P   T      AC+ L
Sbjct: 142 VFDEITNRDDVSWNSMINAACR-FEEWELAVHLFRLMLLE-NVGPTSFTLVSVAHACSNL 199

Query: 149 F-AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                 GKQ HA + + G     + NN+L+  YA  G +  A  +FD   ++ LVSWN +
Sbjct: 200 INGLLLGKQVHAFVLRNGDWR-TFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTI 258

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I +  Q   F+ AL     M Q    P+G T  S+  AC+ L  L  G   HA++L + D
Sbjct: 259 ISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNND 318

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L+ +  V  +L+DMYC C   +  R VF+ M +R +  WN++I G+  +     A++ 
Sbjct: 319 --LIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIEL 376

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +V E   SPNS+T   VL AC  R      ++     + ++           L+D+ 
Sbjct: 377 FVEMVFELGLSPNSVTLSSVLPACV-RCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMY 435

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDA--CCKKH 422
           +R G I+ A  +  +M  K D V W +++     C +H
Sbjct: 436 SRMGRIEIARSIFGSMNRK-DIVSWNTMITGYVVCGRH 472


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 331/606 (54%), Gaps = 54/606 (8%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE-----NPNSFTWNTLIR 106
           +A+AL   +P+  +T++ +S ++   A+  D + A+R+  ++       PN  TWN L+ 
Sbjct: 70  NARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVS 129

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
              RS  A+  A+V    M  +G + PD      AL A   +   S G+Q H +  K G 
Sbjct: 130 GLNRSGRAR-DAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGC 188

Query: 167 VSDVYINNSLIHFYASCG-------------HLDLAN----------------------K 191
            +D  +  +LI  Y  CG             H+D+A+                      +
Sbjct: 189 RADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKE 248

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
             D  +E ++VSW  ++   VQ G+   A++ FR MQ    EP+  T   +  A A +A 
Sbjct: 249 FVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAA 308

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G  AH + LR      + DV V+++L+DMY KCG +  AR +F++M  R++ SWN++
Sbjct: 309 LMHGRSAHCFALR---KGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAM 365

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+A++G A  A+  F  ++  +   P+ +TF  +L+AC   G+  EGR YF  M NEY
Sbjct: 366 IGGYAMYGEAVNAVWMFHSMLKCKQ-KPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEY 424

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            ++P +EHY C+V LL RAG +DEA  L+S+MP +PDA IW SLL + C+ H +V L+E 
Sbjct: 425 GVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGS-CRVHGNVDLAEV 483

Query: 431 VAKQV--IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
            A+++  +E E    +G YVLLS +YAS + W+ V  VR++M D G+ KE GCS IEI  
Sbjct: 484 AAEKLFHLEPEN---AGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKN 540

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             H   AGD SHP    I   ++ ++ +++  G+ P  +   + D  +  K   L +HSE
Sbjct: 541 KVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPS-TDFVLHDVEEQEKDDILAVHSE 599

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LA+ALG+++  PG  +RV KNLR+C DCHE  K IS     EI VRD  RFHHF  G C
Sbjct: 600 KLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKC 659

Query: 609 SCMDYW 614
           SC D+W
Sbjct: 660 SCGDFW 665



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 47/274 (17%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD H  P A K+C  L      +  HA     GL  D ++ +SL+H Y   G    A  +
Sbjct: 18  PDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 193 FDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRM----------------------- 227
           FD M   +R++V W+ ++ A    G+ + A +L   M                       
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 228 ---------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
                          + L  PD        SA   +  +S+G   H Y ++        D
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVK---AGCRAD 191

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V  +LIDMY KCG      +VF+     D+ S N++I G + + +   AL+ F    V
Sbjct: 192 ACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEF-V 250

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +     N +++  +++ C   G   E  ++F  M
Sbjct: 251 DRGVELNVVSWTSIVACCVQNGKDLEAVEFFREM 284


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/615 (35%), Positives = 324/615 (52%), Gaps = 41/615 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SSL+S L +C +++Q+KQIH   LR  L Q    L    R +         YA RV   +
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 94  ENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +  N F W  +IR  A  ++ K  +AI ++  M ++  + P   TF   LKAC  +   +
Sbjct: 110 QFRNPFLWTAVIRGYA--IEGKFDEAIAMYGCMRKE-EITPVSFTFSALLKACGTMKDLN 166

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q HA  F+      VY+ N++I  Y  C  +D A KVFD M ER ++SW  +I A+ 
Sbjct: 167 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYA 226

Query: 213 QFGEFDSALKLF--------------------------------RRMQILFEPDGYTFQS 240
           + G  + A +LF                                R  +     D  T   
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             SACA L        A   I +   +S    V++ ++LIDMY KCG+++ A  VF SM 
Sbjct: 287 YISACAQLGASKYADRA-VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN 345

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            +++ +++S+ILG A HGRA+ AL  F  +V +    PN++TFVG L AC+H G+V +GR
Sbjct: 346 NKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGR 405

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             FD M   + + P  +HY C+VDLL R G + EAL L+  M ++P   +W +LL A C+
Sbjct: 406 QVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGA-CR 464

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H +  ++E  A+ + E E  I  G Y+LLS VYASA  W  V  VRKL+ +KG+ K P 
Sbjct: 465 IHNNPEIAEIAAEHLFELEPDII-GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPA 523

Query: 481 CS-SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
            S  ++ +G  H+FF G+ +HP + +I   L+ + E+L   GY PD S     D  D+ K
Sbjct: 524 VSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVP-YDVSDNAK 582

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           +  L  H+E+LA+A  +L       I + KNLR+C DCH+  +L S +    II+RD  R
Sbjct: 583 RLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMR 642

Query: 600 FHHFKDGSCSCMDYW 614
           FHHF+ G CSC D+W
Sbjct: 643 FHHFRSGDCSCGDFW 657


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 319/570 (55%), Gaps = 45/570 (7%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
              + A   F ++ + +  +WN++I   ++      +A+ +F +M+ + ++ PD  T   
Sbjct: 222 GQFELAASQFEKMPDRDIVSWNSMISGYSQQ-GYNLEALAIFSKMLNEPSLKPDNFTLAS 280

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN---------- 190
            L ACA L   + GKQ HA+I +    +   + N+LI  YA  G +++A           
Sbjct: 281 ILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSN 340

Query: 191 -----------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
                                  ++F+ + +R +V+W  MI  +VQ G ++ AL+LFR M
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400

Query: 228 -QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                EP+ YT  ++ S  + L  L  G   HA  ++  + S  +   V N+LI MY K 
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS---VTNALIAMYAKT 457

Query: 287 GSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           G++++A++VF+ +P  K+++ SW S+I+  A HG  + A+  F+R++      P+ IT+V
Sbjct: 458 GNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML-SVGMKPDHITYV 515

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVLSAC H G+V +GR Y+++M   + I P L HY C++DL  RAG + EA   + +MP+
Sbjct: 516 GVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPI 575

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +PD + W SLL A CK H +  L++  A++++  + G  SG Y+ L+ VY++  +W +  
Sbjct: 576 EPDNIAWGSLL-ASCKIHKNADLAKVAAERLLLIDPG-NSGAYLALANVYSACGKWENAA 633

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
             RKLM D+GV KE G S I I    H F   D  HPQ  +IY  +  I E++K  G+ P
Sbjct: 634 QTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIP 693

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           D +++ + D  ++ K+  L+ HSE+LAIA G+LN      +R+ KNLRVC DCH   K I
Sbjct: 694 D-TESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFI 752

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S++   EIIVRD  RFHHFKDGSCSC DYW
Sbjct: 753 SKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 198/469 (42%), Gaps = 108/469 (23%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHF-ASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           + +H Q ++  L   H  + + + ++ F A    L +A  VF ++   ++F+WNTLI   
Sbjct: 30  RSVHCQIIKKGL---HLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 109 ARS-------------VDAKP-----------------QAIVLFQRMIEQGNVLPDKHTF 138
           A+               D  P                  AI +F +MI +  V P + T 
Sbjct: 87  AKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE-RVPPSQFTV 145

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              L +CA       G++ H+ + K GL S V +  SL++ YA CG   +A  VFD M  
Sbjct: 146 SNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTV 205

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRM------------------------------- 227
           +++ +WN +I  ++Q G+F+ A   F +M                               
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKM 265

Query: 228 --QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
             +   +PD +T  SI SACA L  L++G   HAYILR       T   V N+LI MY K
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE---TSGAVGNALISMYAK 322

Query: 286 CGSLDI---------------------------------ARQVFESMPKRDLTSWNSIIL 312
            G ++I                                 AR++F  +  RD+ +W ++I+
Sbjct: 323 SGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIV 382

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YN 371
           G+  +G    AL+ F RL+V E   PNS T   +LS  +   ++  G+      I    +
Sbjct: 383 GYVQNGLWNDALELF-RLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES 441

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            TP + +   L+ + A+ GNI+ A  +      K + V W S++ A  +
Sbjct: 442 STPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 176/418 (42%), Gaps = 83/418 (19%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E GN       F   L+    +     G+  H  I K+GL   VY+ N+L+ FYA  G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFV-------------------------------QF 214
           L  A+ VFD M  +S  SWN +I  +                                QF
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR---------- 263
           G FD+A+ +F +M      P  +T  ++ S+CA   TL +G   H+++++          
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 264 --------HCDHSLVTDVLVN----------NSLIDMYCKCGSLDIARQVFESMPKRDLT 305
                    C   ++  V+ +          N+LI +Y + G  ++A   FE MP RD+ 
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWNS+I G++  G    AL  F +++ E S  P++ T   +LSAC +   ++ G+     
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ---- 296

Query: 366 MINEYNITPVLEHYG----CLVDLLARAGNIDEALHLVS-NMPMKPDAVIWRSLLDACCK 420
            I+ Y +    E  G     L+ + A++G ++ A  +V  N     + + + SLLD   K
Sbjct: 297 -IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 421 ----KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
               K A  + ++   + V+     I           Y     WND   + +LM ++G
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVG---------YVQNGLWNDALELFRLMVNEG 404


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/624 (35%), Positives = 351/624 (56%), Gaps = 40/624 (6%)

Query: 2   AVAIVQGGP-PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           A A++QG P PT +T+                  SLL +    +  +    +H +    A
Sbjct: 236 ATALLQGLPAPTQRTYE-----------------SLLLAAARARDTALAAAVHRRL--EA 276

Query: 61  LPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
            P       + +R+I  +A+ + L  A +VF +    N F WN +++A A + D   +A+
Sbjct: 277 DPVFRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALA-DHGEEAL 335

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKAC-----AYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
                M   G V  D +++   LKAC     ++L A ++ ++ HAH  +RG     ++  
Sbjct: 336 TCLADMGRLG-VPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVAT 394

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---F 231
           +LI  YA  G +  A +VF +M +R+LVSW+ MI  + +      A+++F+ M       
Sbjct: 395 TLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADL 454

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            P+  T  S+  ACAG+  L  G   HAYILR     LV+   V N+L+ MY KCG L+ 
Sbjct: 455 VPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVS---VLNALMAMYMKCGCLET 511

Query: 292 ARQVFESMPKR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            R +F  + +R ++ SWNS+I G+ +HG    +L+ F+ ++ EE  SPN ITFV VL AC
Sbjct: 512 GRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMI-EEGISPNIITFVSVLGAC 570

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H G+V +G+  F+ M+ EYN+TP  EHY C+VDLL RAG +DEA+ L+ +M ++P   +
Sbjct: 571 SHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQV 629

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           W SLL AC + H  V  +E     + + E    +G YVLL+ +YA A+  N V ++++L+
Sbjct: 630 WGSLLGAC-RIHGHVEYAEMACSHLFDLEPR-NAGNYVLLADIYARAKLQNQVDVLKELL 687

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
            +  + K PGCS IE+    + F + D  +PQ +++   +     ++K+ GY PD +++ 
Sbjct: 688 EEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPD-TRSV 746

Query: 531 MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNV 590
           + D  ++ K+  L  HSE+LA+A G++    G  IR+ KNLR+C+DCH VTK IS+  + 
Sbjct: 747 LYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDR 806

Query: 591 EIIVRDRARFHHFKDGSCSCMDYW 614
           EI+VRD  RFHHF++G CSC DYW
Sbjct: 807 EIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 337/639 (52%), Gaps = 67/639 (10%)

Query: 12  TPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY 71
           +  TH H  FNNN    S    + L++S   C  +         A+R     + K+ + +
Sbjct: 28  SSHTHQHE-FNNNNVIAS----NKLIASYVRCGDIDS-------AVRVFEDMKVKSTVTW 75

Query: 72  SRIIHFASFAD----LDYAFRVFYQIENPNSFT--------------------------- 100
           + I+  A+FA      +YA ++F +I  PN+ +                           
Sbjct: 76  NSIL--AAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK 133

Query: 101 ----WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
               WNT+I A A+ V    +A  LF  M       P+K+   ++     Y+        
Sbjct: 134 DVASWNTMISALAQ-VGLMGEARRLFSAM-------PEKNCVSWSAMVSGYVACGDL--D 183

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
           A    F    +  V    ++I  Y   G ++LA ++F  M  R+LV+WN MI  +V+ G 
Sbjct: 184 AAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGR 243

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            +  L+LFR M +   +P+  +  S+   C+ L+ L LG   H  +   C   L +D   
Sbjct: 244 AEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLV---CKCPLSSDTTA 300

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             SL+ MY KCG L  A ++F  +P++D+  WN++I G+A HG  + AL+ FD +  +E 
Sbjct: 301 GTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMK-KEG 359

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ ITFV VL ACNH G+V  G  YF+ M  ++ I    EHY C+VDLL RAG + EA
Sbjct: 360 LKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEA 419

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
           + L+ +MP KP   I+ +LL AC + H ++ L+E  AK ++E +  I +G YV L+ VYA
Sbjct: 420 VDLIKSMPFKPHPAIYGTLLGAC-RIHKNLNLAEFAAKNLLELDPTIATG-YVQLANVYA 477

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           +  RW+ V  +R+ M D  V K PG S IEI+ + H F + D  HP+   I+  L  +++
Sbjct: 478 AQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEK 537

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           K+K  GY PD  +  + D  ++ K+  L  HSE+LAIA G+L +  G+PIRVFKNLRVC 
Sbjct: 538 KMKLAGYVPDL-EFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCG 596

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH  TK IS I   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 597 DCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/593 (36%), Positives = 339/593 (57%), Gaps = 29/593 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY- 91
           +++LS+      + +  Q H    +  L   H    + S ++H ++    +D A +V   
Sbjct: 125 TTVLSACAHSGRVFEGMQCHGFLFKFGLVFHH---FVKSSLVHMYSKCFHVDLALQVLES 181

Query: 92  ---QIENPN-SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
               I+N N +F +N+++ A   S     +A+ +  RM+++G V+ D  T+   +  C  
Sbjct: 182 EHGNIDNDNDAFCYNSVLNALVES-GRLGEAVEVLGRMVDEG-VVWDSVTYVSVMGLCGQ 239

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           +     G Q HA + K GL  DV++ + L+  +  CG +  A KVFD +  R++V W  +
Sbjct: 240 IRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSL 299

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEPDG-----YTFQSITSACAGLATLSLGMWAHAYIL 262
           + A++Q GEF+  L L   M    + +G     +TF  + +A AG+A L  G   HA + 
Sbjct: 300 MTAYLQNGEFEETLNLLSCM----DREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVE 355

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           +     +   V+V N+LI+MY KCG +D +  VF  M  RD+ +WN++I G++ HG  + 
Sbjct: 356 KL---GIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQ 412

Query: 323 ALKYF-DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
           AL  F D L   E   PN +TFVGVLSAC H  +V+EG  Y + ++  + + P LEHY C
Sbjct: 413 ALLLFQDMLSAGEC--PNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTC 470

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +V +L RAG ++EA + +    +K D V WR LL+AC   H +  L  ++A+ +++ +  
Sbjct: 471 VVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNAC-NIHRNYNLGTKIAETILQMDPR 529

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
              G Y LLS +YA AR W+ V ++RK+M ++ V KEPG S IEI    H F +  ++HP
Sbjct: 530 D-MGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHP 588

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           +  QIY  + L+ E +K  GY P+  +A + D  D+ K+S L  HSE+LAIA G++ +  
Sbjct: 589 ECIQIYNKVQLLLEMIKQLGYVPNI-EAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPS 647

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PIRV KNLR+C+DCH   KLIS++ N  IIVRD +RFHHF+DG+C+C D+W
Sbjct: 648 PAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 183/388 (47%), Gaps = 28/388 (7%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKT------LLIYSRIIHFASFADLDYAFRVFYQIENPN 97
           K+++  K IH Q L       H +      + + S I  +   + L  A  +F ++   +
Sbjct: 26  KNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRS 85

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
             ++N L+     S +   + + LF+ M+      P+++ F   L ACA+     +G Q 
Sbjct: 86  VVSYNVLMGGYLHSGE-HLEVVKLFKNMVSSL-YQPNEYVFTTVLSACAHSGRVFEGMQC 143

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF-------DNMLERSLVSWNVMIDA 210
           H  +FK GLV   ++ +SL+H Y+ C H+DLA +V        DN  +     +N +++A
Sbjct: 144 HGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDN--DNDAFCYNSVLNA 201

Query: 211 FVQFGEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            V+ G    A+++  RM    +++  D  T+ S+   C  +  L LG+  HA +L+    
Sbjct: 202 LVESGRLGEAVEVLGRMVDEGVVW--DSVTYVSVMGLCGQIRDLGLGLQVHAQLLK---G 256

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            L  DV V + L+DM+ KCG +  AR+VF+ +  R++  W S++  +  +G  E  L   
Sbjct: 257 GLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLL 316

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             +  E + S N  TF  +L+A      +  G D     + +  I   +     L+++ +
Sbjct: 317 SCMDREGTMS-NEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVGNALINMYS 374

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G ID +  +  +M  + D + W +++
Sbjct: 375 KCGCIDSSYDVFFDMRNR-DIITWNAMI 401


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/548 (38%), Positives = 312/548 (56%), Gaps = 33/548 (6%)

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           L + + +HF +F  L            P+    + ++  C  S D K  A     R++  
Sbjct: 53  LFHCKTLHFLTFVLL------------PDPTVLHRVLERCRVSTDLK-TATKTHARVVVL 99

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
           G       T+P  + +    +A         H+F R L  D++  N +I      G  D+
Sbjct: 100 GFA-----TYPSLVASLISTYAQCHRPHIALHVFSRIL--DLFSMNLVIESLVKGGQCDI 152

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG 247
           A KVF  M  R +V+WN MI  +V+   F  AL +FRRM     EPDG+TF S+ +ACA 
Sbjct: 153 AKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACAR 212

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L  L    W H  ++   +  +  + +++ +LIDMY KCG +D++RQVFE + +  ++ W
Sbjct: 213 LGALGNAKWVHGLMV---EKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVW 269

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N++I G A+HG A  A   F R+ +E    P+SITF+G+L+AC+H G+V EGR YF +M 
Sbjct: 270 NAMISGLAIHGLAMDATLVFSRMEMEHVL-PDSITFIGILTACSHCGLVEEGRKYFGMMQ 328

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
           N + I P LEHYG +VDLL RAG ++EA  ++  M M+PD VIWR+LL AC      +  
Sbjct: 329 NRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSAC-----RIHR 383

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI- 486
            +E+ +  I +   + SG +VLLS +Y S   W+    VR++M  +GV K  G S +E+ 
Sbjct: 384 KKELGEVAIANISRLESGDFVLLSNMYCSLNNWDGAERVRRMMKTRGVRKSRGKSWVELG 443

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           DGI H+F A   SHP+ K IY  L+ + ++ K  G+TP  +   ++D  ++ K+ +L  H
Sbjct: 444 DGI-HQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGFTP-LTDLVLMDVSEEEKEENLMFH 501

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LA+A  +L   PG  IR+ KNLR+C DCH   K++S+I N +IIVRDR RFH F+ G
Sbjct: 502 SEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVSKILNRKIIVRDRIRFHQFEGG 561

Query: 607 SCSCMDYW 614
            CSC DYW
Sbjct: 562 VCSCKDYW 569


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 322/586 (54%), Gaps = 18/586 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L +     + +  +QIH   ++          +    +  +A    LD A +VF  +
Sbjct: 310 SSVLKACAGAGAFNLGRQIHGFMVKAV--ADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 94  ENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAF 151
              +   WN LI  C  S D +  + + LF RM ++G ++  ++ T    LK+ A   A 
Sbjct: 368 PRRDLILWNALISGC--SHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAI 425

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
              +Q HA   K GL+SD ++ N LI  Y  CG LD A KVF       ++S   M+ A 
Sbjct: 426 CHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTAL 485

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q    + A+KLF +M +   EPD +   S+ +AC  L+    G   HA++++       
Sbjct: 486 SQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKR---QFT 542

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           +DV   N+L+  Y KCGS++ A   F  +P+R + SW+++I G A HG  + AL  F R+
Sbjct: 543 SDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRM 602

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           + +E  +PN IT   VLSACNH G+V + + YF+ M   + I    EHY C++D+L RAG
Sbjct: 603 L-DEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAG 661

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYV 448
            +++A+ LV+NMP + +A +W +LL A  + H    L    A+++  +E E    SG +V
Sbjct: 662 KLEDAMELVNNMPFQANAAVWGALLGAS-RVHRDPELGRMAAEKLFTLEPEK---SGTHV 717

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LL+  YASA  W+++  VRKLM D  V KEP  S +EI    H F  GD SHP T+ IYG
Sbjct: 718 LLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYG 777

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L  + + +   GY P+  +  + D     K+  L  HSERLA+A  +++   G PIRV 
Sbjct: 778 KLAELGDLMNKAGYVPNV-EVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVK 836

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR+C+DCH   K IS+I + EII+RD  RFHHF +G+CSC DYW
Sbjct: 837 KNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 184/393 (46%), Gaps = 26/393 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQ--QHKTLLIYSRIIHFASFADLDYAFR-VF 90
            S L+     +S+     +H+  L++ L     +  L +YSR         L  A R VF
Sbjct: 8   GSALARFGTSRSLFAGAHLHSHLLKSGLLAGFSNHLLTLYSR-------CRLPSAARAVF 60

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +I +P   +W++L+   A S +  P+  +L  R +    V  ++   P  LK CA    
Sbjct: 61  DEIPDPCHVSWSSLV--TAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CAPDVR 117

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML----ERSLVSWNV 206
           F  G Q HA      LV DV++ N+L+  Y   G +D A ++FD  +    ER+ VSWN 
Sbjct: 118 F--GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 207 MIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI A+V+  +   A+ +FR M    E P+ + F  + +AC G   L  G   H  ++R  
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR-- 233

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 DV   N+L+DMY K G +++A  VFE MP  D+ SWN+ I G   HG    AL+
Sbjct: 234 -TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALE 292

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
              ++       PN  T   VL AC   G  + GR     M+            G LVD+
Sbjct: 293 LLLQM-KSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDM 350

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            A+ G +D+A  +   MP + D ++W +L+  C
Sbjct: 351 YAKHGFLDDARKVFDFMPRR-DLILWNALISGC 382



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 186/407 (45%), Gaps = 46/407 (11%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI----ENPNSFTWNTLIR 106
           Q+HA A+ T L   H   +  + +  +  F  +D A R+F +        N+ +WNT+I 
Sbjct: 121 QVHALAVATRLV--HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMIS 178

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           A  ++ D    AI +F+ M+  G   P++  F   + AC        G+Q H  + + G 
Sbjct: 179 AYVKN-DQSGDAIGVFREMVWSGE-RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGY 236

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
             DV+  N+L+  Y+  G +++A  VF+ M    +VSWN  I   V  G    AL+L  +
Sbjct: 237 EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQ 296

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M+     P+ +T  S+  ACAG    +LG   H ++++        D  V   L+DMY K
Sbjct: 297 MKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVAD---FDEFVAVGLVDMYAK 353

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE-SFSPNSITFV 344
            G LD AR+VF+ MP+RDL  WN++I G +  GR    L  F R+  E      N  T  
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 345 GVLSA-------CNHR---------GMVSEGR-------DYFDVMINEYNITPVLEHYG- 380
            VL +       C+ R         G++S+          Y+     +Y I    E    
Sbjct: 414 SVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSD 473

Query: 381 ------CLVDLLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDAC 418
                  ++  L++  + ++A+ L   M    ++PD+ +  SLL+AC
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNAC 520


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 327/595 (54%), Gaps = 25/595 (4%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRT---ALPQQHKTLLIYSRIIHFASFADLDY 85
           S N+ +SL+ S    +     +  HAQ ++T    LP       IY+ +++  S  D   
Sbjct: 5   SPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPS-----FIYNHLVNMYSKLDRPN 59

Query: 86  AFRVFYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQ-RMIEQGNVLPDKHTFPFALK 143
           + ++   +  N +  TW  LI   A SV        LF    + + ++ P+  TFP A K
Sbjct: 60  SAQLLLSLTPNRSVVTWTALI---AGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFK 116

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A   L +   GKQ HA   K G +SDV++  S    Y+  G  + A K+FD M ER++ +
Sbjct: 117 ASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176

Query: 204 WNVMIDAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           WN  +   V  G +D AL  F   R+  I  EP  +   S+ SACAGL+ L +G   H  
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFIEARKEGI--EPTDFMVSSVLSACAGLSVLEVGKSVHTL 234

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
            ++ C   +V ++ V ++L+DMY KCGS++ A + F+ MP+R+L +WN++I G+A  G+A
Sbjct: 235 AVKAC---VVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQA 291

Query: 321 EAALKYFDRLVV-EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           + A+  FD +       +PN +TFV VLSAC+  G V+ G + F+ M   Y I P  EHY
Sbjct: 292 DMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHY 351

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL RAG +++A   +  MP++P   +W +LL A  K      L +  A  + E +
Sbjct: 352 ACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGAS-KMFGKSELGKVAADNLFELD 410

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
             + SG +VLLS ++A+A RW +  LVRK M D G+ K  GCS I      H F A DTS
Sbjct: 411 P-LDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTS 469

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           H +  +I   L  +  ++++ GY PD S  A+ D  ++ K   +  HSE++A+A G++++
Sbjct: 470 HERNSEIQAMLAKLRGEMEAAGYIPDTS-FALFDLEEEEKAMEVWYHSEKIALAFGLISI 528

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G+PIR+ KNLR+C DCH   K IS I   EIIVRD   FH F+D  CSC DYW
Sbjct: 529 PAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 307/522 (58%), Gaps = 13/522 (2%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P    +N  I  C+R+     +A+ LF  M     +  D++TFP  L + A L   +   
Sbjct: 4   PPGVAYNAAISRCSRA-GLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAAD 62

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             HA + + GLV+ +++ N+L+  YA       A  +FD M  R +V+W  ++    + G
Sbjct: 63  ALHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSG 122

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             D+AL+++R M     EPD Y   +  S+CAG  TL LG   HA  +R      ++   
Sbjct: 123 SHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLS--- 179

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V NSL+ MY K GSL  AR+VF++   R   +W ++I+G+A +GR E +L+ +  +V   
Sbjct: 180 VGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMV-HS 238

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              P+ +TF+G+L AC+H G+V  GR +F  M  ++ ITP  +HY C+VD+L RAG +DE
Sbjct: 239 GCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDE 298

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLSR 452
           A+ L+    MK DA +W++LL AC + H +  L+E  A+ V  ++    +    Y++LS 
Sbjct: 299 AMELLDQSTMKLDATVWKALLGAC-RTHRNAELAERAAEMVWRLDPTDAV---PYIMLSN 354

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +Y+  RRW+DV  +R LM  +G+ KEPGCS +   G+ H F+  D  HP+T +IY  ++ 
Sbjct: 355 LYSRERRWSDVARIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEE 414

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           + EK+++ G+  D +  A+ DE  +G++  L  HSERLA+A G+L L  G P+RVFKNLR
Sbjct: 415 MMEKVRAEGFVAD-TDWALQDEAPEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLR 473

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH   K++++++  EII+RD   FHH +DG CSC DYW
Sbjct: 474 VCGDCHVAIKMVAKVYGREIILRDSNCFHHMRDGVCSCGDYW 515


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 339/617 (54%), Gaps = 17/617 (2%)

Query: 3    VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRT 59
            V +V  G      +S  IF   + E    N  +  S L  C  +  L+   QIH+Q ++T
Sbjct: 460  VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 519

Query: 60   ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
                Q    +    I  +A    LD A+ +  +    +  +W T+I A     +   +A+
Sbjct: 520  NF--QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI-AGYTQYNFDDKAL 576

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
              F++M+++G +  D+     A+ ACA L A  +G+Q HA     G  SD+   N+L+  
Sbjct: 577  TTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 635

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            Y+ CG ++ +   F+       ++WN ++  F Q G  + AL++F RM +   + + +TF
Sbjct: 636  YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 695

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             S   A +  A +  G   HA I +    S   +  V N+LI MY KCGS+  A + F  
Sbjct: 696  GSAVKAASETANMKQGKQVHAVITKTGYDS---ETEVCNALISMYAKCGSISDAEKQFLE 752

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            +  ++  SWN+II  ++ HG    AL  FD+++   +  PN +T VGVLSAC+H G+V +
Sbjct: 753  VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI-HSNVRPNHVTLVGVLSACSHIGLVDK 811

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G  YF+ M +EY ++P  EHY C+VD+L RAG +  A   +  MP+KPDA++WR+LL AC
Sbjct: 812  GIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
               H ++ + E  A  ++E E    S  YVLLS +YA +++W+   L R+ M +KGV KE
Sbjct: 872  V-VHKNMEIGEFAAHHLLELEPED-SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-D 537
            PG S IE+    H F+ GD +HP   +I+ +   + ++    GY  D    ++++EL  +
Sbjct: 930  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDC--FSLLNELQHE 987

Query: 538  GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
             K   + +HSE+LAI+ G+L+L   +PI V KNLRVC DCH   K +S++ N EIIVRD 
Sbjct: 988  QKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDA 1047

Query: 598  ARFHHFKDGSCSCMDYW 614
             RFHHF+ G+CSC DYW
Sbjct: 1048 YRFHHFEGGACSCKDYW 1064



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 193/400 (48%), Gaps = 18/400 (4%)

Query: 25  RNEGSFNNHSSLLSSLTEC----KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
            N G   NH +L   L  C     S+ + +++H+Q L+  L        +  ++  F  F
Sbjct: 76  ENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNG---CLSEKLFDFYLF 132

Query: 81  -ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
             DL  AF+VF ++     FTWN +I+  A S +   +   LF RM+ + NV P++ TF 
Sbjct: 133 KGDLYGAFKVFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSE-NVTPNEGTFS 190

Query: 140 FALKAC-AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
             L+AC     AF   +Q HA I  +GL     + N LI  Y+  G +DLA +VFD +  
Sbjct: 191 GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 250

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           +   SW  MI    +      A++LF  M +L   P  Y F S+ SAC  + +L +G   
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           H  +L+       +D  V N+L+ +Y   G+L  A  +F +M +RD  ++N++I G +  
Sbjct: 311 HGLVLK---LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQC 367

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           G  E A++ F R+ + +   P+S T   ++ AC+  G +  G+        +       +
Sbjct: 368 GYGEKAMELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNK 425

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             G L++L A+  +I+ AL       ++ + V+W  +L A
Sbjct: 426 IEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 189/405 (46%), Gaps = 33/405 (8%)

Query: 22  NNNRNEGSFNNHSSLLSSLTECKSMSQ----LKQIHA----QALRTALPQQHKTLLIYSR 73
           N   NEG+F+        L  C+  S     ++QIHA    Q LR +    +  + +YSR
Sbjct: 181 NVTPNEGTFS------GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSR 234

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
                 F DL  A RVF  +   +  +W  +I   +++ + + +AI LF  M   G ++P
Sbjct: 235 ----NGFVDL--ARRVFDGLRLKDHSSWVAMISGLSKN-ECEAEAIRLFCDMYVLG-IMP 286

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
             + F   L AC  + +   G+Q H  + K G  SD Y+ N+L+  Y   G+L  A  +F
Sbjct: 287 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 346

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLS 252
            NM +R  V++N +I+   Q G  + A++LF+RM +   EPD  T  S+  AC+   TL 
Sbjct: 347 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 406

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HAY  +       ++  +  +L+++Y KC  ++ A   F      ++  WN +++
Sbjct: 407 RGQQLHAYTTK---LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            + L      + + F ++ +EE   PN  T+  +L  C   G +  G      +I     
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEE-IVPNQYTYPSILKTCIRLGDLELGEQIHSQII---KT 519

Query: 373 TPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              L  Y C  L+D+ A+ G +D A  ++     K D V W +++
Sbjct: 520 NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMI 563



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 15/298 (5%)

Query: 126 IEQGNVLPDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +E   + P+  T  + L+ C     +  +G++ H+ I K GL S+  ++  L  FY   G
Sbjct: 75  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            L  A KVFD M ER++ +WN MI              LF RM      P+  TF  +  
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194

Query: 244 AC-AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           AC  G     +    HA IL      L    +V N LID+Y + G +D+AR+VF+ +  +
Sbjct: 195 ACRGGSVAFDVVEQIHARILY---QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251

Query: 303 DLTSWNSIILGFALHG-RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           D +SW ++I G + +   AEA   + D  V+     P    F  VLSAC     +  G  
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVL--GIMPTPYAFSSVLSACKKIESLEIGEQ 309

Query: 362 YFDVMINEYNITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              +++    +    + Y C  LV L    GN+  A H+ SNM  + DAV + +L++ 
Sbjct: 310 LHGLVL---KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLING 363


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 339/617 (54%), Gaps = 17/617 (2%)

Query: 3    VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRT 59
            V +V  G      +S  IF   + E    N  +  S L  C  +  L+   QIH+Q ++T
Sbjct: 420  VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 479

Query: 60   ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAI 119
                Q    +    I  +A    LD A+ +  +    +  +W T+I A     +   +A+
Sbjct: 480  NF--QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI-AGYTQYNFDDKAL 536

Query: 120  VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
              F++M+++G +  D+     A+ ACA L A  +G+Q HA     G  SD+   N+L+  
Sbjct: 537  TTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 595

Query: 180  YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
            Y+ CG ++ +   F+       ++WN ++  F Q G  + AL++F RM +   + + +TF
Sbjct: 596  YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 655

Query: 239  QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             S   A +  A +  G   HA I +    S   +  V N+LI MY KCGS+  A + F  
Sbjct: 656  GSAVKAASETANMKQGKQVHAVITKTGYDS---ETEVCNALISMYAKCGSISDAEKQFLE 712

Query: 299  MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            +  ++  SWN+II  ++ HG    AL  FD+++   +  PN +T VGVLSAC+H G+V +
Sbjct: 713  VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI-HSNVRPNHVTLVGVLSACSHIGLVDK 771

Query: 359  GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G  YF+ M +EY ++P  EHY C+VD+L RAG +  A   +  MP+KPDA++WR+LL AC
Sbjct: 772  GIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 831

Query: 419  CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
               H ++ + E  A  ++E E    S  YVLLS +YA +++W+   L R+ M +KGV KE
Sbjct: 832  V-VHKNMEIGEFAAHHLLELEPED-SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 889

Query: 479  PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-D 537
            PG S IE+    H F+ GD +HP   +I+ +   + ++    GY  D    ++++EL  +
Sbjct: 890  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDC--FSLLNELQHE 947

Query: 538  GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
             K   + +HSE+LAI+ G+L+L   +PI V KNLRVC DCH   K +S++ N EIIVRD 
Sbjct: 948  QKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDA 1007

Query: 598  ARFHHFKDGSCSCMDYW 614
             RFHHF+ G+CSC DYW
Sbjct: 1008 YRFHHFEGGACSCKDYW 1024



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 193/400 (48%), Gaps = 18/400 (4%)

Query: 25  RNEGSFNNHSSLLSSLTEC----KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
            N G   NH +L   L  C     S+ + +++H+Q L+  L        +  ++  F  F
Sbjct: 36  ENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNG---CLSEKLFDFYLF 92

Query: 81  -ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
             DL  AF+VF ++     FTWN +I+  A S +   +   LF RM+ + NV P++ TF 
Sbjct: 93  KGDLYGAFKVFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSE-NVTPNEGTFS 150

Query: 140 FALKAC-AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
             L+AC     AF   +Q HA I  +GL     + N LI  Y+  G +DLA +VFD +  
Sbjct: 151 GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 210

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
           +   SW  MI    +      A++LF  M +L   P  Y F S+ SAC  + +L +G   
Sbjct: 211 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 270

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           H  +L+       +D  V N+L+ +Y   G+L  A  +F +M +RD  ++N++I G +  
Sbjct: 271 HGLVLK---LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQC 327

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           G  E A++ F R+ + +   P+S T   ++ AC+  G +  G+        +       +
Sbjct: 328 GYGEKAMELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNK 385

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             G L++L A+  +I+ AL       ++ + V+W  +L A
Sbjct: 386 IEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 424



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 189/405 (46%), Gaps = 33/405 (8%)

Query: 22  NNNRNEGSFNNHSSLLSSLTECKSMSQ----LKQIHA----QALRTALPQQHKTLLIYSR 73
           N   NEG+F+        L  C+  S     ++QIHA    Q LR +    +  + +YSR
Sbjct: 141 NVTPNEGTFS------GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSR 194

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
                 F DL  A RVF  +   +  +W  +I   +++ + + +AI LF  M   G ++P
Sbjct: 195 ----NGFVDL--ARRVFDGLRLKDHSSWVAMISGLSKN-ECEAEAIRLFCDMYVLG-IMP 246

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
             + F   L AC  + +   G+Q H  + K G  SD Y+ N+L+  Y   G+L  A  +F
Sbjct: 247 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 306

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLS 252
            NM +R  V++N +I+   Q G  + A++LF+RM +   EPD  T  S+  AC+   TL 
Sbjct: 307 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 366

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HAY  +       ++  +  +L+++Y KC  ++ A   F      ++  WN +++
Sbjct: 367 RGQQLHAYTTK---LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 423

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            + L      + + F ++ +EE   PN  T+  +L  C   G +  G      +I     
Sbjct: 424 AYGLLDDLRNSFRIFRQMQIEE-IVPNQYTYPSILKTCIRLGDLELGEQIHSQII---KT 479

Query: 373 TPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
              L  Y C  L+D+ A+ G +D A  ++     K D V W +++
Sbjct: 480 NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMI 523



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 15/298 (5%)

Query: 126 IEQGNVLPDKHTFPFALKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +E   + P+  T  + L+ C     +  +G++ H+ I K GL S+  ++  L  FY   G
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            L  A KVFD M ER++ +WN MI              LF RM      P+  TF  +  
Sbjct: 95  DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 154

Query: 244 AC-AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           AC  G     +    HA IL      L    +V N LID+Y + G +D+AR+VF+ +  +
Sbjct: 155 ACRGGSVAFDVVEQIHARILY---QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 211

Query: 303 DLTSWNSIILGFALHG-RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           D +SW ++I G + +   AEA   + D  V+     P    F  VLSAC     +  G  
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVL--GIMPTPYAFSSVLSACKKIESLEIGEQ 269

Query: 362 YFDVMINEYNITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              +++    +    + Y C  LV L    GN+  A H+ SNM  + DAV + +L++ 
Sbjct: 270 LHGLVL---KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLING 323


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 328/620 (52%), Gaps = 47/620 (7%)

Query: 32  NHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N S  L  L  C   +S S   ++H+Q ++    +   +LL  + +  +     +  A +
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKS--SLLSNTLLDVYGKCGLIPQALQ 59

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++ N +  +W +++ A  +++  + + + +   M     + PD   F   ++AC+ L
Sbjct: 60  LFDEMPNRDHVSWASILTAHNKALIPR-RTLSMLNTMFTHDGLQPDHFVFACIVRACSSL 118

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GKQ HA         D  + +SLI  Y  CG  D A  VFD++L ++ VSW  MI
Sbjct: 119 GYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMI 178

Query: 209 DAFVQFGEFDSALKLFRRMQI------------------------LFEP---------DG 235
             + + G    A+ LF +  +                        LF           D 
Sbjct: 179 SGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDP 238

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
               S+   CA LA L LG   H  ++     S +    ++N+L+DMY KC  +  A+ +
Sbjct: 239 LVLSSVVGGCANLALLELGKQIHGLVIALGFESCL---FISNALVDMYAKCSDILAAKDI 295

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F  MP++D+ SW SII+G A HG+AE AL  +D +V+     PN +TFVG+L AC+H G+
Sbjct: 296 FYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSR-IKPNEVTFVGLLYACSHAGL 354

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           VS GR+ F  M  +Y+I P L+HY CL+DLL+R+G++DEA +L+  +P KPD   W SLL
Sbjct: 355 VSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLL 414

Query: 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
            A C +H ++ +   +A +V++ +    S  Y+LLS VYA A  W  V  VRKLM+   V
Sbjct: 415 SA-CMRHNNLEMGVRIADRVLDLKPEDPS-TYILLSNVYAGAEMWGSVSKVRKLMSSMEV 472

Query: 476 TKEPGCSSIEIDGIAHEFFAGDT-SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
            KEPG SSI+    +  F AG++  HP   +I   L  +D +++ RGY P+ S   + D 
Sbjct: 473 RKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTS-FVLYDI 531

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
               K+  L  HSERLA+A G+L   PG  IR+ KNLR+C DCH V K IS I   EI+V
Sbjct: 532 EQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMV 591

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RD  R+HHFK+G CSC D+W
Sbjct: 592 RDATRYHHFKEGKCSCNDFW 611


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 339/611 (55%), Gaps = 39/611 (6%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F++ +  G   N +  +S L  C   S L   KQIH+  +R  L   +  + + + I +
Sbjct: 175 LFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQL---NANITVETAICN 231

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +     L+ A  VF  ++  N+ TW  L+    ++   +  A+ LF RM  +G V  D+
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEV-ALELFARMAMEG-VELDE 289

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
             F   LK C  L  +  G+Q H+HI K G  S+V +   L+ FY  CG ++ A + F  
Sbjct: 290 FVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGR 349

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ----ILFEPDGYTFQSITSACAGLATL 251
           + E + VSW+ +I  F Q G  +  +K+F  ++    +L   + + + S+  ACA  A L
Sbjct: 350 ISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVL---NSFIYTSVFQACAAQANL 406

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           ++G  AH   ++     LV+ +   ++++ MY KCG LD AR+ FES+ + D  +W +II
Sbjct: 407 NMGSQAHGDAIKR---GLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAII 463

Query: 312 LGFALHGRAEAALKYFDRLVVEESFS--PNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
            G+A HG A  AL +F R+   +S+   PN++TF+ VL+AC+H G+V+E + Y   M  +
Sbjct: 464 SGYAYHGNAAEALGFFRRM---QSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRD 520

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           Y + P ++HY C++D  +RAG + EAL L++ MP +PDA+ W+SLL  C   H  + L +
Sbjct: 521 YGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCW-AHCDLKLGK 579

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A+ +   + G  +G Y+LL  +Y++  +W + G VRKLM ++ + KE  CS I + G 
Sbjct: 580 IAAENLFRLDPGDTAG-YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQ 638

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD------GKQSSL 543
            H F  GD  HPQT+ IY        KL+    +   S   +++E DD       ++  L
Sbjct: 639 VHRFVVGDRHHPQTEAIY-------SKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQL 691

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G+++ +   PI VFKNLR C+DCHE  K +S +   +I+VRD  RFHHF
Sbjct: 692 LDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHF 751

Query: 604 KDGSCSCMDYW 614
           K G CSC DYW
Sbjct: 752 KSGKCSCNDYW 762



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 19/303 (6%)

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F + ++  +V    H++    +AC  L + + G+  H  + +        I N L+  Y 
Sbjct: 74  FLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYC 133

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQS 240
            CG      KVFD ML ++LVSW ++I A+ + GE + A++LF  MQ     P+   + S
Sbjct: 134 DCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMS 193

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           +  +C G + L LG   H++++R     L  ++ V  ++ +MY +CG L+ A+ VF+ M 
Sbjct: 194 LLQSCLGPSFLELGKQIHSHVIR---AQLNANITVETAICNMYVRCGWLEGAKLVFDGMD 250

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            ++  +W  +++G+    + E AL+ F R+ + E    +   F  VL  C        GR
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAM-EGVELDEFVFSIVLKVCCGLEDWDMGR 309

Query: 361 DYFDVMI-----NEYNI-TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
                ++     +E ++ TP       LVD   + G+I+ A      +  +P+ V W +L
Sbjct: 310 QIHSHIVKLGAESEVSVGTP-------LVDFYVKCGDIESAYRSFGRIS-EPNDVSWSAL 361

Query: 415 LDA 417
           +  
Sbjct: 362 ISG 364


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 305/539 (56%), Gaps = 11/539 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A   DL  A  VF   +  +S TWN+LI    +S   K + +  F+ M  +    PD  
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYK-EGLESFKMMKMERK--PDSV 423

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L   + L   +QG+  H  + K G  +++ I NSL+  YA CG +D   KVF  M
Sbjct: 424 TFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
               ++SWN +I + V F +     ++   M+     PD  T   I   C+ LA    G 
Sbjct: 484 SAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGK 543

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H YI +       ++V + N+LI+MY KCGSL+   +VF+ M ++D+ +W ++I  F 
Sbjct: 544 EIHGYIFKS---GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFG 600

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           ++G  + ALK F  + +     P+S+ F+  + AC+H GMV EG  +FD M  +YN+ P 
Sbjct: 601 MYGEGKKALKAFQDMELSGVL-PDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPR 659

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHY C+VDLLAR+G + +A   + +MPMKPDA +W +LL AC +   +  +++ V+K++
Sbjct: 660 MEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSAC-RARGNTNIAQRVSKKI 718

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           +E      +G YVL+S +YA+  +W+ V  VR  M  KG+ KEPG S IEI    + F  
Sbjct: 719 LELNSDD-TGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRT 777

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD S  Q  ++   L+ +   +   GY  D  Q A+ D  +D K+  L  HSERLAIA G
Sbjct: 778 GDKSFEQYDKVKDLLEYLVRLMAKEGYVADL-QFALHDVEEDDKRDMLCGHSERLAIAFG 836

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +LN KPG P+ V KNLRVC DCH VTK I++I   EI+VRD  RFH FKDG+CSC D+W
Sbjct: 837 LLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 199/406 (49%), Gaps = 23/406 (5%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HF 77
           S FNN          SSLL +L+  K+  QL+ +H+  + + L     +++   ++I  +
Sbjct: 8   SNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSL---SVIFSGKLISKY 64

Query: 78  ASFADLDYAFRVFYQIENPNS-FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           A   D   +  VF  I   N+ + WN++IRA   +     QA+  +  M E+  + PD  
Sbjct: 65  AQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHN-GLFTQALGYYTEMREK-KLQPDAF 122

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TFP  + +CA +     G   H H  + G  SD+YI N+LI  Y+    LD A  VF+ M
Sbjct: 123 TFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEM 182

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             R  VSWN +I  +   G ++ AL ++ + ++    PD +T  S+  AC  L  +  G+
Sbjct: 183 SNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV 242

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H  I +     +  DV++ N L+ MY K   L  AR+VF  M  +D  +WN++I G+A
Sbjct: 243 AVHGVIEK---IGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA 299

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
             GR EA++K F  ++  + F P+ ++    + AC   G +  G+      +++Y I   
Sbjct: 300 QLGRHEASVKLFMDMI--DGFVPDMLSITSTIRACGQSGDLQVGK-----FVHKYLIGSG 352

Query: 376 LE--HYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            E     C  L+D+ A+ G++  A  +      K D+V W SL++ 
Sbjct: 353 FECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLING 397



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 170/341 (49%), Gaps = 13/341 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPDK 135
           ++ F DLD A  VF ++ N +S +WN+LI   C+        A+ ++ +    G V PD 
Sbjct: 166 YSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGF--WEDALDMYHKFRMTGMV-PDC 222

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    L AC  L A  +G   H  I K G+  DV I N L+  Y     L  A +VF  
Sbjct: 223 FTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSK 282

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM 255
           M  +  V+WN MI  + Q G  ++++KLF  M   F PD  +  S   AC     L +G 
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGK 342

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           + H Y++         D +  N LIDMY KCG L  A++VF++   +D  +WNS+I G+ 
Sbjct: 343 FVHKYLI---GSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITP 374
             G  +  L+ F  + +E    P+S+TFV +LS  +    +++GR  + DV+  ++    
Sbjct: 400 QSGYYKEGLESFKMMKMER--KPDSVTFVLLLSIFSQLADINQGRGIHCDVI--KFGFEA 455

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L     L+D+ A+ G +D+ L + S M    D + W +++
Sbjct: 456 ELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVI 495


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 354/626 (56%), Gaps = 26/626 (4%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           M  A  Q G P     S  +F     EG+  +  +L+S L  C SM Q+    A  L  A
Sbjct: 324 MISACWQNGWPQ---ESLRLFFAMNLEGTKPSGVTLVSVLNAC-SMLQVGSATAFVLEQA 379

Query: 61  LPQQHKT---LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ 117
           +     T   +L  + +  +A   DL  A   F  I++P+  +WN +  A  +   ++ +
Sbjct: 380 MEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSR-E 438

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAFSQGKQAHAHIFKRGLVSDVYINN 174
           A+VLF+RM+ +G V P   TF  AL ACA      A + GK+  + + + GL  D  + N
Sbjct: 439 ALVLFERMLLEG-VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVAN 497

Query: 175 SLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--L 230
           + ++ YA CG L  A  VF+ +    R  ++WN M+ A+   G    A +LF+ M+   L
Sbjct: 498 ATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKL 557

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            +P+  TF ++  A     +++ G   HA ++    +   +D ++ N+L++MY KCGSLD
Sbjct: 558 VKPNKVTFVAVLDASTSRTSIAQGREIHARVV---SNGFESDTVIQNALLNMYAKCGSLD 614

Query: 291 IARQVFE--SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
            A+ +F+  S  + D+ +W S+I G+A +G+AE ALK F   + ++   PN +TF+  L+
Sbjct: 615 DAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLF-WTMQQQGVRPNHVTFISALT 673

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           ACNH G + +G +    M  ++ I P  +H+ C+VDLL R G +DEA  L+     + D 
Sbjct: 674 ACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADV 732

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
           + W +LLDAC K    +   E  A+++++ +  + S  Y++L+ +YA+A RWN+   +RK
Sbjct: 733 ITWMALLDAC-KNSKELERGERCAERIMQLDPEVASS-YIVLASMYAAAGRWNEAATIRK 790

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
            M DKG+  +PGCS++E++   H F AGD SHP++++IY  L+ +   +K+ GY  D + 
Sbjct: 791 TMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVAD-TG 849

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
             + D   + K+  L  HSE+LAIA G+++   G P+RV KNLRVC DCH  TKLIS++ 
Sbjct: 850 LVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVT 909

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
             +I++RD +R+HHF  G+CSC DYW
Sbjct: 910 GRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 133/238 (55%), Gaps = 14/238 (5%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR--GLVSDVYINNSLIHFYAS 182
           + +QG+  P   T+   L+AC  L A  QG++ HAHI  R   L +  ++ + LI  +A 
Sbjct: 35  IADQGHCAPS--TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAK 92

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSIT 242
           CG+L  A  + D     S+ S   MI A+++ G  D A++LF RM++   P+ +   ++ 
Sbjct: 93  CGNLAEAEALADRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRMEV--RPNCHALIALV 148

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-- 300
           +AC+ L  L+ G   H+ I    D     + ++ N+LI MY KCGSL  A+Q F+ +P  
Sbjct: 149 NACSCLGNLAAGRRIHSQI---SDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 205

Query: 301 -KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
            KRD+ +WN++I  F  +G A  AL+ F  +  + +  PNS+TFV VL +C   G++S
Sbjct: 206 SKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLS 263



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 185/409 (45%), Gaps = 31/409 (7%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           + +  LL +    +++ Q +++HA  L   +   + + L    I+  A   +L  A  + 
Sbjct: 44  STYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALA 103

Query: 91  YQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            +  +  S T   +IRA       +P +A+ LF RM     V P+ H     + AC+ L 
Sbjct: 104 DRFASVYSCT--AMIRAWME--HGRPDKAMELFDRM----EVRPNCHALIALVNACSCLG 155

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNV 206
             + G++ H+ I  R    +  + N+LI  Y+ CG L  A + FD +    +R +V+WN 
Sbjct: 156 NLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNA 215

Query: 207 MIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSAC--AGLATLSLGMWAHAYIL 262
           MI AF++ G    AL+LFR M       P+  TF S+  +C  AGL +L      H  I+
Sbjct: 216 MISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIV 275

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF----ESMPKRDLTSWNSIILGFALHG 318
                 +  +  V  +L+D Y K GSLD A +VF    +  P   L + +++I     +G
Sbjct: 276 ---GAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNG 332

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             + +L+ F  + +E +  P+ +T V VL+AC+   M+  G     V+     +      
Sbjct: 333 WPQESLRLFFAMNLEGT-KPSGVTLVSVLNACS---MLQVGSATAFVLEQAMEVVSATRD 388

Query: 379 Y---GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
                 L+   AR+ ++  A     +    PD V W ++  A  + H S
Sbjct: 389 NVLGTTLLTTYARSNDLPRA-RATFDAIQSPDVVSWNAMAAAYLQHHRS 436


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 331/602 (54%), Gaps = 21/602 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRT---ALPQQHKTLLIYSR 73
           +F+  R  G   N  +L S L     +  +   K IH  A++T     P     LL    
Sbjct: 250 VFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDM-- 307

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
              +A   D+  A   F  I   +    + +I   A+S +   QA  LF R++ + +VLP
Sbjct: 308 ---YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQS-NQNEQAFELFLRLM-RSSVLP 362

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           ++++    L+AC  +     GKQ H H  K G  SD+++ N+L+ FYA C  +D + K+F
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLS 252
            ++ + + VSWN ++  F Q G  + AL +F  MQ    P    T+ S+  ACA  A++ 
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
                H  I +    +   D ++ NSLID Y KCG +  A +VF+ + +RD+ SWN+II 
Sbjct: 483 HAGQIHCSIEKS---TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIIS 539

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+ALHG+A  AL+ FDR+  + +   N ITFV +LS C+  G+V+ G   FD M  ++ I
Sbjct: 540 GYALHGQAADALELFDRMN-KSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGI 598

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P +EHY C+V LL RAG +++AL  + ++P  P A++WR+LL +C   H +V L    A
Sbjct: 599 KPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII-HKNVALGRFSA 657

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           ++++E E       YVLLS +YA+A   + V L+RK M + GV K PG S +EI G  H 
Sbjct: 658 EKILEIEPQD-ETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHA 716

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F  G   HP  + I   L+ ++ K    GY PD +   + D   + K   L +HSERLA+
Sbjct: 717 FSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDIN-VVLHDVDKEQKTRMLWVHSERLAL 775

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++   PG PIR+ KNLR C DCH    +IS+I   EIIVRD  RFHHF+DG CSC D
Sbjct: 776 AYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGD 835

Query: 613 YW 614
           YW
Sbjct: 836 YW 837



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 16/272 (5%)

Query: 132 LPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLD 187
           +P   +F  A  L+ C        G+  H H+ +RG V   D++  N L++ Y   G L 
Sbjct: 54  VPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLA 113

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
            A ++FD M ER++VS+  ++ A  Q G+F++A  LFRR++    E + +   ++     
Sbjct: 114 SARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAI 173

Query: 247 GL--ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
            +  A L+ G+ + A+ L H DH    +  V + LID Y  C  +  A  VF  + ++D 
Sbjct: 174 AMDAAGLAGGVHSCAWKLGH-DH----NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
             W +++  ++ +   E A + F ++ V     PN      VL A      V  G+    
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRV-SGCKPNPFALTSVLKAAVCLPSVVLGKGIHG 287

Query: 365 VMINEYNITPVLEHY-GCLVDLLARAGNIDEA 395
             I   N T    H  G L+D+ A+ G+I +A
Sbjct: 288 CAIKTLNDTE--PHVGGALLDMYAKCGDIKDA 317


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 306/536 (57%), Gaps = 16/536 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           LD A +VF  + + +   WN LI  C+       +A  +F  + ++G +  ++ T    L
Sbjct: 354 LDDAMKVFDWMSHRDLILWNALISGCSHG-GRHDEAFSIFYGLRKEG-LGVNRTTLAAVL 411

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K+ A L A S  +Q HA   K G + D ++ N LI  Y  C  L  A +VF+      ++
Sbjct: 412 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 471

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +   MI A  Q    + A+KLF  M +   EPD +   S+ +ACA L+    G   HA++
Sbjct: 472 AVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++      ++D    N+L+  Y KCGS++ A   F S+P+R + SW+++I G A HG  +
Sbjct: 532 IKR---QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F R+V +E  +PN IT   VL ACNH G+V E + YF+ M   + I    EHY C
Sbjct: 589 RALELFGRMV-DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 647

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESE 439
           ++DLL RAG +D+A+ LV++MP + +A +W +LL A  + H    L +  A++  ++E E
Sbjct: 648 MIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS-RVHKDPELGKLAAEKLFILEPE 706

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG +VLL+  YAS+  WN+V  VRKLM D  + KEP  S +E+    H F  GD S
Sbjct: 707 K---SGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKS 763

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILN 558
           HP TK+IY  LD + + +   GY P+      + +LD   K+  L  HSERLA+A  +L+
Sbjct: 764 HPMTKEIYSKLDELGDLMSKAGYIPNVD--VDLHDLDRSEKELLLSHHSERLAVAFALLS 821

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG PIRV KNLR+C+DCH   K IS I + EII+RD  RFHHF+DG+CSC DYW
Sbjct: 822 TPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 162/336 (48%), Gaps = 15/336 (4%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKA 144
           A RVF +I +P   +W++L+   A S +  P+ AI  F  M  +G V  ++   P  LK 
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVT--AYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC 112

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVS 203
                    G Q HA     G  SDV++ N+L+  Y   G +D A +VFD    ER+ VS
Sbjct: 113 VP---DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS 169

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN ++ A+V+  +   A+++F  M     +P  + F  + +AC G   +  G   HA ++
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 229

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           R        DV   N+L+DMY K G +DIA  +FE MP  D+ SWN++I G  L+G    
Sbjct: 230 R---MGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A++   ++       PN      +L AC   G    GR     MI     +      G L
Sbjct: 287 AIELLLQM-KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-L 344

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           VD+ A+   +D+A+ +   M  + D ++W +L+  C
Sbjct: 345 VDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 379



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL-KQIHAQALRTALPQQHKTLLIYSRIIHFAS 79
           F+  R EG   N  +L   L +C   +QL  Q+HA A+ T         +  + +  +  
Sbjct: 91  FHGMRAEGVCCNEFALPVVL-KCVPDAQLGAQVHAMAMATGFGSD--VFVANALVAMYGG 147

Query: 80  FADLDYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           F  +D A RVF +  +  N+ +WN L+ A  ++ D    AI +F  M+  G + P +  F
Sbjct: 148 FGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN-DQCGDAIQVFGEMVWSG-IQPTEFGF 205

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              + AC        G+Q HA + + G   DV+  N+L+  Y   G +D+A+ +F+ M +
Sbjct: 206 SCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD 265

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWA 257
             +VSWN +I   V  G    A++L  +M+     P+ +   SI  ACAG     LG   
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 325

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           H ++++    S   D  +   L+DMY K   LD A +VF+ M  RDL  WN++I G +  
Sbjct: 326 HGFMIKANADS---DDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           GR + A   F  L  +E    N  T   VL +
Sbjct: 383 GRHDEAFSIFYGL-RKEGLGVNRTTLAAVLKS 413



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 167/383 (43%), Gaps = 11/383 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S ++++ T  +++   +Q+HA  +R  +  +       + +  +     +D A  +F ++
Sbjct: 206 SCVVNACTGSRNIDAGRQVHAMVVR--MGYEKDVFTANALVDMYVKMGRVDIASVIFEKM 263

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  +WN LI  C  +     +AI L  +M   G ++P+       LKACA   AF  
Sbjct: 264 PDSDVVSWNALISGCVLN-GHDHRAIELLLQMKSSG-LVPNVFMLSSILKACAGAGAFDL 321

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H  + K    SD YI   L+  YA    LD A KVFD M  R L+ WN +I     
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSH 381

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G  D A  +F  ++      +  T  ++  + A L   S     HA   +      + D
Sbjct: 382 GGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEK---IGFIFD 438

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V N LID Y KC  L  A +VFE     D+ +  S+I   +     E A+K F  + +
Sbjct: 439 AHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEM-L 497

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   P+      +L+AC       +G+     +I    ++        LV   A+ G+I
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSI 556

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
           ++A    S++P +   V W +++
Sbjct: 557 EDAELAFSSLPER-GVVSWSAMI 578



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 11/270 (4%)

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A   G   HA++ K G ++   + N LI FY+ C     A +VFD + +   VSW+ ++ 
Sbjct: 19  ALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A+   G   SA++ F  M+            +   C  +    LG   HA  +       
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC--VPDAQLGAQVHAMAMA---TGF 131

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVF-ESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            +DV V N+L+ MY   G +D AR+VF E+  +R+  SWN ++  +  + +   A++ F 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            + V     P    F  V++AC     +  GR     M+        +     LVD+  +
Sbjct: 192 EM-VWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVK 249

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G +D A  +   MP   D V W +L+  C
Sbjct: 250 MGRVDIASVIFEKMP-DSDVVSWNALISGC 278


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 298/525 (56%), Gaps = 24/525 (4%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P++F  N ++R+  R  DA     + F R         +  +    L  C    A +  +
Sbjct: 95  PSTFRLNAILRSL-RGPDA-----LRFLRRARALGRRGNAFSLSIVLGHCR---ALAHAR 145

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HA++   G   D  +  SL+  YA+CG  D A KVFD M  R  ++WNV+I  + +  
Sbjct: 146 QLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNR 205

Query: 216 EFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLV 270
               ALKLF  M   +   EPD  T   +  AC  L  L  G  +W +A      DH   
Sbjct: 206 RTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAV-----DHGYG 260

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            ++ V NSLI MY KCG +D A QVF   PK+ + +W+++I G A +G  + A+  F+ +
Sbjct: 261 GELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEM 320

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                 +P+  TF GVLSAC+H G+V EG  +FD+M  EY + P + HYGC+VDL+ RAG
Sbjct: 321 G-RSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAG 379

Query: 391 NIDEALHLV-SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
            +D+A  LV  +M + PDA IWR+LL AC + H  + L E V   +IE +    +G YVL
Sbjct: 380 LLDQAYELVVKDMRVAPDATIWRTLLGAC-RIHGHIDLGERVINHLIELKAQQ-AGDYVL 437

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L   YA+   W  V  VRKLM +KG+   PGC+++E++G  HEF A D SHP+  +IY  
Sbjct: 438 LLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEK 497

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           LD I++ L+  GY P+ S + + D   +GK+ +L  HSE+LAIA  +L      PIR+ K
Sbjct: 498 LDEINKHLRIAGYVPNVS-SELHDLDSEGKECALAYHSEKLAIAFALLVTPQHRPIRLAK 556

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH  TK+ S +++  +IVRDR RFHHFK+  CSC DYW
Sbjct: 557 NLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 149/334 (44%), Gaps = 10/334 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           N  SL   L  C++++  +Q+HA  +  A       LL  S +  +A+  D D A +VF 
Sbjct: 127 NAFSLSIVLGHCRALAHARQLHANVV--AEGHSPDALLATSLVSSYAACGDGDSARKVFD 184

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN-VLPDKHTFPFALKACAYLFA 150
           ++   ++  WN LI    R+   K  A+ LF  M    N   PD  T    L+AC  L A
Sbjct: 185 EMPVRDTIAWNVLITCYTRNRRTK-DALKLFDAMRGGENGAEPDDVTCILLLQACTSLGA 243

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G++   +    G   ++ + NSLI  Y  CG +D A +VF    ++S+V+W+ MI  
Sbjct: 244 LDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISG 303

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
               G    A+  F  M +    PD  TF  + SAC+    +  G     + +   ++ L
Sbjct: 304 LASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGF--KFFDIMCYEYQL 361

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQ--VFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
             +V     ++D+  + G LD A +  V +     D T W +++    +HG  +   +  
Sbjct: 362 KPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVI 421

Query: 328 DRLV-VEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + L+ ++   + + +  +   +A    G V+E R
Sbjct: 422 NHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVR 455


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/649 (35%), Positives = 343/649 (52%), Gaps = 67/649 (10%)

Query: 20  IFNNNRNE-GSFNNHSSLLSSLTECKSM---SQLKQIHAQALRTALPQQHKTLLIYSRII 75
           +F+   NE G   ++ +L++ L  C S+   S  KQ+H  A+ + + Q    + + + ++
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQN---MFVGNCLV 271

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ------ 128
             +A    +D A  VF  +   +  +WN ++ A    +     A+ LF++M E+      
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMV-AGYSQIGRFEDAVRLFEKMQEEKIKMDV 330

Query: 129 ----------------------------GNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
                                         + P++ T    L  CA + A   GK+ H +
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 161 -------IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAF 211
                  + K G   +  + N LI  YA C  +D A  +FD++   ER +V+W VMI  +
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 212 VQFGEFDSALKLFRRMQILFE------PDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
            Q G+ + AL+L   M   FE      P+ +T      ACA LA L +G   HAY LR+ 
Sbjct: 451 SQHGDANKALELLSEM---FEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ 507

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            +++   + V+N LIDMY KCGS+  AR VF++M  ++  +W S++ G+ +HG  E AL 
Sbjct: 508 QNAV--PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALG 565

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            FD +     F  + +T + VL AC+H GM+ +G +YF+ M   + ++P  EHY CLVDL
Sbjct: 566 IFDEMR-RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDL 624

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG ++ AL L+  MPM+P  V+W + L +CC+ H  V L E  A+++ E       G
Sbjct: 625 LGRAGRLNAALRLIEEMPMEPPPVVWVAFL-SCCRIHGKVELGEYAAEKITELASNH-DG 682

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
            Y LLS +YA+A RW DV  +R LM  KGV K PGCS +E       FF GD +HP  K+
Sbjct: 683 SYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKE 742

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           IY  L    +++K  GY P+ +  A+ D  D+ K   L  HSE+LA+A GIL    G  I
Sbjct: 743 IYQVLLDHMQRIKDIGYVPE-TGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAI 801

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+ KNLRVC DCH     +SRI + +II+RD +RFHHFK+GSCSC  YW
Sbjct: 802 RITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 197/418 (47%), Gaps = 51/418 (12%)

Query: 42  ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTW 101
           +CK++SQ+K IH + L   +   + T  + S  I     +      R F    +   + W
Sbjct: 37  KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRF-PPSDAGVYHW 95

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N+LIR+   +  A  + + LF  M    +  PD +TFPF  KAC  + +   G+ AHA  
Sbjct: 96  NSLIRSYGDNGCAN-KCLYLFGLM-HSLSWTPDNYTFPFVFKACGEISSVRCGESAHALS 153

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
              G +S+V++ N+L+  Y+ C  L  A KVFD M    +VSWN +I+++ + G+   AL
Sbjct: 154 LVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVAL 213

Query: 222 KLFRRMQILF--EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           ++F RM   F   PD  T  ++   CA L T SLG   H + +      ++ ++ V N L
Sbjct: 214 EMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAV---TSEMIQNMFVGNCL 270

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE----- 334
           +DMY KCG +D A  VF +M  +D+ SWN+++ G++  GR E A++ F+++  E+     
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330

Query: 335 -----------------------------SFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
                                           PN +T + VLS C   G +  G++    
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 366 MINEYNITPVLEHYG-------CLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLL 415
            I +Y I      +G        L+D+ A+   +D A  +  ++ P + D V W  ++
Sbjct: 391 AI-KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMI 447


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 338/574 (58%), Gaps = 16/574 (2%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYAFRVFYQIENPNSFTW 101
           K + Q K  HAQ L   L    KT L+ S I+   ++    +D+A +VF ++ + +  +W
Sbjct: 78  KLLLQGKACHAQILLMGL----KTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           NT+I +  ++ + + +A+ L  +M  +G    +  T    L ACA   A S+ +  HA  
Sbjct: 134 NTMIGSLTQNGE-ENEALDLLLQMQREGTPFSE-FTISSVLCACAAKCALSECQLLHAFA 191

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K  +  +V++  +L+  YA CG +  A  VF++M +RS+V+W+ M   +VQ   ++ AL
Sbjct: 192 IKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQAL 251

Query: 222 KLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
            LFR+  +   + D +   S+  ACAGLA +  G   +A + +       +++ V +SLI
Sbjct: 252 ALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKS---GFCSNIFVASSLI 308

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG ++ + +VF  + KR++  WN++I G + H R+   +  F+++  +   SPN 
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ-QMGLSPND 367

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +TFV VLSAC H G+V +G+ YFD+M  E+++ P + HY C+VD L+RAG I EA  L+S
Sbjct: 368 VTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
            +P    A +W SLL A C+ H ++ L+E  AK++ + E    SG Y+LLS +YA+  +W
Sbjct: 428 KLPFNASASMWGSLL-ASCRTHGNLELAEVAAKKLFDIEPHN-SGNYLLLSNMYAANGKW 485

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
           ++V  +RKL+ +  V KE G S IEI    H F  G+ +HP+  +IY  L+ + ++L+  
Sbjct: 486 DEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKL 545

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY  + +Q  +    +  KQ  LR HSE+LA  +G+L L P  PIR+ KNLR+C DCH  
Sbjct: 546 GYKVE-TQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KL S+ F  ++IVRD  RFHHFK+G CSC D+W
Sbjct: 605 MKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 338/574 (58%), Gaps = 16/574 (2%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYAFRVFYQIENPNSFTW 101
           K + Q K  HAQ L   L    KT L+ S I+   ++    +D+A +VF ++ + +  +W
Sbjct: 78  KLLLQGKACHAQILLMGL----KTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           NT+I +  ++ + + +A+ L  +M  +G    +  T    L ACA   A S+ +  HA  
Sbjct: 134 NTMIGSLTQNGE-ENEALDLLLQMQREGTPFSE-FTISSVLCACAAKCALSECQLLHAFA 191

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K  +  +V++  +L+  YA CG +  A  VF++M +RS+V+W+ M   +VQ   ++ AL
Sbjct: 192 IKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQAL 251

Query: 222 KLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
            LFR+  +   + D +   S+  ACAGLA +  G   +A + +       +++ V +SLI
Sbjct: 252 ALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKS---GFCSNIFVASSLI 308

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG ++ + +VF  + KR++  WN++I G + H R+   +  F+++  +   SPN 
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ-QMGLSPND 367

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           +TFV VLSAC H G+V +G+ YFD+M  E+++ P + HY C+VD L+RAG I EA  L+S
Sbjct: 368 VTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
            +P    A +W SLL A C+ H ++ L+E  AK++ + E    SG Y+LLS +YA+  +W
Sbjct: 428 KLPFNASASMWGSLL-ASCRTHGNLELAEVAAKKLFDIEPHN-SGNYLLLSNMYAANGKW 485

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
           ++V  +RKL+ +  V KE G S IEI    H F  G+ +HP+  +IY  L+ + ++L+  
Sbjct: 486 DEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKL 545

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY  + +Q  +    +  KQ  LR HSE+LA  +G+L L P  PIR+ KNLR+C DCH  
Sbjct: 546 GYKVE-TQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KL S+ F  ++IVRD  RFHHFK+G CSC D+W
Sbjct: 605 MKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 347/600 (57%), Gaps = 21/600 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           FNN +  G+   H++  S +  C S+ +L   + +H + L++ L      L   + ++  
Sbjct: 292 FNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLT--ALMVAL 349

Query: 78  ASFADLDYAFRVFYQIENPNSF-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
               ++D AF +F  +    S  +W  +I    ++ D   QA+ LF  M  +G V P+  
Sbjct: 350 TKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTD-QAVNLFSLMRREG-VKPNHF 407

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T+   L     +F      + HA + K        +  +L+  +   G++  A KVF+ +
Sbjct: 408 TYSTILTVQHAVFI----SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELI 463

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC-AGLATLSLG 254
             + +++W+ M+  + Q GE + A K+F ++ +   +P+ +TF SI +AC A  A++  G
Sbjct: 464 ETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQG 523

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              HAY ++     L   + V++SL+ +Y K G+++ A ++F+   +RDL SWNS+I G+
Sbjct: 524 KQFHAYAIKL---RLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGY 580

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HG+A+ AL+ F+ +  + +   ++ITF+GV+SAC H G+V +G++YF++MIN+++I P
Sbjct: 581 AQHGQAKKALEVFEEMQ-KRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINP 639

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
            +EHY C++DL +RAG + +A+ +++ MP  P A +WR +L A  + H ++ L +  A++
Sbjct: 640 TMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVL-AASRVHRNIELGKLAAEK 698

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           +I  E    S  YVLLS +YA+A  W++   VRKLM  + V KEPG S IE+    + F 
Sbjct: 699 IISLEPQ-HSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFL 757

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
           AGD SHP +  IY  L  ++ +L+  GY PD +     D  D+ K++ L  HSERLAIA 
Sbjct: 758 AGDLSHPLSDHIYSKLSELNTRLRDVGYQPD-TNYVFHDIEDEQKETILSHHSERLAIAF 816

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G++   P +P+++ KNLRVC DCH   KL+S +    I+VRD  RFHHFK G CSC DYW
Sbjct: 817 GLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
           D   +A+ LF  +   G + PD +T    L  CA  F  + G+Q H    K GLV  + +
Sbjct: 81  DQTQEALHLFVSLYRSG-LSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSV 139

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
            NSL+  Y   G++    +VFD M +R +VSWN ++  +      D   +LF  MQ+  +
Sbjct: 140 GNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGY 199

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
            PD YT  ++ +A A    +++GM  HA +++       T+ LV NSLI M  K G L  
Sbjct: 200 RPDYYTVSTVIAALANQGAVAIGMQIHALVVK---LGFETERLVCNSLISMLSKSGMLRD 256

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           AR VF++M  +D  SWNS+I G  ++G+   A + F+ + +  +  P   TF  V+ +C
Sbjct: 257 ARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA-KPTHATFASVIKSC 314



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 198/424 (46%), Gaps = 30/424 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S+++++L    +++   QIHA  ++     +   L+  S I   +    L  A  VF  +
Sbjct: 207 STVIAALANQGAVAIGMQIHALVVKLGFETER--LVCNSLISMLSKSGMLRDARVVFDNM 264

Query: 94  ENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           EN +S +WN++I      ++ +  +A   F  M +     P   TF   +K+CA L    
Sbjct: 265 ENKDSVSWNSMI--AGHVINGQDLEAFETFNNM-QLAGAKPTHATFASVIKSCASLKELG 321

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAF 211
             +  H    K GL ++  +  +L+     C  +D A  +F  M   +S+VSW  MI  +
Sbjct: 322 LVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGY 381

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           +Q G+ D A+ LF  M+    +P+ +T+ +I +    +    +    HA +++    +  
Sbjct: 382 LQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEI----HAEVIK---TNYE 434

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               V  +L+D + K G++  A +VFE +  +D+ +W++++ G+A  G  E A K F +L
Sbjct: 435 KSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQL 494

Query: 331 VVEESFSPNSITFVGVLSACNH-RGMVSEGRDYFDVMINEYNITPVLEHYGC----LVDL 385
              E   PN  TF  +++AC      V +G+ +     + Y I   L +  C    LV L
Sbjct: 495 -TREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTL 548

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGI 442
            A+ GNI+ A H +     + D V W S++       +   ++ + EE+ K+ +E +   
Sbjct: 549 YAKRGNIESA-HEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAIT 607

Query: 443 CSGV 446
             GV
Sbjct: 608 FIGV 611



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 48/270 (17%)

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
            A ++FD    R L   N ++  + +  +   AL LF  + +    PD YT   + S CA
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
           G    ++G   H   ++ C   LV  + V NSL+DMY K G++   R+VF+ M  RD+ S
Sbjct: 114 GSFNGTVGEQVHCQCVK-C--GLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVS 170

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA----------------- 349
           WNS++ G++ +   +   + F  + VE  + P+  T   V++A                 
Sbjct: 171 WNSLLTGYSWNRFNDQVWELFCLMQVE-GYRPDYYTVSTVIAALANQGAVAIGMQIHALV 229

Query: 350 -----------CN-------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                      CN         GM+ + R  FD M N+ +++     +  ++      G 
Sbjct: 230 VKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVS-----WNSMIAGHVINGQ 284

Query: 392 IDEALHLVSNMPM---KPDAVIWRSLLDAC 418
             EA    +NM +   KP    + S++ +C
Sbjct: 285 DLEAFETFNNMQLAGAKPTHATFASVIKSC 314


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/592 (35%), Positives = 325/592 (54%), Gaps = 16/592 (2%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           EG   + ++LLS L  C  +  L   + +H  +++T    Q  T L    +  +++ +D 
Sbjct: 291 EGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQ--TSLANVLLDMYSNCSDW 348

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
               ++F  +   N  +W  +I +  R+     +   LFQ M  +G   PD      AL 
Sbjct: 349 RSTNKIFRNMVQKNVVSWTAMITSYTRA-GLYDKVAGLFQEMGLEG-TRPDIFAITSALH 406

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A A       GK  H +  + G+   + + N+L+  Y  CG+++ A  +FD ++ + ++S
Sbjct: 407 AFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMIS 466

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           WN +I  + +    + A  LF  M +   P+  T   I  A A L++L  G   HAY LR
Sbjct: 467 WNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALR 526

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                 + D  V N+LIDMY KCG+L +AR++F+ +  ++L SW  ++ G+ +HGR   A
Sbjct: 527 R---GYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDA 583

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           +  F+++ V    +P++ +F  +L AC+H G+  EG  +FD M  E+ I P L+HY C+V
Sbjct: 584 IALFEQMRVS-GIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMV 642

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL   GN+ EA   + +MP++PD+ IW SLL  C + H +V L+EEVA++V E E    
Sbjct: 643 DLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGC-RIHRNVKLAEEVAERVFELEPE-N 700

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +G YVLL+ +YA A RW  V  ++  +  +G+ +  GCS IE  G  H F A + +HPQ 
Sbjct: 701 TGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQG 760

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPG 562
            +I  FL+ + ++++  G+ P    A M  D    G+  +L  HS +LA+A G+LNL  G
Sbjct: 761 TRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGE--ALCGHSSKLAVAFGVLNLSEG 818

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             IRV KN RVC  CHE  K IS++ + EII+RD  RFHHF+ G CSC  YW
Sbjct: 819 RLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 179/387 (46%), Gaps = 11/387 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQH-KTLLIYSRIIHFASFADLDYAFRVF 90
           ++ ++L   +E +S+   K+ H     ++L +     +L    ++ +    DL+ A RVF
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVF 152

Query: 91  YQIENPNSF-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            ++   +    W  L+   A++ D + + ++LF++M   G V PD +T    LK  A L 
Sbjct: 153 DEMPQVSDVRVWTALMSGYAKAGDLR-EGVLLFRKMHCCG-VRPDAYTISCVLKCIAGLG 210

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           +   G+  H  + K G  S   + N+L+ FYA       A  VFD M  R ++SWN MI 
Sbjct: 211 SIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMIS 270

Query: 210 AFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
                G +D A++LF RM +  E  D  T  S+  ACA L  L LG   H Y ++     
Sbjct: 271 GCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVK---TG 327

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            ++   + N L+DMY  C       ++F +M ++++ SW ++I  +   G  +     F 
Sbjct: 328 FISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQ 387

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            + +E +  P+       L A     ++  G+      I    +  VL     L+++  +
Sbjct: 388 EMGLEGT-RPDIFAITSALHAFAGNELLKHGKSVHGYAIRN-GMEKVLAVTNALMEMYVK 445

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            GN++EA  L+ +  +  D + W +L+
Sbjct: 446 CGNMEEA-KLIFDGVVSKDMISWNTLI 471


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 326/586 (55%), Gaps = 20/586 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQH----KTLLIYSRIIHFASFADLDYAFRV 89
           SS+LS+ TE  S    +Q+H+ ALR  L          + +Y++  +  S   L  A  V
Sbjct: 259 SSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQS---LHNAREV 315

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++   N   W  L+    +      Q ++LF +M+ +G + P+  T+   LKACA L 
Sbjct: 316 FNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG-IRPNHITYSSMLKACANLG 374

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G+Q H H  K  L     + N+L+  YA  G ++ A   FD + E+++VS++  +D
Sbjct: 375 DQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLD 434

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
              +   +        RM++      +TF S+ SA A +  L+ G   HA  L+      
Sbjct: 435 GDGRSNTYQD--YQIERMELGIST--FTFGSLISAAASVGMLTKGQRLHALSLKA---GF 487

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            +D  + NSL+ MY +CG L  A QVF+ M   ++ SW S+I G A HG A  AL+ F  
Sbjct: 488 GSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHD 547

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++      PN +T++ VLSAC+H G+V EG+++F +M   + + P +EHY C+VDLL R+
Sbjct: 548 MIAA-GVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRS 606

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G +++AL  ++ MP + DA++W++LL A CK H ++ + E  A  VI+ E       YVL
Sbjct: 607 GLVEDALDFINEMPCQVDALVWKTLLGA-CKTHNNMDIGEIAANHVIQLEPQD-PAPYVL 664

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YA A  W+ V  +R LM DK + KE G S + +D   HEF AGDTSHPQ ++IY  
Sbjct: 665 LSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTK 724

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM-PIRVF 568
           L+ +  ++K  GY PD S   + D  D+ K+  L  HSE++A+A G+++      PIR+F
Sbjct: 725 LETLIREIKVMGYVPDTS-VVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIF 783

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH   K +S+    EII+RD  RFH  KDG CSC +YW
Sbjct: 784 KNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 155/305 (50%), Gaps = 14/305 (4%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC--AYLFAFSQGKQA 157
           +W T + +C     A+ +A+ LF   +E+G +LP+  T   A +AC  + LF  + G   
Sbjct: 119 SW-TAMASCLSRNGAEAEALRLFGETLEEG-LLPNAFTLCAATQACFASELFHLA-GGAV 175

Query: 158 HAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
              +FK G   +DV +  +LI  +A  G L    +VFD + ER++V W ++I  + Q G 
Sbjct: 176 LGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGY 235

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
            D A++LF  M +  F+PD YT  S+ SAC  L +  LG   H+  LR     L +D  V
Sbjct: 236 SDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALR---LGLESDSCV 292

Query: 276 NNSLIDMYCKC---GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           +  L+DMY K     SL  AR+VF  MPK ++ +W +++ G+   G  +  +      ++
Sbjct: 293 SCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKML 352

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            E   PN IT+  +L AC + G    GR      +   N+  +      LV + A +G+I
Sbjct: 353 NEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKS-NLADLNVVGNALVSMYAESGSI 411

Query: 393 DEALH 397
           +EA H
Sbjct: 412 EEARH 416


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/564 (37%), Positives = 322/564 (57%), Gaps = 18/564 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFR 88
           +N +S LL   T    + Q + +HA  + +     H  L++ + I++ +A    LD A R
Sbjct: 87  YNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNH--LVLQNIIVNMYAKCGCLDDARR 144

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +F ++   +  TW  LI     S + +P+ A++LF +M+  G + P+  T    LKA   
Sbjct: 145 MFDEMPTKDMVTWTALI--AGFSQNNRPRDALLLFPQMLRLG-LQPNHFTLSSLLKASGS 201

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                 G Q HA   K G  S VY+ ++L+  YA CGH+D A   FD M  +S VSWN +
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I    + GE + AL L  +MQ   F+P  +T+ S+ SACA +  L  G W HA++++   
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKS-- 319

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L     + N+L+DMY K GS+D A++VF+ + K D+ SWN+++ G A HG  +  L  
Sbjct: 320 -GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F++++      PN I+F+ VL+AC+H G++ EG  YF++M  +Y + P + HY   VDLL
Sbjct: 379 FEQML-RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLL 436

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            R G +D A   +  MP++P A +W +LL AC + H ++ L    A++  E +    SG 
Sbjct: 437 GRVGLLDRAERFIREMPIEPTAAVWGALLGAC-RMHKNMELGVYAAERAFELDPHD-SGP 494

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            +LLS +YASA RW DV  VRK+M + GV K+P CS +EI+   H F A D +HPQ K+I
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEI 554

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
            G  + I  K+K  GY PD S   + VD+ +  ++  L+ HSE+LA+A  +LN   G PI
Sbjct: 555 RGKWEEISGKIKEIGYVPDTSHVLLFVDQQE--REEKLQYHSEKLALAFALLNTPTGSPI 612

Query: 566 RVFKNLRVCKDCHEVTKLISRIFN 589
           R+ KN+RVC DCH   K +S+I+ 
Sbjct: 613 RIKKNIRVCGDCHAAIKFVSKIYE 636



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 157/298 (52%), Gaps = 8/298 (2%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD-VYINNSLIHFYASC 183
           +I++G+++PD + +   LK C  L    QG+  HAH+     + + + + N +++ YA C
Sbjct: 77  LIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC 136

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSIT 242
           G LD A ++FD M  + +V+W  +I  F Q      AL LF +M ++  +P+ +T  S+ 
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLL 196

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            A      L  G   HA+ L++   S    V V ++L+DMY +CG +D A+  F+ MP +
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQS---SVYVGSALVDMYARCGHMDAAQLAFDGMPTK 253

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
              SWN++I G A  G  E AL    ++   ++F P   T+  V SAC   G + +G+  
Sbjct: 254 SEVSWNALISGHARKGEGEHALHLLWKM-QRKNFQPTHFTYSSVFSACASIGALEQGKWV 312

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              MI    +  +      L+D+ A+AG+ID+A  +   + +KPD V W ++L  C +
Sbjct: 313 HAHMIKS-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQ 368


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 306/536 (57%), Gaps = 16/536 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           LD A +VF  + + +   WN LI  C+       +A  +F  + ++G +  ++ T    L
Sbjct: 261 LDDAMKVFDWMSHRDLILWNALISGCSHG-GRHDEAFSIFYGLRKEG-LGVNRTTLAAVL 318

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K+ A L A S  +Q HA   K G + D ++ N LI  Y  C  L  A +VF+      ++
Sbjct: 319 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 378

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +   MI A  Q    + A+KLF  M +   EPD +   S+ +ACA L+    G   HA++
Sbjct: 379 AVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 438

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++      ++D    N+L+  Y KCGS++ A   F S+P+R + SW+++I G A HG  +
Sbjct: 439 IKR---QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 495

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F R+V +E  +PN IT   VL ACNH G+V E + YF+ M   + I    EHY C
Sbjct: 496 RALELFGRMV-DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 554

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESE 439
           ++DLL RAG +D+A+ LV++MP + +A +W +LL A  + H    L +  A++  ++E E
Sbjct: 555 MIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS-RVHKDPELGKLAAEKLFILEPE 613

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG +VLL+  YAS+  WN+V  VRKLM D  + KEP  S +E+    H F  GD S
Sbjct: 614 K---SGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKS 670

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILN 558
           HP TK+IY  LD + + +   GY P+      + +LD   K+  L  HSERLA+A  +L+
Sbjct: 671 HPMTKEIYSKLDELGDLMSKAGYIPNVD--VDLHDLDRSEKELLLSHHSERLAVAFALLS 728

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG PIRV KNLR+C+DCH   K IS I + EII+RD  RFHHF+DG+CSC DYW
Sbjct: 729 TPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 156/328 (47%), Gaps = 12/328 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL-KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           R EG   N  +L   L +C   +QL  Q+HA A+ T         +  + +  +  F  +
Sbjct: 2   RAEGVCCNEFALPVVL-KCVPDAQLGAQVHAMAMATGFGSD--VFVANALVAMYGGFGFM 58

Query: 84  DYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           D A RVF +  +  N+ +WN L+ A  ++ D    AI +F  M+  G + P +  F   +
Sbjct: 59  DDARRVFDEAGSERNAVSWNGLMSAYVKN-DQCGDAIQVFGEMVWSG-IQPTEFGFSCVV 116

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC        G+Q HA + + G   DV+  N+L+  Y   G +D+A+ +F+ M +  +V
Sbjct: 117 NACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 176

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN +I   V  G    A++L  +M+     P+ +   SI  ACAG     LG   H ++
Sbjct: 177 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 236

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++    S   D  +   L+DMY K   LD A +VF+ M  RDL  WN++I G +  GR +
Sbjct: 237 IKANADS---DDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSA 349
            A   F  L  +E    N  T   VL +
Sbjct: 294 EAFSIFYGL-RKEGLGVNRTTLAAVLKS 320



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 167/383 (43%), Gaps = 11/383 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S ++++ T  +++   +Q+HA  +R  +  +       + +  +     +D A  +F ++
Sbjct: 113 SCVVNACTGSRNIDAGRQVHAMVVR--MGYEKDVFTANALVDMYVKMGRVDIASVIFEKM 170

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  +WN LI  C  +     +AI L  +M   G ++P+       LKACA   AF  
Sbjct: 171 PDSDVVSWNALISGCVLN-GHDHRAIELLLQMKSSG-LVPNVFMLSSILKACAGAGAFDL 228

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H  + K    SD YI   L+  YA    LD A KVFD M  R L+ WN +I     
Sbjct: 229 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSH 288

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G  D A  +F  ++      +  T  ++  + A L   S     HA   +      + D
Sbjct: 289 GGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEK---IGFIFD 345

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V N LID Y KC  L  A +VFE     D+ +  S+I   +     E A+K F  + +
Sbjct: 346 AHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEM-L 404

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   P+      +L+AC       +G+     +I    ++        LV   A+ G+I
Sbjct: 405 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSI 463

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
           ++A    S++P +   V W +++
Sbjct: 464 EDAELAFSSLPER-GVVSWSAMI 485


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 342/608 (56%), Gaps = 23/608 (3%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLI 70
           Q  +  +F+++R   +  + S+  + +  C ++ QL   +Q+H+  L+      H    +
Sbjct: 283 QLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGF---HSDGNV 339

Query: 71  YSRIIH-FASFADLDYAFRVFYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
            + I+  ++   +LD AF +F  +  + N  +W  +I  C ++ D  P A  LF RM E 
Sbjct: 340 MTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADI-PLAAALFSRMRED 398

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            NV P++ T+   L A   +       Q HA I K        +  +L+  Y+  G+ + 
Sbjct: 399 -NVKPNEFTYSTVLTASIPILL----PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEE 453

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A  +F  +  + +V+W+ M+  + Q G+ D A  +F +M +   +P+ +T  S   ACA 
Sbjct: 454 ALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACAS 513

Query: 248 -LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
             A +  G   HA  +++        + V ++L+ MY + GS+D AR VFE    RDL S
Sbjct: 514 PTAGIDQGRQFHAISIKY---RYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVS 570

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WNS+I G+A HG ++ AL  F R +       +  TF+ V+  C H G+V EG+ YFD M
Sbjct: 571 WNSMISGYAQHGYSKEALDTF-RQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSM 629

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
           + ++NI+P +EHY C+VDL +RAG +DE ++L+  MP    A++WR+LL A C+ H +V 
Sbjct: 630 VMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGA-CRVHKNVE 688

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           L +  A++++  E    S  YVLLS +YA+A RW +   VRKLM  K V KE GCS I+I
Sbjct: 689 LGKLAAQKLLLLEPDD-SATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQI 747

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
               H F A D SHP ++QIY  L  +  +LK  GY P+ S   + D  ++ K++ L +H
Sbjct: 748 KNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTS-VVLHDIAEEQKETMLVMH 806

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SERLA+A G++   P  P+++ KNLRVC DCH V K++S I + EII+RD +RFHHF  G
Sbjct: 807 SERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAG 866

Query: 607 SCSCMDYW 614
           +CSC D+W
Sbjct: 867 ACSCGDFW 874



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 159/335 (47%), Gaps = 26/335 (7%)

Query: 89  VFYQIENPNSFTWNTLI------RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           VF  +   N  TW +L+      RAC+         + LF RM  +G V P+  TF   L
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACS-------DVMALFFRMRAEG-VWPNPFTFTSVL 208

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            A A   A   G++ HA   K G  S V++ NSLI+ Y+ CG ++ A  VF  M  R +V
Sbjct: 209 SAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMV 268

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SWN ++   +       AL+LF   +  + +    T+ ++   CA L  L+L    H+ +
Sbjct: 269 SWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCV 328

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRA 320
           L+H  HS   D  V  +++D Y KCG LD A  +F  MP  +++ SW ++I G   +   
Sbjct: 329 LKHGFHS---DGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADI 385

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             A   F R+  E++  PN  T+  VL+A      +   + +  ++   Y   P +    
Sbjct: 386 PLAAALFSRM-REDNVKPNEFTYSTVLTASIP---ILLPQIHAQIIKTNYQHAPSVGT-- 439

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            L+   ++ GN +EAL +   +  K D V W ++L
Sbjct: 440 ALLASYSKLGNTEEALSIFKMIDHK-DVVAWSAML 473



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 19/285 (6%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           LK C  +     G+Q H    K G   ++V +  +L+  Y  CG ++    VF+ M +R+
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +V+W  ++  +VQ       + LF RM+     P+ +TF S+ SA A    + LG   HA
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHA 225

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
             ++       + V V NSLI+MY KCG ++ A+ VF  M  RD+ SWN+++ G  L+  
Sbjct: 226 QSVK---FGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEH 282

Query: 320 AEAALKYF-DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-----NEYNIT 373
              AL+ F D        S +  T+  V+  C +   ++  R     ++     ++ N+ 
Sbjct: 283 QLEALQLFHDSRASMAKLSQS--TYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM 340

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
                   ++D  ++ G +D+A ++   MP   + V W +++  C
Sbjct: 341 TA------IMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGC 379



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 193/404 (47%), Gaps = 22/404 (5%)

Query: 19  SIFNNNRNEGSFNN---HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII 75
           ++F   R EG + N    +S+LS++    ++   +++HAQ+++        T+ + + +I
Sbjct: 187 ALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGC---RSTVFVCNSLI 243

Query: 76  HFASFADL-DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +  S   L + A  VF Q+E  +  +WNTL+     + + + +A+ LF         L  
Sbjct: 244 NMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLN-EHQLEALQLFHDSRASMAKL-S 301

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T+   +K CA L   +  +Q H+ + K G  SD  +  +++  Y+ CG LD A  +F 
Sbjct: 302 QSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFL 361

Query: 195 NML-ERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
            M   +++VSW  MI   +Q  +   A  LF RM +   +P+ +T+ ++ +A   +    
Sbjct: 362 LMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQ 421

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           +    HA I++       +   V  +L+  Y K G+ + A  +F+ +  +D+ +W++++ 
Sbjct: 422 I----HAQIIKTNYQHAPS---VGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLS 474

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC-NHRGMVSEGRDYFDVMINEYN 371
            ++  G  + A   F ++ + +   PN  T    + AC +    + +GR +  + I +Y 
Sbjct: 475 CYSQAGDCDGATNVFIKMSM-QGMKPNEFTISSAIDACASPTAGIDQGRQFHAISI-KYR 532

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
               +     LV + AR G+ID A  +V       D V W S++
Sbjct: 533 YQDAICVGSALVTMYARKGSIDSA-RIVFERQTDRDLVSWNSMI 575


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 327/583 (56%), Gaps = 22/583 (3%)

Query: 39  SLTECKSMS---QLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +   C S+S      Q+H   ++T    + +  +  S I  +   + +  A +VF +  +
Sbjct: 62  AFKSCASLSLPLAGSQLHGHVIKTGC--EPEPFVQTSLISMYCKCSTIASARKVFDENHH 119

Query: 96  PNSFT--WNTLIRACARSVDAK-PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
             +    +N LI     S++++   A++LF++M ++G V  +  T    +  CA      
Sbjct: 120 SRNLAVCYNALI--AGYSLNSRFSDAVLLFRQMRKEG-VSVNAVTMLGLIPVCAGPIHLG 176

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G   HA   + GL  D+ + N L+  Y  CG +D A K+FD M E+ L++WN MI  + 
Sbjct: 177 FGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYA 236

Query: 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           Q G     L L+R+M+     PD  T   + S+CA L   + G      I          
Sbjct: 237 QNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELS---GFGF 293

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +  + N+LI+MY +CG+L  AR +F+ M ++++ SW +II G+ +HG+ E A++ FD ++
Sbjct: 294 NPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMI 353

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
             +   P+   FV VLSAC+H G+  +G  YF  M  +Y + P  EHY C+VDLL RAG 
Sbjct: 354 SSDEL-PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++EA  L+ +M ++PD  +W +LL AC K H +V L+E   ++VIE E     G YVLLS
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALLGAC-KIHRNVELAELAFEKVIEFEP-TNIGYYVLLS 470

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +++ A     +  VR +M ++ + KEPGCS +E  G  H F AGD +HPQ ++IY  LD
Sbjct: 471 NIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLD 530

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +++ +K RG + D  Q +  +EL  G    + +HSE+LAIA G++N +PG  I V KNL
Sbjct: 531 GLEDIIKRRGGSNDNDQESRNEELITG----MGVHSEKLAIAFGLINTEPGTEITVIKNL 586

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH   KL+S I + +++VRD  RFHHFK+G CSC DYW
Sbjct: 587 RVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 183/348 (52%), Gaps = 22/348 (6%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WN  +R  AR    + +A+ L+ +M+  G+  P+  TFPFA K+CA L     G Q H 
Sbjct: 23  SWNARLRELARQRHFQ-EALNLYCQMLASGDS-PNAFTFPFAFKSCASLSLPLAGSQLHG 80

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD-NMLERSL-VSWNVMIDAFVQFGEF 217
           H+ K G   + ++  SLI  Y  C  +  A KVFD N   R+L V +N +I  +     F
Sbjct: 81  HVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRF 140

Query: 218 DSALKLFRRMQILFEPDGYTFQSIT-----SACAGLATLSLGMWAHAYILRHCDHSLVTD 272
             A+ LFR+M+     +G +  ++T       CAG   L  G   HA  +R     L  D
Sbjct: 141 SDAVLLFRQMR----KEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVR---FGLDGD 193

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + V N L+ MY +CGS+D AR++F+ MP++ L +WN++I G+A +G A   L  + ++  
Sbjct: 194 LSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEF 253

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLARAGN 391
                P+ +T VGVLS+C H G  + GR+    + ++ +   P L++   L+++ AR GN
Sbjct: 254 -TGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGN 310

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
           + +A  +   M  K + + W +++ A    H    L+ ++  ++I S+
Sbjct: 311 LVKARAIFDGMTEK-NVISWTAII-AGYGMHGQGELAVQLFDEMISSD 356


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/627 (35%), Positives = 353/627 (56%), Gaps = 28/627 (4%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
           M  A  Q G P     S  +F     EG+  +  +L+S L  C SM  +    A  L  A
Sbjct: 190 MISACWQNGWPQ---ESLRLFYAMNLEGTKPSGVTLVSVLNAC-SMLPVGSATAFVLEQA 245

Query: 61  LPQQHKT---LLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP- 116
           +     T   +L  + +  +A   DL  A   F  I++P+  +WN +  A A     +P 
Sbjct: 246 MEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAM--AAAYLQHHRPR 303

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYL---FAFSQGKQAHAHIFKRGLVSDVYIN 173
           +A+VLF+RM+ +G V P   TF  AL ACA      A + GK+  + + + GL  D  + 
Sbjct: 304 EALVLFERMLLEG-VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVA 362

Query: 174 NSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-- 229
           N+ ++ YA CG L  A  VF+ +    R  ++WN M+ A+   G    A +LF+ M+   
Sbjct: 363 NATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEK 422

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
           L +P+  TF ++  A     +++ G   HA ++    +   +D ++ N+L++MY KCGSL
Sbjct: 423 LVKPNKVTFVAVLDASTSRTSIAQGREIHARVV---SNGFESDTVIQNALLNMYAKCGSL 479

Query: 290 DIARQVFE--SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           D A+ +F+  S  + D+ +W S++ G+A +G+AE ALK F   + ++   PN ITF+  L
Sbjct: 480 DDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLF-WTMQQQGVRPNHITFISAL 538

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           +ACNH G + +G +    M  ++ I P  +H+ C+VDLL R G +DEA  L+     + D
Sbjct: 539 TACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QAD 597

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
            + W +LLDAC K    +   E  A+++++ +  + S  Y++L+ +YA+A RWN+   +R
Sbjct: 598 VITWMALLDAC-KNSKELERGERCAERIMQLDPEVASS-YIVLASMYAAAGRWNEAATIR 655

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           K M DKG+  +PGCS++E++   H F AGD SHP++++IY  L+ +   +K+ GY  D +
Sbjct: 656 KTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVAD-T 714

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
              + D   + K+  L  HSE+LAIA G+++   G P+RV KNLRVC DCH  TKLIS++
Sbjct: 715 GLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKV 774

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
              +I++RD +R+HHF  G+CSC DYW
Sbjct: 775 TGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            V P+ H     + AC+ L   + G++ H+ I  R    +  + N+LI  Y+ CG L  A
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 190 NKVFDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSA 244
            + FD +    +R +V+WN MI AF++ G    AL+LFR M       P+  TF S+  +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 245 C--AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF----ES 298
           C  AGL +L      H  I+      +  +  V  +L+D Y K GSLD A +VF    + 
Sbjct: 122 CVEAGLLSLEDVRAIHGRIV---GAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDE 178

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            P   L + +++I     +G  + +L+ F  + +E +  P+ +T V VL+AC+   + S 
Sbjct: 179 EPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGT-KPSGVTLVSVLNACSMLPVGSA 237

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
                +  +   + T        L+   AR+ ++  A      +   PD V W ++  A 
Sbjct: 238 TAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAI-QSPDVVSWNAMAAAY 296

Query: 419 CKKH 422
            + H
Sbjct: 297 LQHH 300


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 341/622 (54%), Gaps = 51/622 (8%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI-- 93
           LL S     S+   +++HA  + T +    +T L  + +  +AS      A +VF +I  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + ++  W TL+  C    +   +A+++F  M   G V PD+ T       CA L     
Sbjct: 79  SHKDTVDWTTLM-GCFVRHNVSDEALLIFVEMRRCG-VKPDEVTLVCLFGGCARLGDVVV 136

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF-------------------- 193
           G Q H  + K GL       N+++  YA  G +  A +VF                    
Sbjct: 137 GAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIR 196

Query: 194 -----------DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQS 240
                      D M ER+ V+W +MI  ++  G    +  L R M   +  E +  T  S
Sbjct: 197 SEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCS 256

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           I +AC+    L +G W HAY L+  +  L  +++V  +++DMY KCG + IA + F+ MP
Sbjct: 257 ILTACSQSGDLMMGRWVHAYALKTKEKEL--NIMVGTAMVDMYAKCGRIHIAFKFFKKMP 314

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +R++ SWN+++ G A+HG   AAL  F ++  E    P+ +TF  VLSAC+H G+V +G 
Sbjct: 315 QRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAK--PDDVTFTSVLSACSHSGLVDQGC 372

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            YF  + + Y ITP +EHY C+VDLL RAG ++EA  LV  MP++P+ V+  SLL +C  
Sbjct: 373 FYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSC-S 431

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H  + L E + +++++ +    +  ++LLS +YA A + N    +R+++  +G+ K PG
Sbjct: 432 IHGKLQLGEHLLQELVQLDPQN-TEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPG 490

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA--AMVDELDDG 538
            SSI + G  H+F AGD SHP+T+++Y  LD +  +L+  GY P+ +    A  D L+D 
Sbjct: 491 MSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDD 550

Query: 539 ------KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEI 592
                 K+ +L  HSE+LAI  G+++  PG+P+ +FKNLR+C+DCH   K++S+I+N EI
Sbjct: 551 LVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREI 610

Query: 593 IVRDRARFHHFKDGSCSCMDYW 614
           ++RDR RFH FK+GSCSC DYW
Sbjct: 611 VIRDRNRFHCFKEGSCSCCDYW 632



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 137/318 (43%), Gaps = 44/318 (13%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANKVFDN 195
           + F L++CA   +   G++ HA I   G+    + +++N+L+ FYASCG    A KVFD 
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 196 M--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           +    +  V W  ++  FV+    D AL +F  M+    +PD  T   +   CA L  + 
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ------------------ 294
           +G   H  +++     L       N+++DMY K G +  AR+                  
Sbjct: 136 VGAQGHGCMVK---MGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILD 192

Query: 295 -------------VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
                        VF+ MP+R+  +W  +I G+   G  + +      ++ +     N +
Sbjct: 193 GVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYV 252

Query: 342 TFVGVLSACNHRGMVSEGR--DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
           T   +L+AC+  G +  GR    + +   E  +  ++     +VD+ A+ G I  A    
Sbjct: 253 TLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGT--AMVDMYAKCGRIHIAFKFF 310

Query: 400 SNMPMKPDAVIWRSLLDA 417
             MP + + V W ++L  
Sbjct: 311 KKMPQR-NVVSWNAMLSG 327


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/599 (36%), Positives = 323/599 (53%), Gaps = 46/599 (7%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           + A+ L   +P++ + L   + I  +    DL+ A  VF  +       WN +I      
Sbjct: 209 VSARKLFDEMPKRDE-LTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH- 266

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD-- 169
                +A+ L ++M   G +  D  T+   + ACA + +F  GKQ HA+I K  L  +  
Sbjct: 267 CGCFQEALTLCRKMRFLG-IQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHS 325

Query: 170 --VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN---------------------- 205
             + ++N+LI  Y     +D A K+F  M  R++++WN                      
Sbjct: 326 FCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEM 385

Query: 206 ---------VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGM 255
                    VMI    Q G  D  LKLF++M++  FEP  + F    +AC+ L  L  G 
Sbjct: 386 PVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGR 445

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA ++ H  +   + + V N++I MY KCG ++ A  VF +MP  DL SWNS+I    
Sbjct: 446 QLHAQLV-HLGYE--SSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALG 502

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG    A++ FD+++ E  F P+ ITF+ VL+AC+H G+V +GR YF+ M+  Y ITP 
Sbjct: 503 QHGHGVKAIELFDQMLKEGVF-PDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPC 561

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            +HY  +VDL  RAG    A  ++ +MP KP A +W +LL A C+ H ++ L  E A+Q+
Sbjct: 562 EDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALL-AGCRIHGNMDLGIEAAEQL 620

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
            +       G YVLLS +YA   RWNDV  VRKLM D+ V KEP CS IE++   H F  
Sbjct: 621 FKLMPQ-NDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMV 679

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D  HP+   +Y +L+ +  ++K  GY PD ++  + D   + K+ +L  HSE+LA+  G
Sbjct: 680 DDDVHPEVLSVYRYLEQLGLEMKKLGYIPD-TKFVLHDMEYEQKEHALSTHSEKLAVGFG 738

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I+ L P   +RVFKN+R+C DCH   K +S++   EIIVRDR RFHHFK+G CSC DYW
Sbjct: 739 IMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 56/298 (18%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           D     +LI  Y + G+L+L  ++F+   +  R  V +N MI  +   G+  SAL+LFR 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGM-----WAHAYILRHCDHSLVTDVLVNNSLI 280
           M+   F PD +TF S+ SA      L +G        H  +++     + + VL  N+L+
Sbjct: 138 MRRDDFRPDDFTFTSVLSAL----VLFVGNEQQCGQMHCAVVKTGMGCVSSSVL--NALL 191

Query: 281 DMYCK--------CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            +Y K        C ++  AR++F+ MPKRD  +W ++I G+  +     A + F+ +V 
Sbjct: 192 SVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 333 EESFSPNS------------------------------ITFVGVLSACNHRGMVSEGRD- 361
               + N+                              IT+  ++SAC + G    G+  
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQM 311

Query: 362 YFDVMINEYNI--TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +  ++ NE N   +  L     L+ L  +   +DEA  +   MP++ + + W ++L  
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG 368



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 34/106 (32%)

Query: 277 NSLIDMYCKCGSLDIARQVFESMPK---------------------------------RD 303
           N L++MYCK  ++  ARQ+FE +P                                  RD
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
              +N++I G+A +G   +AL+ F R +  + F P+  TF  VLSA
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELF-RAMRRDDFRPDDFTFTSVLSA 156


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 322/584 (55%), Gaps = 22/584 (3%)

Query: 35  SLLSSLTECKSMSQ---LKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++ S +T C+ +      +QIH   LRT     P  H +L     I  ++S   ++ A  
Sbjct: 310 TMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSL-----IPMYSSVGLIEEAET 364

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF + E  +  +W  +I      +   PQ  +   +M+E   ++PD+ T    L AC+ L
Sbjct: 365 VFSRTECRDLVSWTAMISGYENCL--MPQKALETYKMMEAEGIMPDEITIAIVLSACSCL 422

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G   H    ++GLVS   + NSLI  YA C  +D A ++F + LE+++VSW  +I
Sbjct: 423 CNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSII 482

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
                      AL  FR M    +P+  T   + SACA +  L+ G   HA+ LR     
Sbjct: 483 LGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRT---G 539

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           +  D  + N+++DMY +CG ++ A + F S+   ++TSWN ++ G+A  G+   A + F 
Sbjct: 540 VSFDGFMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQ 598

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R+V E + SPN +TF+ +L AC+  GMV+EG +YF+ M  +Y+I P L+HY C+VDLL R
Sbjct: 599 RMV-ESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGR 657

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           +G ++EA   +  MPMKPD  +W +LL++ C+ H  V L E  A+ + + +     G Y+
Sbjct: 658 SGKLEEAYEFIQKMPMKPDPAVWGALLNS-CRIHHHVELGELAAENIFQDD-TTSVGYYI 715

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +YA   +W+ V  VRK+M   G+  +PGCS +E+ G  H F + D  HPQ K+I  
Sbjct: 716 LLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINA 775

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L+   +K+K  G   +  +++ +D ++  K      HSERLAI  G++N  PGMPI V 
Sbjct: 776 LLERFYKKMKEAGV--EGPESSHMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVT 833

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           KNL +C+ CH + K ISR    EI VRD  +FHHFK G CSC D
Sbjct: 834 KNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 175/344 (50%), Gaps = 17/344 (4%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           F  F +L  A+ VF ++E  N F+WN L+   A++     +A+ L+ RM+  G V PD +
Sbjct: 151 FVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKA-GLFDEALDLYHRMLWVG-VKPDVY 208

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TFP  L+ C  +    +G++ H H+ + G  SDV + N+LI  Y  CG ++ A  VFD M
Sbjct: 209 TFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
             R  +SWN MI  + + G     L+LF  M +   +PD  T  S+ +AC  L    LG 
Sbjct: 269 PNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGR 328

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H Y+LR        D  ++NSLI MY   G ++ A  VF     RDL SW ++I G+ 
Sbjct: 329 QIHGYVLR---TEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYE 385

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM----INEYN 371
                + AL+ + +++  E   P+ IT   VLSAC+    +  G +  +V     +  Y+
Sbjct: 386 NCLMPQKALETY-KMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYS 444

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           I         L+D+ A+   ID+AL +  +  ++ + V W S++
Sbjct: 445 IVA-----NSLIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSII 482


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 329/570 (57%), Gaps = 17/570 (2%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIE-N 95
           L  C SM++L++IH+  +   L   H    I++ ++ F + +    L YA  +F + + +
Sbjct: 12  LQGCNSMNKLRKIHSHVIINGL---HHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSD 68

Query: 96  PNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           P++  WN LIR    S+ + P   I+ + RM+      PD  TF FALKAC  +    + 
Sbjct: 69  PSTSAWNYLIRGF--SISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKC 126

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
            + H  + + G ++D  ++ +L+  Y++ G +++A+KVFD M  R LVSWN MI  F   
Sbjct: 127 LELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHA 186

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G    A  ++ RM       D YT  ++ S+CA ++ L++G+  H      CD    + V
Sbjct: 187 GLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIA---CDIRCESSV 243

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N+LIDMY KCGSL+ A  VF+ M KRD+ +WNS+I+G+ +HG    A+ +F R +V 
Sbjct: 244 FVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFF-RKMVA 302

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
               PN++TF+G+L  C+H+G+V EG ++F++M +++++TP ++HYGC+VDL  RAG ++
Sbjct: 303 SGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLE 362

Query: 394 EALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           +AL ++       D V+WR+LL +C K H ++ L E   K++++ E    +G YVL++ +
Sbjct: 363 KALEMIHTSSCHEDPVLWRTLLGSC-KIHRNLELGEVAMKKLVQLEA-FNAGDYVLMTSI 420

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           Y++A        +RKL+    +   PG S IEI    H+F   D  HP++  IY  L  +
Sbjct: 421 YSAANDAQGFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEV 480

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRV 573
             +    GY P+ S        D   +S+   HSE+LAIA G++    G  +R+ KNLRV
Sbjct: 481 INRAILAGYKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRV 540

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
           C+DCH  TK +S+ FN EIIVRDR RFH F
Sbjct: 541 CRDCHSFTKYVSKAFNREIIVRDRVRFHQF 570


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 317/549 (57%), Gaps = 20/549 (3%)

Query: 74  IIHFASFADLDYAFRVFYQ----IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
           I  F+    +D A RVF      ++ P S  W  +    +R+   K +A++L+  M+ Q 
Sbjct: 116 ITLFSVCRRVDEARRVFEDGGEDVDLPES-VWVAMGIGYSRNGYPK-EALLLYYEMVCQF 173

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
             L +   F  ALKAC+ L     G+  HA + K     D  +NN+L+  Y+  G  D A
Sbjct: 174 GQLGN-FAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEA 232

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITS---ACA 246
            +VFD M  R++VSWN +I   V+      A++ FR MQ   +  G+++ ++T+    CA
Sbjct: 233 LRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQ--GKGMGFSWVTLTTILPVCA 290

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            +  L  G   HA I++    +   D  V NSL+DMY KCG++D  R+VF  M  +DLTS
Sbjct: 291 RVTALGSGKEIHAVIVKS---TAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTS 347

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G+A++GR   A++ F  ++    FSP+ ITF+ +LS C+H G+  +G   F++M
Sbjct: 348 WNTLITGYAINGRMTEAMESFQEMICS-GFSPDGITFIALLSGCSHAGLADDGCRLFEMM 406

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
             +Y I+P +EHY CLVD+L RAG I EAL +V NMP KP   IW SLL++ C+ H +V 
Sbjct: 407 KMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNS-CRLHGNVP 465

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           L+E VAK++ E E    +G YV+LS +YA+A  W  V +VR+ M  +G+TKE GCS ++I
Sbjct: 466 LAEAVAKRLFELEPN-NAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQI 524

Query: 487 DGIAHEFFAGDTSHPQTKQIY-GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
               H F AG ++  +    Y      + E ++  GY PD +   + D  ++ +   +  
Sbjct: 525 KSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPD-TGVVLHDVSEEMRAMWVCG 583

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSERLA    ++N   GMPIR+ KNLRVC DCH   K +S++    I++RD  RFHHFKD
Sbjct: 584 HSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKD 643

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 644 GVCSCKDYW 652



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 137/303 (45%), Gaps = 23/303 (7%)

Query: 39  SLTECKSMSQL---KQIHAQALR-TALPQQ---HKTLLIYSRIIHFASFADLDYAFRVFY 91
           +L  C  +  L   + +HAQ L+ T  P Q   +  L +YS    F      D A RVF 
Sbjct: 184 ALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCF------DEALRVFD 237

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            + + N  +WN+LI    +  D   +AI  F+ M  +G       T    L  CA + A 
Sbjct: 238 GMPHRNVVSWNSLIAGLVKK-DGVFEAIEAFRIMQGKGMGF-SWVTLTTILPVCARVTAL 295

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GK+ HA I K     D  + NSL+  YA CG +D   +VF+ M  + L SWN +I  +
Sbjct: 296 GSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGY 355

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHS 268
              G    A++ F+ M    F PDG TF ++ S C  AGLA     +    + +   D+ 
Sbjct: 356 AINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRL----FEMMKMDYG 411

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAEAALKYF 327
           +   V     L+D+  + G +  A ++ ++MP +   S W S++    LHG    A    
Sbjct: 412 ISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVA 471

Query: 328 DRL 330
            RL
Sbjct: 472 KRL 474



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DL--TSWNSIILGFALHGRAE 321
           C+H+L+ +  +   LI ++  C  +D AR+VFE   +  DL  + W ++ +G++ +G  +
Sbjct: 101 CNHNLLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPK 160

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYG 380
            AL  +  +V +     N   F   L AC+  G +  GR  +  V+    +   V+ +  
Sbjct: 161 EALLLYYEMVCQFGQLGN-FAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNN-- 217

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            L+ L +  G  DEAL +   MP + + V W SL+    KK
Sbjct: 218 ALLRLYSEDGCFDEALRVFDGMPHR-NVVSWNSLIAGLVKK 257



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 44/274 (16%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALR-TALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           +++L       ++   K+IHA  ++ TA P      ++ S +  +A    +DY  RVF  
Sbjct: 283 TTILPVCARVTALGSGKEIHAVIVKSTAKPDAP---VLNSLVDMYAKCGAMDYCRRVFNG 339

Query: 93  IENPNSFTWNTLIRACARSVDAK-PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++  +  +WNTLI   A  ++ +  +A+  FQ MI  G   PD  TF   L  C      
Sbjct: 340 MQGKDLTSWNTLITGYA--INGRMTEAMESFQEMICSG-FSPDGITFIALLSGC------ 390

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
                +HA     GL  D             C   ++     D  +  ++  +  ++D  
Sbjct: 391 -----SHA-----GLADD------------GCRLFEMMK--MDYGISPTVEHYACLVDVL 426

Query: 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            + G    AL++ + M   F+P G  + S+ ++C     + L       +     ++   
Sbjct: 427 GRAGRIKEALEIVKNMP--FKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGN 484

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
            V+++N    +Y   G  +  + V E M KR +T
Sbjct: 485 YVMLSN----IYANAGMWESVKVVREFMEKRGMT 514


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 323/566 (57%), Gaps = 13/566 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K++H Q  R     +    +    +  +A    ++ A  VF  +++ N  +W ++I    
Sbjct: 189 KRVHGQIFRLGF--ESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYG 246

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++     +A+ +F +M  Q NV PD       L+A   +    QGK  H  + K GL  +
Sbjct: 247 QN-GLPMEALRIFGQM-RQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFE 304

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-Q 228
             +  SL   YA CG + +A   FD M   +++ WN MI  + + G  + A+ LF+ M  
Sbjct: 305 PDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMIS 364

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                D  T +S   ACA + +L L  W   YI +        DV VN +LIDM+ KCGS
Sbjct: 365 KNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKT---EYRNDVFVNTALIDMFAKCGS 421

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +D+AR+VF+    +D+  W+++I+G+ LHGR + A+  F  +  +    PN +TFVG+L+
Sbjct: 422 VDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMK-QAGVCPNDVTFVGLLT 480

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           ACNH G+V EG + F  M   Y I    +HY C+VDLL R+G+++EA   ++ MP++P  
Sbjct: 481 ACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGV 539

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
            +W +LL AC K +  V L E  A+Q+  S     +G YV LS +YAS+R W+ V  VR 
Sbjct: 540 SVWGALLGAC-KIYRHVTLGEYAAEQLF-SLDPFNTGHYVQLSNLYASSRLWDSVAKVRI 597

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           LM +KG++K+ G S IEI+G    F  GD SHP+ K+I+  L+ ++ +LK  G+ P + +
Sbjct: 598 LMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIP-HIE 656

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
           + + D   + K+ +L  HSERLAIA G+++  PG  +R+ KNLR C +CH  TKLIS++ 
Sbjct: 657 SVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLV 716

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
           N EI+VRD  RFHHFK+G CSC DYW
Sbjct: 717 NREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 198/406 (48%), Gaps = 16/406 (3%)

Query: 11  PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLI 70
           P P  HS  I  +  +  SF   SSLL      +    L QIHAQ + + L +     L+
Sbjct: 54  PLPLDHSDYIPYSGFDFDSF--FSSLLDHSVHKR---HLNQIHAQLVVSGLVES--GFLV 106

Query: 71  YSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
              +    +  ++ YA +VF +   P+ F WN +IR  + S +    AI ++ RM   G 
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYS-SHNFFGDAIEMYSRMQASG- 164

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           V PD  T P  LKAC+ +     GK+ H  IF+ G  SDV++ N L+  YA CG ++ A 
Sbjct: 165 VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQAR 224

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLA 249
            VF+ + +R++VSW  MI  + Q G    AL++F +M Q   +PD     S+  A   + 
Sbjct: 225 IVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVE 284

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G   H  +++        D+L+  SL  MY KCG + +AR  F+ M   ++  WN+
Sbjct: 285 DLEQGKSIHGCVVK-MGLEFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNA 341

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+A +G    A+  F  + + ++   +SIT    + AC   G +   + +    IN+
Sbjct: 342 MISGYAKNGYTNEAVGLFQEM-ISKNIRTDSITVRSAILACAQVGSLDLAK-WMGDYINK 399

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                 +     L+D+ A+ G++D A   V +  +  D V+W +++
Sbjct: 400 TEYRNDVFVNTALIDMFAKCGSVDLARE-VFDRTLDKDVVVWSAMI 444


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/525 (40%), Positives = 299/525 (56%), Gaps = 24/525 (4%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P++F  N+++R  + S      A+   +RM   G    +  +    LK C  L   S  +
Sbjct: 378 PSTFCCNSILRCLSES-----DALSFLRRMRTLGR-RGNAFSLAILLKPCRTL---SHAR 428

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HA++   G + D  +  SL+  YA CG  D A KVFD M+ +  V+WNV+I  + +  
Sbjct: 429 QLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNK 488

Query: 216 EFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLV 270
                L LF   RR +   +PD  T   +  AC  L  L  G  +W +A      +H   
Sbjct: 489 RTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAV-----EHGYG 543

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            ++ V NS+I MY +CG ++ A QVF   P++ + +W+++I+G A +G  E A+  F+ +
Sbjct: 544 CELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEM 603

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                  P+  TF GVLSAC+H G+V EG  +FD+M  EY + P + HYGC+VDL+ RAG
Sbjct: 604 S-RSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAG 662

Query: 391 NIDEALHLV-SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
            +DEA  LV   M + PDA IWR+LL AC + H  V L E+V   +IE +    +G YVL
Sbjct: 663 LLDEAYELVVKEMKVAPDATIWRTLLGAC-RIHGHVDLGEKVISHLIELKAQQ-AGDYVL 720

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L   YA+A  W  V  VRKLM +  +   PGC+++E++G  HEF A D SHP+  +IYG 
Sbjct: 721 LLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGK 780

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           LD I+  L+  GY P  S + + D   +GK+ +L  HSE+LAIA  +L +    PIR+ K
Sbjct: 781 LDEINRHLRIAGYVPHVS-SDLHDLDSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAK 839

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH  TK+ S ++N  +IVRDR RFHHF  G CSC DYW
Sbjct: 840 NLRVCVDCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/527 (37%), Positives = 312/527 (59%), Gaps = 10/527 (1%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F  IE  +S TW T++    ++   + +A+ +F+RM  +G V  D++TF   L AC  L
Sbjct: 233 LFEAIEERDSITWTTMVTGLTQN-GLESEALDVFRRMRAEG-VGIDQYTFGSILTACGAL 290

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            A  +GKQ HA+I +     +V++ ++L+  Y+ C  + LA  VF  M+ ++++SW  MI
Sbjct: 291 AALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMI 350

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q G  + A+++F  MQ    +PD +T  S+ S+CA LA+L  G   H   L     
Sbjct: 351 VGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLR 410

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
             VT   V+N+L+ +Y KCGS++ A ++F+ M   D  SW ++++G+A  G+A+  +  F
Sbjct: 411 PYVT---VSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLF 467

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           ++++  +   P+ +TF+GVLSAC+  G+V +GR YF  M  +++I P+ +HY C++DL +
Sbjct: 468 EKML-SKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYS 526

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R+G + +A   +  MP  PDA  W +LL AC +    + + +  A+ +++ +       Y
Sbjct: 527 RSGWLKQAEEFIKQMPRCPDAFGWATLLSAC-RLRGDMEIGKWAAENLLKLDPQ-NPASY 584

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLL  ++AS   WNDV  +R+ M D+ V KEPGCS I+     H F A D SHP ++ IY
Sbjct: 585 VLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIY 644

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L  ++ K+   GY PD S + + D  D  K   L  HSE+LAIA G++ + P MPIR+
Sbjct: 645 EKLQWLNSKMVEEGYKPDVS-SVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRI 703

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCH  TK IS+I   +I+VRD  RFH F +G CSC D+W
Sbjct: 704 VKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 197/467 (42%), Gaps = 73/467 (15%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           +HA  LRT LP    T L+ + +  +AS   L +A RVF  +   N  T N+L+ A AR+
Sbjct: 32  VHALILRT-LPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARA 90

Query: 112 ---VDAKPQAIVLFQR----------------------------MIEQGNVLPDKHTFPF 140
               D +     L QR                            + ++  V P + T   
Sbjct: 91  GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSG 150

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---- 196
            +   + L   + G+Q H  I + G  +  +  + L+  YA  G +  A +VFD M    
Sbjct: 151 VVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKN 210

Query: 197 ---------------------------LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
                                       ER  ++W  M+    Q G    AL +FRRM+ 
Sbjct: 211 VVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA 270

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                D YTF SI +AC  LA L  G   HAYI R C      +V V ++L+DMY KC S
Sbjct: 271 EGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYED---NVFVGSALVDMYSKCRS 327

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           + +A  VF  M  +++ SW ++I+G+  +G  E A++ F  +   +   P+  T   V+S
Sbjct: 328 VRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEM-QRDGIKPDDFTLGSVIS 386

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           +C +   + EG   F  +     + P +     LV L  + G+I++A  L   M    D 
Sbjct: 387 SCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQ 444

Query: 409 VIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           V W +L+       K   ++ L E++  + ++ +G    GV    SR
Sbjct: 445 VSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSR 491



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 14/326 (4%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M   + Q G    ++ +  +F   R EG   +  +  S LT C +++ L   KQIHA   
Sbjct: 248 MVTGLTQNGL---ESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 304

Query: 58  RTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ 117
           RT    +    +  + +  ++    +  A  VF ++   N  +W  +I    ++     +
Sbjct: 305 RTCY--EDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQN-GCGEE 361

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A+ +F  M   G + PD  T    + +CA L +  +G Q H      GL   V ++N+L+
Sbjct: 362 AVRVFSEMQRDG-IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALV 420

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGY 236
             Y  CG ++ A+++FD M     VSW  ++  + QFG+    + LF +M     +PDG 
Sbjct: 421 TLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGV 480

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           TF  + SAC+    +  G  ++ + ++  DH +V        +ID+Y + G L  A +  
Sbjct: 481 TFIGVLSACSRSGLVDKGR-SYFHSMQQ-DHDIVPLDDHYTCMIDLYSRSGWLKQAEEFI 538

Query: 297 ESMPK-RDLTSWNSIILGFALHGRAE 321
           + MP+  D   W +++    L G  E
Sbjct: 539 KQMPRCPDAFGWATLLSACRLRGDME 564


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 324/584 (55%), Gaps = 46/584 (7%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASF--------------ADLDYAFRVFYQIENP 96
           Q+HA  LRT L       LI+S +   ++F              A LD+     + +  P
Sbjct: 40  QLHAHLLRTGL-------LIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYL--P 90

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           ++F  N+++RA +   DA  + +   + +  +GN      T    LK    L   +  +Q
Sbjct: 91  STFQCNSILRALSDPSDAL-RFLCRVRALGRRGNAF----TLAILLKPRCSL---AHARQ 142

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HA++   G + D  +  SL+  YA+ G  D A K+FD M  R  V+WNV+I  + +   
Sbjct: 143 LHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRR 202

Query: 217 FDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVT 271
              ALKLF  M+      EPD  T   +  AC+ L  L  G  +WA+A      +H    
Sbjct: 203 TKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAE-----EHGYGG 257

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           ++ V NSLI MY +CG +D A +VF   P++ + +W ++I G A +G    A+  F+ ++
Sbjct: 258 ELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMI 317

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                +P+  TF GVLSAC+H G+V EG  +FD+M  EY + P + HYGC+VDL+ RAG 
Sbjct: 318 -RSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGL 376

Query: 392 IDEALHLVSN-MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
           +DEA   V+N M + PDA IWR+LL AC + H  V L E V   +IE +    +G YVLL
Sbjct: 377 LDEAYEFVTNEMKVAPDATIWRTLLGAC-RIHGHVDLGERVIGNLIELKAQQ-AGDYVLL 434

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
              YA+   W+ V  +RKLM ++G+   PGC+++E +G  HEF A D +HP+  +IY  L
Sbjct: 435 LNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENL 494

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             I ++L+  GY P+ S + + D   +GK+S+L  HSE+LAIA  +L      PIR+ KN
Sbjct: 495 SEIYKQLRIAGYVPNVS-SELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKN 553

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH  TK+ S I+   +IVRDR RFHHF+ G CSC DYW
Sbjct: 554 LRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 597


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/628 (34%), Positives = 340/628 (54%), Gaps = 45/628 (7%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHK----TLLIYSRII 75
           +F   R EG   +  ++++ +  C   ++L  +H   +     Q+ K     +L  + I 
Sbjct: 246 LFEKMREEGVVPDKVAMVTVVFAC---AKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 302

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    ++ A  +F ++E  N  +W+ +I A       + +A+ LF+ M+  G +LPDK
Sbjct: 303 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR-KALDLFRMMLSSG-MLPDK 360

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T    L AC      +Q +Q HA     G++ ++ + N L+HFY+    LD A  +FD 
Sbjct: 361 ITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDG 420

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---------------------QILFE-- 232
           M  R  VSW+VM+  F + G++ +    FR +                      +LF+  
Sbjct: 421 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKM 480

Query: 233 ------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                 PD     ++  ACA L  +        YI R        DV++  ++IDM+ KC
Sbjct: 481 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK---KFQLDVILGTAMIDMHAKC 537

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G ++ AR++F+ M ++++ SW+++I  +  HG+   AL  F  +++     PN IT V +
Sbjct: 538 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP-MMLRSGILPNKITLVSL 596

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           L AC+H G+V EG  +F +M  +Y++   ++HY C+VDLL RAG +DEAL L+ +M ++ 
Sbjct: 597 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 656

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           D  +W + L AC + H  VVL+E+ A  ++E +     G Y+LLS +YA+A RW DV   
Sbjct: 657 DEGLWGAFLGAC-RTHKDVVLAEKAATSLLELQPQ-NPGHYILLSNIYANAGRWEDVAKT 714

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R LM+ + + K PG + IE+D  +H+F  GDT+HP++K+IY  L  +  KL+  GY PD 
Sbjct: 715 RDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPD- 773

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           +   + D  ++ K   L  HSE+LAIA G++      PIR+ KNLRVC DCH   KL+S 
Sbjct: 774 TNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSA 833

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I    IIVRD  RFHHFK+G+CSC DYW
Sbjct: 834 ITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 173/346 (50%), Gaps = 39/346 (11%)

Query: 14  QTHSHSIFNNNRNEGSFNNH-------SSLLSSLTECKSMSQLKQIHAQALRTALPQQHK 66
           Q    S+  +NR E S   H          +S+L  C++++Q++Q+HAQA   ++    +
Sbjct: 55  QFRQTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQA---SVHGMLE 111

Query: 67  TLLIYSRIIHFAS-FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM 125
            +++ +++I+F S +  LD A+ +F  +   +S +W+ ++   A+  D        F+ +
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY-INCFGTFREL 170

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           I  G   PD +T PF ++AC                  R L +   +  +L+  Y  C  
Sbjct: 171 IRCG-ARPDNYTLPFVIRAC------------------RDLKN---LQMALVDMYVKCRE 208

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
           ++ A  +FD M ER LV+W VMI  + + G+ + +L LF +M +    PD     ++  A
Sbjct: 209 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 268

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA L  +        YI R        DV++  ++IDMY KCG ++ AR++F+ M ++++
Sbjct: 269 CAKLGAMHKARIIDDYIQR---KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 325

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            SW+++I  +  HG+   AL  F R+++     P+ IT   +L AC
Sbjct: 326 ISWSAMIAAYGYHGQGRKALDLF-RMMLSSGMLPDKITLASLLYAC 370



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 132/271 (48%), Gaps = 34/271 (12%)

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            +Q +Q HA     G++ ++ + N LI+FY+    LD A  +FD M  R  VSW+VM+  
Sbjct: 94  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 153

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           F + G++ +    FR + +    PD YT   +  AC  L  L +                
Sbjct: 154 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM---------------- 197

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
                   +L+DMY KC  ++ AR +F+ M +RDL +W  +I G+A  G+A  +L  F++
Sbjct: 198 --------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEK 249

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGR---DYFDVMINEYNITPVLEHYGCLVDLL 386
           +  EE   P+ +  V V+ AC   G + + R   DY  +   ++ +  +L     ++D+ 
Sbjct: 250 M-REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDY--IQRKKFQLDVILG--TAMIDMY 304

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           A+ G ++ A  +   M  K + + W +++ A
Sbjct: 305 AKCGCVESAREIFDRMEEK-NVISWSAMIAA 334


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 324/584 (55%), Gaps = 46/584 (7%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASF--------------ADLDYAFRVFYQIENP 96
           Q+HA  LRT L       LI+S +   ++F              A LD+     + +  P
Sbjct: 54  QLHAHLLRTGL-------LIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYL--P 104

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           ++F  N+++RA +   DA  + +   + +  +GN      T    LK    L   +  +Q
Sbjct: 105 STFQCNSILRALSDPSDAL-RFLCRVRALGRRGNAF----TLAILLKPRCSL---AHARQ 156

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HA++   G + D  +  SL+  YA+ G  D A K+FD M  R  V+WNV+I  + +   
Sbjct: 157 LHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRR 216

Query: 217 FDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVT 271
              ALKLF  M+      EPD  T   +  AC+ L  L  G  +WA+A      +H    
Sbjct: 217 TKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAE-----EHGYGG 271

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           ++ V NSLI MY +CG +D A +VF   P++ + +W ++I G A +G    A+  F+ ++
Sbjct: 272 ELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMI 331

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
                +P+  TF GVLSAC+H G+V EG  +FD+M  EY + P + HYGC+VDL+ RAG 
Sbjct: 332 -RSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGL 390

Query: 392 IDEALHLVSN-MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
           +DEA   V+N M + PDA IWR+LL AC + H  V L E V   +IE +    +G YVLL
Sbjct: 391 LDEAYEFVTNEMKVAPDATIWRTLLGAC-RIHGHVDLGERVIGNLIELKAQQ-AGDYVLL 448

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
              YA+   W+ V  +RKLM ++G+   PGC+++E +G  HEF A D +HP+  +IY  L
Sbjct: 449 LNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENL 508

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             I ++L+  GY P+ S + + D   +GK+S+L  HSE+LAIA  +L      PIR+ KN
Sbjct: 509 SEIYKQLRIAGYVPNVS-SELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKN 567

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH  TK+ S I+   +IVRDR RFHHF+ G CSC DYW
Sbjct: 568 LRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 611


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/526 (36%), Positives = 296/526 (56%), Gaps = 8/526 (1%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F QI+ P+  ++N +I     + + +  A+ LF+ ++  G  + +  T    +      
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETE-SAVTLFRELLASGQRV-NSSTLVGLIPVYLPF 328

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                 +       K G++    ++ +L   Y     +  A ++FD   E+SL SWN MI
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
             + Q G  D A+ LF+ M     P+  T  SI SACA L  LS+G W H  I       
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLI---KSER 445

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L ++V V+ +L+DMY KCGS+  ARQ+F+ M  +++ +WN++I G+ LHG  + ALK F 
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            ++ +    P  +TF+ +L AC+H G+VSEG + F  M N Y   P+ EHY C+VD+L R
Sbjct: 506 EML-QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGR 564

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG +  AL  +  MP++P   +W +LL AC   H +  ++   +K++ + +     G YV
Sbjct: 565 AGQLTNALEFIERMPLEPGPAVWGALLGACMI-HKNTEMANVASKRLFQLDPENV-GYYV 622

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +Y++ R +     VR+++  + + K PGC+ IEID   + F +GD SHPQ   I+ 
Sbjct: 623 LLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFE 682

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L+ +  K++  GY  +    A+ D  D+ K+  + +HSE+LAIA G+++ KPG  IR+ 
Sbjct: 683 MLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRII 742

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH  TK IS+I    I+VRD  RFHHFK+G CSC DYW
Sbjct: 743 KNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 211/476 (44%), Gaps = 47/476 (9%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
            L+ L    ++SQL QI AQ +   +   H  L   +++ H F     + +  ++F ++ 
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGI---HYDLSSITKLTHKFFDLGAVAHVRQLFNKVS 73

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            P+ F +N LIR  + +   K  +I L+  + +  N+ PD  T+ FA+ A + L     G
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPK-SSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVG 132

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
              HAH    G+ S++++ ++++  Y      +LA KVFD M ER  V WN MI  F + 
Sbjct: 133 VLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN 192

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
             F+ ++++F  M  +    D  T  ++ +A A L    LGM       +   HS   DV
Sbjct: 193 SYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS---DV 249

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V   LI +Y KCG     R +F+ + + DL S+N++I G+  +   E+A+  F  L+  
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 334 ESFSPNSITFVGVLSAC---NHRGM------------------VSEGRDYFDVMINE--- 369
                NS T VG++      NH  +                  VS         +NE   
Sbjct: 310 GQ-RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 370 ----YNITP--VLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKK 421
               ++ +P   L  +  ++    + G  D A+ L   M   + P+ V   S+L AC + 
Sbjct: 369 ARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQL 428

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYV--LLSRVYASARRWNDVGLVRKLMTDKGV 475
            A  +   +    +I+SE  + S VYV   L  +YA      +   +  LM DK V
Sbjct: 429 GALSI--GKWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 307/536 (57%), Gaps = 16/536 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           LD A +VF  + + +    N LI  C+       +A+ LF  + ++G +  ++ T    L
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHG-GRHDEALSLFYELRKEG-LGVNRTTLAAVL 411

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K+ A L A S  +Q HA   K G + D ++ N LI  Y  C  L  AN+VF+      ++
Sbjct: 412 KSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +   MI A  Q    + A+KLF  M +   EPD +   S+ +ACA L+    G   HA++
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++      ++D    N+L+  Y KCGS++ A   F S+P+R + SW+++I G A HG  +
Sbjct: 532 IKR---QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F R+V +E  +PN IT   VL ACNH G+V E + YF+ M   + I    EHY C
Sbjct: 589 RALELFGRMV-DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 647

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESE 439
           ++DLL RAG +D+A+ LV++MP + +A IW +LL A  + H    L +  A++  ++E E
Sbjct: 648 MIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS-RVHKDPELGKLAAEKLFILEPE 706

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG +VLL+  YASA  WN+V  VRKLM D  + KEP  S IE+    H F  GD S
Sbjct: 707 K---SGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKS 763

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILN 558
           HP TK+IY  L  + + +   G+ P+      + +LD   K+  L  HSERLA+A  +L+
Sbjct: 764 HPMTKEIYAKLVELGDLMSKAGFVPNVD--VDLHDLDRSEKELLLSHHSERLAVAFALLS 821

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG PIRV KNLR+C+DCH   K IS+I + EII+RD  RFHHF+DG+CSC DYW
Sbjct: 822 TPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 165/339 (48%), Gaps = 21/339 (6%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKA 144
           A RVF +I +P   +W++L+   A S +  P+ AI  F  M  +G V  ++   P  LK 
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVT--AYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC 112

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVS 203
                    G Q HA     G  SDV++ N+L+  Y   G +D A +VF+    ER+ VS
Sbjct: 113 VP---DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS 169

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN ++ A+V+  +   A+++F  M     +P  + F  + +AC G   +  G   HA ++
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           R        DV   N+L+DMY K G +DIA  +FE MP  D+ SWN++I G  L+G    
Sbjct: 230 R---MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 323 ALKYFDRLVVEESFS---PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           A++    L+++  +S   PN  T   +L AC+  G    GR     MI     +      
Sbjct: 287 AIE----LLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G LVD+ A+   +D+A  +   M    D ++  +L+  C
Sbjct: 343 G-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 156/331 (47%), Gaps = 10/331 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
           F+  R EG   N  +L   L          Q+HA A+ T         +  + +  +  F
Sbjct: 91  FHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSD--VFVANALVAMYGGF 148

Query: 81  ADLDYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
             +D A RVF + ++  N+ +WN L+ A  ++ D    AI +F  M+  G + P +  F 
Sbjct: 149 GFMDDARRVFNEADSERNAVSWNGLMSAYVKN-DQCGDAIQVFGEMVWSG-IQPTEFGFS 206

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
             + AC        G+Q HA + + G   DV+  N+L+  Y   G +D+A+ +F+ M + 
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAH 258
            +VSWN +I   V  G    A++L  +M+     P+ +T  SI  AC+G     LG   H
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            ++++    S   D  +   L+DMY K   LD AR+VF+ M  RDL   N++I G +  G
Sbjct: 327 GFMIKANADS---DDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           R + AL  F  L  +E    N  T   VL +
Sbjct: 384 RHDEALSLFYEL-RKEGLGVNRTTLAAVLKS 413



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 168/383 (43%), Gaps = 11/383 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S ++++ T  +++   +Q+HA  +R    +        + +  +     +D A  +F ++
Sbjct: 206 SCVVNACTGSRNIEAGRQVHAMVVRMGYDKD--VFTANALVDMYMKMGRVDIASVIFEKM 263

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  +WN LI  C  +     +AI L  +M   G ++P+  T    LKAC+   AF  
Sbjct: 264 PDSDVVSWNALISGCVLN-GHDHRAIELLLQMKYSG-LVPNVFTLSSILKACSGAGAFDL 321

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H  + K    SD YI   L+  YA    LD A KVFD M  R L+  N +I     
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSH 381

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G  D AL LF  ++      +  T  ++  + A L   S     HA  ++      + D
Sbjct: 382 GGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK---IGFIFD 438

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V N LID Y KC  L  A +VFE     D+ +  S+I   +     E A+K F  + +
Sbjct: 439 AHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM-L 497

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   P+      +L+AC       +G+     +I    ++        LV   A+ G+I
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSI 556

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
           ++A    S++P +   V W +++
Sbjct: 557 EDAELAFSSLPER-GVVSWSAMI 578



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 11/270 (4%)

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A   G   HA + K G ++     N LI FY+ C     A +VFD + +   VSW+ ++ 
Sbjct: 19  ALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A+   G   SA++ F  M+            +   C  +    LG   HA  +       
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC--VPDARLGAQVHAMAMA---TGF 131

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVF-ESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            +DV V N+L+ MY   G +D AR+VF E+  +R+  SWN ++  +  + +   A++ F 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            + V     P    F  V++AC     +  GR     M+        +     LVD+  +
Sbjct: 192 EM-VWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMK 249

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G +D A  +   MP   D V W +L+  C
Sbjct: 250 MGRVDIASVIFEKMP-DSDVVSWNALISGC 278


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/526 (36%), Positives = 296/526 (56%), Gaps = 8/526 (1%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F QI+ P+  ++N +I     + + +  A+ LF+ ++  G  + +  T    +      
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETE-SAVTLFRELLASGQRV-NSSTLVGLIPVYLPF 328

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                 +       K G++    ++ +L   Y     +  A ++FD   E+SL SWN MI
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
             + Q G  D A+ LF+ M     P+  T  SI SACA L  LS+G W H  I       
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLI---KSER 445

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L ++V V+ +L+DMY KCGS+  ARQ+F+ M  +++ +WN++I G+ LHG  + ALK F 
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            ++ +    P  +TF+ +L AC+H G+VSEG + F  M N Y   P+ EHY C+VD+L R
Sbjct: 506 EML-QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGR 564

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG +  AL  +  MP++P   +W +LL AC   H +  ++   +K++ + +     G YV
Sbjct: 565 AGQLTNALEFIERMPLEPGPAVWGALLGACMI-HKNTEMANVASKRLFQLDPENV-GYYV 622

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +Y++ R +     VR+++  + + K PGC+ IEID   + F +GD SHPQ   I+ 
Sbjct: 623 LLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFE 682

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L+ +  K++  GY  +    A+ D  D+ K+  + +HSE+LAIA G+++ KPG  IR+ 
Sbjct: 683 MLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRII 742

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH  TK IS+I    I+VRD  RFHHFK+G CSC DYW
Sbjct: 743 KNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 212/476 (44%), Gaps = 47/476 (9%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
            L+ L    ++SQL QI AQ +   +   H  L   +++ H F     + +  ++F ++ 
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGI---HYDLSSITKLTHKFFDLGAVAHVRQLFNKVS 73

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            P+ F +N LIR  + +   K  +I L+  + ++ N+ PD  T+ FA+ A + L     G
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPK-SSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVG 132

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
              HAH    G+ S++++ ++++  Y      +LA KVFD M ER  V WN MI  F + 
Sbjct: 133 VLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN 192

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
             F+ ++++F  M  +    D  T  ++ +A A L    LGM       +   HS   DV
Sbjct: 193 SYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS---DV 249

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V   LI +Y KCG     R +F+ + + DL S+N++I G+  +   E+A+  F  L+  
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 334 ESFSPNSITFVGVLSAC---NHRGM------------------VSEGRDYFDVMINE--- 369
                NS T VG++      NH  +                  VS         +NE   
Sbjct: 310 GQ-RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 370 ----YNITP--VLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKK 421
               ++ +P   L  +  ++    + G  D A+ L   M   + P+ V   S+L AC + 
Sbjct: 369 ARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQL 428

Query: 422 HASVVLSEEVAKQVIESEGGICSGVYV--LLSRVYASARRWNDVGLVRKLMTDKGV 475
            A  +   +    +I+SE  + S VYV   L  +YA      +   +  LM DK V
Sbjct: 429 GALSI--GKWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/651 (34%), Positives = 344/651 (52%), Gaps = 89/651 (13%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFAD-LDYAFRVFYQIE 94
           LS L  CK++  L QIH   ++  +     +      I+H A S +D L YA R+     
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTD--SYFTGKLILHCAISISDALPYARRLLLCFP 58

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            P++F +NTL+R  + S D    ++ +F  M+ +G V PD  +F F +KA     +   G
Sbjct: 59  EPDAFMFNTLVRGYSES-DEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 117

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV------------ 202
            Q H    K GL S +++  +LI  Y  CG ++ A KVFD M + +LV            
Sbjct: 118 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 177

Query: 203 -------------------SWNVMIDAFVQFGEFDSALKLFRRM---------------- 227
                              SWNVM+  +++ GE +SA ++F  M                
Sbjct: 178 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 237

Query: 228 ----------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
                           +    P+  +   + SAC+   +   G   H ++ +   +S + 
Sbjct: 238 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEK-AGYSWI- 295

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            V VNN+LIDMY +CG++ +AR VFE M  KR + SW S+I G A+HG+ E A++ F+ +
Sbjct: 296 -VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 354

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                 +P+ I+F+ +L AC+H G++ EG DYF  M   Y+I P +EHYGC+VDL  R+G
Sbjct: 355 TAY-GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSG 413

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            + +A   +  MP+ P A++WR+LL AC   H ++ L+E+V +++ E +    SG  VLL
Sbjct: 414 KLQKAYDFICQMPIPPTAIVWRTLLGAC-SSHGNIELAEQVKQRLNELDPN-NSGDLVLL 471

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-------SHPQT 503
           S  YA+A +W DV  +RK M  + + K    S +E+    ++F AG+        +H + 
Sbjct: 472 SNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKL 531

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           K+I   L L DE     GYTP+ + +A+ D  ++ K+  +  HSE+LA+A  +  L  G 
Sbjct: 532 KEI--ILRLKDEA----GYTPEVA-SALYDVEEEEKEDQVSKHSEKLALAFALARLSKGA 584

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLR+C+DCH V KL S+++ VEI+VRDR RFH FKDGSCSC DYW
Sbjct: 585 NIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 307/536 (57%), Gaps = 16/536 (2%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           LD A +VF  + + +    N LI  C+       +A+ LF  + ++G +  ++ T    L
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHG-GRHDEALSLFYELRKEG-LGVNRTTLAAVL 411

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           K+ A L A S  +Q HA   K G + D ++ N LI  Y  C  L  AN+VF+      ++
Sbjct: 412 KSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           +   MI A  Q    + A+KLF  M +   EPD +   S+ +ACA L+    G   HA++
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++      ++D    N+L+  Y KCGS++ A   F S+P+R + SW+++I G A HG  +
Sbjct: 532 IKR---QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL+ F R+V +E  +PN IT   VL ACNH G+V E + YF+ M   + I    EHY C
Sbjct: 589 RALELFGRMV-DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 647

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESE 439
           ++DLL RAG +D+A+ LV++MP + +A IW +LL A  + H    L +  A++  ++E E
Sbjct: 648 MIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS-RVHKDPELGKLAAEKLFILEPE 706

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG +VLL+  YASA  WN+V  VRKLM D  + KEP  S IE+    H F  GD S
Sbjct: 707 K---SGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKS 763

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILN 558
           HP TK+IY  L  + + +   G+ P+      + +LD   K+  L  HSERLA+A  +L+
Sbjct: 764 HPMTKEIYAKLVELGDLMSKAGFVPNVD--VDLHDLDRSEKELLLSHHSERLAVAFALLS 821

Query: 559 LKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             PG PIRV KNLR+C+DCH   K IS+I + EII+RD  RFHHF+DG+CSC DYW
Sbjct: 822 TPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 156/331 (47%), Gaps = 10/331 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
           F+  R EG   N  +L   L          Q+HA A+ T         +  + +  +  F
Sbjct: 91  FHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSD--VFVANALVAMYGGF 148

Query: 81  ADLDYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
             +D A RVF + ++  N+ +WN L+ A  ++ D    AI +F  M+  G + P +  F 
Sbjct: 149 GFMDDARRVFNEADSERNAVSWNGLMSAYVKN-DQCGDAIQVFGEMVWSG-IQPTEFGFS 206

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
             + AC        G+Q HA + + G   DV+  N+L+  Y   G +D+A+ +F+ M + 
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAH 258
            +VSWN +I   V  G    A++L  +M+     P+ +T  SI  AC+G     LG   H
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            ++++    S   D  +   L+DMY K   LD AR+VF+ M  RDL   N++I G +  G
Sbjct: 327 GFMIKANADS---DDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           R + AL  F  L  +E    N  T   VL +
Sbjct: 384 RHDEALSLFYEL-RKEGLGVNRTTLAAVLKS 413



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 168/383 (43%), Gaps = 11/383 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           S ++++ T  +++   +Q+HA  +R    +        + +  +     +D A  +F ++
Sbjct: 206 SCVVNACTGSRNIEAGRQVHAMVVRMGYDKD--VFTANALVDMYMKMGRVDIASVIFEKM 263

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
            + +  +WN LI  C  +     +AI L  +M   G ++P+  T    LKAC+   AF  
Sbjct: 264 PDSDVVSWNALISGCVLN-GHDHRAIELLLQMKYSG-LVPNVFTLSSILKACSGAGAFDL 321

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+Q H  + K    SD YI   L+  YA    LD A KVFD M  R L+  N +I     
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSH 381

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G  D AL LF  ++      +  T  ++  + A L   S     HA  ++      + D
Sbjct: 382 GGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK---IGFIFD 438

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V N LID Y KC  L  A +VFE     D+ +  S+I   +     E A+K F  + +
Sbjct: 439 AHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM-L 497

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   P+      +L+AC       +G+     +I    ++        LV   A+ G+I
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSI 556

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
           ++A    S++P +   V W +++
Sbjct: 557 EDAELAFSSLPER-GVVSWSAMI 578



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 115/270 (42%), Gaps = 11/270 (4%)

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A   G   HA + K G ++     N LI FY+ C     A + FD + +   VSW+ ++ 
Sbjct: 19  ALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVT 76

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A+   G   SA++ F  M+            +   C  +    LG   HA  +       
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC--VPDARLGAQVHAMAMA---TGF 131

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVF-ESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            +DV V N+L+ MY   G +D AR+VF E+  +R+  SWN ++  +  + +   A++ F 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +V      P    F  V++AC     +  GR     M+        +     LVD+  +
Sbjct: 192 EMVW-SGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMK 249

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            G +D A  +   MP   D V W +L+  C
Sbjct: 250 MGRVDIASVIFEKMP-DSDVVSWNALISGC 278


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 298/524 (56%), Gaps = 11/524 (2%)

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           + +P++ +W  LI A   +  A  +AI + +R    G + PD  T    L ACA +    
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHAL-EAIGVARRAFASG-MRPDSFTAVRVLTACARVADLE 58

Query: 153 QGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            G+   A   +  G+   V++  + +  Y  CG ++ A  VFD M  R  V+W  M+  +
Sbjct: 59  TGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGY 118

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G    AL LF  MQ+   +PD YT     SAC  L  L LG  A   +  H D  L 
Sbjct: 119 ASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMV--HWDEVLG 176

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             VL   +LIDMY KCGS   A  VF+ M +RD+  WN++ILG  + G  + A     ++
Sbjct: 177 NPVL-GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQM 235

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +     N  TF+G+L +C H G+V++GR YF  M + Y I+P +EHYGC+VDL +RAG
Sbjct: 236 K-KSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAG 294

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            ++EA  L+ +MPM  +AV+W +LL  C K H +  L+E   KQ+I  E    SG YV+L
Sbjct: 295 LLEEAHQLIGDMPMLANAVVWGALLGGC-KIHRNADLAEHALKQLIRLEP-WNSGNYVML 352

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +Y+++ RW D   +R  M  KG+ K P  S +E+DG  H+F+ GD SHP + +IY  L
Sbjct: 353 SNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKL 412

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           D +  ++K+ GY P  ++  M D  ++ K+++L  HSE++AIA  ++  +PG  IRV KN
Sbjct: 413 DELGMEMKAMGYEPT-TEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKN 471

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   KLISRI   EI+VRD  RFH F+DG CSC DYW
Sbjct: 472 LRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/651 (34%), Positives = 344/651 (52%), Gaps = 89/651 (13%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFAD-LDYAFRVFYQIE 94
           LS L  CK++  L QIH   ++  +     +      I+H A S +D L YA R+     
Sbjct: 9   LSLLNSCKNLRALTQIHGLFIKYGVDTD--SYFTGKLILHCAISISDALPYARRLLLCFP 66

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            P++F +NTL+R  + S D    ++ +F  M+ +G V PD  +F F +KA     +   G
Sbjct: 67  EPDAFMFNTLVRGYSES-DEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV------------ 202
            Q H    K GL S +++  +LI  Y  CG ++ A KVFD M + +LV            
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185

Query: 203 -------------------SWNVMIDAFVQFGEFDSALKLFRRM---------------- 227
                              SWNVM+  +++ GE +SA ++F  M                
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245

Query: 228 ----------------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
                           +    P+  +   + SAC+   +   G   H ++ +   +S + 
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEK-AGYSWI- 303

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            V VNN+LIDMY +CG++ +AR VFE M  KR + SW S+I G A+HG+ E A++ F+ +
Sbjct: 304 -VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                 +P+ I+F+ +L AC+H G++ EG DYF  M   Y+I P +EHYGC+VDL  R+G
Sbjct: 363 TAY-GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSG 421

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            + +A   +  MP+ P A++WR+LL AC   H ++ L+E+V +++ E +    SG  VLL
Sbjct: 422 KLQKAYDFICQMPIPPTAIVWRTLLGAC-SSHGNIELAEQVKQRLNELDPN-NSGDLVLL 479

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-------SHPQT 503
           S  YA+A +W DV  +RK M  + + K    S +E+    ++F AG+        +H + 
Sbjct: 480 SNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKL 539

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           K+I   L L DE     GYTP+ + +A+ D  ++ K+  +  HSE+LA+A  +  L  G 
Sbjct: 540 KEI--ILRLKDEA----GYTPEVA-SALYDVEEEEKEDQVSKHSEKLALAFALARLSKGA 592

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLR+C+DCH V KL S+++ VEI+VRDR RFH FKDGSCSC DYW
Sbjct: 593 NIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 341/595 (57%), Gaps = 25/595 (4%)

Query: 32  NHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  +  +SL  C ++  ++   QIH   +++    +  +++  + I  ++    +  A +
Sbjct: 104 NEFTFSTSLKACGALGVVENGMQIHGMCVKSGF--EWVSVVGNATIDMYSKCGRIGMAEQ 161

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF ++   N  +WN +I       + + +++VLFQRM  QG V PD+ TF   LKAC  L
Sbjct: 162 VFNKMPFRNLVSWNAMIAGHTHEGNGR-KSLVLFQRMQGQGEV-PDEFTFTSTLKACGAL 219

Query: 149 FAFSQGKQAHAHIFKRGLVSDV--YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
            A   G Q HA +  RG    +   I ++++  YA CG+L  A KVFD + +++L+SW+ 
Sbjct: 220 GAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSA 279

Query: 207 MIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           +I  F Q G    A+ LFR++ + +   DG+    +    A LA +  G   H YIL+  
Sbjct: 280 LIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVP 339

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 D+ V NS+IDMY KCG  + A ++F  M  R++ SW  +I G+  HG  E A+ 
Sbjct: 340 SG---LDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIH 396

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+R+ ++     + + ++ +LSAC+H G++ E ++YF  + N + + P +EHY C+VD+
Sbjct: 397 LFNRMQLD-GIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDI 455

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGIC 443
           L RAG + EA +L+ NM +KP+  IW++LL A C+ H ++ +  EV + +  ++++  + 
Sbjct: 456 LGRAGQLKEAKNLIENMKLKPNEGIWQTLLSA-CRVHGNLEIGREVGEILFRMDTDNPV- 513

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
              YV++S +YA A  W +   VRKL+  KG+ KE G S +EI+   H F+ GD +HP T
Sbjct: 514 --NYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLT 571

Query: 504 KQIYGFLDLIDEKLKSR-GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL---NL 559
           ++I+  L  ++ ++K   GY     + A+ D  ++ K+ +LR+HSE+LAI L ++     
Sbjct: 572 EKIHEMLKEMERRVKEEVGYAYGL-RFALHDVEEESKEENLRVHSEKLAIGLALVCDGME 630

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K G  IRVFKNLRVC DCHE  K +S+I     +VRD  RFH F+DG CSC DYW
Sbjct: 631 KKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 182/387 (47%), Gaps = 17/387 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           + LL + ++     Q  Q+HA A+          ++    I  +   + +D A  VF ++
Sbjct: 8   AKLLRNCSKNGLFDQGLQVHAAAVNMGFG--FDLIMNNDLIDMYGKCSRVDLACSVFDRM 65

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N  +W  L+    +  +AK  ++ L   M   G V P++ TF  +LKAC  L     
Sbjct: 66  LERNVVSWTALMCGYLQEGNAKG-SLALLCEMGYSG-VKPNEFTFSTSLKACGALGVVEN 123

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G Q H    K G      + N+ I  Y+ CG + +A +VF+ M  R+LVSWN MI     
Sbjct: 124 GMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTH 183

Query: 214 FGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    +L LF+RMQ   E PD +TF S   AC  L  +  G   HA ++      +   
Sbjct: 184 EGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITR-GFPISIR 242

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            ++ ++++D+Y KCG L  A++VF+ + +++L SW+++I GFA  G    A+  F +L  
Sbjct: 243 NIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL-- 300

Query: 333 EESFSP-NSITFVGVLSACNHRGMVSEGRD---YFDVMINEYNITPVLEHYGCLVDLLAR 388
            ES S  +      ++       +V +G+    Y   + +  +I+        ++D+  +
Sbjct: 301 RESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVA----NSIIDMYLK 356

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G  +EA  L S M ++ + V W  ++
Sbjct: 357 CGLTEEAERLFSEMQVR-NVVSWTVMI 382


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 313/548 (57%), Gaps = 28/548 (5%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------- 129
           ++   D++ A  +F +I  P+   +N +I     +      ++ LF+ ++  G       
Sbjct: 254 YSKCGDVNTARLLFRRINRPDLIAYNAMISGFTAN-GGTECSVKLFRELLFSGERVSSST 312

Query: 130 --NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
              ++P    F     AC+           H    K G++ +  ++ +    Y     +D
Sbjct: 313 IVGLIPLHSPFGHLHLACSI----------HGFCVKSGIILNPTVSTAFTAIYNKLNEID 362

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
           LA  +FD   E+++V+WN MI  + Q G  ++A+ LF+ M +  F P+  T  +I SACA
Sbjct: 363 LARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACA 422

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L +LS G W H  I      +L  ++ V+ +L+DMY KCG++  A Q+F+SM +++  +
Sbjct: 423 QLGSLSFGKWVHHLIK---SENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVT 479

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G+ LHG    ALK ++ ++    ++P+++TF+ VL AC+H G+V EG + F  M
Sbjct: 480 WNTMIFGYGLHGYGHEALKLYNEML-HLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNM 538

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
           +N+Y I P++EHY C+VD+L R+G +++AL  +  MP++P   +W +LL AC   H    
Sbjct: 539 VNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGAC-MIHKDTD 597

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
           ++   ++++ E + G   G YVLLS +Y+  R +     +R+++  + + K PGC+ IE+
Sbjct: 598 IARLASERLFELDPG-SVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEV 656

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
           +G  H F +GD SH     IY  L+ +  K++  GY  + +  A+ D  ++ K+ ++ +H
Sbjct: 657 NGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAE-TVPALHDVEEEEKELAVNVH 715

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LAIA G++  +PG  IR+ KNLRVC DCH  TK IS+I    I+VRD  RFHHFKDG
Sbjct: 716 SEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDG 775

Query: 607 SCSCMDYW 614
            CSC DYW
Sbjct: 776 ICSCGDYW 783



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 188/428 (43%), Gaps = 58/428 (13%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           ++L S + +  +   L Q HAQ +         TL   ++ +    F+   +A  +F+ +
Sbjct: 13  NTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLF--DFSATRHARALFFSV 70

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
             P+ F +N L+R  + + D+   +I L+  +    N+ PD  T+ FA+ AC      S 
Sbjct: 71  PKPDIFLFNVLVRGFSLN-DSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC------SN 123

Query: 154 GKQA---HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
            K     HAH    G  S+V++ ++L+  Y     +  A KVFD M ER  V WN MI+ 
Sbjct: 124 DKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMING 183

Query: 211 FVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILR----HC 265
            V+   FD +++LFR M       D  T  ++  A A L  L +GM      L+     C
Sbjct: 184 LVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFC 243

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           D+ L         LI +Y KCG ++ AR +F  + + DL ++N++I GF  +G  E ++K
Sbjct: 244 DYVLT-------GLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVK 296

Query: 326 YFDRLVVEESFSPNSITFVGVLS----------ACNHRGM-VSEG-------RDYFDVMI 367
            F  L+       +S T VG++           AC+  G  V  G          F  + 
Sbjct: 297 LFRELLFSGERVSSS-TIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIY 355

Query: 368 NEYNITPVLEH------------YGCLVDLLARAGNIDEALHLVSNM---PMKPDAVIWR 412
           N+ N   +  H            +  ++    + G+ + A+ L   M      P+AV   
Sbjct: 356 NKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTIT 415

Query: 413 SLLDACCK 420
           ++L AC +
Sbjct: 416 TILSACAQ 423


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 328/605 (54%), Gaps = 44/605 (7%)

Query: 32  NHSSLLSSLTEC-----KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           N  +L S+L  C      S+   K +H  A++  L      ++  + +  +A   DL+ A
Sbjct: 141 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD--VVVGTALLDTYAKIGDLEDA 198

Query: 87  FRVFYQIENPNSFTWNTLIRACAR----SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
            ++F  + +PN   +N +I    +    + +   +A+ LF  M  +G + P + TF   L
Sbjct: 199 TKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRG-MKPSEFTFSSIL 257

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           KAC+ + AF  GKQ HA IFK  L SD +I N+L+  Y+  G ++   K F +  +  +V
Sbjct: 258 KACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVV 317

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQILF---EPDGYTFQSITSACAGLATLSLGMWAHA 259
           SW  +I   VQ G+F+  L LF   ++LF   +PD +T   + SACA LA +  G   HA
Sbjct: 318 SWTSLIVGHVQNGQFEGGLTLFH--ELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHA 375

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           Y ++     +    ++ NS I MY KCG +D A   F+     D+ SW+ +I   A HG 
Sbjct: 376 YAIKT---GIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 432

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           A+ A+  F+ L+     +PN ITF+GVL AC+H G+V EG  YF++M  ++ ITP ++H 
Sbjct: 433 AKEAVDLFE-LMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHS 491

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL RAG + EA   + +   + D V+WRSLL AC + H +    + VA++VIE E
Sbjct: 492 ACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSAC-RVHKATDTGKRVAERVIELE 550

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               +  YVLL  +Y  A        +R LM D+GV KEPG S IE+  + H F AGD S
Sbjct: 551 PE-AAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRS 609

Query: 500 HPQTKQIY----------GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
           HP ++ IY            LD IDEKL S    P +   +MV             HSE+
Sbjct: 610 HPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVS-----------YHSEK 658

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+  GI++L    P+RV KNLR C  CHE  KL SR+ N EII+RD  RFH F+DGSCS
Sbjct: 659 LAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCS 718

Query: 610 CMDYW 614
           C DYW
Sbjct: 719 CGDYW 723



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 182/389 (46%), Gaps = 36/389 (9%)

Query: 55  QALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
            AL T        LL  S I  +     +D+A  VF   +  +S +WN+LI    R + +
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR-IGS 122

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ--GKQAHAHIFKRGLVSDVYI 172
             + + L  +M+  G  L + +    ALKAC   F+ S   GK  H    K GL  DV +
Sbjct: 123 NDEMLRLLVKMLRHGLNL-NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVV 181

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF----GEF-DSALKLFRRM 227
             +L+  YA  G L+ A K+F  M + ++V +N MI  F+Q      EF + A+ LF  M
Sbjct: 182 GTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEM 241

Query: 228 QIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
           Q    +P  +TF SI  AC+ +     G   HA I +   ++L +D  + N+L+++Y   
Sbjct: 242 QSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK---YNLQSDEFIGNALVELYSLS 298

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           GS++   + F S PK D+ SW S+I+G   +G+ E  L  F  L+      P+  T   +
Sbjct: 299 GSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLF-SGRKPDEFTISIM 357

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD----LLARAGNIDEALHLVSNM 402
           LSAC +   V  G       I+ Y I   + ++  + +    + A+ G+ID A     NM
Sbjct: 358 LSACANLAAVKSGEQ-----IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSA-----NM 407

Query: 403 PMK----PDAVIWRSLLDA----CCKKHA 423
             K    PD V W  ++ +     C K A
Sbjct: 408 TFKETKNPDIVSWSVMISSNAQHGCAKEA 436



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 18/328 (5%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           N  +WN+LI    + +    + + LF+      ++  DK TF  AL  C        G+ 
Sbjct: 5   NVVSWNSLISGYTQ-MGFYHEVMNLFKEA-RMSDLRLDKFTFSNALSVCGRTLDLRLGRL 62

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            HA I   GL   V + NSLI  Y  CG +D A  VF++  E   VSWN +I  +V+ G 
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 122

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAG--LATLSLGMWAHAYILRHCDHSLVTDV 273
            D  L+L  +M +     + Y   S   AC     +++  G   H   ++     L  DV
Sbjct: 123 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK---LGLDLDV 179

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF------ALHGRAEAALKYF 327
           +V  +L+D Y K G L+ A ++F+ MP  ++  +N++I GF      A     EA   +F
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           +  +      P+  TF  +L AC+       G+      I +YN+         LV+L +
Sbjct: 240 E--MQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVELYS 296

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +G+I++ L    + P K D V W SL+
Sbjct: 297 LSGSIEDGLKCFHSTP-KLDVVSWTSLI 323



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 31/234 (13%)

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           M +R++VSWN +I  + Q G +   + LF+  ++     D +TF +  S C     L LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              HA I       L   VL+ NSLIDMYCKCG +D AR VFES  + D  SWNS+I G+
Sbjct: 61  RLIHALITV---SGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGY 117

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN-------------HRGMVSEGRD 361
              G  +  L+   ++ +    + NS      L AC              H   V  G D
Sbjct: 118 VRIGSNDEMLRLLVKM-LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 176

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             DV++              L+D  A+ G++++A  +   MP  P+ V++ +++
Sbjct: 177 -LDVVVGT-----------ALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMI 217



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H +  + R    F   S +LS+     ++   +QIHA A++T +   + T++  S+I  +
Sbjct: 340 HELLFSGRKPDEFT-ISIMLSACANLAAVKSGEQIHAYAIKTGI--GNFTIIQNSQICMY 396

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A   D+D A   F + +NP+  +W+ +I + A+   AK +A+ LF+ M   G + P+  T
Sbjct: 397 AKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAK-EAVDLFELMKGSG-IAPNHIT 454

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKR--GLVSDVYINNSLIHFYASCGHLDLANK-VFD 194
           F   L AC++     +G + +  I K+  G+  +V  +  ++      G L  A   + D
Sbjct: 455 FLGVLVACSHGGLVEEGLR-YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMD 513

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
           +  E   V W  ++ A       D+  ++  R+ I  EP+
Sbjct: 514 SGFEGDPVMWRSLLSACRVHKATDTGKRVAERV-IELEPE 552


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/647 (34%), Positives = 343/647 (53%), Gaps = 87/647 (13%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L +   +  LK +H++    +  +     +   R   +A+  +   A  VF  I   N  
Sbjct: 42  LDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRA--YAARGEPGLARNVFDVIPERNVI 99

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +N +IR+   +      A+++F+ M+  G   PD +T+P  LKAC+       G Q H 
Sbjct: 100 FYNVMIRSYMNN-HLYDDALLVFRDMV-SGGFSPDHYTYPCVLKACSCSDNLRIGLQLHG 157

Query: 160 HIFK----------RGLVS---------------------DVYINNSLIHFYAS------ 182
            +FK           GL++                     DV   NS++  YA       
Sbjct: 158 AVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDD 217

Query: 183 ----CGHLD---------------------------LANKVFDNMLERSLVSWNVMIDAF 211
               C  +D                              ++F N+ ++SLVSWNVMI  +
Sbjct: 218 ALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVY 277

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           ++      ++ L+ +M +   EPD  T  S+  AC  L+ L LG   H Y+ R     L 
Sbjct: 278 MKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERK---KLC 334

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            ++L+ NSLIDMY +CG L+ A++VF+ M  RD+ SW S+I  + + G+   A+  F  +
Sbjct: 335 PNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEM 394

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                 SP+SI FV +LSAC+H G+++EG+ YF  M ++Y ITP++EH+ CLVDLL R+G
Sbjct: 395 Q-NSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSG 453

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV---VLSEEVAKQVIESEGGICSGVY 447
            +DEA +++  MPMKP+  +W +LL + C+ ++++   +L+ +   Q+   E    SG Y
Sbjct: 454 RVDEAYNIIKQMPMKPNERVWGALLSS-CRVYSNMDIGILAADKLLQLAPEE----SGYY 508

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA A RW +V  +R LM  + + K PG S++E++   H F AGDT HPQ+K+IY
Sbjct: 509 VLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIY 568

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             L ++  K+K  GY P  + +A+ D  ++ K+  L +HSE+LAI   ILN +   PIR+
Sbjct: 569 EELSVLVGKMKELGYVPK-TDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQES-PIRI 626

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCH   KLIS+I   EI++RD  RFHHFKDG CSC DYW
Sbjct: 627 TKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 331/576 (57%), Gaps = 29/576 (5%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENP-NSFTWNT 103
           M ++ ++HA  ++T   Q   +L  +   +  +++ A   YA  V  ++  P + F++NT
Sbjct: 1   MIRVYKLHATLIKTGQHQNPHSLRPF--FLTCSNYPAAARYAATVLLRLPTPPDPFSYNT 58

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +I+  + +      AI LF  M  + +V  D  TFP  LK              H+ IFK
Sbjct: 59  IIKHVSPT-----GAISLFSHM-HRNSVPFDHFTFPLILKH-------HHHHLLHSLIFK 105

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
            G  +++++ N+LI+ Y S G LD+A K+FD M  R +VSW+ +I   V+      AL +
Sbjct: 106 LGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSV 165

Query: 224 FRRMQILFEP-----DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
           F++MQ+         D     S+ SA + L  + LG+W H++I+R     +V  V +  +
Sbjct: 166 FQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRM---GIVMTVPLGTA 222

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           LI+MY +CG +D + +VF+ MP+R++ +W ++I G A+HGR+  ALK F  +  E    P
Sbjct: 223 LINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMK-ESGLKP 281

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           +   F+GVL AC+H G+V +G   F+ M +E+ I P+LEHYGC+VDLL RAG I EA   
Sbjct: 282 DGALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDF 341

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           V  MP+KP++VIWR+LL AC   H  + L+E+  +++IE +     G YVLLS  Y    
Sbjct: 342 VEEMPLKPNSVIWRTLLGACV-NHNHLGLAEKARERIIELD-PYHDGDYVLLSNAYGRVG 399

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
            W     +R  M    + KEPG S + ID + HEF +GD  HPQ ++I  FL  I + +K
Sbjct: 400 NWGGKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVK 459

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             GYTP+ S + + D  D+ K+  L  HSE+LA+A  +L  +    IRV KNLR+C DCH
Sbjct: 460 LGGYTPNTS-SVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCH 518

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +  K  S IF+ +II+RDR RFHHF  G CSC D+W
Sbjct: 519 DFMKHASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 328/604 (54%), Gaps = 24/604 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTAL---PQQHKTLL-IYS 72
           +F     EG   +  +L+ ++  C  +S     K  H+ A++  L   P     L+ +Y+
Sbjct: 100 LFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYT 159

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            +        L+ A +VF ++   NS  W  +I+    +   +     LF RM   G  L
Sbjct: 160 EL------GSLEEAHKVFEEVPLKNSVIWGVMIKG-HLNFSEEFGVFELFSRMRRSGFEL 212

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV-SDVYINNSLIHFYASCGHLDLANK 191
            D       ++AC  ++A  +GK  H    K+  + S+ ++  SL+  Y  CG LD A K
Sbjct: 213 -DPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALK 271

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           +F+ +  R +V W+ +I  F + G    ++ +FR+M      P+  TF SI  AC+ L +
Sbjct: 272 LFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGS 331

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   H Y++R+    +  DV    S IDMY KCG +  A +VF  +P++++ SW+++
Sbjct: 332 LKQGRSVHGYMIRN---GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTM 388

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I GF +HG    AL  F  +       PNS+TFV VLSAC+H G + EG  +F  M  +Y
Sbjct: 389 INGFGMHGLCAEALNLFYEMRSVNQL-PNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDY 447

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            ITPV EHY C+VDLL RAG IDEAL  ++NMP +P A  W +LL A C+ H    L+EE
Sbjct: 448 GITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGA-CRIHRRAELAEE 506

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
           VAK+++  E    SGVYV+LS +YA    W  V   R  M +KG+ K  G +SIEI+   
Sbjct: 507 VAKKLLPLESDQ-SGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKL 565

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           + F + D    +  QI    + + E+++  GY PD  +  + D  D+ KQ  L  HSE+L
Sbjct: 566 YLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDL-RFVLHDVDDEVKQEVLCGHSEKL 624

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AI  G+LN   GMPIR+ KN+RVC DCH  +K IS I   +II+RD  RFHH +DG CSC
Sbjct: 625 AIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSC 684

Query: 611 MDYW 614
            DYW
Sbjct: 685 GDYW 688



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 200/391 (51%), Gaps = 12/391 (3%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           S N   +LLS     K+++   Q++AQ L  AL   H++LL    I   +     L  A 
Sbjct: 11  SRNPTKTLLSLFRFTKTLASNHQLNAQILVNAL---HRSLLFGPMIFGAYIQLGSLHVAS 67

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           + F  I   N  +WNT++ + +++       + LF+RM+++G  L D     FA+KAC  
Sbjct: 68  KAFNHITFENLHSWNTILASHSKN-KCFYDVLQLFKRMLKEGK-LVDSFNLVFAVKACFG 125

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L  F   K  H+   K  L  D Y+  +L++ Y   G L+ A+KVF+ +  ++ V W VM
Sbjct: 126 LSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVM 185

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I   + F E     +LF RM+   FE D +  + +  AC  +     G   H   ++   
Sbjct: 186 IKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIK--K 243

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           + + ++  +  SL+DMY KCG LD A ++FE +  RD+  W++II GFA +GRA  ++  
Sbjct: 244 NFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISM 303

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F R ++ +S +PNS+TF  ++ AC+  G + +GR     MI    +   +++Y   +D+ 
Sbjct: 304 F-RQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMY 361

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           A+ G I  A  +   +P K +   W ++++ 
Sbjct: 362 AKCGCIVTAYRVFCQIPEK-NVFSWSTMING 391


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/573 (38%), Positives = 330/573 (57%), Gaps = 20/573 (3%)

Query: 50  KQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           +Q+H  ALR+ L P           + H   F  LD A R F +I  PN      +   C
Sbjct: 108 RQLHLLALRSGLFPSDAYCASALLHMYHHC-FRPLD-ARRAFDEIPTPNPVIVTAMASGC 165

Query: 109 ARSVDAKPQAIVLFQRMIEQGNV-LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
            R+ +     + +F+ M+  G+  + D+     AL A A +         HA + K GL 
Sbjct: 166 MRN-NLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLD 224

Query: 168 SDVYINNSLIHFYASCGHLDL--ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
               + N++I  YA  G  DL  A K+FD M++R +VSWN MI  + Q G    AL L+ 
Sbjct: 225 GQTGVANTIIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYS 283

Query: 226 RMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           +M I+      +  T  ++  ACA    +  G   H  ++R     L  +V V  S++DM
Sbjct: 284 KMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRM---GLEDNVYVGTSVVDM 340

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y KCG +++A + F+ +  +++ SW+++I G+ +HG  + AL  F  +  +    PN IT
Sbjct: 341 YSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMR-KSGLKPNYIT 399

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           F+ VL+AC+H G++SEGR +++ M  E+ I P +EHYGC+VDLL RAG +DEA  L+  M
Sbjct: 400 FITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM 459

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
            +KPDA +W +LL A C+ + +V L++  A+++ E +    SG YVLLS +YA A  W +
Sbjct: 460 KVKPDAALWGALLSA-CRIYKNVELAKICAERLFELD-ATNSGYYVLLSNIYAEAGMWKE 517

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           V  +R L+  +G+ K PG SS+E+ G  H F+ GD SHPQ K+IY +L+ + E++   GY
Sbjct: 518 VERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGY 577

Query: 523 TPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
            P+    +++ +LD + ++S LR+HSE+LA+A  ++N   G  I V KNLRVC DCH   
Sbjct: 578 VPN--TGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAI 635

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K+I+++   EII+RD  RFHHFKDG CSC DYW
Sbjct: 636 KIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/669 (34%), Positives = 347/669 (51%), Gaps = 78/669 (11%)

Query: 15  THSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQ---------- 64
           +HS+S+++  R+     +   L S+L  C +    + +HA A+ + L +           
Sbjct: 2   SHSNSLYHFLRHVSFPPDPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHS 61

Query: 65  ------------------HKTLLIYSRII-HFASFADLDYAFRVFYQIEN----PNSFTW 101
                              K ++ +S +I  +++  D + A+ +  Q+ +    PN  TW
Sbjct: 62  YIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITW 121

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N L+    RS  A   A+    RM  +G   PD      AL A   +   S GKQ H ++
Sbjct: 122 NGLVSGLNRSGRAL-DAVTALVRMHSEG-FFPDATGVSCALSAVGDVKEVSVGKQVHGYV 179

Query: 162 FKRGLVSDVYINNSLIHFYASCG-------------HLDLAN------------KVFDNM 196
            K G   D  +  +LI  Y  CG             H+D+A+            +V + +
Sbjct: 180 VKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEAL 239

Query: 197 L----------ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSAC 245
           L          E ++VSW  ++   VQ G    A+ LFR MQ I  EP+  T   +  A 
Sbjct: 240 LLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAF 299

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A +A L  G  AH + LR      + DV V ++L+DMY KCG    AR +F++MP R++ 
Sbjct: 300 ANVAALMHGRSAHCFSLRK---GFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVV 356

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN++I G+A+HG A  A++ F  +   +   P+ +TF  VL AC+  G+  EGR YF+ 
Sbjct: 357 SWNAMIGGYAMHGDAANAVQLFCSMQKCKQ-KPDLVTFTCVLGACSQAGLTEEGRRYFNE 415

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M   + I+P +EHY C+V LL R+G +DEA  L++ MP +PD+ IW SLL +C + + +V
Sbjct: 416 MQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSC-RVYGNV 474

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
           +L+E  A+++ + E G  +G YVLLS +YAS + W+ V  VR  M + G+ KE GCS IE
Sbjct: 475 LLAEVAAEKLFQLEPGN-AGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIE 533

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           I    H   AGD SHP    I   L+ +  ++   G+ P      + D  +  K + L +
Sbjct: 534 IKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPS-RDFVLHDVEEQEKDNILAV 592

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LA+ALG+++ +PG P+RV KNLR+C DCHE  K IS     EI VRD  RFHHFKD
Sbjct: 593 HSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKD 652

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 653 GKCSCGDYW 661


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/582 (36%), Positives = 329/582 (56%), Gaps = 22/582 (3%)

Query: 43  CKSMSQLKQIHAQALRTALPQQ---HKTLLIYSRIIHFASFADLDYAFRVFYQI--ENPN 97
           C  +  ++Q+H+ A  +          +LL Y     ++    L+ A  VF  +  E  +
Sbjct: 151 CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTY-----YSKNGILEEAEMVFNGMGEEVRD 205

Query: 98  SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
             +WN++I A  +      +A+ L++ M+ +G  + D  T    L   + +   S G Q 
Sbjct: 206 EVSWNSMIVAYGQHKRG-LKALALYRDMVHRGFEI-DMFTLASVLTTFSCVEDLSGGLQF 263

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGH-LDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
           HA   K G   + ++ + LI  YA CG  +  + KVF+ +    LV WN MI  + Q  E
Sbjct: 264 HAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKE 323

Query: 217 FD-SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
               AL+ FR+MQ   + PD  +F    SAC+ L++ S G   HA  ++    S    + 
Sbjct: 324 LSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPS--NQIS 381

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           VNN+L+ MY KCG+L  AR++F+ MP+ +  + NSII G+A HG    +L  F++++   
Sbjct: 382 VNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAA- 440

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
           S +P SIT V +LSAC H G V EG+ YF++M + + I P  EHY C++DLL RAG + E
Sbjct: 441 SIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSE 500

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A  L+  MP  P +  W +LL A C+K+ ++ L+E+ A Q ++ E    +  Y++L+ +Y
Sbjct: 501 AERLIDTMPFSPGSAAWAALLGA-CRKYGNMELAEKAANQFLQLE-PTNAVPYIMLASMY 558

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           ++AR+W +   +RKLM D+G+ K+PGCS IE++   H F A D SHP+ K+I+ +LD + 
Sbjct: 559 SAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMF 618

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRL--HSERLAIALGILNLKPGMPIRVFKNLR 572
            K+K  GY PD   A + D+    ++  + L  HSE+LA+A G+L  K G P+ V KNLR
Sbjct: 619 VKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLR 678

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +C DCH   K +S I   +I VRD  RFH F+DG CSC DYW
Sbjct: 679 ICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 130/287 (45%), Gaps = 26/287 (9%)

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
           H F +    +V+  N+LI  YA    + +A+ +FD + +  LVS+N +I+A+   G+  S
Sbjct: 64  HAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLS 123

Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV------TD 272
           AL LF  M+ +    DG+TF  + +AC            H  ++R   HSL       + 
Sbjct: 124 ALSLFGEMREMGLVMDGFTFSGVITACCN----------HVGLIRQL-HSLAFSSGFDSY 172

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALKYFDRL 330
           V V NSL+  Y K G L+ A  VF  M +  RD  SWNS+I+ +  H R   AL  + R 
Sbjct: 173 VSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALY-RD 231

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGC-LVDLLAR 388
           +V   F  +  T   VL+  +    +S G  +    I   +N      H G  L+D+ A+
Sbjct: 232 MVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKN---RHVGSGLIDMYAK 288

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            G        V       D V+W +++    +     V + E  +Q+
Sbjct: 289 CGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQM 335


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 328/605 (54%), Gaps = 44/605 (7%)

Query: 32  NHSSLLSSLTEC-----KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           N  +L S+L  C      S+   K +H  A++  L      ++  + +  +A   DL+ A
Sbjct: 220 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD--VVVGTALLDTYAKIGDLEDA 277

Query: 87  FRVFYQIENPNSFTWNTLIRACAR----SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
            ++F  + +PN   +N +I    +    + +   +A+ LF  M  +G + P + TF   L
Sbjct: 278 TKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRG-MKPSEFTFSSIL 336

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
           KAC+ + AF  GKQ HA IFK  L SD +I N+L+  Y+  G ++   K F +  +  +V
Sbjct: 337 KACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVV 396

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQILF---EPDGYTFQSITSACAGLATLSLGMWAHA 259
           SW  +I   VQ G+F+  L LF   ++LF   +PD +T   + SACA LA +  G   HA
Sbjct: 397 SWTSLIVGHVQNGQFEGGLTLFH--ELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHA 454

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           Y ++     +    ++ NS I MY KCG +D A   F+     D+ SW+ +I   A HG 
Sbjct: 455 YAIKT---GIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 511

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
           A+ A+  F+ L+     +PN ITF+GVL AC+H G+V EG  YF++M  ++ ITP ++H 
Sbjct: 512 AKEAVDLFE-LMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHS 570

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL RAG + EA   + +   + D V+WRSLL AC + H +    + VA++VIE E
Sbjct: 571 ACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSAC-RVHKATDTGKRVAERVIELE 629

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               +  YVLL  +Y  A        +R LM D+GV KEPG S IE+  + H F AGD S
Sbjct: 630 PE-AAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRS 688

Query: 500 HPQTKQIY----------GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
           HP ++ IY            LD IDEKL S    P +   +MV             HSE+
Sbjct: 689 HPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVS-----------YHSEK 737

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+  GI++L    P+RV KNLR C  CHE  KL SR+ N EII+RD  RFH F+DGSCS
Sbjct: 738 LAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCS 797

Query: 610 CMDYW 614
           C DYW
Sbjct: 798 CGDYW 802



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 176/393 (44%), Gaps = 20/393 (5%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            ++ L+   T   S+   K  H   ++T    +    L+ + +  +    + D A ++F 
Sbjct: 21  TYTKLVQCSTRTGSLIHGKLAHMHMIKTCF--KPCLFLLNNLLYMYCKCGETDVAKKLFD 78

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           ++   N  +WN+LI    + +    + + LF+      ++  DK TF  AL  C      
Sbjct: 79  RMPKRNVVSWNSLISGYTQ-MGFYHEVMNLFKEA-RMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G+  HA I   GL   V + NSLI  Y  CG +D A  VF++  E   VSWN +I  +
Sbjct: 137 RLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGY 196

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAG--LATLSLGMWAHAYILRHCDHS 268
           V+ G  D  L+L  +M +     + Y   S   AC     +++  G   H   ++     
Sbjct: 197 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK---LG 253

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF------ALHGRAEA 322
           L  DV+V  +L+D Y K G L+ A ++F+ MP  ++  +N++I GF      A     EA
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 313

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
              +F+  +      P+  TF  +L AC+       G+      I +YN+         L
Sbjct: 314 MYLFFE--MQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNAL 370

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V+L + +G+I++ L    + P K D V W SL+
Sbjct: 371 VELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLI 402



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H +  + R    F   S +LS+     ++   +QIHA A++T +   + T++  S+I  +
Sbjct: 419 HELLFSGRKPDEFTI-SIMLSACANLAAVKSGEQIHAYAIKTGI--GNFTIIQNSQICMY 475

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A   D+D A   F + +NP+  +W+ +I + A+   AK +A+ LF+ M   G + P+  T
Sbjct: 476 AKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAK-EAVDLFELMKGSG-IAPNHIT 533

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKR--GLVSDVYINNSLIHFYASCGHLDLANK-VFD 194
           F   L AC++     +G + +  I K+  G+  +V  +  ++      G L  A   + D
Sbjct: 534 FLGVLVACSHGGLVEEGLR-YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMD 592

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
           +  E   V W  ++ A       D+  ++  R+ I  EP+
Sbjct: 593 SGFEGDPVMWRSLLSACRVHKATDTGKRVAERV-IELEPE 631


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 318/586 (54%), Gaps = 17/586 (2%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           N ++   +LT C  +  L    +  +R         + + S ++H ++    ++ A RVF
Sbjct: 106 NSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVF 165

Query: 91  YQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
             +   +   W+T++     +   +P +A+ ++ RM E G V  D+      ++AC    
Sbjct: 166 DGMPRKDRVAWSTMVAGFVTA--GRPVEALAMYSRMREHG-VSDDEVVMVGVIQACMSTG 222

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G   H  + +  +  DV    SL+  YA  GHLD+A +VF  M  R+ V+W+ +I 
Sbjct: 223 NARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALIS 282

Query: 210 AFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            F Q G    AL LFR +Q    +P  +   S   ACA +  L LG   H +ILR     
Sbjct: 283 GFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR---- 338

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L    ++  +++DMY KCGSL+ AR++F  +  RDL  WN+II     HG    AL  F 
Sbjct: 339 LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQ 398

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            L  E    P+  TF  +LSA +H G+V EG+ +FD MI E+ I P  +HY C+VDLLAR
Sbjct: 399 ELN-ETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLAR 457

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           +G ++EA  ++++M  +P   IW  LL  C   +  + L E +AK+++E       GV  
Sbjct: 458 SGLVEEANDMLASMQTEPTIAIWVILLSGCLN-NKKLELGETIAKKILELRPEDI-GVLA 515

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           L+S +YA+A++W+ V  +RKLM D G  K PG S IE+ G  H F   D SHPQ ++I  
Sbjct: 516 LVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILK 575

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            +  ++ +++  GY P      +  +LD+ +   L  HSERLAIA G+LN  PG  + + 
Sbjct: 576 MVAKLNSEMRKLGYVP--RTEFVYHDLDEDQL--LSYHSERLAIAFGLLNTSPGTRLVII 631

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH+  K IS+I + EI+VRD  RFHHFKDG+CSC DYW
Sbjct: 632 KNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 158/324 (48%), Gaps = 12/324 (3%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           WN L+ A +R+  A   A+ +F+ +       P+  TF   L ACA L      +     
Sbjct: 76  WNGLLSAHSRA-GAPGAALRVFRALPSSAR--PNSTTFTLTLTACARLGDLDAAESVRVR 132

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
            F  G   DV++ ++L+H Y+ CG ++ A +VFD M  +  V+W+ M+  FV  G    A
Sbjct: 133 AFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEA 192

Query: 221 LKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           L ++ RM +     D      +  AC       +G   H  +LRHC   +  DV+   SL
Sbjct: 193 LAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHC---MRMDVVTTTSL 249

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           + MY K G LD+A QVF  MP R+  +W+++I GFA +GRA  AL  F R +  +   P 
Sbjct: 250 VSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLF-RELQADGLQPC 308

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
           S   V  L AC   G +  G+     ++       +L     ++D+ ++ G+++ A  L 
Sbjct: 309 SWALVSALLACASVGFLKLGKSIHGFILRRLEWQCILG--TAVLDMYSKCGSLESARKLF 366

Query: 400 SNMPMKPDAVIWRSLLDACCKKHA 423
           + +  + D V+W +++ ACC  H 
Sbjct: 367 NKLSSR-DLVLWNAII-ACCGTHG 388


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/530 (38%), Positives = 312/530 (58%), Gaps = 21/530 (3%)

Query: 94  ENP--NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           E+P  ++ +WNT+I    RS  A   A+   +RM + G V  + +T+  A      L   
Sbjct: 203 ESPLRDTTSWNTIISGLMRSGHA-ADALSHLRRMAQAGVVF-NHYTYSTAFVLAGMLLLP 260

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSL-VSWNVMI 208
             G+Q H  +    L  D ++ +SL+  Y  CG L+ A  VFD+   L R +  +W+ M+
Sbjct: 261 DLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMV 320

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             +VQ G  + AL LFRRM +     D +T  S+ +ACA +  +  G   H      C  
Sbjct: 321 AGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHG-----CVE 375

Query: 268 SL--VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
            L    D  + ++++DMY KCG+L+ AR +F+    +++  W S++  +A HG+   A++
Sbjct: 376 KLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIE 435

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F+R+  E+  +PN IT VGVLSAC+H G+VSEG  YF  M  EY I P +EHY C+VDL
Sbjct: 436 LFERMTAEK-MTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDL 494

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-S 444
             R+G +D+A + +    +  +A++W++LL AC + H     ++  ++++++ E   C +
Sbjct: 495 YGRSGLLDKAKNFIEENNINHEAIVWKTLLSAC-RLHQHNEYAKLASEKLVQLEQ--CDA 551

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G YV+LS +YA+  +W+D   +R  M ++ V K+PG S I +    H F AGD SHPQ+ 
Sbjct: 552 GSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSA 611

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +IY +L+ + E+LK  GYT   +   + D  D+ ++++L+ HSE+LAIA GI++   G P
Sbjct: 612 EIYAYLEKLVERLKEIGYT-SRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTP 670

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+FKNLRVC+DCHE  K IS     EI+VRD  RFHHFKD SCSC D+W
Sbjct: 671 LRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 164/365 (44%), Gaps = 48/365 (13%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF +     +  W   I  CAR        +  F  M+ +G   P+       ++ CA +
Sbjct: 67  VFDERPTRTAPVWTLTISGCARR-GRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGM 125

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GK+ H  + + G+  DV + N+++  YA CG  + A +VF  M ER  VSWN+ I
Sbjct: 126 GDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAI 185

Query: 209 DAFVQFGEFDSALKLF-------------------------------RRMQ---ILFEPD 234
            A +Q G+   +++LF                               RRM    ++F  +
Sbjct: 186 GACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVF--N 243

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            YT+ +       L    LG   H  +L     +L  D  V +SL+DMYCKCG L+ A  
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVL---IAALEGDAFVRSSLMDMYCKCGLLEAAAS 300

Query: 295 VFE--SMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           VF+  S   RD+  +W++++ G+  +GR E AL  F R+ + E  + +  T   V +AC 
Sbjct: 301 VFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRM-LREGVAADRFTLTSVAAACA 359

Query: 352 HRGMVSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           + GMV +GR     +    Y +   L     +VD+ A+ GN+++A  +      K  AV 
Sbjct: 360 NVGMVEQGRQVHGCVEKLWYKLDAPLA--SAIVDMYAKCGNLEDARSIFDRACTKNIAV- 416

Query: 411 WRSLL 415
           W S+L
Sbjct: 417 WTSML 421



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 18/292 (6%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P   T PF+    A L    +G+ A     +  L +  +   S++ F+        A  V
Sbjct: 14  PRASTHPFS---AALLL---RGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGV 67

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLAT 250
           FD    R+   W + I    + G +   ++ F  M    E  P+ +   ++   CAG+  
Sbjct: 68  FDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGD 127

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           +  G   H ++LR+  H    DV++ N+++DMY KCG  + AR+VF +M +RD  SWN  
Sbjct: 128 VESGKRVHGWMLRNGVH---LDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIA 184

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD--VMIN 368
           I      G    +++ FD   + ++ S N+I   G++ + +    +S  R      V+ N
Sbjct: 185 IGACIQSGDILGSMQLFDESPLRDTTSWNTI-ISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            Y  +      G L  LL   G       L++   ++ DA +  SL+D  CK
Sbjct: 244 HYTYSTAFVLAGML--LLPDLGRQLHGRVLIA--ALEGDAFVRSSLMDMYCK 291


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/499 (41%), Positives = 294/499 (58%), Gaps = 48/499 (9%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD----LDYAFRVFY 91
           +LS      S+S+L Q HA  L++ L   H T    SR+I   S       + YA  +F 
Sbjct: 10  ILSFAEMATSISELHQAHAHILKSGLI--HSTFAA-SRLIASVSTNSHAQAIPYAHSIFS 66

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I NPNS+ WNT+IRA A S   +  A+ +F +M+   +VLPDK+TF FALK+C      
Sbjct: 67  RIPNPNSYMWNTIIRAYANSPTPEA-ALTIFHQML-HASVLPDKYTFTFALKSCGSFSGV 124

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            +G+Q H H+ K GL  D++I N+LIH YASCG ++ A  + D MLER +VSWN ++ A+
Sbjct: 125 EEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAY 184

Query: 212 VQ-----------FGE---------------------FDSALKLFRRMQ-ILFEPDGYTF 238
            +           FGE                     F   L LF  MQ    +PD  T 
Sbjct: 185 AERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTL 244

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+ SACA +  LS G W HAYI ++    +  D  V  +L+DMY KCGS++ A +VF S
Sbjct: 245 VSVLSACAHVGALSQGEWVHAYIDKN---GISIDGFVATALVDMYSKCGSIEKALEVFNS 301

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
             ++D+++WNSII G + HG  + AL+ F  ++VE  F PN +TFV VLSAC+  G++ E
Sbjct: 302 CLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVE-GFKPNEVTFVCVLSACSRAGLLDE 360

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           GR+ F++M++ + I P +EHYGC+VDLL R G ++EA  LV  MP K  +V+W SLL A 
Sbjct: 361 GREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGA- 419

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
           C+ H +V L+E VA++++E      S  +V LS +YAS  RW DV  VR+ M  +GV K+
Sbjct: 420 CRNHGNVELAERVAQKLLELSPQESSS-FVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD 478

Query: 479 PGCSSIEIDGIAHEFFAGD 497
           PGCS IE+DG  +EF AG+
Sbjct: 479 PGCSMIEVDGTVYEFLAGE 497


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/644 (35%), Positives = 344/644 (53%), Gaps = 80/644 (12%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L +   ++ LK++H + L     + + ++ I    + +A+  +   A  +F +I + N  
Sbjct: 28  LDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRV-YAACGEPGLARHIFDEITDKNVV 86

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
            +N +IR+   +   K  A+++++ M  QG V PD +T+P  LKA +   +   G Q H 
Sbjct: 87  FFNVMIRSYVNNHLYK-DALLVYKTMYTQGFV-PDMYTYPCVLKASSRSDSLWVGLQIHG 144

Query: 160 HIFKRGLVSDVYINN-------------------------------SLIHFYASCGHLD- 187
            + K GL  ++Y+ N                               S++  YA  G  + 
Sbjct: 145 AVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFND 204

Query: 188 --------------------------LANKVFDNML----------ERSLVSWNVMIDAF 211
                                     + N   DN+L          ++S++SWNVMI  +
Sbjct: 205 ALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMY 264

Query: 212 VQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           V       A+ L+ +M+    EPD  +  S+  A   L+ LSLG   H +  R     L+
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERK---KLL 321

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            ++L+ N+LIDMY KCG L  AR VF  M  RD+ SW SII  +   G+   A+  F  +
Sbjct: 322 PNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEM 381

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
                 +P+SI FV VL+AC+H G++ +GR YF++M  E  ITP LEH+ C+VDLL RAG
Sbjct: 382 R-NSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAG 439

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            IDEA   +  MP++PD  +W  LL AC + ++++ +    A +++       SG YVLL
Sbjct: 440 KIDEAYGFIRQMPLEPDERVWGPLLSAC-RVYSNMNIGILAADKLLMLNPE-HSGYYVLL 497

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YA A RW DV  +R +M  KG+ K PG S++E++   H F AGD SHPQ+K+IY  L
Sbjct: 498 SNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEEL 557

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           D++  K+K  GY P+ + +A+ D  ++ K+  L +HSE+LA+A  I+N KPG PIRV KN
Sbjct: 558 DVLVGKMKELGYMPE-TDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKN 616

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   KLIS+I   EII+RD  RFHHF++G CSC DYW
Sbjct: 617 LRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/580 (34%), Positives = 323/580 (55%), Gaps = 15/580 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +L ++ E + +    QIH+ A +T        L  +  I  ++    +  A  +F +   
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF--ISLYSKCGKIKMASTLFREFRR 284

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+   +N +I     + + +  ++ LF+ ++  G  L           +   +  ++   
Sbjct: 285 PDIVAYNAMIHGYTSNGETE-LSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYA--- 340

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H +  K   +S   ++ +L   Y+    ++ A K+FD   E+SL SWN MI  + Q G
Sbjct: 341 -IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 216 EFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + A+ LFR MQ   F P+  T   I SACA L  LSLG W H  ++R  D    + + 
Sbjct: 400 LTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFE--SSIY 456

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V+ +LI MY KCGS+  AR++F+ MPK++  +WN++I G+ LHG  + AL  F  ++   
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEML-NS 515

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             +P  +TF+ VL AC+H G+V EG + F+ MI+ Y   P ++HY C+VD+L RAG++  
Sbjct: 516 GIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQR 575

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           AL  +  MP++P   +W +LL AC + H    L+  V++++ E +     G +VLLS ++
Sbjct: 576 ALQFIEAMPIQPGPSVWETLLGAC-RIHKDTNLARTVSEKLFELDPDNV-GYHVLLSNIH 633

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           ++ R +     VR+    + + K PG + IEI    H F +GD SHPQ K I+  L+ ++
Sbjct: 634 SADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLE 693

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            K++  GY P+ ++ A+ D  ++ ++  +++HSERLAIA G++  +PG  IR+ KNLRVC
Sbjct: 694 GKMREAGYQPE-TELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVC 752

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH  TKLIS+I    I+VRD  RFHHFKDG CSC DYW
Sbjct: 753 LDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 174/369 (47%), Gaps = 17/369 (4%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           IH QA+      +   LL+ S I+  +  F  ++ A +VF ++   ++  WNT+I    R
Sbjct: 141 IHGQAIVDGCDSE---LLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISG-YR 196

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
             +   ++I +F+ +I +     D  T    L A A L     G Q H+   K G  S  
Sbjct: 197 KNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD 256

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230
           Y+    I  Y+ CG + +A+ +F       +V++N MI  +   GE + +L LF+ + + 
Sbjct: 257 YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELML- 315

Query: 231 FEPDGYTFQSIT--SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               G   +S T  S       L L    H Y L+    + ++   V+ +L  +Y K   
Sbjct: 316 ---SGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLK---SNFLSHTSVSTALTTVYSKLNE 369

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           ++ AR++F+  P++ L SWN++I G+  +G  E A+  F R +    FSPN +T   +LS
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLF-REMQNSEFSPNPVTITCILS 428

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC   G +S G+   D ++   +    +     L+ + A+ G+I EA  L   MP K + 
Sbjct: 429 ACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNE 486

Query: 409 VIWRSLLDA 417
           V W +++  
Sbjct: 487 VTWNTMISG 495



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 11/311 (3%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S+S L Q HAQ +      ++   L+       +    + YA  +F  ++ P+ F +N L
Sbjct: 32  SISHLAQTHAQIVLHGF--RNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVL 89

Query: 105 IRACARSVDAKPQA-IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +R    SV+  P + + +F  + +  ++ P+  T+ FA+ A +       G   H     
Sbjct: 90  MRGF--SVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIV 147

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
            G  S++ + ++++  Y     ++ A KVFD M E+  + WN MI  + +   +  ++++
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 224 FRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           FR +  +     D  T   I  A A L  L LGM  H+   +   +S      V    I 
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS---HDYVLTGFIS 264

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           +Y KCG + +A  +F    + D+ ++N++I G+  +G  E +L  F  L++  +    S 
Sbjct: 265 LYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA-KLKSS 323

Query: 342 TFVGVLSACNH 352
           T V ++    H
Sbjct: 324 TLVSLVPVSGH 334


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 328/561 (58%), Gaps = 11/561 (1%)

Query: 56  ALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
           A R     + KT+++Y+ +I        ++ A  +F  + + +S TW T++    ++   
Sbjct: 200 ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN-GL 258

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
           + +A+ +F+RM  +G V  D++TF   L AC  L A  +GKQ HA+I +     +V++ +
Sbjct: 259 QLEALDVFRRMRAEG-VGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGS 317

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEP 233
           +L+  Y+ C  + LA  VF  M  R+++SW  MI  + Q    + A++ F  MQ+   +P
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP 377

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D +T  S+ S+CA LA+L  G   H   L      L+  + V+N+L+ +Y KCGS++ A 
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQFHCLALVS---GLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F+ M   D  SW +++ G+A  G+A+  +  F++++V     P+ +TF+GVLSAC+  
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVN-GLKPDGVTFIGVLSACSRA 493

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V +G DYFD M  +++I P+ +HY C++DL +R+G   EA   +  MP  PDA  W +
Sbjct: 494 GLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL +C +   ++ + +  A+ ++E++       YVLL  ++A+  +W +V  +R+ M D+
Sbjct: 554 LLSSC-RLRGNMEIGKWAAENLLETDPQ-NPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
            V KEPGCS I+     H F A D SHP + +IY  L+ ++ K+   GY PD S + + D
Sbjct: 612 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVS-SVLHD 670

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             D  K   +  HSE+LAIA G++ +   MPIR+ KNLRVC DCH  TK IS+I   +I+
Sbjct: 671 VADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDIL 730

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           VRD  RFH F DG+CSC D+W
Sbjct: 731 VRDAVRFHKFSDGTCSCGDFW 751



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 205/490 (41%), Gaps = 75/490 (15%)

Query: 31  NNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF 87
           N ++++LSS       + ++    +H   L+T L Q   T L+   +  +A    L  A 
Sbjct: 10  NRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFL-QAPPTFLLNHLLTAYAKSGRLARAR 68

Query: 88  RVFYQIENPNSFTWNTLIRACARS------------------------------VDAKPQ 117
           RVF ++ +PN FT N L+ A A S                                +  +
Sbjct: 69  RVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           ++ L++ ++ + +V P + T    +   + L   + G   H  + + G  +  ++ + L+
Sbjct: 129 SVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLV 188

Query: 178 HFYASCGHLDLANKVFDN-------------------------------MLERSLVSWNV 206
             YA  G +  A +VF                                 M++R  ++W  
Sbjct: 189 DMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTT 248

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           M+    Q G    AL +FRRM+      D YTF SI +AC  LA    G   HAYI R  
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTW 308

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 +V V ++L+DMY KC S+ +A  VF  M  R++ SW ++I+G+  +  +E A++
Sbjct: 309 YED---NVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  + + +   P+  T   V+S+C +   + EG   F  +     +   +     LV L
Sbjct: 366 AFSEMQM-DGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTL 423

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGI 442
             + G+I++A  L   M    D V W +L+       K   ++ L E++    ++ +G  
Sbjct: 424 YGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVT 482

Query: 443 CSGVYVLLSR 452
             GV    SR
Sbjct: 483 FIGVLSACSR 492


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/613 (35%), Positives = 336/613 (54%), Gaps = 40/613 (6%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G + +H +L   L+ C +  ++   +Q+H  +++        T +  S    +    DL+
Sbjct: 172 GRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYG--ADTITSMGNSLCRLYCKSGDLE 229

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
              R F    + N  TW T+I +CA   +     + LF  M+E G V+P++ T    +  
Sbjct: 230 SGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLE-GGVMPNEFTLTSVMSL 288

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           C      S GKQ  A  +K G  +++ + NS ++ Y   G  D A ++F+ M   S+++W
Sbjct: 289 CGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITW 348

Query: 205 NVMIDAFVQFGEFDSA-------------LKLFRRM-QILFEPDGYTFQSITSACAGLAT 250
           N MI  + Q    DSA             LKLFR + +   +PD +TF SI S C+ +  
Sbjct: 349 NAMISGYAQI--MDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMA 406

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   HA  ++      ++DV+VN++L++MY KCGS++ A + F  MP R   +W S+
Sbjct: 407 LEQGEQIHANTIKT---GCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSM 463

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G++ HGR++ A++ F+ +V+  +  PN ITFV +LSAC++ G+V E   YFD+M NEY
Sbjct: 464 ISGYSQHGRSQDAIQLFEDMVLSGA-RPNEITFVSLLSACSYAGLVEEAERYFDMMRNEY 522

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
           +I P+++HYGC+VD+  R G +D+A   +     +P+  IW SL+ A C+ H ++ L+  
Sbjct: 523 HIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLV-AGCRSHGNMELAFY 581

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT--DKGVTKEPGCSSIEIDG 488
            A +++E +  +    YVLL  +Y S  RW DV  VRKL    D GV ++   S I I  
Sbjct: 582 AADRLLELKPKVIE-TYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDR--SWIAIRD 638

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMV---DELDDGKQSS--- 542
             + F A D +HPQ  ++Y  L+ + EK K+ GY P  +   ++    E DD K ++   
Sbjct: 639 KVYFFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAG 698

Query: 543 --LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
             ++ HSERLA+ALG+L   PG  +RV KN+ +C+DCH   K  S + N EI+VRD  R 
Sbjct: 699 SLIKHHSERLAVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRL 758

Query: 601 HHFKDGSCSCMDY 613
           H FKDG CSC D+
Sbjct: 759 HKFKDGRCSCGDF 771



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M+  G  +      P  L  C         +  H H+ K G  +D+++  SL++ Y  C 
Sbjct: 67  MLRDGQTVQSAMYVPL-LHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCA 125

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITS 243
               A ++FD M ++++V+W  +I       E   AL++F  M  L   P  YT   + S
Sbjct: 126 SSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLS 185

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           AC+    + LG   H Y +++   ++ +   + NSL  +YCK G L+   + F+  P ++
Sbjct: 186 ACSAARRIDLGQQVHGYSIKYGADTITS---MGNSLCRLYCKSGDLESGLRAFKGTPDKN 242

Query: 304 LTSWNSIILGFAL-HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           + +W ++I   A      +  L  F  + +E    PN  T   V+S C  R  +S G+  
Sbjct: 243 VITWTTMISSCAEDENYLDLGLSLFLDM-LEGGVMPNEFTLTSVMSLCGARLDMSLGKQ- 300

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                 +      L      + L  R G  DEA+ L   M      + W +++
Sbjct: 301 VQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMD-SSSIITWNAMI 352


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/539 (39%), Positives = 308/539 (57%), Gaps = 10/539 (1%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A   D+  A   F  I   +    + +I   A+S +   QA  LF R++ + +VLP+++
Sbjct: 289 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQS-NQNEQAFELFLRLM-RSSVLPNEY 346

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +    L+AC  +     GKQ H H  K G  SD+++ N+L+ FYA C  +D + K+F ++
Sbjct: 347 SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 406

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGM 255
            + + VSWN ++  F Q G  + AL +F  MQ    P    T+ S+  ACA  A++    
Sbjct: 407 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 466

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H  I +    +   D ++ NSLID Y KCG +  A +VF+ + +RD+ SWN+II G+A
Sbjct: 467 QIHCSIEKS---TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 523

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           LHG+A  AL+ FDR+  + +   N ITFV +LS C   G+V+ G   FD M  ++ I P 
Sbjct: 524 LHGQAADALELFDRMN-KSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPS 582

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHY C+V LL RAG +++AL  + ++P  P A++WR+LL +C   H +V L    A+++
Sbjct: 583 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII-HKNVALGRFSAEKI 641

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           +E E       YVLLS +YA+A   + V L+RK M + GV K PG S +EI G  H F  
Sbjct: 642 LEIEPQD-ETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 700

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           G   HP  + I   L+ ++ K    GY PD +   + D   + K   L +HSERLA+A G
Sbjct: 701 GSVDHPDMRVINAMLEWLNLKTSREGYIPDIN-VVLHDVDKEQKTRMLWVHSERLALAYG 759

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++   PG PIR+ KNLR C DCH    +IS+I   EIIVRD  RFHHF+DG CSC DYW
Sbjct: 760 LVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 12/201 (5%)

Query: 132 LPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLD 187
           +P   +F  A  L+ C        G+  H H+ +RG V   D++  N L++ Y   G L 
Sbjct: 54  VPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLA 113

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
            A ++FD M ER++VS+  ++ A  Q G+F++A  LFRR++    E + +   ++     
Sbjct: 114 SARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAI 173

Query: 247 GL--ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
            +  A L+ G+ + A+ L H DH    +  V + LID Y  C  +  A  VF  + ++D 
Sbjct: 174 AMDAAGLAGGVHSCAWKLGH-DH----NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 305 TSWNSIILGFALHGRAEAALK 325
             W +++  ++ +   E A +
Sbjct: 229 VVWTAMVSCYSENDCPENAFR 249



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 148/339 (43%), Gaps = 26/339 (7%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     L  A R+F ++   N  ++ TL++A A+  D +  A  LF+R+  +G+ + ++ 
Sbjct: 106 YGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAA-ALFRRLRWEGHEV-NQF 163

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                LK    + A       H+  +K G   + ++ + LI  Y+ C  +  A  VF+ +
Sbjct: 164 VLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI 223

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMW 256
           + +  V W  M+  +    E D     FR  Q               +C+ LA       
Sbjct: 224 VRKDAVVWTAMVSCY---SENDCPENAFRCAQ---------------SCSLLAISCARQG 265

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H   ++  +    T+  V  +L+DMY KCG +  AR  FE +P  D+   + +I  +A 
Sbjct: 266 IHGCAIKTLND---TEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQ 322

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
             + E A + F RL +  S  PN  +   VL AC +   +  G+   +  I   + + + 
Sbjct: 323 SNQNEQAFELFLRL-MRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 381

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                L+D  A+  ++D +L + S++    + V W +++
Sbjct: 382 VG-NALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNTIV 418



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   H +++R      + D+   N L++MY K G L  AR++F+ MP+R++ S+ +++  
Sbjct: 78  GRAVHGHVVRRGGVGRL-DLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQA 136

Query: 314 FALHGRAEAALKYFDRLVVE 333
            A  G  EAA   F RL  E
Sbjct: 137 HAQRGDFEAAAALFRRLRWE 156


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/620 (36%), Positives = 332/620 (53%), Gaps = 60/620 (9%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           + ++  SSLT C  +  L   KQ+HA+ +R+ LPQ      + S +I  +A       A 
Sbjct: 269 DSTTYTSSLTACARLFSLGWGKQLHAKVIRS-LPQIDP--YVASALIELYAKCGSFKEAK 325

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           RVF  +++ NS +W  LI   +   +   +++ LF +M  +   + D+      +  C  
Sbjct: 326 RVFNSLQDRNSVSWTVLIGG-SLQYECFSKSVELFNQMRAELMAI-DQFALATLISGCFN 383

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW--- 204
                 G+Q H+   K G    + ++NSLI  YA CG L  A  VF +M ER +VSW   
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 205 ----------------------------NVMIDAFVQFGEFDSALKLFRRM--QILFEPD 234
                                       N M+ A++Q G  +  LK++  M  Q    PD
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
             T+ ++   CA +    LG     + ++     L+ +V V N+ I MY KCG +  A++
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKA---GLILNVSVANAAITMYSKCGRISEAQK 560

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           +F+ +  +D+ SWN++I G++ HG  + A K FD ++  +   P+ I++V VLS C+H G
Sbjct: 561 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDML-SKGAKPDYISYVAVLSGCSHSG 619

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V EG+ YFD+M   + I+P LEH+ C+VDLL RAG++ EA  L+  MPMKP A +W +L
Sbjct: 620 LVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGAL 679

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L AC K H +  L+E  AK V E +    SG Y+LL+++Y+ A + +D   VRKLM DKG
Sbjct: 680 LSAC-KIHGNDELAELAAKHVFELDSPD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 737

Query: 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
           + K PG S +E++   H F A D SHPQ   I   LD + EK+   GY    S  + +  
Sbjct: 738 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEIH- 796

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
                      HSE+LA+A GI++L   MPI + KNLR+C DCH V KLIS + + E ++
Sbjct: 797 -----------HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 845

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RD  RFHHFK GSCSC DYW
Sbjct: 846 RDGVRFHHFKSGSCSCGDYW 865



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 11/304 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  +A    +D+A   F  +   +  +WN +I A ++S   + +A+ L   M  +G V
Sbjct: 209 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVR-EALGLVVEMHRKG-V 266

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             D  T+  +L ACA LF+   GKQ HA + +     D Y+ ++LI  YA CG    A +
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           VF+++ +R+ VSW V+I   +Q+  F  +++LF +M+  L   D +   ++ S C     
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H+  L+   +     ++V+NSLI +Y KCG L  A  VF SM +RD+ SW S+
Sbjct: 387 LCLGRQLHSLCLKSGHNRA---IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I  ++  G    A ++FD +        N+IT+  +L A    G   +G   +  M+++ 
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTR-----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 371 NITP 374
           ++TP
Sbjct: 499 DVTP 502



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 165/377 (43%), Gaps = 47/377 (12%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLP 133
           +A    L  A  +F ++   +  +WNTL+       R +D     +  F  M   G+ LP
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDG----LETFVSMHRSGDSLP 136

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +  TF   +K+C  L       Q     +K     D  +  +L+  +  CG++D A+++F
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 194 -------------------------------DNMLERSLVSWNVMIDAFVQFGEFDSALK 222
                                          ++M ER +VSWN+MI A  Q G    AL 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 223 LFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           L   M +     D  T+ S  +ACA L +L  G   HA ++R        D  V ++LI+
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQ---IDPYVASALIE 313

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           +Y KCGS   A++VF S+  R+  SW  +I G   +     +++ F+++   E  + +  
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQF 372

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
               ++S C +R  +  GR    + +   +N   V+ +   L+ L A+ G++  A  + S
Sbjct: 373 ALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQNAEFVFS 430

Query: 401 NMPMKPDAVIWRSLLDA 417
           +M  + D V W S++ A
Sbjct: 431 SMSER-DIVSWTSMITA 446



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 135/345 (39%), Gaps = 81/345 (23%)

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK--------- 191
           AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L  A +         
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 192 -----------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                                  +FD M  R + SWN ++  + Q   F   L+ F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 229 ILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
              +  P+ +TF  +  +C  L    L   A   +          D  V  +L+DM+ +C
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCREL---APQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 287 GSLDIARQV-------------------------------FESMPKRDLTSWNSIILGFA 315
           G +D A ++                               FE M +RD+ SWN +I   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 316 LHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
             GR   AL     LVVE   +    +S T+   L+AC     +  G+     +I     
Sbjct: 247 QSGRVREALG----LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL-- 300

Query: 373 TPVLEHY--GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            P ++ Y    L++L A+ G+  EA  + +++  + ++V W  L+
Sbjct: 301 -PQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLI 343


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 334/590 (56%), Gaps = 24/590 (4%)

Query: 35   SLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            +L+SSL+ C  +  L   +Q+H  A++  L        +  ++  +     +   ++VF 
Sbjct: 483  ALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKM--YGECGAMSDYWKVFN 540

Query: 92   QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
             +   +  +WNT++   A S     + + +F  M+ +G ++P+K TF   L A + L   
Sbjct: 541  SMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMM-RGGLIPNKVTFINLLAALSPLSVL 599

Query: 152  SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVSWNVMIDA 210
              GKQ HA + K G++ D  ++N+LI  YA  G +     +F NM +R   +SWN MI  
Sbjct: 600  ELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISG 659

Query: 211  FVQFGEFDSALKLFRRM----QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
            ++  G    A+     M    QI+   D  TF  I +ACA +A L  GM  HA+ +R   
Sbjct: 660  YIYNGNLQEAMDCVWLMIHSGQIM---DCCTFSIILNACASVAALERGMELHAFGIRS-- 714

Query: 267  HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
              L +DV+V ++L+DMY KCG +D A ++F SM +R+  SWNS+I G+A HG    A++ 
Sbjct: 715  -HLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEI 773

Query: 327  FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
            F+ ++     SP+ +TFV VLSAC+H G+V  G +YF+ M+ ++ I P +EHY C++DLL
Sbjct: 774  FEEMLRSRE-SPDHVTFVSVLSACSHAGLVERGLEYFE-MMPDHGILPQIEHYSCVIDLL 831

Query: 387  ARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC--CKKHASVVLSEEVAKQVIESEGGICS 444
             RAG ID+    +  MP++P+A+IWR++L AC   K  +++ L  E ++ ++E E     
Sbjct: 832  GRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPV 891

Query: 445  GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
              YVL S  +A+   W D    R  M      KE G S + ++   H F AGD SHP TK
Sbjct: 892  N-YVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTK 950

Query: 505  QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
            +IY  L+ + + +++ GY P  ++ A+ D  ++ K+  L  HSE+LAIA  +L      P
Sbjct: 951  EIYEKLNFLIQNIRNAGYVP-LTEYALYDLEEENKEELLSYHSEKLAIAF-VLTRSSSGP 1008

Query: 565  IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLRVC DCH   + IS++ + +II+RD  RFHHFKDG CSC DYW
Sbjct: 1009 IRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 190/408 (46%), Gaps = 20/408 (4%)

Query: 20  IFNNNRNEGSFN--NHSSLLSSLTECKSMSQL-----KQIHAQALRTALPQQHKTLLIYS 72
           IF   RN    N   +  LLS+L E  S+S+      + +H   LRT L    K  +   
Sbjct: 363 IFVGTRNTVDVNADTYVVLLSALAE-YSISEEGLRIGRVVHGHMLRTGLTDL-KIAVSNG 420

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            +  +A    ++ A ++F  +E  +  +WNT+I A  +  +   +  V+   ++ Q  + 
Sbjct: 421 LVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQ--NGNCEEAVMHYSLMRQSCIS 478

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P       +L +CA L   + G+Q H    K GL  D  ++N L+  Y  CG +    KV
Sbjct: 479 PSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKV 538

Query: 193 FDNMLERSLVSWNVMIDAFVQF-GEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLAT 250
           F++M E   VSWN M+             +K+F   M+    P+  TF ++ +A + L+ 
Sbjct: 539 FNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSV 598

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNS 309
           L LG   HA +++   H ++ D +V+N+LI  Y K G +     +F +M  +RD  SWNS
Sbjct: 599 LELGKQVHAAVMK---HGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNS 655

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I G+  +G  + A+     L++      +  TF  +L+AC     +  G +     I  
Sbjct: 656 MISGYIYNGNLQEAMDCV-WLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRS 714

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +  + V+     LVD+ ++ G +D A  L ++M  + +   W S++  
Sbjct: 715 HLESDVVVE-SALVDMYSKCGRVDYASKLFNSMTQR-NEFSWNSMISG 760



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 154/314 (49%), Gaps = 13/314 (4%)

Query: 6   VQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALP 62
           V     TP +    +FNN    G   N  + ++ L     +S L   KQ+HA  ++  + 
Sbjct: 556 VMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVM 615

Query: 63  QQHKTLLIYSRIIHFASFADLDYAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVL 121
           + +  ++  + I  +A   D+     +F  + +  ++ +WN++I     + + + +A+  
Sbjct: 616 EDN--VVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ-EAMDC 672

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
              MI  G ++ D  TF   L ACA + A  +G + HA   +  L SDV + ++L+  Y+
Sbjct: 673 VWLMIHSGQIM-DCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYS 731

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQS 240
            CG +D A+K+F++M +R+  SWN MI  + + G    A+++F  M    E PD  TF S
Sbjct: 732 KCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVS 791

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + SAC+    +  G+    Y     DH ++  +   + +ID+  + G +D  ++  + MP
Sbjct: 792 VLSACSHAGLVERGL---EYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMP 848

Query: 301 -KRDLTSWNSIILG 313
            + +   W ++++ 
Sbjct: 849 IEPNALIWRTVLVA 862



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 19/287 (6%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  + KRGL  D+++ N L++ YA    L  A++VFD M ER+ VSW  ++  +V  G  
Sbjct: 84  HVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIA 143

Query: 218 DSALKLFRRM----QILFEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHSLVT 271
           + A ++FR M    Q    P  +TF ++  AC   G   L   +  H  + +       +
Sbjct: 144 EEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSK---TEYAS 200

Query: 272 DVLVNNSLIDMY--CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           +  V N+LI MY  C  G   +A++VF+  P RDL +WN+++  +A  G   +    F  
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 330 LVVEES---FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           +   +S     P   TF  +++A +     S   D   V + +   +  L     LV   
Sbjct: 261 MQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAF 320

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           AR G  DEA  +  ++  K +AV    L+    ++      SEE  K
Sbjct: 321 ARHGLTDEAKDIFLSLKQK-NAVTLNGLIVGLVRQD----FSEEAVK 362



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 176/401 (43%), Gaps = 25/401 (6%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           H+ LL  L      +  + +H + ++  L   H   L    +  +A  A L  A +VF +
Sbjct: 64  HADLLPLLRRGGDANSPENLHVELIKRGL--NHDLFLCNHLVNSYAKGARLAAASQVFDE 121

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE--QGNVLPDKHTFPFALKACAYLFA 150
           +   N+ +W  L+        A+ +A  +F+ M+   Q    P   TF   L+AC     
Sbjct: 122 MPERNAVSWTCLVSGYVLHGIAE-EAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGP 180

Query: 151 FSQG--KQAHAHIFKRGLVSDVYINNSLIHFYASC--GHLDLANKVFDNMLERSLVSWNV 206
              G   Q H  + K    S+  + N+LI  Y SC  G   LA +VFD    R L++WN 
Sbjct: 181 DRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNA 240

Query: 207 MIDAFVQFGEFDSALKLFRRMQ-----ILFEPDGYTFQS-ITSACAGLATLSLGMWAHAY 260
           ++  + + G+  S   LF+ MQ     I   P  +TF S IT+A     + ++      +
Sbjct: 241 LMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVW 300

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           +L+       +D+ V ++L+  + + G  D A+ +F S+ +++  + N +I+G      +
Sbjct: 301 VLK---SGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFS 357

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE----GRDYFDVMINEYNITPVL 376
           E A+K F  +    +   N+ T+V +LSA     +  E    GR     M+        +
Sbjct: 358 EEAVKIF--VGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKI 415

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                LV++ A+ G I+ A  +   M    D + W +++ A
Sbjct: 416 AVSNGLVNMYAKCGAIESASKIFQLME-ATDRISWNTIISA 455


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/582 (36%), Positives = 340/582 (58%), Gaps = 15/582 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-DYAFRVFYQIE 94
           LL    + +S    +  HAQ +R  L      +L  + +I+  S   L D A + F ++ 
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMD---ILTSNMLINMYSKCSLVDSARKKFNEMP 105

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  +WNT+I A  ++ + + +A+ L  +M  +G    ++ T    L  CA+  A  + 
Sbjct: 106 VKSLVSWNTVIGALTQNAEDR-EALKLLIQMQREGTPF-NEFTISSVLCNCAFKCAILEC 163

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
            Q HA   K  + S+ ++  +L+H YA C  +  A+++F++M E++ V+W+ M+  +VQ 
Sbjct: 164 MQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQN 223

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  + AL +FR  Q++ F+ D +   S  SACAGLATL  G   HA  + H      +++
Sbjct: 224 GFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHA--ISH-KSGFGSNI 280

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            V++SLIDMY KCG +  A  VF+ + + R +  WN++I GFA H RA  A+  F+++  
Sbjct: 281 YVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQ- 339

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +  F P+ +T+V VL+AC+H G+  EG+ YFD+M+ ++N++P + HY C++D+L RAG +
Sbjct: 340 QRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLV 399

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
            +A  L+  MP    + +W SLL A CK + ++  +E  AK + E E    +G ++LL+ 
Sbjct: 400 HKAYDLIERMPFNATSSMWGSLL-ASCKIYGNIEFAEIAAKYLFEMEPNN-AGNHILLAN 457

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA+ ++W++V   RKL+ +  V KE G S IEI    H F  G+ +HPQ   IY  LD 
Sbjct: 458 IYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDN 517

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           +  +LK   Y  D S   + D  ++ KQ  LR HSE+LAI  G++ L   +PIR+ KNLR
Sbjct: 518 LVVELKKLNYKVDTSND-LHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLR 576

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +C DCH   KL+S+  + EIIVRD  RFHHFKDG CSC ++W
Sbjct: 577 ICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 337/609 (55%), Gaps = 28/609 (4%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL------- 69
           S+ +  N+   G  N+   +  S+T   +++    +   + R    +  + L        
Sbjct: 8   SNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPD 67

Query: 70  IYSRIIHFASF---ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
           I+S  I  A +   AD++ A   F Q+   ++ +WNT+I   +++     QA  LF    
Sbjct: 68  IFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQN-GMMDQARELFL--- 123

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
               V+P +++  +      Y+   S        +F+   V  V    ++I  +   G +
Sbjct: 124 ----VMPVRNSVSWNAMISGYVE--SGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKI 177

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC 245
           +LA K F+ M  ++LV+WN MI  +++  + ++ LKLF+RM +  F P+  +  S+   C
Sbjct: 178 ELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGC 237

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           + L+ L LG   H  I   C   +  ++    SL+ MYCKCG L+ A ++F  MP++D+ 
Sbjct: 238 SNLSALKLGKQVHQLI---CKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVV 294

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +WN++I G+A HG  E AL  FD++  +E   P+ ITFV VLSACNH G V  G +YF+ 
Sbjct: 295 TWNAMISGYAQHGAGEKALYLFDKMR-DEGMKPDWITFVAVLSACNHAGFVDLGIEYFNS 353

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M+ +Y +    +HY C+VDLL R G + EA+ L+  MP KP + I+ +LL AC + H ++
Sbjct: 354 MVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGAC-RIHKNL 412

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L+E  AK ++  +    +G YV L+ VYA+  RW+ V +VR+ M D  V K PG S IE
Sbjct: 413 ELAEFAAKNLLNLDPESAAG-YVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIE 471

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           +  + HEF +GD  HP+   I+  L+ ++ K++  GY PD  + A+ D  ++ K+  L  
Sbjct: 472 VKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDL-EYALHDVGEEQKKQILLR 530

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G++ +  G PIRVFKNLRVC DCH  TK IS I    IIVRD  RFHHF+ 
Sbjct: 531 HSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQ 590

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 591 GECSCGDYW 599



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 134/309 (43%), Gaps = 68/309 (22%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV-QFGEFDSALKLFRR 226
           S+V  +N +I  +   G L+ A +VF++M  ++ V+WN M+  +  + G+   A +LF R
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 227 MQILFEPDGYTFQSITSAC----------------------AGLATLSLGMWAHAYILRH 264
           +    EPD +++ +I  AC                      A   T+  G   +  + + 
Sbjct: 63  IP---EPDIFSY-NIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQA 118

Query: 265 CDHSLVTDV---LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            +  LV  V   +  N++I  Y + G LD+A+Q+FE  P R + +W ++I GF   G+ E
Sbjct: 119 RELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIE 178

Query: 322 AALKYFDRL------------------------------VVEESFSPNSITFVGVLSACN 351
            A KYF+ +                              +VE  F PN  +   VL  C+
Sbjct: 179 LAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCS 238

Query: 352 HRGMVSEGRDYFDVMIN---EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           +   +  G+    ++      +NIT        L+ +  + G++++A  L   MP K D 
Sbjct: 239 NLSALKLGKQVHQLICKSPVSWNITAGTS----LLSMYCKCGDLEDAWKLFLVMPQK-DV 293

Query: 409 VIWRSLLDA 417
           V W +++  
Sbjct: 294 VTWNAMISG 302


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 305/517 (58%), Gaps = 13/517 (2%)

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +W +LI   A+  +  P   +     + +G   P+  TF   LKA     +   G+Q HA
Sbjct: 8   SWTSLIAGYAQ--NDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 65

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
              K     DVY+ ++L+  YA CG +D+A  VFD +  ++ VSWN +I  F + G+ ++
Sbjct: 66  LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 125

Query: 220 ALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
            L +F  MQ   FE   +T+ S+ SA AG+  L  G W HA++++  +        V N+
Sbjct: 126 TLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGER---LSAFVGNT 182

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           ++DMY K GS+  AR+VF+ + K+DL +WNS++  FA +G    A+ +F+ +  +     
Sbjct: 183 ILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMR-KCGVHL 241

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N ITF+ +L+AC+H G+V EG+ YFD M+ E+N+ P ++HY  +VDLL RAG +++AL  
Sbjct: 242 NQITFLSILTACSHGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVF 300

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MPMKP A +W +LL   C+ H +  + +  A  V E +    +G  VLL  +YAS  
Sbjct: 301 IFKMPMKPTAAVWGALL-GSCRMHKNAKIGQFAADHVFELDPDD-TGPPVLLYNIYASTG 358

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           +W+    VRK+M   GV KEP CS +EI+   H F A D +HP++++IY   + I  +++
Sbjct: 359 QWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIR 418

Query: 519 SRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
             GY P+     + VDE +  +Q+ L+ HSE++A+A  ++N+  G  IR+ KN+R+C DC
Sbjct: 419 KAGYVPNTDYVLLHVDEQE--RQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDC 476

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H   + IS++F  EI+VRD  RFHHF  GSCSC DYW
Sbjct: 477 HSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           +SLL +     S    +QIHA  ++      H  + + S ++  +A    +D A  VF Q
Sbjct: 45  ASLLKAAGASASSGIGEQIHALTVKY---DWHDDVYVGSALLDMYARCGRMDMAIAVFDQ 101

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLFAF 151
           +E+ N  +WN LI   AR  D +   +++F  M  Q N     H T+     A A + A 
Sbjct: 102 LESKNGVSWNALIAGFARKGDGET-TLLMFAEM--QRNGFEATHFTYSSVFSAIAGIGAL 158

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            QGK  HAH+ K G     ++ N+++  YA  G +  A KVFD++ ++ LV+WN M+ AF
Sbjct: 159 EQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAF 218

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q+G    A+  F  M+      +  TF SI +AC+    +  G     Y     +H+L 
Sbjct: 219 AQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG---KQYFDMMKEHNLE 275

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAE 321
            ++    +++D+  + G L+ A      MP +   + W +++    +H  A+
Sbjct: 276 PEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAK 327



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           M  RD+ SW S+I G+A +   + AL      ++   F PN  TF  +L A         
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLL-LGMLRGRFKPNGFTFASLLKAAGASASSGI 59

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G     + + +Y+    +     L+D+ AR G +D A+ +   +  K + V W +L+   
Sbjct: 60  GEQIHALTV-KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAGF 117

Query: 419 CKK---HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
            +K     ++++  E+ +   E+     S V+  ++ + A
Sbjct: 118 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGA 157


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 308/531 (58%), Gaps = 13/531 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  VF ++ + +  +W  LI   A++     +AI L   M+ +    P+  TF   LKA 
Sbjct: 11  ARHVFDKMPSRDVVSWTYLIAGYAQNY-MPAEAIGLLPDML-RARFRPNGFTFTSLLKAT 68

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
                 S G+Q HA   K     DVY+ ++L+  YA C  +D+A  VFD ++ ++ VSWN
Sbjct: 69  GACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWN 128

Query: 206 VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  F +  + ++ L  F  MQ   F    +T+ S+ SA A +  L  G W HA++++ 
Sbjct: 129 ALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKS 188

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                     V N+++ MY K GS+  AR+VF+ M KRDL +WN+++   A +G  + A+
Sbjct: 189 GQK---LTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAV 245

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
            +F+  + +     N ITF+ VL+AC+H G+V EG+ YFD M+ +YN+ P ++HY   VD
Sbjct: 246 AHFEE-IRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVD 303

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL RAG + EAL  V  MPM+P A +W +LL AC + H +  + +  A  V E +    +
Sbjct: 304 LLGRAGLLKEALIFVFKMPMEPTAAVWGALLGAC-RMHKNAKMGQYAADHVFELDPDD-T 361

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G  VLL  +YAS  +WND   VRK+M   GV KEP CS ++I+   H F A D +HP++ 
Sbjct: 362 GPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSG 421

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
            IY   + I+ ++K  GY P+ +   + ++E +  +++ L+ HSE++A+A  ++N+  G 
Sbjct: 422 DIYRMWEEINMRIKKAGYVPNTAHVLLHINEQE--RETKLKYHSEKIALAFALINMPAGA 479

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KN+R+C DCH   K +S++F  EI+VRD  RFHHF +GSCSC DYW
Sbjct: 480 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTF 238
           Y  CG +  A  VFD M  R +VSW  +I  + Q      A+ L   M +  F P+G+TF
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            S+  A       S+G   HA  ++   ++   DV V ++L+DMY +C  +D+A  VF+ 
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVK---YNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 118

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           +  ++  SWN++I GFA     E  L  F  +     F     T+  + SA    G + +
Sbjct: 119 LVSKNEVSWNALIAGFARKADGETTLMKFAEM-QRNGFGATHFTYSSMFSAFARIGALEQ 177

Query: 359 GRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           GR     +I     +T  + +   ++ + A++G++ +A  +   M  K D V W ++L A
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 234



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MYCKCG++  AR VF+ MP RD+ SW  +I G+A +     A+     + +   F PN  
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM-LRARFRPNGF 59

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TF  +L A    G  S G     + + +YN    +     L+D+ AR   +D A+ +V +
Sbjct: 60  TFTSLLKATGACGGCSIGEQMHALAV-KYNWDEDVYVGSALLDMYARCEQMDMAI-MVFD 117

Query: 402 MPMKPDAVIWRSLLDACCKK 421
             +  + V W +L+    +K
Sbjct: 118 RLVSKNEVSWNALIAGFARK 137


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/621 (36%), Positives = 332/621 (53%), Gaps = 62/621 (9%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           + ++  SSLT C  +  L   KQ+HA+ +R+ LPQ      + S +I  +A       A 
Sbjct: 259 DSTTYTSSLTACARLFSLGWGKQLHAKVIRS-LPQIDP--YVASALIELYAKCGSFKEAK 315

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           RVF  +++ NS +W  LI   +   +   +++ LF +M  +   + D+      +  C  
Sbjct: 316 RVFNSLQDRNSVSWTVLIGG-SLQYECFSKSVELFNQMRAELMAI-DQFALATLISGCFN 373

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW--- 204
                 G+Q H+   K G    + ++NSLI  YA CG L  A  VF +M ER +VSW   
Sbjct: 374 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 433

Query: 205 ----------------------------NVMIDAFVQFGEFDSALKLFRRM--QILFEPD 234
                                       N M+ A++Q G  +  LK++  M  Q    PD
Sbjct: 434 ITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 493

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
             T+ ++   CA +    LG      I+ H     L+ +V V N+ I MY KCG +  A+
Sbjct: 494 WVTYVTLFRGCADIGANKLG----DQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQ 549

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F+ +  +D+ SWN++I G++ HG  + A K FD ++  +   P+ I++V VLS C+H 
Sbjct: 550 KLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDML-SKGAKPDYISYVAVLSGCSHS 608

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V EG+ YFD+M   + I+P LEH+ C+VDLL RAG++ EA  L+  MPMKP A +W +
Sbjct: 609 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 668

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL AC K H +  L+E  AK V E +    SG Y+LL+++Y+ A + +D   VRKLM DK
Sbjct: 669 LLSAC-KIHGNDELAELAAKHVFELDSPD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 726

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           G+ K PG S +E++   H F A D SHPQ   I   +D + EK+   GY    S  + + 
Sbjct: 727 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIH 786

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
                       HSE+LA+A GI++L   MPI + KNLR+C DCH V KLIS + + E +
Sbjct: 787 ------------HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFV 834

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           +RD  RFHHFK GSCSC DYW
Sbjct: 835 IRDGVRFHHFKSGSCSCGDYW 855



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 11/304 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  +A    +D+A   F  +   +  +WN +I A ++S   + +A+ L   M  +G V
Sbjct: 199 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVR-EALGLVVEMHRKG-V 256

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             D  T+  +L ACA LF+   GKQ HA + +     D Y+ ++LI  YA CG    A +
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           VF+++ +R+ VSW V+I   +Q+  F  +++LF +M+  L   D +   ++ S C     
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 376

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H+  L+   +     ++V+NSLI +Y KCG L  A  VF SM +RD+ SW S+
Sbjct: 377 LCLGRQLHSLCLKSGHNRA---IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 433

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I  ++  G    A ++FD +        N+IT+  +L A    G   +G   +  M+++ 
Sbjct: 434 ITAYSQIGNIIKAREFFDGMATR-----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 488

Query: 371 NITP 374
           ++TP
Sbjct: 489 DVTP 492



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 182/401 (45%), Gaps = 38/401 (9%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
            ++LL +   C ++S  +++    ++      H  ++       +A    L  A  +F +
Sbjct: 58  QNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMN-----GYAKQGSLSDAEELFDR 112

Query: 93  IENPNSFTWNTLIRACARSVDA------------KPQAIVLFQRMIEQGNVLPDKHTFPF 140
           +   +  +WNTL+   +R   +             PQ + LF +    G+  PD  T   
Sbjct: 113 MPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGD--PDVETALV 170

Query: 141 ALKA-CAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
            +   C Y+ FA        + +F +     ++  NS++  YA    +D A + F++M E
Sbjct: 171 DMFVRCGYVDFA--------SRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAE 222

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWA 257
           R +VSWN+MI A  Q G    AL L   M +     D  T+ S  +ACA L +L  G   
Sbjct: 223 RDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL 282

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HA ++R        D  V ++LI++Y KCGS   A++VF S+  R+  SW  +I G   +
Sbjct: 283 HAKVIRSLPQ---IDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQY 339

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVL 376
                +++ F+++   E  + +      ++S C +R  +  GR    + +   +N   V+
Sbjct: 340 ECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 398

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            +   L+ L A+ G++  A  + S+M  + D V W S++ A
Sbjct: 399 SN--SLISLYAKCGDLQNAEFVFSSMSER-DIVSWTSMITA 436



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 139/316 (43%), Gaps = 49/316 (15%)

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD-NMLER 199
           AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L  A ++   ++ E 
Sbjct: 26  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 85

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG--LATLSLGM-- 255
           ++++ N+M++ + + G    A +LF RM         T  S TS  AG  ++  +LG   
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRE 145

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV-------------------- 295
            A   +          D  V  +L+DM+ +CG +D A ++                    
Sbjct: 146 LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYA 205

Query: 296 -----------FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE---ESFSPNSI 341
                      FE M +RD+ SWN +I   +  GR   AL     LVVE   +    +S 
Sbjct: 206 KLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG----LVVEMHRKGVRLDST 261

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLARAGNIDEALHLV 399
           T+   L+AC     +  G+     +I      P ++ Y    L++L A+ G+  EA  + 
Sbjct: 262 TYTSSLTACARLFSLGWGKQLHAKVIRSL---PQIDPYVASALIELYAKCGSFKEAKRVF 318

Query: 400 SNMPMKPDAVIWRSLL 415
           +++  + ++V W  L+
Sbjct: 319 NSLQDR-NSVSWTVLI 333


>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
 gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
          Length = 552

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/536 (39%), Positives = 319/536 (59%), Gaps = 16/536 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQ------HKTLLIYSRIIHFASFADLDYAFRV 89
           ++S L  C+ +  L+  HA   R  LP+        K L   +      + A   YA  +
Sbjct: 21  VVSLLRGCRGLLALRSAHAHLTRLRLPRLTAAFALSKLLAACASAPAPPAAAASSYARTL 80

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F QI +P +F +N+LIRA   +  A   A+ +++ M+  G+  P+  T  FALKACA + 
Sbjct: 81  FDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACAAVP 140

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVMI 208
           A  +G+Q HA   ++GL +  Y+   L++ YA C  + LA  VFD M  ++SLV+W+ MI
Sbjct: 141 APGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMI 200

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           + + + G    AL LFR MQ +  EPD  T   + SACA    L LG W HAYI R    
Sbjct: 201 NGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDR---K 257

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
            +  D+ ++ +LIDMY KCG ++ AR VF++M ++D  +W+++I+GFA+HG  E AL  F
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            R+ +E    PN++TF+GVLSAC H G+V +GR Y+ +M N   I P +E+YGC++DLL 
Sbjct: 318 SRM-LELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQN-LGIKPSMENYGCMIDLLC 375

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           R+G +D+A   V +MP+ P+++IWR+LL A CK    + ++E  +K+++E E       Y
Sbjct: 376 RSGLLDDAYSFVIDMPISPNSIIWRTLLVA-CKSSNRIDIAESASKRLLELEPHNPEN-Y 433

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS + AS  +W+ V  +RK M D  VT   GCSSIEI+G  HEF   D SHP+ K+I 
Sbjct: 434 VLLSNLCASNSQWDRVSYLRKKMKDSNVTAVAGCSSIEINGYLHEFVVSDDSHPEIKEIR 493

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
             L  I ++++  G+ P ++ A + D  ++ K+ +L  HSERLAIA G+L  K  M
Sbjct: 494 LVLREIADRVRRAGHKP-WTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPM 548


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 324/574 (56%), Gaps = 24/574 (4%)

Query: 51  QIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           Q+H  ALR+ L    P     LL    + H  S   +D A R F +I +PN      +  
Sbjct: 114 QLHLLALRSGLFPSDPYSASALL---HMYHHCS-RPMD-ARRAFDEIPDPNPVIVTAMAS 168

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNV-LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              R+ +    ++ LF+ MI   +  + D+     A  A A +         HA I K G
Sbjct: 169 GYVRN-NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIG 227

Query: 166 LVSDVYINNSLIHFYASCGHLDL--ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
              +  + N+++  YA  G  DL  A KVFD M ER +VSWN MI  + Q G    A+ L
Sbjct: 228 FERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGL 286

Query: 224 FRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           + +M  +    + +     ++  ACA    +  G   H  ++R     L  +V V  S++
Sbjct: 287 YSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRM---GLEENVYVGTSIV 343

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
           DMY KCG +++A + F  + ++++ SW+++I G+ +HGR + AL+ F  +       PN 
Sbjct: 344 DMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMK-RSGLRPNY 402

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           ITF+ VL+AC+H G++ EGR +++ M  E+ I   +EHYGC+VDLL RAG +DEA  L+ 
Sbjct: 403 ITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIK 462

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
            M +KPDA IW +LL AC + H +V L+E   K++ E +    SG YVLLS +YA AR W
Sbjct: 463 EMKVKPDAAIWGALLSAC-RIHKNVELAEMSVKRLFELDAS-NSGYYVLLSNIYAEARMW 520

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
            DV  +R L+  + + K PG SS E+ G  + F+ GD SHPQ  +IY +L+ + E+++  
Sbjct: 521 KDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEA 580

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY P+ + + + D  ++ K+S+LR+HSE+LA+A  ++N  P   I + KNLRVC DCH  
Sbjct: 581 GYVPN-TGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTA 639

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K I++I   EII+RD  RFHHFKDG CSC DYW
Sbjct: 640 MKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 320/607 (52%), Gaps = 78/607 (12%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +++  +   A  +F +    N   +N +IR+   + +   +A+ +FQ M+      PD +
Sbjct: 81  YSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN-NLYVEALSIFQVMLSCA-FNPDHY 138

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN----------------------- 173
           TFP  LKAC+ L     G Q H  I K GL ++++I                        
Sbjct: 139 TFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQM 198

Query: 174 --------NSLIHFYASCGHLDLA------------------------------------ 189
                   NS++  YA  G  D A                                    
Sbjct: 199 PYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQY 258

Query: 190 -NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
            + +F+ M +++L+SWNVMI  +V     + A+ LF +M+    +PD  T  S+  AC  
Sbjct: 259 IHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGD 318

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L+ L LG   H YI +    +L  ++L+ N+L+DMY KCG L+ AR VF+ M  RD+ SW
Sbjct: 319 LSALFLGRRLHKYIEKG---NLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSW 375

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            S++  +   G+   A+  F +++ +   +P+SI FV VLSAC+H G++ +GR YF +M 
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKML-DSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMT 434

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            +Y I P +EH+ C+VDL  RAG ++EA   +  MPM+P+  +W +LL AC + H+ + +
Sbjct: 435 EQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC-RVHSKMDI 493

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
              VA  ++       SG YVLLS +YA A  W DV  VR  M   G+ K PG S++E++
Sbjct: 494 GL-VAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELN 552

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
           G  H F AGD  HPQ K IYG LD++  K+K  GY P    A    E++D K+  L +HS
Sbjct: 553 GQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVED-KECHLAIHS 611

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           E+LAI   ILN K G PIR+ KNLRVC DCH   KLIS+I +  IIVRD  RFHHF +G 
Sbjct: 612 EKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGI 671

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 672 CSCGDYW 678



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 15/249 (6%)

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPD 234
           L+  Y++ G   +A  +FD  LE+++V +NVMI ++V    +  AL +F+ M    F PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            YTF  +  AC+GL  L +G+  H  I++     L T++ + N+L+ MY KCG L  AR+
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVK---VGLDTNLFIGNALVAMYGKCGCLREARK 193

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           V + MP RD+ SWNS++ G+A  G+ + AL+     + +E  S N     G +++ +   
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALE-----ICKEMDSLNLNHDAGTMASLSPVV 248

Query: 355 MVS--EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAV 409
             +  E   Y   M  E      L  +  ++ +       +EA+ L   M    MKPDAV
Sbjct: 249 CYTSLENVQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAV 307

Query: 410 IWRSLLDAC 418
              SLL AC
Sbjct: 308 TIASLLPAC 316


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/567 (36%), Positives = 314/567 (55%), Gaps = 43/567 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A   F  +   +  +WN++I  C +      +A+  F  +++  ++ PD+ +   AL
Sbjct: 189 VDLALAQFELLSERDIVSWNSMIAGCNQH-GFDNEALQFFSSILKDTSLKPDRFSLASAL 247

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV---------- 192
            ACA L   S GKQ H +I +    +   + N+LI  YA  G +++A ++          
Sbjct: 248 SACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLD 307

Query: 193 -----------------------FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-Q 228
                                  F+++ +  +V+W  MI  +VQ G  + A+++F+ M  
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS 367

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               P+ +T  ++ SA + + +L+ G   HA  +R  +        V N+L  MY K GS
Sbjct: 368 EGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGE---ALSPSVGNALTTMYAKAGS 424

Query: 289 LDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           ++ AR+VF  + + RD  SW S+I+  A HG  E A++ F++++      P+ IT+VGVL
Sbjct: 425 INGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTL-GIKPDHITYVGVL 483

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SAC H G+V +GR YFD+M N + I P L HY C+VDL  RAG + EA   V NMPM+PD
Sbjct: 484 SACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPD 543

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
            + W SLL + CK + +V L++  A++++  E    SG Y  L+ VY+S  +W+D   +R
Sbjct: 544 VIAWGSLLSS-CKVYKNVDLAKVAAERLLLIEPN-NSGAYSALANVYSSCGKWDDAAKIR 601

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           KLM  +GV KE G S ++I    H F   D  HPQ  +IY  +D I +++K  G+ PD +
Sbjct: 602 KLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPD-T 660

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           ++ + D   + K   LR HSE+LAIA GI++      +R+ KNLRVC DCH   K IS++
Sbjct: 661 ESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKL 720

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + EIIVRD  RFHHFKDGSCSC DYW
Sbjct: 721 VDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 187/420 (44%), Gaps = 70/420 (16%)

Query: 66  KTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR 124
           KT   ++ I+  +A    L+ A +VF  I   +S +W T+I    + +     AI +F  
Sbjct: 39  KTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQ-MGRFEDAIKIFVD 97

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M++   VLP + T    L +CA   +   GK+ H+ + K GL + V + NSL++ YA  G
Sbjct: 98  MVKD-KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTG 156

Query: 185 HLDLANKVFDNML-------------------------------ERSLVSWNVMIDAFVQ 213
            L +A  VFD M                                ER +VSWN MI    Q
Sbjct: 157 DLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQ 216

Query: 214 FGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH------- 264
            G  + AL+ F  +      +PD ++  S  SACA L  LS G   H YI+R        
Sbjct: 217 HGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGA 276

Query: 265 CDHSLVT-----------------------DVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             ++L++                       DV+   +L++ Y K G +  ARQ+F S+  
Sbjct: 277 VGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKD 336

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
            D+ +W ++I+G+  +G    A++ F + +V E   PNS T   +LSA +    ++ G+ 
Sbjct: 337 PDVVAWTAMIVGYVQNGLNNDAIEVF-KTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQ 395

Query: 362 YFDVMINEYN-ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
                I     ++P + +   L  + A+AG+I+ A  + + +    D V W S++ A  +
Sbjct: 396 IHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQ 453



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 49/299 (16%)

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           +F    V   +  N+++  YA  G L+ A++VFD +  R  VSW  +I  + Q G F+ A
Sbjct: 32  LFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDA 91

Query: 221 LKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           +K+F  M   ++L  P  +T  ++ ++CA   +  +G   H+++++   H+ V    V N
Sbjct: 92  IKIFVDMVKDKVL--PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVP---VAN 146

Query: 278 SLIDMYCK-------------------------------CGSLDIARQVFESMPKRDLTS 306
           SL++MY K                               CG +D+A   FE + +RD+ S
Sbjct: 147 SLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVS 206

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WNS+I G   HG    AL++F  ++ + S  P+  +    LSAC +   +S G+      
Sbjct: 207 WNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQ----- 261

Query: 367 INEYNITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPMKP-DAVIWRSLLDACCK 420
           I+ Y +  + +  G     L+ + A++G ++ A  ++    +   D + + +LL+   K
Sbjct: 262 IHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVK 320



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 42/354 (11%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRT-------------ALPQQHKTLLIYSRIIHFA 78
           SL S+L+ C ++ +L   KQIH   +RT             ++  +   + I  RII  +
Sbjct: 242 SLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQS 301

Query: 79  SFADLDY------------------AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
             +DLD                   A ++F  +++P+   W  +I    ++      AI 
Sbjct: 302 GISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQN-GLNNDAIE 360

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           +F+ M+ +G   P+  T    L A + + + + GKQ HA   + G      + N+L   Y
Sbjct: 361 VFKTMVSEGP-RPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMY 419

Query: 181 ASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTF 238
           A  G ++ A KVF+ + + R  VSW  MI A  Q G  + A++LF +M  L  +PD  T+
Sbjct: 420 AKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITY 479

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
             + SAC     +  G     + L    H +   +     ++D++ + G L  A +  E+
Sbjct: 480 VGVLSACTHGGLVEQG--RSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVEN 537

Query: 299 MP-KRDLTSWNSIILGFALHGRAEAALKYFDR-LVVEESFSPNSITFVGVLSAC 350
           MP + D+ +W S++    ++   + A    +R L++E + S        V S+C
Sbjct: 538 MPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSC 591



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 68/362 (18%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M V  VQ G       +  +F    +EG   N  +L + L+   S++ L   KQIHA A+
Sbjct: 345 MIVGYVQNGL---NNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAI 401

Query: 58  RT--ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI-ENPNSFTWNTLIRACARSVDA 114
           R+  AL       L       +A    ++ A +VF  + +N ++ +W ++I A A+    
Sbjct: 402 RSGEALSPSVGNAL----TTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH-GL 456

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
             +AI LF++M+  G + PD  T+   L AC +     QG+                   
Sbjct: 457 GEEAIELFEQMLTLG-IKPDHITYVGVLSACTHGGLVEQGRS------------------ 497

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
                     + DL   V  + ++ +L  +  M+D F + G    A K    M +  EPD
Sbjct: 498 ----------YFDLMKNV--HKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPM--EPD 543

Query: 235 GYTFQSITSACAGLATLSLG-MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
              + S+ S+C     + L  + A   +L   ++S     L N     +Y  CG  D A 
Sbjct: 544 VIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALAN-----VYSSCGKWDDAA 598

Query: 294 QVFESMPKRDLT-----SWNSI-----ILGF--ALHGRAEAALKYFDRL---VVEESFSP 338
           ++ + M  R +      SW  I     + G    LH + +   K  D++   + +  F+P
Sbjct: 599 KIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAP 658

Query: 339 NS 340
           ++
Sbjct: 659 DT 660



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 36/179 (20%)

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L   V + N+L+++Y K G    A  +F  MP +   SWN+I+ G+A  G+ E A + FD
Sbjct: 6   LTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFD 65

Query: 329 RLVVEESFS------------------------------PNSITFVGVLSACNHRGMVSE 358
            + V +S S                              P   T   VL++C   G    
Sbjct: 66  LIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGI 125

Query: 359 GRDY--FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           G+    F V +  +   PV      L+++ A+ G++  A  +   M ++ +   W +++
Sbjct: 126 GKKVHSFVVKLGLHACVPVAN---SLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMI 180


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/629 (34%), Positives = 342/629 (54%), Gaps = 53/629 (8%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           R+E    N  +++  ++ C  +  L+   +++A    + +  +   L++ + +  +    
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGI--EVNDLMVSALVDMYMKCN 285

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            +D A R+F +    N    N +     R    + +A+ +F  M++ G V PD+ +   A
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR-EALGVFNLMMDSG-VRPDRISMLSA 343

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           + +C+ L     GK  H ++ + G  S   I N+LI  Y  C   D A ++FD M  +++
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQ-----------------ILFE------------ 232
           V+WN ++  +V+ GE D+A + F  M                   LFE            
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 233 ----PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                DG T  SI SAC  L  L L  W + YI ++    +  DV +  +L+DM+ +CG 
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN---GIQLDVRLGTTLVDMFSRCGD 520

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
            + A  +F S+  RD+++W + I   A+ G AE A++ FD ++ E+   P+ + FVG L+
Sbjct: 521 PESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMI-EQGLKPDGVAFVGALT 579

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC+H G+V +G++ F  M+  + ++P   HYGC+VDLL RAG ++EA+ L+ +MPM+P+ 
Sbjct: 580 ACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND 639

Query: 409 VIWRSLLDACCKKHASVVLSEEVAK--QVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           VIW SLL A C+   +V ++   A+  QV+  E    +G YVLLS VYASA RWND+  V
Sbjct: 640 VIWNSLL-AACRVQGNVEMAAYAAEKIQVLAPER---TGSYVLLSNVYASAGRWNDMAKV 695

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R  M +KG+ K PG SSI+I G  HEF +GD SHP+   I   LD + ++    G+ PD 
Sbjct: 696 RLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDL 755

Query: 527 SQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
           S   M VDE +  K   L  HSE+LA+A G+++   G  IR+ KNLRVC DCH   K  S
Sbjct: 756 SNVLMDVDEKE--KIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFAS 813

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +++N EII+RD  RFH+ + G CSC D+W
Sbjct: 814 KVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 193/386 (50%), Gaps = 20/386 (5%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENP 96
           SSL  CK++ +LK  H    +  L     T+  + +R     +   L +A  VF   E+ 
Sbjct: 37  SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESY 96

Query: 97  NS-FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            + F +N+LIR  A S     +AI+LF RM+  G + PDK+TFPF L ACA   A   G 
Sbjct: 97  GTCFMYNSLIRGYASS-GLCNEAILLFLRMMNSG-ISPDKYTFPFGLSACAKSRAKGNGI 154

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H  I K G   D+++ NSL+HFYA CG LD A KVFD M ER++VSW  MI  + +  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 216 EFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
               A+ LF RM    E  P+  T   + SACA L  L  G   +A+I        V D+
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE--VNDL 272

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           +V ++L+DMY KC ++D+A+++F+     +L   N++   +   G    AL  F+ L+++
Sbjct: 273 MV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN-LMMD 330

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARA 389
               P+ I+ +  +S+C+    +  G+       + Y +    E +      L+D+  + 
Sbjct: 331 SGVRPDRISMLSAISSCSQLRNILWGKS-----CHGYVLRNGFESWDNICNALIDMYMKC 385

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLL 415
              D A  +   M  K   V W S++
Sbjct: 386 HRQDTAFRIFDRMSNKT-VVTWNSIV 410


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/621 (36%), Positives = 332/621 (53%), Gaps = 62/621 (9%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           + ++  SSLT C  +  L   KQ+HA+ +R+ LPQ      + S +I  +A       A 
Sbjct: 269 DSTTYTSSLTACARLFSLGWGKQLHAKVIRS-LPQIDP--YVASALIELYAKCGSFKEAK 325

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           RVF  +++ NS +W  LI   +   +   +++ LF +M  +   + D+      +  C  
Sbjct: 326 RVFNSLQDRNSVSWTVLIGG-SLQYECFSKSVELFNQMRAELMAI-DQFALATLISGCFN 383

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW--- 204
                 G+Q H+   K G    + ++NSLI  YA CG L  A  VF +M ER +VSW   
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 205 ----------------------------NVMIDAFVQFGEFDSALKLFRRM--QILFEPD 234
                                       N M+ A++Q G  +  LK++  M  Q    PD
Sbjct: 444 ITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHC-DHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
             T+ ++   CA +    LG      I+ H     L+ +V V N+ I MY KCG +  A+
Sbjct: 504 WVTYVTLFRGCADIGANKLG----DQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQ 559

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F+ +  +D+ SWN++I G++ HG  + A K FD ++  +   P+ I++V VLS C+H 
Sbjct: 560 KLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDML-SKGAKPDYISYVAVLSGCSHS 618

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V EG+ YFD+M   + I+P LEH+ C+VDLL RAG++ EA  L+  MPMKP A +W +
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL AC K H +  L+E  AK V E +    SG Y+LL+++Y+ A + +D   VRKLM DK
Sbjct: 679 LLSAC-KIHGNDELAELAAKHVFELDSPD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 736

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
           G+ K PG S +E++   H F A D SHPQ   I   +D + EK+   GY    S  + + 
Sbjct: 737 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIH 796

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
                       HSE+LA+A GI++L   MPI + KNLR+C DCH V KLIS + + E +
Sbjct: 797 ------------HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFV 844

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           +RD  RFHHFK GSCSC DYW
Sbjct: 845 IRDGVRFHHFKSGSCSCGDYW 865



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 11/304 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S +  +A    +D+A   F  +   +  +WN +I A ++S   + +A+ L   M  +G V
Sbjct: 209 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVR-EALGLVVEMHRKG-V 266

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             D  T+  +L ACA LF+   GKQ HA + +     D Y+ ++LI  YA CG    A +
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           VF+++ +R+ VSW V+I   +Q+  F  +++LF +M+  L   D +   ++ S C     
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H+  L+   +     ++V+NSLI +Y KCG L  A  VF SM +RD+ SW S+
Sbjct: 387 LCLGRQLHSLCLKSGHNRA---IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I  ++  G    A ++FD +        N+IT+  +L A    G   +G   +  M+++ 
Sbjct: 444 ITAYSQIGNIIKAREFFDGMATR-----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 371 NITP 374
           ++TP
Sbjct: 499 DVTP 502



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 182/421 (43%), Gaps = 52/421 (12%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
            ++LL +   C ++S  +++    ++      H  ++       +A    L  A  +F +
Sbjct: 42  QNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMN-----GYAKQGSLSDAEELFDR 96

Query: 93  IENPNSFTWNTLIRA---CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           +   +  +WNTL+       R +D     +  F  M   G+ LP+  TF   +K+C  L 
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDG----LETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF---------------- 193
                 Q     +K     D  +  +L+  +  CG++D A+++F                
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLA 212

Query: 194 ---------------DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYT 237
                          ++M ER +VSWN+MI A  Q G    AL L   M +     D  T
Sbjct: 213 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 272

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
           + S  +ACA L +L  G   HA ++R        D  V ++LI++Y KCGS   A++VF 
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQ---IDPYVASALIELYAKCGSFKEAKRVFN 329

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
           S+  R+  SW  +I G   +     +++ F+++   E  + +      ++S C +R  + 
Sbjct: 330 SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLC 388

Query: 358 EGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            GR    + +   +N   V+ +   L+ L A+ G++  A  + S+M  + D V W S++ 
Sbjct: 389 LGRQLHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQNAEFVFSSMSER-DIVSWTSMIT 445

Query: 417 A 417
           A
Sbjct: 446 A 446



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 135/345 (39%), Gaps = 81/345 (23%)

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK--------- 191
           AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L  A +         
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 192 -----------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                                  +FD M  R + SWN ++  + Q   F   L+ F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 229 ILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
              +  P+ +TF  +  +C  L    L   A   +          D  V  +L+DM+ +C
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCREL---APQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 287 GSLDIARQV-------------------------------FESMPKRDLTSWNSIILGFA 315
           G +D A ++                               FE M +RD+ SWN +I   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 316 LHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
             GR   AL     LVVE   +    +S T+   L+AC     +  G+     +I     
Sbjct: 247 QSGRVREALG----LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL-- 300

Query: 373 TPVLEHY--GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            P ++ Y    L++L A+ G+  EA  + +++  + ++V W  L+
Sbjct: 301 -PQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLI 343


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 320/607 (52%), Gaps = 78/607 (12%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +++  +   A  +F +    N   +N +IR+   + +   +A+ +FQ M+      PD +
Sbjct: 81  YSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN-NLYVEALSIFQVMLSCA-FNPDHY 138

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN----------------------- 173
           TFP  LKAC+ L     G Q H  I K GL ++++I                        
Sbjct: 139 TFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQM 198

Query: 174 --------NSLIHFYASCGHLDLA------------------------------------ 189
                   NS++  YA  G  D A                                    
Sbjct: 199 PYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQY 258

Query: 190 -NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
            + +F+ M +++L+SWNVMI  +V     + A+ LF +M+    +PD  T  S+  AC  
Sbjct: 259 IHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGD 318

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L+ L LG   H YI +    +L  ++L+ N+L+DMY KCG L+ AR VF+ M  RD+ SW
Sbjct: 319 LSALFLGRRLHKYIEKG---NLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSW 375

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            S++  +   G+   A+  F +++ +   +P+SI FV VLSAC+H G++ +GR YF +M 
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKML-DSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMT 434

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
            +Y I P +EH+ C+VDL  RAG ++EA   +  MPM+P+  +W +LL AC + H+ + +
Sbjct: 435 EQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC-RVHSKMDI 493

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
              VA  ++       SG YVLLS +YA A  W DV  VR  M   G+ K PG S++E++
Sbjct: 494 GL-VAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELN 552

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
           G  H F AGD  HPQ K IYG LD++  K+K  GY P    A    E++D K+  L +HS
Sbjct: 553 GQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVED-KECHLAIHS 611

Query: 548 ERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
           E+LAI   ILN K G PIR+ KNLRVC DCH   KLIS+I +  IIVRD  RFHHF +G 
Sbjct: 612 EKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGI 671

Query: 608 CSCMDYW 614
           CSC DYW
Sbjct: 672 CSCGDYW 678



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 15/249 (6%)

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPD 234
           L+  Y++ G   +A  +FD  LE+++V +NVMI ++V    +  AL +F+ M    F PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            YTF  +  AC+GL  L +G+  H  I++     L T++ + N+L+ MY KCG L  AR+
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVK---VGLDTNLFIGNALVAMYGKCGCLREARK 193

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354
           V + MP RD+ SWNS++ G+A  G+ + AL+     + +E  S N     G +++ +   
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALE-----ICKEMDSLNLNHDAGTMASLSPVV 248

Query: 355 MVS--EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAV 409
             +  E   Y   M  E      L  +  ++ +       +EA+ L   M    MKPDAV
Sbjct: 249 CYTSLENVQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAV 307

Query: 410 IWRSLLDAC 418
              SLL AC
Sbjct: 308 TIASLLPAC 316


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/544 (38%), Positives = 308/544 (56%), Gaps = 16/544 (2%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     L+   +VF  + + +  TWN++I    +       A+ +F  M + G V PD  
Sbjct: 215 YGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVA-SAVEMFCGMRDSG-VSPDVL 272

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T      A A       G+  H ++ +RG  V D+   N+++  YA    ++ A ++FD+
Sbjct: 273 TLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDS 332

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSL 253
           M  R  VSWN +I  ++Q G    A+ ++  MQ     +P   TF S+  A + L  L  
Sbjct: 333 MPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQ 392

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   HA  ++     L  DV V   +ID+Y KCG LD A  +FE  P+R    WN++I G
Sbjct: 393 GTRMHALSIKT---GLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISG 449

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
             +HG    AL  F ++  +E  SP+ +TFV +L+AC+H G+V +GR++F++M   Y I 
Sbjct: 450 VGVHGHGAKALSLFSQMQ-QEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIK 508

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P+ +HY C+VD+  RAG +D+A   + NMP+KPD+ IW +LL AC + H +V + +  ++
Sbjct: 509 PIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGAC-RIHGNVEMGKVASQ 567

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
            + E +     G YVL+S +YA   +W+ V  VR L+  + + K PG SSIE+    + F
Sbjct: 568 NLFELDPKNV-GYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVF 626

Query: 494 FAGDTS--HPQTKQIY-GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           ++G+    HPQ ++I    LDL+  K++S GY PDYS   + D  +D K+  L  HSERL
Sbjct: 627 YSGNQMNIHPQHEEIQRELLDLL-AKIRSLGYVPDYS-FVLQDVEEDEKEQILNNHSERL 684

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA GI+N  P  P+ ++KNLRVC DCH  TK IS+I   EIIVRD  RFHHFKDG CSC
Sbjct: 685 AIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSC 744

Query: 611 MDYW 614
            D+W
Sbjct: 745 GDFW 748



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 179/357 (50%), Gaps = 9/357 (2%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           Q+HA ALR  L +          ++H +  F  +  A+R F ++ + +   WN ++    
Sbjct: 89  QLHACALRLGLLRGDA--FASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLC 146

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           R+  A  +A+ LF RM+ +G V  D  T    L  C  L   +     H +  K GL  +
Sbjct: 147 RNARAA-EAVGLFGRMVMEG-VAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDE 204

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ- 228
           +++ N++I  Y   G L+   KVFD M  R LV+WN +I    Q G+  SA+++F  M+ 
Sbjct: 205 LFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRD 264

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
               PD  T  S+ SA A    +  G   H Y++R      V D++  N+++DMY K   
Sbjct: 265 SGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWD--VGDIIAGNAIVDMYAKLSK 322

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           ++ A+++F+SMP RD  SWN++I G+  +G A  A+  +D +   E   P   TFV VL 
Sbjct: 323 IEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLP 382

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           A +H G + +G     + I +  +   +    C++DL A+ G +DEA+ L    P +
Sbjct: 383 AYSHLGALQQGTRMHALSI-KTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRR 438


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/575 (35%), Positives = 303/575 (52%), Gaps = 55/575 (9%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            D+  A   F +I+      WN +I    +S     +A  LF+RM+ +  + PD+ TF  
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQS-GMCAEAFELFRRMVSK-RIPPDEFTFTS 301

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSD------VYINNSLIHFYASCGHLDLANKVFD 194
            L ACA    F  GK  H    +  L  D      + +NN+L+  Y+  G + +A K+FD
Sbjct: 302 LLSACANAGFFLHGKSVHGQFIR--LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFD 359

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI------------------------L 230
           +M  + +VSWN ++  +++ G  D+A ++F+ M                          L
Sbjct: 360 SMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKL 419

Query: 231 F--------EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           F        +P  YT+    +AC  L  L  G   HA++++ C           N+L+ M
Sbjct: 420 FNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQ-CGFEASNSA--GNALLTM 476

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y +CG++  AR VF  MP  D  SWN++I     HG    AL+ FD++V +  + P+ I+
Sbjct: 477 YARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIY-PDRIS 535

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           F+ +L+ACNH G+V +G  YF+ M  ++ I+P  +HY  L+DLL RAG I EA  L+  M
Sbjct: 536 FLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTM 595

Query: 403 PMKPDAVIWRSLLDAC---CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
           P +P   IW ++L  C            ++++ K V E +G      Y+LLS  Y++A R
Sbjct: 596 PFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDG-----TYILLSNTYSAAGR 650

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W D   VRKLM D+GV KEPGCS IE+    H F  GDT HP   ++Y FL+++  K++ 
Sbjct: 651 WVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRK 710

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            GY PD ++ A+ D     K+  L  HSERLA++ G+L L  G  + V KNL++C DCH 
Sbjct: 711 LGYVPD-TKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHT 769

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
               +SR    EI+VRD  RFHHFKDG CSC +YW
Sbjct: 770 AMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 159/385 (41%), Gaps = 72/385 (18%)

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL--FAFSQGKQAHA 159
           N +I A AR+  A P   V    +    ++ PD ++F   L A   +   A S   Q H 
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHC 185

Query: 160 HIFKRGLVSDVYINNSLIHFYASC---GHLDLANKVFDNMLERSLVS------------- 203
            + K G  + + ++N+LI  Y  C   G    A KV D M E+  ++             
Sbjct: 186 AVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGD 245

Query: 204 ------------------WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSA 244
                             WN MI  +VQ G    A +LFRRM      PD +TF S+ SA
Sbjct: 246 VHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSA 305

Query: 245 CAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           CA       G   H   +R   D      + VNN+L+ +Y K G + +A ++F+SM  +D
Sbjct: 306 CANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKD 365

Query: 304 LTSWNSIILGFA------------------------------LHGR-AEAALKYFDRLVV 332
           + SWN+I+ G+                               +HG  AE ALK F+++  
Sbjct: 366 VVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS 425

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           E+   P   T+ G ++AC   G +  G+     ++ +            L+ + AR G +
Sbjct: 426 ED-VKPCDYTYAGAVAACGELGALKHGKQLHAHLV-QCGFEASNSAGNALLTMYARCGAV 483

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDA 417
            +A  +   MP   D+V W +++ A
Sbjct: 484 KDARLVFLVMP-NVDSVSWNAMISA 507



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 129/303 (42%), Gaps = 51/303 (16%)

Query: 174 NSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
            SL+  YA  G L  +   FD++    R  V  N MI AF +      A+ +FR +    
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 231 --FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL--VNNSLIDMYCKC 286
               PD Y+F S+ SA   +  L++   +H   L    H L    +  V+N+LI +Y KC
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAV---SHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209

Query: 287 GSLDI---ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD--------------- 328
            +  +   AR+V + MP++D  +W +I++G    G   AA   F+               
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS 269

Query: 329 ---------------RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNI 372
                          R +V +   P+  TF  +LSAC + G    G+      I  + + 
Sbjct: 270 GYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDF 329

Query: 373 TP--VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL----DACCKKHASVV 426
            P   L     LV L +++G I  A  +  +M +K D V W ++L    ++ C  +A+ +
Sbjct: 330 VPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK-DVVSWNTILSGYIESGCLDNAARI 388

Query: 427 LSE 429
             E
Sbjct: 389 FKE 391


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 326/561 (58%), Gaps = 11/561 (1%)

Query: 56  ALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDA 114
           A R     + KT+++Y+ +I        ++ A  +F  + + +S TW T++    ++   
Sbjct: 200 ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN-GL 258

Query: 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
           + +A+ +F+RM  +G V  D++TF   L AC  L A  +GKQ HA+I +     +V++ +
Sbjct: 259 QLEALDVFRRMRAEG-VGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGS 317

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEP 233
           +L+  Y+ C  + LA  VF  M  R+++SW  MI  + Q    + A++ F  MQ+   +P
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP 377

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D +T  S+ S+CA LA+L  G   H   L      L+  + V+N+L+ +Y KCGS++ A 
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQFHCLALVS---GLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F+ M   D  SW +++ G+A  G+A+  +  F++++      P+ +TF+GVLSAC+  
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLAN-GLKPDGVTFIGVLSACSRA 493

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V +G DYFD M  ++ I P+ +HY C++DL +R+G   EA   +  MP  PDA  W +
Sbjct: 494 GLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL +C +   ++ + +  A+ ++E++       YVLL  ++A+  +W +V  +R+ M D+
Sbjct: 554 LLSSC-RLRGNMEIGKWAAENLLETDPQ-NPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
            V KEPGCS I+     H F A D SHP + +IY  L+ ++ K+   GY PD S + + D
Sbjct: 612 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVS-SVLHD 670

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             D  K   +  HSE+LAIA G++ +   MPIR+ KNLRVC DCH  TK IS+I   +I+
Sbjct: 671 VADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDIL 730

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           VRD  RFH F DG+CSC D+W
Sbjct: 731 VRDAVRFHKFSDGTCSCGDFW 751



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 206/490 (42%), Gaps = 75/490 (15%)

Query: 31  NNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF 87
           N ++++LSS       + ++    +H   L+T L Q   T L+   +  +A    L  A 
Sbjct: 10  NRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFL-QAPPTFLLNHLLTAYAKSGRLARAR 68

Query: 88  RVFYQIENPNSFTWNTLIRACARS------------------------------VDAKPQ 117
           RVF ++ +PN FT N L+ A A S                                +  +
Sbjct: 69  RVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           ++ L++ ++ + +V P + T    +   + L   + G   H  + + G  +  ++ + L+
Sbjct: 129 SVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLV 188

Query: 178 HFYASCGHLDLANKVFDN-------------------------------MLERSLVSWNV 206
             YA  G +  A +VF                                 M++R  ++W  
Sbjct: 189 DMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTT 248

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           M+    Q G    AL +FRRM+      D YTF SI +AC  LA L  G   HAYI R  
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW 308

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 +V V ++L+DMY KC S+ +A  VF  M  R++ SW ++I+G+  +  +E A++
Sbjct: 309 YED---NVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  + + +   P+  T   V+S+C +   + EG   F  +     +   +     LV L
Sbjct: 366 AFSEMQM-DGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTL 423

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGI 442
             + G+I++A  L   M    D V W +L+       K   ++ L E++    ++ +G  
Sbjct: 424 YGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVT 482

Query: 443 CSGVYVLLSR 452
             GV    SR
Sbjct: 483 FIGVLSACSR 492



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 16/350 (4%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M   + Q G    Q  +  +F   R EG   +  +  S LT C +++ L   KQIHA   
Sbjct: 249 MVTGLTQNGL---QLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305

Query: 58  RTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
           RT        + + S ++  ++    +  A  VF ++   N  +W  +I    ++     
Sbjct: 306 RT---WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNA-CSE 361

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+  F  M   G + PD  T    + +CA L +  +G Q H      GL+  + ++N+L
Sbjct: 362 EAVRAFSEMQMDG-IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNAL 420

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDG 235
           +  Y  CG ++ A+++FD M     VSW  ++  + QFG+    + LF +M     +PDG
Sbjct: 421 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            TF  + SAC+    +  G     +     DH +V        +ID+Y + G    A + 
Sbjct: 481 VTFIGVLSACSRAGLVEKG--CDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEF 538

Query: 296 FESMPKR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            + MP   D   W +++    L G  E      + L+  +  +P S   +
Sbjct: 539 IKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 336/588 (57%), Gaps = 23/588 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTA--LPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +S+L +    + +S  K I+   LR    L    K +LI      +A   D+  A  VF 
Sbjct: 311 TSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDV----YAKCGDMITARDVFN 366

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI---EQGNVLPDKHTFPFALKACAYL 148
            +E  ++ +WN++I    +S D   +A+ LF+ M+   EQ     D  T+   +     L
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLM-EAMKLFKMMMIMEEQA----DHITYLMLISLSTRL 421

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GK  H++  K G+  D+ ++N+LI  YA CG +  + K+F++M     V+WN +I
Sbjct: 422 ADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVI 481

Query: 209 DAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A V+FG+F + L++  +M+     PD  TF      CA LA   LG   H  +LR    
Sbjct: 482 SACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           S   ++ + N+LI+MY KCG L+ + +VFE M +RD+ +W  +I  + ++G  E AL+ F
Sbjct: 542 S---ELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESF 598

Query: 328 DRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
             + +E+S   P+S+ F+ ++ AC+H G+V +G   F+ M   Y I P++EHY C+VDLL
Sbjct: 599 --VDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLL 656

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
           +R+  I +A   +  MP++PDA IW S+L AC +    +  +E V++++IE       G 
Sbjct: 657 SRSQKISKAEEFIQAMPIEPDASIWASVLRAC-RTSGDMETAERVSRRIIELNPDD-PGY 714

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            +L S  YA+ R+W+ V L+RK + DK + K PG S IEI    H F +GD S PQ++ I
Sbjct: 715 SILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAI 774

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           +  L+++   +   GY PD  + +   E ++ K+  +  HSERLAIA G+LN +PG P++
Sbjct: 775 HKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQ 834

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           V KNLRVC DCHEVTKLIS+I   EI+VRD  RFH FKDG CSC D W
Sbjct: 835 VMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 39  SLTECKSMSQLKQIHAQALRTALPQQH----KTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +L+   ++++L++IHA  +   L        K +  YS   HF + A    +  VF ++ 
Sbjct: 13  ALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYS---HFRAPAS---SLSVFRRVS 66

Query: 95  -NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N + WN++IRA +++    P+A+  + ++ E   V PDK+TFP  +KACA LF    
Sbjct: 67  PAKNVYIWNSIIRAFSKN-GWFPKALEFYGKLRES-KVSPDKYTFPSVIKACAGLFDAEM 124

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G   +  I + G  SD+Y+ N+L+  Y+  G L  A +VFD M  R LVSWN +I  +  
Sbjct: 125 GDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSS 184

Query: 214 FGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G ++ AL+++  ++     PD +T  S+  A A L  +  G   H + L+   +S+   
Sbjct: 185 HGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSV--- 241

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            +VNN L+ MY K      AR+VF+ M  RD  ++N++I G+      E ++K F  L  
Sbjct: 242 SVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF--LEN 299

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLARAG 390
            + F P+ +T   VL AC H   +S  +  ++ M+       VLE      L+D+ A+ G
Sbjct: 300 LDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRA---GFVLESTVKNILIDVYAKCG 356

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
           ++  A  + ++M  K D V W S++  
Sbjct: 357 DMITARDVFNSMECK-DTVSWNSIISG 382



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 202/437 (46%), Gaps = 21/437 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           SS+L +      + Q + +H   L++ +     +++    +  +  F+    A RVF ++
Sbjct: 211 SSVLPAFANLLVVKQGQGLHGFTLKSGV--NSVSVVNNGLLAMYLKFSRPTDARRVFDEM 268

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +S T+NT+I    + ++   +++ +F   ++Q    PD  T    L AC +L   S 
Sbjct: 269 VVRDSVTYNTMICGYLK-LEMVEESVKMFLENLDQFK--PDILTVTSVLCACGHLRDLSL 325

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            K  + ++ + G V +  + N LI  YA CG +  A  VF++M  +  VSWN +I  ++Q
Sbjct: 326 AKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385

Query: 214 FGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G+   A+KLF+ M I+ E  D  T+  + S    LA L  G   H+  ++     +  D
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIK---SGIYID 442

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + V+N+LIDMY KCG +  + ++F SM   D  +WN++I      G     L+   ++  
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQM-R 501

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +    P+  TF+  L  C        G++    ++  +     L+    L+++ ++ G +
Sbjct: 502 KNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLL-RFGYESELQIGNALIEMYSKCGCL 560

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-GGICSGVYVLLS 451
           + +  +   M  + D V W  ++ A    +      E+  +  ++ E  GI     V ++
Sbjct: 561 ESSFRVFERMSRR-DVVTWTGMIYA----YGMYGEGEKALESFVDMEKSGIVPDSVVFIA 615

Query: 452 RVYASARRWNDVGLVRK 468
            +YA +      GLV K
Sbjct: 616 LIYACSHS----GLVEK 628


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 338/602 (56%), Gaps = 23/602 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F+ +R        S+  + +  C ++ QL   +Q+H+  L+      H T  + + +  
Sbjct: 289 LFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF---HLTGNVMTALAD 345

Query: 77  -FASFADLDYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
            ++   +L  A  +F       N  +W  +I  C ++ D  P A+VLF RM E   V+P+
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI-PLAVVLFSRMRED-RVMPN 403

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T+   LKA   +       Q HA + K       ++  +L+  Y+  G  + A  +F 
Sbjct: 404 EFTYSAMLKASLSILP----PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFK 459

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA-GLATLS 252
            + ++ +V+W+ M+    Q G+ + A  LF +M I   +P+ +T  S+  ACA   A + 
Sbjct: 460 MIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVD 519

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HA  +++  H  +    V+++L+ MY + G++D A+ VFE    RDL SWNS+I 
Sbjct: 520 QGRQFHAISIKYRYHDAIC---VSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMIS 576

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A HG +  A++ F R +       + +TF+ V+  C H G+V EG+ YFD M+ ++ I
Sbjct: 577 GYAQHGYSMKAIETF-RQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKI 635

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P +EHY C+VDL +RAG +DE + L+ +MP    A++WR+LL AC + H +V L +  A
Sbjct: 636 NPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGAC-RVHKNVELGKFSA 694

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            +++  E    S  YVLLS +YA+A +W +   VRKLM  + V KE GCS I+I    H 
Sbjct: 695 DKLLSLEPHD-SSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHS 753

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F A D SHP + QIY  L +I  +LK  GY+P+ S   + D  +D K++ L  HSERLA+
Sbjct: 754 FIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTS-FVLHDIAEDQKEAMLVAHSERLAL 812

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++   PG P+++ KNLRVC DCH V K++S I + EII+RD +RFHHF  G+CSC D
Sbjct: 813 AFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGD 872

Query: 613 YW 614
           +W
Sbjct: 873 FW 874



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 162/333 (48%), Gaps = 16/333 (4%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
              VF  +   N  TW +L+  CA +     + + LF RM  +G + P+  TF   L A 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHA-QMHSEVMALFFRMRAEG-IWPNPFTFASVLSAV 211

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A   G++ HA   K G  S V++ NSL++ YA CG ++ A  VF+ M  R +VSWN
Sbjct: 212 ASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 206 VMIDAFVQFGEFD-SALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
            ++ A +Q  E +  AL+LF   +  + +    T+ ++   CA L  L+L    H+ +L+
Sbjct: 272 TLM-AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE-SMPKRDLTSWNSIILGFALHGRAEA 322
           H  H L  +V+   +L D Y KCG L  A  +F  +   R++ SW +II G   +G    
Sbjct: 331 HGFH-LTGNVM--TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPL 387

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A+  F R+  E+   PN  T+  +L A      +   + +  V+   Y   P +     L
Sbjct: 388 AVVLFSRM-REDRVMPNEFTYSAMLKASLS---ILPPQIHAQVIKTNYQHIPFVGT--AL 441

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +   ++ G+ ++AL +   +  K D V W ++L
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQK-DVVAWSAML 473



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHL 186
           +G VL D  T    LKAC  +     G+Q H    K G    +V    SL+  Y  CG +
Sbjct: 92  RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSV 151

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
               +VF+ M ++++V+W  ++            + LF RM+     P+ +TF S+ SA 
Sbjct: 152 CEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAV 211

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A    L LG   HA  ++       + V V NSL++MY KCG ++ A+ VF  M  RD+ 
Sbjct: 212 ASQGALDLGQRVHAQSVK---FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMV 268

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD- 364
           SWN+++ G  L+     AL+ F            S T+  V+  C +   ++  R     
Sbjct: 269 SWNTLMAGLQLNECELEALQLFHESRATMGKMTQS-TYATVIKLCANLKQLALARQLHSC 327

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           V+ + +++T  +     L D  ++ G + +AL++ S      + V W +++  C
Sbjct: 328 VLKHGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/492 (40%), Positives = 290/492 (58%), Gaps = 12/492 (2%)

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           E   + P    +   L++C    A   GKQ HA +   G   D  I   L++ Y  C  L
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSAC 245
             A  +FD + + ++  WNV+I  +   G +++A++L+ +M      PD +TF  +  AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-- 303
           A L+ +  G   H ++++        DV V  +LIDMY KCG +  AR+VF+ +  RD  
Sbjct: 187 AALSAIEHGREIHEHVVQT---GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV 243

Query: 304 -LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            + SWN++I G+A+HG A  AL  F+ +       P+ ITFVGVLSAC+H G++ EG  +
Sbjct: 244 LVVSWNAMITGYAMHGHATEALDLFEEM--NRVAKPDHITFVGVLSACSHGGLLEEGWMF 301

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           F+ MI +Y I P ++HY C+VDLL  +G +DEA +L+  M + PD+ +W +LL++C K H
Sbjct: 302 FETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSC-KIH 360

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
           A+V L E   +++IE E    +G YV+LS +YA A +W  V  +RKLMTD+ + K   CS
Sbjct: 361 ANVELGEIALERLIELEPDD-AGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACS 419

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
            IE+    H F +GDTSHP + +IY  L+ +   +K  GY+P  + +   D  DD K + 
Sbjct: 420 WIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPS-TGSVFHDVEDDEKANM 478

Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           +  HSERLAIA G+++  PG  + + KNLR+C+DCH   K IS+I   EI VRD  R+HH
Sbjct: 479 VCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHH 538

Query: 603 FKDGSCSCMDYW 614
           FKDG CSC DYW
Sbjct: 539 FKDGVCSCGDYW 550



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 12/308 (3%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAF 87
           +++N++SLL S    K++   KQ+HAQ             +I +++++     D L  A 
Sbjct: 74  TYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFD---TVIATKLVNLYCVCDSLSSAR 130

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            +F +I   N F WN LIR  A +      A+ L+ +M + G ++PD  TFPF LKACA 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWN-GPYEAAVQLYYQMFDYG-LVPDNFTFPFVLKACAA 188

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSW 204
           L A   G++ H H+ + G   DV++  +LI  YA CG +  A +VFD +L R    +VSW
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSW 248

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           N MI  +   G    AL LF  M  + +PD  TF  + SAC+    L  G      ++R 
Sbjct: 249 NAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIR- 307

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAA 323
            D+ +   V     ++D+    G LD A  +   M    D   W +++    +H   E  
Sbjct: 308 -DYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELG 366

Query: 324 LKYFDRLV 331
               +RL+
Sbjct: 367 EIALERLI 374


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 308/545 (56%), Gaps = 18/545 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     L  A  VF+     N F+W  ++ A A +      A+ L + M  +G + P+  
Sbjct: 102 YGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHN-GHYMDALNLLEIMDLEG-ISPNSI 159

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L A A L    +G+  H  I   G ++D+++ N LI+ YA C  L  A  VF+++
Sbjct: 160 TFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESL 219

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGM 255
             RS+++W  ++ A+   G F  ALK+F  M +   EP   TF ++   CA +A   +G 
Sbjct: 220 TSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGR 279

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H  I    D     +V V N+LI+MY KC S D AR+VF++M ++D+ +WNS+I  + 
Sbjct: 280 EVHGVI----DARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYG 335

Query: 316 LHGRAEAALKYFDRLVVEES------FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
            +G    AL+ + R+  +ES       + + ITF+GVL AC+H G+V +    +  MI +
Sbjct: 336 QNGYGFQALEIYKRM--QESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGD 393

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           Y   P     GCL+DLL RAG +DEA   +++MP  PD  IW  LL AC   HA V  + 
Sbjct: 394 YGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACIT-HADVERAA 452

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A +++       SG YV LS +YA A RW+D+  +RKLM  +GV K  G SSIEI G+
Sbjct: 453 RAADRIMALRPTD-SGSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGV 511

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            HEF AGDTSHP+ ++IY  L  I+  ++ RGY PD  +A + +   + K+     HSER
Sbjct: 512 LHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDI-KAVLHNAAREAKEKMCCFHSER 570

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LAIA G+++   G  +R+ KNLRVC DCH  TK+IS+    +IIVRD  RFH F++GSCS
Sbjct: 571 LAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCS 630

Query: 610 CMDYW 614
           C DYW
Sbjct: 631 CEDYW 635



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 140/295 (47%), Gaps = 12/295 (4%)

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
           +++E  +V P      + L+ C    A ++GK+ H HI   G  S  Y+ N L+  Y  C
Sbjct: 46  QLLEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKC 105

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           G L  A  VF     R++ SW +M+ AF   G +  AL L   M +    P+  TF  + 
Sbjct: 106 GSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELL 165

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
            A A L+ L  G   H  I   C    + D+ V N LI+MY KC SL  A  VFES+  R
Sbjct: 166 GAVAALSWLDRGRALHRRI--AC-CGFLADIFVANCLINMYAKCRSLADACSVFESLTSR 222

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
            + +W +++  +AL+G    ALK F  L+  +   P  +TFV V+  C    +   GR+ 
Sbjct: 223 SVIAWTALVAAYALNGFFRDALKVF-LLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREV 281

Query: 363 FDVM--INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             V+   +E N+         L+++  +  + DEA  +   M  K D + W S++
Sbjct: 282 HGVIDARSEANVCV----GNALINMYGKCASPDEARKVFDAMQRK-DIITWNSMI 331


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 329/618 (53%), Gaps = 41/618 (6%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYS---- 72
           +F      G + +H +L + L  C + +      Q+H   ++      ++ L I S    
Sbjct: 166 VFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIK------YRALSITSIGNS 219

Query: 73  --RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
             R+  +A    L+ A R F  + + N  TW T+I ACA   +     + LF  M+  G 
Sbjct: 220 LCRM--YAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDG- 276

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           VLP++ T    +  C      + GKQ  A  FK G  +++ + NS ++ Y   G  D A 
Sbjct: 277 VLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAM 336

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDS-----------ALKLFRRMQ-ILFEPDGYTF 238
           + F+ M + S+++WN MI  + Q  E              ALK+FR ++    +PD +TF
Sbjct: 337 RFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTF 396

Query: 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
            SI S C+ +  L  G   HA  ++      ++DV+VN++L++MY KCG ++ A + F  
Sbjct: 397 SSILSVCSSMMALEQGEQIHAQTIKT---GFLSDVVVNSALVNMYNKCGCIEDATKAFVE 453

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           M  R L +W S+I G++ HGR + A++ F+ +       PN ITFV VLSAC++ G+  +
Sbjct: 454 MSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFA-GVRPNEITFVCVLSACSYAGLAEK 512

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
              YFD+M  EY I P+++HYGC+VD+  R G +D+A   +     +P+  IW SL+ A 
Sbjct: 513 AEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLV-AG 571

Query: 419 CKKHASVVLSEEVAKQVIE-SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
           C+ H ++ L+   A ++IE    GI    YVLL  +Y S  RW+DV  VRKLM  +G+  
Sbjct: 572 CRSHGNMELAFYAADRLIELRPKGI--ETYVLLLNMYISNERWHDVARVRKLMKQEGLGV 629

Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
               S I I    + F A D +H  + ++Y  L+ + EK K+ GY P Y  A + D  DD
Sbjct: 630 LMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTIGYEP-YQSAELSDSEDD 688

Query: 538 GK--QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVR 595
            K    S+R HSERLA+ALG+L   PG  +RV KN+ +C+DCH   K  S + N EI+VR
Sbjct: 689 KKPPAGSVRHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKFFSLLANREIVVR 748

Query: 596 DRARFHHFKDGSCSCMDY 613
           D  R H FKDG CSC D+
Sbjct: 749 DSKRLHKFKDGRCSCGDF 766



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 12/282 (4%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M+ +G  +      P  L  C    +    +  H H+ K G  +D+++  SL++ Y  CG
Sbjct: 69  MLREGKTVQSAMYVPL-LHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCG 127

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
               A  +FD M E+++V+W  +I  +    +   AL++F  M +    P  YT  ++ +
Sbjct: 128 ASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLN 187

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           AC+      LG   H Y +++   S+ +   + NSL  MY K GSL+ A + F  +P ++
Sbjct: 188 ACSASNNADLGSQVHGYTIKYRALSITS---IGNSLCRMYAKSGSLESAMRAFRMVPDKN 244

Query: 304 LTSWNSIILGFAL-HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           + +W ++I   A      E  L  F  ++++    PN  T   V+S C  R  ++ G+  
Sbjct: 245 VITWTTMISACAEDENYTELGLTLFLDMLMDGVL-PNEFTLTSVMSLCGTRLDLNLGKQV 303

Query: 363 --FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
             F   I      PV       + L  R G  DEA+     M
Sbjct: 304 QAFCFKIGCQTNIPV---KNSTMYLYLRKGETDEAMRFFEEM 342


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 312/565 (55%), Gaps = 10/565 (1%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           QIHA ALR         +   +  ++F +   L  A R+F ++ N N   WN ++     
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKT-GCLGLARRLFEEMPNRNVIAWNAVMTNAV- 191

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
            +D +P         + +   +P+  +      ACA     S G+Q H  +   G   DV
Sbjct: 192 -IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDV 250

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-I 229
            ++N+++ FY  C     A  VFD M  R+ VSW  MI A+ Q G  + AL ++   +  
Sbjct: 251 SVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNT 310

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             EP  +   S+ + CAGL  L+ G   HA  +R C   +  ++ V ++L+DMY KCG +
Sbjct: 311 GEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSC---IDANIFVASALVDMYGKCGGV 367

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + A QVF  MP+R+L +WN++I G+A  G A+ AL  FD ++     SPN IT V V++A
Sbjct: 368 EDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITA 427

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C+  G+  +G + FD M   + + P  EHY C+VDLL RAG  + A  ++  MPM+P   
Sbjct: 428 CSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSIS 487

Query: 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
           +W +LL A CK H    L    ++++ E +    SG +VLLS + ASA RW +   VRK 
Sbjct: 488 VWGALLGA-CKMHGKTELGRIASEKLFELDPQD-SGNHVLLSNMLASAGRWAEATDVRKE 545

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529
           M + G+ KEPGCS I    + H F+A DT H +  +I   L  + +++++ GY PD +Q 
Sbjct: 546 MKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPD-TQY 604

Query: 530 AMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
           ++ D  ++ K++ +  HSE+LA+A G++++ P +PIR+ KNLR+C DCH   K +S I  
Sbjct: 605 SLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVG 664

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            EIIVRD  RFH+FK   CSC DYW
Sbjct: 665 REIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 157/328 (47%), Gaps = 18/328 (5%)

Query: 95  NPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALK--ACAYLFAF 151
           NP   ++   I   A+   A+P  A+  F  M+  G + P+  TFP A K  ACA     
Sbjct: 73  NPTVVSFTAFISGAAQ--HARPLAALSAFAAMLRVG-LRPNDFTFPSAFKAAACAPPRCS 129

Query: 152 SQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN-VMID 209
           + G Q HA   + G L  D +++ + +  Y   G L LA ++F+ M  R++++WN VM +
Sbjct: 130 TVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTN 189

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           A +     ++    F   +    P+  +  +  +ACAG   LSLG   H +++  C   +
Sbjct: 190 AVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVT-CGFDM 248

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF-- 327
             DV V+N+++D Y KC     AR VF+ M  R+  SW S+I+ +A HG  E AL  +  
Sbjct: 249 --DVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMG 306

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            R   EE   P       VL+ C     ++ GR    V +    I   +     LVD+  
Sbjct: 307 ARNTGEE---PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSC-IDANIFVASALVDMYG 362

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G +++A  +  +MP + + V W +++
Sbjct: 363 KCGGVEDAEQVFLDMPER-NLVTWNAMI 389


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/510 (39%), Positives = 298/510 (58%), Gaps = 45/510 (8%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L  C ++ +LK+IHA  ++ +L Q   + L+   +      A+ +YA  +F ++ +PN+F
Sbjct: 21  LKNCPNIVELKKIHAHIVKFSLSQS--SFLVTKMVDVCNHHAETEYANLLFKRVADPNAF 78

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGN----VLPDKHTFPFALKACAYLFAFSQGK 155
            +N +IRA   +      AI ++++M+   +    + PDK TFPF +K+CA L  +  GK
Sbjct: 79  LYNAMIRAYKHN-KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H H+FK G  S+  + NSL+  Y  C  LD A+KVF+ M ER  VSWN +I   V+ G
Sbjct: 138 QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLG 197

Query: 216 E-------------------------------FDSALKLFRRMQIL-FEPDGYTFQSITS 243
           +                               +  AL+ FRRMQ++  EPD  +  S+  
Sbjct: 198 QMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLP 257

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L LG W H Y  +      + ++ V N+LI+MY KCGS+D  R++F+ M +RD
Sbjct: 258 ACAQLGALELGKWIHFYADKA---GFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERD 314

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SW+++I+G A HGRA  A++ F  +  +    PN ITFVG+LSAC H G+++EG  YF
Sbjct: 315 VISWSTMIVGLANHGRAHEAIELFQEMQ-KAKIEPNIITFVGLLSACAHAGLLNEGLRYF 373

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M  +YNI P +EHYGCLV+LL  +G +D+AL L+  MPMKPD+ IW SLL + C+ H+
Sbjct: 374 ESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSS-CRSHS 432

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           ++ ++    + ++E E    +G YVLLS +YA   +W+ V  +RKLM  K + K PGCSS
Sbjct: 433 NLEIAVIAMEHLLELEPAD-TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSS 491

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           IE+D +  EF +GD S P +K IY  L L+
Sbjct: 492 IEVDNMVQEFASGDDSKPFSKAIYRVLKLL 521


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/584 (34%), Positives = 330/584 (56%), Gaps = 15/584 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           + + +++  + K++   +++HA    +         L  S I  +     +  A +VF +
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGD--AFLDNSLIHLYCKCGSVLEARKVFDE 111

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  +W +LI   A++ D   +AI L   M+ +G   P+  TF   LKA        
Sbjct: 112 MRRKDMVSWTSLIAGYAQN-DMPEEAIGLLPGML-KGRFKPNGFTFASLLKAAGAHADSG 169

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            G+Q HA   K     DVY+ ++L+  YA CG +D+A  VFD +  ++ VSWN +I  F 
Sbjct: 170 IGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           + G+ ++AL  F  M +  FE   +T+ S+ S+ A L  L  G W HA++++        
Sbjct: 230 RKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQK---M 286

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
                N+L+DMY K GS+  AR+VF+ +  +DL +WN+++  FA +G  + A+ +F+ + 
Sbjct: 287 TAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMR 346

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            +     N +TF+ +L+AC+H G+V EG+ YF+ M+ EY++ P ++H+  +V LL RAG 
Sbjct: 347 -KSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHFVTVVALLGRAGL 404

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           ++ AL  +  MP++P A +W +LL A C+ H +  + +  A  V E +    SG  VLL 
Sbjct: 405 LNFALVFIFKMPIEPTAAVWGALL-AACRMHKNAKVGQFAADHVFELDPDD-SGPPVLLY 462

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            +YAS  +W+    VR++M   GV KEP CS +E++   H F A D +HP+ ++IY    
Sbjct: 463 NIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWG 522

Query: 512 LIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
            I +K++  GY PD     + VD  D  ++++L+ HSE+LA+A  ++ +  G  IR+ KN
Sbjct: 523 QISKKIRKEGYVPDMDYVLLRVD--DQEREANLQYHSEKLALAFALIEMPAGATIRIMKN 580

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +R+C DCH   K IS++F  EI+VRD  RFHHF +GSCSC DYW
Sbjct: 581 IRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 7/294 (2%)

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           +++ G + P    +   + ACA        ++ HAH+       D +++NSLIH Y  CG
Sbjct: 41  LLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCG 100

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            +  A KVFD M  + +VSW  +I  + Q    + A+ L   M +  F+P+G+TF S+  
Sbjct: 101 SVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           A    A   +G   HA  ++ CD     DV V ++L+DMY +CG +D+A  VF+ +  ++
Sbjct: 161 AAGAHADSGIGRQIHALAVK-CDWH--EDVYVGSALLDMYARCGMMDMATAVFDKLDSKN 217

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             SWN++I GFA  G  E AL  F  + +   F     T+  V S+    G + +G+   
Sbjct: 218 GVSWNALISGFARKGDGETALMTFAEM-LRNGFEATHFTYSSVFSSIARLGALEQGKWVH 276

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             MI              L+D+ A++G++ +A  +   +  K D V W ++L A
Sbjct: 277 AHMIKSRQKMTAFAG-NTLLDMYAKSGSMIDARKVFDRVDDK-DLVTWNTMLTA 328


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/597 (35%), Positives = 320/597 (53%), Gaps = 46/597 (7%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           A+ L   +P++++  +  + I  +    DL  A  +   +       WN +I        
Sbjct: 211 ARKLFDEMPKRNE-FIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH-G 268

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL------- 166
               A+ LF++M   G V  D+ T+   + ACA    F  GKQ HA+I K  L       
Sbjct: 269 LFEDALTLFRKMRLLG-VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFL 327

Query: 167 ----------------------------VSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
                                       V D+   N+L+  Y + G ++ A   F  M E
Sbjct: 328 LSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWA 257
           ++L++W VMI    Q G  + ALKLF +M++  +EP+ Y F    +AC+ L  L  G   
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQL 447

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HA I+ H  H   + + V N++I MY +CG ++ AR +F +MP  D  SWNS+I     H
Sbjct: 448 HAQIV-HLGHD--STLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQH 504

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           G    A++ +++++ +E   P+  TF+ VLSAC+H G+V EG  YF+ M+  Y I P  +
Sbjct: 505 GHGVKAIELYEQML-KEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGED 563

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
           HY  ++DL  RAG   +A +++ +MP +  A IW +LL A C+ H ++ L  E A+++ +
Sbjct: 564 HYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALL-AGCRTHGNMDLGIEAAEKLFK 622

Query: 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD 497
                  G YVLLS +YAS  RWNDV   RKLM D+GV KEP CS  E++   H F   D
Sbjct: 623 LIPQ-HDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDD 681

Query: 498 TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL 557
           T HP+   IY +L+ ++ ++K  GY PD ++  + D   + K+ +L  HSE+LA+A G++
Sbjct: 682 TVHPEVLSIYNYLEKLNLEMKKIGYIPD-TKYVLHDMESEHKEYALSTHSEKLAVAFGLM 740

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            L  G  +RVFKNLR+C DCH   K +S++   EI+VRD  RFHHFK+G CSC +YW
Sbjct: 741 KLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 135/308 (43%), Gaps = 76/308 (24%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           DV    +LI  Y++ G+L +A ++F+   +  R  V +N MI  +    +  SA++LFR 
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV--------LVNN 277
           M+   F+PD +TF S+ SA    +TL        Y  R C     T V         V N
Sbjct: 138 MRWANFQPDDFTFASVLSA----STLIF------YDERQCGQMHGTVVKFGIEIFPAVLN 187

Query: 278 SLIDMYCKCGS---------LDIARQVFESMPKR----------------DLT------- 305
           +L+ +Y KC S         +  AR++F+ MPKR                DLT       
Sbjct: 188 ALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILD 247

Query: 306 --------SWNSIILGFALHGRAEAALKYFDRL-----VVEESFSPNSITFVGVLSACNH 352
                   +WN++I G+  HG  E AL  F ++      V+ES      T+  V+SAC  
Sbjct: 248 TMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDES------TYTSVISACAD 301

Query: 353 RGMVSEGRD-YFDVMINEYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
            G    G+  +  ++ NE N     +L     L+ L  + G +D A  +   MP+K D +
Sbjct: 302 GGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DII 360

Query: 410 IWRSLLDA 417
            W +LL  
Sbjct: 361 TWNTLLSG 368


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 304/534 (56%), Gaps = 55/534 (10%)

Query: 102 NTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK----Q 156
           N LIRA A S  A+P  A+ L+  ++  G+  P  HT P  LK+ A   A    +     
Sbjct: 175 NALIRALAGS--ARPHLALPLYAHLLRAGH-HPTPHTLPSLLKSLALSPAVPGARGLALA 231

Query: 157 AHAHIFKRGLVSDVYINNSLIHF--------------------------------YASCG 184
            HAH  K GL   + ++N+LI                                  YA  G
Sbjct: 232 VHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAG 291

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITS 243
            +  A  +FD M  R+ VSW+ M++ +VQ G+   AL LF RMQ     PD      + +
Sbjct: 292 RVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLA 351

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L  G W H Y+  +   ++   V +  +L+DMY KCG + +A +VF+ M +++
Sbjct: 352 ACAQLGVLEQGKWVHGYLKAN---NIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408

Query: 304 LTSWNSIILGFALHGRAEAALKYF---DRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + +W ++I G A+HGR   AL+ F   +RL V+    P+ I F+G L AC H G+V +GR
Sbjct: 409 VLAWTTMIKGLAMHGRGSEALELFSQMERLGVK----PDDIAFIGALCACTHTGLVDKGR 464

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           + FD M+ +Y I P +EHYGC+VDLLAR G ++EA  +V  MPMKPDA+IW +L+ A C+
Sbjct: 465 ELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALM-AGCR 523

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H +V L+E V K  IE E    SG YVLL  +YA++ R      +R LM +KGV K PG
Sbjct: 524 FHKNVELAEYVVKHWIELEPD-KSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPG 582

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK-SRGYTPDYSQAAMVDELDDGK 539
           CS++EI G+ H+F  GD SHP  ++I    D ID +++   GY PD  +  ++D  ++ K
Sbjct: 583 CSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKE-VLLDIEEEEK 641

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
           +++L  HSE++AIA  ++N    MPIR+ KNLRVC DCH VTKLIS++F++ ++
Sbjct: 642 ENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 131/334 (39%), Gaps = 47/334 (14%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ-------IHAQALRTALPQQHKTLLIY 71
            +F   + +G   + + L+  L  C  +  L+Q       + A  +R  +       L  
Sbjct: 329 GLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITV------FLGT 382

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           + +  +A   ++  A  VF  ++  N   W T+I+  A       +A+ LF +M E+  V
Sbjct: 383 ALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGS-EALELFSQM-ERLGV 440

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
            PD   F  AL AC +     +G++   + + K G+   +     ++   A  G L+ A 
Sbjct: 441 KPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAR 500

Query: 191 KVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA 249
           ++ + M ++   + W  ++ A  +F +     +   +  I  EPD    +S      G  
Sbjct: 501 EMVEKMPMKPDALIWGALM-AGCRFHKNVELAEYVVKHWIELEPD----KSGAYVLLGNI 555

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
             + G  A A  +RH         L+    +D    C +++I   + +            
Sbjct: 556 YAASGRHASAREIRH---------LMREKGVDKTPGCSTVEIKGVIHQ------------ 594

Query: 310 IILGFALHGRAEAALKYFD----RLVVEESFSPN 339
            I+G   H   E  L  +D    R+ +EE + P+
Sbjct: 595 FIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPD 628


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 303/526 (57%), Gaps = 25/526 (4%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P++F  N+++R     V + P   + F R +       +  T    LK      A +  +
Sbjct: 88  PSTFQCNSILR-----VLSDPSDALRFLRRMRALGRRGNAFTLAILLKP---RCALAHAR 139

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HA++   G + D  +  SL+  YA+ G  D A K+F  M  R  V+WNV+I    +  
Sbjct: 140 QLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNR 199

Query: 216 EFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLV 270
               ALKLF  M+      EPD  T   +  AC  L  L  G  +WA+A      +H   
Sbjct: 200 RTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAE-----EHGYG 254

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             + V NSLI MY +CG +D A +VF   P++ + +W+++I G A +G  + A+  F+ +
Sbjct: 255 AKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEM 314

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +     +P+  TF GVLSAC+H G+V EG  +FD+M  EY + P + HYGC+VDL+ RAG
Sbjct: 315 I-RSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAG 373

Query: 391 NIDEALHLVSN-MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
            +DEA  LV+N M + PDA IWR+LL AC + H  V L E V   +IE +    +G YVL
Sbjct: 374 LLDEAYELVTNEMKVAPDATIWRTLLGAC-RIHGHVDLGERVISNLIELKAQQ-AGDYVL 431

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L   YA+   W+ V  VRKLM +KG+   PGC+++E +G  +EF A D +HP+  +IY  
Sbjct: 432 LLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEK 491

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           L+ I+++L+  GY P+ S  + + +LD +GK+S+L  HSE+LAIA  +L      PIR+ 
Sbjct: 492 LNEINKQLRIAGYVPNVS--SELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLA 549

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLRVC DCH  TK+ S I+N  +IVRDR RFHHF+ G CSC DYW
Sbjct: 550 KNLRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/606 (37%), Positives = 320/606 (52%), Gaps = 49/606 (8%)

Query: 45  SMSQLKQIHAQALRTALPQQ--HKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWN 102
           S   L++ HA+ ++  L Q      LL+ +    +A    L     +F +    +   ++
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSA----YAKSRLLPDTRLLFDETPRRDLHLYS 73

Query: 103 TLIRACARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           +L+ A + S    P+ ++ L +RM+    + PD         A A L +   GKQ H H 
Sbjct: 74  SLLAAVSHS--ESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHF 131

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
                 SD  + +SLI  Y  CG  D A KVFD+++ ++ V W  +I  +V  G  D AL
Sbjct: 132 VASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEAL 191

Query: 222 KLFRRM--QILFE-------------------------------PDGYTFQSITSACAGL 248
           +LFR M  + LF                                 D +   S     A L
Sbjct: 192 ELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADL 251

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
           A   LG   H+  +R       + ++V N+++DMY KC  +  AR+VFE +  RD+ SW 
Sbjct: 252 AAHVLGRQLHSLTMRL---GFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWT 308

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           ++++G A HGRAE A   +DR+V+     PN +TFVG++ AC+H G+V +GR  FD M  
Sbjct: 309 TMLVGEAQHGRAEEAFSLYDRMVLA-GVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKG 367

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
           EY I P L+HY C +DLL+R+G++ EA  L++ MP  PD   W SLL AC KK+ +  +S
Sbjct: 368 EYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSAC-KKYNNAEMS 426

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
             VA  ++E      S  YVLLS VYA   +W+ V  VRKLM D  + KEPG S IE+  
Sbjct: 427 IRVADNLLELRPKYPS-TYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGR 485

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
               F AG+      ++I GFL+ +  +++ RGY PD S + M D  +  K+  L LHSE
Sbjct: 486 EFRLFHAGEVPIDLREEILGFLEELVSEMRQRGYVPDTS-SVMHDLEEHEKEHHLCLHSE 544

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           RLA+A GIL    G  IRV KNLRVC DCH V K IS IF  +IIVRD +RFHHF+ G C
Sbjct: 545 RLAVAFGILRSPLGSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKC 604

Query: 609 SCMDYW 614
           SC ++W
Sbjct: 605 SCSEFW 610


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/612 (36%), Positives = 320/612 (52%), Gaps = 83/612 (13%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +AS  D+  A +VF +I   N    N +IR+   +     + + +F  M    NV PD +
Sbjct: 84  YASLKDVASARKVFDEIPERNVIIINVMIRSYVNN-GFYGEGVKVFGTMC-GCNVRPDHY 141

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVS---------------------------- 168
           TFP  LKAC+       G++ H    K GL S                            
Sbjct: 142 TFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201

Query: 169 ---DVYINNSLIHFYASCGHLDLANKV--------------------------------- 192
              DV   NSL+  YA     D A +V                                 
Sbjct: 202 SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMY 261

Query: 193 ----FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAG 247
               F  M ++SLVSWNVMI  +++      A++L+ RM+   FEPD  +  S+  AC  
Sbjct: 262 VKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGD 321

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
            + LSLG   H YI R     L+ ++L+ N+LIDMY KCG L+ AR VFE+M  RD+ SW
Sbjct: 322 TSALSLGKKIHGYIERK---KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSW 378

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            ++I  +   GR   A+  F +L  +    P+SI FV  L+AC+H G++ EGR  F +M 
Sbjct: 379 TAMISAYGFSGRGCDAVALFSKLQ-DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
           + Y ITP LEH  C+VDLL RAG + EA   + +M M+P+  +W +LL AC + H+   +
Sbjct: 438 DHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC-RVHSDTDI 496

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
               A ++ +      SG YVLLS +YA A RW +V  +R +M  KG+ K PG S++E++
Sbjct: 497 GLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
            I H F  GD SHPQ+ +IY  LD++ +K+K  GY PD S++A+ D  ++ K++ L +HS
Sbjct: 556 RIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPD-SESALHDVEEEDKETHLAVHS 614

Query: 548 ERLAIALGILNLK-----PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           E+LAI   ++N K         IR+ KNLR+C DCH   KLIS+I + EII+RD  RFH 
Sbjct: 615 EKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHV 674

Query: 603 FKDGSCSCMDYW 614
           F+ G CSC DYW
Sbjct: 675 FRFGVCSCGDYW 686



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 11/268 (4%)

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H+ I    L  +  +   L+  YAS   +  A KVFD + ER+++  NVMI ++V  
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G +   +K+F  M      PD YTF  +  AC+   T+ +G   H    +     L + +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK---VGLSSTL 175

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N L+ MY KCG L  AR V + M +RD+ SWNS+++G+A + R + AL+   R +  
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC-REMES 234

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
              S ++ T   +L A ++    +E   Y   M  +      L  +  ++ +  +     
Sbjct: 235 VKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPV 291

Query: 394 EALHLVSNMP---MKPDAVIWRSLLDAC 418
           EA+ L S M     +PDAV   S+L AC
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPAC 319



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 22/297 (7%)

Query: 39  SLTECKSMSQLKQIH-AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPN 97
           +L  C+ M  +K  H A  + + LP    T           +  ++ Y   +F+++   +
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNT-----------TTENVMYVKDMFFKMGKKS 273

Query: 98  SFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
             +WN +I    +  +A P +A+ L+ RM E     PD  +    L AC    A S GK+
Sbjct: 274 LVSWNVMIGVYMK--NAMPVEAVELYSRM-EADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H +I ++ L+ ++ + N+LI  YA CG L+ A  VF+NM  R +VSW  MI A+   G 
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              A+ LF ++Q     PD   F +  +AC+    L  G      +    DH  +T  L 
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM---TDHYKITPRLE 447

Query: 276 NNS-LIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           + + ++D+  + G +  A +  + M  + +   W +++    +H   +  L   D+L
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504


>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
          Length = 625

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/582 (36%), Positives = 332/582 (57%), Gaps = 25/582 (4%)

Query: 45  SMSQLKQIHAQALRTAL---PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTW 101
           S+ +++++HA+ ++  L   P+  + LL    +  +     ++ A  +F  +  P +F +
Sbjct: 57  SLDEVRKVHARHIKLGLDRCPRYARPLLAACAVSGWP--GGMELAASIFESLVEPEAFDY 114

Query: 102 NTLIRA--CARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
           NTL+R        D  P A + L+   +E G V PD +TFPF LKACA L A  +G+Q  
Sbjct: 115 NTLMRGHVSGGGGDRDPAAALRLYIDGLEAG-VSPDSYTFPFVLKACAQLAALQEGRQLQ 173

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGE 216
           AHI K G   D ++ NSLI FY  CG   +A   FD +   ER+ VSW+ ++ A+ + G 
Sbjct: 174 AHIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEAEERTTVSWSALLAAYTKAGL 233

Query: 217 FDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           +   L  F  M +  + PD  +  S  SACA L +   G   H  +LR+   +   + ++
Sbjct: 234 WGECLASFGSMMLDGWRPDESSMVSALSACAHLGSFDAGRSVHCALLRN---TARLNTIM 290

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
             SL+DMY KCGS++ A   F++M  +   ++++++ G ALHG    AL+ FD +V  E 
Sbjct: 291 LTSLLDMYAKCGSIEKAAAAFDAMDDKSAWAYSAMLSGLALHGDGRKALQVFDAMV-REG 349

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            +P++  +VGVL+AC+  G++ +G   FD M  E+ + P   HYGC+VDL+ARAG +D+A
Sbjct: 350 HAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKVAPNALHYGCMVDLMARAGRLDDA 409

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             L+  MP  P    WRSLL+A C+ H  + L+   A Q +   G   +G YV+++ ++A
Sbjct: 410 RALIGTMPTGPTDTAWRSLLNA-CRIHGDLDLAWH-ALQELRRLGAANAGDYVIVADMHA 467

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
            A+ W     +R    D G+ +  G S++E+ G  H F + D +HP+T+ IY  L  ++ 
Sbjct: 468 RAKNWTAAAALRTEAVDSGLAQSLGFSAVEVRGELHRFVSQDMAHPRTRDIYEMLHQMEW 527

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRL---HSERLAIALGILNLKPGMPIRVFKNLR 572
           +L+  GY PD S+ A    LD G++   R+   HS++LA+A G+L+   G P+RV  NLR
Sbjct: 528 QLRFDGYKPDTSEVA----LDAGEEEKGRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLR 583

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + K+CH  + LIS IF  +I++RDR R H F+ G+CSC DYW
Sbjct: 584 MSKECHAYSALISEIFGRDIVIRDRNRLHRFRCGTCSCRDYW 625


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/609 (34%), Positives = 330/609 (54%), Gaps = 29/609 (4%)

Query: 17  SHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK-QIHAQALRTALPQQHKTLLIYSRII 75
           S  +F +   +G   + +++ + L     M ++K  +  Q L   L       ++   I 
Sbjct: 188 SVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLIS 247

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN----- 130
            F+   D+D A  +F  I  P+  ++N LI   + + + +  A+  F+ ++  G      
Sbjct: 248 VFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETEC-AVKYFRELLVSGQRVSSS 306

Query: 131 ----VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
               ++P    F     AC       QG        K G +    ++ +L   Y+    +
Sbjct: 307 TMVGLIPVSSPFGHLHLACCI-----QG-----FCVKSGTILQPSVSTALTTIYSRLNEI 356

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
           DLA ++FD   E+++ +WN MI  + Q G  + A+ LF+ M    F P+  T  SI SAC
Sbjct: 357 DLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC 416

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  LS G   H  I      +L  ++ V+ +LIDMY KCG++  A Q+F+   +++  
Sbjct: 417 AQLGALSFGKSVHQLIK---SKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTV 473

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           +WN++I G+ LHG  + ALK F+ ++    F P+S+TF+ VL AC+H G+V EG + F  
Sbjct: 474 TWNTMIFGYGLHGYGDEALKLFNEML-HLGFQPSSVTFLSVLYACSHAGLVREGDEIFHA 532

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M+N+Y I P+ EHY C+VD+L RAG +++AL  +  MP++P   +W +LL AC   H   
Sbjct: 533 MVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGAC-MIHKDT 591

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L+   ++++ E + G   G YVLLS +Y+  R +     VR+ +  + ++K PGC+ IE
Sbjct: 592 NLARVASERLFELDPGNV-GYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIE 650

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
           ++G  H F  GD SH QT  IY  L+ +  K++  GY  + +  A+ D  ++ K+    +
Sbjct: 651 VNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSE-TVTALHDVEEEEKELMFNV 709

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LAIA G++  +PG  IR+ KNLRVC DCH  TK IS+I    I+VRD  RFHHFKD
Sbjct: 710 HSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKD 769

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 770 GICSCGDYW 778



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 12/317 (3%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           + ++LL+ +++  +   L + HAQ +R     QH    +              +A  +F+
Sbjct: 7   SRNTLLALISKACTFPHLAETHAQLIRNGY--QHDLATVTKLTQKLFDVGATRHARALFF 64

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +  P+ F +N LI+  + S DA   +I  +  +++   + PD  T+ FA+ A       
Sbjct: 65  SVPKPDIFLFNVLIKGFSFSPDA--SSISFYTHLLKNTTLSPDNFTYAFAISASP---DD 119

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           + G   HAH    G  S++++ ++L+  Y     +  A KVFD M +R  V WN MI   
Sbjct: 120 NLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGL 179

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           V+   +D ++++F+ M       D  T  ++  A A +  + +GM      L+   H   
Sbjct: 180 VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH--- 236

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            D  V   LI ++ KC  +D AR +F  + K DL S+N++I GF+ +G  E A+KYF  L
Sbjct: 237 FDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL 296

Query: 331 VVEESFSPNSITFVGVL 347
           +V      +S T VG++
Sbjct: 297 LVSGQRVSSS-TMVGLI 312


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 334/602 (55%), Gaps = 22/602 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           F   R  G      +  S++  C S+  +   KQ+H  AL+  +  +   L + S +   
Sbjct: 94  FCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE---LFVGSNLEDM 150

Query: 78  ASFADLDY-AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            S     + A +VF ++   +  +W  +I   ++ +    +A++ F++MI++  V  D+H
Sbjct: 151 YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK-IGEFEEALLAFKKMIDE-EVTIDQH 208

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                L AC  L A   G+  H+ + K G  SD+++ N+L   Y+  G ++ A+ VF   
Sbjct: 209 VLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGID 268

Query: 197 LE-RSLVSWNVMIDAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLS 252
            E R++VS+  +ID +V+  + +  L +F   RR  I  EP+ +TF S+  ACA  A L 
Sbjct: 269 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI--EPNEFTFSSLIKACANQAALE 326

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HA +++    +   D  V++ L+DMY KCG L+ A Q F+ +      +WNS++ 
Sbjct: 327 QGTQLHAQVMKI---NFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVS 383

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            F  HG  + A+K F+R+V +    PN+ITF+ +L+ C+H G+V EG DYF  M   Y +
Sbjct: 384 VFGQHGLGKDAIKIFERMV-DRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 442

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P  EHY C++DLL RAG + EA   ++ MP +P+A  W S L AC + H    + +  A
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC-RIHGDKEMGKLAA 501

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           +++++ E    SG  VLLS +YA+ R+W DV  VR  M D  V K PG S +++    H 
Sbjct: 502 EKLVKLEPKN-SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 560

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F A D SHP+   IY  LD + +++K+ GY P  + +  +D  D  K+  L  HSER+A+
Sbjct: 561 FGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP-RTDSVPLDMDDSMKEKLLHRHSERIAV 619

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A  ++++  G PI V KNLRVC DCH   K IS++   +IIVRD +RFHHF DGSCSC D
Sbjct: 620 AFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGD 679

Query: 613 YW 614
           YW
Sbjct: 680 YW 681



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 183/388 (47%), Gaps = 14/388 (3%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           N  + ++ +  + K + + KQ+HA  L         T L    +  ++   +LD+A ++F
Sbjct: 6   NALAHVIQTYAKTKRLRRGKQLHA--LLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +   N  +W  +I   +++     +AI  F  M   G V P +  F  A++ACA L +
Sbjct: 64  DTMPQRNLVSWTAMISGLSQN-SKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGS 121

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GKQ H    K G+ S++++ ++L   Y+ CG +  A KVF+ M  +  VSW  MID 
Sbjct: 122 IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 181

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + + GEF+ AL  F++M       D +   S   AC  L     G   H+ +++      
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK---LGF 238

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFD 328
            +D+ V N+L DMY K G ++ A  VF    + R++ S+  +I G+    + E  L  F 
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLA 387
            L   +   PN  TF  ++ AC ++  + +G   +  VM   ++  P +     LVD+  
Sbjct: 299 EL-RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYG 355

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G +++A+     +   P  + W SL+
Sbjct: 356 KCGLLEQAIQAFDEIG-DPTEIAWNSLV 382



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 37/327 (11%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +L D +     ++  A      +GKQ HA +   G     ++ N L++ Y+ CG LD A 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLA 249
           K+FD M +R+LVSW  MI    Q  +F  A++ F  M+I  E P  + F S   ACA L 
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           ++ +G   H   L+     + +++ V ++L DMY KCG++  A +VFE MP +D  SW +
Sbjct: 121 SIEMGKQMHCLALK---FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTA 177

Query: 310 IILGFALHGRAEAALKYFDRLVVEE-----SFSPNSITFVGVLSACN-----HRGMVSEG 359
           +I G++  G  E AL  F +++ EE         +++   G L AC      H  +V  G
Sbjct: 178 MIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG 237

Query: 360 --RDYF--DVMINEYNITPVLE----------------HYGCLVDLLARAGNIDEALHLV 399
              D F  + + + Y+    +E                 Y CL+D       I++ L + 
Sbjct: 238 FESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVF 297

Query: 400 SNM---PMKPDAVIWRSLLDACCKKHA 423
             +    ++P+   + SL+ AC  + A
Sbjct: 298 VELRRQGIEPNEFTFSSLIKACANQAA 324


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/535 (39%), Positives = 294/535 (54%), Gaps = 46/535 (8%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR----GLVSDVYI 172
           +A+ +F++M   G +  D+ T+   L ACA    F  GKQ HA+I +      L   + +
Sbjct: 274 EALEMFRKMYLLG-IQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSV 332

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA------------ 220
           NN+L   Y  CG +D A +VF+ M  + LVSWN ++  +V  G  D A            
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL 392

Query: 221 -------------------LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
                              LKLF RM+   FEP  Y F     ACA LA L  G   HA 
Sbjct: 393 LTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQ 452

Query: 261 ILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           ++R   D SL       N+LI MY KCG ++ A  +F +MP  D  SWN++I     HG 
Sbjct: 453 LVRLGFDSSLSA----GNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGH 508

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL+ F+ L+++E   P+ ITF+ VLS C+H G+V EG  YF  M   Y I P  +HY
Sbjct: 509 GAQALELFE-LMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHY 567

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
             ++DLL RAG   EA  ++  MP++P   IW +LL A C+ H ++ L  + A+++ E  
Sbjct: 568 ARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALL-AGCRIHGNMDLGIQAAERLFELM 626

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
                G YVLLS +YA+  RW+DV  VRKLM DKGV KEPGCS IE++   H F   D  
Sbjct: 627 PQ-HDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIV 685

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP+ + +Y +L+ +  K++  GY PD ++  + D   + K+  L  HSE+LA+  G+L L
Sbjct: 686 HPEVQAVYNYLEELGLKMRKLGYIPD-TKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKL 744

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G  +RVFKNLR+C DCH   K +S++   EI+VRD  RFHHFK+G CSC +YW
Sbjct: 745 PLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 164/395 (41%), Gaps = 79/395 (20%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA-FSQGK 155
           ++  +N +I   + + D    AI LF+ ++  G   PD  TF   L A A +     Q +
Sbjct: 113 DTVCYNAMITGYSHNNDGF-GAIELFRDLLRNG-FRPDNFTFTSVLGALALIVEDEKQCQ 170

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASC-------------------------------- 183
           Q H  + K G      + N+L+  +  C                                
Sbjct: 171 QIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTT 230

Query: 184 --------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
                   G LD A +  D M E+ +V+WN MI  +V  G F  AL++FR+M +L  + D
Sbjct: 231 MIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWD 290

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
            +T+ S+ SACA       G   HAYILR     SL   + VNN+L  +Y KCG +D AR
Sbjct: 291 EFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEAR 350

Query: 294 QVFESMPKRDLTSWNSIILGFALHGR-------------------------------AEA 322
           QVF  MP +DL SWN+I+ G+   GR                                E 
Sbjct: 351 QVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEE 410

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           +LK F+R+   E F P    F G + AC     +  GR     ++        L     L
Sbjct: 411 SLKLFNRM-KSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLV-RLGFDSSLSAGNAL 468

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + + A+ G ++ A  L   MP   D+V W +++ A
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAA 502



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 125/303 (41%), Gaps = 48/303 (15%)

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF--DNMLERSLVSWNVMIDAFVQFGEF 217
           H+F      D+    +LI  ++S G+ +LA ++F    +  R  V +N MI  +    + 
Sbjct: 71  HLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDG 130

Query: 218 DSALKLFRRM-QILFEPDGYTFQSITSACA---------------------GLATLSLGM 255
             A++LFR + +  F PD +TF S+  A A                     G  T  L  
Sbjct: 131 FGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNA 190

Query: 256 WAHAYI-----------------LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298
               ++                  +  D     D L   ++I  Y + G LD ARQ  + 
Sbjct: 191 LLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDG 250

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           M ++ + +WN++I G+  HG    AL+ F ++ +      +  T+  VLSAC + G    
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYL-LGIQWDEFTYTSVLSACANAGFFLH 309

Query: 359 GRDYFDVMINEYNITPVLEHY----GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           G+     ++      P L+        L  L  + G +DEA  + + MP+K D V W ++
Sbjct: 310 GKQVHAYILRT-EPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAI 367

Query: 415 LDA 417
           L  
Sbjct: 368 LSG 370


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/535 (38%), Positives = 307/535 (57%), Gaps = 10/535 (1%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  A ++F ++   N  TWN ++ A   ++    +++  F  M  +G + PD+     
Sbjct: 183 GDLGGARKLFDEMPERNVATWNAMV-AGLTNLGFDEESLGFFLDMRREG-MHPDEFGLGS 240

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
             + CA L     G+Q HA++ + GL  D+ + +SL H Y  CG L     V   +   S
Sbjct: 241 VFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLS 300

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +VS N +I    Q G+ + AL+ F  M+ +    D  TF S  S+C+ LA L+ G   H 
Sbjct: 301 IVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHG 360

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
            +++     +V    V   L+ MY +CG L  + +VF      D    +++I  +  HG 
Sbjct: 361 QVMKAGVDKVVP---VMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGH 417

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            + A++ F +++      P+ +TF+ +L AC+H G+  EG D F++M   Y + P ++HY
Sbjct: 418 GQKAIELFKQMM-NGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 476

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL R+G +DEA  L+ +MP+ PD VIW++LL AC K   +  ++E +AK+VIE +
Sbjct: 477 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC-KTQKNFDMAERIAKRVIELD 535

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               S  YVLLS + A++RRW DV  VRK M D  V KEPG S +E+ G  H+F  GD S
Sbjct: 536 PHD-SASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDES 594

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP+ K+I   L+ +  K++  GY+PD S   + D  D+ K+ SL  HSE+LAIA   L+L
Sbjct: 595 HPRQKEIDECLEEMMAKIRQCGYSPDMSMV-LHDMEDEEKEVSLSHHSEKLAIAFAFLSL 653

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G+PIRV KNLRVC DCH   KL+S++   EI+VRD +RFHHFKDG CSC DYW
Sbjct: 654 PEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 40/290 (13%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F    +AC  L      +Q HA     G  +D +  N L+  YA  G L  A ++F+ + 
Sbjct: 109 FSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 165

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRM----------------QILFE--------- 232
            R+++SWN++   +++ G+   A KLF  M                 + F+         
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 225

Query: 233 -------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                  PD +   S+   CAGL  +  G   HAY++R     L  D+ V +SL  MY +
Sbjct: 226 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVR---SGLDRDMCVGSSLAHMYMR 282

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG L     V   +P   + S N+II G   +G +E AL+YF  ++     + + +TFV 
Sbjct: 283 CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVS 341

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            +S+C+    +++G+      + +  +  V+    CLV + +R G + ++
Sbjct: 342 AISSCSDLAALAQGQQIHG-QVMKAGVDKVVPVMTCLVHMYSRCGCLGDS 390



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 17/165 (10%)

Query: 209 DAFVQF---GEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           D FV+    G    AL+  FR   +L+      F  +  AC  L  L      HA+    
Sbjct: 78  DEFVRLCATGRLRDALRRPFR--GVLWSDAARLFSHLFRACRALRPLR---QLHAFA--- 129

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                 TD    N L+  Y   G L  AR++FE +P+R++ SWN +  G+  +G    A 
Sbjct: 130 ATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGAR 189

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           K FD     E    N  T+  +++   + G   E   +F  M  E
Sbjct: 190 KLFD-----EMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE 229


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/533 (36%), Positives = 304/533 (57%), Gaps = 60/533 (11%)

Query: 98  SFTWNTLIRACARSVDAKPQ---AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           SF WN +IRA   +V + PQ    I ++ RM     V PD HTFPF L +         G
Sbjct: 24  SFLWNIIIRAIVHNVSS-PQRHSPISVYLRM-RNHRVSPDFHTFPFLLPSFHNPLHLPLG 81

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHL---------------------------- 186
           ++ HA I   GL  D ++  SL++ Y+SCG L                            
Sbjct: 82  QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA 141

Query: 187 ---DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI------LFEPDGYT 237
              D A K+FD M ER+++SW+ +I+ +V  G++  AL LFR MQ+         P+ +T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
             ++ SAC  L  L  G W HAYI ++    +  D+++  +LIDMY KCGSL+ A++VF 
Sbjct: 202 MSTVLSACGRLGALEQGKWVHAYIDKY---HVEIDIVLGTALIDMYAKCGSLERAKRVFN 258

Query: 298 SM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           ++  K+D+ +++++I   A++G  +   + F  +   ++ +PNS+TFVG+L AC HRG++
Sbjct: 259 ALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLI 318

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
           +EG+ YF +MI E+ ITP ++HYGC+VDL  R+G I EA   +++MPM+PD +IW SLL 
Sbjct: 319 NEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
              +    +   E   K++IE +  + SG YVLLS VYA   RW +           G+ 
Sbjct: 379 G-SRMLGDIKTCEGALKRLIELD-PMNSGAYVLLSNVYAKTGRWME-----------GIN 425

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PGCS +E++G+ HEF  GD S  ++++IY  LD I ++L+  GY  D ++  ++D  +
Sbjct: 426 KVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTD-TKEVLLDLNE 484

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
             K+ +L  HSE+LAIA  ++  +PG P+R+ KNLR+C DCH     ++ IF 
Sbjct: 485 KDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLTGLALAEIFG 537



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 17/330 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +SLL+  + C  +   +++   +    LP  +  +  Y++         +D A ++F ++
Sbjct: 101 TSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA------GLIDDARKLFDEM 154

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRM----IEQGNVLPDKHTFPFALKACAYLF 149
              N  +W+ LI         K +A+ LF+ M      +  V P++ T    L AC  L 
Sbjct: 155 PERNVISWSCLINGYVMCGKYK-EALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMI 208
           A  QGK  HA+I K  +  D+ +  +LI  YA CG L+ A +VF+ +  ++ + +++ MI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273

Query: 209 DAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
                +G  D   +LF  M       P+  TF  I  AC     ++ G      ++   +
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIE--E 331

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALK 325
             +   +     ++D+Y + G +  A     SMP + D+  W S++ G  + G  +    
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGM 355
              RL+  +  +  +   +  + A   R M
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWM 421


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 331/604 (54%), Gaps = 49/604 (8%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           ++K++H  A R  +      + + + +IH +     ++ A RVF  +   +  +W +L  
Sbjct: 182 RVKEVHDDATRCGV---MSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL-S 237

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           +C        + + +F+ M   G V P+  T    L ACA L     GK+ H    + G+
Sbjct: 238 SCYVKCGFPRKGMDVFREMGWSG-VKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 296

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS------- 219
           V ++++ ++L+  YA C  +  A  VFD M  R +VSWN ++ A+ +  E++        
Sbjct: 297 VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLK 356

Query: 220 ----------------------------ALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
                                       A+++FR+MQ + F+P+  T  SI  AC+    
Sbjct: 357 MSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN 416

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L +G   H Y+ RH     V D+    +L+ MY KCG L+++R VF+ M ++D+ +WN++
Sbjct: 417 LRMGKEIHCYVFRHWK---VGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTM 473

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+  A+HG  + AL  FD++++     PNS+TF GVLS C+H  +V EG   F+ M  ++
Sbjct: 474 IIANAMHGNGKEALFLFDKMLLSR-VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDH 532

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            + P   HY C+VD+ +RAG ++EA   +  MPM+P A  W +LL A C+ + +V L++ 
Sbjct: 533 LVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALL-AACRVYKNVELAKI 591

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            AK++ E E     G YV L  +  +A+ W++   VR LM ++G+TK PGCS +++    
Sbjct: 592 SAKKLFEIEPN-NPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKV 650

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F  GD S+ ++ +IY FLD + EK+K  GY PD +   + D   + K  SL  HSE+L
Sbjct: 651 HTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPD-TDYVLQDIDQEEKAESLCNHSEKL 709

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A GILNL     IRVFKNLR+C DCH   K +S++  V I+VRD  RFHHFK+G+CSC
Sbjct: 710 AVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSC 769

Query: 611 MDYW 614
            D W
Sbjct: 770 KDLW 773



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 187/382 (48%), Gaps = 45/382 (11%)

Query: 73  RIIHFA-SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           R+I  A +  D + A ++F  I  P+  T +TLI A   +     +AI ++  + E+G +
Sbjct: 103 RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALT-THGLSNEAIKIYSSLQERG-I 160

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD   F  A KACA      + K+ H    + G++SDV++ N+LIH Y  C  ++ A +
Sbjct: 161 KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARR 220

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           VFD+++ R +VSW  +   +V+ G     + +FR M     +P+  T  SI  ACA L  
Sbjct: 221 VFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKD 280

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   H + +R   H +V ++ V ++L+ +Y KC S+  AR VF+ MP RD+ SWN +
Sbjct: 281 LKSGKEIHGFAVR---HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGV 337

Query: 311 IL----------GFAL-------------------------HGRAEAALKYFDRLVVEES 335
           +           GF+L                         +GR+E A++ F R + +  
Sbjct: 338 LTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF-RKMQKMG 396

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           F PN IT   +L AC+    +  G++    +   + +   L     L+ + A+ G+++ +
Sbjct: 397 FKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGD-LTSTTALLYMYAKCGDLNLS 455

Query: 396 LHLVSNMPMKPDAVIWRSLLDA 417
            + V +M  + D V W +++ A
Sbjct: 456 RN-VFDMMRRKDVVAWNTMIIA 476



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALR--TALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           SS+L + +  +++   K+IH    R          T L+Y     +A   DL+ +  VF 
Sbjct: 405 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLY----MYAKCGDLNLSRNVFD 460

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +   +   WNT+I A A   + K +A+ LF +M+    V P+  TF   L  C++    
Sbjct: 461 MMRRKDVVAWNTMIIANAMHGNGK-EALFLFDKML-LSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 152 SQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMID 209
            +G Q    + +  LV  D    + ++  Y+  G L+ A K    M +E +  +W  ++ 
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 210 AFVQFGEFD----SALKLF 224
           A   +   +    SA KLF
Sbjct: 579 ACRVYKNVELAKISAKKLF 597


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/510 (38%), Positives = 291/510 (57%), Gaps = 48/510 (9%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKT----LLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L  C +M +L QIH Q L+    +   T    L+ Y+RI       +L Y   VF  I +
Sbjct: 17  LERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARI----ELVNLAYTRVVFDSISS 72

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN+  WNT++RA + S D  P+A +L    +   +V  + +TFPF LKAC+ L AF + +
Sbjct: 73  PNTVIWNTMLRAYSNSND--PEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQ 130

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q HAHI KRG   +VY  NSL+  YA  G++  A+ +F+ +  R +VSWN+MID +++FG
Sbjct: 131 QIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFG 190

Query: 216 EFDSALKLFRRM-----------------------------QIL---FEPDGYTFQSITS 243
             D A K+F+ M                             Q+L    +PD  T     S
Sbjct: 191 NLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLS 250

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACAGL  L  G W H YI ++    +  D ++   L DMY KCG ++ A  VF  + K+ 
Sbjct: 251 ACAGLGALEQGKWIHTYIEKN---EIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKC 307

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + +W +II G A+HG+   AL +F ++  +   +PNSITF  +L+AC+H G+  EG+  F
Sbjct: 308 VCAWTAIIGGLAIHGKGREALDWFTQMQ-KAGINPNSITFTAILTACSHAGLTEEGKSLF 366

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M + YNI P +EHYGC+VDL+ RAG + EA   + +MP+KP+A IW +LL+A C+ H 
Sbjct: 367 ESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNA-CQLHK 425

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
              L +E+ K +IE +    SG Y+ L+ +YA+A  WN V  VR  +  +G+   PGCSS
Sbjct: 426 HFELGKEIGKILIELDPD-HSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSS 484

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           I ++G+ HEFFAGD SHP  ++IYG  +L+
Sbjct: 485 ITLNGVVHEFFAGDGSHPHIQEIYGMPNLL 514


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 331/604 (54%), Gaps = 49/604 (8%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           ++K++H  A R  +      + + + +IH +     ++ A RVF  +   +  +W +L  
Sbjct: 96  RVKEVHDDATRCGVMSD---VFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL-S 151

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
           +C        + + +F+ M   G V P+  T    L ACA L     GK+ H    + G+
Sbjct: 152 SCYVKCGFPRKGMDVFREMGWSG-VKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 210

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD-------- 218
           V ++++ ++L+  YA C  +  A  VFD M  R +VSWN ++ A+ +  E++        
Sbjct: 211 VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLK 270

Query: 219 ---------------------------SALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
                                       A+++FR+MQ + F+P+  T  SI  AC+    
Sbjct: 271 MSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN 330

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L +G   H Y+ RH     V D+    +L+ MY KCG L+++R VF+ M ++D+ +WN++
Sbjct: 331 LRMGKEIHCYVFRHWK---VGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTM 387

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+  A+HG  + AL  FD++++     PNS+TF GVLS C+H  +V EG   F+ M  ++
Sbjct: 388 IIANAMHGNGKEALFLFDKMLLSR-VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDH 446

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            + P   HY C+VD+ +RAG ++EA   +  MPM+P A  W +LL A C+ + +V L++ 
Sbjct: 447 LVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALL-AACRVYKNVELAKI 505

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            AK++ E E     G YV L  +  +A+ W++   VR LM ++G+TK PGCS +++    
Sbjct: 506 SAKKLFEIEPN-NPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKV 564

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F  GD S+ ++ +IY FLD + EK+K  GY PD +   + D   + K  SL  HSE+L
Sbjct: 565 HTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPD-TDYVLQDIDQEEKAESLCNHSEKL 623

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A GILNL     IRVFKNLR+C DCH   K +S++  V I+VRD  RFHHFK+G+CSC
Sbjct: 624 AVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSC 683

Query: 611 MDYW 614
            D W
Sbjct: 684 KDLW 687



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 187/382 (48%), Gaps = 45/382 (11%)

Query: 73  RIIHFA-SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           R+I  A +  D + A ++F  I  P+  T +TLI A   +     +AI ++  + E+G +
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALT-THGLSNEAIKIYSSLQERG-I 74

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            PD   F  A KACA      + K+ H    + G++SDV++ N+LIH Y  C  ++ A +
Sbjct: 75  KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARR 134

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           VFD+++ R +VSW  +   +V+ G     + +FR M     +P+  T  SI  ACA L  
Sbjct: 135 VFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKD 194

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   H + +R   H +V ++ V ++L+ +Y KC S+  AR VF+ MP RD+ SWN +
Sbjct: 195 LKSGKEIHGFAVR---HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGV 251

Query: 311 IL----------GFAL-------------------------HGRAEAALKYFDRLVVEES 335
           +           GF+L                         +GR+E A++ F R + +  
Sbjct: 252 LTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF-RKMQKMG 310

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
           F PN IT   +L AC+    +  G++    +   + +   L     L+ + A+ G+++ +
Sbjct: 311 FKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGD-LTSTTALLYMYAKCGDLNLS 369

Query: 396 LHLVSNMPMKPDAVIWRSLLDA 417
            + V +M  + D V W +++ A
Sbjct: 370 RN-VFDMMRRKDVVAWNTMIIA 390



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALR--TALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           SS+L + +  +++   K+IH    R          T L+Y     +A   DL+ +  VF 
Sbjct: 319 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLY----MYAKCGDLNLSRNVFD 374

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +   +   WNT+I A A   + K +A+ LF +M+    V P+  TF   L  C++    
Sbjct: 375 MMRRKDVVAWNTMIIANAMHGNGK-EALFLFDKML-LSRVQPNSVTFTGVLSGCSHSRLV 432

Query: 152 SQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMID 209
            +G Q    + +  LV  D    + ++  Y+  G L+ A K    M +E +  +W  ++ 
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 492

Query: 210 AFVQFGEFD----SALKLF 224
           A   +   +    SA KLF
Sbjct: 493 ACRVYKNVELAKISAKKLF 511


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 332/595 (55%), Gaps = 27/595 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           S++++ L+ C S + ++         AL      LL+ + ++  +     ++ A +VF  
Sbjct: 161 SAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDA 220

Query: 93  IENP--NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           ++    +  +WN ++     + D    AI L+QRM     + PDK T+   L AC+    
Sbjct: 221 MDEALRDVVSWNIMLSTYVHN-DRGKDAIQLYQRM----QLRPDKVTYVSLLSACSSAED 275

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G+  H  I    L  +V + N+L+  YA CG    A  VFD M +RS++SW  +I A
Sbjct: 276 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 335

Query: 211 FVQFGEFDSALKLFRRMQIL--------FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           +V+      A  LF++M  L         +PD   F +I +ACA ++ L  G        
Sbjct: 336 YVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSE--- 392

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAE 321
           +     L +D  V  +++++Y KCG ++ AR++F+++  R D+  WN++I  +A  G++ 
Sbjct: 393 QAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSH 452

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY-NITPVLEHYG 380
            ALK F R+ +E    P+S +FV +L AC+H G+  +G+ YF  M  EY N+T  ++H+G
Sbjct: 453 EALKLFWRMEME-GVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFG 511

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+ DLL R G + EA   +  +P+KPDAV W SLL A C+ H  +  ++EVA +++  E 
Sbjct: 512 CVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLL-AACRNHRDLKRAKEVANKLLRLEP 570

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              +G YV LS +YA  ++W+ V  VRK M ++GV KE G S+IEI    H+F  GD +H
Sbjct: 571 RCATG-YVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAH 629

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAA-MVDELDDGKQSSLRLHSERLAIALGILNL 559
           P+ ++I   L  +  ++K  GY PD       VDE +  K+  L  HSERLAIALG+++ 
Sbjct: 630 PRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQE--KERLLFSHSERLAIALGLIST 687

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G P+RV KNLRVC DCH  TKLIS+I   +I+VRD  RFH FKDG CSC DYW
Sbjct: 688 PLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 170/336 (50%), Gaps = 15/336 (4%)

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  +E  N ++W  L+ A A S  +K + +   +RM + G V PD  TF  AL +C    
Sbjct: 15  FDALEQRNLYSWTGLVAAFAISGQSK-ETLRALERMRQDG-VRPDAVTFITALGSCGDPE 72

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMI 208
           +   G + H  +    L  D  ++N+L++ Y  CG L  A +VF  M   R+++SW++M 
Sbjct: 73  SLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMA 132

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A    G    AL+ FR M +L  +       +I SAC+  A +  G   H+ I      
Sbjct: 133 GAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIAL---S 189

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALK 325
              +++LV N+++ MY +CG+++ AR+VF++M +  RD+ SWN ++  +  + R + A++
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            + R+       P+ +T+V +LSAC+    V  GR     ++N+     V+     LV +
Sbjct: 250 LYQRM----QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG-NALVSM 304

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            A+ G+  EA  +   M  +   + W +++ A  ++
Sbjct: 305 YAKCGSHTEARAVFDKMEQR-SIISWTTIISAYVRR 339



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 126/296 (42%), Gaps = 41/296 (13%)

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYT 237
            YA C     A   FD + +R+L SW  ++ AF   G+    L+   RM Q    PD  T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
           F +   +C    +L  G+  H  ++   D  L  D  V+N+L++MY KCGSL  A++VF 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVV---DSRLEIDPKVSNALLNMYKKCGSLSHAKRVFA 117

Query: 298 SMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
            M + R++ SW+ +    ALHG    AL++F R ++           V +LSAC+   +V
Sbjct: 118 KMERTRNVISWSIMAGAHALHGNVWEALRHF-RFMLLLGIKATKSAMVTILSACSSPALV 176

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE---------------------- 394
            +GR      I        L     ++ +  R G ++E                      
Sbjct: 177 QDGR-MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 235

Query: 395 -----------ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
                      A+ L   M ++PD V + SLL AC      V L   + KQ++  E
Sbjct: 236 STYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAE-DVGLGRVLHKQIVNDE 290


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 334/602 (55%), Gaps = 22/602 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           F   R  G      +  S++  C S+  +   KQ+H  AL+  +  +   L + S +   
Sbjct: 29  FCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE---LFVGSNLEDM 85

Query: 78  ASFADLDY-AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            S     + A +VF ++   +  +W  +I   ++ +    +A++ F++MI++  V  D+H
Sbjct: 86  YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK-IGEFEEALLAFKKMIDE-EVTIDQH 143

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                L AC  L A   G+  H+ + K G  SD+++ N+L   Y+  G ++ A+ VF   
Sbjct: 144 VLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGID 203

Query: 197 LE-RSLVSWNVMIDAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLS 252
            E R++VS+  +ID +V+  + +  L +F   RR  I  EP+ +TF S+  ACA  A L 
Sbjct: 204 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI--EPNEFTFSSLIKACANQAALE 261

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HA +++    +   D  V++ L+DMY KCG L+ A Q F+ +      +WNS++ 
Sbjct: 262 QGTQLHAQVMKI---NFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVS 318

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            F  HG  + A+K F+R+V +    PN+ITF+ +L+ C+H G+V EG DYF  M   Y +
Sbjct: 319 VFGQHGLGKDAIKIFERMV-DRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 377

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P  EHY C++DLL RAG + EA   ++ MP +P+A  W S L AC + H    + +  A
Sbjct: 378 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC-RIHGDKEMGKLAA 436

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           +++++ E    SG  VLLS +YA+ R+W DV  VR  M D  V K PG S +++    H 
Sbjct: 437 EKLVKLEPKN-SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 495

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F A D SHP+   IY  LD + +++K+ GY P  + +  +D  D  K+  L  HSER+A+
Sbjct: 496 FGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP-RTDSVPLDMDDSMKEKLLHRHSERIAV 554

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A  ++++  G PI V KNLRVC DCH   K IS++   +IIVRD +RFHHF DGSCSC D
Sbjct: 555 AFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGD 614

Query: 613 YW 614
           YW
Sbjct: 615 YW 616



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 154/322 (47%), Gaps = 12/322 (3%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
           N  +W  +I   +++     +AI  F  M   G V P +  F  A++ACA L +   GKQ
Sbjct: 5   NLVSWTAMISGLSQN-SKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQ 62

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H    K G+ S++++ ++L   Y+ CG +  A KVF+ M  +  VSW  MID + + GE
Sbjct: 63  MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 122

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           F+ AL  F++M       D +   S   AC  L     G   H+ +++       +D+ V
Sbjct: 123 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK---LGFESDIFV 179

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
            N+L DMY K G ++ A  VF    + R++ S+  +I G+    + E  L  F  L   +
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL-RRQ 238

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
              PN  TF  ++ AC ++  + +G   +  VM   ++  P +     LVD+  + G ++
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLE 296

Query: 394 EALHLVSNMPMKPDAVIWRSLL 415
           +A+     +   P  + W SL+
Sbjct: 297 QAIQAFDEIG-DPTEIAWNSLV 317



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 37/262 (14%)

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLG 254
           M +R+LVSW  MI    Q  +F  A++ F  M+I  E P  + F S   ACA L ++ +G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H   L+     + +++ V ++L DMY KCG++  A +VFE MP +D  SW ++I G+
Sbjct: 61  KQMHCLALK---FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 117

Query: 315 ALHGRAEAALKYFDRLVVEESFSP-----NSITFVGVLSACN-----HRGMVSEG--RDY 362
           +  G  E AL  F +++ EE         +++   G L AC      H  +V  G   D 
Sbjct: 118 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 177

Query: 363 F--DVMINEYNITPVLE----------------HYGCLVDLLARAGNIDEALHLVSNM-- 402
           F  + + + Y+    +E                 Y CL+D       I++ L +   +  
Sbjct: 178 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 237

Query: 403 -PMKPDAVIWRSLLDACCKKHA 423
             ++P+   + SL+ AC  + A
Sbjct: 238 QGIEPNEFTFSSLIKACANQAA 259



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 40/245 (16%)

Query: 5   IVQGGPPTPQTHSH-SIFNNNRNEGSFNNH---SSLLSSLTECKSMSQLKQIHAQALRTA 60
           ++ G   T Q     S+F   R +G   N    SSL+ +     ++ Q  Q+HAQ ++  
Sbjct: 215 LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 274

Query: 61  LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV 120
             +      I   +  +     L+ A + F +I +P    WN+L+    +    K  AI 
Sbjct: 275 FDEDPFVSSIL--VDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGK-DAIK 331

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           +F+RM+++G V P+  TF   L  C           +HA + + G          L +FY
Sbjct: 332 IFERMVDRG-VKPNAITFISLLTGC-----------SHAGLVEEG----------LDYFY 369

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240
           +    +D    V       S V     ID   + G    A +   RM   FEP+ + + S
Sbjct: 370 S----MDKTYGVVPGEEHYSCV-----IDLLGRAGRLKEAKEFINRMP--FEPNAFGWCS 418

Query: 241 ITSAC 245
              AC
Sbjct: 419 FLGAC 423


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/580 (34%), Positives = 324/580 (55%), Gaps = 15/580 (2%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +L ++ E + +    QIH+ A +T        L  +  I  ++    +     +F +   
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF--ISLYSKCGKIKMGSALFREFRK 284

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+   +N +I     + + +  ++ LF+ ++  G  L           +   +  ++   
Sbjct: 285 PDIVAYNAMIHGYTSNGETE-LSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA--- 340

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H +  K   +S   ++ +L   Y+    ++ A K+FD   E+SL SWN MI  + Q G
Sbjct: 341 -IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             + A+ LFR MQ   F P+  T   I SACA L  LSLG W H  ++R  D    + + 
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFE--SSIY 456

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V+ +LI MY KCGS+  AR++F+ M K++  +WN++I G+ LHG+ + AL  F  ++   
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEML-NS 515

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
             +P  +TF+ VL AC+H G+V EG + F+ MI+ Y   P ++HY C+VD+L RAG++  
Sbjct: 516 GITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQR 575

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           AL  +  M ++P + +W +LL AC + H    L+  V++++ E +     G +VLLS ++
Sbjct: 576 ALQFIEAMSIEPGSSVWETLLGAC-RIHKDTNLARTVSEKLFELDPDNV-GYHVLLSNIH 633

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           ++ R +     VR+    + + K PG + IEI    H F +GD SHPQ K+IY  L+ ++
Sbjct: 634 SADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLE 693

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            K++  GY P+ ++ A+ D  ++ ++  +++HSERLAIA G++  +PG  IR+ KNLRVC
Sbjct: 694 GKMREAGYQPE-TELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVC 752

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH VTKLIS+I    I+VRD  RFHHFKDG CSC DYW
Sbjct: 753 LDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 17/371 (4%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           + IH QA+      +   LL+ S I+  +  F  ++ A +VF ++   ++  WNT+I   
Sbjct: 139 RVIHGQAVVDGCDSE---LLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISG- 194

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
            R  +   ++I +F+ +I +     D  T    L A A L     G Q H+   K G  S
Sbjct: 195 YRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS 254

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
             Y+    I  Y+ CG + + + +F    +  +V++N MI  +   GE + +L LF+ + 
Sbjct: 255 HDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM 314

Query: 229 ILFEPDGYTFQSIT--SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
           +     G   +S T  S       L L    H Y L+    + ++   V+ +L  +Y K 
Sbjct: 315 L----SGARLRSSTLVSLVPVSGHLMLIYAIHGYCLK---SNFLSHASVSTALTTVYSKL 367

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
             ++ AR++F+  P++ L SWN++I G+  +G  E A+  F R + +  FSPN +T   +
Sbjct: 368 NEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLF-REMQKSEFSPNPVTITCI 426

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC   G +S G+   D ++   +    +     L+ + A+ G+I EA  L   M  K 
Sbjct: 427 LSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKK 484

Query: 407 DAVIWRSLLDA 417
           + V W +++  
Sbjct: 485 NEVTWNTMISG 495



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 11/311 (3%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S+S L Q HAQ +      ++   L+       +    + YA  +F  ++ P+ F +N L
Sbjct: 32  SISHLAQTHAQIILHGF--RNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVL 89

Query: 105 IRACARSVDAKPQA-IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           +R    SV+  P + + +F  + +  ++ P+  T+ FA+ A +       G+  H     
Sbjct: 90  MRGF--SVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
            G  S++ + ++++  Y     ++ A KVFD M E+  + WN MI  + +   +  ++++
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 224 FRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           FR +  +     D  T   I  A A L  L LGM  H+   +   +S      V    I 
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS---HDYVLTGFIS 264

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           +Y KCG + +   +F    K D+ ++N++I G+  +G  E +L  F  L++  +    S 
Sbjct: 265 LYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA-RLRSS 323

Query: 342 TFVGVLSACNH 352
           T V ++    H
Sbjct: 324 TLVSLVPVSGH 334


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/539 (39%), Positives = 295/539 (54%), Gaps = 48/539 (8%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L  A R+F  + + +   WN +I  C+        A+ L  +M E+G + P+  
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL-YGLCDDAVQLIMQMQEEG-ICPNSS 211

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L  C  L                                        A K+FD M
Sbjct: 212 TIVGVLPTCQCLL--------------------------------------YARKIFDVM 233

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
             R+ VSW+ MI  +V       AL +FR MQ+   +PD  T   +  AC+ LA L  G 
Sbjct: 234 GVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF 293

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
            +H Y++        TD L+ N+LIDMY KCG +  AR+VF  M + D+ SWN++I+G+ 
Sbjct: 294 CSHGYLIVR---GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 350

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           +HG    AL  F  L+      P+ ITF+ +LS+C+H G+V EGR +FD M  +++I P 
Sbjct: 351 IHGLGMEALGLFHDLLAL-GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPR 409

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EH  C+VD+L RAG IDEA H + NMP +PD  IW +LL AC + H ++ L EEV+K+ 
Sbjct: 410 MEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSAC-RIHKNIELGEEVSKK- 467

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           I+S G   +G +VLLS +Y++A RW+D   +R    D G+ K PGCS IEI+GI H F  
Sbjct: 468 IQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVG 527

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD SH Q  QI   L+ +  ++K  GY  + S     D  ++ K+  L  HSE+LAIA G
Sbjct: 528 GDQSHLQLSQINRKLEELLVEMKRLGYQAECS-FVFQDVEEEEKEQILLYHSEKLAIAFG 586

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ILNLK G PI V KNLRVC DCH   K ++ I   EI VRD  RFHHFK+G+C+C D+W
Sbjct: 587 ILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 182/385 (47%), Gaps = 47/385 (12%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           NN+  LL +  + KS+++ K+IH   L+         L   +R+  + S   +  A R+F
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRL--YLSCNQVVLARRLF 66

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            +I NP+   WN +IRA A +      AI L+  M+  G V P+K+T+PF LKAC+ L A
Sbjct: 67  DEIPNPSVILWNQIIRAYAWN-GPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLA 124

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G + H+H    GL SDV++  +L+ FYA CG L  A ++F +M  R +V+WN MI  
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              +G  D A++L  +MQ     +G                             C +S  
Sbjct: 185 CSLYGLCDDAVQLIMQMQ----EEGI----------------------------CPNS-- 210

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                 ++++ +   C  L  AR++F+ M  R+  SW+++I G+      + AL  F R+
Sbjct: 211 ------STIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF-RM 263

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +      P+  T +GVL AC+H   +  G      +I     T  L     L+D+ ++ G
Sbjct: 264 MQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-CNALIDMYSKCG 322

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
            I  A  + + M  + D V W +++
Sbjct: 323 KISFAREVFNRMD-RHDIVSWNAMI 346



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 14/287 (4%)

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           K+ +   L+AC    + ++ K+ H H  K    +D  + + L   Y SC  + LA ++FD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSL 253
            +   S++ WN +I A+   G FD A+ L+  M  +   P+ YT+  +  AC+GL  +  
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G+  H++        L +DV V  +L+D Y KCG L  A+++F SM  RD+ +WN++I G
Sbjct: 128 GVEIHSHAKM---FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM--INEYN 371
            +L+G  + A++   ++  EE   PNS T VGVL  C     +   R  FDVM   NE +
Sbjct: 185 CSLYGLCDDAVQLIMQM-QEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVMGVRNEVS 240

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            + ++  Y    D +  A +I   + L     + PD      +L AC
Sbjct: 241 WSAMIGGY-VASDCMKEALDIFRMMQLSG---IDPDLTTMLGVLPAC 283


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 337/602 (55%), Gaps = 23/602 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F+ +R        S+  + +  C ++ QL   +Q+H+  L+      H T  + + +  
Sbjct: 289 LFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF---HLTGNVMTALAD 345

Query: 77  -FASFADLDYAFRVFYQIENP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
            ++   +L  A  +F       N  +W  +I  C ++ D  P A+VLF RM E   V+P+
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI-PLAVVLFSRMRED-RVMPN 403

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + T+   LKA   +       Q HA + K        +  +L+  Y+  G  + A  +F 
Sbjct: 404 EFTYSAMLKASLSILP----PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFK 459

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA-GLATLS 252
            + ++ +V+W+ M+    Q G+ + A  LF +M I   +P+ +T  S+  ACA   A + 
Sbjct: 460 MIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVD 519

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HA  +++  H  +    V+++L+ MY + G++D A+ VFE    RDL SWNS+I 
Sbjct: 520 QGRQFHAISIKYRYHDAIC---VSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMIS 576

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A HG +  A++ F R +       + +TF+ V+  C H G+V EG+ YFD M+ ++ I
Sbjct: 577 GYAQHGYSMKAIETF-RQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKI 635

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P +EHY C+VDL +RAG +DE + L+ +MP    A++WR+LL AC + H +V L +  A
Sbjct: 636 NPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGAC-RVHKNVELGKFSA 694

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
            +++  E    S  YVLLS +YA+A +W +   VRKLM  + V KE GCS I+I    H 
Sbjct: 695 DKLLSLEPHD-SSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHS 753

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F A D SHP + QIY  L +I  +LK  GY+P+ S   + D  +D K++ L  HSERLA+
Sbjct: 754 FIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTS-FVLHDIAEDQKEAMLVAHSERLAL 812

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G++   PG P+++ KNLRVC DCH V K++S I + EII+RD +RFHHF  G+CSC D
Sbjct: 813 AFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGD 872

Query: 613 YW 614
           +W
Sbjct: 873 FW 874



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 174/372 (46%), Gaps = 39/372 (10%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
              VF  +   N  TW +L+  CA +     + + LF RM  +G + P+  TF   L A 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHA-QMHSEVMALFFRMRAEG-IWPNPFTFASVLSAV 211

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A   A   G++ HA   K G  S V++ NSL++ YA CG ++ A  VF+ M  R +VSWN
Sbjct: 212 ASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 206 VMIDAFVQFGEFD-SALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
            ++ A +Q  E +  AL+LF   +  + +    T+ ++   CA L  L+L    H+ +L+
Sbjct: 272 TLM-AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE-SMPKRDLTSWNSIILGFALHGRAEA 322
           H  H L  +V+   +L D Y KCG L  A  +F  +   R++ SW +II G   +G    
Sbjct: 331 HGFH-LTGNVM--TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPL 387

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSA---------------CNHRGMVSEGR------D 361
           A+  F R+  E+   PN  T+  +L A                N++ + S G        
Sbjct: 388 AVVLFSRM-REDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYS 446

Query: 362 YFDVMINEYNITPVLEH-----YGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRS 413
            F    +  +I  ++E      +  ++   A+AG+ + A +L + M    +KP+     S
Sbjct: 447 KFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISS 506

Query: 414 LLDACCKKHASV 425
           ++DAC    A V
Sbjct: 507 VIDACACPSAGV 518



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHL 186
           +G VL D  T    LKAC  +     G+Q H    K G    +V    SL+  Y  CG +
Sbjct: 92  RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSV 151

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
               +VF+ M ++++V+W  ++            + LF RM+     P+ +TF S+ SA 
Sbjct: 152 CEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAV 211

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A    L LG   HA  ++       + V V NSL++MY KCG ++ A+ VF  M  RD+ 
Sbjct: 212 ASQGALDLGQRVHAQSVK---FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMV 268

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD- 364
           SWN+++ G  L+     AL+ F            S T+  V+  C +   ++  R     
Sbjct: 269 SWNTLMAGLQLNECELEALQLFHESRATMGKMTQS-TYATVIKLCANLKQLALARQLHSC 327

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           V+ + +++T  +     L D  ++ G + +AL++ S      + V W +++  C
Sbjct: 328 VLKHGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/530 (38%), Positives = 308/530 (58%), Gaps = 10/530 (1%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A ++F  +   +S +W T+I    ++   K +A+  F+ M  +G  + D+ TF   L AC
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFK-EAVDKFKEMGIEGFCM-DQFTFGSVLTAC 280

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
               A  +GKQ HA+I +     ++++ ++L+  Y  C ++  A  VF  M  ++++SW 
Sbjct: 281 GGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWT 340

Query: 206 VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            M+  + Q G  + A+++F  MQ     PD +T  S+ S+CA LA+L  G   H   L  
Sbjct: 341 AMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALAS 400

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L+  V V+N+LI +Y KCGSL+ A Q+F  M  RD  SW +++ G+A  G+A   +
Sbjct: 401 ---GLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETI 457

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F+ ++      P+ +TFVGVLSAC+  G+V +G  YF+ M+ E+ ITP+ +HY C++D
Sbjct: 458 SLFETMLAH-GIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMID 516

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL+RAG ++EA + ++ MP  PDA+ W +LL + C+ + ++ + +  A+ + + E     
Sbjct: 517 LLSRAGRLEEAKNFINQMPFSPDAIGWATLLSS-CRLNGNLEIGKWAAESLHKLEPQ-NP 574

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
             Y+LLS +YA+  +W+DV  +RK M + GV KEPG S I+     H F A D S P + 
Sbjct: 575 ASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSD 634

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           QIY  L+ +  K+   GY PD S   + D     K   L  HSE+LAIA G+L +  G+ 
Sbjct: 635 QIYAKLESLYLKMIEEGYVPDMS-FVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQ 693

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCH  TK ISRI   EI+VRD  RFH FKDG CSC D+W
Sbjct: 694 IRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 218/489 (44%), Gaps = 73/489 (14%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           S N +++ L    E ++ +Q+K++H + +RT    +  T L  + I  +    DL  A  
Sbjct: 4   SSNYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPE--TFLYNNLINTYGKLGDLKNARN 61

Query: 89  VFYQIENPNSFTWNTLIRACA---------RSVDAKP---------------------QA 118
           VF  I  PN F+WNTL+ A +         R  D+ P                     ++
Sbjct: 62  VFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISES 121

Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
           + ++  M++ G+V  ++ TF   L   +       G+Q H  IFK G  S +++ + L+ 
Sbjct: 122 VRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVD 181

Query: 179 FYASCGHLDLANKV-------------------------------FDNMLERSLVSWNVM 207
            YA  G ++ AN++                               FDNM E+  +SW  +
Sbjct: 182 MYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTI 241

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I    Q G F  A+  F+ M I  F  D +TF S+ +AC G   L  G   HAYI+R  D
Sbjct: 242 ITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIR-TD 300

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           +    ++ V ++L+DMYCKC ++  A  VF  M  +++ SW ++++G+  +G +E A++ 
Sbjct: 301 YQ--DNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRI 358

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +   E   P+  T   V+S+C +   + EG  +    +    I  V      L+ L 
Sbjct: 359 FCDMQRNE-IHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVS-NALITLY 416

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGIC 443
            + G+++ A  L   M ++ D V W +L+       K + ++ L E +    I  +G   
Sbjct: 417 GKCGSLEHAHQLFHEMKIR-DEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTF 475

Query: 444 SGVYVLLSR 452
            GV    SR
Sbjct: 476 VGVLSACSR 484


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/627 (35%), Positives = 333/627 (53%), Gaps = 60/627 (9%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           +++G   + ++  SSLT C  +S L   KQ+HAQ +R  LP       + S ++  +A  
Sbjct: 262 QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LPCIDP--YVASALVELYAKC 318

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
                A  VF  + + N+  W  LI    +      +++ LF +M  +   L D+     
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLIAGFLQH-GCFTESVELFNQMRAELMTL-DQFALAT 376

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC----------------- 183
            +  C        G+Q H+   K G +  V ++NSLI  YA C                 
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKD 436

Query: 184 --------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-- 227
                         G++  A + FD M  +++++WN M+ A++Q G  +  L+++  M  
Sbjct: 437 IVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLS 496

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +    PD  T+ ++   CA L    LG      I R     L+ D  V N++I MY KCG
Sbjct: 497 EKDVRPDWVTYVTLFKGCADLGANKLG---DQIIGRTVKVGLILDTSVANAVITMYSKCG 553

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            +  AR+VF+ +  +D+ SWN++I G++ HG  + A++ FD  +++    P+ I++V VL
Sbjct: 554 RILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDD-ILKRGAKPDYISYVAVL 612

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           S C+H G+V EG+ YFD+M   +NI+P LEH+ C+VDLL RAG++ EA  L+  MPMKP 
Sbjct: 613 SGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPT 672

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           A +W +LL A CK H +  L+E  AK V E +    SG Y+L++++YA A + +D   +R
Sbjct: 673 AEVWGALLSA-CKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIR 730

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           KLM DKG+ K PG S +E++   H F A D SHPQ   I   LD + EK+   GY     
Sbjct: 731 KLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVR--- 787

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
                    D  +S +  HSE+LA+A G+++L   MPI + KNLR+C DCH V KLIS +
Sbjct: 788 --------TDSPRSEIH-HSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSV 838

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
              E ++RD  RFHHF  GSCSC DYW
Sbjct: 839 TGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 11/304 (3%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S ++ +     +D+A  +F  +   +  +WN ++ A ++S   + +A+ +   M  +G V
Sbjct: 209 SMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVR-EALDMVVDMQSKG-V 266

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
             D  T+  +L ACA L +   GKQ HA + +     D Y+ ++L+  YA CG    A  
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLAT 250
           VF+++ +R+ V+W V+I  F+Q G F  +++LF +M+  L   D +   ++ S C     
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H+  L+      +  V+V+NSLI MY KC +L  A  +F  M ++D+ SW S+
Sbjct: 387 LCLGRQLHSLCLK---SGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSM 443

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I   +  G    A ++FD +  +     N IT+  +L A    G   +G   ++VM++E 
Sbjct: 444 ITAHSQVGNIAKAREFFDGMSTK-----NVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498

Query: 371 NITP 374
           ++ P
Sbjct: 499 DVRP 502



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 175/410 (42%), Gaps = 53/410 (12%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIH------------FASFADLDYAFRVFYQIENPNSF 99
           +HA     ALP   + LL  + I H            +     L  A  +F ++   +  
Sbjct: 46  LHAYLSCGALPDARRLLL--TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVA 103

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WNTL+    +S      ++  F  M   G+  P+  TF +A+K+C  L   S   Q   
Sbjct: 104 SWNTLMSGYFQS-QQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG 162

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF-------------------------- 193
            + K G   D  +  +L+  +  CG +DLA+++F                          
Sbjct: 163 MVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDH 222

Query: 194 -----DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
                D+M ER +VSWN+M+ A  Q G    AL +   MQ      D  T+ S  +ACA 
Sbjct: 223 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 282

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L++L  G   HA ++R+       D  V ++L+++Y KCG    A+ VF S+  R+  +W
Sbjct: 283 LSSLRWGKQLHAQVIRNLP---CIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAW 339

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
             +I GF  HG    +++ F+++   E  + +      ++S C  R  +  GR    + +
Sbjct: 340 TVLIAGFLQHGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCLGRQLHSLCL 398

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               I  V+     L+ + A+  N+  A  +   M  K D V W S++ A
Sbjct: 399 KSGQIQAVVVS-NSLISMYAKCDNLQSAESIFRFMNEK-DIVSWTSMITA 446



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 80/330 (24%)

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK-VFD 194
             F  AL++C    A +  +  H  +   GL S V++ N+L+H Y SCG L  A + +  
Sbjct: 5   QAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLT 64

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-------------------QILF---- 231
           ++   ++++ NVM++ +V+ G    A++LF RM                   Q L     
Sbjct: 65  DIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLES 124

Query: 232 ----------EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
                      P+ +TF     +C  L   SL +     + +        D  V  +L+D
Sbjct: 125 FVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQD---DSDVAAALVD 181

Query: 282 MYCKCGSLDIAR-------------------------------QVFESMPKRDLTSWNSI 310
           M+ +CG++D+A                                ++F+SMP+RD+ SWN +
Sbjct: 182 MFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 311 ILGFALHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           +   +  GR   AL     +VV+   +    +S T+   L+AC     +  G+     +I
Sbjct: 242 VSALSQSGRVREALD----MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 297

Query: 368 NEYNITPVLEHY--GCLVDLLARAGNIDEA 395
                 P ++ Y    LV+L A+ G   EA
Sbjct: 298 RNL---PCIDPYVASALVELYAKCGCFKEA 324


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/519 (38%), Positives = 292/519 (56%), Gaps = 44/519 (8%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC------ 183
            +L D       L+AC +   F    Q+HA I K G  +   +  SL+  YA C      
Sbjct: 15  GILSDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLA 74

Query: 184 ---------------------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
                                      G  D A +VF  ML R +V+WN MI   V+   
Sbjct: 75  HQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNER 134

Query: 217 FDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
           F+ AL+ FR M     EPDG+TF S+ + CA L +       H  ++   +  +  + ++
Sbjct: 135 FEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMI---EKKIQLNFIL 191

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           +++LID+Y KCG ++ A++VF S+   D++ WNS+I G A+HG A  A+  F ++ +E S
Sbjct: 192 SSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEME-S 250

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            SP+SITF+G+L+AC+H G+V +GR YFD+M   Y+I P LEHYG +VDLL RAG ++EA
Sbjct: 251 VSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEA 310

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             ++  MPM+PD VIWR+LL AC         + E+ +  I     + SG Y+LLS +Y 
Sbjct: 311 YAMIKAMPMEPDIVIWRALLSAC-----RNFKNPELGEVAIAKISHLNSGDYILLSNMYC 365

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           S  +W+    VR++M   GV K  G S +E+ G+ H+F AGD SHP+T  IY  L+ +  
Sbjct: 366 SLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIR 425

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           + K  G+ P  +   ++D  D+ ++ +L  HSE+LA+A  IL   PG  IRV KNLR C 
Sbjct: 426 RTKLEGFMP-ATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCH 484

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   K++SR+ +  IIVRDR RFH F+ G CSC DYW
Sbjct: 485 DCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 136/281 (48%), Gaps = 12/281 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFADLDYAFRVFYQ 92
           +SL+S+   C  +       A  L   +P     L+  + II       + D+A RVF +
Sbjct: 59  TSLVSTYAHCDCLDL-----AHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRK 113

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  TWN++I  C R+ +   +A+  F+ M+   NV PD  TF   +  CA L +  
Sbjct: 114 MLRRDVVTWNSMIGGCVRN-ERFEEALRFFREML-NSNVEPDGFTFASVINGCARLGSSH 171

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
             +  H  + ++ +  +  ++++LI  Y+ CG ++ A KVF+++    +  WN MI+   
Sbjct: 172 HAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLA 231

Query: 213 QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G    A+ +F +M++    PD  TF  I +AC+    +  G      + RH  +S+  
Sbjct: 232 IHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRH--YSIQP 289

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
            +    +++D+  + G ++ A  + ++MP + D+  W +++
Sbjct: 290 QLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALL 330


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/535 (38%), Positives = 307/535 (57%), Gaps = 10/535 (1%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  A ++F ++   N  TWN ++ A   ++    +++  F  M  +G + PD+     
Sbjct: 121 GDLGGARKLFDEMPERNVATWNAMV-AGLTNLGFDEESLGFFLDMRREG-MHPDEFGLGS 178

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
             + CA L     G+Q HA++ + GL  D+ + +SL H Y  CG L     V   +   S
Sbjct: 179 VFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLS 238

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           +VS N +I    Q G+ + AL+ F  M+ +    D  TF S  S+C+ LA L+ G   H 
Sbjct: 239 IVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHG 298

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
            +++     +V    V   L+ MY +CG L  + +VF      D    +++I  +  HG 
Sbjct: 299 QVMKAGVDKVVP---VMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGH 355

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            + A++ F +++      P+ +TF+ +L AC+H G+  EG D F++M   Y + P ++HY
Sbjct: 356 GQKAIELFKQMM-NGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 414

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL R+G +DEA  L+ +MP+ PD VIW++LL AC K   +  ++E +AK+VIE +
Sbjct: 415 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC-KTQKNFDMAERIAKRVIELD 473

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               S  YVLLS + A++RRW DV  VRK M D  V KEPG S +E+ G  H+F  GD S
Sbjct: 474 PHD-SASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDES 532

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP+ K+I   L+ +  K++  GY+PD S   + D  D+ K+ SL  HSE+LAIA   L+L
Sbjct: 533 HPRQKEIDECLEEMMAKIRQCGYSPDMSMV-LHDMEDEEKEVSLSHHSEKLAIAFAFLSL 591

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G+PIRV KNLRVC DCH   KL+S++   EI+VRD +RFHHFKDG CSC DYW
Sbjct: 592 PEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 40/290 (13%)

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F    +AC  L      +Q HA     G  +D +  N L+  YA  G L  A ++F+ + 
Sbjct: 47  FSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 103

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRM----------------QILFE--------- 232
            R+++SWN++   +++ G+   A KLF  M                 + F+         
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 163

Query: 233 -------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                  PD +   S+   CAGL  +  G   HAY++R     L  D+ V +SL  MY +
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVR---SGLDRDMCVGSSLAHMYMR 220

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG L     V   +P   + S N+II G   +G +E AL+YF  ++     + + +TFV 
Sbjct: 221 CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVS 279

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            +S+C+    +++G+      + +  +  V+    CLV + +R G + ++
Sbjct: 280 AISSCSDLAALAQGQQIHG-QVMKAGVDKVVPVMTCLVHMYSRCGCLGDS 328



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 209 DAFVQF---GEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           D FV+    G    AL+  FR   +L+      F  +  AC  L  L      HA+    
Sbjct: 16  DEFVRLCATGRLRDALRRPFR--GVLWSDAARLFSHLFRACRALRPLR---QLHAFA--- 67

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                 TD    N L+  Y   G L  AR++FE +P+R++ SWN +  G+  +G    A 
Sbjct: 68  ATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGAR 127

Query: 325 KYFDRL 330
           K FD +
Sbjct: 128 KLFDEM 133


>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
 gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
          Length = 555

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/533 (38%), Positives = 303/533 (56%), Gaps = 40/533 (7%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +P +F++N+ IRA AR    +P  AI L++ M+      P+ +T+P  L ACA L     
Sbjct: 50  HPTTFSYNSAIRALARG--PRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDS 107

Query: 154 ---------GKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
                    G   HA +F+RGL S D +I  SL+  YA+ G L  A +VFD         
Sbjct: 108 SSAAAAAAAGVALHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQVFD--------- 158

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
                        +   L+LFR M+     D  T  ++ SACA L  L    WAHAY+  
Sbjct: 159 -------LSPPNHYVQVLRLFRTMRT---ADHVTLLALLSACAHLGALHTARWAHAYLAT 208

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR--DLTSWNSIILGFALHGRAE 321
            C   + T++    +L++MY +CG +  A  +F S P R  D+ +W  +I G AL+G + 
Sbjct: 209 TCSFPITTNL--ATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFST 266

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL  F  +  + +  P+S+T   VLSAC H GMV EG+     M  +Y++ P +EHYGC
Sbjct: 267 DALHLFTHMK-DHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGC 325

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
            VDLL RAG ++EAL L+  +P K D  +W +LL AC + H +  + + VA +++  +  
Sbjct: 326 TVDLLGRAGLLEEALALIRAVPFKADVALWGALLVAC-RCHRNFEMGQMVAMEILRLDPQ 384

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             +G +V LS VYA+A +W+ V  VR  M    + K PG S +E+DG+ +EF +GD SHP
Sbjct: 385 H-AGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHP 443

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
           Q+ QIY  LD I + L  +G+ P  ++    D  ++ K+  +  HSE+LA+A G++N + 
Sbjct: 444 QSDQIYAMLDEIGKTLSLKGHKPA-TKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRR 502

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           G  IR+ KNLR+C+DCH V K++S +++  I+VRDR RFHHFK GSCSC+DYW
Sbjct: 503 GAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW 555


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 324/587 (55%), Gaps = 26/587 (4%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           +++LL SL   +++   +QIHA  +R  L        I + I++ +     L  A RVF 
Sbjct: 185 YTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNAS---IETGIVNMYVKCGWLVGAKRVFD 241

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           Q+       W  L+    ++  A+  A+ LF  +I +G V  D   F   LKACA L   
Sbjct: 242 QMAVKKPVAWTGLMVGYTQAGRAR-DALKLFVDLITEG-VEWDSFVFSVVLKACASLEEL 299

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             GKQ HA + K GL  +V +   L+ FY  C   + A + F  + E + VSW+ +I  +
Sbjct: 300 RFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGY 359

Query: 212 VQFGEFDSALKLFR--RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
            Q  +F+ A+K F+  R +     + +T+ SI  AC+ LA  ++G   HA  ++    SL
Sbjct: 360 CQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKR---SL 416

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           +      ++LI MY KCG LD A +VFESM   D+ +W + I G A +G A  AL+ F++
Sbjct: 417 IGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEK 476

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           +V      PNS+TF+ VL+AC+H G+V +G+ Y D M+ +YN+ P ++HY C++D+ AR+
Sbjct: 477 MV-SCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARS 535

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G +DEAL  + NMP +PDA+ W+  L  C   H ++ L +   +++ + +    +G YVL
Sbjct: 536 GLLDEALRFMKNMPFEPDAMSWKCFLSGCW-THKNLELGKIAGEELRQLDPEDTAG-YVL 593

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
              +Y  A +W +   V KLM ++ + KE  CS I+  G  H F  GD  HPQ+++IY  
Sbjct: 594 PFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEK 653

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL--NLKPGMPIRV 567
           L   D  ++      D  Q +M +     ++  L  HSERLAIA G++  N     PI+V
Sbjct: 654 LKEFDGFMEG-----DMFQCSMTE-----RREQLLDHSERLAIAFGLISVNGNARAPIKV 703

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           FKNLR C DCHE  K +S +   EI++RD  RFHHFK+G CSC DYW
Sbjct: 704 FKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 199/433 (45%), Gaps = 45/433 (10%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAF 87
           S  ++  L  +  E +S+S  + +H    R  +  ++ ++L+ + ++  +     L+ A 
Sbjct: 80  SLYSYQCLFEACRELRSLSHGRLLHN---RMRMGIENPSVLLQNCVLQMYCECGSLEDAD 136

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           ++F ++ + N+ +  T+I A A       +A+ LF RM+E G+  P    +   LK+   
Sbjct: 137 KLFDEMSDLNAVSRTTMISAYAEQ-GLLDKAVGLFSRMLESGDK-PPSSMYTTLLKSLVN 194

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
             A   G+Q HAH+ + GL S+  I   +++ Y  CG L  A +VFD M  +  V+W  +
Sbjct: 195 PRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGL 254

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           +  + Q G    ALKLF  +     E D + F  +  ACA L  L  G   HA + +   
Sbjct: 255 MVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAK--- 311

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  +V V   L+D Y KC S + A + F+ + + +  SW++II G+    + E A+K 
Sbjct: 312 LGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKT 371

Query: 327 FDRLVVEESFSPNSITFV------GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY- 379
           F  L  + +   NS T+        VL+ CN  G V        ++ ++Y  + ++  Y 
Sbjct: 372 FKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYS 431

Query: 380 --GCLVDL---------------------LARAGNIDEALHLVSNM---PMKPDAVIWRS 413
             GCL D                       A  GN  EAL L   M    MKP++V + +
Sbjct: 432 KCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIA 491

Query: 414 LLDACCKKHASVV 426
           +L AC   HA +V
Sbjct: 492 VLTAC--SHAGLV 502


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 329/585 (56%), Gaps = 18/585 (3%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SLLS+ TE    ++   IH+ +++  L  +   L + +++I  +A F  L    +VF ++
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESE---LFVSNKLIDLYAEFGRLRDCQKVFDRM 308

Query: 94  ENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
              +  +WN++I+A    ++ +P +AI LFQ M     + PD  T        + L    
Sbjct: 309 YVRDLISWNSIIKA--YELNEQPLRAISLFQEM-RLSRIQPDCLTLISLASILSQLGDIR 365

Query: 153 QGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             +       ++G  + D+ I N+++  YA  G +D A  VF+ +    ++SWN +I  +
Sbjct: 366 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGY 425

Query: 212 VQFGEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
            Q G    A++++  M+   E   +  T+ S+  AC+    L  GM  H  +L++    L
Sbjct: 426 AQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN---GL 482

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             DV V  SL DMY KCG L+ A  +F  +P+ +   WN++I     HG  E A+  F  
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++ +E   P+ ITFV +LSAC+H G+V EG+  F++M  +Y ITP L+HYGC+VD+  RA
Sbjct: 543 ML-DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G ++ AL  + +M ++PDA IW +LL AC + H +V L +  ++ + E E     G +VL
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSAC-RVHGNVDLGKIASEHLFEVEPEHV-GYHVL 659

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS +YASA +W  V  +R +   KG+ K PG SS+E+D     F+ G+ +HP  +++Y  
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 719

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L  +  KLK  GY PD+ +  + D  DD K+  L  HSERLAIA  ++       IR+FK
Sbjct: 720 LTALQAKLKMIGYVPDH-RFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFK 778

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH VTK IS+I   EIIVRD  RFHHFK+G CSC DYW
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 208/424 (49%), Gaps = 40/424 (9%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           ++ +  S L  C+++    +IH  AL+         + + + +IH ++ +  +  A  +F
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWD---VYVAASLIHLYSRYKAVGNARILF 208

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   +  +WN +I    +S +AK +A+ L       G    D  T    L AC     
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAK-EALTL-----SNGLRAMDSVTVVSLLSACTEAGD 262

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
           F++G   H++  K GL S+++++N LI  YA  G L    KVFD M  R L+SWN +I A
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKA 322

Query: 211 FVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +    +   A+ LF+ M++   +PD  T  S+ S  + L  +        + LR      
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLR--KGWF 380

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           + D+ + N+++ MY K G +D AR VF  +P  D+ SWN+II G+A +G A  A++ ++ 
Sbjct: 381 LEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNI 440

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRD----------YFDVMINEYNITPVLEHY 379
           +  E   + N  T+V VL AC+  G + +G            Y DV +    +T + + Y
Sbjct: 441 MEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFV----VTSLADMY 496

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA----SVVLSEEVAKQV 435
           G       + G +++AL L   +P + ++V W +L+ AC   H     +V+L +E+  + 
Sbjct: 497 G-------KCGRLEDALSLFYQIP-RVNSVPWNTLI-ACHGFHGHGEKAVMLFKEMLDEG 547

Query: 436 IESE 439
           ++ +
Sbjct: 548 VKPD 551



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 193/411 (46%), Gaps = 24/411 (5%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTW 101
           C ++   K +HA   R  + +Q + + I +++++ +    ++  A   F  I+N + + W
Sbjct: 64  CTNLQSAKCLHA---RLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAW 120

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N +I    R+ ++  + I  F   +    + PD  TFP  LKAC  +     G + H   
Sbjct: 121 NLMISGYGRAGNSS-EVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLA 176

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K G + DVY+  SLIH Y+    +  A  +FD M  R + SWN MI  + Q G    AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236

Query: 222 KLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
            L   ++ +   D  T  S+ SAC      + G+  H+Y ++   H L +++ V+N LID
Sbjct: 237 TLSNGLRAM---DSVTVVSLLSACTEAGDFNRGVTIHSYSIK---HGLESELFVSNKLID 290

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           +Y + G L   ++VF+ M  RDL SWNSII  + L+ +   A+  F  + +     P+ +
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR-IQPDCL 349

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T + + S  +  G +   R      + +      +     +V + A+ G +D A  + + 
Sbjct: 350 TLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNW 409

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAK--QVIESEGGICS--GVYV 448
           +P   D + W +++      +A    + E  +   ++E EG I +  G +V
Sbjct: 410 LP-NTDVISWNTIISG----YAQNGFASEAIEMYNIMEEEGEIAANQGTWV 455



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 23/277 (8%)

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
           Y       K  HA +     + +V I+  L++ Y   G++ LA   FD++  R + +WN+
Sbjct: 63  YCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNL 122

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           MI  + + G     ++ F    +     PD  TF S+  AC    T+  G   H   L+ 
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALK- 178

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                + DV V  SLI +Y +  ++  AR +F+ MP RD+ SWN++I G+   G A+ AL
Sbjct: 179 --FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YG 380
              + L      + +S+T V +LSAC   G  + G     V I+ Y+I   LE       
Sbjct: 237 TLSNGLR-----AMDSVTVVSLLSACTEAGDFNRG-----VTIHSYSIKHGLESELFVSN 286

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            L+DL A  G + +   +   M ++ D + W S++ A
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKA 322


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/566 (38%), Positives = 317/566 (56%), Gaps = 20/566 (3%)

Query: 55  QALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           QA R       K    ++ ++H +  F  +D A ++F Q+   N  +W T+I  C    +
Sbjct: 146 QAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMI--CGLDQN 203

Query: 114 AKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
            +  +A+ LF+ M+ +  +      F   + ACA   AF  G Q H  I K G + + Y+
Sbjct: 204 ERSGEALDLFKNML-RCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYV 262

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---QI 229
           + SLI FYA+C  +  + KVFD  +   +  W  ++  +    + + AL +F  M    I
Sbjct: 263 SASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSI 322

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
           L  P+  TF S  ++C+ L TL  G   H   ++     L TD  V NSL+ MY   G++
Sbjct: 323 L--PNQSTFASGLNSCSALGTLDWGKEMHGVAVKL---GLETDAFVGNSLVVMYSDSGNV 377

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + A  VF  + K+ + SWNSII+G A HGR + A   F +++   +  P+ ITF G+LSA
Sbjct: 378 NDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMI-RLNKEPDEITFTGLLSA 436

Query: 350 CNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           C+H G + +GR  F  M +  N I   ++HY C+VD+L R G + EA  L+  M +KP+ 
Sbjct: 437 CSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNE 496

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
           ++W +LL AC + H+ V   E+ A  +   +    S  YVLLS +YASA RW++V  +R 
Sbjct: 497 MVWLALLSAC-RMHSDVDRGEKAAAAIFNLDSK-SSAAYVLLSNIYASAGRWSNVSKLRV 554

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
            M   G+ K+PG S + I G  HEFF+GD   P   +IY  L+ + EKLK  GY PDY +
Sbjct: 555 KMKKNGIMKKPGSSWVVIRGKKHEFFSGD--QPHCSRIYEKLEFLREKLKELGYAPDY-R 611

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
           +A+ D  D+ K+  L  HSERLAIA G++N   G  + V KNLRVC+DCH V KLIS + 
Sbjct: 612 SALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVV 671

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
             EI++RD  RFHHFK+G+CSC DYW
Sbjct: 672 GREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 133/324 (41%), Gaps = 69/324 (21%)

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS---------------- 203
           ++F    V DV   NS+I     CG ++ A K+FD M ERS+VS                
Sbjct: 87  NLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQ 146

Query: 204 ---------------WNVMIDAFVQFGEFDSALKLFRRM--------------------- 227
                          WN M+  ++QFG+ D ALKLF++M                     
Sbjct: 147 AERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERS 206

Query: 228 -----------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
                      +   +     F  + +ACA      +G+  H  I++      + +  V+
Sbjct: 207 GEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIK---LGFLYEEYVS 263

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            SLI  Y  C  +  +R+VF+      +  W +++ G++L+ + E AL  F  + +  S 
Sbjct: 264 ASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGM-LRNSI 322

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            PN  TF   L++C+  G +  G++   V +     T        LV + + +GN+++A+
Sbjct: 323 LPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVG-NSLVVMYSDSGNVNDAV 381

Query: 397 HLVSNMPMKPDAVIWRSLLDACCK 420
            +   +  K   V W S++  C +
Sbjct: 382 SVFIKI-FKKSIVSWNSIIVGCAQ 404



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 16/144 (11%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           +VL+ N L+        +D AR+VF  +P   ++ +  +I G+    R   AL  FD + 
Sbjct: 39  EVLICNHLLSR-----RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMP 93

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
           V +  S NS+     +S C   G ++     FD M     ++      GC      R+G 
Sbjct: 94  VRDVVSWNSM-----ISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCF-----RSGK 143

Query: 392 IDEALHLVSNMPMKPDAVIWRSLL 415
           +D+A  L   MP+K D   W S++
Sbjct: 144 VDQAERLFYQMPVK-DTAAWNSMV 166



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 15/139 (10%)

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           +I  Y +   L  A  +F+ MP RD+ SWNS+I G    G    A+K FD     E    
Sbjct: 72  MITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFD-----EMPER 126

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH--YGCLVDLLARAGNIDEAL 396
           + +++  +++ C   G V +    F  M       PV +   +  +V    + G +D+AL
Sbjct: 127 SVVSWTAMVNGCFRSGKVDQAERLFYQM-------PVKDTAAWNSMVHGYLQFGKVDDAL 179

Query: 397 HLVSNMPMKPDAVIWRSLL 415
            L   MP K + + W +++
Sbjct: 180 KLFKQMPGK-NVISWTTMI 197


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 304/534 (56%), Gaps = 55/534 (10%)

Query: 102 NTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK----Q 156
           N LIRA A S  A+P  A+ L+  ++  G+  P  HT P  LK+ A   A    +     
Sbjct: 175 NALIRALAGS--ARPHLALPLYAHLLRAGH-HPTPHTLPSLLKSLALSPAVPGARGLALA 231

Query: 157 AHAHIFKRGLVSDVYINNSLIHF--------------------------------YASCG 184
            HAH  K GL   + ++N+LI                                  YA  G
Sbjct: 232 VHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAG 291

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITS 243
            +  A  +FD M  R+ VSW+ M++ +VQ G+   AL LF RMQ     PD      + +
Sbjct: 292 RVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLA 351

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  L  G W H Y+  +   ++   V +  +L+DMY KCG + +A +VF+ M +++
Sbjct: 352 ACAQLGVLEQGKWVHGYLKAN---NIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408

Query: 304 LTSWNSIILGFALHGRAEAALKYF---DRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + +W ++I G A+HGR   AL+ F   +RL V+    P+ I F+G L AC H G+V +GR
Sbjct: 409 VLAWTTMIKGLAMHGRGSEALELFSQMERLGVK----PDDIAFIGALCACTHTGLVDKGR 464

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           + FD M+ +Y I P +EHYGC+VDLLAR G ++EA  +V  MPMKPDA+IW +L+ A C+
Sbjct: 465 ELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALM-AGCR 523

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H +V L+E V K  IE E    SG YVLL  +YA++ R      +R LM +KGV K PG
Sbjct: 524 FHKNVELAEYVVKHWIELEPDK-SGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPG 582

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK-SRGYTPDYSQAAMVDELDDGK 539
           CS++EI G+ H+F  GD SHP  ++I    D ID +++   GY PD  +  ++D  ++ K
Sbjct: 583 CSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKE-VLLDIEEEEK 641

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
           +++L  HSE++AIA  ++N    MPIR+ KNLRVC DCH VTKLIS++F++ ++
Sbjct: 642 ENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 131/334 (39%), Gaps = 47/334 (14%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ-------IHAQALRTALPQQHKTLLIY 71
            +F   + +G   + + L+  L  C  +  L+Q       + A  +R  +       L  
Sbjct: 329 GLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITV------FLGT 382

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           + +  +A   ++  A  VF  ++  N   W T+I+  A       +A+ LF +M E+  V
Sbjct: 383 ALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGS-EALELFSQM-ERLGV 440

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
            PD   F  AL AC +     +G++   + + K G+   +     ++   A  G L+ A 
Sbjct: 441 KPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAR 500

Query: 191 KVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA 249
           ++ + M ++   + W  ++ A  +F +     +   +  I  EPD    +S      G  
Sbjct: 501 EMVEKMPMKPDALIWGALM-AGCRFHKNVELAEYVVKHWIELEPD----KSGAYVLLGNI 555

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
             + G  A A  +RH         L+    +D    C +++I   + +            
Sbjct: 556 YAASGRHASAREIRH---------LMREKGVDKTPGCSTVEIKGVIHQ------------ 594

Query: 310 IILGFALHGRAEAALKYFD----RLVVEESFSPN 339
            I+G   H   E  L  +D    R+ +EE + P+
Sbjct: 595 FIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPD 628


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/606 (36%), Positives = 332/606 (54%), Gaps = 45/606 (7%)

Query: 28  GSFNNHSSLLSSLTECKSMS---------QLKQIH-AQALRTALPQQHKTLLIYSRIIHF 77
           G       L  S TE  ++S         Q  QI  AQ +   +PQ+   +   + +  +
Sbjct: 245 GRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR-DVVSWNTMVSGY 303

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG----NVLP 133
           A   D+  A R+F      + FTW  ++   A++             M+E+     + +P
Sbjct: 304 ARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNG------------MLEEAKRVFDAMP 351

Query: 134 DKHTFPFALKACAYLFAFSQGK--QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           DK+    A+   A + A+ Q +  +    +F      +V   N+++  YA  G LD A  
Sbjct: 352 DKN----AVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARA 407

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLAT 250
           +F  M ++  VSW  M+ A+ Q G  +  L+LF+ M    E  +   F  + S CA +A 
Sbjct: 408 IFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAA 467

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  GM  H+ +++           V N+L+ MY KCGS++ A   FE M +RD+ SWN++
Sbjct: 468 LECGMQLHSRLIKA---GYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTM 524

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+A HG  + AL+ FD +  + S  P+ IT VGVL+AC+H G+V +G  YF  M  ++
Sbjct: 525 IAGYARHGFGKEALEVFDTMR-KTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDF 583

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            +    EHY C++DLL RAG +DEA++L+ +MP +PD+ +W +LL A  + H +  L   
Sbjct: 584 GVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGAS-RIHRNSELGRN 642

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            A+++ E E    +G+YVLLS +YAS+ +W DV  +R +M ++GV K PG S IE+    
Sbjct: 643 AAEKIFELEPE-NAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKV 701

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMV--DELDDGKQSSLRLHSE 548
           H F  GD+ HP+ + IY FL+ +D ++K  GY    S   MV  D  ++ K+  L+ HSE
Sbjct: 702 HTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYV---SATDMVLHDVEEEEKEHMLKYHSE 758

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LA+A GIL + PG PIRV KNLRVC+DCH   K IS I    II+RD  RFHHF+DGSC
Sbjct: 759 KLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSC 818

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 819 SCGDYW 824



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 163/378 (43%), Gaps = 67/378 (17%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           A+ L  A+P++  T    + +  +A+   L  A   F  I  P+SF++NTL+ A   S  
Sbjct: 126 AERLFAAMPRR-STSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVS-S 183

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
           +      LF  M  + +V    +    +  A   L + ++      H F      D    
Sbjct: 184 SLADVRALFDEMPVKDSV---SYNVMISSHANHGLVSLAR------HYFDLAPEKDAVSW 234

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           N ++  Y   G +  A ++FD+  E   +SWN ++  +VQ  + + A K+F +M      
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMP----- 289

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
                                                 DV+  N+++  Y + G +  AR
Sbjct: 290 ------------------------------------QRDVVSWNTMVSGYARRGDMAEAR 313

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F+  P RD+ +W +I+ G+A +G  E A + FD +        N++++  +++A   R
Sbjct: 314 RLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP-----DKNAVSWNAMMAAYVQR 368

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
            M+ E ++ FD M    N+      +  ++   A+AG +DEA  +   MP K DAV W +
Sbjct: 369 RMMEEAKELFDAMPCR-NVA----SWNTMLTGYAQAGMLDEARAIFGMMPQK-DAVSWAA 422

Query: 414 LLDACCKKHASVVLSEEV 431
           +L A    ++ +  SEE 
Sbjct: 423 MLAA----YSQIGFSEET 436



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 42/279 (15%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           +V   N  I  +   G +  A ++F  M  RS  ++N M+  +   G    AL  FR + 
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 229 ILFEPDGYTFQS------ITSACAGLATLSLGMWA------HAYILRHCDHSLVT----- 271
               PD +++ +      ++S+ A +  L   M        +  I  H +H LV+     
Sbjct: 166 ---RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 222

Query: 272 -------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                  D +  N ++  Y + G +  AR++F+S  + D  SWN+++ G+    + E A 
Sbjct: 223 FDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQ 282

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE--HYGCL 382
           K F+++   +  S N++     +S    RG ++E R  FDV        P+ +   +  +
Sbjct: 283 KMFNKMPQRDVVSWNTM-----VSGYARRGDMAEARRLFDV-------APIRDVFTWTAI 330

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           V   A+ G ++EA  +   MP K +AV W +++ A  ++
Sbjct: 331 VSGYAQNGMLEEAKRVFDAMPDK-NAVSWNAMMAAYVQR 368


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 313/571 (54%), Gaps = 45/571 (7%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRA-CARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           F   D A  +F Q+ +P+  +WN++I   C +  D +  A+  F  M++  ++ PDK T 
Sbjct: 224 FCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIR--ALETFSFMLKSSSLKPDKFTL 281

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV------ 192
              L ACA   +   GKQ HAHI +  +     + N+LI  YA  G +++A+++      
Sbjct: 282 GSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGT 341

Query: 193 ---------------------------FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
                                      FD++  R +V+W  MI  + Q G    AL LFR
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFR 401

Query: 226 RM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            M +   +P+ YT  ++ S  + LA+L  G   HA  +R  +   V+ V V N+LI MY 
Sbjct: 402 LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEE---VSSVSVGNALITMYS 458

Query: 285 KCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
           + GS+  AR++F  +   RD  +W S+IL  A HG    A++ F++++   +  P+ IT+
Sbjct: 459 RSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKML-RINLKPDHITY 517

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           VGVLSAC H G+V +G+ YF++M N +NI P   HY C++DLL RAG ++EA + + NMP
Sbjct: 518 VGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMP 577

Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
           ++PD V W SLL + C+ H  V L++  A++++  +    SG Y+ L+   ++  +W D 
Sbjct: 578 IEPDVVAWGSLLSS-CRVHKYVDLAKVAAEKLLLIDPN-NSGAYLALANTLSACGKWEDA 635

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VRK M DK V KE G S ++I    H F   D  HPQ   IY  +  I +++K  G+ 
Sbjct: 636 AKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFI 695

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD + + + D   + K+  LR HSE+LAIA  ++N      +R+ KNLRVC DCH   + 
Sbjct: 696 PD-TNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRY 754

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS +   EIIVRD  RFHHFKDGSCSC DYW
Sbjct: 755 ISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 183/401 (45%), Gaps = 67/401 (16%)

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A   +LD A RVF +I  P+S +W T+I      +     A+  F RM+  G + P + T
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVG-YNHLGLFKSAVHAFLRMVSSG-ISPTQFT 147

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F   L +CA   A   GK+ H+ + K G    V + NSL++ YA CG   +A  VFD M 
Sbjct: 148 FTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMR 207

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRM---------QIL------------------ 230
            +   +WN MI   +QF +FD AL LF +M          I+                  
Sbjct: 208 LKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSF 267

Query: 231 ------FEPDGYTFQSITSACAGLATLSLGMWAHAYILR--------------------- 263
                  +PD +T  S+ SACA   +L LG   HA+I+R                     
Sbjct: 268 MLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327

Query: 264 --HCDHSLVT-------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
                H +V        +V+   SL+D Y K G +D AR +F+S+  RD+ +W ++I+G+
Sbjct: 328 AVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGY 387

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A +G    AL  F RL++ E   PN+ T   VLS  +    +  G+    V I    ++ 
Sbjct: 388 AQNGLISDALVLF-RLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSS 446

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V      L+ + +R+G+I +A  + +++    D + W S++
Sbjct: 447 V-SVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 142/334 (42%), Gaps = 73/334 (21%)

Query: 154 GKQAHAHIFKRGL-VSDVYINNSLIHFY-------------------------------A 181
           G+  HA I K GL    V++ N+L++ Y                               A
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
             G+LD A +VFD + +   VSW  MI  +   G F SA+  F RM      P  +TF +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG------------- 287
           + ++CA    L +G   H+++++     +V    V NSL++MY KCG             
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVP---VANSLLNMYAKCGDSVMAKVVFDRMR 207

Query: 288 ------------------SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
                               D+A  +F+ M   D+ SWNSII G+   G    AL+ F  
Sbjct: 208 LKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSF 267

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLAR 388
           ++   S  P+  T   VLSAC +R  +  G+  +  ++  + +I   + +   L+ + A+
Sbjct: 268 MLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN--ALISMYAK 325

Query: 389 AGNIDEALHLVSNMPMKP--DAVIWRSLLDACCK 420
           +G + E  H +  +   P  + + + SLLD   K
Sbjct: 326 SGAV-EVAHRIVEITGTPSLNVIAFTSLLDGYFK 358



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 39/351 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRT--------------------ALPQQHKTLLIYS-- 72
           S+LS+    +S+   KQIHA  +R                     A+   H+ + I    
Sbjct: 283 SVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTP 342

Query: 73  --RIIHFASF-------ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
              +I F S         D+D A  +F  +++ +   W  +I   A++      A+VLF+
Sbjct: 343 SLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN-GLISDALVLFR 401

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
            MI +G   P+ +T    L   + L +   GKQ HA   +   VS V + N+LI  Y+  
Sbjct: 402 LMIREGPK-PNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRS 460

Query: 184 GHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSI 241
           G +  A K+F+++   R  ++W  MI +  Q G  + A++LF +M +I  +PD  T+  +
Sbjct: 461 GSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGV 520

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP- 300
            SAC  +  +  G     + L    H++         +ID+  + G L+ A     +MP 
Sbjct: 521 LSACTHVGLVEQG--KSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPI 578

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDR-LVVEESFSPNSITFVGVLSAC 350
           + D+ +W S++    +H   + A    ++ L+++ + S   +     LSAC
Sbjct: 579 EPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSAC 629



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 43/229 (18%)

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS------------------------ 288
           +G   HA I++H    L   V + N+L+++Y K GS                        
Sbjct: 30  IGRCIHARIIKHGLRYL--GVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILS 87

Query: 289 -------LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
                  LD AR+VF+ +P+ D  SW ++I+G+   G  ++A+  F R+ V    SP   
Sbjct: 88  AHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRM-VSSGISPTQF 146

Query: 342 TFVGVLSACNHRGMVSEGRDY--FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
           TF  VL++C     +  G+    F V + +  + PV      L+++ A+ G+   A  + 
Sbjct: 147 TFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN---SLLNMYAKCGDSVMAKVVF 203

Query: 400 SNMPMKPDAVIWRSLLD---ACCKKHASVVLSEEVAKQVIESEGGICSG 445
             M +K D   W +++      C+   ++ L +++    I S   I +G
Sbjct: 204 DRMRLK-DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITG 251



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 39/218 (17%)

Query: 31  NNHS--SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           NN++  ++LS ++   S+   KQ+HA A+R  L +     +  + I  ++    +  A +
Sbjct: 411 NNYTLAAVLSVISSLASLDHGKQLHAVAIR--LEEVSSVSVGNALITMYSRSGSIKDARK 468

Query: 89  VFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +F  I    ++ TW ++I + A+      +AI LF++M+ + N+ PD  T+   L AC +
Sbjct: 469 IFNHICSYRDTLTWTSMILSLAQH-GLGNEAIELFEKML-RINLKPDHITYVGVLSACTH 526

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           +    QGK                             + +L   V +  +E +   +  M
Sbjct: 527 VGLVEQGKS----------------------------YFNLMKNVHN--IEPTSSHYACM 556

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
           ID   + G  + A    R M I  EPD   + S+ S+C
Sbjct: 557 IDLLGRAGLLEEAYNFIRNMPI--EPDVVAWGSLLSSC 592


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 325/587 (55%), Gaps = 33/587 (5%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR--------V 89
           SSL E  S+S  KQ+H  A++           I +    F S A +D   R        +
Sbjct: 427 SSLPEGLSLS--KQVHVHAIK-----------INNVSDSFVSTALIDAYSRNRCMKEAEI 473

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
            ++  N +   WN ++    +S D   + + LF  M +QG    D  T     K C +LF
Sbjct: 474 LFERHNFDLVAWNAMMAGYTQSHDGH-KTLKLFALMHKQGE-RSDDFTLATVFKTCGFLF 531

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
           A +QGKQ HA+  K G   D+++++ ++  Y  CG +  A   FD++     V+W  MI 
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS 591

Query: 210 AFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDH 267
             ++ GE + A  +F +M+++   PD +T  ++  A + L  L  G   HA  L+ +C  
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNC-- 649

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
               D  V  SL+DMY KCGS+D A  +F+ +   ++T+WN++++G A HG  +  L+ F
Sbjct: 650 --TNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLF 707

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            ++       P+ +TF+GVLSAC+H G+VSE   +   M  +Y I P +EHY CL D L 
Sbjct: 708 KQMK-SLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALG 766

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG + +A +L+ +M M+  A ++R+LL A C+        + VA +++E E  + S  Y
Sbjct: 767 RAGLVKQAENLIESMSMEASASMYRTLL-AACRVQGDTETGKRVATKLLELEP-LDSSAY 824

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           VLLS +YA+A +W+++ L R +M    V K+PG S IE+    H F   D S+ QT+ IY
Sbjct: 825 VLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIY 884

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
             +  +   +K  GY P+ +   +VD  ++ K+ +L  HSE+LA+A G+L+  P  PIRV
Sbjct: 885 RKVKDMIRDIKQEGYVPE-TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRV 943

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCH   K I++++N EI++RD  RFH FKDG CSC DYW
Sbjct: 944 IKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           F  M+E  +V  D+ TF   L     + + + G+Q H    K GL   + ++NSLI+ Y 
Sbjct: 303 FADMVES-DVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYC 361

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTF 238
                  A  VFDNM ER L+SWN +I    Q G    A+ LF  MQ+L    +PD YT 
Sbjct: 362 KLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF--MQLLRCGLKPDQYTM 419

Query: 239 QSITSACAGLAT-LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
            S+  A + L   LSL    H + ++  +   V+D  V+ +LID Y +   +  A  +FE
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINN---VSDSFVSTALIDAYSRNRCMKEAEILFE 476

Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
                DL +WN+++ G+         LK F  L+ ++    +  T   V   C     ++
Sbjct: 477 R-HNFDLVAWNAMMAGYTQSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAIN 534

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +G+      I       +    G L D+  + G++  A     ++P+ PD V W +++  
Sbjct: 535 QGKQVHAYAIKSGYDLDLWVSSGIL-DMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISG 592

Query: 418 C 418
           C
Sbjct: 593 C 593



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 16/199 (8%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK  HA I       + ++ N+LI  Y+ CG L  A +VFD M +R LVSWN ++ A+ Q
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 214 FGE-----FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWA----HAYILRH 264
             E        A  LFR   IL +   YT +   S    L   S  +WA    H Y    
Sbjct: 118 SSECVVENIQQAFLLFR---ILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA--- 171

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
           C   L  D  V  +L+++Y K G +   + +FE MP RD+  WN ++  +   G  E A+
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231

Query: 325 KYFDRLVVEESFSPNSITF 343
                       +PN IT 
Sbjct: 232 D-LSSAFHSSGLNPNEITL 249



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 24/192 (12%)

Query: 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
           G+   +ITS+      L LG   HA IL   ++      L+NN LI MY KCGSL  AR+
Sbjct: 44  GFLRNAITSS-----DLMLGKCTHARILTFEENP--ERFLINN-LISMYSKCGSLTYARR 95

Query: 295 VFESMPKRDLTSWNSIILGFALHGRA-----EAALKYFDRLVVEESFSPNSITFVGVLSA 349
           VF+ MP RDL SWNSI+  +A          + A   F R++ ++    + +T   +L  
Sbjct: 96  VFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLF-RILRQDVVYTSRMTLSPMLKL 154

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAGNIDEALHLVSNMPMK 405
           C H G V     +     + Y     L+      G LV++  + G + E   L   MP +
Sbjct: 155 CLHSGYVWASESF-----HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR 209

Query: 406 PDAVIWRSLLDA 417
            D V+W  +L A
Sbjct: 210 -DVVLWNLMLKA 220



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 7/178 (3%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K  HA+ L     +  +  LI + I  ++    L YA RVF ++ + +  +WN+++ A A
Sbjct: 59  KCTHARIL--TFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116

Query: 110 RS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           +S    V+   QA +LF R++ Q  V   + T    LK C +       +  H +  K G
Sbjct: 117 QSSECVVENIQQAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIG 175

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
           L  D ++  +L++ Y   G +     +F+ M  R +V WN+M+ A+++ G  + A+ L
Sbjct: 176 LDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/577 (35%), Positives = 304/577 (52%), Gaps = 45/577 (7%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           ++ +    D++ A  VF +++      WN +I    +S      A  LF+RM+ +  V  
Sbjct: 241 VVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQS-GMCADAFELFRRMVSE-KVPL 298

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFK--RGLVSD--VYINNSLIHFYASCGHLDLA 189
           D+ TF   L ACA    F  GK  H  I +     V +  + +NN+L+  Y+  G + +A
Sbjct: 299 DEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIA 358

Query: 190 NKVFDNMLERSLVSWN-------------------------------VMIDAFVQFGEFD 218
            ++FD M  + +VSWN                               VM+  +V  G  +
Sbjct: 359 KRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSE 418

Query: 219 SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            ALKLF +M+    +P  YT+    +AC  L  L  G   HA++++ C           N
Sbjct: 419 DALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNSA--GN 475

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+ MY KCG+++ AR VF  MP  D  SWN++I     HG    AL+ FD++V E    
Sbjct: 476 ALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAE-GID 534

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P+ I+F+ +L+ACNH G+V EG  YF+ M  ++ I+P  +HY  L+DLL R+G I EA  
Sbjct: 535 PDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARD 594

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           L+  MP +P   IW ++L  C + +  +      A Q+         G Y+LLS  Y++A
Sbjct: 595 LIKTMPFEPTPSIWEAILSGC-RTNGDMEFGAYAADQLFRMIPQ-HDGTYILLSNTYSAA 652

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            RW D   VRKLM D+GV KEPGCS IE+    H F  GDT HP+ +++Y FL++I  ++
Sbjct: 653 GRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARM 712

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           +  GY PD ++  + D     K+  L  HSE+LA+  G+L L PG  + V KNLR+C DC
Sbjct: 713 RKLGYVPD-TKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDC 771

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H     +S+    EI+VRD  RFHHFKDG CSC +YW
Sbjct: 772 HTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 127/311 (40%), Gaps = 46/311 (14%)

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSW 204
           +L+  S      A +F+           SL+  +A+ G L  A   FD +    R  V  
Sbjct: 71  HLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLH 130

Query: 205 NVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLG--MWAHAY 260
           N M+ AF +      A+ +F  +       PD Y+F ++ SA   +  L+       H  
Sbjct: 131 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 190

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI---ARQVFESMPKRDLTSWNSIILGFALH 317
           +L+    ++++   V+N+LI +Y KC + +    AR+V + MP +D  +W ++++G+   
Sbjct: 191 VLKSGAAAVLS---VSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRR 247

Query: 318 GRAEAALKYFD------------------------------RLVVEESFSPNSITFVGVL 347
           G   AA   F+                              R +V E    +  TF  VL
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 348 SACNHRGMVSEGRDYFDVMIN-EYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           SAC + G    G+     +I  + N  P   L     LV L ++ G I  A  +   M +
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 405 KPDAVIWRSLL 415
           K D V W ++L
Sbjct: 368 K-DVVSWNTIL 377


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/651 (34%), Positives = 336/651 (51%), Gaps = 87/651 (13%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L  +L +   +  LK++H       L       L    +  +A+  +     +VF ++ +
Sbjct: 24  LAKALDQNPDIKTLKKLHTMIF--YLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSD 81

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N   +N +IR+   +       +++F+ M+  G   PD +T+P  LKAC+       G 
Sbjct: 82  RNVVFYNVMIRSYVNN-HRYDDGLLVFREMV-NGGFRPDNYTYPCVLKACSCSENLRYGL 139

Query: 156 QAHAHIFK----------RGLVS---------------------DVYINNSLIHFYASCG 184
             H  + K           GL++                     DV   NS++  YA   
Sbjct: 140 LIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNM 199

Query: 185 HLDLA-------------------------------------NKVFDNMLERSLVSWNVM 207
             D A                                      K+F N+  ++L+SWNVM
Sbjct: 200 RFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVM 259

Query: 208 IDAFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  +++      A+ L+ +M+    EPD  TF S+  AC  L+ L LG   H Y+ +   
Sbjct: 260 IRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKK-- 317

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             L  ++L+ NSLIDMY +CG LD A++VF+ M  RD+ SW S+I  + + G+   A+  
Sbjct: 318 -KLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVAL 376

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  ++     +P+SI FV +LSAC+H G++ EGR YF  M ++Y ITP +EHY CLVDLL
Sbjct: 377 FTEML-NSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLL 435

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC---CKKHASVVLSEEVAKQVIESEGGIC 443
            RAG +DEA +++  MP++P+  +W +LL +C         ++ ++ + +   E      
Sbjct: 436 GRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQ----- 490

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           SG YVLLS +YA A RW +V  +R +M  K + K PG S++E++   H F AGDTSHPQ+
Sbjct: 491 SGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQS 550

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
           K+IY  L ++  K+K  GY P+ + +A+ D  ++ K+  L +HSE+LAI   +LN +   
Sbjct: 551 KEIYEELGVLVAKMKELGYVPE-TDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-Y 608

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IR+ KNLRVC DCH   KLIS+I   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 609 QIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 326/580 (56%), Gaps = 17/580 (2%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN-PNSFTW 101
           C  +  +KQ+H  A+             +  + +++    L  A  VFY ++   +  +W
Sbjct: 151 CDRVDLIKQLHCFAVSGGFDSYSSVNNAF--VTYYSKGGLLREAVSVFYGMDGLRDEVSW 208

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N++I A  +  +   +A+ L++ MI +G  + D  T    L A   L     G+Q H  +
Sbjct: 209 NSMIVAYGQHKEG-AKALALYKEMIFKGFKI-DMFTLASVLNALTSLDHLIGGRQFHGKL 266

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDL---ANKVFDNMLERSLVSWNVMIDAFVQFGEF- 217
            K G   + ++ + LI FY+ CG  D    + KVF  +L   LV WN MI  +    E  
Sbjct: 267 IKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHS 326

Query: 218 DSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           + A+K FR+MQ I   PD  +F  +TSAC+ L++ S G   H   ++    S    + VN
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPS--NRISVN 384

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N+LI +Y K G+L  AR+VF+ MP+ +  S+N +I G+A HG    AL+ + R++ +   
Sbjct: 385 NALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRML-DSGI 443

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
           +PN+ITFV +LSAC H G V EG+ YF+ M   + I P  EHY C++DLL RAG ++EA 
Sbjct: 444 APNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAE 503

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             +  MP KP +V W +LL A C+KH ++ L+E  AK+++  +  + +  YV+L+ +YA 
Sbjct: 504 RFIDAMPYKPGSVAWAALLGA-CRKHKNMALAERAAKELMVMQ-PLAATPYVMLANMYAD 561

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A +W ++  VRK M  K + K+PGCS IE+    H F A D SHP  +++  +L+ + +K
Sbjct: 562 AGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKK 621

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRL--HSERLAIALGILNLKPGMPIRVFKNLRVC 574
           +K  GY  D   A + ++     +  +RL  HSE+LA+A G+++ + G  I V KNLR+C
Sbjct: 622 MKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRIC 681

Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            DCH   K +S +   EIIVRD  RFH FKDG CSC DYW
Sbjct: 682 GDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 180/416 (43%), Gaps = 45/416 (10%)

Query: 24  NRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           N+ +  F +   LL      + +   K +HA  +++ +     T L    +  ++    L
Sbjct: 2   NQTQWKFKSFRDLLLKSVAERDLFTGKSLHALYVKSIVASS--TYLSNHFVNLYSKCGCL 59

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARS---------VDAKPQ----------------- 117
            YA   F   E PN F++N +++A A+           D  PQ                 
Sbjct: 60  SYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADAR 119

Query: 118 ----AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
               A+VLF+RM E G  + D  T    + AC         KQ H      G  S   +N
Sbjct: 120 ETVAAMVLFKRMRELGFEV-DGFTLSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVN 176

Query: 174 NSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
           N+ + +Y+  G L  A  VF  M   R  VSWN MI A+ Q  E   AL L++ M    F
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD- 290
           + D +T  S+ +A   L  L  G   H  +++   H    +  V + LID Y KCG  D 
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQ---NSHVGSGLIDFYSKCGGRDG 293

Query: 291 --IARQVFESMPKRDLTSWNSIILGFALHGR-AEAALKYFDRLVVEESFSPNSITFVGVL 347
              + +VF+ +   DL  WN++I G++++   +E A+K F R +      P+  +FV V 
Sbjct: 294 MSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSF-RQMQRIGHRPDDCSFVCVT 352

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           SAC++    S+G+    + I     +  +     L+ L  ++GN+ +A  +   MP
Sbjct: 353 SACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 137/321 (42%), Gaps = 51/321 (15%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GK  HA   K  + S  Y++N  ++ Y+ CG L  A   FD+  E ++ S+NV++ A+ +
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86

Query: 214 FGE-------FD------------------------SALKLFRRMQIL-FEPDGYTFQSI 241
             +       FD                        +A+ LF+RM+ L FE DG+T   +
Sbjct: 87  DSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGL 146

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            +AC     L   +  H + +     S  +   VNN+ +  Y K G L  A  VF  M  
Sbjct: 147 IAACCDRVDLIKQL--HCFAVSGGFDSYSS---VNNAFVTYYSKGGLLREAVSVFYGMDG 201

Query: 302 -RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            RD  SWNS+I+ +  H     AL  +  ++  + F  +  T   VL+A      +  GR
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIF-KGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 361 DYFDVMINEYNITPVLEHYGC-LVDLLARAGNID--EALHLVSNMPMKPDAVIWRSLLDA 417
            +   +I          H G  L+D  ++ G  D       V    + PD V+W +++  
Sbjct: 261 QFHGKLIKAGFHQN--SHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMI-- 316

Query: 418 CCKKHASVVLSEEVAKQVIES 438
                +   ++EE +++ ++S
Sbjct: 317 -----SGYSMNEEHSEEAVKS 332


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 340/594 (57%), Gaps = 26/594 (4%)

Query: 32  NHSSLLSSLTECKSMSQLK---QIHAQALRTALP--QQHKTLLI--YSRIIHFASFADLD 84
           N     ++L+ C    ++K   Q H    +  L   Q  K+ L+  YSR  H      ++
Sbjct: 116 NEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSH------VE 169

Query: 85  YAFRVFYQI--ENPNS-FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            A +V   +  E+ N  F++N+++ A   S   + +A+ + +RM+++  V  D  T+   
Sbjct: 170 LALQVLDTVPGEHVNDIFSYNSVLNALVESGRGE-EAVEVLRRMVDEC-VAWDHVTYVGV 227

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           +  CA +     G + HA + + GL+ D ++ + LI  Y  CG +  A  VFD +  R++
Sbjct: 228 MGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNV 287

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAY 260
           V W  ++ A++Q G F+ +L LF  M      P+ YTF  + +ACAG+A L  G   HA 
Sbjct: 288 VVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHAR 347

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           + +         V+V N+LI+MY K GS+D +  VF  M  RD+ +WN++I G++ HG  
Sbjct: 348 VEKL---GFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLG 404

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           + AL+ F  +V  E   PN +TF+GVLSA +H G+V EG  Y + ++  + I P LEHY 
Sbjct: 405 KQALQVFQDMVSAEE-CPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYT 463

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+V LL+RAG +DEA + +    +K D V WR+LL+AC   H +  L   +A+ V++ + 
Sbjct: 464 CMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNAC-HVHRNYDLGRRIAESVLQMDP 522

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
               G Y LLS +YA ARRW+ V  +RKLM ++ + KEPG S ++I    H F +  ++H
Sbjct: 523 HDV-GTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNH 581

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           P++ QIY  +  +   +K  GY P+ + + + D  D+ K+  L  HSE+LA+A G++ + 
Sbjct: 582 PESIQIYKKVQQLLALIKPLGYVPNIA-SVLHDVEDEQKEGYLSYHSEKLALAYGLMKIP 640

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              PIR+ KNLR+C DCH   KLIS++ N  IIVRD  RFHHF+DGSC+C+D+W
Sbjct: 641 SPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 185/371 (49%), Gaps = 12/371 (3%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           K +HAQ L       H  +   + ++H +     L  A  +F  +   N  +WN L+   
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
               +   + +VLF+ M+   N  P+++ F  AL AC++     +G Q H  +FK GLV 
Sbjct: 92  LHGGN-HLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVC 150

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFDSALKLFR 225
             Y+ ++L+H Y+ C H++LA +V D +       + S+N +++A V+ G  + A+++ R
Sbjct: 151 HQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLR 210

Query: 226 RM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
           RM       D  T+  +   CA +  L LG+  HA +LR     L+ D  V + LIDMY 
Sbjct: 211 RMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLR---GGLMFDEFVGSMLIDMYG 267

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG +  AR VF+ +  R++  W +++  +  +G  E +L  F  +  E +  PN  TF 
Sbjct: 268 KCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTL-PNEYTFA 326

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +L+AC     +  G D     + +      +     L+++ +++G+ID + ++ ++M  
Sbjct: 327 VLLNACAGIAALRHG-DLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIY 385

Query: 405 KPDAVIWRSLL 415
           + D + W +++
Sbjct: 386 R-DIITWNAMI 395



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 13/194 (6%)

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHA-YILRH--CDHSLVTDVLVNNSLIDMYCKCG 287
           + P       +   CA +  L  G   HA +++R+   +HS ++ +   NSL+ +Y KCG
Sbjct: 8   YLPSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHL---NSLVHLYVKCG 64

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            L +AR +F++MP R++ SWN ++ G+   G     L  F  +V  ++  PN   F   L
Sbjct: 65  QLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTAL 124

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHY--GCLVDLLARAGNIDEALHLVSNMPMK 405
           SAC+H G V EG     ++   +    V   Y    LV + +R  +++ AL ++  +P +
Sbjct: 125 SACSHGGRVKEGMQCHGLL---FKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGE 181

Query: 406 --PDAVIWRSLLDA 417
              D   + S+L+A
Sbjct: 182 HVNDIFSYNSVLNA 195


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/485 (39%), Positives = 292/485 (60%), Gaps = 14/485 (2%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P +  F   +   AY+   ++G+ A A  +F      D+   N++IH YA  G +DLA +
Sbjct: 102 PRRDVFLCNVMLAAYV---TRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLARE 158

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           VF+ M +R   SW+ M+ A+ +      AL+L+R M+     PD  T  S+ SAC+ +  
Sbjct: 159 VFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGA 218

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L++G   H ++     + +  DV +  +LIDMY KCG ++ + +VF SMP +D+ +W+S+
Sbjct: 219 LAVGAEVHQFVE---SNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSM 275

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G A HG    AL  F R++  E   PN +TF+GVL +C H G+VS+G+ YF  M   +
Sbjct: 276 IIGLANHGFGHDALSLFSRML-SEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVH 334

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            +TP ++HYGC+VDLL R+G+I+EA  L+ +MP +PDAVIWR+LL AC       V  E 
Sbjct: 335 GVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEA 394

Query: 431 VAK-QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
           +AK +V++       G YVLLS +YA A  W  V  +R+ +  + + + PG SSIE    
Sbjct: 395 MAKLRVLDPHA---DGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNT 451

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            HEF +GD SHP++K+IY  L  + ++L+  GY P  +   + D  +  K+ +L  HSE+
Sbjct: 452 IHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKP-MTGLVLQDIDEQSKERALAEHSEK 510

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+A G+L    G  +R+ KNLR C+DCH   KLI+ ++  ++I+RDR RFHHF +G CS
Sbjct: 511 LAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCS 570

Query: 610 CMDYW 614
           C DYW
Sbjct: 571 CKDYW 575



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 137/282 (48%), Gaps = 7/282 (2%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+A R     + + ++ ++ +IH +A   ++D A  VF  +++ ++F+W++++ A  +  
Sbjct: 123 AEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGR 182

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
            +K  A+ L++ M     V PD  T    L AC+ + A + G + H  +   G+  DV +
Sbjct: 183 RSK-DALELWREM-RAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKL 240

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILF 231
             +LI  YA CG ++ + +VF +M  + +++W+ MI      G    AL LF RM     
Sbjct: 241 GTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGL 300

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           +P+  TF  +  +C  L  +S G     +      H +   V     ++D+  + G ++ 
Sbjct: 301 QPNEVTFIGVLISCTHLGLVSDG--KKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEE 358

Query: 292 ARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           A+Q+   MP + D   W +++    ++   E A +   +L V
Sbjct: 359 AKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRV 400



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 65/207 (31%)

Query: 271 TDVLVNNSLIDMYCKCGSLDI-------------------------------ARQVFESM 299
            D+ V  +L++ Y K G  D+                               AR+VF+ M
Sbjct: 73  ADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGM 132

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS---------------------- 337
            +RD+ SWN++I G+A++G  + A + F+ +   ++FS                      
Sbjct: 133 RERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWR 192

Query: 338 --------PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-CLVDLLAR 388
                   P+  T V VLSAC+  G ++ G +    +  E N   +    G  L+D+ A+
Sbjct: 193 EMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFV--ESNGVELDVKLGTALIDMYAK 250

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G+I+ ++ +  +MP+K D + W S++
Sbjct: 251 CGDIENSVRVFHSMPVK-DVLTWSSMI 276


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 331/603 (54%), Gaps = 39/603 (6%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           +LS+ +  + +   +Q+H  +++        T +  S    +    DL+   R F    +
Sbjct: 1   MLSACSAARRIDLGQQVHGYSIKYG--ADTITSMGNSLCRLYCKSGDLESGLRAFKGTPD 58

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N  TW T+I +CA   +     + LF  M+E G V+P++ T    +  C      S GK
Sbjct: 59  KNVITWTTMISSCAEDENYLDLGLSLFLDMLE-GGVMPNEFTLTSVMSLCGARLDMSLGK 117

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q  A  +K G  +++ + NS ++ Y   G  D A ++F+ M   S+++WN MI  + Q  
Sbjct: 118 QVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQI- 176

Query: 216 EFDSA-------------LKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
             DSA             LKLFR + +   +PD +TF SI S C+ +  L  G   HA  
Sbjct: 177 -MDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANT 235

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           ++      ++DV+VN++L++MY KCGS++ A + F  MP R   +W S+I G++ HGR++
Sbjct: 236 IKT---GCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQ 292

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A++ F+ +V+  +  PN ITFV +LSAC++ G+V E   YFD+M NEY+I P+++HYGC
Sbjct: 293 DAIQLFEDMVLSGA-RPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGC 351

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           +VD+  R G +D+A   +     +P+  IW SL+ A C+ H ++ L+   A +++E +  
Sbjct: 352 MVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLV-AGCRSHGNMELAFYAADRLLELKPK 410

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMT--DKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
           +    YVLL  +Y S  RW DV  VRKL    D GV ++   S I I    + F A D +
Sbjct: 411 VIE-TYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDR--SWIAIRDKVYFFRADDMT 467

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMV----DELDDGKQSS-----LRLHSERL 550
           HPQ  ++Y  L+ + EK K+ GY P Y  A  +     E DD K ++     ++ HSERL
Sbjct: 468 HPQATELYQLLENLLEKAKAVGYEP-YQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERL 526

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+ALG+L   PG  +RV KN+ +C+DCH   K  S + N EI+VRD  R H FKDG CSC
Sbjct: 527 AVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSC 586

Query: 611 MDY 613
            D+
Sbjct: 587 GDF 589


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/512 (40%), Positives = 293/512 (57%), Gaps = 20/512 (3%)

Query: 116 PQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174
           PQ A+ LF  ++  G   PD   +  AL  CA         Q H+H  KRG  S   + N
Sbjct: 59  PQLALRLFDHLLRSG-ADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCN 117

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
            LIH YA CG L  A KVFD   E   V+WN ++  +   G+ ++  + F  MQ     D
Sbjct: 118 GLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQ---ARD 174

Query: 235 GYTFQSITSACA--GLATLSLGMWAHAYILRHCDHSLVT---------DVLVNNSLIDMY 283
             ++ +I + C   G    ++ ++        C    VT         +  ++++LI+MY
Sbjct: 175 TVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMY 234

Query: 284 CKCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
            KC  ++ A  VFE++  + ++ +WN+++ GF  +G +E AL+ F R+ +     PN IT
Sbjct: 235 SKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEIT-GLVPNKIT 293

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           F  VL+AC+H G V EG   F+ M   Y I P + HYGC+VDL  RAG  D+A  ++  M
Sbjct: 294 FNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMM 353

Query: 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462
           PMKPDA +W++L+ AC K H +  L  +    +IE+     +G YVLLS +YA    W  
Sbjct: 354 PMKPDAAVWKALVGAC-KTHRNFELGRKAGHMLIEAAPNDHAG-YVLLSNIYALDGNWTG 411

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
           V  VRKLM D+GV K PG SSIEIDG+ HEF +GD SH   + IY  L  + ++LK  GY
Sbjct: 412 VHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGY 471

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
            PD S   +  + +D K+SSL LHSE+LAIA G+++  PG PIR+ KNLRVC DCH   K
Sbjct: 472 VPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCGDCHNAVK 531

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L+S+I+   IIVRD  RFHHF++GSCSC D+W
Sbjct: 532 LLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 121/253 (47%), Gaps = 30/253 (11%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A+  D++     F  ++  ++ +WNT+I  C  + + + +AI +F+ M+     LPD+ 
Sbjct: 154 YAAAGDVNALREFFVGMQARDTVSWNTIIAWCVENGEYE-EAIAVFREMLASMECLPDRV 212

Query: 137 T-FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T FP                        +G+  +  ++++LI+ Y+ C  ++ A  VF+N
Sbjct: 213 TLFP-----------------------GKGIEVEERLSSALINMYSKCACIEGAVHVFEN 249

Query: 196 M-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253
           +  + ++ +WN M+  F   G  + AL+LF RM+I    P+  TF ++ +AC+    +  
Sbjct: 250 LGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEE 309

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIIL 312
           GM     + +   + +  D+     ++D++C+ G  D A ++ + MP K D   W +++ 
Sbjct: 310 GMGCFERMTK--VYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVG 367

Query: 313 GFALHGRAEAALK 325
               H   E   K
Sbjct: 368 ACKTHRNFELGRK 380


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 330/564 (58%), Gaps = 12/564 (2%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ L  A+    + +  ++ +IH + S   +D A ++F Q+ + +  +W+++I     + 
Sbjct: 167 AETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNG 226

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDVY 171
            ++ QA+VLF+ M+  G  L         L A A + A+  G Q H  +FK G    D +
Sbjct: 227 KSE-QALVLFRDMVASGVCLSSG-VLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEF 284

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF-RRMQIL 230
           ++ SL+ FYA C  ++ A +VF  ++ +S+V W  ++  +    +   AL++F   M+I 
Sbjct: 285 VSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRID 344

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
             P+  +F S  ++C GL  +  G   HA  ++     L +   V  SL+ MY KCG + 
Sbjct: 345 VVPNESSFTSALNSCCGLEDIERGKVIHAAAVKM---GLESGGYVGGSLVVMYSKCGYVS 401

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            A  VF+ + ++++ SWNS+I+G A HG    AL  F++++  E   P+ IT  G+LSAC
Sbjct: 402 DAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQML-REGVDPDGITVTGLLSAC 460

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H GM+ + R +F     + ++T  +EHY  +VD+L R G ++EA  +V +MPMK ++++
Sbjct: 461 SHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMV 520

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           W +LL AC +KH+++ L++  A Q+ E E   CS  YVLLS +YAS+ RW +V L+R+ M
Sbjct: 521 WLALLSAC-RKHSNLDLAKRAANQIFEIEPD-CSAAYVLLSNLYASSSRWAEVALIRRKM 578

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
              GV K+PG S + + G  H+F + D SHP  ++IY  L+ +  KLK  GY PD  Q A
Sbjct: 579 KHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPD-QQFA 637

Query: 531 MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNV 590
           + D   + K+  L  HSERLAIA G+L+   G  I V KNLRVC DCH   KL+++I + 
Sbjct: 638 LHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDR 697

Query: 591 EIIVRDRARFHHFKDGSCSCMDYW 614
           EI+VRD +RFH FK+G CSC DYW
Sbjct: 698 EIVVRDSSRFHDFKNGICSCGDYW 721



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 111/275 (40%), Gaps = 52/275 (18%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDA-------KPQAIVLFQ----RMIEQGNVLPDKH 136
           ++   I N  +F++NT       +  +       K    +LF     R +++   + D+ 
Sbjct: 22  QILVGIRNSRTFSFNTATNDSTSTSTSTNSFNIIKSHKYLLFHHLNNRSLDEARAIFDQI 81

Query: 137 TFPFALKACAYLFAFSQGKQAHAHI--FKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
             P        L A++Q  +    I  F+R    DV   NS+I     CG +  A K+FD
Sbjct: 82  PTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFD 141

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
            M  R++VSW  ++D  ++ G    A  LF  M    EP                     
Sbjct: 142 EMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAM----EP--------------------- 176

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
                         +  DV   N++I  YC  G +D A Q+F  MP RD+ SW+S+I G 
Sbjct: 177 --------------MDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGL 222

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
             +G++E AL  F  +V       + +   G+ +A
Sbjct: 223 DHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAA 257



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           SLD AR +F+ +P   ++ +  ++  +A + R   A+  F R+  ++  S NSI     +
Sbjct: 70  SLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSI-----I 124

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP 406
             C H G +   R  FD M     ++     +  LVD L R G + EA  L   M PM  
Sbjct: 125 KGCLHCGDIVTARKLFDEMPRRTVVS-----WTTLVDGLLRLGIVQEAETLFWAMEPMDR 179

Query: 407 DAVIWRSLLDACC 419
           D   W +++   C
Sbjct: 180 DVAAWNAMIHGYC 192


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/597 (34%), Positives = 332/597 (55%), Gaps = 11/597 (1%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQLK-QIHAQALRTALPQQHKTLLIYSRIIHFA 78
           +F + R  G + +  +    L  C   S  K  I   +L       H    + S +  ++
Sbjct: 98  LFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYS 157

Query: 79  SFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
               L+ A ++F +I + +  TW  L      S   + +AI LF++M+E G V PD +  
Sbjct: 158 GSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHR-EAIDLFKKMVEMG-VKPDSYFI 215

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
              L AC ++     G+    ++ +  +  + ++  +L++ YA CG ++ A  VFD+M+E
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVE 275

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWA 257
           + +V+W+ MI  +         ++LF +M Q   +PD ++     S+CA L  L LG W 
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
            + I RH     +T++ + N+LIDMY KCG++    +VF+ M ++D+   N+ I G A +
Sbjct: 336 ISLIDRH---EFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           G  + +   F +   +   SP+  TF+G+L  C H G++ +G  +F+ +   Y +   +E
Sbjct: 393 GHVKLSFAVFGQ-TEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVE 451

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
           HYGC+VDL  RAG +D+A  L+ +MPM+P+A++W +LL  C +      L+E V K++I 
Sbjct: 452 HYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC-RLVKDTQLAETVLKELIA 510

Query: 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD 497
            E    +G YV LS +Y+   RW++   VR +M  KG+ K PG S IE++G  HEF A D
Sbjct: 511 LEPW-NAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADD 569

Query: 498 TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL 557
            SHP + +IY  L+ +  +++  G+ P  ++    D  ++ K+  L  HSE+LA+ALG++
Sbjct: 570 KSHPLSDKIYAKLEDLGNEMRLMGFVPT-TEFVFFDVEEEEKERVLGYHSEKLAVALGLI 628

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +   G  IRV KNLRVC DCHEV KLIS+I   EI+VRD  RFH F +GSCSC DYW
Sbjct: 629 STDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 185/377 (49%), Gaps = 11/377 (2%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           +++ LKQIH   +   L   H T L+   +     F    Y++ +F   + PN F +N+L
Sbjct: 25  TVNHLKQIHVSLINHHL--HHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSL 82

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I     +     + + LF  + + G  L    TFP  LKAC    +   G   H+ + K 
Sbjct: 83  INGFVNN-HLFHETLDLFLSIRKHGLYL-HGFTFPLVLKACTRASSRKLGIDLHSLVVKC 140

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   DV    SL+  Y+  G L+ A+K+FD + +RS+V+W  +   +   G    A+ LF
Sbjct: 141 GFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLF 200

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           ++M ++  +PD Y    + SAC  +  L  G W   Y+    +  +  +  V  +L+++Y
Sbjct: 201 KKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME---EMEMQKNSFVRTTLVNLY 257

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            KCG ++ AR VF+SM ++D+ +W+++I G+A +   +  ++ F ++ ++E+  P+  + 
Sbjct: 258 AKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQM-LQENLKPDQFSI 316

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           VG LS+C   G +  G ++   +I+ +     L     L+D+ A+ G +     +   M 
Sbjct: 317 VGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375

Query: 404 MKPDAVIWRSLLDACCK 420
            K D VI  + +    K
Sbjct: 376 EK-DIVIMNAAISGLAK 391


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 320/577 (55%), Gaps = 33/577 (5%)

Query: 50  KQIHAQALRTAL---PQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           K +H Q L+T     P+    LL +Y+++       D+  AF+VF ++   +   W+ +I
Sbjct: 267 KGVHGQILKTCYVLDPRVGVGLLQLYTQL------GDMSDAFKVFNEMPKNDVVPWSFMI 320

Query: 106 -RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
            R C        +A+ LF RM E   V+P++ T    L  CA       G+Q H  + K 
Sbjct: 321 ARFCQNGF--CNEAVDLFIRMRE-AFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKV 377

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   D+Y++N+LI  YA C  +D A K+F  +  ++ VSWN +I  +   GE   A  +F
Sbjct: 378 GFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMF 437

Query: 225 R---RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           R   R Q+       TF S   ACA LA++ LG+  H   ++  +      V V+NSLID
Sbjct: 438 REALRNQVSVTE--VTFSSALGACASLASMDLGVQVHGLAIKTNN---AKKVAVSNSLID 492

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG +  A+ VF  M   D+ SWN++I G++ HG    AL+  D ++ +    PN +
Sbjct: 493 MYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILD-IMKDRDCKPNGL 551

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TF+GVLS C++ G++ +G++ F+ MI ++ I P LEHY C+V LL R+G +D+A+ L+  
Sbjct: 552 TFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEG 611

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SGVYVLLSRVYASAR 458
           +P +P  +IWR++L A   ++     +EE A++  E    I       YVL+S +YA A+
Sbjct: 612 IPYEPSVMIWRAMLSASMNQN-----NEEFARRSAEEILKINPKDEATYVLVSNMYAGAK 666

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           +W +V  +RK M + GV KEPG S IE  G  H F  G + HP  K I G L+ ++ K  
Sbjct: 667 QWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKAT 726

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP-IRVFKNLRVCKDC 577
             GY PD   A ++D  D+ K   L +HSERLA+A G++ +      I + KNLR+C DC
Sbjct: 727 RAGYVPD-RNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDC 785

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H   K+IS I   ++++RD  RFHHF  G CSC D+W
Sbjct: 786 HSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 7/287 (2%)

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           +P+ +TF  ALKA   L AF   K  H  I K   V D  +   L+  Y   G +  A K
Sbjct: 244 MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFK 303

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLAT 250
           VF+ M +  +V W+ MI  F Q G  + A+ LF RM+  F  P+ +T  SI + CA    
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKC 363

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
             LG   H  +++        D+ V+N+LID+Y KC  +D A ++F  +  ++  SWN++
Sbjct: 364 SGLGEQLHGLVVK---VGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTV 420

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G+   G    A   F R  +    S   +TF   L AC     +  G     + I   
Sbjct: 421 IVGYENLGEGGKAFSMF-REALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTN 479

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           N   V      L+D+ A+ G+I  A  + + M    D   W +L+  
Sbjct: 480 NAKKVAVS-NSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISG 524



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 171/369 (46%), Gaps = 18/369 (4%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDY---AFRVFYQIENPNSFTWNTLIRAC 108
           I A+A+   + ++   L +++  I   ++    +   A  +F ++   N+ ++ TL +  
Sbjct: 66  ISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGY 125

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
           A         I L+ R+  +G+ L + H F   LK    L         H+ I K G  S
Sbjct: 126 ACQ-----DPIGLYSRLHREGHEL-NPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDS 179

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           + ++  +LI+ Y+ CG +D A  VF+ +L + +V W  ++  +V+ G F+ +LKL   M+
Sbjct: 180 NAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMR 239

Query: 229 IL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +  F P+ YTF +   A  GL         H  IL+ C    V D  V   L+ +Y + G
Sbjct: 240 MAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTC---YVLDPRVGVGLLQLYTQLG 296

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFVGV 346
            +  A +VF  MPK D+  W+ +I  F  +G    A+  F R+   E+F  PN  T   +
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRM--REAFVVPNEFTLSSI 354

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           L+ C   G  S   +    ++ +      +     L+D+ A+   +D A+ L + +  K 
Sbjct: 355 LNGC-AIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK- 412

Query: 407 DAVIWRSLL 415
           + V W +++
Sbjct: 413 NEVSWNTVI 421



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 132/318 (41%), Gaps = 17/318 (5%)

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLP--DKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           IR C  SV  K  A+ L        +++P  D H +   L+ C         K  H  I 
Sbjct: 23  IRQCGFSV--KTAALDLES----SDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDIL 76

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K+G   D++  N L++ Y   G    A  +FD M ER+ VS+  +   +          +
Sbjct: 77  KKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSR 136

Query: 223 LFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           L R      E + + F S       L    +  W H+ I++       ++  V  +LI+ 
Sbjct: 137 LHREGH---ELNPHVFTSFLKLFVSLDKAEICPWLHSPIVK---LGYDSNAFVGAALINA 190

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y  CGS+D AR VFE +  +D+  W  I+  +  +G  E +LK    + +   F PN+ T
Sbjct: 191 YSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRM-AGFMPNNYT 249

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
           F   L A    G     +     ++    +       G L+ L  + G++ +A  + + M
Sbjct: 250 FDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG-LLQLYTQLGDMSDAFKVFNEM 308

Query: 403 PMKPDAVIWRSLLDACCK 420
           P K D V W  ++   C+
Sbjct: 309 P-KNDVVPWSFMIARFCQ 325


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/533 (36%), Positives = 311/533 (58%), Gaps = 10/533 (1%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A R+F  + + +  TW T++    ++   + QA+  F+RM  QG +  D++TF   L
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQN-GLESQALNFFRRMRFQG-IAIDQYTFGSIL 279

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            AC  L A  QGKQ HA+I +     +V++ ++L+  Y+ C  +  A   F  M  ++++
Sbjct: 280 TACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNII 339

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  +I  + Q G  + A+++F  MQ    +PD +T  S+ S+CA LA+L  G   H   
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLA 399

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L      L+  + V+N+L+ +Y KCGS++ A ++F+ M   D  SW +++ G+A  GRA+
Sbjct: 400 LVS---GLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAK 456

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             +  F++++ ++   P+ +TF+GVLSAC+  G V +G  YF  M  ++ I P+ +HY C
Sbjct: 457 ETIDLFEKMLAKD-VKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTC 515

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           ++DL +R+G + EA   +  MPM PDA+ W +LL AC +    + + +  A+ ++E +  
Sbjct: 516 MIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSAC-RLRGDMEIGQWAAENLLEIDPQ 574

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
                YVLL  ++A+   WN V  +R+ M D+ V KEPGCS I+     H F A D SHP
Sbjct: 575 -NPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHP 633

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
            +K IY  L+ ++ K+   GY PD S + + D  D  K   +  HSE+LAIA G++ +  
Sbjct: 634 FSKGIYEKLEWLNSKMLEEGYKPDVS-SVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPH 692

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            MPIR+ KNLRVC DCH  TKLIS+I   +I+VRD  RFH F +G CSC D+W
Sbjct: 693 EMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 201/472 (42%), Gaps = 83/472 (17%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR--ACA 109
           +H   LRT LP    T L+   +  +        A RVF    +PN FT+N L+   A A
Sbjct: 27  LHCVILRT-LPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHA 85

Query: 110 RSVD----------------------------AKPQAIVLFQRMIEQGN-VLPDKHTFPF 140
           R +D                            A  +A+ L+  ++  G+ V P + T   
Sbjct: 86  RLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSA 145

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN----- 195
            + A + L   + G+Q H  I + G   + ++ + L+  YA  G +  A +VFD      
Sbjct: 146 MVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKN 205

Query: 196 --------------------------MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
                                     M +R  ++W  M+  F Q G    AL  FRRM+ 
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRF 265

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCG 287
                D YTF SI +AC  L+ L  G   HAYI+R H D     +V V ++L+DMY KC 
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYD----DNVFVGSALVDMYSKCR 321

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           S+  A   F  M  +++ SW ++I+G+  +G +E A++ F  +   +   P+  T   V+
Sbjct: 322 SIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEM-QRDGIDPDDFTLGSVI 380

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARAGNIDEALHLVSNMP 403
           S+C +   + EG  +  +      +   L HY      LV L  + G+I++A  L   M 
Sbjct: 381 SSCANLASLEEGAQFHCLA-----LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM- 434

Query: 404 MKPDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           +  D V W +L+       +   ++ L E++  + ++ +G    GV    SR
Sbjct: 435 LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSR 486



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 147/328 (44%), Gaps = 18/328 (5%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL 57
           M     Q G    ++ + + F   R +G   +  +  S LT C ++S L   KQIHA  +
Sbjct: 243 MVTGFTQNGL---ESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYII 299

Query: 58  RTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
           RT        + + S ++  ++    +  A   F ++   N  +W  LI    ++     
Sbjct: 300 RT---HYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQN-GCSE 355

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A+ +F  M   G + PD  T    + +CA L +  +G Q H      GL+  + ++N+L
Sbjct: 356 EAVRVFSEMQRDG-IDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNAL 414

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDG 235
           +  Y  CG ++ A+++FD ML    VSW  ++  + QFG     + LF +M     +PDG
Sbjct: 415 VTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDG 474

Query: 236 YTFQSITSACAGLATLSLGM-WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294
            TF  + SAC+    +  G  + H+      DH +V        +ID+Y + G L  A +
Sbjct: 475 VTFIGVLSACSRAGFVEKGCSYFHSM---QKDHGIVPIDDHYTCMIDLYSRSGRLKEAEE 531

Query: 295 VFESMPKR-DLTSWNSIILGFALHGRAE 321
             + MP   D   W +++    L G  E
Sbjct: 532 FIKQMPMHPDAIGWGTLLSACRLRGDME 559


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 301/534 (56%), Gaps = 20/534 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A   F ++   +  +WNTLI   A++           Q+  +  +V+P+K+   ++ 
Sbjct: 152 VEAALAFFNKMPVKDIASWNTLISGFAQNGQ--------MQKAFDLFSVMPEKNGVSWSA 203

Query: 143 KACAYLFAFSQGK-QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
               Y+     G  +A   ++K   +  V +  +++  Y   G ++LA ++F  M  ++L
Sbjct: 204 MISGYV---EHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           V+WN MI  +V+    +  LK+F+ M +    P+  +  S+   C+ L+ L LG   H  
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQL 320

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           + +     L  D     SLI MYCKCG LD A ++F  MP++D+ SWN++I G+A HG  
Sbjct: 321 VSKS---PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAG 377

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             AL  FD++    +  P+ ITFV V+ ACNH G V  G  YF  M  E+ I     HY 
Sbjct: 378 RKALHLFDKMR-NGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYT 436

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C++DLL RAG +DEA+ L+  MP KP A I+ +LL AC + H ++ L+E  A+ ++  + 
Sbjct: 437 CVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGAC-RIHKNLDLAEFAARNLLNLDP 495

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              +G YV L+ +YA+  +W+ V  VRK+M +  V K PG S IEI  + HEF + D  H
Sbjct: 496 TSATG-YVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLH 554

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           P+   I+  L+ +D K+K  GY PD  + A+ D  ++ K+  L  HSE+LAIA G++   
Sbjct: 555 PELTSIHKKLNELDGKMKLAGYVPDL-EFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTA 613

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PG PIRVFKNLRVC DCH   K IS I   EIIVRD  RFHHF++G CSC DYW
Sbjct: 614 PGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF-GEFDSALKLFRRMQ 228
           V +N ++  F  +C  L+ A  VF+ M  R+ V+WN M+  + +  G+   A +LF ++ 
Sbjct: 74  VSLNKTIASFVRACD-LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP 132

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              EPD  ++ +I   C       L  +     L   +   V D+   N+LI  + + G 
Sbjct: 133 ---EPDSVSY-NIMLVC------YLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           +  A  +F  MP+++  SW+++I G+  HG  EAA + +  +
Sbjct: 183 MQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV 224



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA-LHGRAEAALKYFDR 329
           +DV+  N  I  + +   L+ AR VFE M  R   +WN+++ G+  + G+ + A + FD+
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLA 387
           +       P+S+++  ++  C  R    E    F      +N  PV  +  +  L+   A
Sbjct: 131 IP-----EPDSVSY-NIMLVCYLRSYGVEAALAF------FNKMPVKDIASWNTLISGFA 178

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           + G + +A  L S MP K + V W +++     +H  +  +EE+ K V
Sbjct: 179 QNGQMQKAFDLFSVMPEK-NGVSWSAMISGYV-EHGDLEAAEELYKNV 224



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 277 NSLIDMYCK-CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           N+++  Y K  G +  A ++F+ +P+ D  S+N +++ +      EAAL +F+++ V++ 
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDI 167

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            S N++     +S     G + +  D F VM  +  ++     +  ++      G+++ A
Sbjct: 168 ASWNTL-----ISGFAQNGQMQKAFDLFSVMPEKNGVS-----WSAMISGYVEHGDLEAA 217

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
             L  N+ MK  +V+  + +     K   V L+E + +++
Sbjct: 218 EELYKNVGMK--SVVVETAMLTGYMKFGKVELAERIFQRM 255


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/539 (36%), Positives = 309/539 (57%), Gaps = 10/539 (1%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    L+ A +VF +I   +  TW  L      +     +AI LF++M+E G V PD +
Sbjct: 156 YSGSGRLNDAHKVFEEIPERSVVTWTALFSGYT-TAGKHREAIDLFKKMVEMG-VRPDSY 213

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                L AC ++     G+    H+ +  +  + ++  +L++ YA CG ++ A  VFD+M
Sbjct: 214 FIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSM 273

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
            E+ +V+W+ MI  +         ++ F +M Q   +PD ++     S+CA L  L LG 
Sbjct: 274 GEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE 333

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           W  + I RH     +T++ + N+LIDMY KCG++    +VF+ M ++D+   N+ I G A
Sbjct: 334 WGISLIDRH---EFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLA 390

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            +G  + +   F +   +   SP+  TF+G+L  C H G++ +G  +F+ +   Y +   
Sbjct: 391 KNGHVKLSFAVFGQ-TEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHYGC+VDL  RAG +D+A  L+ +MPM+P+A++W +LL  C +      L+E V K++
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC-RLVKDTQLAETVLKEL 508

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           I  E    +G YV LS +Y+ + RW++   VR +M  KG+ K PG S IE++G  HEF A
Sbjct: 509 IALEPW-NAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLA 567

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            D SHP + +IY  L+ +  +++  G+ P  ++    D  D+ K+  L  HSE+LA+A G
Sbjct: 568 DDKSHPLSDKIYAKLEDLGNEMRLMGFVPT-TEFVFFDVEDEEKERVLGHHSEKLAVAFG 626

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +++   G  IRV KNLRVC DCHEV KLIS+I   EI+VRD  RFH F +GSCSC DYW
Sbjct: 627 LISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 186/378 (49%), Gaps = 13/378 (3%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           + + LKQ+H   +   L   H T L+   +     F    Y+F +F   + PN F +NTL
Sbjct: 25  TFNHLKQVHVSLIHHHL--HHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTL 82

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I     +     + + LF  + + G  L    TFP  LKAC        G   H+ + K 
Sbjct: 83  INGFVNN-HLFHETLDLFLSIRKHGLNL-HGFTFPLVLKACTRASNRKLGIDLHSLVVKC 140

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   DV    SL+  Y+  G L+ A+KVF+ + ERS+V+W  +   +   G+   A+ LF
Sbjct: 141 GFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLF 200

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH-SLVTDVLVNNSLIDM 282
           ++M ++   PD Y    + SAC  +  L  G W    I++H +   +  +  V  +L+++
Sbjct: 201 KKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEW----IVKHMEEMEMQKNSFVRTTLVNL 256

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342
           Y KCG ++ AR VF+SM ++D+ +W+++I G+A +   +  +++F ++ ++E+  P+  +
Sbjct: 257 YAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQM-LQENLKPDQFS 315

Query: 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402
            VG LS+C   G +  G ++   +I+ +     L     L+D+ A+ G +     +   M
Sbjct: 316 IVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374

Query: 403 PMKPDAVIWRSLLDACCK 420
             K D VI  + +    K
Sbjct: 375 KEK-DIVIMNAAISGLAK 391


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 299/538 (55%), Gaps = 47/538 (8%)

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           A+   +D + +VF Q+   N  +W  +I A  +S +   +AI LF +MI           
Sbjct: 6   AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS---------- 55

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
              A   C                          + NSLI  YA  G ++ A K FD + 
Sbjct: 56  ---ASVNC--------------------------VGNSLISMYARSGRMEDARKAFDILF 86

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMW 256
           E++LVS+N ++D + +  + + A  LF  +         +TF S+ S  A +  +  G  
Sbjct: 87  EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 146

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H  +L+       ++  + N+LI MY +CG+++ A QVF  M  R++ SW S+I GFA 
Sbjct: 147 IHGRLLKG---GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 203

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL 376
           HG A  AL+ F +++ E    PN IT+V VLSAC+H GM+SEG+ +F+ M  E+ I P +
Sbjct: 204 HGFATRALEMFHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRM 262

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
           EHY C+VDLL R+G + EA+  +++MP+  DA++WR+LL A C+ H +  L    A+ ++
Sbjct: 263 EHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA-CRVHGNTELGRHAAEMIL 321

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG 496
           E E       Y+LLS ++ASA +W DV  +RK M ++ + KE GCS IE++   H F  G
Sbjct: 322 EQEPDD-PAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 380

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
           +TSHPQ  QIY  LD +  K+K  GY PD +   + D  ++ K+  L  HSE++A+A G+
Sbjct: 381 ETSHPQAWQIYQELDQLASKIKEMGYIPD-TDFVLHDIEEEQKEQFLFQHSEKIAVAFGL 439

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++     PIR+FKNLRVC DCH   K IS     EI+VRD  RFHH K+G CSC DYW
Sbjct: 440 ISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 42/272 (15%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +SLLS      +M + +QIH + L+          +  + I  ++   +++ AF+VF ++
Sbjct: 129 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ--CICNALISMYSRCGNIEAAFQVFNEM 186

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           E+ N  +W ++I   A+   A  +A+ +F +M+E G   P++ T+   L AC+++   S+
Sbjct: 187 EDRNVISWTSMITGFAKHGFA-TRALEMFHKMLETG-TKPNEITYVAVLSACSHVGMISE 244

Query: 154 GKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
           G++    ++K  G+V         +  YA                         M+D   
Sbjct: 245 GQKHFNSMYKEHGIVPR-------MEHYA------------------------CMVDLLG 273

Query: 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
           + G    A++    M ++   D   ++++  AC       LG  A   IL          
Sbjct: 274 RSGLLVEAMEFINSMPLM--ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAY 331

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           +L++N    ++   G      ++ +SM +R+L
Sbjct: 332 ILLSN----LHASAGQWKDVVKIRKSMKERNL 359


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 307/535 (57%), Gaps = 15/535 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV-LPDKHTFPFALKA 144
           A R F +I +PN      +     R+ +    ++ LF+ MI   +  + D+     A  A
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRN-NLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL--ANKVFDNMLERSLV 202
            A +         HA I K G   +  + N+++  YA  G  DL  A KVFD M ER +V
Sbjct: 62  SARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVV 120

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           SWN MI  + Q G    A+ L+ +M  +    + +     ++  ACA    +  G   H 
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHN 180

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
            ++R     L  +V V  S++DMY KCG +++A + F  + ++++ SW+++I G+ +HGR
Sbjct: 181 QVVRM---GLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGR 237

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            + AL+ F  +       PN ITF+ VL+AC+H G++ EGR +++ M  E+ I   +EHY
Sbjct: 238 GQEALEIFTEMK-RSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 296

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
           GC+VDLL RAG +DEA  L+  M +KPDA IW +LL AC + H +V L+E   K++ E +
Sbjct: 297 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC-RIHKNVELAEMSVKRLFELD 355

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               SG YVLLS +YA A  W DV  +R L+  + + K PG SS E+ G  + F+ GD S
Sbjct: 356 AS-NSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKS 414

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HPQ  +IY +L+ + E+++  GY P+ + + + D  ++ K+S+LR+HSE+LA+A  ++N 
Sbjct: 415 HPQHIEIYSYLEKLLERMQEAGYVPN-TGSVLHDLDEEEKESALRIHSEKLAVAFALMNS 473

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            P   I + KNLRVC DCH   K I++I   EII+RD  RFHHFKDG CSC DYW
Sbjct: 474 VPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 316/595 (53%), Gaps = 30/595 (5%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF---AD-LDYAFRVFY 91
           L S L    ++S  KQ HA+    AL   H    + +R +   +    AD L +A  +  
Sbjct: 16  LESLLPHLSTLSHYKQFHARL--HALGTLHSYPSLRARFLDRLALLPHADALPHALLLLR 73

Query: 92  QIENPNSFTWNTLIRACARS---VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
            +  P +  +N  +R  A S     +                   D  +  FALKA A  
Sbjct: 74  SLPYPATNDFNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARC 133

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                  Q HA + + G+ +DV +  +L+  YA CG L  A +VFD M  R + +WN ++
Sbjct: 134 SDAFATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALL 193

Query: 209 DAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSACAGLATLSLGMWAHAYI 261
               Q  E + AL LFRR+   F       EP+  T  +  SACA L  L  G+ AH + 
Sbjct: 194 AGLAQGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFA 253

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES--MPKRDLTSWNSIILGFALHGR 319
                   V +V V N+LIDMY KCGSL  A +VF S  +  R L S+N+ I   ++HG 
Sbjct: 254 R---TIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGH 310

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            E ALK FD +       P+ +T++ VL  CNH G+V +GR  FD M     + P ++HY
Sbjct: 311 GEDALKLFDEMPAR--IEPDEVTYLAVLGGCNHAGLVDDGRRVFDSM----RVPPNMKHY 364

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
           G +VDLL RAG + EA  ++ +MP   D V+W++LL A  K H +V L+E  A ++ +  
Sbjct: 365 GTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAA-KMHGNVDLAELAATKLADL- 422

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
           G    G YVLLS VYAS  RW DVG VR  M    V K PG S  EIDG+ H+F  GD  
Sbjct: 423 GSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKE 482

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           H + ++IY  LD I  K+   GY P+ S   + D  ++ KQ +L  HSE+LAIA G+++ 
Sbjct: 483 HLRWREIYRALDEIGSKICELGYEPETSNV-LHDIGEEEKQYALSYHSEKLAIAFGLIST 541

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PG  IRV KNLR+C DCH V KLIS+ +   II+RDRARFH F+DG CSC DYW
Sbjct: 542 PPGETIRVIKNLRICGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/539 (38%), Positives = 308/539 (57%), Gaps = 9/539 (1%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL  A +VF ++ +    TWN +I    +  +   + + LF+ M   G   PD++
Sbjct: 35  YVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQ-FEYNEEGLSLFREMHGLG-FSPDEY 92

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T        A L + S G+Q H +  K GL  D+ +N+SL H Y   G L     V  +M
Sbjct: 93  TLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSM 152

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGM 255
             R+LV+WN +I    Q G  ++ L L++ M+I    P+  TF ++ S+C+ LA    G 
Sbjct: 153 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQ 212

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             HA  ++       + V V +SLI MY KCG L  A + F      D   W+S+I  + 
Sbjct: 213 QIHAEAIKI---GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYG 269

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG+ + A+K F+ +  +     N + F+ +L AC+H G+  +G + FD+M+ +Y   P 
Sbjct: 270 FHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPG 329

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           L+HY C+VDLL RAG +D+A  ++ +MP+KPD VIW++LL A C  H +  ++++V K++
Sbjct: 330 LKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSA-CNIHKNAEMAQKVFKEI 388

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           +E +    S  YVLL+ V+ASA+RW DV  VRK M DK V KE G S  E  G  H+F  
Sbjct: 389 LEIDPND-SACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKM 447

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           GD S  ++K+IY +L  +  ++K +GY PD + + + D  ++ K+S L  HSE+LA+A  
Sbjct: 448 GDRSQSKSKEIYSYLKELTLEMKLKGYKPD-TASVLHDMDEEEKESDLVQHSEKLAVAFA 506

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++ L  G PIR+ KNLRVC DCH   K IS I N EI +RD +RFHHF +G CSC DYW
Sbjct: 507 LMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 7/258 (2%)

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           +++R    +   +N LI+ Y   G L  A KVFD M +R L +WN MI   +QF   +  
Sbjct: 16  LYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEG 75

Query: 221 LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           L LFR M  L F PD YT  S+ S  AGL ++S+G   H Y ++   + L  D++VN+SL
Sbjct: 76  LSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIK---YGLELDLVVNSSL 132

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
             MY + G L     V  SMP R+L +WN++I+G A +G  E  L Y  +++      PN
Sbjct: 133 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVL-YLYKMMKISGCRPN 191

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            ITFV VLS+C+   +  +G+      I +   + V+     L+ + ++ G + +A    
Sbjct: 192 KITFVTVLSSCSDLAIRGQGQQIHAEAI-KIGASSVVAVVSSLISMYSKCGCLGDAAKAF 250

Query: 400 SNMPMKPDAVIWRSLLDA 417
           S      D V+W S++ A
Sbjct: 251 SERE-DEDEVMWSSMISA 267



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 45/216 (20%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           ++LSS ++     Q +QIHA+A++         +     I  ++    L  A + F + E
Sbjct: 197 TVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSL--ISMYSKCGCLGDAAKAFSERE 254

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + +   W+++I A         +AI LF  M EQ  +  ++  F   L AC         
Sbjct: 255 DEDEVMWSSMISAYGFHGQGD-EAIKLFNSMAEQTEMEVNEVAFLNLLYAC--------- 304

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-----SLVSWNVMID 209
             +H+ +  +GL                        ++FD M+E+      L  +  ++D
Sbjct: 305 --SHSGLKDKGL------------------------ELFDMMVEKYGFKPGLKHYTCVVD 338

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
              + G  D A  + + M I  +PD   ++++ SAC
Sbjct: 339 LLGRAGCLDQAEAIIKSMPI--KPDPVIWKTLLSAC 372


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 325/565 (57%), Gaps = 12/565 (2%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           QIHA A++  L    +  +  S +  +A F  + Y   +F ++ + +  +W T+I   A+
Sbjct: 404 QIHAYAMKNGLDSDLQ--VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
           +  +  +A+ LF+ +  +G  L D       L AC+ L   S  K+ H++I ++GL SD+
Sbjct: 462 N-GSHSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDL 518

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QI 229
            + N ++  Y  CG++D A ++F+ +  + +VSW  MI  +V  G  + AL+LF  M + 
Sbjct: 519 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 578

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             EPD  +  SI SA A L+ L  G   H +++R      V +  + ++L+DMY +CG+L
Sbjct: 579 GVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK---GFVLEGSLASTLVDMYARCGTL 635

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + +R VF  +  +DL  W S+I  + +HG   AA+  F R+  +ES +P+ I FV VL A
Sbjct: 636 EKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRME-DESIAPDHIAFVAVLYA 694

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C+H G+++EGR + + M  EY + P  EHY CLVDLL RA +++EA   V  M ++P A 
Sbjct: 695 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAE 754

Query: 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
           +W +LL AC + H++  L E  A++++E +     G YVL+S VY++ RRW DV  VR  
Sbjct: 755 VWCALLGAC-QIHSNKELGEIAAQKLLEMDPE-NPGNYVLVSNVYSAERRWKDVEXVRMR 812

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529
           M   G+ K PGCS IE+    H F A D SHPQ+ +IY  L  I EKL   G     ++ 
Sbjct: 813 MKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKF 872

Query: 530 AMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
            + +  ++ K   L  HSERLAIA G+L    G  +R+ KNLRVC DCH   KLIS+ F 
Sbjct: 873 VLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFE 932

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            E+++RD  RFHHFK G CSC D W
Sbjct: 933 RELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 11/280 (3%)

Query: 142 LKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           L+ C    A S+G+Q HAH I    L + V+++  L+  Y  CG L  A K+FD M  ++
Sbjct: 85  LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKT 144

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHA 259
           + +WN MI A+V  GE   +L+L+R M++   P D  TF  I  AC  L     G   H 
Sbjct: 145 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHG 204

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHG 318
             ++      V+ V V NS++ MY KC  L+ ARQ+F+ MP K D+ SWNS+I  ++ +G
Sbjct: 205 LAIK---EGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR-DYFDVMINEYNITPVLE 377
           ++  AL+ F  +  + S +PN+ TFV  L AC     + +G   +  V+ + Y I   + 
Sbjct: 262 QSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 320

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +   L+ + AR G + EA ++  NM    D + W S+L  
Sbjct: 321 N--ALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 357



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 182/385 (47%), Gaps = 11/385 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           +SS+L      K++S+ +Q+HA  + T+    +   L    +  +     L  A ++F  
Sbjct: 81  YSSVLELCGSKKALSEGQQVHAHMI-TSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           + +   FTWN +I A     + +P   +   R +    +  D  TFP  LKAC  L    
Sbjct: 140 MPHKTIFTWNAMIGAYV--TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRR 197

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-LVSWNVMIDAF 211
            G + H    K G VS V++ NS++  Y  C  L+ A ++FD M E+  +VSWN MI A+
Sbjct: 198 YGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 257

Query: 212 VQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G+   AL+LF  MQ     P+ YTF +   AC   + +  GM+ HA +L+    S  
Sbjct: 258 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK---SSYY 314

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +V V N+LI MY + G +  A  +F +M   D  SWNS++ GF  +G    AL+++  +
Sbjct: 315 INVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM 374

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ +  + +++A    G    G       +    +   L+    LVD+ A+  
Sbjct: 375 -RDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN-GLDSDLQVGNSLVDMYAKFC 432

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
           ++     +   MP K D V W +++
Sbjct: 433 SMKYMDCIFDKMPDK-DVVSWTTII 456



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 173/336 (51%), Gaps = 11/336 (3%)

Query: 82  DLDYAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           DL+ A ++F ++ E  +  +WN++I A + S     +A+ LF  M ++ ++ P+ +TF  
Sbjct: 230 DLNGARQLFDRMPEKEDVVSWNSMISAYS-SNGQSIEALRLFGEM-QKASLAPNTYTFVA 287

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           AL+AC       QG   HA + K     +V++ N+LI  YA  G +  A  +F NM +  
Sbjct: 288 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 347

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHA 259
            +SWN M+  FVQ G +  AL+ +  M+   + PD     SI +A A       GM  HA
Sbjct: 348 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHA 407

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           Y ++   + L +D+ V NSL+DMY K  S+     +F+ MP +D+ SW +II G A +G 
Sbjct: 408 YAMK---NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL+ F R V  E    + +    +L AC+   ++S  ++    +I +     VL++ 
Sbjct: 465 HSRALELF-REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN- 522

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +VD+    GN+D A  +   +  K D V W S++
Sbjct: 523 -GIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI 556


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 328/586 (55%), Gaps = 28/586 (4%)

Query: 40  LTECKSMSQLKQ---IHAQALRTALPQ----QHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           L  C  +S L+    +HAQ  R         Q+  + +Y++     S      A  VF  
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS------ARTVFEG 179

Query: 93  IENPNS--FTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           +  P     +W  ++ A A+  + +P +A+ +F  M  + +V PD       L A   L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQ--NGEPMEALEIFSHM-RKMDVKPDWVALVSVLNAFTCLQ 236

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
              QG+  HA + K GL  +  +  SL   YA CG +  A  +FD M   +L+ WN MI 
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 210 AFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + + G    A+ +F  M      PD  +  S  SACA + +L      + Y+ R  D+ 
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGR-SDYR 355

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
              DV ++++LIDM+ KCGS++ AR VF+    RD+  W+++I+G+ LHGRA  A+  + 
Sbjct: 356 --DDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY- 412

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R +      PN +TF+G+L ACNH GMV EG  +F++M  ++ I P  +HY C++DLL R
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGR 471

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG++D+A  ++  MP++P   +W +LL AC KKH  V L E  A+Q+   +    +G YV
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSAC-KKHRHVELGEYAAQQLFSIDPS-NTGHYV 529

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
            LS +YA+AR W+ V  VR  M +KG+ K+ GCS +E+ G    F  GD SHP+ ++I  
Sbjct: 530 QLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIER 589

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            ++ I+ +LK  G+  +   A++ D  D+  + +L  HSER+AIA G+++   G P+R+ 
Sbjct: 590 QVEWIESRLKEGGFVAN-KDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRIT 648

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR C +CH  TKLIS++ + EI+VRD  RFHHFKDG CSC DYW
Sbjct: 649 KNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 204/387 (52%), Gaps = 18/387 (4%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           ++SL+ S T     +QLKQIHA+ L   L  Q    LI   I   +SF D+ +A +VF  
Sbjct: 24  YASLIDSATH---KAQLKQIHARLLVLGL--QFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +  P  F WN +IR  +R+ +    A++++  M +   V PD  TFP  LKAC+ L    
Sbjct: 79  LPRPQIFPWNAIIRGYSRN-NHFQDALLMYSNM-QLARVSPDSFTFPHLLKACSGLSHLQ 136

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDA 210
            G+  HA +F+ G  +DV++ N LI  YA C  L  A  VF+   + ER++VSW  ++ A
Sbjct: 137 MGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q GE   AL++F  M+ +  +PD     S+ +A   L  L  G   HA +++     +
Sbjct: 197 YAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK-MGLEI 255

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D+L+  SL  MY KCG +  A+ +F+ M   +L  WN++I G+A +G A  A+  F  
Sbjct: 256 EPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHE 313

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLAR 388
           + + +   P++I+    +SAC   G + + R  ++ V  ++Y     +     L+D+ A+
Sbjct: 314 M-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAK 370

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G++ E   LV +  +  D V+W +++
Sbjct: 371 CGSV-EGARLVFDRTLDRDVVVWSAMI 396


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 319/603 (52%), Gaps = 52/603 (8%)

Query: 50  KQIHAQALRTALPQQH---KTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           K++HAQ +++ L   H   KTL     I  +     L  A ++F  +   +   W T++ 
Sbjct: 28  KKLHAQIIKSGLNHHHPFPKTL-----IDAYGKCGLLKDALKLFDALPQQDHVAWATVLS 82

Query: 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF--SQGKQAHAHIFKR 164
           AC  S +   +A  +   ++ +G + PD   F   +KACA L +     GKQ HA     
Sbjct: 83  ACNLS-NLPHKAFSISLPILHEG-LQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLS 140

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
               D  + +SL+  YA     D    VFD++ E S +SW  MI  + + G    AL+LF
Sbjct: 141 PFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELF 200

Query: 225 R---------------------------------RMQILFEPDGYTFQSITSACAGLATL 251
           R                                 R + +   D     S+  ACA  A  
Sbjct: 201 RESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVR 260

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            LG   H  ++     S +    ++N+L+DMY KC  +  A+ +F  M ++D+ SW SII
Sbjct: 261 ELGKQVHCVVITLGYESCL---FISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSII 317

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
           +G A HG AE AL  +D +V+     PN +TFVG++ AC+H G+VS+GR  F  M+ ++ 
Sbjct: 318 VGTAQHGLAEEALTLYDDMVLA-GVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFG 376

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           I P L+HY CL+DL +R+G++DEA +L+  MP+KPD   W +LL AC K H +  ++  +
Sbjct: 377 IRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSAC-KHHGNTKMAVRI 435

Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
           A  +++ +    S  Y+LLS +YA A  W +V +VRKLM  K V K PG S +++     
Sbjct: 436 ADHLLDLKPEDPSS-YILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQ 494

Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
            F AG+ S P   +I G +  +D +++ RGY PD S + ++D     K+  L  HSERLA
Sbjct: 495 VFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTS-SVLLDMDQQEKERQLFWHSERLA 553

Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
           +A G+L   PG  IR+ KNLRVC DCH V KLIS I + EI VRD  R+HHFKDG CSC 
Sbjct: 554 LAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCN 613

Query: 612 DYW 614
           D+W
Sbjct: 614 DFW 616


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 331/601 (55%), Gaps = 21/601 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F+++R+  +    S+  + +  C ++  L   +Q+H+  L+          ++ + +  
Sbjct: 245 LFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGN--VMTALMDA 302

Query: 77  FASFADLDYAFRVFYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
           +     LD A  VF  +  + N  +W  +I  C ++ D  P A  LF RM E G V P+ 
Sbjct: 303 YNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDI-PLAAALFSRMREDG-VAPND 360

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+   L      F      Q HA + K        +  +L+  Y+     + A  +F  
Sbjct: 361 LTYSTILTVSEASFP----PQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKM 416

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG-LATLSL 253
           + ++ +VSW+ M+  + Q G+ + A   F +M +   +P+ +T  S   ACA   A + L
Sbjct: 417 IDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDL 476

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
           G   HA  ++H  H  +    V+++L+ MY + GS++ A+ VFE    RDL SWNS++ G
Sbjct: 477 GRQFHAISIKHRCHDALC---VSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSG 533

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +A HG ++ AL  F ++ VE     + +TF+ V+  C H G+V EG+ YFD+M+ +Y IT
Sbjct: 534 YAQHGYSQKALDVFRQMEVE-GIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGIT 592

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P ++HY C+VDL +RAG +DE + L+  MP      IWR+LL A C+ H +V L +  A+
Sbjct: 593 PTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGA-CRVHKNVELGKLAAE 651

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           +++  E  + S  YVLLS +Y++A +W +   VRKLM  K V KE GCS I+I    H F
Sbjct: 652 KLLSLE-PLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFF 710

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
            A D SHP ++QIY  L  +  KLK  GY PD S     D  +D K++ L +HSERLA+A
Sbjct: 711 IASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPH-DVAEDQKEAMLAMHSERLALA 769

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            G++   P  P+ +FKNLRV  D H V K++S I + EI++RD  RFHHFK G CSC D+
Sbjct: 770 FGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDF 829

Query: 614 W 614
           W
Sbjct: 830 W 830



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 185/406 (45%), Gaps = 30/406 (7%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH- 76
            + +R +G      +LL  +  C S+      KQ+HA  +R      H  + + + ++  
Sbjct: 43  LDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCG--HDHGDIRVGTSLVDM 100

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           + ++  +    +VF  +   N  TW +L+    ++       + LF RM  +G V P+  
Sbjct: 101 YMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQA-GVLLDVMSLFFRMRAEG-VWPNPF 158

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           TF   L   A       G+  HA   K G  S V++ NSL++ YA CG ++ A  VF  M
Sbjct: 159 TFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRM 218

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFR--RMQILFEPDGYTFQSITSACAGLATLSLG 254
             R +VSWN ++   V  G    AL+LF   R  I    +  T+ ++ + CA L  L L 
Sbjct: 219 ETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTES-TYSTVINLCANLKHLGLA 277

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILG 313
              H+ +L+H  HS      V  +L+D Y K G LD A  VF  M   +++ SW ++I G
Sbjct: 278 RQLHSSVLKHGFHSYGN---VMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDG 334

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG----RDYFDVMINE 369
              +G    A   F R+  E+  +PN +T+  +L+       VSE     + +  V+   
Sbjct: 335 CIQNGDIPLAAALFSRM-REDGVAPNDLTYSTILT-------VSEASFPPQIHAQVIKTN 386

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           Y  TP +     L+   ++  + +EAL +   +  K D V W ++L
Sbjct: 387 YECTPTVG--TALMVSYSKLCSTEEALSIFKMIDQK-DVVSWSAML 429


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 334/602 (55%), Gaps = 22/602 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77
           F   R  G      +  S++  C S+  +   KQ+H  AL+  +  +   L + S +   
Sbjct: 94  FCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE---LFVGSNLEDM 150

Query: 78  ASFADLDY-AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
            S     + A +VF ++   +  +W  +I   ++ +    +A++ F++MI++  V  D+H
Sbjct: 151 YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK-IGEFEEALLAFKKMIDE-EVTIDQH 208

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
                L AC  L A   G+  H+ + K G  SD+++ N+L   Y+  G ++ A+ VF   
Sbjct: 209 VLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGID 268

Query: 197 LE-RSLVSWNVMIDAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLS 252
            E R++VS+  +ID +V+  + +  L +F   RR  I  EP+ +TF S+  ACA  A L 
Sbjct: 269 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI--EPNEFTFSSLIKACANQAALE 326

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   HA +++    +   D  V++ L+DMY KCG L+ A Q F+ +      +WNS++ 
Sbjct: 327 QGTQLHAQVMKI---NFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVS 383

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            F  HG  + A+K+F+R+V +    PN+ITF+ +L+ C+H G+V EG DYF  M   Y +
Sbjct: 384 VFGQHGLGKDAIKFFERMV-DRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 442

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P  EHY C++DLL RAG + EA   ++ MP +P+A  W S L AC + H    + +  A
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC-RIHGDKEMGKLAA 501

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           +++++ E    SG  VLLS +YA+ R+W DV  VR  M D  V K PG S +++    H 
Sbjct: 502 EKLVKLEPKN-SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 560

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F A D SH +   IY  LD + +++K+ GY P  + +  +D  D  K+  L  HSER+A+
Sbjct: 561 FGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVP-XTDSVPLDMDDXMKEKLLHRHSERIAV 619

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A  ++++  G PI V KNLRVC DCH   K IS++   +IIVRD +RFHHF DGSCSC D
Sbjct: 620 AFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGD 679

Query: 613 YW 614
           YW
Sbjct: 680 YW 681



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 182/388 (46%), Gaps = 14/388 (3%)

Query: 31  NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
           N  + ++ +  + K + + KQ+HA  L         T L    +  ++   +LD+A ++F
Sbjct: 6   NALAHVIQTYAKTKRLRRGKQLHA--LLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
             +   N  +W  +I   +++     +AI  F  M   G V P +  F  A++ACA L +
Sbjct: 64  DTMPQRNLVSWTAMISGLSQN-SKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGS 121

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GKQ H    K G+ S++++ ++L   Y+ CG +  A KVF+ M  +  VSW  MID 
Sbjct: 122 IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 181

Query: 211 FVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + + GEF+ AL  F++M       D +   S   AC  L     G   H+ +++      
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK---LGF 238

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFD 328
            +D+ V N+L DMY K G ++ A  VF    + R++ S+  +I G+    + E  L  F 
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLA 387
            L   +   PN  TF  ++ AC ++  + +G   +  VM   ++  P +     LVD+  
Sbjct: 299 EL-RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYG 355

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + G ++ A+     +   P  + W SL+
Sbjct: 356 KCGLLEHAIQAFDEIG-DPTEIAWNSLV 382



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 37/327 (11%)

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +L D +     ++  A      +GKQ HA +   G     ++ N L++ Y+ CG LD A 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLA 249
           K+FD M +R+LVSW  MI    Q  +F  A++ F  M+I  E P  + F S   ACA L 
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           ++ +G   H   L+     + +++ V ++L DMY KCG++  A +VFE MP +D  SW +
Sbjct: 121 SIEMGKQMHCLALK---FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTA 177

Query: 310 IILGFALHGRAEAALKYFDRLVVEE-----SFSPNSITFVGVLSACN-----HRGMVSEG 359
           +I G++  G  E AL  F +++ EE         +++   G L AC      H  +V  G
Sbjct: 178 MIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG 237

Query: 360 --RDYF--DVMINEYNITPVLE----------------HYGCLVDLLARAGNIDEALHLV 399
              D F  + + + Y+    +E                 Y CL+D       I++ L + 
Sbjct: 238 FESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVF 297

Query: 400 SNM---PMKPDAVIWRSLLDACCKKHA 423
             +    ++P+   + SL+ AC  + A
Sbjct: 298 VELRRQGIEPNEFTFSSLIKACANQAA 324


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 297/526 (56%), Gaps = 53/526 (10%)

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            +L D  T PF LK+CA L     G+  H    + GL  D Y+  SLI  Y  CG +  A
Sbjct: 102 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 161

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ--------------------- 228
            K+FD M+ R + SWN +I  +++ GE   A  LF RM+                     
Sbjct: 162 RKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAE 221

Query: 229 ---ILFE----------PDGYTFQSITSACAGLATLSLGMWAHAY---ILRHCDHSLVTD 272
               LF+          P+  T  S+  ACA  A L  G   H +   I  H + S    
Sbjct: 222 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSS---- 277

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALKYFDRL 330
             V  +L  MY KC SL  AR  F+ + +  ++L +WN++I  +A HG    A+  F+ +
Sbjct: 278 --VQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENM 335

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +      P+++TF+G+LS C+H G++  G ++F+ M   +++ P +EHY C+VDLL RAG
Sbjct: 336 L-RAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ--VIESEGGICSGVYV 448
            + EA  L+S MPM+    +W +LL A C+ H ++ ++E  A++  V+E +    SG YV
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALL-AACRSHRNLEIAELAARRLFVLEPDN---SGNYV 450

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +YA A  W +V  +R L+  +G+ K PGCS IEI+G +H F   D SHPQ K+IY 
Sbjct: 451 LLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYK 510

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
           FL+ + EK+K  GY PD S   + D  ++ K+ +L  HSE+LAIA G+LN +PG+ +RV 
Sbjct: 511 FLEALPEKIKMAGYIPDTS-FVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVT 569

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR+C DCH  TK IS+I+  EIIVRD  RFH FKDGSCSC DYW
Sbjct: 570 KNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 148/337 (43%), Gaps = 16/337 (4%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYA 86
           EG F   +SL+    +C  +   +++  + +   +   +  +  Y +        ++  A
Sbjct: 139 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMK------EGEIGVA 192

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKAC 145
             +F ++E+ N  +W  +I    ++  A+ QA+ LF  M++ G+ + P+  T    L AC
Sbjct: 193 EDLFERMEHRNIVSWTAMISGYTQNGFAE-QALGLFDEMLQDGSEMKPNWVTIVSVLPAC 251

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVS 203
           A   A  +G++ H      GL  +  +  +L   YA C  L  A   FD + +  ++L++
Sbjct: 252 AQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIA 311

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI A+   G    A+ +F  M +   +PD  TF  + S C+    +  G+  + +  
Sbjct: 312 WNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGL--NHFND 369

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRAE 321
               HS+   V     ++D+  + G L  A+++   MP +   S W +++     H   E
Sbjct: 370 MGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLE 429

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
            A     RL V E    NS  +V + +     GM  E
Sbjct: 430 IAELAARRLFVLE--PDNSGNYVLLSNLYAEAGMWEE 464



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 105/266 (39%), Gaps = 71/266 (26%)

Query: 221 LKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           L+ + RM  L    D +T   +  +CA L+ + +G   H   LR     L  D  V  SL
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRV---GLEGDFYVGASL 148

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR-------------------- 319
           IDMY KCG +  AR++F+ M  RD+ SWN++I G+   G                     
Sbjct: 149 IDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWT 208

Query: 320 -----------AEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFD--- 364
                      AE AL  FD ++ + S   PN +T V VL AC     +  GR   D   
Sbjct: 209 AMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFAN 268

Query: 365 ---VMINEYNITPVLEHYG---------CLVDLLARAGN-----------------IDEA 395
              + +N    T +   Y          C  D++A+ G                    EA
Sbjct: 269 GIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEA 328

Query: 396 LHLVSNM---PMKPDAVIWRSLLDAC 418
           + +  NM    ++PDAV +  LL  C
Sbjct: 329 VSIFENMLRAGVQPDAVTFMGLLSGC 354


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/574 (35%), Positives = 335/574 (58%), Gaps = 28/574 (4%)

Query: 50  KQIHAQALRTAL---PQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           K++HA A++  L    Q   TL+ +Y +  +      ++Y+  VF ++   +  +W T+I
Sbjct: 386 KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRY------IEYSAHVFDRMRIKDHISWTTII 439

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A+S     +A+ +F+   ++G +  D       L+AC+ L      KQ H +  + G
Sbjct: 440 TCYAQS-SRHIEALEIFREAQKEG-IKVDPMMIGSILEACSGLETILLAKQLHCYAIRNG 497

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L+ D+ + N +I  Y  CG +  + K+F+ + ++ +V+W  MI+ +   G  + AL LF 
Sbjct: 498 LL-DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFA 556

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR---HCDHSLVTDVLVNNSLID 281
            MQ    +PD     SI  A  GL++L+ G   H +++R   H + ++V+      SL+D
Sbjct: 557 EMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVS------SLVD 610

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY  CGSL  A +VF ++  +D+  W ++I    +HG  + A+  F R++ +   +P+ +
Sbjct: 611 MYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRML-QTGVTPDHV 669

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           +F+ +L AC+H  +V+EG+ Y D+M++ Y + P  EHY C+VDLL R+G  +EA   + +
Sbjct: 670 SFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKS 729

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MP+KP +V+W SLL AC + H +  L+   A +++E E     G YVL+S V+A   +WN
Sbjct: 730 MPLKPKSVVWCSLLGAC-RVHKNHELAVVAANRLLELEPD-NPGNYVLVSNVFAEMGKWN 787

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL-KSR 520
           +   VR  ++++G+ K+P CS IEI    H F   D SH   ++I   L  I E+L K  
Sbjct: 788 NAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEG 847

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GYT D +++ + D  ++ K   L  HSERLAI+ G++N +PGMP+R+ KNLRVC DCHE 
Sbjct: 848 GYTED-TRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEF 906

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           TKL+S++F+ +I+VRD  RFHHF  GSCSC D+W
Sbjct: 907 TKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 199/397 (50%), Gaps = 25/397 (6%)

Query: 29  SFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALP---QQHKTLLIYSRIIHFASFAD 82
           S N+++++   L  C  ++QL   +++HA  L++      Q +  L++Y++         
Sbjct: 263 SMNSYTTV-GVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKC------GR 315

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A RVF +I+  +  +WN+++ +C        +AI     M+ +G   PD        
Sbjct: 316 VDSALRVFREIDEKDYISWNSML-SCYVQNGLYAEAIEFISEML-RGGFQPDHACIVSLS 373

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            A  +L     GK+ HA+  K+ L SD  + N+L+  Y  C +++ +  VFD M  +  +
Sbjct: 374 SAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHI 433

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           SW  +I  + Q      AL++FR  Q    + D     SI  AC+GL T+ L    H Y 
Sbjct: 434 SWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYA 493

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +R+     + D++V N +ID+Y +CG +  + ++FE++ ++D+ +W S+I  +A  G   
Sbjct: 494 IRNG----LLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLN 549

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYG 380
            AL  F  +   +   P+S+  V +L A      +++G++    +I   +++   +    
Sbjct: 550 EALVLFAEMQSTD-VQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAI--VS 606

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            LVD+ +  G++  AL + + +  K D V+W ++++A
Sbjct: 607 SLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINA 642



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 136/293 (46%), Gaps = 20/293 (6%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLAN 190
           P +  + + L   A   A +QG Q HAH    G +   D ++   L+  Y  CG +  A 
Sbjct: 56  PPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADAR 115

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----FEPDGYTFQSITSACA 246
            +FD M  R++ SWN +I A++  G    AL ++R M++       PDG T  S+  A  
Sbjct: 116 LLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASG 175

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM-PKRDLT 305
                  G   H   ++   H L     V N+LI MY KCG LD A +VFE M   RD+ 
Sbjct: 176 VEGDGRCGCEVHGLAVK---HGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVA 232

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWNS+I G   +G    AL  F R +     S NS T VGVL  C     ++ GR+    
Sbjct: 233 SWNSMISGCLQNGMFLQALDLF-RGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAA 291

Query: 366 MI---NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++   +E NI         L+ +  + G +D AL +   +  K D + W S+L
Sbjct: 292 LLKSGSEVNI-----QCNALLVMYTKCGRVDSALRVFREIDEK-DYISWNSML 338


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 213/582 (36%), Positives = 323/582 (55%), Gaps = 20/582 (3%)

Query: 40  LTECKSMSQLKQ---IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           L  C  +S L+    +HAQ  R     +    +    I  +A    L  A  VF  +  P
Sbjct: 126 LKACGGLSHLQMGRFVHAQVFRLGF--EADVFVQNGLIALYAKCRRLGCARTVFEGLPLP 183

Query: 97  NS--FTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
                +W  ++ A A+  + +P +A+ +F +M  + +V PD       L A   L    Q
Sbjct: 184 ERTIVSWTAIVSAYAQ--NGEPVEALEIFSQM-RKMDVKPDCVALVSVLNAFTCLQDLEQ 240

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           G+  HA + K GL ++  +  SL   YA CG +  A  +FD M   +L+ WN MI  + +
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300

Query: 214 FGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G    A+ LF  M      PD  +  S  SACA + +L    W   Y+ R        D
Sbjct: 301 NGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS---DYRDD 357

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V ++++LIDM+ KCGS++ AR VF+    RD+  W+++I+G+ LHG+A  A+  + R + 
Sbjct: 358 VFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLY-RAME 416

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            +   PN +TF+G+L ACNH GMV EG  +F+ M  ++ I P  +HY C++DLL RAG++
Sbjct: 417 RDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHL 475

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           D+A  ++  MP++P   +W +LL AC KKH  V L +  A+Q+   +    +G YV LS 
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSAC-KKHRHVELGKYAAQQLFSIDPS-NTGHYVQLSN 533

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA+AR W+ V  VR  M +KG+ K+ GCS +E+ G    F  GD SHP+ ++I   ++ 
Sbjct: 534 LYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEW 593

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           I+ +LK  G+  +   A++ D  D+  + +L  HSER+ IA G+++   G  +R+ KNLR
Sbjct: 594 IESRLKEGGFVAN-KDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLR 652

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            C +CH  TKLIS++   EI+VRD  RFHHFKDG CSC DYW
Sbjct: 653 ACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 203/386 (52%), Gaps = 16/386 (4%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           ++SL+ S T     +QL+QIHA+ L   L  Q    LI   I   +S+ D+ +A +VF  
Sbjct: 24  YASLIDSSTH---KAQLRQIHARLLVLGL--QFSGFLITKLIHASSSYGDITFARQVFDD 78

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +  P  F WN +IR  +R+ +    A++++ +M +   V PD  TFP  LKAC  L    
Sbjct: 79  LPRPQVFPWNAIIRGYSRN-NHFQDALLMYSKM-QLARVSPDSFTFPHLLKACGGLSHLQ 136

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDA 210
            G+  HA +F+ G  +DV++ N LI  YA C  L  A  VF+   + ER++VSW  ++ A
Sbjct: 137 MGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSA 196

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q GE   AL++F +M+ +  +PD     S+ +A   L  L  G   HA +++     L
Sbjct: 197 YAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK---MGL 253

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            T+  +  SL  MY KCG +  A+ +F+ M   +L  WN++I G+A +G A+ A+  F  
Sbjct: 254 ETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHE 313

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           + + +   P++I+    +SAC   G + + R + D  ++  +    +     L+D+ A+ 
Sbjct: 314 M-INKDVRPDTISITSAISACAQVGSLEQAR-WMDEYVSRSDYRDDVFISSALIDMFAKC 371

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLL 415
           G++ E    V +  +  D V+W +++
Sbjct: 372 GSV-ECARSVFDRTLDRDVVVWSAMI 396


>gi|297792411|ref|XP_002864090.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309925|gb|EFH40349.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/494 (39%), Positives = 296/494 (59%), Gaps = 45/494 (9%)

Query: 156 QAHAHIFKRG-------LVSDV---------YINNSLIHFYAS----------------- 182
           QAHAHIFK G       LVS V         Y+   L+ ++ S                 
Sbjct: 51  QAHAHIFKLGYGTYPSLLVSTVAAYRRCNRSYLARRLLLWFLSLSPGVCNTNLIIESLVK 110

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQS 240
            G   LA KV  N  ++++++WN+MI  +V+  +++ ALK  + M     F+P+ ++F S
Sbjct: 111 IGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKPNKFSFAS 170

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             +ACA L  L    W H+ ++   D  +  + +++++L+D+Y KCG ++ +R+VF S+ 
Sbjct: 171 SLAACARLGDLHHAKWVHSLMI---DGGIEFNAILSSALVDVYAKCGDIETSREVFCSVK 227

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + D++ WN++I GFA HG A  A++ F  +  E   SP+SITF+G+L+AC+H G++ EG+
Sbjct: 228 RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEH-VSPDSITFLGLLTACSHCGLLEEGK 286

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           +YF +M   ++I P LEHYG +VDLL RAG + EA  L+ +MP++PD VIWRSLL +   
Sbjct: 287 EYFGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLLSS--- 343

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
             +    + E+ +  I++     SG YVLLS +Y+S ++W     VR+LMT +G+ K  G
Sbjct: 344 --SRTFKNPELGEIAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMTKEGIRKAKG 401

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S +E  G+ H F AGDTSH +TK IY  L+ + +K KS G+  D +   ++D  ++ K+
Sbjct: 402 KSWVEFGGVIHRFKAGDTSHIETKAIYKVLEGLIQKTKSEGFVSD-TDLVLMDVSEEEKE 460

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +L  HSE+LA+A  IL   PG  IR+ KN+R+C DCH   K +S++ N  I +RDR RF
Sbjct: 461 ENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVITMRDRIRF 520

Query: 601 HHFKDGSCSCMDYW 614
           H F+DG CSC DYW
Sbjct: 521 HRFEDGLCSCKDYW 534



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +V     + N  TWN +I    R+V  + +A+   + M+   +  P+K +F  +L AC
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYE-EALKTLKNMLSFSDFKPNKFSFASSLAAC 175

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L      K  H+ +   G+  +  ++++L+  YA CG ++ + +VF ++    +  WN
Sbjct: 176 ARLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSREVFCSVKRNDVSIWN 235

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  F   G    A+++F  M+     PD  TF  + +AC+    L  G      + R 
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLEEGKEYFGLMSRR 295

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
              S+   +    +++D+  + G +  A ++ ESMP + D+  W S++
Sbjct: 296 --FSIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLL 341


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 219/637 (34%), Positives = 333/637 (52%), Gaps = 78/637 (12%)

Query: 45  SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
           S  +L+QIH Q  R  +    + +  +  I   +S   +DYA  +F + E  NS+ +N L
Sbjct: 54  STHKLRQIHGQLYRCNVFSSSRVVTQF--ISSCSSLNSVDYAISIFQRFELKNSYLFNAL 111

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           IR  A   +++ ++ + F  ++ +  + PD+ TFPF LK+ A L     G+  H  I K 
Sbjct: 112 IRGLAE--NSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKF 169

Query: 165 GLVSD-----------------------------------VYINNSLIHFYASCGHLDLA 189
           GL  D                                   V I N LIH Y   G L  A
Sbjct: 170 GLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKA 229

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---------------------- 227
            ++FD+M ++   SWN +I+ F++ G+   A +LF +M                      
Sbjct: 230 TELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPE 289

Query: 228 ---QILF-------EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
              +  F        P+ YT  S  SACA +  L  G+  H Y+     +    ++++  
Sbjct: 290 KALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYL---SGNGFKLNLVIGT 346

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+DMY KCG+++ A +VF    ++ L  W+ +I G+A+HG    AL+YF+ +    +  
Sbjct: 347 ALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGT-K 405

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P+S+ F+ VL+AC+H G V+EG  +FD M   Y I P ++HY  +VD+L RAG +DEAL 
Sbjct: 406 PDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALK 465

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
            +  MP+ PD V+W +L  AC + H +V ++E  +K++++ E     G YV LS  YAS 
Sbjct: 466 FIRAMPITPDFVVWGALFCAC-RTHKNVEMAELASKKLLQLEPK-HPGSYVFLSNAYASV 523

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            RW+D   VR  M D G  K+PG S IE+D   H F AGD +H +  +IY  LD I    
Sbjct: 524 GRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASA 583

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           + +GYT +  +  + +  ++ K+ +L  HSE+LA+A GI++ +PG  +R+ KNLRVC DC
Sbjct: 584 REKGYTKEI-ECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDC 642

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H   K  S++   EII+RD  RFHHF DG CSC DYW
Sbjct: 643 HSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 325/565 (57%), Gaps = 12/565 (2%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           QIHA A++  L    +  +  S +  +A F  + Y   +F ++ + +  +W T+I   A+
Sbjct: 440 QIHAYAMKNGLDSDLQ--VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 497

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
           +  +  +A+ LF+ +  +G  L D       L AC+ L   S  K+ H++I ++GL SD+
Sbjct: 498 N-GSHSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDL 554

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QI 229
            + N ++  Y  CG++D A ++F+ +  + +VSW  MI  +V  G  + AL+LF  M + 
Sbjct: 555 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 614

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
             EPD  +  SI SA A L+ L  G   H +++R      V +  + ++L+DMY +CG+L
Sbjct: 615 GVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK---GFVLEGSLASTLVDMYARCGTL 671

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + +R VF  +  +DL  W S+I  + +HG   AA+  F R+  +ES +P+ I FV VL A
Sbjct: 672 EKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRME-DESIAPDHIAFVAVLYA 730

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C+H G+++EGR + + M  EY + P  EHY CLVDLL RA +++EA   V  M ++P A 
Sbjct: 731 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAE 790

Query: 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
           +W +LL AC + H++  L E  A++++E +     G YVL+S VYA+ RRW DV  VR  
Sbjct: 791 VWCALLGAC-QIHSNKELGEIAAQKLLEMDPE-NPGNYVLVSNVYAAERRWKDVEEVRMR 848

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529
           M   G+ K PGCS IE+    H F A D SHPQ+ +IY  L  I EKL   G     ++ 
Sbjct: 849 MKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKF 908

Query: 530 AMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
            + +  ++ K   L  HSERLAIA G+L    G  +R+ KNLRVC DCH   KLIS+ F 
Sbjct: 909 VLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFE 968

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            E+++RD  RFHHFK G CSC D W
Sbjct: 969 RELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 11/280 (3%)

Query: 142 LKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           L+ C    A S+G+Q HAH I    L + V+++  L+  Y  CG L  A K+FD M  ++
Sbjct: 121 LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKT 180

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHA 259
           + +WN MI A+V  GE   +L+L+R M++   P D  TF  I  AC  L     G   H 
Sbjct: 181 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHG 240

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHG 318
             ++      V+ V V NS++ MY KC  L+ ARQ+F+ MP K D+ SWNS+I  ++ +G
Sbjct: 241 LAIK---EGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR-DYFDVMINEYNITPVLE 377
           ++  AL+ F  +  + S +PN+ TFV  L AC     + +G   +  V+ + Y I   + 
Sbjct: 298 QSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 356

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +   L+ + AR G + EA ++  NM    D + W S+L  
Sbjct: 357 N--ALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 393



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 182/385 (47%), Gaps = 11/385 (2%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           +SS+L      K++S+ +Q+HA  + T+    +   L    +  +     L  A ++F  
Sbjct: 117 YSSVLELCGSKKALSEGQQVHAHMI-TSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           + +   FTWN +I A     + +P   +   R +    +  D  TFP  LKAC  L    
Sbjct: 176 MPHKTIFTWNAMIGAYV--TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRR 233

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-LVSWNVMIDAF 211
            G + H    K G VS V++ NS++  Y  C  L+ A ++FD M E+  +VSWN MI A+
Sbjct: 234 CGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 293

Query: 212 VQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G+   AL+LF  MQ     P+ YTF +   AC   + +  GM+ HA +L+    S  
Sbjct: 294 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK---SSYY 350

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +V V N+LI MY + G +  A  +F +M   D  SWNS++ GF  +G    AL+++  +
Sbjct: 351 INVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM 410

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
             +    P+ +  + +++A    G    G       +    +   L+    LVD+ A+  
Sbjct: 411 -RDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN-GLDSDLQVGNSLVDMYAKFC 468

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
           ++     +   MP K D V W +++
Sbjct: 469 SMKYMDCIFDKMPDK-DVVSWTTII 492



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 173/336 (51%), Gaps = 11/336 (3%)

Query: 82  DLDYAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           DL+ A ++F ++ E  +  +WN++I A + S     +A+ LF  M ++ ++ P+ +TF  
Sbjct: 266 DLNGARQLFDRMPEKEDVVSWNSMISAYS-SNGQSIEALRLFGEM-QKASLAPNTYTFVA 323

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
           AL+AC       QG   HA + K     +V++ N+LI  YA  G +  A  +F NM +  
Sbjct: 324 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHA 259
            +SWN M+  FVQ G +  AL+ +  M+   + PD     SI +A A       GM  HA
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           Y ++   + L +D+ V NSL+DMY K  S+     +F+ MP +D+ SW +II G A +G 
Sbjct: 444 YAMK---NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              AL+ F R V  E    + +    +L AC+   ++S  ++    +I +     VL++ 
Sbjct: 501 HSRALELF-REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN- 558

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             +VD+    GN+D A  +   +  K D V W S++
Sbjct: 559 -GIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI 592


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/486 (40%), Positives = 294/486 (60%), Gaps = 16/486 (3%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           P +  F   +   AY+   S+ + A A  +F    + D+   N++IH YA  G + LA +
Sbjct: 19  PLRDVFLCNVMLAAYV---SRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLARE 75

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           +FD   +R   SW+ MI A+ +      AL+L+R M      PD  T  S+ SAC+ L  
Sbjct: 76  IFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGA 135

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L++G   H ++     + +  D+ +  +LIDMY KCG ++ A++VF+ MP++D+ +W+S+
Sbjct: 136 LAVGAEVHRFVE---SNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSM 192

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G A HG    +L  F +++  E   PN +TFVGVL AC H G+VSEG+ YF  M   +
Sbjct: 193 IIGLANHGLGHESLSLFSKMI-SEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVH 251

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            I P +EHYGC+VDLL R+G+++EA  L+ +M  +PD +IWR+LL A C+ H +V ++EE
Sbjct: 252 GIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGA-CRIHKNVEIAEE 310

Query: 431 -VAK-QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
            +AK +V++  G    G YVLLS +YA A  W  V  +RK +    + + PG SSIE D 
Sbjct: 311 AMAKLRVLDPLG---DGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDE 367

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
             HEF +GD  HP++K+IY  L+ + ++LK  GY P  +   + D  +  K+ SL  HSE
Sbjct: 368 KIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKP-MTGLVLQDIDEQSKERSLAEHSE 426

Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
           +LAIA  +L       IR+ KNLR C+DCH   KLIS +++ ++IVRDR RFHHF +G C
Sbjct: 427 KLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQC 486

Query: 609 SCMDYW 614
           SC DYW
Sbjct: 487 SCKDYW 492



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 136/271 (50%), Gaps = 9/271 (3%)

Query: 66  KTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR 124
           + L+ ++ +IH +A   ++  A  +F   E+ ++F+W+++I A A+S  +K +A+ L++ 
Sbjct: 52  RDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSK-EALELWRE 110

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M    +++PD  T    + AC+ L A + G + H  +    +  D+ +  +LI  YA CG
Sbjct: 111 M-HAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCG 169

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            ++ A +VFD M E+ + +W+ MI      G    +L LF +M     +P+G TF  +  
Sbjct: 170 DIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLI 229

Query: 244 ACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-K 301
           AC  +  +S G     Y     + H +   V     ++D+  + G ++ ARQ+  SM  +
Sbjct: 230 ACTHVGLVSEG---KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFE 286

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            D   W +++    +H   E A +   +L V
Sbjct: 287 PDTIIWRALLGACRIHKNVEIAEEAMAKLRV 317



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 35/221 (15%)

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           D + + DV + N ++  Y     +  AR+VF+ MP RDL SWN++I G+A+ G    A +
Sbjct: 16  DEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLARE 75

Query: 326 YFDRLVVEESFS------------------------------PNSITFVGVLSACNHRGM 355
            FD     ++FS                              P+ IT V V+SAC+  G 
Sbjct: 76  IFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGA 135

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++ G +     +    I   L+    L+D+ A+ G+I+ A  +   MP K D   W S++
Sbjct: 136 LAVGAEVHR-FVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEK-DVQTWSSMI 193

Query: 416 DACCK---KHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
                    H S+ L  ++  + ++  G    GV +  + V
Sbjct: 194 IGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHV 234


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 326/587 (55%), Gaps = 25/587 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQALR---TALPQQHKTLLIYSRIIHFASFADLDYA-FRVFY 91
           +L   T  +S+ +  Q+H Q ++    A+P      L+   +I+F S  +L ++  ++F 
Sbjct: 13  VLVWFTHTRSLRKGLQLHGQVIKLGFEAIP------LVCHHLINFYSKTNLPHSSLKLFD 66

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
              + ++ TW+++I + A++ D    A+  F+RM+  G +LPD HT P A K+ A L + 
Sbjct: 67  SFPHKSATTWSSVISSFAQN-DLPLPALRFFRRMLRHG-LLPDDHTLPTAAKSVAALSSL 124

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
                 HA   K     DV++ +SL+  YA CG ++LA KVFD M  +++VSW+ MI  +
Sbjct: 125 PLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGY 184

Query: 212 VQFGEFDSALKLFRR---MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            Q G  + AL LF+R          + +T  S+   C+      LG   H    +    S
Sbjct: 185 SQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKT---S 241

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
             +   V +SLI +Y KCG ++   +VFE +  R+L  WN++++  A H       + F+
Sbjct: 242 FDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFE 301

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +       PN ITF+ +L AC+H G+V +G   F +M  E+ I P  +HY  LVDLL R
Sbjct: 302 EME-RVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGR 359

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG ++EA+ ++  MPM+P   +W +LL  C + H +  L+  VA +V E  G + SG+ V
Sbjct: 360 AGKLEEAVLVIKEMPMQPTESVWGALLTGC-RIHGNTELASFVADKVFEM-GAVSSGIQV 417

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS  YA+A RW +    RK+M D+G+ KE G S +E     H F AGD SH +T++IY 
Sbjct: 418 LLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYE 477

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGMPIRV 567
            L+ + E++   GY  D S   ++ E+D D K  ++R HSERLAIA G++   P  PIRV
Sbjct: 478 KLEELGEEMAKAGYVADTS--FVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRV 535

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLRVC DCH   K IS+     IIVRD  RFH F+DG C+C DYW
Sbjct: 536 MKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 582


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 341/628 (54%), Gaps = 53/628 (8%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRIIHFASFA 81
           R+E    N  +++  ++ C  +  L+   +++A    + +  +   L++ + +  +    
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGI--EVNDLMVSALVDMYMKCN 285

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            +D A R+F +    N    N +     R    + +A+ +F  M++ G V PD+ +   A
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR-EALGVFNLMMDSG-VRPDRISMLSA 343

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           + +C+ L     GK  H ++ + G  S   I N+LI  Y  C   D A ++FD M  +++
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQ-----------------ILFE------------ 232
           V+WN ++  +V+ GE D+A + F  M                   LFE            
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 233 ----PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                DG T  SI SAC  L  L L  W + YI ++    +  DV +  +L+DM+ +CG 
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN---GIQLDVRLGTTLVDMFSRCGD 520

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
            + A  +F S+  RD+++W + I   A+ G AE A++ FD ++ E+   P+ + FVG L+
Sbjct: 521 PESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMI-EQGLKPDGVAFVGALT 579

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC+H G+V +G++ F  M+  + ++P   HYGC+VDLL RAG ++EA+ L+ +MPM+P+ 
Sbjct: 580 ACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND 639

Query: 409 VIWRSLLDACCKKHASVVLSEEVAK--QVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           VIW SLL A C+   +V ++   A+  QV+  E    +G YVLLS VYASA RWND+  V
Sbjct: 640 VIWNSLL-AACRVQGNVEMAAYAAEKIQVLAPER---TGSYVLLSNVYASAGRWNDMAKV 695

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           R  M +KG+ K PG SSI+I G  HEF +GD SHP+   I   LD + ++    G+ PD 
Sbjct: 696 RLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDL 755

Query: 527 SQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
           S   M VDE +  K   L  HSE+LA+A G+++   G  IR+ KNLRVC DCH   K  S
Sbjct: 756 SNVLMDVDEKE--KIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFAS 813

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDY 613
           +++N EII+RD  RFH+ + G CSC D+
Sbjct: 814 KVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 193/386 (50%), Gaps = 20/386 (5%)

Query: 38  SSLTECKSMSQLKQIHAQALRTALPQQHKTLL-IYSRIIHFASFADLDYAFRVFYQIENP 96
           SSL  CK++ +LK  H    +  L     T+  + +R     +   L +A  VF   E+ 
Sbjct: 37  SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESY 96

Query: 97  NS-FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            + F +N+LIR  A S     +AI+LF RM+  G + PDK+TFPF L ACA   A   G 
Sbjct: 97  GTCFMYNSLIRGYASSGLCN-EAILLFLRMMNSG-ISPDKYTFPFGLSACAKSRAKGNGI 154

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H  I K G   D+++ NSL+HFYA CG LD A KVFD M ER++VSW  MI  + +  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 216 EFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
               A+ LF RM    E  P+  T   + SACA L  L  G   +A+I        V D+
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE--VNDL 272

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           +V ++L+DMY KC ++D+A+++F+     +L   N++   +   G    AL  F+ L+++
Sbjct: 273 MV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN-LMMD 330

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARA 389
               P+ I+ +  +S+C+    +  G+       + Y +    E +      L+D+  + 
Sbjct: 331 SGVRPDRISMLSAISSCSQLRNILWGKS-----CHGYVLRNGFESWDNICNALIDMYMKC 385

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLL 415
              D A  +   M  K   V W S++
Sbjct: 386 HRQDTAFRIFDRMSNKT-VVTWNSIV 410


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 328/586 (55%), Gaps = 28/586 (4%)

Query: 40  LTECKSMSQLKQ---IHAQALRTALPQ----QHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           L  C  +S L+    +HAQ  R         Q+  + +Y++     S      A  VF  
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS------ARTVFEG 179

Query: 93  IENPNS--FTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           +  P     +W  ++ A A+  + +P +A+ +F +M  + +V PD       L A   L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQ--NGEPMEALEIFSQM-RKMDVKPDWVALVSVLNAFTCLQ 236

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
              QG+  HA + K GL  +  +  SL   YA CG +  A  +FD M   +L+ WN MI 
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 210 AFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + + G    A+ +F  M      PD  +  S  SACA + +L      + Y+ R  D+ 
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGR-SDYR 355

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
              DV ++++LIDM+ KCGS++ AR VF+    RD+  W+++I+G+ LHGRA  A+  + 
Sbjct: 356 --DDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY- 412

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           R +      PN +TF+G+L ACNH GMV EG  +F+ M  ++ I P  +HY C++DLL R
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGR 471

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           AG++D+A  ++  MP++P   +W +LL AC KKH  V L E  A+Q+   +    +G YV
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSAC-KKHRHVELGEYAAQQLFSIDPS-NTGHYV 529

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
            LS +YA+AR W+ V  VR  M +KG+ K+ GCS +E+ G    F  GD SHP+ ++I  
Sbjct: 530 QLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIER 589

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            ++ I+ +LK  G+  +   A++ D  D+  + +L  HSER+AIA G+++   G P+R+ 
Sbjct: 590 QVEWIESRLKEGGFVAN-KDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRIT 648

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KNLR C +CH  TKLIS++ + EI+VRD  RFHHFKDG CSC DYW
Sbjct: 649 KNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 205/387 (52%), Gaps = 18/387 (4%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           ++SL+ S T     +QLKQIHA+ L   L  Q    LI   I   +SF D+ +A +VF  
Sbjct: 24  YASLIDSATH---KAQLKQIHARLLVLGL--QFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +  P  F WN +IR  +R+ +    A++++  M +   V PD  TFP  LKAC+ L    
Sbjct: 79  LPRPQIFPWNAIIRGYSRN-NHFQDALLMYSNM-QLARVSPDSFTFPHLLKACSGLSHLQ 136

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDA 210
            G+  HA +F+ G  +DV++ N LI  YA C  L  A  VF+   + ER++VSW  ++ A
Sbjct: 137 MGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q GE   AL++F +M+ +  +PD     S+ +A   L  L  G   HA +++     +
Sbjct: 197 YAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK-MGLEI 255

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D+L+  SL  MY KCG +  A+ +F+ M   +L  WN++I G+A +G A  A+  F  
Sbjct: 256 EPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHE 313

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD-VMINEYNITPVLEHYGCLVDLLAR 388
           + + +   P++I+    +SAC   G + + R  ++ V  ++Y     +     L+D+ A+
Sbjct: 314 M-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAK 370

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G++ E   LV +  +  D V+W +++
Sbjct: 371 CGSV-EGARLVFDRTLDRDVVVWSAMI 396


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/535 (36%), Positives = 301/535 (56%), Gaps = 14/535 (2%)

Query: 83  LDYAFRVFYQIENPNSFT--WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           +D A +VF +  +    T  +N L+     +     +A++LF++M E+G V  +  T   
Sbjct: 100 VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS-EAVLLFRQMNEEG-VPVNSVTLLG 157

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            + AC        G   H    K G  SDV + N  I  Y  CG ++ A K+FD M  + 
Sbjct: 158 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 217

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           L+SWN M+  + Q G   + L+L+R M +    PD  T   + S+CA L   S+G   H 
Sbjct: 218 LISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG---HE 274

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
              +       ++  +NN+LI+MY +CG+L  A+ VF+ MP+R L SW +II G+ +HG 
Sbjct: 275 VEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 334

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            E A++ F  ++      P+   FV VLSAC+H G+  +G +YF +M   Y + P  EHY
Sbjct: 335 GEIAVQLFKEMI-RSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 393

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL RAG + EA  L+ +MP+KPD  +W +LL A CK H +V L+E   ++VIE E
Sbjct: 394 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA-CKIHKNVELAELAFERVIELE 452

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
                G YVLLS +Y++A     V  +R +M +K + K+PGCS +E+ G  H F  GD +
Sbjct: 453 PENI-GYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRN 511

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           H Q+ +IY  L+ ++  +      P+       +E +    + + +HSE+LA+A G+LN 
Sbjct: 512 HLQSDEIYRVLEELEAIIMQEFGKPEKDNR---EESNKDGFTRVGVHSEKLAVAFGLLNT 568

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G  + + KNLR+C+DCH   K++S+I + ++ VRD  RFHHF++GSCSC DYW
Sbjct: 569 TTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 193/393 (49%), Gaps = 21/393 (5%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           N  S  WNT +R  A+      QA+ L+ +M+  G+  P+  TFPFALK+CA L     G
Sbjct: 11  NALSTPWNTQLRELAKRCQFL-QALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILG 68

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF-DNMLERSL-VSWNVMIDAFV 212
            Q H  I K G V + ++   LI  Y     +D A KVF +N   R L V +N ++  +V
Sbjct: 69  SQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYV 128

Query: 213 QFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
              +   A+ LFR+M     P +  T   +  AC     L LG   H   L+   +   +
Sbjct: 129 SNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK---YGFDS 185

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V N  I MY KCGS++ A+++F+ MP + L SWN+++ G+A +G A   L+ +  + 
Sbjct: 186 DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 245

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDY-FDVMINEYNITPVLEHYGCLVDLLARAG 390
           +     P+ +T VGVLS+C + G  S G +  F +  + +   P L +   L+++ AR G
Sbjct: 246 M-NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCG 302

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDAC---CKKHASVVLSEEVAKQVIESEGGICSGVY 447
           N+ +A  +   MP +   V W +++           +V L +E+ +  IE +G   + V 
Sbjct: 303 NLTKAQAVFDGMPER-TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG--TAFVC 359

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
           VL +  +A      D GL    M  +    EPG
Sbjct: 360 VLSACSHAG---LTDQGLEYFKMMKRNYQLEPG 389


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 345/618 (55%), Gaps = 49/618 (7%)

Query: 34   SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
            ++LL+     ++ +Q +QIHA  +R  +    K +++ + ++H ++    L+YA  +F +
Sbjct: 483  TTLLTLCANQRNDNQGRQIHAHLIRANIT---KNIIVETELVHMYSECGRLNYAKEIFNR 539

Query: 93   IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
            +   N+++WN++I    ++ + + +A+ LF++M   G + PD  +    L +C  L    
Sbjct: 540  MAERNAYSWNSMIEGYQQNGETQ-EALRLFKQMQLNG-IKPDCFSLSSMLSSCVSLSDSQ 597

Query: 153  QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
            +G++ H  I +  +  +  +   L+  YA CG +D A KV+D  +++ ++  NVM+ AFV
Sbjct: 598  KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFV 657

Query: 213  QFGEFDSALKLFRRMQ---------IL-----------------------FEPDGYTFQS 240
              G  + A  LF +M+         IL                        E D  T  +
Sbjct: 658  NSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 717

Query: 241  ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
            I + C+ L  L  G   H+ I++     +   V++  +L+DMY KCG++  AR VF++M 
Sbjct: 718  IVNLCSSLPALEHGDQLHSLIIKK--GFVNCSVVLETALVDMYSKCGAITKARTVFDNMN 775

Query: 301  KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
             +++ SWN++I G++ HG ++ AL  ++ +  ++   PN +TF+ +LSAC+H G+V EG 
Sbjct: 776  GKNIVSWNAMISGYSKHGCSKEALILYEEMP-KKGMYPNEVTFLAILSACSHTGLVEEGL 834

Query: 361  DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              F  M  +YNI    EHY C+VDLL RAG +++A   V  MP++P+   W +LL AC +
Sbjct: 835  RIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGAC-R 893

Query: 421  KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
             H  + +    A+++ E +     G YV++S +YA+A RW +V  +R++M  KGV K+PG
Sbjct: 894  VHKDMDMGRLAAQRLFELDPQ-NPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPG 952

Query: 481  CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
             S IEI+     F AG  +HP+T++IY  L  +  + K  GY PD S   ++  + D K+
Sbjct: 953  VSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTS--FILQNVKDIKE 1010

Query: 541  SS----LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
                  L  HSERLA++LG+++L     IRVFKNLR+C DCH  TK IS+I    II RD
Sbjct: 1011 EEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARD 1070

Query: 597  RARFHHFKDGSCSCMDYW 614
              RFHHF++G CSC DYW
Sbjct: 1071 TNRFHHFENGKCSCGDYW 1088



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/403 (30%), Positives = 214/403 (53%), Gaps = 15/403 (3%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTEC---KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           ++   R  G+F++  +  S +  C   + M  ++Q+ +  ++  L   +  L +   ++ 
Sbjct: 162 LYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGL---NCNLFVGGALVD 218

Query: 77  -FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A F  +D A     +IE  +  TWN +I    + + +  +A  +F RM++ G V PD 
Sbjct: 219 GYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK-ILSWEEAWGIFDRMLKIG-VCPDN 276

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            TF  AL+ C  L +   GKQ H+ +   G   D ++ N+LI  YA C   +   KVFD 
Sbjct: 277 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 336

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLG 254
           M ER+ V+WN +I A  QFG F+ AL LF RMQ   ++ + +   SI  A AGLA +  G
Sbjct: 337 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKG 396

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
              H +++R+    L +D+++ ++L+DMY KCG ++ A QVF S+ +R+  S+N+++ G+
Sbjct: 397 RELHGHLVRNL---LNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
              G+AE AL+ +  +  E+   P+  TF  +L+ C ++   ++GR     +I   NIT 
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITK 512

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            +     LV + +  G ++ A  + + M  + +A  W S+++ 
Sbjct: 513 NIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEG 554



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 216/443 (48%), Gaps = 53/443 (11%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           N  S+L +      + + +++H   +R  L      +L  + +  ++    ++ A +VF 
Sbjct: 379 NLGSILMASAGLADIGKGRELHGHLVRNLL--NSDIILGSALVDMYSKCGMVEEAHQVFR 436

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +   N  ++N L+    +   A+ +A+ L+  M  +  + PD+ TF   L  CA     
Sbjct: 437 SLLERNEVSYNALLAGYVQEGKAE-EALELYHDMQSEDGIQPDQFTFTTLLTLCANQRND 495

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           +QG+Q HAH+ +  +  ++ +   L+H Y+ CG L+ A ++F+ M ER+  SWN MI+ +
Sbjct: 496 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 555

Query: 212 VQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q GE   AL+LF++MQ+   +PD ++  S+ S+C  L+    G   H +I+R   +++ 
Sbjct: 556 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR---NTME 612

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            + ++   L+DMY KCGS+D A +V++   K+D+   N ++  F   GRA  A   FD++
Sbjct: 613 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQM 672

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNI------------TPV 375
               +   NSI     L+   ++G+  E  ++F  M+    EY++             P 
Sbjct: 673 EQRNTALWNSI-----LAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727

Query: 376 LEH-------------YGC-------LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           LEH               C       LVD+ ++ G I +A  +  NM  K + V W +++
Sbjct: 728 LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGK-NIVSWNAMI 786

Query: 416 DA----CCKKHASVVLSEEVAKQ 434
                  C K A ++L EE+ K+
Sbjct: 787 SGYSKHGCSKEA-LILYEEMPKK 808



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 218/463 (47%), Gaps = 28/463 (6%)

Query: 9   GPPTPQ-THSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQH- 65
           GP +P+ T  H+   ++ N   +   SSL+    +  S  + K IH Q +     P  + 
Sbjct: 52  GPDSPKPTSIHTKPASDVNPLPY---SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYL 108

Query: 66  --KTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
             K L++Y+R        DL YA ++F ++   N   WNT+I A AR VD   + + L+ 
Sbjct: 109 MTKILMLYARS---GCLDDLCYARKLFEEMPERNLTAWNTMILAYAR-VDDYMEVLRLYG 164

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
           RM   GN   DK TFP  +KAC  +      +Q  + + K GL  ++++  +L+  YA  
Sbjct: 165 RMRGSGN-FSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARF 223

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSIT 242
           G +D A    D +   S+V+WN +I  +V+   ++ A  +F RM +I   PD +TF S  
Sbjct: 224 GWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASAL 283

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
             C  L +   G   H+ ++  C      D  V N+LIDMY KC   +   +VF+ M +R
Sbjct: 284 RVCGALRSRDGGKQVHSKLIA-C--GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGER 340

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           +  +WNSII   A  G    AL  F R+  E  +  N      +L A      + +GR+ 
Sbjct: 341 NQVTWNSIISAEAQFGHFNDALVLFLRM-QESGYKSNRFNLGSILMASAGLADIGKGREL 399

Query: 363 FDVMI-NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
              ++ N  N   +L     LVD+ ++ G ++EA H V    ++ + V + +LL    ++
Sbjct: 400 HGHLVRNLLNSDIILG--SALVDMYSKCGMVEEA-HQVFRSLLERNEVSYNALLAGYVQE 456

Query: 422 HASVVLSEEVAK--QVIESEGGICSGVYVLLSRVYASARRWND 462
                 +EE  +    ++SE GI    +   + +   A + ND
Sbjct: 457 GK----AEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRND 495



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 167/399 (41%), Gaps = 41/399 (10%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAK------PQAIVLFQRMIEQGNVLPDKHTFPFA 141
           R F+ + NPNS +++        ++  K      P+   +  +     N LP    +   
Sbjct: 22  RHFFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLP----YSSL 77

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---LANKVFDNMLE 198
           ++ C    +F +GK  H  +   G   D Y+   ++  YA  G LD    A K+F+ M E
Sbjct: 78  IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPE 137

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWA 257
           R+L +WN MI A+ +  ++   L+L+ RM+      D +TF S+  AC  +  +      
Sbjct: 138 RNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQL 197

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
            + +++     L  ++ V  +L+D Y + G +D A    + +    + +WN++I G+   
Sbjct: 198 QSSVVK---AGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITPVL 376
              E A   FDR+ ++    P++ TF   L  C        G+     +I   +     +
Sbjct: 255 LSWEEAWGIFDRM-LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 313

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436
            +   L+D+ A+  + +  L +   M  + + V W S++ A                   
Sbjct: 314 GN--ALIDMYAKCDDEESCLKVFDEMGER-NQVTWNSIISA------------------- 351

Query: 437 ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475
           E++ G  +   VL  R+  S  + N   L   LM   G+
Sbjct: 352 EAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGL 390


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/566 (37%), Positives = 317/566 (56%), Gaps = 20/566 (3%)

Query: 55  QALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           QA R       K +  ++ ++H +  F  +D A ++F Q+   N  +W T+I  C    +
Sbjct: 146 QAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMI--CGLDQN 203

Query: 114 AKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
            +  +A+ LF+ M+ +  +     TF   + ACA   AF  G Q H  I K G + + Y+
Sbjct: 204 ERSGEALNLFKNML-RCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYV 262

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---QI 229
             SLI  YA+C   + + KVF  M+   +  W  ++  +    + + AL +F  M    I
Sbjct: 263 TASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSI 322

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
           L  P+  TF S  ++C+ L TL  G   H   ++     L T   V NSL+ MY   G++
Sbjct: 323 L--PNQSTFASGLNSCSALGTLDWGKEIHGVAVKL---GLGTVAFVGNSLVVMYSDSGNV 377

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + A  VF  + K+ + SWNSII+G A HGR + A   F +++   +  P+ ITF G+LSA
Sbjct: 378 NDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMI-RLNKEPDEITFTGLLSA 436

Query: 350 CNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           C+H G + +GR  F  + +  N I   ++HY C+VD+L R G + EA  L+ +M +KP+ 
Sbjct: 437 CSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNE 496

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
           ++W +LL AC + H+ V   E+ A  +   +    S  YVLLS +YASA RW+ V  +R 
Sbjct: 497 MVWLALLSAC-RMHSDVDRGEKAAAAIFNLDSK-SSAAYVLLSNIYASAGRWSSVSKLRV 554

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
            M  KG+ K+PG S + I G  HEFF+GD   P   +I+  L+ + EKLK  GY PDY +
Sbjct: 555 KMKQKGIMKKPGSSWVVIRGKKHEFFSGD--RPHCLRIFEKLEFLREKLKELGYVPDY-R 611

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
           +A+ D  D+ K+  L  HSERLAIA G++N   G  + V KNLRVC+DCH V KLISR+ 
Sbjct: 612 SALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKLISRVV 671

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
             +I++RD  RFHHFK+G CSC DYW
Sbjct: 672 GCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 179/411 (43%), Gaps = 57/411 (13%)

Query: 45  SMSQLKQIHAQALRT---ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTW 101
           SMS +  IH ++ R+    +  Q++ +LI + +++      LD A  VF Q+ +P+   +
Sbjct: 16  SMSHV--IHGKSFRSYSVTVEFQNREVLICNHLLN----RRLDEAREVFDQVPSPHVSLY 69

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
             +I    RS +    A+ LF  M      L D  ++   +  C          +    +
Sbjct: 70  TKMISGYTRS-NRLVDALNLFDEM-----PLRDVVSWNSMISGCVECGDIDTAVKMFDEM 123

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            +R +VS   + N    F    G +D A ++F  M  + + +WN M+  ++QFG+ D AL
Sbjct: 124 PERSVVSWTAMVNGCFRF----GMVDQAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDAL 179

Query: 222 KLFRRM--------------------------------QILFEPDGYTFQSITSACAGLA 249
           KLF++M                                +   +    TF  + +ACA   
Sbjct: 180 KLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAP 239

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
              +G   H +I++      + +  V  SLI +Y  C   + +R+VF  M    +  W +
Sbjct: 240 AFHMGTQVHGFIIK---SGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTA 296

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           ++ G++L+ + E AL  F  + +  S  PN  TF   L++C+  G +  G++   V + +
Sbjct: 297 LLSGYSLNRKHEDALNVFSEM-IRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAV-K 354

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             +  V      LV + + +GN+++A+ +   +  K   V W S++  C +
Sbjct: 355 LGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQ 404



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           D   + DV+  NS+I    +CG +D A ++F+ MP+R + SW +++ G    G  + A +
Sbjct: 90  DEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAER 149

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM--INEYNITPVLEHYGCLV 383
            F ++ V++  + N++   G L      G V +    F  M   N  + T ++    C +
Sbjct: 150 LFCQMPVKDIAAWNAMVH-GYLQF----GKVDDALKLFKQMPRKNVISWTTMI----CGL 200

Query: 384 DLLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           D   R+G   EAL+L  NM    +K  +  +  ++ AC    A   +  +V   +I+S  
Sbjct: 201 DQNERSG---EALNLFKNMLRCCIKSTSRTFTCVITACANAPA-FHMGTQVHGFIIKS-- 254

Query: 441 GICSGVYVLLSRV--YASARRWND 462
           G     YV  S +  YA+ +R  D
Sbjct: 255 GFLYEEYVTASLITLYANCKRTED 278


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 190/498 (38%), Positives = 286/498 (57%), Gaps = 11/498 (2%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           A++LF++M E+G V  +  T    + AC        G   H    K G  SDV + N  I
Sbjct: 127 AVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGY 236
             Y  CG ++ A K+FD M  + L+SWN M+  + Q G   + L+L+R M +    PD  
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T   + S+CA L   S+G   H    +       ++  +NN+LI+MY +CG+L  A+ VF
Sbjct: 246 TLVGVLSSCANLGAQSVG---HEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVF 302

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
           + MP+R L SW +II G+ +HG  E A++ F  ++      P+   FV VLSAC+H G+ 
Sbjct: 303 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI-RSGIEPDGTAFVCVLSACSHAGLT 361

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
            +G +YF +M   Y + P  EHY C+VDLL RAG + EA  L+ +MP+KPD  +W +LL 
Sbjct: 362 DQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLG 421

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           A CK H +V L+E   ++VIE E     G YVLLS +Y++A     V  +R +M +K + 
Sbjct: 422 A-CKIHKNVELAELAFERVIELEPENI-GYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 479

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K+PGCS +E+ G  H F  GD +H Q+ +IY  L+ ++  +      P+       +E +
Sbjct: 480 KDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNR---EESN 536

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
               + + +HSE+LA+A G+LN   G  + + KNLR+C+DCH   K++S+I + ++ VRD
Sbjct: 537 KDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRD 596

Query: 597 RARFHHFKDGSCSCMDYW 614
             RFHHF++GSCSC DYW
Sbjct: 597 ATRFHHFRNGSCSCKDYW 614



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 193/393 (49%), Gaps = 21/393 (5%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           N  S  WNT +R  A+      QA+ L+ +M+  G+  P+  TFPFALK+CA L     G
Sbjct: 2   NALSTPWNTQLRELAKRCQFL-QALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILG 59

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF-DNMLERSL-VSWNVMIDAFV 212
            Q H  I K G V + ++   LI  Y     +D A KVF +N   R L V +N ++  +V
Sbjct: 60  SQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYV 119

Query: 213 QFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
              +   A+ LFR+M     P +  T   +  AC     L LG   H   L+   +   +
Sbjct: 120 SNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK---YGFDS 176

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V N  I MY KCGS++ A+++F+ MP + L SWN+++ G+A +G A   L+ +  + 
Sbjct: 177 DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 236

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDY-FDVMINEYNITPVLEHYGCLVDLLARAG 390
           +     P+ +T VGVLS+C + G  S G +  F +  + +   P L +   L+++ AR G
Sbjct: 237 M-NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCG 293

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDAC---CKKHASVVLSEEVAKQVIESEGGICSGVY 447
           N+ +A  +   MP +   V W +++           +V L +E+ +  IE +G   + V 
Sbjct: 294 NLTKAQAVFDGMPER-TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG--TAFVC 350

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
           VL +  +A      D GL    M  +    EPG
Sbjct: 351 VLSACSHAG---LTDQGLEYFKMMKRNYQLEPG 380


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 201/515 (39%), Positives = 290/515 (56%), Gaps = 44/515 (8%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC---------- 183
           D       L+AC +   F    Q+HA I K G  +   +  SL+  YA C          
Sbjct: 58  DHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLL 117

Query: 184 -----------------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
                                  G  D A +VF  ML R +V+WN MI   V+   F+ A
Sbjct: 118 DEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEA 177

Query: 221 LKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           L+ FR M     EPDG+TF S+ + CA L +       H  ++   +  +  + +++++L
Sbjct: 178 LRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMI---EKKIQLNFILSSAL 234

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           ID+Y KCG ++ A++VF S+   D++ WNS+I G A+HG A  A+  F ++ +E S SP+
Sbjct: 235 IDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEME-SVSPD 293

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
           SITF+G+L+AC+H G+V +GR YFD+M   Y+I P LEHYG +VDLL RAG ++EA  ++
Sbjct: 294 SITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMI 353

Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
             MPM+PD VIWR+LL AC         + E+ +  I     + SG Y+LLS +Y S  +
Sbjct: 354 KAMPMEPDIVIWRALLSAC-----RNFKNPELGEVAIAKISHLNSGDYILLSNMYCSLEK 408

Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
           W+    VR++M   GV K  G S +E+ G+ H+F AGD SHP+T  IY  L+ +  + K 
Sbjct: 409 WDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKL 468

Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
            G+ P  +   ++D  D+ ++ +L  HSE+LA+A  IL   PG  IRV KNLR C DCH 
Sbjct: 469 EGFMP-ATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHC 527

Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             K++SR+ +  IIVRDR RFH F+ G CSC DYW
Sbjct: 528 WMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 136/281 (48%), Gaps = 12/281 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFADLDYAFRVFYQ 92
           +SL+S+   C  +       A  L   +P     L+  + II       + D+A RVF +
Sbjct: 98  TSLVSTYAHCDCLDL-----AHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRK 152

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   +  TWN++I  C R+ +   +A+  F+ M+   NV PD  TF   +  CA L +  
Sbjct: 153 MLRRDVVTWNSMIGGCVRN-ERFEEALRFFREML-NSNVEPDGFTFASVINGCARLGSSH 210

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
             +  H  + ++ +  +  ++++LI  Y+ CG ++ A KVF+++    +  WN MI+   
Sbjct: 211 HAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLA 270

Query: 213 QFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             G    A+ +F +M++    PD  TF  I +AC+    +  G      + RH  +S+  
Sbjct: 271 IHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRH--YSIQP 328

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
            +    +++D+  + G ++ A  + ++MP + D+  W +++
Sbjct: 329 QLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALL 369


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 208/549 (37%), Positives = 312/549 (56%), Gaps = 15/549 (2%)

Query: 74  IIHFASFADLDYAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           + +++    L  A  VFY + E  +  +WN++I A  +  +   +A+ L++ MI +G  +
Sbjct: 180 VTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEG-AKALALYKEMIFKGFKI 238

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL---A 189
            D  T    L A   L     G+Q H  + K G   + ++ + LI FY+ CG  D    +
Sbjct: 239 -DMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDS 297

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEF-DSALKLFRRMQ-ILFEPDGYTFQSITSACAG 247
            KVF  +L   LV WN MI  +    E  + A+K FR+MQ I   PD  +F  +TSAC+ 
Sbjct: 298 EKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L++ S     H   ++   H     + VNN+LI +Y K G+L  AR VF+ MP+ +  S+
Sbjct: 358 LSSPSQCKQIHGLAIK--SHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSF 415

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           N +I G+A HG    AL  + R++ +   +PN ITFV VLSAC H G V EG++YF+ M 
Sbjct: 416 NCMIKGYAQHGHGTEALLLYQRML-DSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMK 474

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
             + I P  EHY C++DLL RAG ++EA   +  MP KP +V W +LL A C+KH ++ L
Sbjct: 475 ETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGA-CRKHKNMAL 533

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
           +E  A +++  +  + +  YV+L+ +YA AR+W ++  VRK M  K + K+PGCS IE+ 
Sbjct: 534 AERAANELMVMQ-PLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVK 592

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL-- 545
              H F A D SHP  +++  +L+ + +K+K  GY  D   A + ++        +RL  
Sbjct: 593 KKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGH 652

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSE+LA+A G+++ + G  + V KNLR+C DCH   K +S +   EIIVRD  RFH FKD
Sbjct: 653 HSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKD 712

Query: 606 GSCSCMDYW 614
           G CSC DYW
Sbjct: 713 GKCSCGDYW 721



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 136/321 (42%), Gaps = 51/321 (15%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD-------------------------- 187
           GK  HA   K  + S  Y++N  ++ Y+ CG L                           
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86

Query: 188 -----LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
                +A ++FD + +   VS+N +I  +    E  +A+ LF+RM+ L FE DG+T   +
Sbjct: 87  DSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGL 146

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
            +AC     L   +  H + +     S  +   VNN+ +  Y K G L  A  VF  M +
Sbjct: 147 IAACCDRVDLIKQL--HCFSVSGGFDSYSS---VNNAFVTYYSKGGLLREAVSVFYGMDE 201

Query: 302 -RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
            RD  SWNS+I+ +  H     AL  +  ++  + F  +  T   VL+A      +  GR
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIF-KGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 361 DYFDVMINEYNITPVLEHYGC-LVDLLARAGNIDEAL--HLVSNMPMKPDAVIWRSLLDA 417
            +   +I          H G  L+D  ++ G  D       V    + PD V+W +++  
Sbjct: 261 QFHGKLIKAGFHQN--SHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMI-- 316

Query: 418 CCKKHASVVLSEEVAKQVIES 438
                +   ++EE++++ ++S
Sbjct: 317 -----SGYSMNEELSEEAVKS 332


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 212/566 (37%), Positives = 318/566 (56%), Gaps = 13/566 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           KQIH Q  +          +  S +  +A F  + YA  VF ++ +    +W ++I    
Sbjct: 105 KQIHGQTFKYGFGSN--VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYV 162

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ D   +A+ +F+ M  Q NV PD       + A   +    QGK  H  + K GL  +
Sbjct: 163 QNGDPM-EALNVFKEM-RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 220

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
             I  SL   YA  G +++A   F+ M + +L+ WN MI  +   G  + A+KLFR M  
Sbjct: 221 PDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 280

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                D  T +S   A A + +L L  W   YI +        D  VN  LIDMY KCGS
Sbjct: 281 KNIRVDSITMRSAVLASAQVGSLELARWLDGYISKS---EYRDDTFVNTGLIDMYAKCGS 337

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           + +AR VF+ +  +D+  W+ +I+G+ LHG  + A+  ++ +  +    PN  TF+G+L+
Sbjct: 338 IYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK-QAGVCPNDGTFIGLLT 396

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC + G+V EG + F +M  ++ I P  +HY C+VDLL RAG +++A   + +MP+KP  
Sbjct: 397 ACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGV 455

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
            +W +LL AC K H  V L E  A+Q+   +    +G YV LS +YASA  W  V  VR 
Sbjct: 456 SVWGALLSAC-KIHRKVRLGEIAAEQLFILDP-YNTGHYVQLSNLYASAHLWTRVANVRL 513

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           +MT KG+ K+ G SSIEI+G    F  GD SHP++K+I+  LD ++++LK+ GY P + +
Sbjct: 514 MMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVP-HME 572

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
           + + D   +  + +L  HSERLA+A GI++  PG  +R+ KNLR C +CH   KLIS++ 
Sbjct: 573 SVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLV 632

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
           + EII+RD  RFHHFKDG CSC D+W
Sbjct: 633 DREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 182/372 (48%), Gaps = 17/372 (4%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFADLDYAFRVFYQIENPNSFTWNTLIR 106
            L Q++ Q + + L   HK   +  + I+    F D++YA + F ++  P+   WN +I+
Sbjct: 2   HLDQVYVQLIVSGL---HKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK 58

Query: 107 ACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
              +   VDA    I ++  M +   V P+  TF + LKAC        GKQ H   FK 
Sbjct: 59  GYTQKNIVDA---PIRMYMDM-QISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKY 114

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G  S+V++ NSL+  YA  G +  A  VFD + +R++VSW  +I  +VQ G+   AL +F
Sbjct: 115 GFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVF 174

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           + M Q   +PD     S+ +A   +  L  G   H  + +        D+++  SL  MY
Sbjct: 175 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTK-LGLEFEPDIVI--SLTTMY 231

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            K G +++AR  F  M K +L  WN++I G+A +G  E A+K F R ++ ++   +SIT 
Sbjct: 232 AKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLF-REMITKNIRVDSITM 290

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
              + A    G +   R + D  I++            L+D+ A+ G+I  A  +   + 
Sbjct: 291 RSAVLASAQVGSLELAR-WLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA 349

Query: 404 MKPDAVIWRSLL 415
            K D V+W  ++
Sbjct: 350 DK-DVVLWSVMI 360


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 213/529 (40%), Positives = 305/529 (57%), Gaps = 21/529 (3%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N  +W  +I   A++       ++L +++ E   V+PD++   +      Y+
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQN-----GKVILARKLFE---VMPDRNEVSWTAMLVGYI 247

Query: 149 FAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
            A   G    A  +F       V   N+++  +   G +D A  +F+ M  R   +W+ M
Sbjct: 248 QA---GHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAM 304

Query: 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  + Q      AL  FR M      P+  +F SI + CA LAT   G   HA +LR C 
Sbjct: 305 IKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR-C- 362

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
            S  TDV   ++LI MY KCG+LD A++VF     +D+  WNS+I G+A HG  E AL  
Sbjct: 363 -SFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGI 421

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           FD L +    +P+ IT++GVL+AC++ G V EGR+ F+ M    +I     HY C+VDLL
Sbjct: 422 FDDLRLAR-MAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLL 480

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RAG +DEAL L++NMP++PDA+IW +L+ AC + H +  ++E  AK+++E E G  +G 
Sbjct: 481 GRAGLVDEALDLINNMPVEPDAIIWGALMGAC-RMHKNAEIAEVAAKKLLELEPG-SAGP 538

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-SHPQTKQ 505
           YVLLS +Y S  RW D   +RK ++ + + K PGCS IE + + H F +GD  SHP+   
Sbjct: 539 YVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAI 598

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPI 565
           I   L+ +D  L   GY+ D S   + D  ++ K  SLR HSER A+A G+L +  GMPI
Sbjct: 599 ILNMLEELDGLLMESGYSADGS-FVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPI 657

Query: 566 RVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RV KNLRVC DCH   KLI++I + EII+RD  RFHHFKDG CSC DYW
Sbjct: 658 RVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 137/321 (42%), Gaps = 25/321 (7%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+  ++ +L+R   R       AI LF +M       P+++   + +    +L A   G+
Sbjct: 110 PSVVSFTSLLRGYVRH-GLLADAIRLFHQM-------PERNHVTYTVLLGGFLDA---GR 158

Query: 156 QAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
              A  +F      DV    +++  Y   G +  A  +FD M +R++VSW  MI  + Q 
Sbjct: 159 VNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218

Query: 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           G+   A KLF  M     PD     S T+   G         A        DH     V 
Sbjct: 219 GKVILARKLFEVM-----PDRNEV-SWTAMLVGYIQAGHVEDAEDLFNAMPDHP----VA 268

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             N+++  + + G +D A+ +FE M  RD  +W+++I  +  +     AL  F R ++  
Sbjct: 269 ACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTF-REMLCR 327

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              PN  +F+ +L+ C        GR+    M+     T V      L+ +  + GN+D+
Sbjct: 328 GIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFA-VSALITMYIKCGNLDK 386

Query: 395 ALHLVSNMPMKPDAVIWRSLL 415
           A   V NM    D V+W S++
Sbjct: 387 AKR-VFNMFEPKDVVMWNSMI 406



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 37/264 (14%)

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-- 227
           V   N+ I +    G+++ A   FD M  R+  S+N +I  + +    D+AL LF RM  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 228 ------QILFEPDGYTFQSITSACAGLATLSL--GMWAHAYILR-HCDHSLVTDVL---- 274
                   L         ++  A A LA++ L   + +   +LR +  H L+ D +    
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 275 --------VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
                       L+  +   G ++ AR++F+ MP +D+ +  +++ G+   GR   A   
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARAL 196

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVD 384
           FD     E    N +++  ++S     G V   R  F+VM   NE + T +L  Y     
Sbjct: 197 FD-----EMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGY----- 246

Query: 385 LLARAGNIDEALHLVSNMPMKPDA 408
              +AG++++A  L + MP  P A
Sbjct: 247 --IQAGHVEDAEDLFNAMPDHPVA 268



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
           S F      G   N++S +S LT C +++     +++HA  LR +         + + I 
Sbjct: 319 STFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTD--VFAVSALIT 376

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +    +LD A RVF   E  +   WN++I   A+      +A+ +F   +    + PD 
Sbjct: 377 MYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQH-GLGEEALGIFDD-LRLARMAPDG 434

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFD 194
            T+   L AC+Y     +G++    IF   G+ S + +  +  H+  SC           
Sbjct: 435 ITYIGVLTACSYTGKVKEGRE----IFNSMGMNSSIRLGAA--HY--SC----------- 475

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
                       M+D   + G  D AL L   M +  EPD   + ++  AC
Sbjct: 476 ------------MVDLLGRAGLVDEALDLINNMPV--EPDAIIWGALMGAC 512



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           +R    S    V+  N+ I    + G+++ AR  F++MP R   S+N++I G+  +   +
Sbjct: 6   VRFLPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPD 65

Query: 322 AALKYFDRLVVEE----------------------------SFSPNSITFVGVLSACNHR 353
           AAL  F R+   +                               P+ ++F  +L      
Sbjct: 66  AALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRH 125

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G++++    F  M    ++T     Y  L+     AG ++EA  L   MP K D V   +
Sbjct: 126 GLLADAIRLFHQMPERNHVT-----YTVLLGGFLDAGRVNEARKLFDEMPDK-DVVARTA 179

Query: 414 LLDACCKK---HASVVLSEEVAKQVIESEGGICSG 445
           +L   C+      +  L +E+ K+ + S   + SG
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISG 214


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 332/604 (54%), Gaps = 22/604 (3%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRII 75
           S F   R EG      +L S L  C S+  ++   Q+H   ++     +   L + S + 
Sbjct: 162 SSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCE---LFVGSNLT 218

Query: 76  H-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
             ++   +L  A + F ++   ++  W ++I    ++ D K +A+  + +M+   +V  D
Sbjct: 219 DMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFK-KALTAYMKMVTD-DVFID 276

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           +H     L AC+ L A S GK  HA I K G   + +I N+L   Y+  G +  A+ VF 
Sbjct: 277 QHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQ 336

Query: 195 NMLE-RSLVSWNVMIDAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLAT 250
              +  S+VS   +ID +V+  + + AL  F   RR  I  EP+ +TF S+  ACA  A 
Sbjct: 337 IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGI--EPNEFTFTSLIKACANQAK 394

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G   H  +++    +   D  V+++L+DMY KCG  D + Q+F+ +   D  +WN++
Sbjct: 395 LEHGSQLHGQVVKF---NFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTL 451

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           +  F+ HG    A++ F+ ++      PN++TFV +L  C+H GMV +G +YF  M   Y
Sbjct: 452 VGVFSQHGLGRNAIETFNGMI-HRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIY 510

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            + P  EHY C++DLL RAG + EA   ++NMP +P+   W S L AC K H  +  ++ 
Sbjct: 511 GVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGAC-KIHGDMERAKF 569

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            A ++++ E    SG +VLLS +YA  ++W DV  +RK++ D  + K PG S ++I    
Sbjct: 570 AADKLMKLEPE-NSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKT 628

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F   D SHPQ K+IY  LD + +++K  GY P  +++ ++D  D+ K+  L  HSER+
Sbjct: 629 HVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQ-TESVLIDMDDNLKEKLLHYHSERI 687

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A  +L    GMPI V KNLRVC DCH   K IS++    IIVRD +RFHHF +GSCSC
Sbjct: 688 AVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSC 747

Query: 611 MDYW 614
            DYW
Sbjct: 748 GDYW 751



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 175/385 (45%), Gaps = 18/385 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTA-LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           L+ +    K +++ KQ+HA  +R   LP    T L    +  ++   +LDY  ++F ++ 
Sbjct: 81  LIQTYARTKELNKGKQLHAMLIRGGCLPN---TFLSNHFLNLYSKCGELDYTIKLFDKMS 137

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             N  +W ++I   A +   + +A+  F +M  +G +   +      L+AC  L A   G
Sbjct: 138 QRNMVSWTSIITGFAHNSRFQ-EALSSFCQMRIEGEI-ATQFALSSVLQACTSLGAIQFG 195

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
            Q H  + K G   ++++ ++L   Y+ CG L  A K F+ M  +  V W  MID FV+ 
Sbjct: 196 TQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKN 255

Query: 215 GEFDSALKLFRRMQI--LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
           G+F  AL  + +M    +F  D +   S  SAC+ L   S G   HA IL+        +
Sbjct: 256 GDFKKALTAYMKMVTDDVF-IDQHVLCSTLSACSALKASSFGKSLHATILK---LGFEYE 311

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLV 331
             + N+L DMY K G +  A  VF+       + S  +II G+    + E AL  F  L 
Sbjct: 312 TFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL- 370

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNITPVLEHYGCLVDLLARAG 390
                 PN  TF  ++ AC ++  +  G      ++   +   P +     LVD+  + G
Sbjct: 371 RRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCG 428

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
             D ++ L   +   PD + W +L+
Sbjct: 429 LFDHSIQLFDEIE-NPDEIAWNTLV 452



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 5/241 (2%)

Query: 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
             + +   G+ L D  T    ++  A     ++GKQ HA + + G + + +++N  ++ Y
Sbjct: 61  FLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLY 120

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQ 239
           + CG LD   K+FD M +R++VSW  +I  F     F  AL  F +M+I  E    +   
Sbjct: 121 SKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALS 180

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+  AC  L  +  G   H  +++ C      ++ V ++L DMY KCG L  A + FE M
Sbjct: 181 SVLQACTSLGAIQFGTQVHCLVVK-C--GFGCELFVGSNLTDMYSKCGELSDACKAFEEM 237

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
           P +D   W S+I GF  +G  + AL  + ++V ++ F    +     LSAC+     S G
Sbjct: 238 PCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHV-LCSTLSACSALKASSFG 296

Query: 360 R 360
           +
Sbjct: 297 K 297


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 324/605 (53%), Gaps = 49/605 (8%)

Query: 47  SQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLI 105
           S++K++H  A+R  +        + + +IH +     ++ A RVF  +   +  +W T +
Sbjct: 149 SRVKEVHDDAIRCGMMSDA---FLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSW-TSM 204

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
            +C  +       + +F  M   G V P+  T    L AC+ L     G+  H    + G
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNG-VKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHG 263

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF- 224
           ++ +V++ ++L+  YA C  +  A  VFD M  R +VSWN ++ A+    E+D  L LF 
Sbjct: 264 MIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFS 323

Query: 225 ----------------------------------RRMQIL-FEPDGYTFQSITSACAGLA 249
                                             R+MQ L F+P+  T  S   AC+ L 
Sbjct: 324 QMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILE 383

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           +L +G   H Y+ RH    L+ D+    +L+ MY KCG L+++R VF+ + ++D+ +WN+
Sbjct: 384 SLRMGKEVHCYVFRHW---LIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNT 440

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I+  A+HG     L  F+ ++ +    PNS+TF GVLS C+H  +V EG   F+ M  +
Sbjct: 441 MIIANAMHGNGREVLLLFESML-QSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRD 499

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + + P   HY C+VD+ +RAG + EA   +  MPM+P A  W +LL AC + + +V L++
Sbjct: 500 HLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGAC-RVYKNVELAK 558

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A ++ E E     G YV L  +  +A+ W++    R LM ++G+TK PGCS +++   
Sbjct: 559 ISANKLFEIEPN-NPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDR 617

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            H F  GD ++ ++ +IY FLD + EK+KS GY PD +   + D   + K  SL  HSE+
Sbjct: 618 VHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPD-TDYVLQDIDQEEKAESLCSHSEK 676

Query: 550 LAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCS 609
           LA+A GILNL     IRVFKNLR+C DCH   K +S++  V IIVRD  RFHHF++G+CS
Sbjct: 677 LAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCS 736

Query: 610 CMDYW 614
           C D W
Sbjct: 737 CQDLW 741



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 185/410 (45%), Gaps = 44/410 (10%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           +S S  KQ+ +  +  ++P    + L    +    +  D   A ++F  I  P+  T +T
Sbjct: 43  QSSSIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCST 102

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           LI A   +     +AI L+  +  +G + P    F    KAC      S+ K+ H    +
Sbjct: 103 LISAFT-TRGLPNEAIRLYASLRARG-IKPHNSVFLTVAKACGASGDASRVKEVHDDAIR 160

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
            G++SD ++ N+LIH Y  C  ++ A +VFD+++ + +VSW  M   +V  G     L +
Sbjct: 161 CGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAV 220

Query: 224 FRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           F  M     +P+  T  SI  AC+ L  L  G   H + +R   H ++ +V V ++L+ +
Sbjct: 221 FCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVR---HGMIENVFVCSALVSL 277

Query: 283 YCKCGSLDIARQVFESMPKRDLTSWNSIIL----------GFAL---------------- 316
           Y +C S+  AR VF+ MP RD+ SWN ++           G AL                
Sbjct: 278 YARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATW 337

Query: 317 ---------HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
                    +G+ E A++   R +    F PN IT    L AC+    +  G++    + 
Sbjct: 338 NAVIGGCMENGQTEKAVEML-RKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVF 396

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             + I   L     LV + A+ G+++ + + V +M  + D V W +++ A
Sbjct: 397 RHWLIGD-LTTMTALVYMYAKCGDLNLSRN-VFDMICRKDVVAWNTMIIA 444


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 212/566 (37%), Positives = 318/566 (56%), Gaps = 13/566 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           KQIH Q  +          +  S +  +A F  + YA  VF ++ +    +W ++I    
Sbjct: 120 KQIHGQTFKYGFGSN--VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYV 177

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++ D   +A+ +F+ M  Q NV PD       + A   +    QGK  H  + K GL  +
Sbjct: 178 QNGDPM-EALNVFKEM-RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 235

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
             I  SL   YA  G +++A   F+ M + +L+ WN MI  +   G  + A+KLFR M  
Sbjct: 236 PDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 295

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
                D  T +S   A A + +L L  W   YI +        D  VN  LIDMY KCGS
Sbjct: 296 KNIRVDSITMRSAVLASAQVGSLELARWLDGYISKS---EYRDDTFVNTGLIDMYAKCGS 352

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           + +AR VF+ +  +D+  W+ +I+G+ LHG  + A+  ++ +  +    PN  TF+G+L+
Sbjct: 353 IYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK-QAGVCPNDGTFIGLLT 411

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC + G+V EG + F +M  ++ I P  +HY C+VDLL RAG +++A   + +MP+KP  
Sbjct: 412 ACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGV 470

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
            +W +LL AC K H  V L E  A+Q+   +    +G YV LS +YASA  W  V  VR 
Sbjct: 471 SVWGALLSAC-KIHRKVRLGEIAAEQLFILDP-YNTGHYVQLSNLYASAHLWTRVANVRL 528

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           +MT KG+ K+ G SSIEI+G    F  GD SHP++K+I+  LD ++++LK+ GY P + +
Sbjct: 529 MMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVP-HME 587

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
           + + D   +  + +L  HSERLA+A GI++  PG  +R+ KNLR C +CH   KLIS++ 
Sbjct: 588 SVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLV 647

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
           + EII+RD  RFHHFKDG CSC D+W
Sbjct: 648 DREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 17/374 (4%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFADLDYAFRVFYQIENPNSFTWNTL 104
           +  L Q++ Q + + L   HK   +  + I+    F D++YA + F ++  P+   WN +
Sbjct: 15  LKHLDQVYVQLIVSGL---HKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAI 71

Query: 105 IRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           I+   +   VDA    I ++  M +   V P+  TF + LKAC        GKQ H   F
Sbjct: 72  IKGYTQKNIVDA---PIRMYMDM-QISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF 127

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K G  S+V++ NSL+  YA  G +  A  VFD + +R++VSW  +I  +VQ G+   AL 
Sbjct: 128 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 187

Query: 223 LFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +F+ M Q   +PD     S+ +A   +  L  G   H  + +        D+++  SL  
Sbjct: 188 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTK-LGLEFEPDIVI--SLTT 244

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY K G +++AR  F  M K +L  WN++I G+A +G  E A+K F R ++ ++   +SI
Sbjct: 245 MYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLF-REMITKNIRVDSI 303

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T    + A    G +   R + D  I++            L+D+ A+ G+I  A  +   
Sbjct: 304 TMRSAVLASAQVGSLELAR-WLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDR 362

Query: 402 MPMKPDAVIWRSLL 415
           +  K D V+W  ++
Sbjct: 363 VADK-DVVLWSVMI 375


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 323/570 (56%), Gaps = 19/570 (3%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY-QIENPNSFTWNTLIRAC 108
           +Q+HA ++ T   +      + ++I+ F S  D     R+ + ++   +  ++N +I + 
Sbjct: 270 QQLHALSVTTGFSRDAS---VGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSY 326

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA--LKACAYLFAFSQGKQAHAHIFKRGL 166
           +++ D    ++  F+ M   G    D+  FPFA  L   A L +   G+Q H        
Sbjct: 327 SQA-DQYEASLHFFREMQCMGF---DRRNFPFATMLSIAANLSSLQMGRQLHCQALLATA 382

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
            S +++ NSL+  YA C   + A  +F ++ +R+ VSW  +I  +VQ G   + LKLF +
Sbjct: 383 DSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTK 442

Query: 227 MQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M+      D  TF ++  A A  A+L LG   HA+I+R  +   + +V   + L+DMY K
Sbjct: 443 MRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGN---LENVFSGSGLVDMYAK 499

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CGS+  A QVFE MP R+  SWN++I   A +G  EAA+  F +++ E    P+S++ +G
Sbjct: 500 CGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMI-ESGLQPDSVSILG 558

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL+AC+H G V +G +YF  M   Y ITP  +HY C++DLL R G   EA  L+  MP +
Sbjct: 559 VLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFE 618

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           PD ++W S+L+AC + H +  L+E  A+++   E    +  YV +S +YA+A  W  V  
Sbjct: 619 PDEIMWSSVLNAC-RIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRD 677

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           V+K M ++G+ K P  S +E++   H F + D +HP   +I   ++ +  +++  GY PD
Sbjct: 678 VKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPD 737

Query: 526 YSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
            S  ++V ++D+  K  SL+ HSERLA+A  +++   G PI V KNLR C+DCH   KLI
Sbjct: 738 TS--SVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLI 795

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S+I   EI VRD +RFHHF +G CSC DYW
Sbjct: 796 SKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 188/387 (48%), Gaps = 13/387 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRII--HFASFADLDYAFRVFY 91
           ++LL    +    + + Q+HA A++          L  S ++   +     LD A  +F 
Sbjct: 151 TTLLPGCNDAVPQNAVGQVHAFAVKLGFDTN--PFLTVSNVLLKSYCEVRRLDLACVLFE 208

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           +I   +S T+NTLI    +      ++I LF +M + G+  P   TF   LKA   L  F
Sbjct: 209 EIPEKDSVTFNTLITGYEKD-GLYTESIHLFLKMRQSGH-QPSDFTFSGVLKAVVGLHDF 266

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           + G+Q HA     G   D  + N ++ FY+    +     +FD M E   VS+NV+I ++
Sbjct: 267 ALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSY 326

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q  +++++L  FR MQ + F+   + F ++ S  A L++L +G   H   L     S++
Sbjct: 327 SQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSIL 386

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
               V NSL+DMY KC   + A  +F+S+P+R   SW ++I G+   G   A LK F ++
Sbjct: 387 H---VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKM 443

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
               +   +  TF  VL A      +  G+     +I   N+  V    G LVD+ A+ G
Sbjct: 444 -RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCG 501

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +I +A+ +   MP + +AV W +L+ A
Sbjct: 502 SIKDAVQVFEEMPDR-NAVSWNALISA 527



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 5/180 (2%)

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---QI 229
            N++I  +   G +  A  +FD M +R++V+W +++  + +   FD A KLFR+M     
Sbjct: 82  TNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSS 141

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
              PD  TF ++   C      +     HA+ ++         + V+N L+  YC+   L
Sbjct: 142 CTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVK-LGFDTNPFLTVSNVLLKSYCEVRRL 200

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           D+A  +FE +P++D  ++N++I G+   G    ++  F ++  +    P+  TF GVL A
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKM-RQSGHQPSDFTFSGVLKA 259


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 330/595 (55%), Gaps = 27/595 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           S++++ L+ C S + ++         AL      LL+ + ++  +     ++ A +VF  
Sbjct: 248 SAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDA 307

Query: 93  IENP--NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           ++    +  +WN ++ A   + D    AI L+QRM     +  DK T+   L AC+    
Sbjct: 308 MDEALRDVVSWNIMLSAYVHN-DRGKDAIQLYQRM----QLRADKVTYVSLLSACSSAED 362

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G+  H  I    L  +V + N+L+  YA CG    A  VFD M +RS++SW  +I A
Sbjct: 363 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 422

Query: 211 FVQFGEFDSALKLFRRMQIL--------FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           +V+      A  LF++M  L         +PD   F +I +ACA ++ L  G        
Sbjct: 423 YVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSE--- 479

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAE 321
           +     L +D  V  +++++Y KCG ++  R++F+ +  R D+  WN++I  +A  G++ 
Sbjct: 480 QAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSH 539

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY-NITPVLEHYG 380
            ALK F R+ +E    P+S +FV +L AC+H G+  +G+ YF  M  EY N+T  ++H+G
Sbjct: 540 EALKLFWRMEME-GVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFG 598

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+ DLL R G + EA   +  +P+KPDAV W SLL A C+ H  +  ++EVA +++  E 
Sbjct: 599 CVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLL-AACRNHRDLKRAKEVANKLLRLEP 657

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
              +G YV LS +YA  ++W+ V  VRK M ++GV KE G S+IEI    H+F  GD +H
Sbjct: 658 RCATG-YVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAH 716

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAA-MVDELDDGKQSSLRLHSERLAIALGILNL 559
           P+ ++I   L  +  ++K  GY PD       VDE +  K+  L  HSERLAIALG+++ 
Sbjct: 717 PRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQE--KERLLFSHSERLAIALGLIST 774

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G P+RV KNLRVC DCH  TKLIS+I   +I+VRD  RFH FKDG CSC DYW
Sbjct: 775 PLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 194/396 (48%), Gaps = 20/396 (5%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL--IYSRIIHFASFADLDYAFRV 89
            ++ LL      +++ + ++IH+ A++  L   +  L   I S   H  S  D   AF  
Sbjct: 45  TYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDA 104

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
              +E  N ++W  L+ A A S  +K + +   +RM + G V PD  TF  AL +C    
Sbjct: 105 ---LEQRNLYSWTGLVAAFAISGQSK-ETLRALERMRQDG-VRPDAVTFITALGSCGDPE 159

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMI 208
           +   G + H  +    L  D  ++N+L++ Y  CG L  A +VF  M   R+++SW++M 
Sbjct: 160 SLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMA 219

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
            A    G    AL+ FR M +L  +       +I SAC+  A +  G   H+ I      
Sbjct: 220 GAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIAL---S 276

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSWNSIILGFALHGRAEAALK 325
              +++LV N+++ MY +CG+++ AR+VF++M +  RD+ SWN ++  +  + R + A++
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQ 336

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            + R+        + +T+V +LSAC+    V  GR     ++N+     V+     LV +
Sbjct: 337 LYQRM----QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG-NALVSM 391

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
            A+ G+  EA  +   M  +   + W +++ A  ++
Sbjct: 392 YAKCGSHTEARAVFDKMEQR-SIISWTTIISAYVRR 426


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 307/568 (54%), Gaps = 45/568 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           +D A  +F  + + +  +WN +I    ++ +DAK  A+ LF RM+ + ++ PD+ T    
Sbjct: 246 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAK--ALKLFSRMLHESSMAPDEFTITSV 303

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--- 198
           L ACA L     GKQ HA+I +  +  +  + N+LI  YA  G ++ A ++ D  +E   
Sbjct: 304 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL 363

Query: 199 ------------------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                                         R +V+W  MI  + Q G  D A+ LFR M 
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423

Query: 229 ILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
               EP+ YT  ++ S CA LA L  G   H   +R     L     V+N++I MY + G
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL---LEQSSSVSNAIITMYARSG 480

Query: 288 SLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           S   AR++F+ +  R  T +W S+I+  A HG+ E A+  F+ ++      P+ IT+VGV
Sbjct: 481 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML-RAGVEPDRITYVGV 539

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC+H G V+EG+ Y+D + NE+ I P + HY C+VDLLARAG   EA   +  MP++P
Sbjct: 540 LSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEP 599

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           DA+ W SLL A C+ H +  L+E  A++++  +    SG Y  ++ VY++  RW+D   +
Sbjct: 600 DAIAWGSLLSA-CRVHKNAELAELAAEKLLSIDPN-NSGAYSAIANVYSACGRWSDAARI 657

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
            K   +K V KE G S   I    H F A D  HPQ   +Y     + E++K  G+ PD 
Sbjct: 658 WKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDL 717

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
            Q+ + D  D+ K+  L  HSE+LAIA G+++      +RV KNLRVC DCH   K IS+
Sbjct: 718 -QSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 776

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + + EIIVRD  RFHHF+DG CSC DYW
Sbjct: 777 VTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 195/457 (42%), Gaps = 79/457 (17%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ L   +P   + +  ++ ++  FA    L  A  VF ++   ++ +W  ++    R+ 
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRA- 142

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
               +AI     M   G   P + T    L +CA   A + G++ H+ + K GL S V +
Sbjct: 143 GRFGEAIKTLLDMTADG-FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPV 201

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD-------------- 218
            NS+++ Y  CG  + A  VF+ M  RS+ SWN M+      G  D              
Sbjct: 202 ANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI 261

Query: 219 -----------------SALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
                             ALKLF RM  +    PD +T  S+ SACA L  + +G   HA
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321

Query: 260 YILRH----------------------------CDHSLVTD--VLVNNSLIDMYCKCGSL 289
           YILR                              D S+ TD  V+   +L++ Y K G +
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + AR++F  M  RD+ +W ++I+G+  +GR + A+  F R ++     PNS T   VLS 
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF-RSMITCGPEPNSYTLAAVLSV 440

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPMK 405
           C     +  G+      I+   I  +LE        ++ + AR+G+   A  +   +  +
Sbjct: 441 CASLACLDYGKQ-----IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 406 PDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESE 439
            + + W S++ A     +   +V L EE+ +  +E +
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 532



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 147/352 (41%), Gaps = 80/352 (22%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY--------------------- 180
           L+ C        G+  HA   K GL++  Y+ N+L+ +Y                     
Sbjct: 33  LQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIP 92

Query: 181 ----------------ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                           A  G L  A  VF  M ER  VSW VM+    + G F  A+K  
Sbjct: 93  LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152

Query: 225 RRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M    F P  +T  ++ S+CA     ++G   H+++++     L + V V NS+++MY
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK---LGLGSCVPVANSVLNMY 209

Query: 284 CKCGS-------------------------------LDIARQVFESMPKRDLTSWNSIIL 312
            KCG                                +D+A  +FESMP R + SWN++I 
Sbjct: 210 GKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIA 269

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE--- 369
           G+  +G    ALK F R++ E S +P+  T   VLSAC + G V  G+     ++     
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA 329

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLV-SNMPMKPDAVIWRSLLDACCK 420
           YN     +    L+   A++G+++ A  ++  +M    + + + +LL+   K
Sbjct: 330 YNS----QVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK 377



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 40/222 (18%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G   N  +L + L+ C S++ L   KQIH +A+R+ L Q     +  + I  +A      
Sbjct: 426 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS--VSNAIITMYARSGSFP 483

Query: 85  YAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           +A R+F Q+     + TW ++I A A+    + +A+ LF+ M+  G V PD+ T+   L 
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGE-EAVGLFEEMLRAG-VEPDRITYVGVLS 541

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           AC++    ++GK+ +  I      ++  I   + H+  +C                    
Sbjct: 542 ACSHAGFVNEGKRYYDQI-----KNEHQIAPEMSHY--AC-------------------- 574

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
              M+D   + G F  A +  RRM +  EPD   + S+ SAC
Sbjct: 575 ---MVDLLARAGLFSEAQEFIRRMPV--EPDAIAWGSLLSAC 611


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 307/568 (54%), Gaps = 45/568 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           +D A  +F  + + +  +WN +I    ++ +DAK  A+ LF RM+ + ++ PD+ T    
Sbjct: 140 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAK--ALKLFSRMLHESSMAPDEFTITSV 197

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--- 198
           L ACA L     GKQ HA+I +  +  +  + N+LI  YA  G ++ A ++ D  +E   
Sbjct: 198 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL 257

Query: 199 ------------------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                                         R +V+W  MI  + Q G  D A+ LFR M 
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 317

Query: 229 ILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
               EP+ YT  ++ S CA LA L  G   H   +R     L     V+N++I MY + G
Sbjct: 318 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL---LEQSSSVSNAIITMYARSG 374

Query: 288 SLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           S   AR++F+ +  R  T +W S+I+  A HG+ E A+  F+ ++      P+ IT+VGV
Sbjct: 375 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML-RAGVEPDRITYVGV 433

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC+H G V+EG+ Y+D + NE+ I P + HY C+VDLLARAG   EA   +  MP++P
Sbjct: 434 LSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEP 493

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           DA+ W SLL A C+ H +  L+E  A++++  +    SG Y  ++ VY++  RW+D   +
Sbjct: 494 DAIAWGSLLSA-CRVHKNAELAELAAEKLLSIDPN-NSGAYSAIANVYSACGRWSDAARI 551

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
            K   +K V KE G S   I    H F A D  HPQ   +Y     + E++K  G+ PD 
Sbjct: 552 WKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDL 611

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
            Q+ + D  D+ K+  L  HSE+LAIA G+++      +RV KNLRVC DCH   K IS+
Sbjct: 612 -QSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 670

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + + EIIVRD  RFHHF+DG CSC DYW
Sbjct: 671 VTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 184/433 (42%), Gaps = 78/433 (18%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           FA    L  A  VF ++   ++ +W  ++    R+     +AI     M   G   P + 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRA-GRFGEAIKTLLDMTADG-FTPTQF 59

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    L +CA   A + G++ H+ + K GL S V + NS+++ Y  CG  + A  VF+ M
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 197 LERSLVSWNVMIDAFVQFGEFD-------------------------------SALKLFR 225
             RS+ SWN M+      G  D                                ALKLF 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 226 RM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH------------------- 264
           RM  +    PD +T  S+ SACA L  + +G   HAYILR                    
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 265 ---------CDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
                     D S+ TD  V+   +L++ Y K G ++ AR++F  M  RD+ +W ++I+G
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +  +GR + A+  F R ++     PNS T   VLS C     +  G+      I+   I 
Sbjct: 300 YEQNGRNDEAIDLF-RSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ-----IHCRAIR 353

Query: 374 PVLEHYG----CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC---KKHASVV 426
            +LE        ++ + AR+G+   A  +   +  + + + W S++ A     +   +V 
Sbjct: 354 SLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVG 413

Query: 427 LSEEVAKQVIESE 439
           L EE+ +  +E +
Sbjct: 414 LFEEMLRAGVEPD 426



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 40/222 (18%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G   N  +L + L+ C S++ L   KQIH +A+R+ L Q     +  + I  +A      
Sbjct: 320 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS--VSNAIITMYARSGSFP 377

Query: 85  YAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           +A R+F Q+     + TW ++I A A+    + +A+ LF+ M+  G V PD+ T+   L 
Sbjct: 378 WARRMFDQVCWRKETITWTSMIVALAQHGQGE-EAVGLFEEMLRAG-VEPDRITYVGVLS 435

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           AC++    ++GK+ +  I      ++  I   + H+  +C                    
Sbjct: 436 ACSHAGFVNEGKRYYDQI-----KNEHQIAPEMSHY--AC-------------------- 468

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
              M+D   + G F  A +  RRM +  EPD   + S+ SAC
Sbjct: 469 ---MVDLLARAGLFSEAQEFIRRMPV--EPDAIAWGSLLSAC 505



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           M+ K G L  AR VF  MP+RD  SW  +++G    GR   A+K    +   + F+P   
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA-DGFTPTQF 59

Query: 342 TFVGVLSAC--NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
           T   VLS+C     G V      F V +   +  PV      ++++  + G+ + A  + 
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMYGKCGDSETATTVF 116

Query: 400 SNMPMK 405
             MP++
Sbjct: 117 ERMPVR 122


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 199/505 (39%), Positives = 297/505 (58%), Gaps = 16/505 (3%)

Query: 117 QAIVLFQRMIEQGNV-LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
            ++ LF+ MI   +  + D+     A  A A +         HA I K G   +  + N+
Sbjct: 179 HSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNT 238

Query: 176 LIHFYASCGHLDL--ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--- 230
           ++  YA  G  DL  A KVFD M ER +VSWN MI  + Q G    A+ L+ +M  +   
Sbjct: 239 MLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 297

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            + +     ++  ACA    +  G   H  ++R     L  +V V  S++DMY KCG ++
Sbjct: 298 IKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRM---GLEENVYVGTSIVDMYSKCGRVE 354

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           +A + F  + ++++ SW+++I G+ +HGR + AL+ F  +       PN ITF+ VL+AC
Sbjct: 355 MASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMK-RSGLRPNYITFISVLAAC 413

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H G++ EGR +++ M  E+ I   +EHYGC+VDLL RAG +DEA  L+  M +KPDA I
Sbjct: 414 SHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAI 473

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           W +LL AC + H +V L+E   K++ E +    SG YVLLS +YA AR W DV  +R L+
Sbjct: 474 WGALLSAC-RIHKNVELAEMSVKRLFELDAS-NSGYYVLLSNIYAEARMWKDVERIRLLV 531

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
             + + K PG SS E+ G  + F+ GD SHPQ  +IY +L+ + E+++  GY P+    +
Sbjct: 532 KTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPN--TGS 589

Query: 531 MVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
           ++ +LD+  K+S+LR+HSE+LA+A  ++N  P   I + KNLRVC DCH   K I++I  
Sbjct: 590 VLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITE 649

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
            EII+RD  RFHHFKDG CSC DYW
Sbjct: 650 REIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 125/252 (49%), Gaps = 7/252 (2%)

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPF 140
           DL+ A +VF  +E  +  +WN++I   A++     +AI L+ +M+  G  +  +      
Sbjct: 250 DLEVARKVFDTMER-DVVSWNSMIALYAQN-GMSAEAIGLYSKMLNVGGGIKCNAVALSA 307

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L ACA+  A   GK+ H  + + GL  +VY+  S++  Y+ CG +++A++ F  + E++
Sbjct: 308 VLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 367

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           ++SW+ MI  +   G    AL++F  M+     P+  TF S+ +AC+    L  G + + 
Sbjct: 368 ILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYN 427

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHG 318
            + +  +  +   V     ++D+  + G LD A  + + M  K D   W +++    +H 
Sbjct: 428 AMKQ--EFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHK 485

Query: 319 RAEAALKYFDRL 330
             E A     RL
Sbjct: 486 NVELAEMSVKRL 497


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 202/555 (36%), Positives = 304/555 (54%), Gaps = 45/555 (8%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN  +WN ++     +     +A+ +F+ M+ QG   PD  T    L A   L     G 
Sbjct: 203 PNLVSWNGMLAGFGNN-GFYDEAVGMFRMMLVQG-FWPDGSTVSCVLPAVGCLEDVVVGA 260

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCG------------------------------- 184
           Q H ++ K+GL SD ++ ++++  Y  CG                               
Sbjct: 261 QVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNG 320

Query: 185 ----HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
                L++ NK  D  +E ++V+W  +I +  Q G+   AL+LFR MQ    EP+  T  
Sbjct: 321 MVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIP 380

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+  AC  ++ L  G   H + LR     +  DV V ++LIDMY KCG + +AR+ F+ M
Sbjct: 381 SLIPACGNISALMHGKEIHCFSLRR---GIFDDVYVGSALIDMYAKCGRIQLARRCFDKM 437

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
              +L SWN+++ G+A+HG+A+  ++ F  ++++    P+ +TF  VLSAC   G+  EG
Sbjct: 438 SALNLVSWNAVMKGYAMHGKAKETMEMF-HMMLQSGQKPDLVTFTCVLSACAQNGLTEEG 496

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
              ++ M  E+ I P +EHY CLV LL+R G ++EA  ++  MP +PDA +W +LL +C 
Sbjct: 497 WRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSC- 555

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H ++ L E  A+++   E     G Y+LLS +YAS   W++   +R++M  KG+ K P
Sbjct: 556 RVHNNLSLGEIAAEKLFFLEP-TNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNP 614

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           G S IE+    H   AGD SHPQ K I   LD ++ ++K  GY P  +   + D  +  K
Sbjct: 615 GYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPK-TNFVLQDVEEQDK 673

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           +  L  HSE+LA+ LG+LN  PG P++V KNLR+C DCH V K+ISR+   EI VRD  R
Sbjct: 674 EQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNR 733

Query: 600 FHHFKDGSCSCMDYW 614
           FHHFKDG CSC D+W
Sbjct: 734 FHHFKDGVCSCGDFW 748



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 184/405 (45%), Gaps = 49/405 (12%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIHFASFADLDYAFR 88
           F+  S  LSS T   S+SQ +Q HA  LR  L      T  + S   +  S +    +  
Sbjct: 2   FHALSQCLSSST--ASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLT 59

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +   + +P  F++++LI A ARS    P  +  F  +     ++PD    P A+K+CA L
Sbjct: 60  LSSHLPHPTLFSFSSLIHAFARS-HHFPHVLTTFSHL-HPLRLIPDAFLLPSAIKSCASL 117

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER--------- 199
            A   G+Q HA     G ++D  + +SL H Y  C  +  A K+FD M +R         
Sbjct: 118 RALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMI 177

Query: 200 --------------------------SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
                                     +LVSWN M+  F   G +D A+ +FR M +  F 
Sbjct: 178 AGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFW 237

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           PDG T   +  A   L  + +G   H Y+++     L +D  V ++++DMY KCG +   
Sbjct: 238 PDGSTVSCVLPAVGCLEDVVVGAQVHGYVIK---QGLGSDKFVVSAMLDMYGKCGCVKEM 294

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
            +VF+ + + ++ S N+ + G + +G  + AL+ F++   ++    N +T+  ++++C+ 
Sbjct: 295 SRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKF-KDQKMELNVVTWTSIIASCSQ 353

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
            G   E  + F  M   Y + P   +   +  L+   GNI   +H
Sbjct: 354 NGKDLEALELFRDM-QAYGVEP---NAVTIPSLIPACGNISALMH 394



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 83  LDYAFRVFYQIENP----NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF 138
           +D A  VF + ++     N  TW ++I +C+++     +A+ LF+ M   G V P+  T 
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQN-GKDLEALELFRDMQAYG-VEPNAVTI 379

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
           P  + AC  + A   GK+ H    +RG+  DVY+ ++LI  YA CG + LA + FD M  
Sbjct: 380 PSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSA 439

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWA 257
            +LVSWN ++  +   G+    +++F  M Q   +PD  TF  + SACA       G W 
Sbjct: 440 LNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEG-W- 497

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFAL 316
             Y     +H +   +     L+ +  + G L+ A  + + MP + D   W +++    +
Sbjct: 498 RCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRV 557

Query: 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           H          ++L   E  +P +   +  + A   +G+  E     +VM
Sbjct: 558 HNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYA--SKGLWDEENRIREVM 605



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 144/312 (46%), Gaps = 25/312 (8%)

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL---DLANKVFDNMLERSLVSWNV 206
           + SQ +QAHA I +  L SD  +  SL+ FYA+   L    L+  +  ++   +L S++ 
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           +I AF +   F   L  F  +  L   PD +   S   +CA L  L  G   HA+     
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFA---A 131

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
               +TD +V +SL  MY KC  +  AR++F+ MP RD+  W+++I G++  G  E A +
Sbjct: 132 ASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKE 191

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI------NEYNITPVLEHY 379
            F  +       PN +++ G+L+   + G   E    F +M+      +   ++ VL   
Sbjct: 192 LFGEM-RSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAV 250

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD-----ACCKKHASVVLSEEVAKQ 434
           GCL D++  A    +    V    +  D  +  ++LD      C K+ + V   +EV + 
Sbjct: 251 GCLEDVVVGA----QVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVF--DEVEEM 304

Query: 435 VIESEGGICSGV 446
            I S     +G+
Sbjct: 305 EIGSLNAFLTGL 316


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 211/584 (36%), Positives = 323/584 (55%), Gaps = 21/584 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQ----QHKTLLIYSRIIHFASFADLDYAFRVFY 91
           +L + TE         IH Q ++         Q+  + +Y++  H      +  A  VF 
Sbjct: 160 VLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGH------IGVAKVVFD 213

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            + +    +W ++I   A++  A  +A+ +F +M   G V PD       L+A   +   
Sbjct: 214 GLYHRTIVSWTSIISGYAQNGKA-VEALRMFSQMRNNG-VKPDWIALVSILRAYTDVDDL 271

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
            QG+  H  + K GL  +  +  SL  FYA CG + +A   FD M   +++ WN MI  +
Sbjct: 272 EQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGY 331

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            + G  + A+ LF  M     +PD  T +S   A A + +L L  W   Y+ +    +  
Sbjct: 332 AKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKS---NYG 388

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           +D+ VN SLIDMY KCGS++ AR+VF+    +D+  W+++I+G+ LHG+   A+  +  +
Sbjct: 389 SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLY-HV 447

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           + +    PN +TF+G+L+ACNH G+V EG + F  M  ++ I P  EHY C+VDLL RAG
Sbjct: 448 MKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAG 506

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
            + EA   +  +P++P   +W +LL AC K +  V L E  A ++  S     +G YV L
Sbjct: 507 YLGEACAFIMKIPIEPGVSVWGALLSAC-KIYRCVTLGEYAANKLF-SLDPYNTGHYVQL 564

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +YAS+  W+ V  VR LM +KG+ K+ G S IEI+G    F  GD SHP  K+I+  L
Sbjct: 565 SNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDEL 624

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
             ++ +LK  G+ P Y+++ + D   + K+ +L  HSER+A+A G+++  PG  +R+ KN
Sbjct: 625 QRLERRLKEVGFVP-YTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKN 683

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR C +CH   KLIS++   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 684 LRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 188/387 (48%), Gaps = 11/387 (2%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
           FN+ S   S +        L QIH + + + L  QH   L+   +   ++   + YA ++
Sbjct: 53  FNSDSFYASLIDNSTHKRHLDQIHNRLVISGL--QHNGFLMTKLVNGSSNLGQICYARKL 110

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F +   P+ F WN +IR+ +R  +   +  V   R +    V PD  TFP+ LKAC  L 
Sbjct: 111 FDEFCYPDVFMWNAIIRSYSR--NNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELL 168

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            F      H  I K G  SDV++ N L+  YA CGH+ +A  VFD +  R++VSW  +I 
Sbjct: 169 DFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIIS 228

Query: 210 AFVQFGEFDSALKLFRRMQ-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            + Q G+   AL++F +M+    +PD     SI  A   +  L  G   H ++++     
Sbjct: 229 GYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIK---MG 285

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L  +  +  SL   Y KCG + +A+  F+ M   ++  WN++I G+A +G AE A+  F 
Sbjct: 286 LEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLF- 344

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
             ++  +  P+S+T    + A    G + E   + D  +++ N    +     L+D+ A+
Sbjct: 345 HYMISRNIKPDSVTVRSAVLASAQVGSL-ELAQWMDDYVSKSNYGSDIFVNTSLIDMYAK 403

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G+++ A  +      K D V+W +++
Sbjct: 404 CGSVEFARRVFDRNSDK-DVVMWSAMI 429


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 209/542 (38%), Positives = 308/542 (56%), Gaps = 18/542 (3%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A   +L  A R+F +    + FTW  ++    ++       ++   R +  G  +P
Sbjct: 242 ISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQN------GMLDEARRVFDG--MP 293

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +K++  +      Y+    +  QA   +F+     +V   N++I  YA  G +  A   F
Sbjct: 294 EKNSVSWNAIIAGYV-QCKRMDQAR-ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 351

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLS 252
           D M +R  +SW  +I  + Q G  + AL LF  M+   E  +  TF S  S CA +A L 
Sbjct: 352 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG   H  +++     L +   V N+L+ MYCKCG++D A  VFE + ++++ SWN++I 
Sbjct: 412 LGKQVHGRVVKA---GLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 468

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A HG  + AL  F+ +  +    P+ +T VGVLSAC+H G+V +G +YF  M  +Y I
Sbjct: 469 GYARHGFGKEALMLFESMK-KTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           T   +HY C++DLL RAG +D+A +L+ NMP +PDA  W +LL A  + H +  L E+ A
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS-RIHGNTELGEKAA 586

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           K + E E    SG+YVLLS +YA++ RW DVG +R  M D+GV K PG S +E+    H 
Sbjct: 587 KMIFEMEPD-NSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHT 645

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F  GD+ HP+  +IY FL+ +D K+K  GY    ++  + D  ++ K   L+ HSE+LA+
Sbjct: 646 FTVGDSVHPERDRIYTFLEELDLKMKKEGYVSS-TKLVLHDVEEEEKVHMLKYHSEKLAV 704

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GIL +  G PIRV KNLRVC+DCH   K IS+I    II+RD  RFHHF  G CSC D
Sbjct: 705 AFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGD 764

Query: 613 YW 614
           YW
Sbjct: 765 YW 766



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 175/401 (43%), Gaps = 71/401 (17%)

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           D A R+F  +   +S +WN +I  C  S D    A  LF++M  +     D  ++   + 
Sbjct: 66  DSALRLFNSMPRRSSISWNAMISGCL-SNDKFYLARQLFEKMPTR-----DLVSWNVMIS 119

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
            C       +  +A   +F +    DV   N+++  YA  G++  A ++FD M  ++ +S
Sbjct: 120 GCVRY----RNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSIS 175

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           WN M+ A+VQ G  + A +LF                   + A    +S       Y+ R
Sbjct: 176 WNGMLAAYVQNGRIEDARRLF------------------ESKADWELISWNCMMGGYVKR 217

Query: 264 H--------CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           +         D     D +  N++I  Y + G L  A+++FE  P RD+ +W +++ G+ 
Sbjct: 218 NRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYV 277

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSI--------------------------TFVGVLSA 349
            +G  + A + FD +  + S S N+I                          ++  +++ 
Sbjct: 278 QNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 337

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
               G +++ R++FD M    +I+     +  ++   A++G  +EALHL   M    + +
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQSGYGEEALHLFVEMKRDGERL 392

Query: 410 IWRSLLD--ACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
              +     + C + A++ L ++V  +V+++  G+ SG YV
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQVHGRVVKA--GLESGCYV 431



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 23/218 (10%)

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           +V WN+ I   ++ G+ DSAL+LF  M         ++ ++ S C              Y
Sbjct: 49  IVKWNIAITNHMRNGQCDSALRLFNSMP---RRSSISWNAMISGCLSNDKF--------Y 97

Query: 261 ILRHCDHSLVTDVLVN-NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           + R     + T  LV+ N +I    +  +L  AR +F+ MP+RD+ SWN+++ G+A +G 
Sbjct: 98  LARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGY 157

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            + A + FD +  +     NSI++ G+L+A    G + + R  F+   +   I+     +
Sbjct: 158 VKEAKEIFDEMPCK-----NSISWNGMLAAYVQNGRIEDARRLFESKADWELIS-----W 207

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            C++    +   + +A  +   MP + D V W +++  
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMISG 244



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 21/250 (8%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           +D+   N  I  +   G  D A ++F++M  RS +SWN MI   +   +F  A +LF +M
Sbjct: 47  ADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM 106

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
                 D  ++  + S C     L       A +L   D     DV+  N+++  Y + G
Sbjct: 107 PT---RDLVSWNVMISGCVRYRNLRA-----ARLL--FDQMPERDVVSWNAMLSGYAQNG 156

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            +  A+++F+ MP ++  SWN ++  +  +GR E A + F+     E  S N +     +
Sbjct: 157 YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCM-----M 211

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
                R  + + R  FD M     ++     +  ++   A+ G + EA  L    P++ D
Sbjct: 212 GGYVKRNRLVDARGIFDRMPERDEVS-----WNTMISGYAQNGELLEAQRLFEESPVR-D 265

Query: 408 AVIWRSLLDA 417
              W +++  
Sbjct: 266 VFTWTAMVSG 275



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   + +G   N S+  S+L+ C  ++ L   KQ+H + ++  L  +    +  + ++ 
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL--ESGCYVGNALLVM 438

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    ++D A+ VF  IE     +WNT+I   AR    K +A++LF+ M + G +LPD  
Sbjct: 439 YCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK-EALMLFESMKKTG-ILPDDV 496

Query: 137 TFPFALKACAYLFAFSQGKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T    L AC++     +G +  ++     G+ ++      +I      G LD A  +  N
Sbjct: 497 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 556

Query: 196 M-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
           M  E    +W  ++ A    G  +   K   +M    EPD
Sbjct: 557 MPFEPDAATWGALLGASRIHGNTELGEKAA-KMIFEMEPD 595


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 338/592 (57%), Gaps = 29/592 (4%)

Query: 38  SSLTECKSMSQL---KQIHA--QALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQ 92
           ++L+ C S+  L   ++IHA  +A R   P       I+S    +A   DL  A  VF +
Sbjct: 144 TALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSM---YAKCGDLSTAKSVFDR 200

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           I   N  +WN LI A A+S  +  QA+ LF++M E G V P + TF   L AC  + +  
Sbjct: 201 IPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHG-VRPCRATFVGVLGACNDVTSL- 258

Query: 153 QGKQAHAHIFKRGL---VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
             ++ HA I + GL   V DV + N+L++ YA CG L++A  +F  M  R  VS NVMI 
Sbjct: 259 --EKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIA 316

Query: 210 AFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYIL-----R 263
            F Q G    ++++FR M +   P D  TF S+ +AC+    L  G   H  ++     R
Sbjct: 317 TFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGR 376

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
            C    + +V+V  +L+ MY KCG+L+ A+ VF++M  ++  SWN+++   A  G+ + A
Sbjct: 377 KC---CLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEA 433

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
             +      E     +S +F+ VL AC+H GM+    D+F +M++++++ P  E+Y C+V
Sbjct: 434 AAFLRAAACE-GVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMV 492

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLLAR+G + +A  L+++MP  PDA+ WR+LL  C +   S+  +   A+Q    E    
Sbjct: 493 DLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGC-RVQGSLENAASAAEQAFNLEPQ-N 550

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK-EPGCSSIEIDGIAHEFFAGDTSHPQ 502
           +  Y LLS +Y++  + +++  +R  M ++G+ K  PG S IE+ G  HEF AGD+SHPQ
Sbjct: 551 TAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQ 610

Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
             +I   LD+++ +LK  G+ P  +   + D   + K+  L LHSE+LA+A G+++ K G
Sbjct: 611 IDKILRELDILNVELKQAGFVPS-TDGVVHDLKTEDKEEILALHSEKLAVAFGLISTKSG 669

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +P+ V KNLRVC DCH   KLIS++ +  I VRD  RFH F+ G+CSC DYW
Sbjct: 670 IPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCSCGDYW 721



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 191/396 (48%), Gaps = 29/396 (7%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           S  +++  CK  + +  IH +  R  L       L    ++  A    L  A  +F  I+
Sbjct: 46  SFAAAIRSCKDSNSVSIIHQKITRAGLGSS--AYLNNLLVLMLAKHGSLCEARSIFDAIQ 103

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + N F+WN +I A A        A+ LF +M    +V P   TF  AL AC+ L    +G
Sbjct: 104 HKNIFSWNIIISAYAHR-GHPSTALHLFAKM----DVPPTAMTFATALSACSSLGDLQRG 158

Query: 155 KQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           ++ HA I   RG+   V ++ ++   YA CG L  A  VFD +  +++VSWN +I A+ Q
Sbjct: 159 REIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQ 218

Query: 214 FG-EFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
            G     AL LF +M +    P   TF  +  AC  + +L      HA I+       V 
Sbjct: 219 SGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLE---KIHARIVETGLQFDVR 275

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           DV V N+L++MY KCGSL++AR +F  M +RD  S N +I  FA  G  + +++ F  + 
Sbjct: 276 DVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMD 335

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC---------L 382
           + E    +  TF  V++AC+  G +  G+      I++  + PVL    C         L
Sbjct: 336 L-EGLPQDDTTFASVITACSCCGALEFGK-----RIHKRVVEPVLGRKCCLPNVVVETAL 389

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           V +  + G +++A  +   M  K ++V W ++L AC
Sbjct: 390 VSMYGKCGTLEQAKAVFKAMTTK-NSVSWNAMLAAC 424


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 214/590 (36%), Positives = 318/590 (53%), Gaps = 16/590 (2%)

Query: 28  GSFNNHSSLLSSLTECKSMSQLKQIHAQALRTAL--PQQHKTLLIYSRIIHFASFADLDY 85
           G   +   L+      K++ + ++IH       L  P+    LL+      +     L  
Sbjct: 39  GGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVD----MYGKCGSLVE 94

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A RVF  +++ N F+W  L+    +S     +AI LF RM ++G  LPD+      + +C
Sbjct: 95  AKRVFDAMQHKNVFSWTMLMAGFVQS-GRGVEAIQLFHRMCQEGE-LPDRVALLKFIDSC 152

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
               A SQG++ H+     G+ SD+   N++I+ Y  CG +  A  VF  M E++++SW+
Sbjct: 153 GAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWS 212

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI AF Q    D AL  F+ MQ    E D  T+ S+  A   +  L LG   H  I+  
Sbjct: 213 TMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYA 272

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L T ++V N+L++MY KCGS D AR VF+SM ++++ SWN+++  +  +GR+  AL
Sbjct: 273 ---GLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREAL 329

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             FD + +E    PN ITFV +L  C+H G   +   +F  M  ++ ITP   H+GCL+D
Sbjct: 330 ALFDSMDLE-GVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLID 388

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           +L R+G ++EA  L+  MP+  DAV+W SLL AC   H     +   A++  + E   C+
Sbjct: 389 MLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVT-HKDEDRAARAAEEAFQREPR-CA 446

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
             Y++LS +YA+ ++W++   VRK M   GV K+ G S IEID   HEF AGD+ HP   
Sbjct: 447 AAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKS 506

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +I+  L  +  +++ +GY PD        E ++ K   L  HSE+LA+A GI +  P  P
Sbjct: 507 RIFKTLQRLMSEMRIKGYEPDRKVVIHSME-EEEKDEVLFYHSEKLAVAFGIASTPPRTP 565

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + + KNLRVC DCH   K IS +    I VRD  RFHHF  G CSC DYW
Sbjct: 566 LCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 154/318 (48%), Gaps = 12/318 (3%)

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           W + +  C   VDA  +A+ L    +EQ             ++ CA   A  +G++ H  
Sbjct: 12  WLSPVLECG-GVDAIREAVDL----LEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRW 66

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
           +    L    +++N L+  Y  CG L  A +VFD M  +++ SW +++  FVQ G    A
Sbjct: 67  MDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEA 126

Query: 221 LKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
           ++LF RM    E PD         +C     LS G   H+         + +D++  N++
Sbjct: 127 IQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAA---ASCGMDSDLVTANAI 183

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           I+MY KCGS+  A  VF  MP++++ SW+++I  F  +  A+ AL +F +L+ +E    +
Sbjct: 184 INMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFF-KLMQQEGMELD 242

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            IT+V VL A    G +  G+    V I    +   +     LV++  + G+ D+A  + 
Sbjct: 243 RITYVSVLDAYTSVGALELGK-ALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVF 301

Query: 400 SNMPMKPDAVIWRSLLDA 417
            +M ++ + V W ++L A
Sbjct: 302 DSM-VEKNVVSWNAMLAA 318


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 191/494 (38%), Positives = 296/494 (59%), Gaps = 45/494 (9%)

Query: 156 QAHAHIFKRG-------LVSDV---------YINNSLIHFYAS----------------- 182
           QAHAHIFK G       LVS V         Y++  L+ ++ S                 
Sbjct: 28  QAHAHIFKLGYGTYPSLLVSTVAAYRRCNRSYLSRRLLLWFLSLSPGVCNTNLIIESLMK 87

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQS 240
            G   LA KV  N  ++++++WN+MI  +V+  +++ ALK  + M      +P+ ++F S
Sbjct: 88  IGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFAS 147

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             +ACA L  L    W H+ ++   D  +  + +++++L+D+Y KCG ++ +R+VF S+ 
Sbjct: 148 SLAACARLGDLHHAKWVHSLMI---DAGIELNAILSSALVDVYAKCGDIETSREVFYSVK 204

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + D++ WN++I GFA HG A  A++ F  +  E   SP+SITF+G+L+AC+H G++ +G+
Sbjct: 205 RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEH-VSPDSITFLGLLTACSHCGLLGKGK 263

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            YFD+M   ++I P LEHYG +VDLL RAG + EA  L+ +MP++PD VIWRSLL +   
Sbjct: 264 VYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSS--- 320

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
             +    + E+ +  I++     SG YVLLS +Y++ ++W     VR+LMT +G+ K  G
Sbjct: 321 --SRTYKNPELGEIAIQNLSKAKSGDYVLLSNIYSTTKKWESAQKVRELMTKEGIRKAKG 378

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S +E  G+ H F AGDTSH + K IY  L+ + +K KS G+  D +   ++D  ++ K+
Sbjct: 379 KSWVEYGGVIHRFKAGDTSHIEIKAIYKVLEGLIQKTKSEGFVSD-TDLVLMDVSEEEKE 437

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +L  HSE+LA+A  IL   PG  IR+ KN+R+C DCH   K +S++ N  II+RDR RF
Sbjct: 438 ENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRF 497

Query: 601 HHFKDGSCSCMDYW 614
           H F+DG CSC DYW
Sbjct: 498 HRFEDGLCSCKDYW 511



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +V     + N  TWN +I    R+V  + +A+   + M+   ++ P+K +F  +L AC
Sbjct: 94  AKKVLRNASDQNVITWNLMIGGYVRNVQYE-EALKTLKNMLSFSDIKPNKFSFASSLAAC 152

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L      K  H+ +   G+  +  ++++L+  YA CG ++ + +VF ++    +  WN
Sbjct: 153 ARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDVSIWN 212

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  F   G    A+++F  M+     PD  TF  + +AC+    L  G     + +  
Sbjct: 213 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKG--KVYFDIMS 270

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
              S+   +    +++D+  + G +  A ++ ESMP + D+  W S++
Sbjct: 271 QRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 318



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 39/226 (17%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  S  SSL  C  +  L   K +H+  +   +  +   +L  + +  +A   D++ +  
Sbjct: 141 NKFSFASSLAACARLGDLHHAKWVHSLMIDAGI--ELNAILSSALVDVYAKCGDIETSRE 198

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VFY ++  +   WN +I   A    A  +AI +F  M E  +V PD  TF   L AC++ 
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLA-TEAIRVFSEM-EAEHVSPDSITFLGLLTACSHC 256

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +GK              VY               D+ ++ F   ++  L  +  M+
Sbjct: 257 GLLGKGK--------------VY--------------FDIMSQRFS--IQPKLEHYGAMV 286

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
           D   + G    A +L   M I  EPD   ++S+ S+        LG
Sbjct: 287 DLLGRAGRVKEAYELIESMPI--EPDVVIWRSLLSSSRTYKNPELG 330


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 306/568 (53%), Gaps = 45/568 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           +D A  +F  +   +  +WN +I    ++ +DAK  A+ LF RM+ + ++ PD+ T    
Sbjct: 246 MDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAK--ALKLFSRMLHESSMAPDEFTITSV 303

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--- 198
           L ACA L     GKQ HA+I +  +  +  + N+LI  YA  G ++ A ++ D  +E   
Sbjct: 304 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL 363

Query: 199 ------------------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
                                         R +V+W  MI  + Q G  D A+ LFR M 
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423

Query: 229 ILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
               EP+ YT  ++ S CA LA L  G   H   +R     L     V+N++I MY + G
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL---LERSSSVSNAIITMYARSG 480

Query: 288 SLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           S   AR++F+ +  R  T +W S+I+  A HG+ E A+  F+ ++      P+ IT+VGV
Sbjct: 481 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML-RAGVEPDRITYVGV 539

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC+H G V+EG+ Y+D + NE+ I P + HY C+VDLLARAG   EA   +  MP++P
Sbjct: 540 LSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEP 599

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           DA+ W SLL A C+ H +  L+E  A++++  +    SG Y  ++ VY++  RW+D   +
Sbjct: 600 DAIAWGSLLSA-CRVHKNAELAELAAEKLLSIDPN-NSGAYSAIANVYSACGRWSDAARI 657

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
            K   +K V KE G S   I    H F A D  HPQ   +Y     + E++K  G+ PD 
Sbjct: 658 WKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDL 717

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
            Q+ + D  D+ K+  L  HSE+LAIA G+++      +RV KNLRVC DCH   K IS+
Sbjct: 718 -QSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 776

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + + EIIVRD  RFHHF+DG CSC DYW
Sbjct: 777 VTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 196/457 (42%), Gaps = 79/457 (17%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ L   +P   + +  ++ ++  FA    L  A  VF ++   ++ +W  ++    R+ 
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRA- 142

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
               +AI     M   G   P + T    L +CA   A + G++ H+ + K GL S V +
Sbjct: 143 GRFGEAIKTLLDMTADG-FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPV 201

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD-------------- 218
            NS+++ Y  CG  + A+ VF+ M  RS+ SWN M+      G  D              
Sbjct: 202 ANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSI 261

Query: 219 -----------------SALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
                             ALKLF RM  +    PD +T  S+ SACA L  + +G   HA
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321

Query: 260 YILRH----------------------------CDHSLVTD--VLVNNSLIDMYCKCGSL 289
           YILR                              D S+ TD  V+   +L++ Y K G +
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
           + AR++F  M  RD+ +W ++I+G+  +GR + A+  F R ++     PNS T   VLS 
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF-RSMITCGPEPNSYTLAAVLSV 440

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPMK 405
           C     +  G+      I+   I  +LE        ++ + AR+G+   A  +   +  +
Sbjct: 441 CASLACLDYGKQ-----IHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 406 PDAVIWRSLLDACC---KKHASVVLSEEVAKQVIESE 439
            + + W S++ A     +   +V L EE+ +  +E +
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 532



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 147/352 (41%), Gaps = 80/352 (22%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY--------------------- 180
           L+ C        G+  HA   K GL++  Y+ N+L+ +Y                     
Sbjct: 33  LQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIP 92

Query: 181 ----------------ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                           A  G L  A  VF  M ER  VSW VM+    + G F  A+K  
Sbjct: 93  LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152

Query: 225 RRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M    F P  +T  ++ S+CA     ++G   H+++++     L + V V NS+++MY
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK---LGLGSCVPVANSVLNMY 209

Query: 284 CKCGS-------------------------------LDIARQVFESMPKRDLTSWNSIIL 312
            KCG                                +D+A  +FESMP R + SWN++I 
Sbjct: 210 GKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIA 269

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE--- 369
           G+  +G    ALK F R++ E S +P+  T   VLSAC + G V  G+     ++     
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA 329

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLV-SNMPMKPDAVIWRSLLDACCK 420
           YN     +    L+   A++G+++ A  ++  +M    + + + +LL+   K
Sbjct: 330 YNS----QVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK 377



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 40/222 (18%)

Query: 28  GSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           G   N  +L + L+ C S++ L   KQIH +A+R+ L  +  + +  + I  +A      
Sbjct: 426 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLL--ERSSSVSNAIITMYARSGSFP 483

Query: 85  YAFRVFYQI-ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           +A R+F Q+     + TW ++I A A+    + +A+ LF+ M+  G V PD+ T+   L 
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGE-EAVGLFEEMLRAG-VEPDRITYVGVLS 541

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           AC++    ++GK+ +  I      ++  I   + H+  +C                    
Sbjct: 542 ACSHAGFVNEGKRYYDQI-----KNEHQIAPEMSHY--AC-------------------- 574

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
              M+D   + G F  A +  RRM +  EPD   + S+ SAC
Sbjct: 575 ---MVDLLARAGLFSEAQEFIRRMPV--EPDAIAWGSLLSAC 611


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 325/586 (55%), Gaps = 20/586 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           SS +++    +S    +Q H  A++  L +      + S ++H +   A +D A +VF  
Sbjct: 117 SSAVAATAHVRSYDMGRQCHGYAIKAGLAEHP---YVCSAVLHMYCQCAHMDEAVKVFDN 173

Query: 93  IENPNSFTWNTLIRACAR--SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
           + + N F +N++I        +D     +    R + Q     D  ++   L  CA    
Sbjct: 174 VSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQW----DHVSYVAVLGHCASTKE 229

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G Q H    KR L  +VY+ ++L+  Y  C     AN+VF+ + E+++VSW  ++ A
Sbjct: 230 VVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTA 289

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q   F+ AL+LF  M++    P+ +T+    ++CAGLATL  G    A  ++     L
Sbjct: 290 YTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGL 349

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF-D 328
           +    V N+L++MY K GS++ AR+VF SMP RD+ SWNSII+G+A HGRA  A++ F D
Sbjct: 350 LP---VCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHD 406

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            L  EE   P+ +TF+GVLSAC   G+V EG  Y ++M+ E  + P  EHY C+V LL R
Sbjct: 407 MLFAEEV--PSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCR 464

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
            G +DEA   + +  +  D V WRSLL +C + + +  L   VA+Q+ + +     G YV
Sbjct: 465 VGRLDEAERFIESNCIGTDVVAWRSLLSSC-QVYRNYGLGHRVAEQIFQLKPKDV-GTYV 522

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +YA A RW+ V  VR+LM + GV KEPG S I++    H F + D  HP  +QI  
Sbjct: 523 LLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITK 582

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVF 568
            L  + +K+K  GY P+ +  A+ D  D+ K+  L  HSE+LA+A G++    G  IR+ 
Sbjct: 583 KLQELIDKIKVIGYVPNIA-VALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIM 641

Query: 569 KNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           KN+R+C DCH   KLIS      I+VRD  RFH  +DG CSC DYW
Sbjct: 642 KNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 187/376 (49%), Gaps = 25/376 (6%)

Query: 46  MSQLKQIHAQALRTA---LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWN 102
           +S  K +HA+ +R A   + Q +  + +Y +         L  A +VF  + + N  + N
Sbjct: 32  LSLGKAVHARVVRAARFDVVQYNNLIALYVKC------GRLGLARQVFDAMPSRNPVSGN 85

Query: 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
            L+   A S   + +  +   R+ + G    +++    A+ A A++ ++  G+Q H +  
Sbjct: 86  LLMSGYASS--GRHRDALALLRVADFG---LNEYVLSSAVAATAHVRSYDMGRQCHGYAI 140

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K GL    Y+ ++++H Y  C H+D A KVFDN+   ++ ++N MI+ F+  G+ D +  
Sbjct: 141 KAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTS 200

Query: 223 LFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           + R M + + + D  ++ ++   CA    + LG   H   L+     L  +V V ++L+D
Sbjct: 201 IVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALK---RRLELNVYVGSALVD 257

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KC     A +VFE +P++++ SW +I+  +  +   E AL+ F  + + E   PN  
Sbjct: 258 MYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEM-EGVRPNEF 316

Query: 342 TFVGVLSACNHRGMVSEGR--DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
           T+   L++C     +  G       +    + + PV      L+++ +++G++++A  + 
Sbjct: 317 TYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCN---ALMNMYSKSGSVEDARRVF 373

Query: 400 SNMPMKPDAVIWRSLL 415
            +MP + D V W S++
Sbjct: 374 LSMPCR-DVVSWNSII 388


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 212/567 (37%), Positives = 314/567 (55%), Gaps = 14/567 (2%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           Q+HA ALR         +   +  ++F +   L  A R+F ++ N N   WN ++     
Sbjct: 141 QLHALALRFGYLPDDAFVSCAALDMYFKT-GCLALARRLFDEMPNRNVVAWNAVMTNAV- 198

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
            +D +P   V     +     +P+  +      ACA +   S G+Q +  + K G   DV
Sbjct: 199 -LDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDV 257

Query: 171 YINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF---RRM 227
            ++NS++ FY  C  +  A  VFD M  R+ VSW  M+ A+ Q G  + A  ++   RR 
Sbjct: 258 SVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRA 317

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
               EP  +   S+ + CAGL  L LG   HA  +R C  S   ++ V ++L+DMY KCG
Sbjct: 318 GE--EPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDS---NIFVASALVDMYGKCG 372

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            ++ A QVF  MP+R+L +WN++I G+A  G A  AL  FD++++ +  +PN IT V VL
Sbjct: 373 GIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVL 432

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           +AC+  G+  EG + F  M   + I P +EHY C+VDLL RAG  + A  ++  MPM+P 
Sbjct: 433 TACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPS 492

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
             +W +LL   CK H    L    A+++ E +    SG +VLLS + ASA RW +   VR
Sbjct: 493 ISVWGALLGG-CKMHGKTELGRIAAEKLFELDPQD-SGNHVLLSNMLASAGRWAEATDVR 550

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
           K M + G+ K+PG S I    + H F A DT+H   ++I   L  +  ++++ GY PD +
Sbjct: 551 KEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPD-T 609

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           Q A+ D  ++ K+S +  HSE+LA+A G++ + PG+PIR+ KNLR+C DCH   K IS I
Sbjct: 610 QYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGI 669

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
              EIIVRD   FHHFK+  CSC DYW
Sbjct: 670 AGREIIVRDNNMFHHFKNYECSCKDYW 696


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 183/458 (39%), Positives = 276/458 (60%), Gaps = 8/458 (1%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H    K G+VS   ++ +L   Y     +  A ++FD   E++L SWN MI    Q G  
Sbjct: 155 HGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLT 214

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
           D+A+ LF+ MQ     P+  T  SI SACA +  LSLG W H+ I     +   ++V V+
Sbjct: 215 DAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIK---SNRFESNVYVS 271

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
            +LIDMY KCGS+ +AR++F+ MP+++  +WN++I G+ LHG  + ALK F  ++   S 
Sbjct: 272 TALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDML-SSSV 330

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P  +TF+ VL AC+H G+V EG   F  M++++   P+ EHY C+VD+L RAG + +AL
Sbjct: 331 KPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKAL 390

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             +  MP++P   +W +LL AC   H    L+   ++++ E +     G YVL+S +Y+ 
Sbjct: 391 EFIKAMPVEPGPPVWGALLGAC-MIHKDTNLAHVASEKLFELDPENI-GYYVLMSNIYSV 448

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
            R++     VR++   K + K PGC+ IEI  + H F +GD SHPQ+K IY  LD +  K
Sbjct: 449 ERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGK 508

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +   G+  + +   + D  ++ K+ ++++HSE+LAIA G+++ +PG  IR+ KNLRVC D
Sbjct: 509 MTEAGFQTE-TTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLD 567

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH  TK +S+I    I+VRD  RFHHFKDG CSC DYW
Sbjct: 568 CHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177
           +I +F  M+       D  T    L A A L     G Q      K G  S V +   LI
Sbjct: 14  SIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLI 73

Query: 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYT 237
             ++ CG +++A  +F  + ++ L+S N MI  F   GE + +++LF+ +    E     
Sbjct: 74  SLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGE----- 128

Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDH------SLVTDVLVNNSLIDMYCKCGSLDI 291
            +  +S   GL  +    + H+Y L +C H       +V+   V+ +L  +YC+   +  
Sbjct: 129 -RVSSSTIVGLIPV-YSPFGHSY-LCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIF 185

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           ARQ+F+   ++ L SWN++I G   +G  +AA+  F  +  + + +PN +T   +LSAC 
Sbjct: 186 ARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTM-QKNNVNPNPVTVTSILSACA 244

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIW 411
             G +S G ++   +I        +     L+D+ A+ G+I  A  L   MP K + V W
Sbjct: 245 QIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEK-NEVTW 302

Query: 412 RSLLDA 417
            +++  
Sbjct: 303 NAMISG 308



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 27/236 (11%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPD 134
           +    ++ +A ++F +       +WN +I  C ++   DA   AI LFQ M ++ NV P+
Sbjct: 177 YCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDA---AISLFQTM-QKNNVNPN 232

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
             T    L ACA + A S G+  H+ I      S+VY++ +LI  YA CG + +A ++FD
Sbjct: 233 PVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFD 292

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSL 253
            M E++ V+WN MI  +   G    ALKLF  M     +P G TF S+  AC        
Sbjct: 293 LMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYAC-------- 344

Query: 254 GMWAHAYILRHCD---HSLVTDVLVN------NSLIDMYCKCGSLDIARQVFESMP 300
              +HA +++  D   H++V D            ++D+  + G L  A +  ++MP
Sbjct: 345 ---SHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMP 397


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 224/637 (35%), Positives = 333/637 (52%), Gaps = 83/637 (13%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
           +  L+ +H++ +   L  ++ + L    +  +AS  D+  A +VF +I   N    N +I
Sbjct: 56  LKTLRTVHSRIISEDL--RYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMI 113

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
           R+   +   + + I +F  M    +V PD +TFP  LKAC+       GK+ H    K G
Sbjct: 114 RSYVNNGFYR-EGIQVFGTMC-SCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVG 171

Query: 166 LVSDVYIN-------------------------------NSLIHFYASCGHLDLANKV-- 192
           L S +++                                NSL+  YA     D A +V  
Sbjct: 172 LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCR 231

Query: 193 -----------------------------------FDNMLERSLVSWNVMIDAFVQFGEF 217
                                              F  M ++SLVSWNVMI  +++    
Sbjct: 232 EMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMP 291

Query: 218 DSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
             A++L+  M+   FEPD  +  S+  AC   + LSLG   H YI R     L+ ++L+ 
Sbjct: 292 VEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK---KLIPNLLLE 348

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           N+LIDMY KCG LD AR VFE+M  RD+ SW ++I  +   GR   A+  F ++  +   
Sbjct: 349 NALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQ-DSGL 407

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+SI FV  L+AC+H G++ EGR  F +M + Y ITP LEH  C+VDLL RAG + EA 
Sbjct: 408 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 467

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             +  MPM+P+  +W +LL AC + H++  +    A ++ +      SG YVLLS +YA 
Sbjct: 468 KFIQEMPMEPNERVWGALLGAC-RVHSNTDIGLLAADKLFQL-APEQSGYYVLLSNIYAK 525

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW +V  +R +M  KG+ K PG S++E++ I H F  GD SHPQ+ +IY  LD++ +K
Sbjct: 526 AGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKK 585

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP---GMPIRVFKNLRV 573
           +K  GY PD S++A+ D  ++ K++ L +HSE+LAI   ++N +       IR+ KNLR+
Sbjct: 586 MKELGYVPD-SESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRI 644

Query: 574 CKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           C DCH   KLIS+I + EII+RD  RFH F+ G CSC
Sbjct: 645 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 332/625 (53%), Gaps = 58/625 (9%)

Query: 26  NEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSR--IIHFASF 80
           N+G   N  +  S L+ C S S LK    +HA+ LR     +H   L++    I  +A  
Sbjct: 271 NQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILR----MEHSLDLVFGNGLIDMYAKC 326

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             LD A RVF  +   +  +WN+LI            A++LF +M  + +V+ D+   P 
Sbjct: 327 GCLDLAKRVFKSLREHDHISWNSLITGVVH-FGLGEDALILFNQM-RRSSVVLDEFILPT 384

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF------- 193
            L  C+     S G+  H +  K G+ S   + N++I  YA CG  D A+ VF       
Sbjct: 385 ILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRN 444

Query: 194 ------------------------DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
                                   D M ER++V+WN M+  +VQ G  +  LKL+  M+ 
Sbjct: 445 TISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRS 504

Query: 230 -LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              +PD  TF +   ACA LA + LGM     +       L  +V V NS++ MY +CG 
Sbjct: 505 NGVQPDWITFTTSIRACADLAIVKLGM---QVVTHATKFGLSLNVSVANSIVTMYSRCGL 561

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +  A+  F+S+  +DL SWN+++  FA +G     +  F+ ++  E   PN I++V VLS
Sbjct: 562 IKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTEC-KPNHISYVSVLS 620

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
            C+H G+V+EG+ YFD M   + I+P  EH+ C+VDLL RAG +++A  L+  MP KP+A
Sbjct: 621 GCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNA 680

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
            +W +LL + C+ H  + L+E  AK+++E +     G YVLLS +Y+ +   ++V  +RK
Sbjct: 681 TVWSALLGS-CRVHHDLRLAETAAKKLMELDVEGSEG-YVLLSNMYSESGELDNVADMRK 738

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
           LM  KG+    GCS IE+D   H F   +TSHPQ K++Y  L   +E +K    T  Y  
Sbjct: 739 LMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKL---EEMMKMIEDTGKYIT 795

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
                 ++     S + HSE+LA A G+LNL   MPI V KNLRVC DCH V KL+S + 
Sbjct: 796 ------VESSVHRSKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVT 849

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDY 613
           + E+I+RD  RFHHFKDG CSC DY
Sbjct: 850 SRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 197/482 (40%), Gaps = 73/482 (15%)

Query: 1   MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFN-NHSSLLSSLTECKSMSQLK-QIHAQALR 58
           M     Q G  +    + S+   + N+G  N +  S  S +  C S+   +  I   AL 
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALV 172

Query: 59  TALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118
           + L    +T +  S +  +    D+D A  VF+ IE P+ F WN++I   ++ +    +A
Sbjct: 173 SKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQ-MYGPYKA 231

Query: 119 IVLFQRMIEQGNVL------------------------------PDKHTFPFALKACAYL 148
           + +F RM E+  V                               P+  T+   L ACA  
Sbjct: 232 LQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACAST 291

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G   HA I +     D+   N LI  YA CG LDLA +VF ++ E   +SWN +I
Sbjct: 292 SDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLI 351

Query: 209 DAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
              V FG  + AL LF   RR  ++   D +   +I   C+G    S G   H Y ++  
Sbjct: 352 TGVVHFGLGEDALILFNQMRRSSVVL--DEFILPTILGVCSGPDYASTGELLHGYTIK-- 407

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
              + +   V N++I MY KCG  D A  VF  MP R+  SW ++I  F+  G    A  
Sbjct: 408 -SGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARG 466

Query: 326 YFDRL--------------VVEESFS----------------PNSITFVGVLSACNHRGM 355
           YFD +               V+  FS                P+ ITF   + AC    +
Sbjct: 467 YFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAI 526

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           V  G         ++ ++  +     +V + +R G I EA +   ++  K D + W ++L
Sbjct: 527 VKLGMQVV-THATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDK-DLISWNAML 584

Query: 416 DA 417
            A
Sbjct: 585 AA 586



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 192/445 (43%), Gaps = 95/445 (21%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDY-AFRVFYQIENPNSFTWNTLIRA- 107
           +++HAQ + + L      L   + ++H  S   L + AF+VF +  + N FTWNT+IRA 
Sbjct: 28  RKLHAQLILSGLDSSLFLL---NNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRAL 84

Query: 108 --CARSVDAKP--------------------------------QAIVLFQRMIEQGNVLP 133
              +R  DA+                                 +   L  R    G    
Sbjct: 85  VSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNY 144

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN--- 190
           D  +F   +KAC  L       Q HA + K G   +  I NS++  Y  CG +DLA    
Sbjct: 145 DPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF 204

Query: 191 ----------------------------KVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
                                       ++F+ M ER  VSWN +I  F Q G     L 
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 223 LFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           +F  M    F P+  T+ S+ SACA  + L  G   HA ILR  +HSL  D++  N LID
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILR-MEHSL--DLVFGNGLID 321

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL-----VVEESF 336
           MY KCG LD+A++VF+S+ + D  SWNS+I G    G  E AL  F+++     V++E  
Sbjct: 322 MYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFI 381

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG----CLVDLLARAGNI 392
            P       +L  C+     S G      +++ Y I   +         ++ + A+ G+ 
Sbjct: 382 LPT------ILGVCSGPDYASTGE-----LLHGYTIKSGMGSSAPVGNAIITMYAKCGDT 430

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDA 417
           D+A  +   MP++ + + W +++ A
Sbjct: 431 DKADLVFRLMPLR-NTISWTAMITA 454



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 158/390 (40%), Gaps = 96/390 (24%)

Query: 141 ALKACAYLFAFSQ-GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199
           A K C++        ++ HA +   GL S +++ N+L+H Y++CG    A +VF     R
Sbjct: 13  AFKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHR 72

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-----------------------FEP--- 233
           ++ +WN MI A V       A KLF  M +                        FE    
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 234 ------------DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
                       D ++F S+  AC  L    L +  HA + +        +  + NS++ 
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSK---LGFGMETCIQNSVVG 189

Query: 282 MYCKCGSLDIAR-------------------------------QVFESMPKRDLTSWNSI 310
           MY KCG +D+A                                Q+F  MP+RD  SWN++
Sbjct: 190 MYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTL 249

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINE 369
           I  F+ HG     L  F  +   + FSPN +T+  VLSAC     +  G   +  ++  E
Sbjct: 250 ISIFSQHGFGVQCLAMFVEM-CNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRME 308

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK--------- 420
           +++  V  +   L+D+ A+ G +D A  +  ++  + D + W SL+              
Sbjct: 309 HSLDLVFGN--GLIDMYAKCGCLDLAKRVFKSLR-EHDHISWNSLITGVVHFGLGEDALI 365

Query: 421 -----KHASVVLSEEVAKQVIESEGGICSG 445
                + +SVVL E +   ++    G+CSG
Sbjct: 366 LFNQMRRSSVVLDEFILPTIL----GVCSG 391


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 316/571 (55%), Gaps = 36/571 (6%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS-- 111
           A+ L   +P++   + + + I  +     LD A  +F ++   N  TW  ++   AR+  
Sbjct: 167 ARKLFDMMPEK-DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGK 225

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ-GKQAHAH-IFKRGLVSD 169
           VD    A  LF+       V+P+++   +     A L  ++  G+   A  +F    V  
Sbjct: 226 VDV---ARKLFE-------VMPERNEVSWT----AMLLGYTHSGRMREASSLFDAMPVKP 271

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V + N +I  +   G +D A +VF  M ER   +W+ MI  + + G    AL LFRRMQ 
Sbjct: 272 VVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQ- 330

Query: 230 LFEPDGYTFQ-----SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
               +G         S+ S C  LA+L  G   HA ++R        D+ V + LI MY 
Sbjct: 331 ---REGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRS---EFDQDLYVASVLITMYV 384

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCG+L  A+QVF   P +D+  WNS+I G++ HG  E AL  F  +       P+ +TF+
Sbjct: 385 KCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMC-SSGVPPDDVTFI 443

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GVLSAC++ G V EG + F+ M  +Y + P +EHY CLVDLL RA  ++EA+ LV  MPM
Sbjct: 444 GVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPM 503

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +PDA++W +LL AC + H  + L+E   +++ + E    +G YVLLS +YA   RW DV 
Sbjct: 504 EPDAIVWGALLGAC-RTHMKLDLAEVAVEKLAQLEPK-NAGPYVLLSNMYAYKGRWRDVE 561

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-SHPQTKQIYGFLDLIDEKLKSRGYT 523
           ++R+ +  + VTK PGCS IE++   H F  GD+  HP+   I   L+ +   L+  GY 
Sbjct: 562 VLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYC 621

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           PD S   + D  ++ K  SL  HSE+LA+A G+L +  GMPIRV KNLRVC DCH   KL
Sbjct: 622 PDGS-FVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKL 680

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I+++   EII+RD  RFHHFKDG CSC DYW
Sbjct: 681 IAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 156/339 (46%), Gaps = 35/339 (10%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L  A RVF  + + N  +W +++R   R+ D   +A  LF  M       P K+   + +
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDV-AEAERLFWHM-------PHKNVVSWTV 153

Query: 143 KACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
                L    +G+   A  +F      DV    ++I  Y   G LD A  +FD M +R++
Sbjct: 154 MLGGLL---QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV 210

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           V+W  M+  + + G+ D A KLF   +++ E +  ++ ++           LG + H+  
Sbjct: 211 VTWTAMVSGYARNGKVDVARKLF---EVMPERNEVSWTAML----------LG-YTHSGR 256

Query: 262 LRHC----DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           +R      D   V  V+V N +I  +   G +D AR+VF+ M +RD  +W+++I  +   
Sbjct: 257 MREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERK 316

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NEYNITPVL 376
           G    AL  F R+   E  + N  + + VLS C     +  G+     ++ +E++    L
Sbjct: 317 GYELEALGLFRRM-QREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQD--L 373

Query: 377 EHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
                L+ +  + GN+  A  + +  P+K D V+W S++
Sbjct: 374 YVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMI 411



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 149/349 (42%), Gaps = 68/349 (19%)

Query: 77  FASFADLDYAFRVFYQIENPNSF--TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
           +A    LD+A +VF +   P+    +WN ++ A   +   + +A++LF++M       P 
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPR-EALLLFEKM-------PQ 83

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           ++T  +                                 N LI  +   G L  A +VFD
Sbjct: 84  RNTVSW---------------------------------NGLISGHIKNGMLSEARRVFD 110

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
            M +R++VSW  M+  +V+ G+   A +LF  M            S T    GL  L  G
Sbjct: 111 TMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMP------HKNVVSWTVMLGGL--LQEG 162

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
               A  L   D     DV+   ++I  YC+ G LD AR +F+ MPKR++ +W +++ G+
Sbjct: 163 RVDDARKL--FDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGY 220

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A +G+ + A K F+  V+ E    N +++  +L    H G + E    FD M       P
Sbjct: 221 ARNGKVDVARKLFE--VMPER---NEVSWTAMLLGYTHSGRMREASSLFDAM-------P 268

Query: 375 VLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
           V     C  ++      G +D+A  +   M  + D   W +++    +K
Sbjct: 269 VKPVVVCNEMIMGFGLNGEVDKARRVFKGMKER-DNGTWSAMIKVYERK 316



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 27/243 (11%)

Query: 177 IHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
           I  YA  G LD A KVFD   +  R++ SWN M+ A+ +  +   AL LF +M       
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMP------ 82

Query: 235 GYTFQSITSACAGLAT--LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
               Q  T +  GL +  +  GM + A   R  D     +V+   S++  Y + G +  A
Sbjct: 83  ----QRNTVSWNGLISGHIKNGMLSEAR--RVFDTMPDRNVVSWTSMVRGYVRNGDVAEA 136

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
            ++F  MP +++ SW  ++ G    GR + A K FD +        + +    ++     
Sbjct: 137 ERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP-----EKDVVAVTNMIGGYCE 191

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
            G + E R  FD M     +T     +  +V   AR G +D A  L   MP + + V W 
Sbjct: 192 EGRLDEARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKLFEVMPER-NEVSWT 245

Query: 413 SLL 415
           ++L
Sbjct: 246 AML 248



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 51/244 (20%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
            +F   + EG   N  SL+S L+ C S++ L   KQ+HAQ +R+   Q    L + S +I
Sbjct: 324 GLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQD---LYVASVLI 380

Query: 76  -HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
             +    +L  A +VF +    +   WN++I   ++      +A+ +F  M   G V PD
Sbjct: 381 TMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH-GLGEEALNVFHDMCSSG-VPPD 438

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
             TF   L AC+Y      GK       K GL                        ++F+
Sbjct: 439 DVTFIGVLSACSY-----SGK------VKEGL------------------------ELFE 463

Query: 195 NM-----LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA 249
            M     +E  +  +  ++D   +  + + A+KL  +M +  EPD   + ++  AC    
Sbjct: 464 TMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPM--EPDAIVWGALLGACRTHM 521

Query: 250 TLSL 253
            L L
Sbjct: 522 KLDL 525


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 332/588 (56%), Gaps = 17/588 (2%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  ++L+ L  C   S+L   + +H  +LR +   Q+K L+  + I  +A    L +A  
Sbjct: 415 NEVTILNLLPACLEESELLSLRALHGYSLRHSF--QYKELINNAFIAAYAKCGSLVFAEH 472

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF+ +   +  +WN +I   A++ D   +A+  +  M   G +LPD  +    L AC  L
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDP-IKALDFYFEMTRLG-ILPDDFSIVSLLLACGRL 530

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GK+ H  + + GL  + ++  SL+  Y  C         F+ M +++ V WN M+
Sbjct: 531 GLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAML 590

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q    + AL LFR+M     EPD     SI  AC+ L+ L LG   H + L++   
Sbjct: 591 SGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN--- 647

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           SL+ D  V  SL+DMY K G L  ++++F  +  +++ SWN +I GF +HG+   A++ F
Sbjct: 648 SLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELF 707

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +   +   P+  TF+GVL AC H G+VSEG +Y   M   Y + P LEHY C++D+L 
Sbjct: 708 EDMKRSDK-QPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG 766

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG ++EAL+ ++ MP +PDA IW SLL +    +  + + E+ A++++  E       Y
Sbjct: 767 RAGRLNEALNFINEMPEEPDAKIWSSLLSSSIT-YVDLEMGEKFAEKLLALEANKADS-Y 824

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +LLS +YA+A +W+ V +VR+ M D  + K+ GCS IE+ G  + F AG+ S+P + +I 
Sbjct: 825 ILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIR 884

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDD-GKQSSLRLHSERLAIALGILNLKPGMPIR 566
              + +++++   GYTPD S   ++ EL++  K+  L+ HSE++AI  G LN K G  +R
Sbjct: 885 KMWNRLEKQIVEIGYTPDCS--CVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLR 942

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + KNLR+C+DCH   K IS+    EI++RD  RFHHFK G CSC DYW
Sbjct: 943 ISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 14/269 (5%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF ++ N N F WN L+    R+ +   +AI  F  +I      PD  TFP  +KAC   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRN-ELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGK 223

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GK  H    K GL+ D+++ N++I  Y  CG LD A ++FD M E++L+SWN +I
Sbjct: 224 CDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLI 283

Query: 209 DAFVQFGEFDSALKLFRRMQILFE------PDGYTFQSITSACAGLATLSLGMWAHAYIL 262
             F + G +  A + FR    L E      PD  T  ++   C+G   + +GM  H   +
Sbjct: 284 RGFSENGFWLEAYRAFRS---LLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV 340

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           +     LV +++V N+LIDMY KCG L  A  +F  +  + + SWNS+I  ++  G    
Sbjct: 341 K---LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFE 397

Query: 323 ALKYFDRLVVEESF-SPNSITFVGVLSAC 350
                 ++ +EE     N +T + +L AC
Sbjct: 398 TFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 151/317 (47%), Gaps = 13/317 (4%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           K +H  A++  L      L + + +I  +     LD A  +F ++   N  +WN+LIR  
Sbjct: 230 KSVHGMAVKMGLIMD---LFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGF 286

Query: 109 ARSVDAKPQAIVLFQRMIEQGN-VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
           + +     +A   F+ ++E G+ ++PD  T    L  C+       G   H    K GLV
Sbjct: 287 SEN-GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLV 345

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            ++ + N+LI  Y+ CG L  A  +F  +  +S+VSWN MI A+ + G       L R+M
Sbjct: 346 HELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKM 405

Query: 228 QI---LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            +   L E +  T  ++  AC   + L      H Y LR   HS     L+NN+ I  Y 
Sbjct: 406 WMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLR---HSFQYKELINNAFIAAYA 462

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCGSL  A  VF  M  + ++SWN++I G A +G    AL ++  +       P+  + V
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEM-TRLGILPDDFSIV 521

Query: 345 GVLSACNHRGMVSEGRD 361
            +L AC   G++  G++
Sbjct: 522 SLLLACGRLGLLQYGKE 538



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            D  +N  LI  Y+ CG+   +  VFD +L ++L  WN ++  +V+   +D A+  F  +
Sbjct: 141 GDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 228 QIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
             +  F+PD +TF  +  AC G   + LG   H   ++     L+ D+ V N++I +Y K
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVK---MGLIMDLFVGNAMIALYGK 257

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFV 344
           CG LD A ++F+ MP+++L SWNS+I GF+ +G    A + F  L+   +   P+  T V
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +L  C+  G V  G     + + +  +   L     L+D+ ++ G + EA  L   +  
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAV-KLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIEN 376

Query: 405 KPDAVIWRSLLDA 417
           K   V W S++ A
Sbjct: 377 K-SVVSWNSMIGA 388



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 7/311 (2%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           IH  A++  L   H+ ++  + I  ++    L  A  +F +IEN +  +WN++I A +R 
Sbjct: 335 IHGMAVKLGLV--HELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSRE 392

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
                   +L +  +E+  +  ++ T    L AC         +  H +  +        
Sbjct: 393 GFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKEL 452

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
           INN+ I  YA CG L  A  VF  M  +S+ SWN +I    Q G+   AL  +  M  L 
Sbjct: 453 INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLG 512

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
             PD ++  S+  AC  L  L  G   H ++LR   + L  +  V  SL+ +Y  C    
Sbjct: 513 ILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR---NGLEMNSFVAVSLLSLYFHCSKPF 569

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
             R  FE+M  ++   WN+++ G++ +     AL  F R ++ +   P+ I    +L AC
Sbjct: 570 YGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLF-RQMLSDGLEPDEIAIASILGAC 628

Query: 351 NHRGMVSEGRD 361
           +    +  G++
Sbjct: 629 SQLSALGLGKE 639



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 13/266 (4%)

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           I    + G+ + AL   +R        GY       A  G+     G + +  I R  D 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWK--NNAGYDLAQRKEA-MGMLLQKCGQYKNVEIGRKLDE 131

Query: 268 SLVT------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            L        D ++N  LI MY  CG    +R VF+ +  ++L  WN+++ G+  +   +
Sbjct: 132 MLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYD 191

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F  L+    F P++ TF  ++ AC  +  +  G+    + +    I  +      
Sbjct: 192 EAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVG-NA 250

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           ++ L  + G +DEA+ L   MP + + + W SL+     ++   + +    + ++ES  G
Sbjct: 251 MIALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRG-FSENGFWLEAYRAFRSLLESGDG 308

Query: 442 ICSGVYVLLSRVYASARRWN-DVGLV 466
           +   V  +++ +   +   N DVG+V
Sbjct: 309 LIPDVATMVTLLPVCSGEGNVDVGMV 334


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/456 (39%), Positives = 274/456 (60%), Gaps = 17/456 (3%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA-------- 220
           D  +  +L+  +A CG +    KVFD +    L +WN ++ A+ +    D A        
Sbjct: 176 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADA 235

Query: 221 -LKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
            L++F RM  +  +P+  T  ++  AC  L  +S G+WAH Y ++     L  + +V  +
Sbjct: 236 ILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKR---RLAVNCIVATA 292

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L++MY  CG LD+A QVF +   RD   +N+++ G A+HG   AAL  FDR+   E    
Sbjct: 293 LVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMH-GEGVPV 351

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + +T + V+ AC H G+V EG DYFD M  E+ I P +EHYGC+VD+L+RAG +++A  L
Sbjct: 352 DGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKL 411

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MP+ P+A I+RSL+ AC   H  + L +++  +++  E    SG +VL+S  YA+  
Sbjct: 412 IHGMPIVPNAAIYRSLIRAC-GIHGKLELGKKMIAELMRLEPDD-SGNHVLISNFYATTN 469

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW+D    RK M   G+ K PG S ++I+G+ HEF  GD +HP +K+IY  ++ I+ +L 
Sbjct: 470 RWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLS 529

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             G+    S +A+ D  ++ K  +L  HSERLAIA  ++   PG PIR+ KNLRVC DCH
Sbjct: 530 ECGHRSSTS-SALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCH 588

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           E  KL+SR++  EI++RDR RFHHF+DG CSC D+W
Sbjct: 589 ESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 118/270 (43%), Gaps = 17/270 (6%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR--------SVDAKPQAIVLFQRMIEQ 128
           FA    +    +VF +I NP+   WN L+ A AR        +  A    + +F RM+  
Sbjct: 187 FARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSL 246

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
             + P++ T    + AC  L A S G  AH +  KR L  +  +  +L+  YA CG LDL
Sbjct: 247 A-IKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDL 305

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSAC-- 245
           A +VF    +R    +N M+      G   +AL LF RM     P DG T  S+  AC  
Sbjct: 306 AEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAH 365

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDL 304
           AGL    L  +    I    +  +   +     ++DM  + G L+ A ++   MP   + 
Sbjct: 366 AGLVDEGLDYFDRMEI----EFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNA 421

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             + S+I    +HG+ E   K    L+  E
Sbjct: 422 AIYRSLIRACGIHGKLELGKKMIAELMRLE 451


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/574 (35%), Positives = 312/574 (54%), Gaps = 51/574 (8%)

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           DL  A  +   +  P    WN +I    R      +A   F+RM   G +  D++T+   
Sbjct: 232 DLVAARELLDGLTYPIDVAWNAMISGYVRR-GLYEEAFDTFRRMHSMG-IQEDEYTYTSL 289

Query: 142 LKACA----YLFAFSQGKQAHAHIFKRGLVSDVY-----INNSLIHFYA----------- 181
           + AC      +  F+ G+Q H +I  R +V   +     +NN+LI FY            
Sbjct: 290 ISACGSCNEKMGMFNCGRQVHGYIL-RTVVEPSHHFVLSVNNALITFYTKYDRMIEARRV 348

Query: 182 --------------------SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
                               +   ++ AN +F  M ER++++W VMI    Q G  +  L
Sbjct: 349 FDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGL 408

Query: 222 KLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280
           KLF +M+    EP  Y F    +AC+ L +L  G   H+ ++R    S ++     N+LI
Sbjct: 409 KLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLS---AGNALI 465

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
            MY +CG ++ A  VF +MP  D  SWN++I   A HG    A++ F++++ +E   P+ 
Sbjct: 466 TMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMM-KEDILPDR 524

Query: 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400
           ITF+ +L+ACNH G++ EGR YFD M   Y ITP  +HY  L+DLL RAG   +A  ++ 
Sbjct: 525 ITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIK 584

Query: 401 NMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460
           +MP +  A IW +LL A C+ H ++ L  + A +++E   G   G Y++LS +YA+  +W
Sbjct: 585 SMPFEAGAPIWEALL-AGCRIHGNMELGIQAADRLLELIPGQ-DGTYIILSNMYAALGQW 642

Query: 461 NDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR 520
           ++V  VR LM ++GV KEPGCS +E++ + H F   D  HP+ + +Y +L  +  ++K  
Sbjct: 643 DEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKL 702

Query: 521 GYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           GY PD ++  + D   + K+ SL  HSE+LA+  GI+ L  G  IRVFKNLR+C DCH  
Sbjct: 703 GYVPD-TKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNA 761

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            K IS++   EI+VRDR RFHHFK+G CSC +YW
Sbjct: 762 FKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 189/436 (43%), Gaps = 56/436 (12%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFA-DLDYAFRVFYQIEN----PNSFTWNTLIRAC 108
           AQ L  A P   +  + Y+ +I   S   D   A  +F Q++     P+ FT+++++ A 
Sbjct: 90  AQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSAL 149

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP----FALKACAYLFAFSQGKQAHAHIFKR 164
           +   D +    +L   +I+ G +L    T      +   A + L   SQ   +   +F  
Sbjct: 150 SLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDE 209

Query: 165 GLVSDVYINN--SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
              + +Y  +  ++I  Y     L  A ++ D +     V+WN MI  +V+ G ++ A  
Sbjct: 210 TPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFD 269

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAG----LATLSLGMWAHAYILRHC---DHSLVTDVL 274
            FRRM  +  + D YT+ S+ SAC      +   + G   H YILR      H  V    
Sbjct: 270 TFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLS-- 327

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI------------------------ 310
           VNN+LI  Y K   +  AR+VF+ MP RD+ SWN++                        
Sbjct: 328 VNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERN 387

Query: 311 -------ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
                  I G A +G  E  LK F+++   E   P    F G ++AC+  G +  G+   
Sbjct: 388 VLTWTVMISGLAQNGFGEEGLKLFNQM-KSEGLEPCDYAFAGAITACSVLGSLDNGQQIH 446

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             +I   + +  L     L+ + +R G ++ A  +   MP   D+V W +++ A   +H 
Sbjct: 447 SQVIRLGHDSG-LSAGNALITMYSRCGVVESAESVFLTMPYV-DSVSWNAMI-AALAQHG 503

Query: 424 SVVLSEEVAKQVIESE 439
             V + E+ +Q+++ +
Sbjct: 504 HGVKAIELFEQMMKED 519



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 58/261 (22%)

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--------------- 198
            +  HAHI   G   + +I N LI+ Y    ++  A K+FD + +               
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 199 ------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
                             R  VS+N MI A+    +  +AL LF +M+   F PD +TF 
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL---VNNSLIDMYCKCGSLDI----- 291
           S+ SA + +A        H  +L HC+   +  +L   V N+L+  Y  C S  +     
Sbjct: 144 SVLSALSLIADEE----RHCQML-HCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQ 198

Query: 292 ----ARQVFESMPKRDL--TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
               AR+VF+  PK  +   SW ++I G+  +    AA +  D L       P  + +  
Sbjct: 199 LMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTY-----PIDVAWNA 253

Query: 346 VLSACNHRGMVSEGRDYFDVM 366
           ++S    RG+  E  D F  M
Sbjct: 254 MISGYVRRGLYEEAFDTFRRM 274



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 73/338 (21%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALR----TALPQQHKTLLIYS 72
           +FN  ++EG      +   ++T C  +  L   +QIH+Q +R    + L   +  + +YS
Sbjct: 410 LFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYS 469

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           R         ++ A  VF  +   +S +WN +I A A+      +AI LF++M+++ ++L
Sbjct: 470 RC------GVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGV-KAIELFEQMMKE-DIL 521

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD+ TF   L AC            HA + K G            H+             
Sbjct: 522 PDRITFLTILTAC-----------NHAGLIKEGR-----------HY------------- 546

Query: 193 FDNMLERSLVS-----WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247
           FD M  R  ++     +  +ID   + G F  A  + + M   FE     ++++ + C  
Sbjct: 547 FDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMP--FEAGAPIWEALLAGCRI 604

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT-- 305
              + LG+ A   +L        T ++++N    MY   G  D   +V   M +R +   
Sbjct: 605 HGNMELGIQAADRLLELIPGQDGTYIILSN----MYAALGQWDEVARVRLLMRERGVKKE 660

Query: 306 ---SWNSI-------ILGFALHGRAEAALKYFDRLVVE 333
              SW  +       ++  A H   +A   Y  +LV E
Sbjct: 661 PGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNE 698


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 342/592 (57%), Gaps = 31/592 (5%)

Query: 35  SLLSSLTECKSMSQL---KQIHAQALRTALPQQHK---TLL-IYSRIIHFASFADLDYAF 87
           SL+S L     +  L   K+IHA A++  L    +   TL+ +YS+    A      YA 
Sbjct: 215 SLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVA------YAG 268

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF ++ N +  +W T+I A A++ +   +A+ L +++  +G +  D       L AC+ 
Sbjct: 269 LVFDKMINKDLISWTTVIAAYAQN-NCHTEALKLLRKVQTKG-MDVDTMMIGSTLLACSG 326

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L   S  K+ H +  KRGL SD+ + N +I  YA CG+++ A ++F+++  + +VSW  M
Sbjct: 327 LRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSM 385

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  +V  G  + AL +F  M +   EPD  T  SI SA A L+ L+ G   H +I R   
Sbjct: 386 ISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRK-- 443

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
              + +    NSL+DMY  CGSL+ A +VF     + L  W ++I  + +HGR +AA++ 
Sbjct: 444 -GFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVEL 502

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  ++ ++   P+ ITF+ +L AC+H G+++EG+   + M  +Y + P  EHY CLVDLL
Sbjct: 503 FS-IMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLL 561

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
            RA +++EA H V +M ++P A +W + L AC + H++  L E  A+++++ +     G 
Sbjct: 562 GRANHLEEAYHFVKSMQIEPTAEVWCAFLGAC-RIHSNKKLGEIAAQKLLDLDPD-SPGS 619

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVL+S V+A++ RW DV  VR  M   G+ K PGCS IE+    H F   D SHP++ +I
Sbjct: 620 YVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKI 679

Query: 507 YGFLDLIDEKL-KSRGYTPDYSQAAMVDELDDGKQSSLRL---HSERLAIALGILNLKPG 562
           Y  L  I EKL K  GY P   Q  +V   + GK+  +++   HSERLAIA G+++   G
Sbjct: 680 YQKLAQITEKLEKEGGYVP---QTKLVLH-NVGKEEKVQMLYGHSERLAIAYGLMSTSEG 735

Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            PIR+ KNLRVC DCH   KL+S+ F  E+IVRD +RFHHF+DG CSC D+W
Sbjct: 736 TPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 206/408 (50%), Gaps = 25/408 (6%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIY---S 72
            +F   +  G   N  +L+++L  C+  S  K   +IHA  L++     ++ L +Y   +
Sbjct: 98  GLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKS-----NQVLDVYVANA 152

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            +     F  + YA R+F +++  ++ TWN++I    ++     +A+  F  + +  N+ 
Sbjct: 153 LVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQN-GLYNEALQFFCGL-QDANLK 210

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD+ +    L A   L     GK+ HA+  K  L S++ I N+LI  Y+ C  +  A  V
Sbjct: 211 PDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLV 270

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           FD M+ + L+SW  +I A+ Q      ALKL R++Q    + D     S   AC+GL  L
Sbjct: 271 FDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCL 330

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
           S     H Y L+      ++D+++ N +ID+Y  CG+++ A ++FES+  +D+ SW S+I
Sbjct: 331 SHAKEVHGYTLKRG----LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI 386

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
             +  +G A  AL  F  L+ E S  P+SIT V +LSA      +++G++    +  +  
Sbjct: 387 SCYVHNGLANEALGVF-YLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRK-- 443

Query: 372 ITPVLE--HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              +LE      LVD+ A  G+++ A  +      K   V+W ++++A
Sbjct: 444 -GFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKS-LVLWTTMINA 489



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 148/286 (51%), Gaps = 8/286 (2%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  TFP  LKAC  +    +G + H  I K G  S V++ NSL+  YA C  +  A K+F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 194 DNMLERS-LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
           D M ER+ +VSWN +I A+   G+   AL LFR MQ      + YT  +   AC   +  
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
            LGM  HA IL+    + V DV V N+L+ M+ + G +  A ++F+ + ++D  +WNS+I
Sbjct: 129 KLGMEIHAAILK---SNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMI 185

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            GF  +G    AL++F  L  + +  P+ ++ + +L+A    G +  G++     +  + 
Sbjct: 186 AGFTQNGLYNEALQFFCGL-QDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW- 243

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +   L     L+D+ ++   +  A  LV +  +  D + W +++ A
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYA-GLVFDKMINKDLISWTTVIAA 288


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 332/588 (56%), Gaps = 17/588 (2%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  ++L+ L  C   S+L   + +H  +LR +   Q+K L+  + I  +A    L +A  
Sbjct: 415 NEVTILNLLPACLEESELLSLRALHGYSLRHSF--QYKELINNAFIAAYAKCGSLVFAEH 472

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF+ +   +  +WN +I   A++ D   +A+  +  M   G +LPD  +    L AC  L
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDP-IKALDFYFEMTRLG-ILPDDFSIVSLLLACGRL 530

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GK+ H  + + GL  + ++  SL+  Y  C         F+ M +++ V WN M+
Sbjct: 531 GLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAML 590

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             + Q    + AL LFR+M     EPD     SI  AC+ L+ L LG   H + L++   
Sbjct: 591 SGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN--- 647

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           SL+ D  V  SL+DMY K G L  ++++F  +  +++ SWN +I GF +HG+   A++ F
Sbjct: 648 SLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELF 707

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + +   +   P+  TF+GVL AC H G+VSEG +Y   M   Y + P LEHY C++D+L 
Sbjct: 708 EDMKRSDK-QPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG 766

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447
           RAG ++EAL+ ++ MP +PDA IW SLL +    +  + + E+ A++++  E       Y
Sbjct: 767 RAGRLNEALNFINEMPEEPDAKIWSSLLSSSIT-YVDLEMGEKFAEKLLALEANKADS-Y 824

Query: 448 VLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIY 507
           +LLS +YA+A +W+ V +VR+ M D  + K+ GCS IE+ G  + F AG+ S+P + +I 
Sbjct: 825 ILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIR 884

Query: 508 GFLDLIDEKLKSRGYTPDYSQAAMVDELDD-GKQSSLRLHSERLAIALGILNLKPGMPIR 566
              + +++++   GYTPD S   ++ EL++  K+  L+ HSE++AI  G LN K G  +R
Sbjct: 885 KMWNRLEKQIVEIGYTPDCS--CVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLR 942

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + KNLR+C+DCH   K IS+    EI++RD  RFHHFK G CSC DYW
Sbjct: 943 ISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 14/269 (5%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF ++ N N F WN L+    R+ +   +AI  F  +I      PD  TFP  +KAC   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRN-ELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGK 223

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                GK  H    K GL+ D+++ N++I  Y  CG LD A ++FD M E++L+SWN +I
Sbjct: 224 CDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLI 283

Query: 209 DAFVQFGEFDSALKLFRRMQILFE------PDGYTFQSITSACAGLATLSLGMWAHAYIL 262
             F + G +  A + FR    L E      PD  T  ++   C+G   + +GM  H   +
Sbjct: 284 RGFSENGFWLEAYRAFRS---LLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV 340

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
           +     LV +++V N+LIDMY KCG L  A  +F  +  + + SWNS+I  ++  G    
Sbjct: 341 K---LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFE 397

Query: 323 ALKYFDRLVVEESF-SPNSITFVGVLSAC 350
                 ++ +EE     N +T + +L AC
Sbjct: 398 TFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 151/317 (47%), Gaps = 13/317 (4%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           K +H  A++  L      L + + +I  +     LD A  +F ++   N  +WN+LIR  
Sbjct: 230 KSVHGMAVKMGLIMD---LFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGF 286

Query: 109 ARSVDAKPQAIVLFQRMIEQGN-VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
           + +     +A   F+ ++E G+ ++PD  T    L  C+       G   H    K GLV
Sbjct: 287 SEN-GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLV 345

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            ++ + N+LI  Y+ CG L  A  +F  +  +S+VSWN MI A+ + G       L R+M
Sbjct: 346 HELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKM 405

Query: 228 QI---LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            +   L E +  T  ++  AC   + L      H Y LR   HS     L+NN+ I  Y 
Sbjct: 406 WMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLR---HSFQYKELINNAFIAAYA 462

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           KCGSL  A  VF  M  + ++SWN++I G A +G    AL ++  +       P+  + V
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEM-TRLGILPDDFSIV 521

Query: 345 GVLSACNHRGMVSEGRD 361
            +L AC   G++  G++
Sbjct: 522 SLLLACGRLGLLQYGKE 538



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            D  +N  LI  Y+ CG+   +  VFD +L ++L  WN ++  +V+   +D A+  F  +
Sbjct: 141 GDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 228 QIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
             +  F+PD +TF  +  AC G   + LG   H   ++     L+ D+ V N++I +Y K
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVK---MGLIMDLFVGNAMIALYGK 257

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFV 344
           CG LD A ++F+ MP+++L SWNS+I GF+ +G    A + F  L+   +   P+  T V
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +L  C+  G V  G     + + +  +   L     L+D+ ++ G + EA  L   +  
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAV-KLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIEN 376

Query: 405 KPDAVIWRSLLDA 417
           K   V W S++ A
Sbjct: 377 K-SVVSWNSMIGA 388



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 7/311 (2%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
           IH  A++  L   H+ ++  + I  ++    L  A  +F +IEN +  +WN++I A +R 
Sbjct: 335 IHGMAVKLGLV--HELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSRE 392

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
                   +L +  +E+  +  ++ T    L AC         +  H +  +        
Sbjct: 393 GFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKEL 452

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL- 230
           INN+ I  YA CG L  A  VF  M  +S+ SWN +I    Q G+   AL  +  M  L 
Sbjct: 453 INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLG 512

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
             PD ++  S+  AC  L  L  G   H ++LR   + L  +  V  SL+ +Y  C    
Sbjct: 513 ILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR---NGLEMNSFVAVSLLSLYFHCSKPF 569

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
             R  FE M  ++   WN+++ G++ +     AL  F R ++ +   P+ I    +L AC
Sbjct: 570 YGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLF-RQMLSDGLEPDEIAIASILGAC 628

Query: 351 NHRGMVSEGRD 361
           +    +  G++
Sbjct: 629 SQLSALGLGKE 639



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 13/266 (4%)

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           I    + G+ + AL   +R        GY       A  G+     G + +  I R  D 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWK--NNAGYDLAQRKEA-MGMLLQKCGQYKNVEIGRKLDE 131

Query: 268 SLVT------DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
            L        D ++N  LI MY  CG    +R VF+ +  ++L  WN+++ G+  +   +
Sbjct: 132 MLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYD 191

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F  L+    F P++ TF  ++ AC  +  +  G+    + +    I  +      
Sbjct: 192 EAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVG-NA 250

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
           ++ L  + G +DEA+ L   MP + + + W SL+     ++   + +    + ++ES  G
Sbjct: 251 MIALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRG-FSENGFWLEAYRAFRSLLESGDG 308

Query: 442 ICSGVYVLLSRVYASARRWN-DVGLV 466
           +   V  +++ +   +   N DVG+V
Sbjct: 309 LIPDVATMVTLLPVCSGEGNVDVGMV 334


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 212/535 (39%), Positives = 304/535 (56%), Gaps = 20/535 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A  +F ++   +  TW T++    ++ +    A  +F       +V+P+K    +  
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQN-NRVDDARKIF-------DVMPEKTEVSWTS 239

Query: 143 KACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
               Y+     G+   A  +F+   V  V   N++I      G +  A +VFD+M ER+ 
Sbjct: 240 MLMGYV---QNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERND 296

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
            SW  +I    + G    AL LF  MQ     P   T  SI S CA LA+L  G   HA 
Sbjct: 297 ASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQ 356

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           ++R C   +  DV V + L+ MY KCG L  ++ +F+  P +D+  WNSII G+A HG  
Sbjct: 357 LVR-CQFDV--DVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLG 413

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           E ALK F  + +  S  PN +TFV  LSAC++ GMV EG   ++ M + + + P+  HY 
Sbjct: 414 EEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYA 473

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VD+L RAG  +EA+ ++ +M ++PDA +W SLL A C+ H+ + ++E  AK++IE E 
Sbjct: 474 CMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA-CRTHSQLDVAEFCAKKLIEIEP 532

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGD-TS 499
              SG Y+LLS +YAS  RW DV  +RKLM  + V K PGCS  E++   H F  G   S
Sbjct: 533 E-NSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINS 591

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
           HP+ + I   LD +D  L+  GY PD S  A+ D  ++ K +SL+ HSERLA+A  +L L
Sbjct: 592 HPEQESILKILDELDGLLREAGYNPDCSY-ALHDVDEEEKVNSLKYHSERLAVAYALLKL 650

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G+PIRV KNLRVC DCH   K+IS++   EII+RD  RFHHF++G CSC DYW
Sbjct: 651 SEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 27/245 (11%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           N L+  Y   G +D A KVFD M ER++VSW  ++  +V  G+ D A  LF +M    E 
Sbjct: 83  NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP---EK 139

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCD-HSLVTDV--LVNNSLIDMYCKCGSLD 290
           +  ++            + +G      I   C  + ++ D   +   S+I   CK G +D
Sbjct: 140 NKVSW----------TVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVD 189

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            AR++F+ M +R + +W +++ G+  + R + A K FD  V+ E      +++  +L   
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFD--VMPEK---TEVSWTSMLMGY 244

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
              G + +  + F+VM     + PV+     ++  L + G I +A  +  +M  + DA  
Sbjct: 245 VQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVFDSMKERNDAS- 298

Query: 411 WRSLL 415
           W++++
Sbjct: 299 WQTVI 303



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 29/296 (9%)

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
           RI H +    +  A ++F   ++ +  +WN+++     ++  +  A  LF  M       
Sbjct: 23  RITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPR-DARKLFDEM------- 74

Query: 133 PDKHTFPFALKACAYL--FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           PD++   +      Y+      + ++    + +R +VS      +L+  Y   G +D+A 
Sbjct: 75  PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVS----WTALVKGYVHNGKVDVAE 130

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
            +F  M E++ VSW VM+  F+Q G  D A KL+  +     PD       TS   GL  
Sbjct: 131 SLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMI-----PDKDNIAR-TSMIHGLCK 184

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
                 A        + S++T      +++  Y +   +D AR++F+ MP++   SW S+
Sbjct: 185 EGRVDEAREIFDEMSERSVIT----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSM 240

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           ++G+  +GR E A + F+ + V+   + N++     +S    +G +++ R  FD M
Sbjct: 241 LMGYVQNGRIEDAEELFEVMPVKPVIACNAM-----ISGLGQKGEIAKARRVFDSM 291



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 75/269 (27%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           N  I   +  G +  A K+FD+   +S+ SWN M+  +        A KLF  M     P
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM-----P 75

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           D                                     +++  N L+  Y K G +D AR
Sbjct: 76  D------------------------------------RNIISWNGLVSGYMKNGEIDEAR 99

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS----- 348
           +VF+ MP+R++ SW +++ G+  +G+ + A   F ++  +   S  ++  +G L      
Sbjct: 100 KVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSW-TVMLIGFLQDGRID 158

Query: 349 -ACN---------------------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
            AC                        G V E R+ FD M     IT     +  +V   
Sbjct: 159 DACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT-----WTTMVTGY 213

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +   +D+A  +   MP K + V W S+L
Sbjct: 214 GQNNRVDDARKIFDVMPEKTE-VSWTSML 241



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 136/335 (40%), Gaps = 60/335 (17%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           + +G      +L+S L+ C S++ L   KQ+HAQ +R    Q    + + S ++  +   
Sbjct: 323 QKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRC---QFDVDVYVASVLMTMYIKC 379

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            +L  +  +F +  + +   WN++I   A S     +A+ +F  M   G+  P++ TF  
Sbjct: 380 GELVKSKLIFDRFPSKDIIMWNSIISGYA-SHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC+Y     +G + +  +        V+    +   YA                   
Sbjct: 439 TLSACSYAGMVEEGLKIYESM------ESVFGVKPITAHYA------------------- 473

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
                 M+D   + G F+ A+++   M +  EPD   + S+  AC   + L +  +    
Sbjct: 474 -----CMVDMLGRAGRFNEAMEMIDSMTV--EPDAAVWGSLLGACRTHSQLDVAEFCAKK 526

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSL-DIA--RQVFES--MPKRDLTSWNSI----- 310
           ++     +  T +L++N    MY   G   D+A  R++ ++  + K    SW  +     
Sbjct: 527 LIEIEPENSGTYILLSN----MYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVH 582

Query: 311 ---ILGFALHGRAEAALKYFDR---LVVEESFSPN 339
                G   H   E+ LK  D    L+ E  ++P+
Sbjct: 583 AFTRGGINSHPEQESILKILDELDGLLREAGYNPD 617


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 224/601 (37%), Positives = 339/601 (56%), Gaps = 21/601 (3%)

Query: 21  FNNNRNEGSFNNHSSLLSSLTE--CKSMSQL-KQIHAQALRTAL---PQQHKTLLIYSRI 74
           F+  R  G+  N   L S L    C S + L K IH  A++T     P     LL     
Sbjct: 239 FSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDM--- 295

Query: 75  IHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
             +A    ++ A  VF  I + +   W+ LI   A+S   + QA  +F RM+ + +V+P+
Sbjct: 296 --YAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNE-QAFEMFLRMM-RSSVVPN 351

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + +    L+ACA +     G+Q H  + K G  S++++ N+L+  YA C +++ + ++F 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253
           ++ + + VSWN +I  + Q G  + AL +F+ M+         TF S+  ACA  A++  
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILG 313
            +  H+ I +    +   D +V NSLID Y KCG +  A +VFES+ + D+ SWN+II G
Sbjct: 472 TVQIHSLIEKS---TFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISG 528

Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373
           +ALHGRA  AL+ F+R+   ++  PN +TFV +LS C   G+V++G   F+ M  ++ I 
Sbjct: 529 YALHGRATDALELFNRMNKSDT-KPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIK 587

Query: 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433
           P ++HY C+V LL RAG +++AL  + ++P  P  ++WR+LL +C   H +V L +  A+
Sbjct: 588 PSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVV-HKNVALGKFSAE 646

Query: 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEF 493
           +V+E E       YVLLS +YA+A   + V L+RK M + GV KE G S +EI G  H F
Sbjct: 647 KVLEIEPQD-ETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAF 705

Query: 494 FAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIA 553
             G   HP  + I   L+ ++ K    GY PD +   + D  ++ K   L +HSERLA+A
Sbjct: 706 SVGSADHPDMRIINAMLEWLNLKASREGYVPDIN-VVLHDVDEEEKARMLWVHSERLALA 764

Query: 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
            G+    PG PIR+ KNLR C DCH V K+IS+I   EI+VRD  RFHHF +G CSC DY
Sbjct: 765 YGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDY 824

Query: 614 W 614
           W
Sbjct: 825 W 825



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 11/266 (4%)

Query: 154 GKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           G+  HA + +RG V+  D +  N L++ YA  G L  A ++FD M ER++VS+  ++  +
Sbjct: 66  GRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGY 125

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              G F+ A  LFRR+Q    E + +   +I      +    L    HA     C     
Sbjct: 126 ALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACA---CKLGHD 182

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V +SLID Y  CG++  AR VF+ +  +D  +W +++  ++ +   E AL  F ++
Sbjct: 183 RNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKM 242

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY-GCLVDLLARA 389
            +  +  PN      VL A         G+      +     T    H  G L+D+ A+ 
Sbjct: 243 RMAGA-KPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTE--PHVGGALLDMYAKC 299

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLL 415
           G I++A  +   +P   D ++W  L+
Sbjct: 300 GYIEDARTVFEIIP-HDDVILWSFLI 324


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 209/542 (38%), Positives = 308/542 (56%), Gaps = 18/542 (3%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A   +L  A R+F +    + FTW  ++    ++       ++   R +  G  +P
Sbjct: 161 ISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQN------GMLDEARRVFDG--MP 212

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           +K++  +      Y+    +  QA   +F+     +V   N++I  YA  G +  A   F
Sbjct: 213 EKNSVSWNAIIAGYV-QCKRMDQAR-ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 270

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLS 252
           D M +R  +SW  +I  + Q G  + AL LF  M+   E  +  TF S  S CA +A L 
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG   H  +++     L +   V N+L+ MYCKCG++D A  VFE + ++++ SWN++I 
Sbjct: 331 LGKQVHGRVVKA---GLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 387

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A HG  + AL  F+ +  +    P+ +T VGVLSAC+H G+V +G +YF  M  +Y I
Sbjct: 388 GYARHGFGKEALMLFESMK-KTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 446

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           T   +HY C++DLL RAG +D+A +L+ NMP +PDA  W +LL A  + H +  L E+ A
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS-RIHGNTELGEKAA 505

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           K + E E    SG+YVLLS +YA++ RW DVG +R  M D+GV K PG S +E+    H 
Sbjct: 506 KMIFEMEPD-NSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHT 564

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F  GD+ HP+  +IY FL+ +D K+K  GY    ++  + D  ++ K   L+ HSE+LA+
Sbjct: 565 FTVGDSVHPERDRIYTFLEELDLKMKKEGYVSS-TKLVLHDVEEEEKVHMLKYHSEKLAV 623

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GIL +  G PIRV KNLRVC+DCH   K IS+I    II+RD  RFHHF  G CSC D
Sbjct: 624 AFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGD 683

Query: 613 YW 614
           YW
Sbjct: 684 YW 685



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 61/316 (19%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           DV   N+++  YA  G++  A ++FD M  ++ +SWN M+ A+VQ G  + A +LF    
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF---- 115

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH--------CDHSLVTDVLVNNSLI 280
                          + A    +S       Y+ R+         D     D +  N++I
Sbjct: 116 --------------ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 161

Query: 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340
             Y + G L  A+++FE  P RD+ +W +++ G+  +G  + A + FD +  + S S N+
Sbjct: 162 SGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNA 221

Query: 341 I--------------------------TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           I                          ++  +++     G +++ R++FD M    +I+ 
Sbjct: 222 IIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS- 280

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD--ACCKKHASVVLSEEVA 432
               +  ++   A++G  +EALHL   M    + +   +     + C + A++ L ++V 
Sbjct: 281 ----WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVH 336

Query: 433 KQVIESEGGICSGVYV 448
            +V+++  G+ SG YV
Sbjct: 337 GRVVKA--GLESGCYV 350



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 139/346 (40%), Gaps = 37/346 (10%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    +  A  +F ++   NS +WN ++            A V   R+ +   +   K 
Sbjct: 71  YAQNGYVKEAKEIFDEMPCKNSISWNGML-----------AAYVQNGRIEDARRLFESKA 119

Query: 137 TFPFALKACAYLFAFSQGKQAHAH-IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            +      C       + +   A  IF R    D    N++I  YA  G L  A ++F+ 
Sbjct: 120 DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE 179

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM 255
              R + +W  M+  +VQ G  D A ++F  M    E +  ++ +I +       +    
Sbjct: 180 SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP---EKNSVSWNAIIAGYVQCKRMDQA- 235

Query: 256 WAHAYILRHCDHSL-VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
                  R    ++   +V   N++I  Y + G +  AR  F+ MP+RD  SW +II G+
Sbjct: 236 -------RELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGY 288

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A  G  E AL  F  +   +    N  TF   LS C     +  G+      ++   +  
Sbjct: 289 AQSGYGEEALHLFVEM-KRDGERLNRSTFTSTLSTCAEIAALELGKQ-----VHGRVVKA 342

Query: 375 VLEHYGCLVD-----LLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            LE  GC V      +  + GNID+A  +   +  K + V W +++
Sbjct: 343 GLES-GCYVGNALLVMYCKCGNIDDAYIVFEGIEEK-EVVSWNTMI 386



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   + +G   N S+  S+L+ C  ++ L   KQ+H + ++  L  +    +  + ++ 
Sbjct: 300 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL--ESGCYVGNALLVM 357

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    ++D A+ VF  IE     +WNT+I   AR    K +A++LF+ M + G +LPD  
Sbjct: 358 YCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK-EALMLFESMKKTG-ILPDDV 415

Query: 137 TFPFALKACAYLFAFSQGKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
           T    L AC++     +G +  ++     G+ ++      +I      G LD A  +  N
Sbjct: 416 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 475

Query: 196 M-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234
           M  E    +W  ++ A    G  +   K   +M    EPD
Sbjct: 476 MPFEPDAATWGALLGASRIHGNTELGEKA-AKMIFEMEPD 514



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 11/130 (8%)

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           +L  AR +F+ MP+RD+ SWN+++ G+A +G  + A + FD +  +     NSI++ G+L
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGML 99

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           +A    G + + R  F+   +   I+     + C++    +   + +A  +   MP + D
Sbjct: 100 AAYVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMPER-D 153

Query: 408 AVIWRSLLDA 417
            V W +++  
Sbjct: 154 EVSWNTMISG 163


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 336/602 (55%), Gaps = 18/602 (2%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIY---SRII 75
           S+FN  R  G + N  +  S L+   S + +  +H Q L + + +      I+   + + 
Sbjct: 231 SLFNQMRCSGPYPNQFTFSSILS--ASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVD 288

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A  AD+  A RVF Q+   N  +WN++I     + +   +A+ +F+ ++ +  V+P++
Sbjct: 289 MYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHN-NLYDRAVGVFKDVLREKTVIPNE 347

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            +    L ACA +   + G+Q H  + K GLV   Y+ NSL+  Y  C   D   K+F  
Sbjct: 348 VSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQC 407

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLF---RRMQILFEPDGYTFQSITSACAGLATLS 252
           + +R +V+WNV++  FVQ  +F+ A   F   RR  IL  PD  +F ++  + A LA L 
Sbjct: 408 VGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGIL--PDEASFSTVLHSSASLAALH 465

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H  I++      V ++ +  SLI MY KCGSL  A QVFE +   ++ SW ++I 
Sbjct: 466 QGTAIHDQIIKL---GYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMIS 522

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
            + LHG A   ++ F+ ++  E   P+ +TFV VLSAC+H G V EG  +F+ M   +++
Sbjct: 523 AYQLHGCANQVIELFEHML-SEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDM 581

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
            P  EHY C+VDLL RAG +DEA   + +MPMKP   +W +LL AC +K+ ++ +  E A
Sbjct: 582 NPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGAC-RKYGNLKMGREAA 640

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           +++ E E     G YVLL+ +   + R  +   VR+LM   GV KEPGCS I++  +   
Sbjct: 641 ERLFEMEP-YNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFV 699

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F A D SH  + +IY  L+ +++ +K +GY  +        E ++ +Q  L  HSE+LA+
Sbjct: 700 FTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQG-LWYHSEKLAL 758

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A G+L L    PIR+ KNLR C  CH V KL S+IF+ EIIVRD  RFH F DG CSC D
Sbjct: 759 AFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGD 818

Query: 613 YW 614
           YW
Sbjct: 819 YW 820



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 135/269 (50%), Gaps = 8/269 (2%)

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVM 207
           +     Q H  I      S  ++ N+LI+ YA CG L+ A  +F       +++V+W  +
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSL 216

Query: 208 IDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I     F     AL LF +M+     P+ +TF SI SA A    +  G   H+ I +   
Sbjct: 217 ITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHK--- 273

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
           H    ++ V  +L+DMY KC  +  A +VF+ MP+R+L SWNS+I+GF  +   + A+  
Sbjct: 274 HGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGV 333

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  ++ E++  PN ++   VLSAC + G ++ GR    V++ +Y + P+      L+D+ 
Sbjct: 334 FKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVV-KYGLVPLTYVMNSLMDMY 392

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +    DE + L   +  + D V W  L+
Sbjct: 393 FKCRFFDEGVKLFQCVGDR-DVVTWNVLV 420


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/531 (37%), Positives = 298/531 (56%), Gaps = 20/531 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A   F ++   +  +WNTLI   A++           Q+  +  +V+P+K+   ++    
Sbjct: 155 ALAFFNKMPVKDIASWNTLISGFAQNGQ--------MQKAFDLFSVMPEKNGVSWSAMIS 206

Query: 146 AYLFAFSQGK-QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
            Y+     G  +A   ++K   +  V +  +++  Y   G ++LA ++F  M  ++LV+W
Sbjct: 207 GYV---EHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTW 263

Query: 205 NVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N MI  +V+    +  LK+F+ M +    P+  +  S+   C+ L+ L LG   H  + +
Sbjct: 264 NSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSK 323

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                L  D     SLI MYCKCG LD A ++F  MP++D+ +WN++I G+A HG    A
Sbjct: 324 S---PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKA 380

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L  FD++    +  P+ ITFV V+ ACNH G V  G  YF  M  E+ I     HY C++
Sbjct: 381 LHLFDKMR-NGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVI 439

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DLL RAG +DEA+ L+  MP  P A I+ +LL AC + H ++ L+E  A+ ++  +    
Sbjct: 440 DLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGAC-RIHKNLDLAEFAARNLLNLDPTSA 498

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +G YV L+ +YA+  +W+ V  VRK+M +  V K PG S IEI  + HEF + D  HP+ 
Sbjct: 499 TG-YVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPEL 557

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
             I+  L+ +D K+K  GY PD  + A+ D  ++ K+  L  HSE+LAIA G++   PG 
Sbjct: 558 TSIHKKLNELDGKMKLAGYVPDL-EFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGT 616

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRVFKNLRVC DCH   K IS I   EIIVRD  RFHHF++G CSC DYW
Sbjct: 617 PIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF-GEFDSALKLFRRMQ 228
           V +N ++  F  +C  L+ A  VF+ M  R+ V+WN M+  + +  G+   A +LF ++ 
Sbjct: 74  VSLNKTIASFVRACD-LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP 132

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              EPD  ++ +I   C       L  +     L   +   V D+   N+LI  + + G 
Sbjct: 133 ---EPDSVSY-NIMLVC------YLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           +  A  +F  MP+++  SW+++I G+  HG  EAA + +  +
Sbjct: 183 MQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV 224



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA-LHGRAEAALKYFDR 329
           +DV+  N  I  + +   L+ AR VFE M  R   +WN+++ G+  + G+ + A + FD+
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLA 387
           +       P+S+++  ++  C  R    +    F      +N  PV  +  +  L+   A
Sbjct: 131 IP-----EPDSVSY-NIMLVCYLRSYGVKAALAF------FNKMPVKDIASWNTLISGFA 178

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           + G + +A  L S MP K + V W +++     +H  +  +EE+ K V
Sbjct: 179 QNGQMQKAFDLFSVMPEK-NGVSWSAMISGYV-EHGDLEAAEELYKNV 224



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 277 NSLIDMYCK-CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
           N+++  Y K  G +  A ++F+ +P+ D  S+N +++ +      +AAL +F+++ V++ 
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDI 167

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
            S N++     +S     G + +  D F VM  +  ++     +  ++      G+++ A
Sbjct: 168 ASWNTL-----ISGFAQNGQMQKAFDLFSVMPEKNGVS-----WSAMISGYVEHGDLEAA 217

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
             L  N+ MK  +V+  + +     K   V L+E + +++
Sbjct: 218 EELYKNVGMK--SVVVETAMLTGYMKFGKVELAERIFQRM 255


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 340/585 (58%), Gaps = 21/585 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTAL--PQQHKTLLI--YSRIIHFASFADLDYAFRVFY 91
           +LS   +   + + KQ H   L++ L   Q  K  LI  YSR  H      +D A ++  
Sbjct: 134 VLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFH------VDSAMQILD 187

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
            +   + F++N+++ A   S   + +A  + +RM+++  V+ D  T+   L  CA +   
Sbjct: 188 TVPGDDVFSYNSILSALVES-GCRGEAAQVLKRMVDEC-VIWDSVTYVSVLGLCAQIRDL 245

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
             G Q HA + K GLV DV+++++LI  Y  CG +  A K FD + +R++V+W  ++ A+
Sbjct: 246 QLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAY 305

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
           +Q G F+  L LF +M++    P+ +TF  + +ACA L  L+ G   H  I+        
Sbjct: 306 LQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMS---GFK 362

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
             ++V N+LI+MY K G++D +  VF +M  RD+ +WN++I G++ HG  + AL  F  +
Sbjct: 363 NHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDM 422

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           +      PN +TF+GVLSAC H  +V EG  YFD ++ ++++ P LEHY C+V LL RAG
Sbjct: 423 M-SAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAG 481

Query: 391 NIDEALHLV-SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
            +DEA + + +   +K D V WR+LL+AC   H +  L +++ + VI+ +     G Y L
Sbjct: 482 LLDEAENFMKTTTQVKWDVVAWRTLLNAC-HIHRNYNLGKQITETVIQMDPHDV-GTYTL 539

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS ++A AR+W+ V  +RKLM ++ + KEPG S ++I    H F +  ++HP++ QI+  
Sbjct: 540 LSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEK 599

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           +  +   +K  GY PD     + D  D+ K+  L  HSE+LA+A G++ + P  PIR+ K
Sbjct: 600 VQQLLAMIKPLGYAPDVG-VVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIK 658

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLR+C DCH   KLIS+  N  IIVRD  RFHHF++G C+C D+W
Sbjct: 659 NLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 197/388 (50%), Gaps = 19/388 (4%)

Query: 35  SLLSSLTECKSMSQLKQIHAQ-ALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +LL      KS+   K IHAQ  +R    +      I S I  ++       A ++F ++
Sbjct: 28  NLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRM 87

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              N  +W+ L+       +   + + LF+ ++   +  P+++ F   L  CA      +
Sbjct: 88  LQRNVVSWSALMMGYLHKGEV-LEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKE 146

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           GKQ H ++ K GL+   Y+ N+LIH Y+ C H+D A ++ D +    + S+N ++ A V+
Sbjct: 147 GKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVE 206

Query: 214 FGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            G    A ++ +RM    +++  D  T+ S+   CA +  L LG+  HA +L+     LV
Sbjct: 207 SGCRGEAAQVLKRMVDECVIW--DSVTYVSVLGLCAQIRDLQLGLQIHAQLLK---TGLV 261

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            DV V+++LID Y KCG +  AR+ F+ +  R++ +W +++  +  +G  E  L  F ++
Sbjct: 262 FDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKM 321

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY---GCLVDLLA 387
            +E++  PN  TF  +L+AC     ++ G    D++     ++    H      L+++ +
Sbjct: 322 ELEDT-RPNEFTFAVLLNACASLVALAYG----DLLHGRIVMSGFKNHLIVGNALINMYS 376

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++GNID + ++ SNM M  D + W +++
Sbjct: 377 KSGNIDSSYNVFSNM-MNRDVITWNAMI 403


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/490 (42%), Positives = 281/490 (57%), Gaps = 21/490 (4%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  +  FALKA A         Q HA +F+ G+ +DV +  +L+  YA CG +  A KVF
Sbjct: 153 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVF 212

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKL-------FRRMQILFEPDGYTFQSITSACA 246
           D M  R + +WN ++    Q  E + AL L       FR +    EP+  T  +  SACA
Sbjct: 213 DEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACA 272

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES--MPKRDL 304
            L TL  G+  H +         V +V V N+LIDMY KCGSL  A +VF S  +  R L
Sbjct: 273 QLGTLKDGLAVHEFAR---TIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTL 329

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            S+N+ I   ++HG  E ALK FD +       P+ IT++ V+  CNH G+V +GR  FD
Sbjct: 330 VSYNATIQALSIHGHGEDALKLFDEMPAR--IEPDEITYLAVMGGCNHAGLVDDGRRVFD 387

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M     + P ++HYG +VDLL RAG + EA  ++ +MP   D V+W++LL A  K H +
Sbjct: 388 SM----RVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAA-KMHGN 442

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V L+E  A ++ +  G    G YVLLS VYAS  RW DVG VR  M    V K PG S  
Sbjct: 443 VDLAELAATKLADL-GSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYT 501

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           EIDG+ H+F  GD  H + ++IY  LD I  ++ + GY P+ S   + D  ++ KQ +L 
Sbjct: 502 EIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNV-LHDIGEEEKQYALS 560

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAIA G+++  PG  IRV KNLR C DCH V KLIS+ +N  II+RDRARFH F+
Sbjct: 561 YHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFE 620

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 621 DGHCSCRDYW 630


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/459 (41%), Positives = 276/459 (60%), Gaps = 12/459 (2%)

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           GL  D Y+ N ++         +    +F  + + ++  WN MI   V    FD A++ +
Sbjct: 41  GLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFY 100

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH------SLVTDVLVNN 277
             M+   F P+ +TF  +  ACA L  L LG+  H  +++   H       +V +V V  
Sbjct: 101 GLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGT 160

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           SL+DMY KCG+++ AR VF+ MP++D+ SW ++I G+AL+G  + A+  F ++  E    
Sbjct: 161 SLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLG 220

Query: 338 --PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+  TF+G+L  C H G+V EGR YF+ M   +++TP +EHYGC+VDLL RAG +DEA
Sbjct: 221 IKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEA 280

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             L+ NMPM+ +A++W +LL A C+ H    L+E   KQ+IE E    SG YVLLS +Y+
Sbjct: 281 HQLIRNMPMEANAIVWGALLGA-CRIHRDTQLAELALKQLIELEPW-NSGNYVLLSNIYS 338

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           +  +W++   VR  M +K + K PGCS IE+DGI HEF  GD  HP +++IY  LD + +
Sbjct: 339 ANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTK 398

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           K+K  GY P  +   + D  ++ K+  L  HSE+LAIA G+++  P   IRV KNLRVC 
Sbjct: 399 KMKVAGYVPT-TDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCG 457

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH   KLIS I   EI VRD  RFH F++GSCSC DYW
Sbjct: 458 DCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 19/285 (6%)

Query: 80  FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
           F+D +Y   +F+QI+ PN F WNT+IR    S D    AI  +  M  +G  LP+  TFP
Sbjct: 59  FSDTNYTRFLFHQIKQPNIFLWNTMIRGLV-SNDCFDDAIEFYGLMRSEG-FLPNNFTFP 116

Query: 140 FALKACAYLFAFSQGKQAHAHIFKR---------GLVSDVYINNSLIHFYASCGHLDLAN 190
           F LKACA L     G + H  + K          G+V +V++  SL+  YA CG+++ A 
Sbjct: 117 FVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKAR 176

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ----ILFEPDGYTFQSITSACA 246
            VFD M E+ +VSW  MI  +   G    A+ LF +MQ    +  +PDG TF  +   C 
Sbjct: 177 SVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCT 236

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLT 305
               +  G      + R    SL   +     ++D+  + G LD A Q+  +MP + +  
Sbjct: 237 HAGLVDEGRRYFNSMYRF--FSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI 294

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFVGVLSA 349
            W +++    +H   + A     +L+  E + S N +    + SA
Sbjct: 295 VWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSA 339


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 314/574 (54%), Gaps = 17/574 (2%)

Query: 46  MSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTL 104
           M + ++IH+   R +L   H+  +  + ++  +A    LD A  +F  I      +W+ +
Sbjct: 1   MEEGRRIHS---RLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAM 57

Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR 164
           I A A     + +A++LF RM   G V P+  TF     AC  +    QG++ HA     
Sbjct: 58  IGAYALHGRGQ-EALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMAS 116

Query: 165 GLV--SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           G +  S+  + N+L++ Y  CG L+ A KVFD M      SW  MI A  +  E   AL+
Sbjct: 117 GELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALE 176

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
           LF RM +    P   T  S+ +ACA    L +G   H+ +     HS    VL   +L+D
Sbjct: 177 LFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHS---SVLAQTALLD 233

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCGSL+ + +VF +M  R+  SW ++I   A HG+ + AL+ F  + +E     ++ 
Sbjct: 234 MYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLE-GMVADAT 292

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TF+ VL AC+H G++ E  ++F  M+ +Y I P   HY   +D + RAG + +A  L+ +
Sbjct: 293 TFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHS 352

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MP  P+ + W++LL+AC + H+    + +VA +++       S  Y LL  VYA+  R+ 
Sbjct: 353 MPFHPETLTWKTLLNAC-RIHSQAERATKVA-ELLSKLAPEDSMAYTLLGNVYAATGRYG 410

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
           D   VRK MTD+G+ K PG S IE+    HEF AGD +HP   +I   L+ +  +++  G
Sbjct: 411 DQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAG 470

Query: 522 YTPDYSQAA-MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEV 580
           Y P+       V+E  + K+  + LHSE+LAIA G++   PG P+ + KNLRVC DCH  
Sbjct: 471 YVPNTKDVLHAVNE--EEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAA 528

Query: 581 TKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           TK+I++I    I+VRD  RFHHF+DG CSC DYW
Sbjct: 529 TKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 166/349 (47%), Gaps = 28/349 (8%)

Query: 18  HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF 77
           H + N+ R E +    + + ++    + + Q ++IHA A+ +   +    +L  + +  +
Sbjct: 75  HRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMY 134

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
                L+ A +VF  +++P++F+W ++I AC  + +   +A+ LF RM  +G + P   T
Sbjct: 135 VRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCEL-LEALELFHRMNLEG-IPPTSVT 192

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
               L ACA   A   GKQ H+ +   G  S V    +L+  YA CG L+ ++KVF  M 
Sbjct: 193 LASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAME 252

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC--AGLATLSLG 254
            R+ VSW  MI A  Q G+ D AL+LF+ M +     D  TF  +  AC  AGL   SL 
Sbjct: 253 TRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLE 312

Query: 255 MWAHAYILRHCDHSLVTDVLVNNS------LIDMYCKCGSLDIARQVFESMPKRDLT-SW 307
            +          HS+V D  +  +       +D   + G L  A ++  SMP    T +W
Sbjct: 313 FF----------HSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTW 362

Query: 308 NSIILGFALHGRAEAALK---YFDRLVVEESFSPNSITFVGVLSACNHR 353
            +++    +H +AE A K      +L  E+S    + T +G + A   R
Sbjct: 363 KTLLNACRIHSQAERATKVAELLSKLAPEDSM---AYTLLGNVYAATGR 408


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 327/588 (55%), Gaps = 26/588 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQH----KTLLIYSRIIHFASFADLDYAFRV 89
           SS++S+ TE  S+   +Q+H+ ALR  L          + +Y+++    S   +++A +V
Sbjct: 250 SSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERS---MEHARKV 306

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  +   N  +W  LI    +S   +   + LF+ M+ + ++ P+  T+   LKACA L 
Sbjct: 307 FKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNE-SIRPNHITYSNLLKACANLS 365

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G+Q HAH+ K  +     + N+L+  YA  G ++ A K FD + E +++S +  ++
Sbjct: 366 DQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVE 425

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDG---YTFQSITSACAGLATLSLGMWAHAYILRHCD 266
                    S ++           DG   +TF S+ SA A +  L+ G   HA  ++   
Sbjct: 426 TERNNASCSSKIEGM--------DDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKA-- 475

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
               +D  ++NSL+ MY +CG L+ A + F+ M   ++ SW SII G A HG A+ AL  
Sbjct: 476 -GFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSM 534

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F  +++     PN +T++ VLSAC+H G+V EG+++F  M  ++ + P +EHY C+VDLL
Sbjct: 535 FHDMILA-GVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLL 593

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
           AR+G ++EA   ++ MP K DA++W++LL A C+ + +  + E  A  VI  E       
Sbjct: 594 ARSGLVEEARQFINEMPCKADALVWKTLLSA-CRTYGNTEIGEIAANHVINLEPRD-PAP 651

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVLLS +YA A  W++V  +R LM DK ++KE G S +++    HEF AGDTSHP    I
Sbjct: 652 YVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDI 711

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
           Y  L  +  ++K  GY PD S   + D  ++ K+  L  HSE++A+A G++      P+R
Sbjct: 712 YAKLVTLIREIKDIGYVPDTS-IVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMR 770

Query: 567 VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +FKNLRVC DCH   K IS+    EII+RD  RFH  KDG CSC +YW
Sbjct: 771 IFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 22/394 (5%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           + LL+S      +   + +H + LR+ +      ++  S +  ++    ++ A RVF Q+
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRSEILDT-DAVVANSLLTMYSKCGAVEAARRVFDQM 102

Query: 94  ENPNSF-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC--AYLFA 150
                  +W  +    AR  +   +  +     + +  + P+  T   A +AC    LF 
Sbjct: 103 CGVRDLVSWTAMASCLAR--NGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFR 160

Query: 151 FSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
            + G      + K G   +DV +  +LI  +A  G L  A +VFD ++ER+ V W ++I 
Sbjct: 161 LA-GGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLIT 219

Query: 210 AFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
            +VQ G     ++LF  M    FEPDGY+  S+ SAC  L ++ LG   H+  LR     
Sbjct: 220 RYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALR---LG 276

Query: 269 LVTDVLVNNSLIDMYCKCG---SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
           LV+D  V+  L+DMY K     S++ AR+VF++MP+ ++ SW ++I G+   G  E  + 
Sbjct: 277 LVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVM 336

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
              R ++ ES  PN IT+  +L AC +      GR      + + +I  V      LV +
Sbjct: 337 ALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQ-IHAHVLKTSIAHVNVVGNALVSM 395

Query: 386 LARAGNIDEA------LHLVSNMPMKPDAVIWRS 413
            A +G ++EA      L+  + + M PD    R+
Sbjct: 396 YAESGCMEEARKAFDQLYETNILSMSPDVETERN 429



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 148/327 (45%), Gaps = 31/327 (9%)

Query: 6   VQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALP 62
           VQ G    + +  ++F    NE    NH +  + L  C ++S     +QIHA  L+T++ 
Sbjct: 326 VQSG--VQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIA 383

Query: 63  QQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIR------ACARSVDAKP 116
             H  ++  + +  +A    ++ A + F Q+   N  + +  +       +C+  ++   
Sbjct: 384 --HVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMD 441

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
             +  F              TF   L A A +   ++G++ HA   K G  SD  I+NSL
Sbjct: 442 DGVSTF--------------TFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSL 487

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDG 235
           +  YA CG+L+ A + FD M + +++SW  +I    + G    AL +F  M +   +P+ 
Sbjct: 488 VSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPND 547

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
            T+ ++ SAC+ +  +  G      + +  DH L+  +     ++D+  + G ++ ARQ 
Sbjct: 548 VTYIAVLSACSHVGLVKEGKEHFRSMQK--DHGLLPRMEHYACIVDLLARSGLVEEARQF 605

Query: 296 FESMP-KRDLTSWNSIILGFALHGRAE 321
              MP K D   W +++     +G  E
Sbjct: 606 INEMPCKADALVWKTLLSACRTYGNTE 632


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/490 (42%), Positives = 281/490 (57%), Gaps = 21/490 (4%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D  +  FALKA A         Q HA +F+ G+ +DV +  +L+  YA CG +  A KVF
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVF 178

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKL-------FRRMQILFEPDGYTFQSITSACA 246
           D M  R + +WN ++    Q  E + AL L       FR +    EP+  T  +  SACA
Sbjct: 179 DEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACA 238

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES--MPKRDL 304
            L TL  G+  H +         V +V V N+LIDMY KCGSL  A +VF S  +  R L
Sbjct: 239 QLGTLKDGLAVHEFAR---TIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTL 295

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            S+N+ I   ++HG  E ALK FD +       P+ IT++ V+  CNH G+V +GR  FD
Sbjct: 296 VSYNATIQALSIHGHGEDALKLFDEMPAR--IEPDEITYLAVMGGCNHAGLVDDGRRVFD 353

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M     + P ++HYG +VDLL RAG + EA  ++ +MP   D V+W++LL A  K H +
Sbjct: 354 SM----RVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAA-KMHGN 408

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           V L+E  A ++ +  G    G YVLLS VYAS  RW DVG VR  M    V K PG S  
Sbjct: 409 VDLAELAATKLADL-GSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYT 467

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
           EIDG+ H+F  GD  H + ++IY  LD I  ++ + GY P+ S   + D  ++ KQ +L 
Sbjct: 468 EIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNV-LHDIGEEEKQYALS 526

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604
            HSE+LAIA G+++  PG  IRV KNLR C DCH V KLIS+ +N  II+RDRARFH F+
Sbjct: 527 YHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFE 586

Query: 605 DGSCSCMDYW 614
           DG CSC DYW
Sbjct: 587 DGHCSCRDYW 596


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 326/583 (55%), Gaps = 25/583 (4%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           +S+L+ ++  K   +LK+  AQ L   +P+     + Y+ ++  +   ++++ A   F  
Sbjct: 10  NSVLAGMS--KKRGKLKE--AQELFVKIPEPDA--VSYNTMLSCYVRNSNMERAQAFFED 63

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           +   ++ +WNT+I   A++     +A  LF        ++P K+   +      Y+    
Sbjct: 64  MPIKDTPSWNTMITGFAQNQQMD-KARDLFL-------IMPTKNVVTWNAMISGYVECGD 115

Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
               +   +F++     V    ++I  Y   G + LA ++F+ M E++LV+WN MI  ++
Sbjct: 116 L--DSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYI 173

Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
           +    +  +KLFR M     +P+  T  S    C+ L+ L LG   H  +   C   L  
Sbjct: 174 ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLV---CKSPLCD 230

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           D     SLI MYCKCG L+   ++F  +P+RD+ +WN++I G+A HG  + AL  FD ++
Sbjct: 231 DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMI 290

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            E+   P+ ITFV VL ACNH G    G  YF  M  +Y +    +HY C+VDLL RAG 
Sbjct: 291 -EKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGK 349

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451
           + EA+ L+  MP KP A ++ +LL AC + H +  ++E  +++++  +    +G YV L+
Sbjct: 350 LVEAVDLIEKMPFKPHAAVFGTLLGAC-RIHKNTEMAEFASQKLLNLDPASATG-YVQLA 407

Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
            VYA+ +RW+ V  VRK M    V K PG S IE+  +AH+F +GD  HP+   I+G L 
Sbjct: 408 NVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLK 467

Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL 571
            +++K+K  GY PD  + A+ D  ++ K+  L  HSE+LAIA G++ L PG PIRVFKNL
Sbjct: 468 ELEKKMKLAGYVPDL-EFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNL 526

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           RVC DCH   K IS+I   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 527 RVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           +L T V  N+ L  M  K G L  A+++F  +P+ D  S+N+++  +  +   E A  +F
Sbjct: 2   TLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFF 61

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
           + + ++++ S N++     ++       + + RD F +M  +  +T     +  ++    
Sbjct: 62  EDMPIKDTPSWNTM-----ITGFAQNQQMDKARDLFLIMPTKNVVT-----WNAMISGYV 111

Query: 388 RAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
             G++D AL L    P K   V W +++    K
Sbjct: 112 ECGDLDSALKLFEKAPFK-SVVAWTAMITGYMK 143


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/563 (36%), Positives = 318/563 (56%), Gaps = 13/563 (2%)

Query: 46   MSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLI 105
            +  LK++H  +L+      +  L+  + +  +A    L YA RVF+ I +    +WN LI
Sbjct: 766  LPSLKELHCYSLKQEF--VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 823

Query: 106  RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
               A+S D +       Q  I    +LPD  T    L AC+ L +   GK+ H  I +  
Sbjct: 824  GGHAQSNDPRLSLDAHLQMKIS--GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 881

Query: 166  LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
            L  D+++  S++  Y  CG L     +FD M ++SLVSWN +I  ++Q G  D AL +FR
Sbjct: 882  LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 941

Query: 226  RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            +M +   +  G +   +  AC+ L +L LG  AHAY L+H    L  D  +  SLIDMY 
Sbjct: 942  QMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL---LEDDAFIACSLIDMYA 998

Query: 285  KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            K GS+  + +VF  + ++   SWN++I+G+ +HG A+ A+K F+ +      +P+ +TF+
Sbjct: 999  KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ-RTGHNPDDLTFL 1057

Query: 345  GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN-MP 403
            GVL+ACNH G++ EG  Y D M + + + P L+HY C++D+L RAG +D+AL +V+  M 
Sbjct: 1058 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 1117

Query: 404  MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
             + D  IW+SLL +C + H ++ + E+VA ++ E E       YVLLS +YA   +W DV
Sbjct: 1118 EEADVGIWKSLLSSC-RIHQNLEMGEKVAAKLFELEPEKPEN-YVLLSNLYAGLGKWEDV 1175

Query: 464  GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
              VR+ M +  + K+ GCS IE++     F  G+      ++I     +++ K+   GY 
Sbjct: 1176 RKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYR 1235

Query: 524  PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
            PD + +   D  ++ K   LR HSE+LA+  G++    G  IRV+KNLR+C DCH   KL
Sbjct: 1236 PD-TMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKL 1294

Query: 584  ISRIFNVEIIVRDRARFHHFKDG 606
            IS++   EI+VRD  RFHHFK+G
Sbjct: 1295 ISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 11/324 (3%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL +  + K +   ++IH Q +  +   ++  +L    I  +A     D +  VF  + +
Sbjct: 445 LLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 503

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N F WN +I + +R+ +   + +  F  MI   ++LPD  T+P  +KACA +     G 
Sbjct: 504 KNLFQWNAVISSYSRN-ELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 562

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H  + K GLV DV++ N+L+ FY + G +  A ++FD M ER+LVSWN MI  F   G
Sbjct: 563 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 622

Query: 216 EFDSALKLFRRMQI-----LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
             + +  L   M        F PD  T  ++   CA    + LG   H + ++     L 
Sbjct: 623 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK---LRLD 679

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            ++++NN+L+DMY KCG +  A+ +F+    +++ SWN+++ GF+  G          ++
Sbjct: 680 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 739

Query: 331 VV-EESFSPNSITFVGVLSACNHR 353
           +   E    + +T +  +  C H 
Sbjct: 740 LAGGEDVKADEVTILNAVPVCFHE 763



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 186/390 (47%), Gaps = 20/390 (5%)

Query: 34   SSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF 90
            ++L++ L  C    ++   K +H  A++  L ++   +L  + +  ++    +  A  +F
Sbjct: 648  ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE--LVLNNALMDMYSKCGCITNAQMIF 705

Query: 91   YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
                N N  +WNT++   +   D      VL Q +    +V  D+ T   A+  C +   
Sbjct: 706  KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 765

Query: 151  FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
                K+ H +  K+  V +  + N+ +  YA CG L  A +VF  +  +++ SWN +I  
Sbjct: 766  LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 825

Query: 211  FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
              Q  +   +L    +M+I    PD +T  S+ SAC+ L +L LG   H +I+R+    L
Sbjct: 826  HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW---L 882

Query: 270  VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              D+ V  S++ +Y  CG L   + +F++M  + L SWN++I G+  +G  + AL  F +
Sbjct: 883  ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 942

Query: 330  LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH---YGC-LVDL 385
            +V+        I+ + V  AC+    +  GR+      + Y +  +LE      C L+D+
Sbjct: 943  MVL-YGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAFIACSLIDM 996

Query: 386  LARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             A+ G+I ++  + + +  K  A  W +++
Sbjct: 997  YAKNGSITQSSKVFNGLKEKSTAS-WNAMI 1025


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 308/572 (53%), Gaps = 49/572 (8%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRAC-ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139
             +D A   F Q+   +  TWN++I     R  D +  A+ +F +M+    + PD+ T  
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLR--ALDMFSKMLRDSMLSPDRFTLA 283

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK-------- 191
             L ACA L     G+Q H+HI   G      + N+LI  Y+ CG ++ A +        
Sbjct: 284 SVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343

Query: 192 -------------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
                                    +FD++ +R +V+W  MI  + Q G +  A+ LFR 
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRS 403

Query: 227 MQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M    + P+ YT  ++ S  + LA+L  G   H   ++  +   +  V V+N+LI MY K
Sbjct: 404 MVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGE---IYSVSVSNALITMYAK 460

Query: 286 CGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
            GS+  A + F+ +  +RD  SW S+I+  A HG AE AL+ F+ +++E    P+ IT+V
Sbjct: 461 AGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME-GLRPDHITYV 519

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
           GV SAC H G+V++GR YFD+M +   I P L HY C+VDL  RAG + EA   +  MP+
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVI--ESEGGICSGVYVLLSRVYASARRWND 462
           +PD V W SLL AC + + ++ L +  A++++  E E    SG Y  L+ +Y++  +W +
Sbjct: 580 EPDVVTWGSLLSAC-RVYKNIDLGKVAAERLLLLEPEN---SGAYSALANLYSACGKWEE 635

Query: 463 VGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522
              +RK M D  V KE G S IE+    H F   D  HPQ  +IY  +  I +++K  GY
Sbjct: 636 AAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGY 695

Query: 523 TPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTK 582
            PD + + + D  ++ K+  LR HSE+LAIA G+++      +R+ KNLRVC DCH   K
Sbjct: 696 VPD-TASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIK 754

Query: 583 LISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            IS++   EIIVRD  RFHHFKDG CSC DYW
Sbjct: 755 FISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 189/436 (43%), Gaps = 76/436 (17%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           +HA+ L   +P   +T   ++ ++  +A   D+D +   F ++   +S +W T+I    +
Sbjct: 66  LHARKLFDEMPL--RTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMI-VGYK 122

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
           ++    +AI +   M+ +G + P + T    L + A       GK+ H+ I K GL  +V
Sbjct: 123 NIGQYHKAIRIMGEMMREG-IEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNV 181

Query: 171 YINNSLIHFYASCG-------------------------------HLDLANKVFDNMLER 199
            ++NSL++ YA CG                                +DLA   F+ M ER
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 200 SLVSWNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWA 257
            +V+WN MI  + Q G    AL +F +M    +  PD +T  S+ SACA L  L +G   
Sbjct: 242 DIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQI 301

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ----------------------- 294
           H++I+           +V N+LI MY +CG ++ AR+                       
Sbjct: 302 HSHIV---TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358

Query: 295 ----------VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
                     +F+S+  RD+ +W ++I+G+  HG    A+  F  +V EE   PNS T  
Sbjct: 359 KLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQ-RPNSYTLA 417

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +LS  +    +  G+      +    I  V      L+ + A+AG+I  A      +  
Sbjct: 418 AMLSVASSLASLGHGKQIHGSAVKSGEIYSV-SVSNALITMYAKAGSITSASRAFDLIRC 476

Query: 405 KPDAVIWRSLLDACCK 420
           + D V W S++ A  +
Sbjct: 477 ERDTVSWTSMIIALAQ 492



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 69/312 (22%)

Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
           H  + K GLV  VY+ N+L++ Y+  G+   A K+FD M  R+  SWN ++ A+ + G+ 
Sbjct: 37  HCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDM 96

Query: 218 DSALKLFRR--------------------------------MQILFEPDGYTFQSITSAC 245
           DS+ + F R                                M+   EP  +T  ++ ++ 
Sbjct: 97  DSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASV 156

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC------------------- 286
           A    L  G   H++I++     L  +V V+NSL++MY KC                   
Sbjct: 157 AATRCLETGKKVHSFIVKL---GLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDIS 213

Query: 287 ------------GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
                       G +D+A   FE M +RD+ +WNS+I G+   G    AL  F +++ + 
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDS 273

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
             SP+  T   VLSAC +   +  G   +  ++   ++I+ ++     L+ + +R G ++
Sbjct: 274 MLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV--LNALISMYSRCGGVE 331

Query: 394 EALHLVSNMPMK 405
            A  L+     K
Sbjct: 332 TARRLIEQRGTK 343



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 262 LRHC---DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           L HC      LV  V + N+L+++Y K G    AR++F+ MP R   SWN+++  +A  G
Sbjct: 35  LVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRG 94

Query: 319 RAEAALKYFDRLVVEESFSPNSI 341
             +++ ++FDRL   +S S  ++
Sbjct: 95  DMDSSCEFFDRLPQRDSVSWTTM 117


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 211/531 (39%), Positives = 307/531 (57%), Gaps = 25/531 (4%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N  +W  +I   A++ +     + L +++ E   V+P+++   +     A L
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGE-----VNLARKLFE---VMPERNEVSWT----AML 243

Query: 149 FAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
             + Q       A +F       V   N+++  +   G +D A  VF+ M ER   +W+ 
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSA 303

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI A+ Q      AL  FR M      P+  +  SI + CA LA L  G   HA +LR C
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-C 362

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
             S   DV   ++LI MY KCG+LD A++VF +   +D+  WNS+I G+A HG  E AL 
Sbjct: 363 --SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  + +    SP+ IT++G L+AC++ G V EGR+ F+ M    +I P  EHY C+VDL
Sbjct: 421 IFHDMRLA-GMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDL 479

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L R+G ++EA  L+ NMP++PDAVIW +L+ AC + H +  ++E  AK+++E E G  +G
Sbjct: 480 LGRSGLVEEAFDLIKNMPVEPDAVIWGALMGAC-RMHRNAEIAEFAAKKLLELEPG-NAG 537

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-SHPQTK 504
            YVLLS +Y S  RW D   +RK ++ + + K PGCS IE D   H F +GD  +HP+  
Sbjct: 538 PYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHA 597

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS-SLRLHSERLAIALGILNLKPGM 563
            I   L+ +D  L   GY+ D S   ++ ++D+ ++S SLR HSER A+A G+L +  GM
Sbjct: 598 AILRILEKLDGLLMESGYSADGS--FVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGM 655

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLRVC DCH   KLI++I + EII+RD  RFHHFKDG CSC DYW
Sbjct: 656 PIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 37/260 (14%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM------ 227
           N+ I   A  G+++ A   F+ M  R+  S+N ++  + +    D+AL LFRRM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 228 --QILFEPDGYTFQSITSACAGLATLSL--GMWAHAYILR-HCDHSLVTDVL-------- 274
               L        Q++  A A LA++     + +   +LR +  H L+ D +        
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 275 ----VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                   L+      G ++ AR++F+ MP RD+ +W +++ G+   GR   A   FD +
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLAR 388
                   N +++  ++S     G V+  R  F+VM   NE + T +L  Y        +
Sbjct: 201 PKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGY-------IQ 248

Query: 389 AGNIDEALHLVSNMPMKPDA 408
           AG++++A  L + MP  P A
Sbjct: 249 AGHVEDAAELFNAMPEHPVA 268



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 142/357 (39%), Gaps = 82/357 (22%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRM---- 125
           +RI H A   +++ A   F  +    + ++N L+    R+   DA   A+ LF+RM    
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDA---ALGLFRRMPSRD 78

Query: 126 IEQGNVLPD-----KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
           +   N L       + T P A  A A +             F   +VS      SL+  Y
Sbjct: 79  LASYNALISGLSLRRQTLPDAAAALASI------------PFPPSVVS----FTSLLRGY 122

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240
              G L  A ++F  M ER+ VS+ V++   +  G  + A +LF  M     PD      
Sbjct: 123 VRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM-----PD------ 171

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
                                          DV+   +++  YC+ G +  AR +F+ MP
Sbjct: 172 ------------------------------RDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           KR++ SW ++I G+A +G    A K F+  V+ E    N +++  +L      G V +  
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFE--VMPER---NEVSWTAMLVGYIQAGHVEDAA 256

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + F+ M       PV      +V    R G +D A  +   M  + D   W +++ A
Sbjct: 257 ELFNAMPEH----PVAACNAMMVGFGQR-GMVDAAKTVFEKMCERDDGT-WSAMIKA 307



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 48/224 (21%)

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE-- 334
           N+ I    + G+++ AR  FE+MP R   S+N+++ G+  +   +AAL  F R+   +  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 335 --------------------------SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
                                      F P+ ++F  +L      G++++    F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASV 425
             +++     Y  L+  L  AG ++EA  L   MP + D V W ++L   C+      + 
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQAGRITEAR 194

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
            L +E+ K+ + S   + SG        YA      +V L RKL
Sbjct: 195 ALFDEMPKRNVVSWTAMISG--------YAQN---GEVNLARKL 227



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 39/230 (16%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
           S F      G   N+ S++S LT C +++ L   +++HA  LR +         + + I 
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSF--DMDVFAVSALIT 376

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +    +LD A RVF+  E  +   WN++I   A+    + QA+ +F  M   G + PD 
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGE-QALGIFHDMRLAG-MSPDG 434

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+  AL AC+Y     +G++         + + + +N+S                    
Sbjct: 435 ITYIGALTACSYTGKVKEGRE---------IFNSMTVNSS-------------------- 465

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
            +      ++ M+D   + G  + A  L + M +  EPD   + ++  AC
Sbjct: 466 -IRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV--EPDAVIWGALMGAC 512


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 332/592 (56%), Gaps = 26/592 (4%)

Query: 32  NHSSLLSSLTECKSMSQLK---QIHAQALRTAL--PQQHKTLLIYSRIIHFASFADLDYA 86
           + SS  S +  C ++ +L+   Q+H   ++      Q  +T L+   + +    A LD A
Sbjct: 294 SESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALM---VAYSKCTAMLD-A 349

Query: 87  FRVFYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
            R+F +I    N  +W  +I    ++ D K +A+ LF  M  +G V P++ T+   L A 
Sbjct: 350 LRLFKEIGCVGNVVSWTAMISGFLQN-DGKEEAVDLFSEMKRKG-VRPNEFTYSVILTAL 407

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             +       + HA + K        +  +L+  Y   G ++ A KVF  + ++ +V+W+
Sbjct: 408 PVI----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL-ATLSLGMWAHAYILR 263
            M+  + Q GE ++A+K+F  + +   +P+ +TF SI + CA   A++  G   H + ++
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                L + + V+++L+ MY K G+++ A +VF+   ++DL SWNS+I G+A HG+A  A
Sbjct: 524 S---RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKA 580

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L  F  +  +     + +TF+GV +AC H G+V EG  YFD+M+ +  I P  EH  C+V
Sbjct: 581 LDVFKEMK-KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMV 639

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           DL +RAG +++A+ ++ NMP    + IWR++L A C+ H    L    A+++I  +    
Sbjct: 640 DLYSRAGQLEKAMKVIENMPNPAGSTIWRTIL-AACRVHKKTELGRLAAEKIIAMKPED- 697

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           S  YVLLS +YA +  W +   VRKLM ++ V KEPG S IE+    + F AGD SHP  
Sbjct: 698 SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLK 757

Query: 504 KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGM 563
            QIY  L+ +  +LK  GY PD S   + D  D+ K++ L  HSERLAIA G++    G 
Sbjct: 758 DQIYMKLEDLSTRLKDLGYEPDTSY-VLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGS 816

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF-KDGSCSCMDYW 614
           P+ + KNLRVC DCH V KLI++I   EI+VRD  RFHHF  DG CSC D+W
Sbjct: 817 PLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 167/358 (46%), Gaps = 19/358 (5%)

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
           +VF +++  N  TW TLI   AR+     + + LF RM  +G   P+  TF  AL   A 
Sbjct: 149 KVFDEMKERNVVTWTTLISGYARN-SMNDEVLTLFMRMQNEG-TQPNSFTFAAALGVLAE 206

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
                +G Q H  + K GL   + ++NSLI+ Y  CG++  A  +FD    +S+V+WN M
Sbjct: 207 EGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSM 266

Query: 208 IDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  +   G    AL +F  M++ +      +F S+   CA L  L      H  +++   
Sbjct: 267 ISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK--- 323

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALK 325
           +  + D  +  +L+  Y KC ++  A ++F+ +    ++ SW ++I GF  +   E A+ 
Sbjct: 324 YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVD 383

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  +   +   PN  T+  +L+A     ++S    +  V+   Y  +  +     L+D 
Sbjct: 384 LFSEM-KRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVGT--ALLDA 437

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE-SEGGI 442
             + G ++EA  + S +  K D V W ++L      +A    +E   K   E ++GGI
Sbjct: 438 YVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAG----YAQTGETEAAIKMFGELTKGGI 490



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D   F   LK  A L     G+Q H    K G + DV +  SL+  Y    +     KVF
Sbjct: 92  DCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVF 151

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLS 252
           D M ER++V+W  +I  + +    D  L LF RMQ    +P+ +TF +     A      
Sbjct: 152 DEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG 211

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G+  H  +++   + L   + V+NSLI++Y KCG++  AR +F+    + + +WNS+I 
Sbjct: 212 RGLQVHTVVVK---NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMIS 268

Query: 313 GFALHGRAEAALKYF 327
           G+A +G    AL  F
Sbjct: 269 GYAANGLDLEALGMF 283



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 7/230 (3%)

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAG 247
           A+ +FD    R   S+  ++  F + G    A +LF  +  L  E D   F S+    A 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
           L     G   H   ++      + DV V  SL+D Y K  +    R+VF+ M +R++ +W
Sbjct: 106 LCDELFGRQLHCQCIKF---GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            ++I G+A +   +  L  F R+   E   PNS TF   L      G+   G     V++
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRM-QNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
               +   +     L++L  + GN+ +A  L     +K   V W S++  
Sbjct: 222 KN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISG 269


>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/467 (41%), Positives = 294/467 (62%), Gaps = 17/467 (3%)

Query: 24  NRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD- 82
           + NEG  +    ++S   +C+SM  L+Q+HA  ++T L Q    L +  +II F + ++ 
Sbjct: 42  SENEGFDSREERVMSVFKQCESMKHLEQLHAHVIQTGLEQ---NLFVMGKIIVFCAVSEC 98

Query: 83  --LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             +DYA RVF +IENP+ F WNT+IR   R+   + +A   ++RM  +G VL D  T+ F
Sbjct: 99  GSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPE-KAFEFYKRMQVKGEVL-DNFTYSF 156

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            +K C  L +   GKQ H ++ K GL   V++ N+L+H Y     ++ A  +F+ M +  
Sbjct: 157 LVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSY 216

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           LV+WN +ID  V  G +  A++LF RM Q   +PD  TF    SACA L  L +G   H+
Sbjct: 217 LVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHS 276

Query: 260 YILRHCDHSLVTDVL-VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            I    DH+ + +V+ V+NSLIDMY KCG ++ A ++F  M  R++ SWN++ILG A+HG
Sbjct: 277 CI----DHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHG 332

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             + AL+ F +++ E+  +PN +TF+GVL AC+H GMV EGR YFD+M  +YNI P ++H
Sbjct: 333 HGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKH 392

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           YG +VD+L RAG ++EA  L+ +MP++ ++++WR+LL A C+ H ++ L+E+V + ++E 
Sbjct: 393 YGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLL-AACRVHGNLELAEQVRQXLLEL 451

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK-EPGCSSI 484
           E    S  YVLL+ +YASA +WN V  VRK M  +GV K +PG S I
Sbjct: 452 EPDHSSD-YVLLANMYASAGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 223/675 (33%), Positives = 344/675 (50%), Gaps = 83/675 (12%)

Query: 10  PPTPQTHSHSIFNNNRNEG-SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
           P +P   + ++    R  G S +  +  +  +    ++ QL QIHAQ     L    +  
Sbjct: 16  PTSPPAKTTTVTTTTRAHGPSRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSR-- 73

Query: 69  LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMI 126
           ++   I    S   LDYA  +F   ++PN F +N LIR  A +   +      VL  R+ 
Sbjct: 74  VVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRL- 132

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
              ++ PD+ T PF LK+ A L     G+  H  + K GL  D ++  SL+  Y   G L
Sbjct: 133 ---SIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGEL 189

Query: 187 DLANKVFDN-----------------------------------MLERSLVSWNVMIDAF 211
               ++FD                                    M ER+  SWN +I+ F
Sbjct: 190 GFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGF 249

Query: 212 VQFGEFDSALKLFRRM-----------------------------QILFE---PDGYTFQ 239
           V+ G+ D A +LF +M                             ++L E   P+  T  
Sbjct: 250 VRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVV 309

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S   AC  +  L +G   H Y+     +    +  +  +L+DMY KCG++  A +VF   
Sbjct: 310 SALLACTKIGALQVGERIHNYL---SSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVET 366

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
             +DL +W+ +I G+A+HG  + AL+ F ++      +P+ + F+ +L+AC+H G V +G
Sbjct: 367 KGKDLLTWSVMIWGWAIHGCFDQALQCFVKM-KSAGINPDEVIFLAILTACSHSGNVDQG 425

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419
            ++F+ M  +Y+I P ++HY  +VDLL RAG +DEAL  + +MP+ PD VIW +L  A C
Sbjct: 426 LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA-C 484

Query: 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479
           + H ++ ++E  A+++++ E     G YV LS VYA+  RW DV  VR LM ++GV K+P
Sbjct: 485 RAHKNIEMAELTAEKLLQLEPK-HPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDP 543

Query: 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK 539
           G S IE++G  H F AGD +H + ++I   L+ I    K  GY P+ +      E ++ K
Sbjct: 544 GWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIE-EEEK 602

Query: 540 QSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRAR 599
           + +L  HSE+LA+A G+++  PG  IR+ KNLRVC DCH + K  S++   EII+RD  R
Sbjct: 603 EDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKR 662

Query: 600 FHHFKDGSCSCMDYW 614
           FHHFKDG+CSC DYW
Sbjct: 663 FHHFKDGTCSCGDYW 677


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 221/618 (35%), Positives = 329/618 (53%), Gaps = 44/618 (7%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
            +++L+       ++S  +++H+  L           L    I  +     L YA  +F 
Sbjct: 62  GYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFE 121

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA- 150
            + + N  TW   + A + +     +A+V F+RM + G   PD+ TF   L A A + A 
Sbjct: 122 SMPSRNVHTWTVAMAAFSHN-GCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAA 179

Query: 151 -FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM-- 207
              QG++ H +    GL+ +V +  ++I  Y  CG LD A   F+ +  ++ V+WN M  
Sbjct: 180 AIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMT 239

Query: 208 -----------------------------IDAFVQFGEFDSALKLFRRMQILFE--PDGY 236
                                        I A+ Q G    AL L+R M    +  P   
Sbjct: 240 NYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 299

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           TF ++   CA L+ L  G   HA +      +   ++LV+N+L+ MY KCG LD A  VF
Sbjct: 300 TFVTVIDVCAELSALKQGRAIHARVRAT---NFDANLLVSNALVHMYGKCGCLDEALDVF 356

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
            SM  +D  SWN+II  +A HG ++ AL  +  + ++    P  +TFVG+LSAC+H G+V
Sbjct: 357 HSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQ-GVKPTEVTFVGLLSACSHGGLV 415

Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
           ++G DYF  M +++ I P + H+GC++DLL R G + EA  ++ +MP++ +AV W SLL 
Sbjct: 416 ADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLG 475

Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
           AC K H  +      A QV++      SG YVLLS +YA+A RW DV  +RK+M  +GV 
Sbjct: 476 AC-KTHGDLKRGVRAADQVVDRVP-WTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVK 533

Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
           K PG S IEI  + HEF +GD+SHPQ ++IY  L  + E++K  GY PD S      E +
Sbjct: 534 KSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEE 593

Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
           + +   +  HSE+LAI  G + +     +R+ KNLRVC DCH  TK +SRI   +I+VRD
Sbjct: 594 EKEDLLV-CHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRD 652

Query: 597 RARFHHFKDGSCSCMDYW 614
            ARFH F++GSCSC DYW
Sbjct: 653 AARFHLFENGSCSCRDYW 670


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 212/590 (35%), Positives = 329/590 (55%), Gaps = 18/590 (3%)

Query: 30  FNNHSSLLSSLTECKSMSQL--KQIHAQALRTALP--QQHKTLLIYSRIIHFASFADLDY 85
           F N   + ++++ C S   +  KQ H  AL++ L   Q  K  LI      ++  +D+  
Sbjct: 121 FPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQL----YSKCSDVGA 176

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A ++ Y +   + F +N ++    +      +A+ + + +I +G +  +  T+    + C
Sbjct: 177 AIQILYTVPGNDIFCYNLVVNGLLQHTHM-AEAVDVLKLIISEG-IEWNNATYVTIFRLC 234

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L   + GKQ HA + K  +  DVYI +S+I  Y  CG++      FD +  R++VSW 
Sbjct: 235 ASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWT 294

Query: 206 VMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I A+ Q   F+ AL LF +M+I    P+ YT   + ++ AGL+ L LG   HA   R 
Sbjct: 295 SIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHA---RA 351

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               L  +V+V N+LI MY K G +  A+ VF +M   ++ +WN+II G + HG  + AL
Sbjct: 352 EKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEAL 411

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
             F  ++      PN +TF+GV+ AC H  +V EG  YF+ ++ ++ I P LEHY C+V 
Sbjct: 412 SMFQDMMATGE-RPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVG 470

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL+R+G +DEA + + +  +  D V WR+LL+AC   H       ++A+ +++ E     
Sbjct: 471 LLSRSGRLDEAENFMRSHQINWDVVSWRTLLNAC-YVHKHYDKGRKIAEYLLQLEPRDV- 528

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G Y+LLS ++A  RRW+ V  +RKLM ++ V KEPG S +EI  +AH F + D  HP+  
Sbjct: 529 GTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEAN 588

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
            IY  +  +  K++  GY PD     + D  D+ K  +L  HSE+LA+A G++    G P
Sbjct: 589 LIYENVKDLLSKIRPLGYVPDIDNV-LHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAP 647

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I V KNLR+C DCH   KLIS++ N  I+VRD  RFHHF++G CSC DYW
Sbjct: 648 ITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 136/305 (44%), Gaps = 15/305 (4%)

Query: 120 VLFQRMIEQGNVLPDKHTFPFAL-KACAYLFAFSQGKQAHAHI-FKRGLVSDVYIN--NS 175
           V F   + + N L   H  P  L K  A       G+  HAH+        D  +N  NS
Sbjct: 3   VKFTPFLSRSNFLASPHQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNS 62

Query: 176 LIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI---LFE 232
           LI+ Y  C  + +A K+FD+M  R++VSW+ ++  ++Q G      +LF++M +   +F 
Sbjct: 63  LINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIF- 121

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
           P+ Y   +  S+C     +  G   H Y L+     L     V N+LI +Y KC  +  A
Sbjct: 122 PNEYVIATAISSCDSQMYVE-GKQCHGYALK---SGLEFHQYVKNALIQLYSKCSDVGAA 177

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
            Q+  ++P  D+  +N ++ G   H     A+    +L++ E    N+ T+V +   C  
Sbjct: 178 IQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVL-KLIISEGIEWNNATYVTIFRLCAS 236

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR 412
              ++ G+     M+   +I   +     ++D+  + GN+         +  + + V W 
Sbjct: 237 LKDITLGKQVHAQMLKS-DIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSR-NVVSWT 294

Query: 413 SLLDA 417
           S++ A
Sbjct: 295 SIIAA 299



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 114/231 (49%), Gaps = 20/231 (8%)

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           NSLI++Y KC  + IAR++F+SMP+R++ SW++++ G+  +G      + F ++VV+++ 
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARAGNI 392
            PN       +S+C+ + M  EG+       + Y +   LE +      L+ L ++  ++
Sbjct: 121 FPNEYVIATAISSCDSQ-MYVEGKQ-----CHGYALKSGLEFHQYVKNALIQLYSKCSDV 174

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
             A+ ++  +P   + +   +L+     +H  +  + +V K +I       +  YV + R
Sbjct: 175 GAAIQILYTVP--GNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFR 232

Query: 453 VYASARRWNDVGLVRK-----LMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           + AS +   D+ L ++     L +D       G S I++ G      +G T
Sbjct: 233 LCASLK---DITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRT 280


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 213/593 (35%), Positives = 334/593 (56%), Gaps = 20/593 (3%)

Query: 22  NNNRNEGSF-----NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           ++N  EGS+       +++LL   T  K + Q + +HA  L++    +H  ++  + +  
Sbjct: 47  SSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIF--RHDIVMGNTLLNM 104

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A    L+ A +VF ++   +  TW TLI   ++  D    A++ F +M+  G   P++ 
Sbjct: 105 YAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH-DRPCDALLFFNQMLRFG-YSPNEF 162

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           T    +KA A       G Q H    K G  S+V++ ++L+  Y   G +D A  VFD +
Sbjct: 163 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL 222

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGM 255
             R+ VSWN +I    +    + AL+LF+ M +  F P  +++ S+  AC+    L  G 
Sbjct: 223 ESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGK 282

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
           W HAY+++  +  LV      N+L+DMY K GS+  AR++F+ + KRD+ SWNS++  +A
Sbjct: 283 WVHAYMIKSGE-KLVA--FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG  + A+ +F+ +       PN I+F+ VL+AC+H G++ EG  Y+++M  +  I P 
Sbjct: 340 QHGFGKEAVWWFEEMR-RVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPE 397

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
             HY  +VDLL RAG+++ AL  +  MP++P A IW++LL+AC + H +  L    A+ V
Sbjct: 398 AWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC-RMHKNTELGAYAAEHV 456

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
            E +     G +V+L  +YAS  RWND   VRK M + GV KEP CS +EI+   H F A
Sbjct: 457 FELDPDD-PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVA 515

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIAL 554
            D  HPQ ++I    + +  K+K  GY PD S   + VD+ +  ++ +L+ HSE++A+A 
Sbjct: 516 NDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE--REVNLQYHSEKIALAF 573

Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGS 607
            +LN  PG  I + KN+RVC DCH   KL S++   EIIVRD  RFHHFKD S
Sbjct: 574 ALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 211/531 (39%), Positives = 307/531 (57%), Gaps = 25/531 (4%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N  +W  +I   A++ +     + L +++ E   V+P+++   +     A L
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGE-----VNLARKLFE---VMPERNEVSWT----AML 243

Query: 149 FAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
             + Q       A +F       V   N+++  +   G +D A  VF+ M ER   +W+ 
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSA 303

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI A+ Q      AL  FR M      P+  +  SI + CA LA L  G   HA +LR C
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-C 362

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
             S   DV   ++LI MY KCG+LD A++VF +   +D+  WNS+I G+A HG  E AL 
Sbjct: 363 --SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  + +    SP+ IT++G L+AC++ G V EGR+ F+ M    +I P  EHY C+VDL
Sbjct: 421 IFHDMRLA-GMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDL 479

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L R+G ++EA  L+ NMP++PDAVIW +L+ AC + H +  ++E  AK+++E E G  +G
Sbjct: 480 LGRSGLVEEAFDLIKNMPVEPDAVIWGALMGAC-RMHRNAEIAEFAAKKLLELEPG-NAG 537

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-SHPQTK 504
            YVLLS +Y S  RW D   +RK ++ + + K PGCS IE D   H F +GD  +HP+  
Sbjct: 538 PYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHA 597

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS-SLRLHSERLAIALGILNLKPGM 563
            I   L+ +D  L   GY+ D S   ++ ++D+ ++S SLR HSER A+A G+L +  GM
Sbjct: 598 AILRILEKLDGLLMESGYSADGS--FVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGM 655

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLRVC DCH   KLI++I + EII+RD  RFHHFKDG CSC DYW
Sbjct: 656 PIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 37/260 (14%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM------ 227
           N+ I   A  G+++ A   F+ M  R+  S+N ++  + +    D+AL LFRRM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 228 --QILFEPDGYTFQSITSACAGLATLSL--GMWAHAYILR-HCDHSLVTDVL-------- 274
               L        Q++  A A LA++     + +   +LR +  H L+ D +        
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 275 ----VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                   L+      G ++ AR++F+ MP RD+ +W +++ G+   GR   A   FD  
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD-- 198

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLAR 388
              E    N +++  ++S     G V+  R  F+VM   NE + T +L  Y        +
Sbjct: 199 ---EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGY-------IQ 248

Query: 389 AGNIDEALHLVSNMPMKPDA 408
           AG++++A  L + MP  P A
Sbjct: 249 AGHVEDAAELFNAMPEHPVA 268



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 78/355 (21%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRM----IE 127
           +RI H A   +++ A   F  +    + ++N L+    R+      A+ LF+RM    + 
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRN-RLPDAALGLFRRMPSRDLA 80

Query: 128 QGNVLPD-----KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
             N L       + T P A  A A +             F   +VS      SL+  Y  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASI------------PFPPSVVS----FTSLLRGYVR 124

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSIT 242
            G L  A ++F  M ER+ VS+ V++   +  G  + A +LF  M     PD        
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM-----PD-------- 171

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
                                        DV+   +++  YC+ G +  AR +F+ MPKR
Sbjct: 172 ----------------------------RDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           ++ SW ++I G+A +G    A K F+  V+ E    N +++  +L      G V +  + 
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFE--VMPER---NEVSWTAMLVGYIQAGHVEDAAEL 258

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           F+ M       PV      +V    R G +D A  +   M  + D   W +++ A
Sbjct: 259 FNAMPEH----PVAACNAMMVGFGQR-GMVDAAKTVFEKMCERDDGT-WSAMIKA 307



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 37/200 (18%)

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE-- 334
           N+ I    + G+++ AR  FE+MP R   S+N+++ G+  +   +AAL  F R+   +  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 335 --------------------------SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
                                      F P+ ++F  +L      G++++    F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASV 425
             +++     Y  L+  L  AG ++EA  L   MP + D V W ++L   C+      + 
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQAGRITEAR 194

Query: 426 VLSEEVAKQVIESEGGICSG 445
            L +E+ K+ + S   + SG
Sbjct: 195 ALFDEMPKRNVVSWTAMISG 214



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 39/230 (16%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
           S F      G   N+ S++S LT C +++ L   +++HA  LR +         + + I 
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMD--VFAVSALIT 376

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +    +LD A RVF+  E  +   WN++I   A+      QA+ +F  M   G + PD 
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH-GLGEQALGIFHDMRLAG-MSPDG 434

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+  AL AC+Y     +G++         + + + +N+S                    
Sbjct: 435 ITYIGALTACSYTGKVKEGRE---------IFNSMTVNSS-------------------- 465

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
            +      ++ M+D   + G  + A  L + M +  EPD   + ++  AC
Sbjct: 466 -IRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV--EPDAVIWGALMGAC 512


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 209/566 (36%), Positives = 318/566 (56%), Gaps = 12/566 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K+IHA A++         L+  + I  +A    + Y  R F  + + +  +W T     A
Sbjct: 281 KEIHAYAIKNGFDSN--ILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           ++     QA+ L +++  +G +  D       L AC  L    + K+ H +  + GL SD
Sbjct: 339 QN-KCYLQALELLRQLQMEG-MDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SD 395

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-Q 228
             + N++I  Y  CG +D A ++F+++  + +VSW  MI  +V  G  + AL++F  M +
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              EPD  T  SI SA   L+TL  G   H +I+R      + +  ++N+L+DMY +CGS
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK---GFILEGSISNTLVDMYARCGS 512

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           ++ A ++F     R+L  W ++I  + +HG  EAA++ F R+  +E   P+ ITF+ +L 
Sbjct: 513 VEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMK-DEKIIPDHITFLALLY 571

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC+H G+V+EG+ + ++M  EY + P  EHY CLVDLL R   ++EA  +V +M  +P  
Sbjct: 572 ACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTP 631

Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
            +W +LL AC + H++  + E  A++++E +     G YVL+S V+A+  RW DV  VR 
Sbjct: 632 EVWCALLGAC-RIHSNKEIGEVAAEKLLELDLDN-PGNYVLVSNVFAANGRWKDVEEVRM 689

Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
            M   G+TK PGCS IE+    H F + D  HP+  +IY  L  + EKLK  G     ++
Sbjct: 690 RMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTK 749

Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
             + +  ++ K   L  HSERLAIA G+L    G PIRV KNLRVC DCH    L+SR F
Sbjct: 750 FVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFF 809

Query: 589 NVEIIVRDRARFHHFKDGSCSCMDYW 614
             E+IVRD +RFHHFKDG CSC D+W
Sbjct: 810 ERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 13/367 (3%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF-TWNTLIRACA 109
           +IH  A++          ++ S +  +A   D++ A ++F ++   N   +WN++I A +
Sbjct: 79  EIHGLAIKYGCDSF--VFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
            +     +A+ LF  M++ G V+ + +TF  AL+AC        G Q HA I K G V D
Sbjct: 137 GN-GMCTEALCLFSEMLKAG-VVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLD 194

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           VY+ N+L+  Y   G +  A  +F N+  + +V+WN M+  F+Q G +  AL+ F  +Q 
Sbjct: 195 VYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQN 254

Query: 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              +PD  +  SI  A   L  L  G   HAY ++   +   +++LV N+LIDMY KC  
Sbjct: 255 ADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK---NGFDSNILVGNTLIDMYAKCCC 311

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +    + F+ M  +DL SW +   G+A +     AL+   +L + E    ++     +L 
Sbjct: 312 MSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM-EGMDVDATMIGSILL 370

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC     + + ++     I      PVL++   ++D+    G ID A+ +  ++  K D 
Sbjct: 371 ACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DV 427

Query: 409 VIWRSLL 415
           V W S++
Sbjct: 428 VSWTSMI 434



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   + FTWN ++     + +A   A+ +++ M   G V  D +TFP  LKAC  +
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEA-LGALEMYREMRHLG-VSFDSYTFPVLLKACGIV 71

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-LVSWNVM 207
                G + H    K G  S V++ NSL+  YA C  ++ A K+FD M  R+ +VSWN +
Sbjct: 72  EDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSI 131

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I A+   G    AL LF  M +     + YTF +   AC   + + LGM  HA IL+   
Sbjct: 132 ISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILK--- 188

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
              V DV V N+L+ MY + G +  A  +F ++  +D+ +WNS++ GF  +G    AL++
Sbjct: 189 SGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEF 248

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
           F  L       P+ ++ + ++ A    G +  G++
Sbjct: 249 FYDL-QNADLKPDQVSIISIIVASGRLGYLLNGKE 282



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 10/240 (4%)

Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYT 237
            Y  CG +  A  +FD M ERS+ +WN M+  +V  GE   AL+++R M+ L    D YT
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 238 FQSITSACAGLATLSLGMWAHAYILRH-CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           F  +  AC  +  L  G   H   +++ CD    + V V NSL+ +Y KC  ++ AR++F
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCD----SFVFVVNSLVALYAKCNDINGARKLF 116

Query: 297 ESMPKR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           + M  R D+ SWNSII  ++ +G    AL  F  + ++     N+ TF   L AC     
Sbjct: 117 DRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEM-LKAGVVTNTYTFAAALQACEDSSF 175

Query: 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +  G      ++    +  V      LV +  R G + EA  +  N+  K D V W S+L
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVA-NALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSML 233



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 24/147 (16%)

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCGS+  A  +F+ M +R + +WN+++ G+  +G A  AL+ + R +     S +S 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMY-REMRHLGVSFDSY 59

Query: 342 TFVGVLSACN-----------HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           TF  +L AC            H   +  G D F  ++N             LV L A+  
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNS------------LVALYAKCN 107

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +I+ A  L   M ++ D V W S++ A
Sbjct: 108 DINGARKLFDRMYVRNDVVSWNSIISA 134


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/439 (42%), Positives = 272/439 (61%), Gaps = 5/439 (1%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           +A   ++  G   DV   N+++  Y   G L  A +VF  M ER+LVSW+ M+DA V+ G
Sbjct: 131 RARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAG 190

Query: 216 EFDSALKLF-RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
           EF  AL +F R M+  F PD     S+  ACA L  +  G W H Y+          +++
Sbjct: 191 EFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLM 250

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +  +L+DMYCKCG ++ A QVF+ + +RD+  WN++I G A++G  E AL+ F R++ ++
Sbjct: 251 LETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRML-QK 309

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
            F PN  TF+ VL AC H G V EG+  F  M  +Y I P  EHYGCL DLL RAGN++E
Sbjct: 310 GFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEE 368

Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
           A  L+ +MPM+P A  W +L+ +C + H  + + E V K++IE E     G YV+L  +Y
Sbjct: 369 AEALLLDMPMEPHASQWGALMSSC-QMHNDINVGERVGKRLIELEP-YDGGRYVVLFNLY 426

Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
           A   RW +   +R++M D+G  KE G S IE++G+ HEF +GDT HP T++IY  L+ I+
Sbjct: 427 AVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIE 486

Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
            +L+  GY  D SQ  M  + ++ K  +L  HSERLA+A GILN+  G+PIR+ KNLRVC
Sbjct: 487 RRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVC 546

Query: 575 KDCHEVTKLISRIFNVEII 593
           +DCH  +KL+S+++  EII
Sbjct: 547 RDCHVHSKLVSKLYEREII 565



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 10/282 (3%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +    DL  A  VF ++   N  +W+ ++ AC R+ +   +A+ +F RM+ +    PD  
Sbjct: 155 YGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFG-EALWVFDRMMRE-EFRPDVV 212

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFK---RGLVSDVYINNSLIHFYASCGHLDLANKVF 193
                LKACA+L A  +G+  H ++      G   ++ +  +L+  Y  CG ++ A +VF
Sbjct: 213 VLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVF 272

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLS 252
           D +  R +V WN MI      G  + AL+LFRRM Q  F P+  TF ++  AC     + 
Sbjct: 273 DGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVD 332

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS-WNSII 311
            G      +    D+ +         L D+  + G+++ A  +   MP     S W +++
Sbjct: 333 EGKRVFKSMQ---DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
               +H       +   RL+  E +       +  L A N R
Sbjct: 390 SSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGR 431



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 40/180 (22%)

Query: 274 LVNNSLIDMYC--------------------------------KCGSLDIARQVFESMPK 301
           +V NSL+ +YC                                K G L  AR+VF  MP+
Sbjct: 114 VVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPE 173

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR- 360
           R+L SW++++      G    AL  FDR++ EE F P+ +  V VL AC H G V  GR 
Sbjct: 174 RNLVSWSAMVDACVRAGEFGEALWVFDRMMREE-FRPDVVVLVSVLKACAHLGAVERGRW 232

Query: 361 --DYFDV-MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
              Y +           +LE    LVD+  + G +++A  +   +  + D V+W +++  
Sbjct: 233 VHRYLETGSFGGRRGNLMLET--ALVDMYCKCGCMEDAWQVFDGVHRR-DVVLWNAMIGG 289


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/428 (42%), Positives = 268/428 (62%), Gaps = 11/428 (2%)

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACA 246
           +A  VF+ M  R +V+WN MI  +V+   F+ AL+LFR M +   EPD YTF S+ + CA
Sbjct: 94  VAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCA 153

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            L  L    W H  ++   +  +  + +++++LIDMY KCG +  A+++F+ + + ++  
Sbjct: 154 KLGALKHAQWVHELLI---EKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCI 210

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           WN++I G A+HG A  A+K F ++ VE    P++ITF+G+L+AC+H G+V EGR YFD+M
Sbjct: 211 WNAMISGLAVHGLALDAIKVFTKMEVENVL-PDAITFLGILTACSHCGLVKEGRKYFDLM 269

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVV 426
            + Y++ P +EHYG +VDLL RAG ++EA  ++ +MPM+PD VIWR+LL AC        
Sbjct: 270 RSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGAC-----RTY 324

Query: 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEI 486
              E+ +  + +   + SG YVLLS +Y S +RW+    V ++M  KGV K  G S  E 
Sbjct: 325 KKPELGEAAMANISRLRSGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEW 384

Query: 487 DGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLH 546
            G  H F AGD SHP+T+ IY  L+ + ++ K  GY P      M D  ++ K+ +L  H
Sbjct: 385 AGFLHPFKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTM-DVSEEEKEGNLYHH 443

Query: 547 SERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDG 606
           SE+LA+A GIL    G  +R+ KNLR+C DCH   K++SR+ +  IIVRDR RFH F++G
Sbjct: 444 SEKLALAYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENG 503

Query: 607 SCSCMDYW 614
            CSC DYW
Sbjct: 504 LCSCGDYW 511



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 9/247 (3%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF ++   +  TWNT+I    R    + +A+ LF R + + NV PDK+TF   +  CA L
Sbjct: 98  VFNKMRARDVVTWNTMIGGYVRKARFE-EALRLF-RFMNKSNVEPDKYTFASVINGCAKL 155

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            A    +  H  + ++ +  +  ++++LI  Y+ CG +  A ++FD +   ++  WN MI
Sbjct: 156 GALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMI 215

Query: 209 DAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
                 G    A+K+F +M++    PD  TF  I +AC+    +  G     + L    +
Sbjct: 216 SGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEG--RKYFDLMRSRY 273

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGR---AEAA 323
           S+   +    +++D+  + G L+ A  + +SMP + D+  W +++     + +    EAA
Sbjct: 274 SVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAA 333

Query: 324 LKYFDRL 330
           +    RL
Sbjct: 334 MANISRL 340



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           D++  N +ID   +  +  +A+ VF  M  RD+ +WN++I G+    R E AL+ F R +
Sbjct: 75  DLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLF-RFM 133

Query: 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391
            + +  P+  TF  V++ C   G +   +   +++I E  I         L+D+ ++ G 
Sbjct: 134 NKSNVEPDKYTFASVINGCAKLGALKHAQWVHELLI-EKRIELNFILSSALIDMYSKCGK 192

Query: 392 IDEALHLVSNMPMKPDAVIWRSLLDA 417
           I  A  +   +  + +  IW +++  
Sbjct: 193 IQTAKEIFDGVQ-RNNVCIWNAMISG 217


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 211/611 (34%), Positives = 321/611 (52%), Gaps = 55/611 (9%)

Query: 44  KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNT 103
           ++++  K +HA  ++  + Q     L  + +  +       +A +VF ++ + +   W +
Sbjct: 17  RTLTTAKALHAHIVKLGIVQC--CPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWAS 74

Query: 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
           ++ A  ++ +   + + +F  +     + PD   F   +KACA L +   G+Q H H   
Sbjct: 75  VLTALNQA-NLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIV 133

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
               +D  + +SL+  YA CG L+ A  VFD++  ++ +SW  M+  + + G  + AL+L
Sbjct: 134 SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALEL 193

Query: 224 FR------------------------------------RMQILFEPDGYTFQSITSACAG 247
           FR                                    R+ IL   D     SI  ACA 
Sbjct: 194 FRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDIL---DPLVLSSIVGACAN 250

Query: 248 LATLSLGMWAHAYILRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           LA    G   H  ++     +L  D  V ++N+LIDMY KC  +  A+ +F  M  RD+ 
Sbjct: 251 LAASIAGRQVHGLVI-----ALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVV 305

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SW S+I+G A HG+AE AL  +D +V      PN +TFVG++ AC+H G V +GR+ F  
Sbjct: 306 SWTSLIVGMAQHGQAEKALALYDDMV-SHGVKPNEVTFVGLIYACSHVGFVEKGRELFQS 364

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M  +Y I P L+HY CL+DLL R+G +DEA +L+  MP  PD   W +LL AC K+    
Sbjct: 365 MTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSAC-KRQGRG 423

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            +   +A  ++ S        Y+LLS +YASA  W  V   R+ + +  V K+PG SS+E
Sbjct: 424 QMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVE 483

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR-GYTPDYSQAAMVDELDDGKQSSLR 544
           +      F+AG+TSHP  + I+  L  ++E+++ R GY PD S   ++ ++D+ ++  L 
Sbjct: 484 VRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSW--ILHDMDEQEKEKLL 541

Query: 545 L-HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSER A+A G+L   PG PIR+ KNLRVC DCH V K IS I   EIIVRD  R+HHF
Sbjct: 542 FWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHF 601

Query: 604 KDGSCSCMDYW 614
           K G CSC D+W
Sbjct: 602 KGGKCSCNDFW 612



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 5/198 (2%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
           L+ CA     +  K  HAHI K G+V    + N+L++ Y  CG    A +VFD M  R  
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 202 VSWNVMIDAFVQFGEFDSAL--KLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
           ++W  ++ A  Q       L             PD + F ++  ACA L ++  G   H 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
           + +         D +V +SL+DMY KCG L+ A+ VF+S+  ++  SW +++ G+A  GR
Sbjct: 130 HFIV---SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGR 186

Query: 320 AEAALKYFDRLVVEESFS 337
            E AL+ F  L V+  +S
Sbjct: 187 KEEALELFRILPVKNLYS 204


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 307/531 (57%), Gaps = 25/531 (4%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N  +W  +I   A++ +     + L +++ E   V+P+++   +     A L
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGE-----VNLARKLFE---VMPERNEVSWT----AML 243

Query: 149 FAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
             + Q       A +F       V   N+++  +   G +D A  VF+ M ER   +W+ 
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSA 303

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI A+ Q      AL  FR M      P+  +  SI + CA LA L  G   HA +LR C
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-C 362

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
             S   DV   ++LI MY KCG+LD A++VF +   +D+  WNS+I G+A HG  E AL 
Sbjct: 363 --SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  + +    SP+ IT++G L+AC++ G V EGR+ F+ M    +I P  EHY C+VDL
Sbjct: 421 IFHDMRLA-GMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDL 479

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L R+G ++EA  L+ NMP++PDAVIW +L+ AC + H +  ++E  AK+++E E G  +G
Sbjct: 480 LGRSGLVEEAFDLIKNMPVEPDAVIWGALMGAC-RMHRNAEIAEVAAKKLLELEPG-NAG 537

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-SHPQTK 504
            YVLLS +Y S  RW D   +RK ++ + + K PGCS IE D   H F +GD  +HP+  
Sbjct: 538 PYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHA 597

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS-SLRLHSERLAIALGILNLKPGM 563
            I   L+ +D  L   GY+ D S   ++ ++D+ ++S SLR HSER A+A G+L +  GM
Sbjct: 598 AILRILEKLDGLLMESGYSADGS--FVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGM 655

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLRVC DCH   KLI++I + EI++RD  RFHHFKDG CSC DYW
Sbjct: 656 PIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 37/260 (14%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM------ 227
           N+ I   A  G+++ A   F+ M  R+  S+N ++  + +    D+AL LFRRM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 228 --QILFEPDGYTFQSITSACAGLATLSL--GMWAHAYILR-HCDHSLVTDVL-------- 274
               L        Q++  A A LA++     + +   +LR +  H L+ D +        
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 275 ----VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
                   L+      G ++ AR++F+ MP RD+ +W +++ G+   GR   A   FD +
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLAR 388
                   N +++  ++S     G V+  R  F+VM   NE + T +L  Y        +
Sbjct: 201 PKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGY-------IQ 248

Query: 389 AGNIDEALHLVSNMPMKPDA 408
           AG++++A  L + MP  P A
Sbjct: 249 AGHVEDAAELFNAMPEHPVA 268



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 142/357 (39%), Gaps = 82/357 (22%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQG 129
           +RI H A   +++ A   F  +    + ++N L+    R+   DA   A+ LF+RM  + 
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDA---ALGLFRRMPSRD 78

Query: 130 ----NVLPD-----KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180
               N L       + T P A  A A +             F   +VS      SL+  Y
Sbjct: 79  LASYNALISGLSLRRQTLPDAAAALASI------------PFPPSVVS----FTSLLRGY 122

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240
              G L  A ++F  M ER+ VS+ V++   +  G  + A +LF  M     PD      
Sbjct: 123 VRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM-----PD------ 171

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
                                          DV+   +++  YC+ G +  AR +F+ MP
Sbjct: 172 ------------------------------RDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           KR++ SW ++I G+A +G    A K F+  V+ E    N +++  +L      G V +  
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFE--VMPER---NEVSWTAMLVGYIQAGHVEDAA 256

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + F+ M       PV      +V    R G +D A  +   M  + D   W +++ A
Sbjct: 257 ELFNAMPEH----PVAACNAMMVGFGQR-GMVDAAKTVFEKMRERDDGT-WSAMIKA 307



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 48/224 (21%)

Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE-- 334
           N+ I    + G+++ AR  FE+MP R   S+N+++ G+  +   +AAL  F R+   +  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 335 --------------------------SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
                                      F P+ ++F  +L      G++++    F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---HASV 425
             +++     Y  L+  L  AG ++EA  L   MP + D V W ++L   C+      + 
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQAGRITEAR 194

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469
            L +E+ K+ + S   + SG        YA      +V L RKL
Sbjct: 195 ALFDEMPKRNVVSWTAMISG--------YAQN---GEVNLARKL 227



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 39/230 (16%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
           S F      G   N+ S++S LT C +++ L   +++HA  LR +         + + I 
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSF--DMDVFAVSALIT 376

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +    +LD A RVF+  E  +   WN++I   A+    + QA+ +F  M   G + PD 
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGE-QALGIFHDMRLAG-MSPDG 434

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            T+  AL AC+Y     +G++         + + + +N+S                    
Sbjct: 435 ITYIGALTACSYTGKVKEGRE---------IFNSMTVNSS-------------------- 465

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245
            +      ++ M+D   + G  + A  L + M +  EPD   + ++  AC
Sbjct: 466 -IRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV--EPDAVIWGALMGAC 512


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 205/573 (35%), Positives = 301/573 (52%), Gaps = 45/573 (7%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           ++ +    D++ A  VF +++      WN +I    +S      A  LF+RM+ +  V  
Sbjct: 239 VVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQS-GMCADAFELFRRMVSE-KVPL 296

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFK--RGLVSD--VYINNSLIHFYASCGHLDLA 189
           D+ TF   L ACA    F  GK  H  I +     V +  + +NN+L+  Y+  G + +A
Sbjct: 297 DEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIA 356

Query: 190 NKVFDNMLERSLVSWN-------------------------------VMIDAFVQFGEFD 218
            ++FD M  + +VSWN                               VM+  +V  G  +
Sbjct: 357 KRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSE 416

Query: 219 SALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
            ALKLF +M+    +P  YT+    +AC  L  L  G   HA++++ C           N
Sbjct: 417 DALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNSA--GN 473

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
           +L+ MY KCG+++ AR VF  MP  D  SWN++I     HG    AL+ FD++V E    
Sbjct: 474 ALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAE-GID 532

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P+ I+F+ +L+ACNH G+V EG  YF+ M  ++ I+P  +HY  L+DLL R+G I EA  
Sbjct: 533 PDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARD 592

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
           L+  MP +P   IW ++L  C + +  +      A Q+         G Y+LLS  Y++A
Sbjct: 593 LIKTMPFEPTPSIWEAILSGC-RTNGDMEFGAYAADQLFRMIPQ-HDGTYILLSNTYSAA 650

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            RW D   VRKLM D+GV KEPGCS IE+    H F  GDT HP+ +++Y FL++I  ++
Sbjct: 651 GRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARM 710

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           +  GY PD ++  + D     K+  L  HSE+LA+  G+L L PG  + V KNLR+C DC
Sbjct: 711 RKLGYVPD-TKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDC 769

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           H     +S+    EI+VRD  RFHHFKDG CSC
Sbjct: 770 HTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 73/385 (18%)

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL--FAFSQGKQAHA 159
           N ++ A AR+  A P A+ +F  ++  G++ PD ++F   + A   +   A     Q H 
Sbjct: 129 NAMMSAFARASLAAP-AVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHC 187

Query: 160 HIFKRGLVSDVYINNSLIHFYASC----------------------------------GH 185
            + K G  + + ++N+LI  Y  C                                  G 
Sbjct: 188 SVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGD 247

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSA 244
           ++ A  VF+ +  +  V WN MI  +VQ G    A +LFRRM     P D +TF S+ SA
Sbjct: 248 VNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSA 307

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVL-VNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           CA       G   H  I+R   + +    L VNN+L+ +Y K G + IA+++F++M  +D
Sbjct: 308 CANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKD 367

Query: 304 LTSWNSIILGFA------------------------------LHGR-AEAALKYFDRLVV 332
           + SWN+I+ G+                               +HG  +E ALK F+++  
Sbjct: 368 VVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRA 427

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           E+   P   T+ G ++AC   G +  GR     ++ +            L+ + A+ G +
Sbjct: 428 ED-VKPCDYTYAGAIAACGELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAV 485

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDA 417
           ++A  +   MP   D+V W +++ A
Sbjct: 486 NDARLVFLVMP-NLDSVSWNAMISA 509



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 118/284 (41%), Gaps = 46/284 (16%)

Query: 174 NSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRM--QI 229
            SL+   A+ G L  A   FD +    R  V  N M+ AF +      A+ +F  +    
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 230 LFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
              PD Y+F ++ SA   +  L+       H  +L+    ++++   V+N+LI +Y KC 
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLS---VSNALIALYMKCD 212

Query: 288 SLDI---ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD---------------- 328
           + +    AR+V + MP +D  +W ++++G+   G   AA   F+                
Sbjct: 213 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 272

Query: 329 --------------RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN-EYNIT 373
                         R +V E    +  TF  VLSAC + G    G+     +I  + N  
Sbjct: 273 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFV 332

Query: 374 P--VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           P   L     LV L ++ G I  A  +   M +K D V W ++L
Sbjct: 333 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTIL 375


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 323/556 (58%), Gaps = 20/556 (3%)

Query: 69  LIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIE 127
            + +R+I  +A+   L  A +VF +    N F WN L++A     D   +A+     M  
Sbjct: 109 FLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKA-LALADHGDEALARLADMGR 167

Query: 128 QGNVLPDKHTFPFALKAC-----AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
            G V  D +++   LKAC     ++  A ++ ++ HAH  +RG     ++  +LI  YA 
Sbjct: 168 LG-VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAK 226

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQ 239
            G +  A  VF  M ER++VSW+ MI  + +      A++LF+ M        P+  T  
Sbjct: 227 LGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIV 286

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+ +ACAG+  LS G   HAYILR    SLV+   V N+L+ MY +CG L++ R +F+ +
Sbjct: 287 SVLNACAGVNALSHGKLLHAYILRRGFDSLVS---VLNALMAMYMRCGCLEVGRHIFKWI 343

Query: 300 P-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
             +RD+ SWNS+I G+ +HG    A++ F+ ++    FSP+ ITF+ VL AC+H G+V+E
Sbjct: 344 GHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMI-HVGFSPSIITFISVLGACSHAGLVNE 402

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
           G+  F+ M+ EY +TP  EHY C+VDLL RAG +DEA+ L+ +M ++P   +W +LL AC
Sbjct: 403 GKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGAC 461

Query: 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478
            + H  V  +E     + + E    +G YVLL+ +YA A+  N VG++++L+ +  + K 
Sbjct: 462 -RIHGHVEYAEIACSHLFDLEPR-NAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKV 519

Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
            GCS IE+    H F + D  +P  +Q+   +     ++K++GY PD +   + D   + 
Sbjct: 520 TGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPD-TGIVLYDIEGEE 578

Query: 539 KQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
           K+  L  HSE+LA+A G++N   G  IR+ KNLR+C+DCH VTK IS+    EI+VRD  
Sbjct: 579 KERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVN 638

Query: 599 RFHHFKDGSCSCMDYW 614
           RFHHF+DG CSC DYW
Sbjct: 639 RFHHFRDGVCSCGDYW 654


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 189/481 (39%), Positives = 293/481 (60%), Gaps = 16/481 (3%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L +C ++ +LK+IHA  ++ +L Q   + L+   +     + + +YA  +F  + +PN+F
Sbjct: 66  LKDCPNIVELKKIHAHIVKFSLSQS--SFLVTKMVDVCNHYGETEYANLLFKGVADPNAF 123

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIE----QGNVLPDKHTFPFALKACAYLFAFSQGK 155
            +N +IRA   +      AI ++++M+     +  + PDK TFPF +K+CA L  +  GK
Sbjct: 124 LYNAMIRAYKHN-KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 182

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER--SLVSWNVMIDAFVQ 213
           Q H H+FK G  S+  + NSL+  Y  C  LD A++VF+ M ER  ++ SW  ++  + +
Sbjct: 183 QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYAR 242

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G +  AL+ FRRMQ++  EPD  +  S+   CA L  L LG W H Y  +      + +
Sbjct: 243 IGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA---GFLRN 299

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           + V N+LI+MY KCGS+D  R++F+ M +RD+ SW+++I+G A HGRA  A++ F  +  
Sbjct: 300 ICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQ- 358

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +    P+ ITFVG+L+AC H G+++EG  YF+ M  +YNI P +EHYGCLV+LL  +G +
Sbjct: 359 KAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRL 418

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           D+AL LV  MP KPD+ IW SLL + C+ H ++ ++    + ++E E    +G YVLLS 
Sbjct: 419 DQALELVKKMPRKPDSPIWGSLLSS-CRSHGNLKIAVIAMEHLLELEPAD-TGNYVLLSN 476

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA   +W+ V  +RKLM  K + K PGCSSIE+D +  EF +GD S P +K I   L L
Sbjct: 477 LYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKL 536

Query: 513 I 513
           +
Sbjct: 537 L 537


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 314/567 (55%), Gaps = 13/567 (2%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           K+IH Q +R+ L  +   ++  S +  +A    +DYA R+F QI + +   WN +I    
Sbjct: 247 KEIHCQMMRSRL--ELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMI--GG 302

Query: 110 RSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
            S++A+  ++    ++M E G + PD  T    L  CA L A   GK  H    + G + 
Sbjct: 303 YSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLP 362

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM- 227
            + +  +L+  Y  CG L  A  +F  M ER+L+SWN MI ++ + GE   A+ LF+ + 
Sbjct: 363 HLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLC 422

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
               +PD  T  SI  A A LA+L      H Y+ +     L ++  V+NS++ MY KCG
Sbjct: 423 NKTLKPDATTIASILPAYAELASLREAEQIHGYVTKL---KLDSNTFVSNSIVFMYGKCG 479

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           +L  AR++F+ M  +D+ SWN++I+ +A+HG    +++ F  +  E+ F PN  TFV +L
Sbjct: 480 NLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMR-EKGFEPNGSTFVSLL 538

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
            +C+  G+V+EG +YF+ M  +YNI P +EHYGC++DL+ R GN+D A + +  MP+ P 
Sbjct: 539 LSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPT 598

Query: 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467
           A IW SLL A  +    V L+E  A+ ++  E    +G YVLLS +YA A RW DV  ++
Sbjct: 599 ARIWGSLLTA-SRNKGDVELAEIAAEHILSLEHD-NTGCYVLLSNMYAEAGRWEDVERIK 656

Query: 468 KLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYS 527
             M  +G+ K  GCS +++      F   D S  +   +Y  LD+I +K+    Y    +
Sbjct: 657 FHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLT 716

Query: 528 QAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
           +    D L+  + +S + HS RLAI  G+++   G P+ V KN+R+C+ CH   K IS  
Sbjct: 717 KFRPSD-LEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRISET 775

Query: 588 FNVEIIVRDRARFHHFKDGSCSCMDYW 614
              EIIVRD   FHHF  G CSC DYW
Sbjct: 776 TKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 206/435 (47%), Gaps = 24/435 (5%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIHF----ASFADLDY---AFRVFYQIENPNSFTWNTL 104
           +  +  +TA  +++++ L+    +      +S+ +  Y   A  +F  +   ++F WN +
Sbjct: 38  LKPRIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVM 97

Query: 105 IRACARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162
           IR     VD      A+  + RM E G V  D  T+PF +KAC  L+  ++G++ H  + 
Sbjct: 98  IRGF---VDNGLFWDAVDFYHRM-EFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVI 153

Query: 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALK 222
           K GL  D+YI NSLI  YA  G ++ A  VF  M  R LVSWN MI  +V  G+   +L 
Sbjct: 154 KSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLS 213

Query: 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281
            FR MQ    + D ++   I  AC+    L  G   H  ++R     L  DV+V  SL+D
Sbjct: 214 CFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMR---SRLELDVMVQTSLVD 270

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG +D A ++F+ +  + + +WN++I G++L+ ++  +  Y  ++       P+ I
Sbjct: 271 MYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWI 330

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T + +L  C     +  G+      I      P L     LVD+    G +  A  L   
Sbjct: 331 TMINLLPPCAQLEAILLGKSVHGFAIRN-GFLPHLVLETALVDMYGECGKLKPAECLFGQ 389

Query: 402 MPMKPDAVIWRSLLDACCK---KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           M  + + + W +++ +  K      ++ L +++  + ++ +    + +    + + AS R
Sbjct: 390 MNER-NLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAEL-ASLR 447

Query: 459 RWNDV-GLVRKLMTD 472
               + G V KL  D
Sbjct: 448 EAEQIHGYVTKLKLD 462


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 320/569 (56%), Gaps = 33/569 (5%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS-- 111
           A+ L   +P++   +++ + I  +     LD A  +F +++  N FTW T++   A++  
Sbjct: 164 AKKLFDMIPEK-DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGR 222

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ-GKQAHA-HIFKRGLVSD 169
           VD    A  LF+       V+P+++   +     A L  ++Q G+   A  +F+   V  
Sbjct: 223 VDV---ARKLFE-------VMPERNEVSWT----AMLMGYTQSGRMKEAFELFEAMPVKW 268

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           +   N +I  +   G +  A  +F+ M ER   +WN MI  F + G    AL LF RMQ 
Sbjct: 269 IVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQ- 327

Query: 230 LFEPDGYTFQS---ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
             E     F S   + S CA LA+L  G   HA ++R        D+ V + LI MY KC
Sbjct: 328 -REGVALNFPSMISVLSVCASLASLDHGRQVHARLVRS---EFDQDLYVASVLITMYVKC 383

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G L  A+ +F     +D+  WNS+I G++ HG  E AL  F  +       P+ +TF+GV
Sbjct: 384 GDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMC-SSGVQPDEVTFIGV 442

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC++ G V EG + F+ M   Y + P +EHY C+VDLL RAG +DEA+ LV  MPM+P
Sbjct: 443 LSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEP 502

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           DA++W +LL AC + H  + L+E   +++ + E    +G YVLLS +YA+  RW DV ++
Sbjct: 503 DAIVWGALLGAC-RNHMKLDLAEVAVEKLAKLEPK-NAGPYVLLSHMYATKGRWRDVEVL 560

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-SHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           RK + ++ V K PGCS IE++   H F  GD+ SHP+   I   L+ +   L+  GY PD
Sbjct: 561 RKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPD 619

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            S   + D  ++ K  SL  HSERLA+A G+L +  GMPIRV KNLRVC DCH   KLI+
Sbjct: 620 GS-FVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIA 678

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++   EII+RD  RFHHFKDGSCSC D+W
Sbjct: 679 KVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 172/393 (43%), Gaps = 38/393 (9%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF--TWNTLIRACAR 110
           +A  LR  + Q        S I  +    D+  A +VF     P     +WN ++ A   
Sbjct: 5   YAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFE 64

Query: 111 SVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH-IFKRGLVS 168
           S   KP+ A++LF +M       P ++T  F      Y+     G  A A  +F      
Sbjct: 65  S--HKPRDALLLFDQM-------PQRNTVSFNGMISGYV---KNGMVADARKVFDVMPER 112

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           +V    S++  Y   G ++ A K+F  M  R++VSW VMI   ++    D A KLF    
Sbjct: 113 NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLF---D 169

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
           ++ E D      +T+   G     +G    A  L   D   V +V    +++  Y K G 
Sbjct: 170 MIPEKDVVV---VTNMIGGYC--QVGRLDEAREL--FDEMKVRNVFTWTTMVSGYAKNGR 222

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +D+AR++FE MP+R+  SW ++++G+   GR + A + F+ + V+   + N +     L+
Sbjct: 223 VDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLA 282

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
              HR      R  F+ M      T     +  ++ +  R G   EAL L + M  +  A
Sbjct: 283 GEMHR-----ARMMFEGMKERDEGT-----WNAMIKVFERKGLDLEALGLFARMQREGVA 332

Query: 409 VIWRSLLD--ACCKKHASVVLSEEVAKQVIESE 439
           + + S++   + C   AS+    +V  +++ SE
Sbjct: 333 LNFPSMISVLSVCASLASLDHGRQVHARLVRSE 365



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 41/239 (17%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRII 75
            +F   + EG   N  S++S L+ C S++ L   +Q+HA+ +R+   Q    L + S +I
Sbjct: 321 GLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQD---LYVASVLI 377

Query: 76  -HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
             +    DL  A  +F +    +   WN++I   ++      +A+ +F  M   G V PD
Sbjct: 378 TMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQH-GLGEEALNVFHDMCSSG-VQPD 435

Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
           + TF   L AC+Y     +G +    IF+                   C +         
Sbjct: 436 EVTFIGVLSACSYSGKVKEGFE----IFE----------------AMKCTY--------- 466

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSL 253
             +E  +  +  M+D   + G  D A++L  +M +  EPD   + ++  AC     L L
Sbjct: 467 -QVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPM--EPDAIVWGALLGACRNHMKLDL 522


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/590 (34%), Positives = 333/590 (56%), Gaps = 15/590 (2%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
           F+  + L+  L +C  ++ +   H   L++     + T      I  +      + A ++
Sbjct: 27  FHTKTQLIQRLQDCNDITSVSFSHTNVLKSGF--LNDTFTTNHLINSYVRIRRTNDASQL 84

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F ++  PN  ++ +L+    + V     A+++F +M+E   VLP+  TF   + AC+ L 
Sbjct: 85  FEEMREPNVISFTSLMAGFIK-VGRPKSALLIFCKMLESW-VLPNAFTFATVVNACSMLA 142

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               G++ H+H+   G+  ++ + +SLI  Y  C ++D A +VFD M  R++VSW  MI 
Sbjct: 143 DLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMIT 202

Query: 210 AFVQFGEFDSALKLFRRMQ--ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           A+ Q    + AL+LFR      L  P+ +   S+ +ACA L  L  G  AHA ++R    
Sbjct: 203 AYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHE 262

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           S   DV V ++L+DMY KCG +  + +VF  +P   +  + S+I+G A +G  + +L  F
Sbjct: 263 S--NDV-VASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIF 319

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
             ++ +    PN +TFVGVL AC+H G+V +G +Y   M  ++ + P  +HY C+VD+L 
Sbjct: 320 KEML-DRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLG 378

Query: 388 RAGNIDEALHLVSNMPMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           R G +DEA  L  ++ ++PD  A++W +LL A  + +  V ++ E +K +IES   + + 
Sbjct: 379 RTGRLDEAHQLAKSIQVEPDQGALLWGTLLSAS-RLYGRVDIAVEASKWLIESNQQV-AA 436

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH-PQTK 504
            YV +S  YA A +W +V  +R  M   GV KEPGCS +EI   A+ F+AGD S   +  
Sbjct: 437 AYVTMSNTYAMAGKWENVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARGS 496

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           ++   L  ++ ++K RGY         +D  ++ K+  + LHSERLA+A G++++  G+ 
Sbjct: 497 EVASLLRELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGVT 556

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLR+C+DCHE  KLIS I   + +VRD  RFHHF++GSC+C D+W
Sbjct: 557 IRVMKNLRMCRDCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW 606


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 188/451 (41%), Positives = 276/451 (61%), Gaps = 16/451 (3%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           DV    +++   A+ G  D A ++FD M +R  V+WN MI  +V  G    AL+LF  M+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 229 ILFEPDG-YTFQSITSACAGLATLSLGMWAHAYILRHCDHS--LVTDVLVNNSLIDMYCK 285
                 G  T  S  +ACA L  L  G W H+     C HS  +   V +  +LIDMY K
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHS-----CAHSRGMRLSVTLGTALIDMYSK 381

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG++  A +VF+SM +R++ +W S + G A++G     L  F R+       PN +TFV 
Sbjct: 382 CGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRME-STGVEPNGVTFVV 440

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL  C+  G+V EGR  FD M + + I P LEHYGC+VDL  RAG +D+A++ ++ MP++
Sbjct: 441 VLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLE 500

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWNDV 463
           P   +W +LL+A  + H +V L +    ++  IES+       +VLLS +YA ++ W  V
Sbjct: 501 PHEGVWGALLNAS-RIHKNVELGKYAMDKLMAIESKN---DAAHVLLSNIYADSQNWKGV 556

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR +M  KGV K PGCS+IE+ G  HEFF G  +HP+ K+I   L  ++++L+ +GY 
Sbjct: 557 SNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYI 616

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
            + ++  + D  ++ K+ ++ LHSE+LAIA G++ L   M IR+ KNLRVC+DCH+ TK+
Sbjct: 617 AN-TKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKM 675

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++FN EI++RDR RFHHFKDG+CSC DYW
Sbjct: 676 ISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 207/491 (42%), Positives = 278/491 (56%), Gaps = 21/491 (4%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  +  FALKA A         Q HA + + G+ +DV +  +L+  YA CG L  A KV
Sbjct: 111 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 170

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSAC 245
           FD M  R + +WN ++    Q  E + AL LF R+   F       EP+  T  ++ SAC
Sbjct: 171 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSAC 230

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-- 303
           A +  L  GM+ H +  +     L  +V V NSLIDMY KCGSL  A  VF S+   D  
Sbjct: 231 AQIGLLKDGMYVHEFAKKF---GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRT 287

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           L S+N+ I   ++HG    AL+ FD +       P+ +T++ VL  CNH G+V +G   F
Sbjct: 288 LVSYNAAIQAHSMHGHGGDALRLFDEMPTR--IEPDGVTYLAVLCGCNHSGLVDDGLRVF 345

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M     + P ++HYG +VDLL RAG + EA   V +MP   D V+W++LL A  K H 
Sbjct: 346 NSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAA-KMHG 400

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
            V L+E  A ++ E  G    G YVLLS VYAS  RW DVG VR  M    V K PG S 
Sbjct: 401 VVELAELAANKLAEL-GSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSY 459

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
            EIDG+ H+F  GD  HP+ ++IY  L+ I  ++   GY P+ S   + D  ++ KQ +L
Sbjct: 460 TEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV-LHDIGEEEKQYAL 518

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G++   PG  +RV KNLR+C DCH V KLIS+ +   I++RDRARFH F
Sbjct: 519 CYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRF 578

Query: 604 KDGSCSCMDYW 614
           +DG CSC DYW
Sbjct: 579 EDGQCSCRDYW 589


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 277/491 (56%), Gaps = 21/491 (4%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  +  FALKA A         Q HA + + G+ +DV +  +L+  YA CG L  A KV
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 168

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSAC 245
           FD M  R + +WN ++    Q  E + AL LF R+   F       EP+  T  +  SAC
Sbjct: 169 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSAC 228

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-- 303
           A +  L  GM+ H +  R     L  +V V NSLIDMY KCGSL  A  VF S+   D  
Sbjct: 229 AQIGLLKDGMYVHEFAKRF---GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQT 285

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           L S+N+ I   ++HG    AL+ FD +       P+ +T++ VL  CNH G+V +G   F
Sbjct: 286 LVSYNAAIQAHSMHGHGGDALRLFDEMPTR--IEPDGVTYLAVLCGCNHSGLVDDGLRVF 343

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M     + P ++HYG +VDLL RAG + EA   V +MP   D V+W++LL A  K H 
Sbjct: 344 NSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAA-KMHG 398

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
            V L+E  A ++ E  G    G YVLLS VYAS  RW DVG VR  M    V K PG S 
Sbjct: 399 VVELAELAANKLAEL-GSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSY 457

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
            EIDG+ H+F  GD  HP+ ++IY  L+ I  ++   GY P+ S   + D  ++ KQ +L
Sbjct: 458 TEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV-LHDIGEEEKQYAL 516

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G++   PG  +RV KNLR+C DCH V KLIS+ +   I++RDRARFH F
Sbjct: 517 CYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRF 576

Query: 604 KDGSCSCMDYW 614
           +DG CSC DYW
Sbjct: 577 EDGQCSCRDYW 587


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 204/534 (38%), Positives = 295/534 (55%), Gaps = 13/534 (2%)

Query: 82   DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            +L+ A  VF ++++ +  +W  ++ A A + D K +   LF+RM  +G V+PDK T    
Sbjct: 587  ELEQARSVFNEMDHGDVVSWTAMVSATAENRDFK-EVHNLFRRMQLEG-VIPDKFTLATT 644

Query: 142  LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
            L  C        GK  HA + + GL +D+ + N+L++ Y++CG    A   F+ M  R L
Sbjct: 645  LDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 202  VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
            VSWN+M  A+ Q G    A+ LFR+MQ+   +PD  TF +  +   G A +S G   HA 
Sbjct: 705  VSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHAL 764

Query: 261  ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
                 +  L +DV V   L+ +Y KCG LD A  +F       +   N+II   A HG +
Sbjct: 765  A---AESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFS 821

Query: 321  EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
            E A+K F ++  +E   P+  T V ++SAC H GMV EG   F  M   + I+P LEHY 
Sbjct: 822  EEAVKMFWKMQ-QEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYA 880

Query: 381  CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
            C VDLL RAG ++ A  ++  MP + + ++W SLL   CK      L E  A++++E + 
Sbjct: 881  CFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL-GTCKLQGDAELGERCAQRILELDP 939

Query: 441  GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
               S  +V+LS +Y +  +W D  + RK M D+ V   PG S  EI    HEF AGD SH
Sbjct: 940  H-NSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSH 998

Query: 501  PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
            P+T +IY  LD ++  ++  GY  D      +D  D+ K+ +L  HSER+AIA G++   
Sbjct: 999  PKTDEIYVVLDKLELLMRRAGYEADKG----LDVEDELKEKALGYHSERIAIAFGLIATP 1054

Query: 561  PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            P   +++ KNLRVC DCH  TK IS +   EIIVRD  RFHHF +G+CSC D W
Sbjct: 1055 PETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 194/398 (48%), Gaps = 21/398 (5%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFR 88
              +++LL S  +   +++ K  H + +  A  +QH  L + + +I+ +     L+ A  
Sbjct: 25  LQEYTALLQSCVDSNDLAKGKHAH-ELIANAGLEQH--LFLGNCLINMYVRCGSLEEAHA 81

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++E  N  +W  LI A A+   A  +A  LF+ M+ + +  P+ +T    L ACA  
Sbjct: 82  IFSKMEERNVVSWTALISANAQ-CGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANS 140

Query: 149 FAFSQGKQAHAHIFKRGL----VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
              + G+  HA I++ GL     +   + N++I+ YA CG L+ A  VF  + E+ +VSW
Sbjct: 141 RDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSW 200

Query: 205 NVMIDAFVQFGEF-DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
             M  A+ Q   F   AL++FR M +    P+  TF +   AC    +L  G W H+  L
Sbjct: 201 TAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC---TSLRDGTWLHS--L 255

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGR 319
            H + SL  D L +N+LI+MY KCG  + A  VF++M  R   DL SWN++I      GR
Sbjct: 256 LH-EASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGR 314

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              A+  F RL + E   PNS+T + +L+A    G+       F   I E      +   
Sbjct: 315 HGDAMAIFRRLRL-EGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIG 373

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             ++ + A+ G    A  +   +  K D + W ++L A
Sbjct: 374 NAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 151/292 (51%), Gaps = 15/292 (5%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D   +   L++C      ++GK AH  I   GL   +++ N LI+ Y  CG L+ A+ +F
Sbjct: 24  DLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAGLA 249
             M ER++VSW  +I A  Q G F  A  LFR M  L E    P+ YT  ++ +ACA   
Sbjct: 84  SKMEERNVVSWTALISANAQCGAFARAFALFRTM--LLESSAAPNSYTLVAMLNACANSR 141

Query: 250 TLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
            L++G   HA I     + +  T  LV N++I+MY KCGSL+ A  VF ++P++D+ SW 
Sbjct: 142 DLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWT 201

Query: 309 SIILGFALHGR-AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           ++   +A   R    AL+ F  +++ +  +PN ITF+  L AC     + +G  +   ++
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLL-QPLAPNVITFITALGACTS---LRDG-TWLHSLL 256

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP--DAVIWRSLLDA 417
           +E ++         L+++  + G+ + A  +   M  +   D V W +++ A
Sbjct: 257 HEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISA 308



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 172/376 (45%), Gaps = 24/376 (6%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQAL---RTALPQQHKTLLIYSRIIHFASFADLDY 85
           N  S ++ L  C +   L   ++IH+  L   R  +     T+L+      +     +  
Sbjct: 436 NKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVS----MYGKCGSISE 491

Query: 86  AFRVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           A  VF ++  P+    TWN ++ A A++ D   +A      M+ QG VLPD  +F   L 
Sbjct: 492 AELVFKEMPLPSRSLVTWNVMLGAYAQN-DRSKEAFGALMEML-QGGVLPDALSFTSVLS 549

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           +C   +   + +     I + G  S   +  +LI  +  C  L+ A  VF+ M    +VS
Sbjct: 550 SC---YCSQEAQVLRMCILESGYRS-ACLETALISMHGRCRELEQARSVFNEMDHGDVVS 605

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           W  M+ A  +  +F     LFRRMQ+    PD +T  +    C    TL LG   HA + 
Sbjct: 606 WTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV- 664

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
              +  L  D+ V N+L++MY  CG    A   FE+M  RDL SWN +   +A  G A+ 
Sbjct: 665 --TEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A+  F ++ + E   P+ +TF   L+      +VS+G+  F  +  E  +   +     L
Sbjct: 723 AVLLFRQMQL-EGVKPDKLTFSTTLNVSGGSALVSDGK-LFHALAAESGLDSDVSVATGL 780

Query: 383 VDLLARAGNIDEALHL 398
           V L A+ G +DEA+ L
Sbjct: 781 VKLYAKCGKLDEAMSL 796



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 184/403 (45%), Gaps = 30/403 (7%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKT--LLIYSRIIHFASFADLDYA 86
           N  +L++ L  C +   L   + IHA      L +   T  L+  + I  +A    L+ A
Sbjct: 126 NSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDA 185

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
             VF  I   +  +W  +  A A+     P A+ +F+ M+ Q  + P+  TF  AL AC 
Sbjct: 186 IAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQ-PLAPNVITFITALGACT 244

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVS 203
            L     G   H+ + +  L  D   +N+LI+ Y  CG  + A  VF  M  R    LVS
Sbjct: 245 SL---RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVS 301

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI A V+ G    A+ +FRR+++    P+  T  +I +A A  + +  G  A  +  
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA-SGVDFGA-ARGFHG 359

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
           R  +   + DV++ N++I MY KCG    A  VF  +  K D+ SWN+++        A 
Sbjct: 360 RIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTML-------GAS 412

Query: 322 AALKYFDRLV------VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
              K F ++V      +     PN ++F+ +L+AC++   +  GR    +++        
Sbjct: 413 EDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVE 472

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI-WRSLLDA 417
                 LV +  + G+I EA  +   MP+   +++ W  +L A
Sbjct: 473 SSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 214/538 (39%), Positives = 307/538 (57%), Gaps = 27/538 (5%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
           L  A  +F ++   N  +W T+I    ++  VD    A  LF+       V+P+K+   +
Sbjct: 187 LAEARELFDEMPRRNVISWTTMISGYVQNGQVDV---ARKLFE-------VMPEKNEVSW 236

Query: 141 ALKACAYLFAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE 198
                A L  ++QG +    + +F    V  V   N++I  +   G +  A +VFD + E
Sbjct: 237 T----AMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIRE 292

Query: 199 RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLATLSLGMWA 257
           +   +W+ MI  + + G    AL LF  MQ       + +  S+ S CA LA+L  G   
Sbjct: 293 KDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQV 352

Query: 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH 317
           HA +++       +DV V + LI MY KCG L  ARQ+F+    +D+  WNSII G+A H
Sbjct: 353 HAELVKS---QFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQH 409

Query: 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE 377
           G  E AL+ F  +      + + +TFVGVLSAC++ G V EG + F+ M ++Y + P  E
Sbjct: 410 GLVEEALQVFHEMC-SSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTE 468

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
           HY C+VDLL RAG +++A+ L+  MP++ DA+IW +LL AC + H ++ L+E  AK++++
Sbjct: 469 HYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGAC-RTHMNMNLAEVAAKKLLQ 527

Query: 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAG- 496
            E    +G Y+LLS +YAS  RW DV  +R+ M  K V+K PGCS IE++   H F  G 
Sbjct: 528 LEPK-NAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGV 586

Query: 497 DTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556
            T HP+   I   L+ +D  L+  GY PD S   + D  ++ K  SL  HSERLA+A G+
Sbjct: 587 STKHPELSSIMKMLEKLDGMLREAGYYPD-SSFVLHDVDEEEKVRSLGHHSERLAVAFGL 645

Query: 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           L +  GMPIRV KNLRVC DCH   KLI++I   EII+RD  RFHHFKDG CSC DYW
Sbjct: 646 LKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 66/352 (18%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131
           S+I  +A    ++ A RVF ++ +    +WN+++    ++ +   +A  LF +M      
Sbjct: 21  SQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQN-NRPREARYLFDKM------ 73

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            P+++T  +                        GL+S  Y+ N ++           A K
Sbjct: 74  -PERNTVSW-----------------------NGLISG-YVKNRMV---------SEARK 99

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251
            FD M ER++VSW  M+  +VQ G    A  LF +M     P+     S T    GL  +
Sbjct: 100 AFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM-----PEKNVV-SWTVMLGGLIQV 153

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
                A        D   V DV+   ++I  YC+ G L  AR++F+ MP+R++ SW ++I
Sbjct: 154 RRIDEARGLF----DIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMI 209

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+  +G+ + A K F+  V+ E    N +++  +L      G + E  + FD M     
Sbjct: 210 SGYVQNGQVDVARKLFE--VMPEK---NEVSWTAMLMGYTQGGRIEEASELFDAM----- 259

Query: 372 ITPVLEHYGCLVDLL--ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
             PV     C   +L   + G + +A  +   +  K D   W +++    +K
Sbjct: 260 --PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGT-WSAMIKVYERK 308



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 130/308 (42%), Gaps = 49/308 (15%)

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           NS I  YA  G ++ A +VFD M ++ +VSWN M+  + Q      A  LF +M     P
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM-----P 74

Query: 234 D-----------GYTFQSITS----ACAGLATLSLGMWAHAYILRHCDHSLVTDV----- 273
           +           GY    + S    A   +   ++  W  A +  +    LV++      
Sbjct: 75  ERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWT-AMVRGYVQEGLVSEAETLFW 133

Query: 274 -LVNNSLIDMYCKCGSL------DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
            +   +++      G L      D AR +F+ MP +D+ +  ++I G+   GR   A + 
Sbjct: 134 QMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAREL 193

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM--INEYNITPVLEHYGCLVD 384
           FD     E    N I++  ++S     G V   R  F+VM   NE + T +L  Y     
Sbjct: 194 FD-----EMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGY----- 243

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
              + G I+EA  L   MP+K  AV+  + +     ++  V  + +V  Q+ E + G  S
Sbjct: 244 --TQGGRIEEASELFDAMPVK--AVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWS 299

Query: 445 GVYVLLSR 452
            +  +  R
Sbjct: 300 AMIKVYER 307



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 11/155 (7%)

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           +L  C     +  +  NS I  Y + G ++ AR+VF+ MP + + SWNS++ G+  + R 
Sbjct: 4   LLMPCRRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRP 63

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             A   FD++        N++++ G++S      MVSE R  FD M  E N+      + 
Sbjct: 64  REARYLFDKMP-----ERNTVSWNGLISGYVKNRMVSEARKAFDTM-PERNVV----SWT 113

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +V    + G + EA  L   MP K + V W  +L
Sbjct: 114 AMVRGYVQEGLVSEAETLFWQMPEK-NVVSWTVML 147



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 51/259 (19%)

Query: 14  QTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLI 70
           +  + ++F   + EG  +N  SL+S L+ C S++ L   +Q+HA+ +++   Q    + +
Sbjct: 311 EVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS---QFDSDVFV 367

Query: 71  YSRII-HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
            S +I  +    DL  A ++F +    +   WN++I   A+      +A+ +F  M   G
Sbjct: 368 ASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQH-GLVEEALQVFHEMCSSG 426

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189
            +  D  TF   L AC+Y      GK       K GL                       
Sbjct: 427 -MATDGVTFVGVLSACSY-----TGK------VKEGL----------------------- 451

Query: 190 NKVFDNMLERSLVS-----WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244
            ++F++M  + LV      +  M+D   + G  + A+ L ++M +  E D   + ++  A
Sbjct: 452 -EIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPV--EADAIIWGALLGA 508

Query: 245 CAGLATLSLGMWAHAYILR 263
           C     ++L   A   +L+
Sbjct: 509 CRTHMNMNLAEVAAKKLLQ 527


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 312/577 (54%), Gaps = 45/577 (7%)

Query: 40  LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSF 99
           L  C ++   ++IH  A +     Q    +  S I  ++ F     A  +F  +   +  
Sbjct: 125 LKACGTLVDGRKIHCWAFKLGF--QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 182

Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
           +WN +I    ++ +A  QA+ +   M  +G                              
Sbjct: 183 SWNAMISGLIQNGNA-AQALDVLDEMRLEG------------------------------ 211

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
              K   V+ V I    +  YA  G LD A+KVF+ +  + ++SWN +I  + Q G    
Sbjct: 212 --IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE 269

Query: 220 ALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           A+++++ M+   E  P+  T+ SI  A A +  L  GM  H  +++   H    DV V  
Sbjct: 270 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLH---LDVFVAT 326

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
            LID+Y KCG L  A  +F  +P+    +WN+II    +HG AE  LK F  ++ +E   
Sbjct: 327 CLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML-DEGVK 385

Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
           P+ +TFV +LSAC+H G V EG+  F +M  EY I P L+HYGC+VDLL RAG ++ A  
Sbjct: 386 PDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYD 444

Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457
            + +MP++PDA IW +LL AC + H ++ L +  + ++ E +     G YVLLS +YA+ 
Sbjct: 445 FIKDMPLQPDASIWGALLGAC-RIHGNIELGKFASDRLFEVDSKNV-GYYVLLSNIYANV 502

Query: 458 RRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKL 517
            +W  V  VR L  ++G+ K PG S+IE++     F+ G+ SHP+ K+IY  L ++  K+
Sbjct: 503 GKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKM 562

Query: 518 KSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
           KS GY PDYS   + D  +D K+  L  HSERLAIA GI++  P  PIR+FKNLRVC DC
Sbjct: 563 KSLGYIPDYS-FVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 621

Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           H  TK ISRI   EI+VRD  RFHHFKDG CSC DYW
Sbjct: 622 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 167/351 (47%), Gaps = 40/351 (11%)

Query: 66  KTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR 124
           +++ I +R+++ +A+  D+  +   F QI   + + WN++I A   +     +AI  F +
Sbjct: 49  QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFH-EAIGCFYQ 107

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++    + PD +TFP  LKAC  L     G++ H   FK G   +V++  SLIH Y+  G
Sbjct: 108 LLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFG 164

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244
              +A  +FD+M  R + SWN MI   +Q G    AL +   M+                
Sbjct: 165 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR---------------- 208

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
                            L     + VT V +    +DMY K G LD A +VFE +P +D+
Sbjct: 209 -----------------LEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDV 251

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            SWN++I G+A +G A  A++ +  +   +   PN  T+V +L A  H G + +G     
Sbjct: 252 ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHG 311

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +I   N+   +    CL+D+  + G + +A+ L   +P +  +V W +++
Sbjct: 312 RVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAII 360



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 47/293 (16%)

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           K  HA +   G V  ++I+  L++ YA+ G + L+   FD + ++ + +WN MI A+V  
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 95

Query: 215 GEFDSALKLFRRMQILFE--PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
           G F  A+  F ++ ++ E  PD YTF  +  AC    TL  G   H +  +        +
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFK---LGFQWN 149

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V V  SLI MY + G   IAR +F+ MP RD+ SWN++I G   +G A  AL   D + +
Sbjct: 150 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 209

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
            E    N +T V +L                          PV       VD+ A+ G +
Sbjct: 210 -EGIKMNFVTVVSIL--------------------------PV------FVDMYAKLGLL 236

Query: 393 DEALHLVSNMPMKPDAVIWRSLL-----DACCKKHASVVLSEEVAKQVIESEG 440
           D A  +   +P+K D + W +L+     +    +   V    E  K++I ++G
Sbjct: 237 DSAHKVFEIIPVK-DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 288



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 146/309 (47%), Gaps = 9/309 (2%)

Query: 25  RNEGSFNNH-SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           R+ GS+N   S L+ +    +++  L ++  + ++         L ++  +  +A    L
Sbjct: 179 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDM--YAKLGLL 236

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           D A +VF  I   +  +WNTLI   A++  A  +AI +++ M E   ++P++ T+   L 
Sbjct: 237 DSAHKVFEIIPVKDVISWNTLITGYAQNGLAS-EAIEVYKMMEECKEIIPNQGTWVSILP 295

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A A++ A  QG + H  + K  L  DV++   LI  Y  CG L  A  +F  + + S V+
Sbjct: 296 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 355

Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN +I      G  +  LKLF  M     +PD  TF S+ SAC+    +  G W    + 
Sbjct: 356 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 415

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
              ++ +   +     ++D+  + G L++A    + MP + D + W +++    +HG  E
Sbjct: 416 ---EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIE 472

Query: 322 AALKYFDRL 330
                 DRL
Sbjct: 473 LGKFASDRL 481


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 188/451 (41%), Positives = 276/451 (61%), Gaps = 16/451 (3%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           DV    +++   A+ G  D A ++FD M +R  V+WN MI  +V  G    AL+LF  M+
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319

Query: 229 ILFEPDG-YTFQSITSACAGLATLSLGMWAHAYILRHCDHS--LVTDVLVNNSLIDMYCK 285
                 G  T  S  +ACA L  L  G W H+     C HS  +   V +  +LIDMY K
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHS-----CAHSRGMRLSVTLGTALIDMYSK 374

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG++  A +VF+SM +R++ +W S + G A++G     L  F R+       PN +TFV 
Sbjct: 375 CGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRME-STGVEPNGVTFVV 433

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL  C+  G+V EGR  FD M + + I P LEHYGC+VDL  RAG +D+A++ ++ MP++
Sbjct: 434 VLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLE 493

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWNDV 463
           P   +W +LL+A  + H +V L +    ++  IES+       +VLLS +YA ++ W  V
Sbjct: 494 PHEGVWGALLNAS-RIHKNVELGKYAMDKLMAIESKN---DAAHVLLSNIYADSQNWKGV 549

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR +M  KGV K PGCS+IE+ G  HEFF G  +HP+ K+I   L  ++++L+ +GY 
Sbjct: 550 SNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYI 609

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
            + ++  + D  ++ K+ ++ LHSE+LAIA G++ L   M IR+ KNLRVC+DCH+ TK+
Sbjct: 610 AN-TKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKM 668

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++FN EI++RDR RFHHFKDG+CSC DYW
Sbjct: 669 ISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 317/608 (52%), Gaps = 83/608 (13%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +AS  D+  A +VF +I   N    N +IR+   +     + + +F  M    NV PD +
Sbjct: 84  YASLKDVASARKVFDEIPERNVIIINVMIRSYVNN-GFYGEGVKVFGTMC-GCNVRPDHY 141

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVS---------------------------- 168
           TFP  LKAC+       G++ H    K GL S                            
Sbjct: 142 TFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201

Query: 169 ---DVYINNSLIHFYASCGHLDLANKV--------------------------------- 192
              DV   NSL+  YA     D A +V                                 
Sbjct: 202 SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMY 261

Query: 193 ----FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAG 247
               F  M ++SLVSWNVMI  +++      A++L+ RM+   FEPD  +  S+  AC  
Sbjct: 262 VKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGD 321

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSW 307
            + LSLG   H YI R     L+ ++L+ N+LIDMY KCG L+ AR VFE+M  RD+ SW
Sbjct: 322 TSALSLGKKIHGYIERK---KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSW 378

Query: 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
            ++I  +   GR   A+  F +L  +    P+SI FV  L+AC+H G++ EGR  F +M 
Sbjct: 379 TAMISAYGFSGRGCDAVALFSKLQ-DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVL 427
           + Y ITP LEH  C+VDLL RAG + EA   + +M M+P+  +W +LL AC + H+   +
Sbjct: 438 DHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC-RVHSDTDI 496

Query: 428 SEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEID 487
               A ++ +      SG YVLLS +YA A RW +V  +R +M  KG+ K PG S++E++
Sbjct: 497 GLLAADKLFQL-APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555

Query: 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHS 547
            I H F  GD SHPQ+ +IY  LD++ +K+K  GY PD S++A+ D  ++ K++ L +HS
Sbjct: 556 RIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPD-SESALHDVEEEDKETHLAVHS 614

Query: 548 ERLAIALGILNLKP-----GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
           E+LAI   ++N K         IR+ KNLR+C DCH   KLIS+I + EII+RD  RFH 
Sbjct: 615 EKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHV 674

Query: 603 FKDGSCSC 610
           F+ G CSC
Sbjct: 675 FRFGVCSC 682



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H+ I    L  +  +   L+  YAS   +  A KVFD + ER+++  NVMI ++V  
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 215 GEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G +   +K+F  M      PD YTF  +  AC+   T+ +G   H    +     L + +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK---VGLSSTL 175

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V N L+ MY KCG L  AR V + M +RD+ SWNS+++G+A + R + AL+   R +  
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC-REMES 234

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
              S ++ T   +L A ++    +E   Y   M  +     ++  +  ++ +  +     
Sbjct: 235 VKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPV 291

Query: 394 EALHLVSNMP---MKPDAVIWRSLLDAC 418
           EA+ L S M     +PDAV   S+L AC
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPAC 319



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 22/297 (7%)

Query: 39  SLTECKSMSQLKQIH-AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPN 97
           +L  C+ M  +K  H A  + + LP    T           +  ++ Y   +F+++   +
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNT-----------TTENVMYVKDMFFKMGKKS 273

Query: 98  SFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156
             +WN +I    +  +A P +A+ L+ RM E     PD  +    L AC    A S GK+
Sbjct: 274 LVSWNVMIGVYMK--NAMPVEAVELYSRM-EADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216
            H +I ++ L+ ++ + N+LI  YA CG L+ A  VF+NM  R +VSW  MI A+   G 
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              A+ LF ++Q     PD   F +  +AC+    L  G      +    DH  +T  L 
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM---TDHYKITPRLE 447

Query: 276 NNS-LIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           + + ++D+  + G +  A +  + M  + +   W +++    +H   +  L   D+L
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 188/451 (41%), Positives = 276/451 (61%), Gaps = 16/451 (3%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           DV    +++   A+ G  D A ++FD M +R  V+WN MI  +V  G    AL+LF  M+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 229 ILFEPDG-YTFQSITSACAGLATLSLGMWAHAYILRHCDHS--LVTDVLVNNSLIDMYCK 285
                 G  T  S  +ACA L  L  G W H+     C HS  +   V +  +LIDMY K
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHS-----CAHSRGMRLSVTLGTALIDMYSK 381

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG++  A +VF+SM +R++ +W S + G A++G     L  F R+       PN +TFV 
Sbjct: 382 CGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRME-STGVEPNGVTFVV 440

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           VL  C+  G+V EGR  FD M + + I P LEHYGC+VDL  RAG +D+A++ ++ MP++
Sbjct: 441 VLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLE 500

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLLSRVYASARRWNDV 463
           P   +W +LL+A  + H +V L +    ++  IES+       +VLLS +YA ++ W  V
Sbjct: 501 PHEGVWGALLNAS-RIHKNVELGKYAMDKLMAIESKN---DAAHVLLSNIYADSQNWKGV 556

Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
             VR +M  KGV K PGCS+IE+ G  HEFF G  +HP+ K+I   L  ++++L+ +GY 
Sbjct: 557 SNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYI 616

Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
            + ++  + D  ++ K+ ++ LHSE+LAIA G++ L   M IR+ KNLRVC+DCH+ TK+
Sbjct: 617 AN-TKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKM 675

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IS++FN EI++RDR RFHHFKDG+CSC DYW
Sbjct: 676 ISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 328/585 (56%), Gaps = 17/585 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S+L +  E   ++  + +H+ A +  L +    L     I  ++   D++ A  +F  +
Sbjct: 216 ASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLT--GLISLYSKCGDVESARCLFDMM 273

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFS 152
           E P+   +N LI     SV+    + V LF  ++  G + P+  T   AL      F   
Sbjct: 274 EKPDLVAYNALISG--YSVNGMVGSSVNLFTELMTLG-LWPNSSTL-VALIPVHSPFGHD 329

Query: 153 QGKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
              Q  H  + K G  ++  ++ ++   +     ++ A K FD M E+++ SWN MI  +
Sbjct: 330 LLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGY 389

Query: 212 VQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
            Q G  + A+ LF +M ++   P+  T  S  SACA L  LSLG W H  I    +  L 
Sbjct: 390 AQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRII---TEEDLE 446

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +V V  +LIDMY KCGS+  AR++F +M  +++ SWN++I G+ LHG+   ALK +  +
Sbjct: 447 PNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDM 506

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
           + +    P S TF+ VL AC+H G+V EG   F  M ++Y I P +EH  C+VDLL RAG
Sbjct: 507 L-DAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAG 565

Query: 391 NIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
            + EA  L+S  P       +W +LL AC   H    L++  ++++ E +    SG YVL
Sbjct: 566 QLKEAFELISEFPKSAVGPGVWGALLGAC-MVHKDSDLAKLASQKLFELDPE-NSGYYVL 623

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           LS ++ S +++++  +VR+    + + K PG + IEI    H F AGD +HPQ++ IY +
Sbjct: 624 LSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSY 683

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L+ +  K+   GY P+ ++AA+ D  ++ K+  +++HSE+LAIA G+L+ +PG  IR+ K
Sbjct: 684 LEKLTAKMIEAGYRPE-TEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIK 742

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLRVC DCH  TK IS++    I+VRD +RFHHF+DG CSC DYW
Sbjct: 743 NLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 173/334 (51%), Gaps = 12/334 (3%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D+A +VF  + +P++  WNTL+   + S     +A+  F RM+  G+V PD  T    L
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGS-----EAVESFARMVCDGSVRPDATTLASVL 219

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
            A A +   + G+  H+   K GL    ++   LI  Y+ CG ++ A  +FD M +  LV
Sbjct: 220 PAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLV 279

Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
           ++N +I  +   G   S++ LF  +  L   P+  T  ++    +      L    H ++
Sbjct: 280 AYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFV 339

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
           L+        +  V+ ++  ++C+   ++ AR+ F++MP++ + SWN++I G+A +G  E
Sbjct: 340 LK---SGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTE 396

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            A+  F+++ V+ +  PN IT    LSAC   G +S G+ +   +I E ++ P +     
Sbjct: 397 MAVALFEQM-VKLNVRPNPITISSTLSACAQLGALSLGK-WLHRIITEEDLEPNVYVMTA 454

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L+D+ A+ G+I EA  + + M  K + V W +++
Sbjct: 455 LIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMI 487



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 164/397 (41%), Gaps = 74/397 (18%)

Query: 72  SRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGN 130
           S ++ +AS  A   +  R+F     P+ F  N L+R+       +P+  +LF        
Sbjct: 56  SLLLRYASLRAPTGHLLRLFRGFPRPDRFLRNALLRSLP---SLRPR--LLFP------- 103

Query: 131 VLPDKHTFPFALKACAYL-------FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
             PD  +F FA  + A L        + S  +  HA     G  +D ++ ++L   Y   
Sbjct: 104 -CPDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVL 162

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI--LFEPDGYTFQSI 241
             +D A KVFD +     V WN ++           A++ F RM       PD  T  S+
Sbjct: 163 SRVDHARKVFDTVPSPDTVLWNTLLAGL----SGSEAVESFARMVCDGSVRPDATTLASV 218

Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
             A A +A +++G   H++    C  +    VL    LI +Y KCG ++ AR +F+ M K
Sbjct: 219 LPAAAEVADVTMGRCVHSFA-EKCGLAEHEHVLTG--LISLYSKCGDVESARCLFDMMEK 275

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG-----------VLSAC 350
            DL ++N++I G++++G   +++  F  L+      PNS T V            +L+ C
Sbjct: 276 PDLVAYNALISGYSVNGMVGSSVNLFTELMT-LGLWPNSSTLVALIPVHSPFGHDLLAQC 334

Query: 351 NHRGMVSEG------------------------RDYFDVMINEYNITPVLEHYGCLVDLL 386
            H  ++  G                        R  FD M  +      +E +  ++   
Sbjct: 335 LHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEK-----TMESWNAMISGY 389

Query: 387 ARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCK 420
           A+ G  + A+ L   M    ++P+ +   S L AC +
Sbjct: 390 AQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQ 426


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 213/613 (34%), Positives = 331/613 (53%), Gaps = 56/613 (9%)

Query: 9   GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL-RTALPQQ 64
           G   PQ  S  +F   + EG      +++S L     +S L   KQIH   + R  L   
Sbjct: 132 GNSCPQ-ESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLG-- 188

Query: 65  HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
              + I++ +   +A   +++ A  +F  +   N  +WN +I   A+  + +P+  +   
Sbjct: 189 --NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK--NGQPEKCIGLL 244

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
             +     +PD+ T                                    +++I  Y  C
Sbjct: 245 HQMRLSGHMPDQVTM-----------------------------------STIIAAYCQC 269

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           G +D A +VF    E+ +V W  M+  + + G  + AL LF  M +   EPD YT  S+ 
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVV 329

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           S+CA LA+L  G   H    +     L  ++LV+++LIDMY KCG +D AR VF  MP R
Sbjct: 330 SSCAKLASLHHGQAVHG---KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTR 386

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           ++ SWN++I+G A +G  + AL+ F+ ++ ++ F P+++TF+G+LSAC H   + +G++Y
Sbjct: 387 NVVSWNAMIVGCAQNGHDKDALELFENML-QQKFKPDNVTFIGILSACLHCNWIEQGQEY 445

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           FD + N++ +TP L+HY C+V+LL R G I++A+ L+ NM   PD +IW +LL  C  K 
Sbjct: 446 FDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTK- 504

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
             +V +E  A+ + E +  I +  Y++LS +YAS  RW DV  VR LM  K V K  G S
Sbjct: 505 GDIVNAEVAARHLFELDPTI-AVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
            IEID   H F + D +HP+++ IY  L+++  KL+  G+TP+ +   + D  +D K  S
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPN-TNLVLHDVGEDEKFKS 622

Query: 543 LRLHSERLAIALGILNLKPGM-PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +  HSE+LA+A G++    G+ PIR+ KN+R+C DCHE  K  SRI   +II+RD  RFH
Sbjct: 623 ICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFH 682

Query: 602 HFKDGSCSCMDYW 614
           HF  G CSC D W
Sbjct: 683 HFSTGKCSCNDNW 695



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 191/419 (45%), Gaps = 89/419 (21%)

Query: 42  ECKSMSQLKQIHAQALRTALPQ---QHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           EC   +++ Q  A+ L++ +     Q     ++++++H +A F  L  A  +F ++   +
Sbjct: 31  ECVRTNEINQ--AKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRD 88

Query: 98  SFTWNTLIRACARS---------VDAKP---------------------QAIVLFQRMIE 127
            F+WN L+ A A+S          D  P                     +++ LF+RM  
Sbjct: 89  IFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQR 148

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +G   P ++T    L A A L     GKQ H  I  R  + +V+I N+L   YA CG ++
Sbjct: 149 EG-FEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACA 246
            A  +FD + +++LVSWN+MI  + + G+ +  + L  +M++    PD  T  +I +A  
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA-- 265

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
                                               YC+CG +D AR+VF    ++D+  
Sbjct: 266 ------------------------------------YCQCGRVDEARRVFSEFKEKDIVC 289

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN-----HRGMVSEGRD 361
           W ++++G+A +GR E AL  F+ +++E    P+S T   V+S+C      H G    G+ 
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHGKS 348

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
               + N   ++        L+D+ ++ G ID+A  + + MP + + V W +++  C +
Sbjct: 349 ILAGLNNNLLVSSA------LIDMYSKCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQ 400


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 277/491 (56%), Gaps = 21/491 (4%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD  +  FALKA A         Q HA + + G+ +DV +  +L+  YA CG L  A KV
Sbjct: 102 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 161

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-------EPDGYTFQSITSAC 245
           FD M  R + +WN ++    Q  E + AL LF R+   F       EP+  T  +  SAC
Sbjct: 162 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSAC 221

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-- 303
           A +  L  GM+ H +  R     L  +V V NSLIDMY KCGSL  A  VF S+   D  
Sbjct: 222 AQIGLLKDGMYVHEFAKRF---GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRT 278

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           L S+N+ I   ++HG    AL+ FD +       P+ +T++ VL  CNH G+V +G   F
Sbjct: 279 LVSYNAAIQAHSMHGHGGDALRLFDEMPTR--IEPDGVTYLAVLCGCNHSGLVDDGLRVF 336

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
           + M     + P ++HYG +VDLL RAG + EA   V +MP   D V+W++LL A  K H 
Sbjct: 337 NSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAA-KMHG 391

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
            V L+E  A ++ E  G    G YVLLS VYAS  RW DVG VR  M    V K PG S 
Sbjct: 392 VVELAELAANKLAEL-GSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSY 450

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
            EIDG+ H+F  GD  HP+ ++IY  L+ I  ++   GY P+ S   + D  ++ KQ +L
Sbjct: 451 TEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV-LHDIGEEEKQYAL 509

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
             HSE+LAIA G++   PG  +RV KNLR+C DCH V KLIS+ +   I++RDRARFH F
Sbjct: 510 CYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRF 569

Query: 604 KDGSCSCMDYW 614
           +DG CSC DYW
Sbjct: 570 EDGQCSCRDYW 580



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 37  LSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP 96
           L +   C       Q+HA  LR  +    +  L+ + +  +A   DL  A +VF ++   
Sbjct: 111 LKASARCSDAHTTVQLHALVLRLGVAADVR--LLTTLLDSYAKCGDLASARKVFDEMTVR 168

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-----TFPFALKACAYLFAF 151
           +  TWN+L+   A+  +    A+ LF R+      LP +      T   AL ACA +   
Sbjct: 169 DVATWNSLLAGLAQGTEPN-LALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLL 227

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMID 209
             G   H    + GL  +V + NSLI  Y+ CG L  A  VF ++   +R+LVS+N  I 
Sbjct: 228 KDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQ 287

Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDH 267
           A    G    AL+LF  M    EPDG T+ ++   C  +GL    L ++    +  +  H
Sbjct: 288 AHSMHGHGGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKH 347

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAA 323
                     +++D+  + G L  A     SMP   D+  W +++    +HG  E A
Sbjct: 348 Y--------GTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELA 396


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 219/644 (34%), Positives = 336/644 (52%), Gaps = 89/644 (13%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFA-SFAD-LDYAFRVFYQIENPNSFT 100
           CK++  L QIH   +++ +     +  I   I+H A S +D L YA R+      P++F 
Sbjct: 182 CKNLRALTQIHGFFIKSGV--DTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFM 239

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           +NTL+R  + S D    ++ +F  M+ +G + PD  +F F +KA A   +   G Q H  
Sbjct: 240 FNTLVRGYSES-DEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQ 298

Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV------------------ 202
             K GL S +++  +LI  Y  CG +  A KVFD M + +LV                  
Sbjct: 299 ALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGA 358

Query: 203 -------------SWNVMIDAFVQFGEFDSALKLFRRM---------------------- 227
                        SWNVM+  +++ GE + A ++F  M                      
Sbjct: 359 REIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFN 418

Query: 228 ----------QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
                     +    P+  +   + SAC+       G   H ++ +     +V+   VNN
Sbjct: 419 ESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVS---VNN 475

Query: 278 SLIDMYCKCGSLDIARQVFESM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
           +LIDMY +CG++ +AR VFE M  KR + SW S+I G A+HG  E A++ F+ +  E   
Sbjct: 476 ALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMT-ESGV 534

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ I+F+ +L AC+H G++ EG  YF  M   Y+I P +EHYGC+VDL  R+G + +A 
Sbjct: 535 MPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAY 594

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             +  MP+ P A++WR+LL AC   H ++ L+E+V +++ E +    SG  VLLS VYA+
Sbjct: 595 SFICQMPIPPTAIVWRTLLGAC-SSHGNIELAEQVKQRLNELDPN-NSGDLVLLSNVYAT 652

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT-------SHPQTKQIYGF 509
           A +W DV  +RK M  + + K    S +E+    ++F A +        +H + K+I   
Sbjct: 653 AGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEI--I 710

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           L L DE     GY P+ + +A+ D  ++ K+  +  HSE+LA+A  +  L  G  IR+ K
Sbjct: 711 LRLRDEA----GYAPEVA-SALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVK 765

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDY 613
           NLR+C+DCH V KL SR++ VEI++RDR RFH FKDGSCSC DY
Sbjct: 766 NLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 213/590 (36%), Positives = 326/590 (55%), Gaps = 32/590 (5%)

Query: 33  HSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFY 91
           +++LL SL   +++   +QIHA  +R  L        I + I++ +     L  A RVF 
Sbjct: 187 YTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTS---IETGIVNMYVKCGWLVGAKRVFD 243

Query: 92  QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
           Q+          L+    ++  A+  A+ LF  ++ +G V  D   F   LKACA L   
Sbjct: 244 QMAVKKPVACTGLMVGYTQAGRAR-DALKLFVDLVTEG-VEWDSFVFSVVLKACASLEEL 301

Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           + GKQ HA + K GL S+V +   L+ FY  C   + A + F  + E + VSW+ +I  +
Sbjct: 302 NLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGY 361

Query: 212 VQFGEFDSALKLFRRMQ-----ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
            Q  +F+ A+K F+ ++     IL   + +T+ SI  AC+ LA  ++G   HA  ++   
Sbjct: 362 CQMSQFEEAVKTFKSLRSKNASIL---NSFTYTSIFQACSVLADCNIGGQVHADAIKR-- 416

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
            SL+      ++LI MY KCG LD A +VFESM   D+ +W + I G A +G A  AL+ 
Sbjct: 417 -SLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRL 475

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F+++V      PNS+TF+ VL+AC+H G+V +G+   D M+ +YN+ P ++HY C++D+ 
Sbjct: 476 FEKMV-SCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIY 534

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446
           AR+G +DEAL  + NMP +PDA+ W+  L  C   H ++ L E   +++ + +    +G 
Sbjct: 535 ARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCW-THKNLELGEIAGEELRQLDPEDTAG- 592

Query: 447 YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
           YVL   +Y  A +W +   + KLM ++ + KE  CS I+  G  H F  GD  HPQT++I
Sbjct: 593 YVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEI 652

Query: 507 YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL--KPGMP 564
           Y  L   D  ++      D  Q  M +     ++  L  HSERLAIA G++++      P
Sbjct: 653 YEKLKEFDGFMEG-----DMFQCNMTE-----RREQLLDHSERLAIAFGLISVHGNAPAP 702

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I+VFKNLR C DCHE  K +S +   EI++RD  RFHHFK+G CSC DYW
Sbjct: 703 IKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 197/430 (45%), Gaps = 45/430 (10%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVF 90
           ++  L  +  E +S+S  + +H    R  +  ++ ++L+ + ++  +     L+ A ++F
Sbjct: 85  SYQCLFEACRELRSLSHGRLLHD---RMRMGIENPSVLLQNCVLQMYCECRSLEDADKLF 141

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            ++   N+ +  T+I A A       +A+ LF  M+  G+  P    +   LK+     A
Sbjct: 142 DEMSELNAVSRTTMISAYAEQ-GILDKAVGLFSGMLASGDK-PPSSMYTTLLKSLVNPRA 199

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G+Q HAH+ + GL S+  I   +++ Y  CG L  A +VFD M  +  V+   ++  
Sbjct: 200 LDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVG 259

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           + Q G    ALKLF  +     E D + F  +  ACA L  L+LG   HA + +     L
Sbjct: 260 YTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAK---LGL 316

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
            ++V V   L+D Y KC S + A + F+ + + +  SW++II G+    + E A+K F  
Sbjct: 317 ESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKS 376

Query: 330 LVVEESFSPNSITFV------GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY---G 380
           L  + +   NS T+        VL+ CN  G V        ++ ++Y  + ++  Y   G
Sbjct: 377 LRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCG 436

Query: 381 CLVDL---------------------LARAGNIDEALHLVSNM---PMKPDAVIWRSLLD 416
           CL D                       A  GN  EAL L   M    MKP++V + ++L 
Sbjct: 437 CLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLT 496

Query: 417 ACCKKHASVV 426
           AC   HA +V
Sbjct: 497 AC--SHAGLV 504



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           Y++Q +  AC  L +LS G   H  +    ++     VL+ N ++ MYC+C SL+ A ++
Sbjct: 84  YSYQCLFEACRELRSLSHGRLLHDRMRMGIEN---PSVLLQNCVLQMYCECRSLEDADKL 140

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F+ M + +  S  ++I  +A  G  + A+  F  ++      P+S+    + S  N R +
Sbjct: 141 FDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRAL 200


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 324/590 (54%), Gaps = 19/590 (3%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           ++N    LL S    +S  +  Q+H   +++ L       L+ + +I+F S + L +  R
Sbjct: 14  NYNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSL---IPLVANNLINFYSKSQLPFDSR 70

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
             ++ ++P   +          + +  P   + F + +  GN+ PD H  P A K+CA L
Sbjct: 71  RAFE-DSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAIL 129

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G+  H    K G  +DV++ +SL+  YA CG +  A K+FD M +R++V+W+ M+
Sbjct: 130 SRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMM 189

Query: 209 DAFVQFGEFDSALKLFRRMQILFEP---DGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
             + Q GE + AL LF+  + LFE    + Y+F S+ S CA    L LG   H   ++  
Sbjct: 190 YGYAQMGENEEALWLFK--EALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKS- 246

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
             S  +   V +SL+ +Y KCG  + A QVF  +P ++L  WN+++  +A H   +  ++
Sbjct: 247 --SFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIE 304

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F R+ +     PN ITF+ VL+AC+H G+V EGR YFD M  E  I P  +HY  LVD+
Sbjct: 305 LFKRMKLS-GMKPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDM 362

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG + EAL +++NMP+ P   +W +LL +C   H +  L+   A +V E  G + SG
Sbjct: 363 LGRAGRLQEALEVITNMPIDPTESVWGALLTSC-TVHKNTELAAFAADKVFEL-GPVSSG 420

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505
           +++ LS  YA+  R+ D    RKL+ D+G  KE G S +E     H F AG+  H ++K+
Sbjct: 421 MHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKE 480

Query: 506 IYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGMP 564
           IY  L  + E+++  GY  D S   ++ E+D D K  ++R HSERLAIA G++      P
Sbjct: 481 IYEKLAELGEEMEKAGYIADTSY--VLREVDGDEKNQTIRYHSERLAIAFGLITFPADRP 538

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCH   K +S      IIVRD  RFH F+DG CSC DYW
Sbjct: 539 IRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 204/534 (38%), Positives = 295/534 (55%), Gaps = 13/534 (2%)

Query: 82   DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
            +L+ A  VF ++++ +  +W  ++ A A + D K +   LF+RM  +G V+PDK T    
Sbjct: 587  ELEQARSVFDEMDHGDVVSWTAMVSATAENRDFK-EVHHLFRRMQLEG-VIPDKFTLATT 644

Query: 142  LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
            L  C        GK  HA + + GL +D+ + N+L++ Y++CG    A   F+ M  R L
Sbjct: 645  LDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 202  VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAY 260
            VSWN+M  A+ Q G    A+ LFR MQ+   +PD  TF +  +   G A +S G   H  
Sbjct: 705  VSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGL 764

Query: 261  ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
                 +  L +DV V   L+ +Y KCG LD A  +F    +  +   N+II   A HG +
Sbjct: 765  A---AESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFS 821

Query: 321  EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
            E A+K F ++  +E   P+  T V ++SAC H GMV EG   F  M   + I+P LEHY 
Sbjct: 822  EEAVKMFWKMQ-QEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYA 880

Query: 381  CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
            C VDLL RAG ++ A  ++  MP + + ++W SLL   CK      L E  A++++E + 
Sbjct: 881  CFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL-GTCKLQGDAELGERCAQRILELDP 939

Query: 441  GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
               S  +V+LS +Y +  +W D  + RK + D+ V   PG S +EI    HEF AGD SH
Sbjct: 940  H-NSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSH 998

Query: 501  PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
            PQT +IY  LD ++  ++  GY  D      +D  D+ K+ +L  HSER+AIA G++   
Sbjct: 999  PQTDEIYVVLDKLELLMRRAGYEADKG----LDAEDELKEKALGYHSERIAIAFGLIATP 1054

Query: 561  PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            P   +++ KNLRVC DCH  TK IS I   EIIVRD  RFHHF +G+CSC D W
Sbjct: 1055 PDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 193/398 (48%), Gaps = 21/398 (5%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFR 88
              +++LL S  +   +++ K+ H + +  A  +QH  L + + +I+ +     L+ A  
Sbjct: 25  LQEYTALLQSCVDSNDLAKGKRAH-ELIANAGLEQH--LFLGNCLINMYVRCGSLEEAHA 81

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++E  N  +W  LI A A+S  A  +A  LF+ M+ + +  P+ +T    L ACA  
Sbjct: 82  IFSKMEERNVVSWTALISANAQS-GAFARAFALFRTMLLESSAAPNSYTLVAMLNACANS 140

Query: 149 FAFSQGKQAHAHIFKRGL----VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
              + G+  HA I++ GL     +   + N++I+ YA CG  + A  VF  + E+ +VSW
Sbjct: 141 RDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSW 200

Query: 205 NVMIDAFVQFGEF-DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
             M  A+ Q   F   AL++FR M +    P+  TF +   AC    +L  G W H+  L
Sbjct: 201 TAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC---TSLRDGTWLHS--L 255

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGR 319
            H +  L  D L  N+LI+MY KCG  + A  VF++M  R   DL SWN++I      GR
Sbjct: 256 LH-EAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGR 314

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
              A+  F RL + E   PNS+T + +L+A    G+       F   I E      +   
Sbjct: 315 HGDAMAIFRRLRL-EGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVG 373

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
             ++ + A+ G    A  +   +  K D + W ++L A
Sbjct: 374 NAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGA 411



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 200/463 (43%), Gaps = 47/463 (10%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQAL---RTALPQQHKTLLIYSRIIHFASFADLDY 85
           N  S ++ L  C +   L   ++IH+  L   R  +     T+L+      +     +  
Sbjct: 436 NKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVS----MYGKCGSIAE 491

Query: 86  AFRVFYQIENPNS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           A  VF ++  P+    TWN ++ A A++ D   +A      M+ QG VLPD  +F   L 
Sbjct: 492 AELVFKEMPLPSRSLVTWNVMLGAYAQN-DRSKEAFGALMEML-QGGVLPDALSFTSVLS 549

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           +C   +   + +     I + G  S   +  +LI  +  C  L+ A  VFD M    +VS
Sbjct: 550 SC---YCSQEAQVLRMCILESGYRS-ACLETALISMHGRCRELEQARSVFDEMDHGDVVS 605

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           W  M+ A  +  +F     LFRRMQ+    PD +T  +    C    TL LG   HA + 
Sbjct: 606 WTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACV- 664

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
              +  L  D+ V N+L++MY  CG    A   FE+M  RDL SWN +   +A  G A+ 
Sbjct: 665 --TEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           A+  F  + + E   P+ +TF   L+      +VS+G+  F  +  E  +   +     L
Sbjct: 723 AVLLFRHMQL-EGVKPDKLTFSTTLNVSGGSALVSDGK-LFHGLAAESGLDSDVSVATGL 780

Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWR-SLLDACCKKHASVVLSEEVAKQVIE-SEG 440
           V L A+ G +DEA+ L         A  W   LL+A     A    SEE  K   +  + 
Sbjct: 781 VKLYAKCGKLDEAISLFRG------ACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQE 834

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
           G+   V  L+S + A        G+V           E GCSS
Sbjct: 835 GVRPDVATLVSIISACGH----AGMV-----------EEGCSS 862



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 149/292 (51%), Gaps = 15/292 (5%)

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D   +   L++C      ++GK+AH  I   GL   +++ N LI+ Y  CG L+ A+ +F
Sbjct: 24  DLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE----PDGYTFQSITSACAGLA 249
             M ER++VSW  +I A  Q G F  A  LFR M  L E    P+ YT  ++ +ACA   
Sbjct: 84  SKMEERNVVSWTALISANAQSGAFARAFALFRTM--LLESSAAPNSYTLVAMLNACANSR 141

Query: 250 TLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
            L++G   HA I     +    T  LV N++I+MY KCGS + A  VF ++P++D+ SW 
Sbjct: 142 DLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWT 201

Query: 309 SIILGFALHGR-AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367
           ++   +A   R    AL+ F  +++ +  +PN ITF+  L AC     + +G  +   ++
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLL-QPLAPNVITFITALGACTS---LRDG-TWLHSLL 256

Query: 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP--DAVIWRSLLDA 417
           +E  +         L+++  + G+ + A  +   M  +   D V W +++ A
Sbjct: 257 HEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISA 308



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 182/397 (45%), Gaps = 18/397 (4%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKT--LLIYSRIIHFASFADLDYA 86
           N  +L++ L  C +   L   + IHA      L ++  T  L+  + I  +A     + A
Sbjct: 126 NSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDA 185

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
             VF  I   +  +W  +  A A+     P A+ +F+ M+ Q  + P+  TF  AL AC 
Sbjct: 186 IAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQ-PLAPNVITFITALGACT 244

Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVS 203
            L     G   H+ + + GL  D    N+LI+ Y  CG  + A  VF  M  R    LVS
Sbjct: 245 SL---RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVS 301

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
           WN MI A V+ G    A+ +FRR+++    P+  T  +I +A A  + +  G  A  +  
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA-SGVDFGA-ARKFHG 359

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAE 321
           R  +   + DV+V N++I MY KCG    A  VF  +  K D+ SWN+++          
Sbjct: 360 RIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFG 419

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             +  F  +++     PN ++F+ +L+AC++   +  GR    +++              
Sbjct: 420 KVVNTFHHMLLA-GIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATM 478

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVI-WRSLLDA 417
           LV +  + G+I EA  +   MP+   +++ W  +L A
Sbjct: 479 LVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 21/330 (6%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFY 91
           N  + +++L  C S+     +H+      L      L   + I  +    D + A+ VF 
Sbjct: 232 NVITFITALGACTSLRDGTWLHSLLHEAGLG--FDPLAGNALINMYGKCGDWEGAYGVFK 289

Query: 92  QIENPNSF---TWNTLIRACARSVDAK--PQAIVLFQRMIEQGNVLPDKHTFPFALKA-C 145
            + +       +WN +I A   SV+A     A+ +F+R+  +G + P+  T    L A  
Sbjct: 290 AMASRQELDLVSWNAMISA---SVEAGRHGDAMAIFRRLRLEG-MRPNSVTLITILNALA 345

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVSW 204
           A    F   ++ H  I++ G + DV + N++I  YA CG    A  VF  +  +  ++SW
Sbjct: 346 ASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISW 405

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYIL- 262
           N M+ A      F   +  F  M +   +P+  +F +I +AC+    L  G   H+ IL 
Sbjct: 406 NTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILT 465

Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM--PKRDLTSWNSIILGFALHGRA 320
           R  D+    +  V   L+ MY KCGS+  A  VF+ M  P R L +WN ++  +A + R+
Sbjct: 466 RRRDY---VESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRS 522

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           + A      + ++    P++++F  VLS+C
Sbjct: 523 KEAFGALMEM-LQGGVLPDALSFTSVLSSC 551


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 189/453 (41%), Positives = 278/453 (61%), Gaps = 10/453 (2%)

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   DV    +++      G  D A  +FD M ER+LVSWN M+  +V+   F  AL++F
Sbjct: 160 GGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVF 219

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M+    + + +   +   AC G   L+ G   H ++ +     +  D  +  +++DMY
Sbjct: 220 DEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQS---GIQMDEKLATAVVDMY 276

Query: 284 CKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           CKCG ++ A +VFE++P   + LT+WN +I GFA+HGR + ALK F R+   E  +P+ +
Sbjct: 277 CKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRME-REGVAPDDV 335

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T V VL+AC H GM+SEGR YF+ +   Y I P +EHYGC+VDL  RAG ++EA  ++ +
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MPM+PD  +  +L  A  K H  V L E +  +VIE +    SG YVLL+ + A+A RW 
Sbjct: 396 MPMEPDVGVLGALFGAS-KIHGDVDLGEAIGWRVIELDPQ-NSGRYVLLANLLATAGRWE 453

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
           DV  VR+LM ++ V+KE G S IE+ G   EF  G   HP+ +++Y     +  K+++ G
Sbjct: 454 DVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEG 513

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           Y PD ++  +    ++ K++ L  HSE+LAIA G+L+ +PG  +R+ KNLRVC+DCHE T
Sbjct: 514 YVPD-TRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEAT 572

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K +SR+F  +I+VRDR RFHHFKDG CSC DYW
Sbjct: 573 KFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 334/602 (55%), Gaps = 42/602 (6%)

Query: 23  NNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFA 81
           N+R E    + ++L+S   +   MS+ +++  +     +P   + ++ ++ ++  +A   
Sbjct: 186 NSRTEWDAISWNALMSGYVQWGKMSEARELFDR-----MPG--RDVVSWNIMVSGYARRG 238

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG----NVLPDKHT 137
           D+  A R+F      + FTW  ++   A++             M+E+     + +P+++ 
Sbjct: 239 DMVEARRLFDAAPVRDVFTWTAVVSGYAQN------------GMLEEARRVFDAMPERNA 286

Query: 138 FPFALKACAYL--FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
             +     AY+      + K+    +F      +V   N+++  YA  G L+ A  VFD 
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLG 254
           M ++  VSW  M+ A+ Q G  +  L+LF  M    E  +   F  + S CA +A L  G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
           M  H  ++R           V N+L+ MY KCG+++ AR  FE M +RD+ SWN++I G+
Sbjct: 403 MQLHGRLIRA---GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGY 459

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HG  + AL+ FD ++   S  P+ IT VGVL+AC+H G+V +G  YF  M +++ +T 
Sbjct: 460 ARHGFGKEALEIFD-MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             EHY C++DLL RAG + EA  L+ +MP +PD+ +W +LL A  + H +  L    A++
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS-RIHRNPELGRSAAEK 577

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           + E E    +G+YVLLS +YAS+ +W D   +R +M ++GV K PG S IE+    H F 
Sbjct: 578 IFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMV--DELDDGKQSSLRLHSERLAI 552
           AGD  HP+ ++IY FL+ +D ++K  GY    S   MV  D  ++ K+  L+ HSE+LA+
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRMKKAGYV---SATDMVLHDVEEEEKEHMLKYHSEKLAV 693

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GILN+ PG PIRV KNLRVC DCH   K IS I    I++RD  RFHHF+ GSCSC D
Sbjct: 694 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGD 753

Query: 613 YW 614
           YW
Sbjct: 754 YW 755



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 169/384 (44%), Gaps = 67/384 (17%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           A+ L  A+P++  T    + +  +++   L  A  +F  I  P+++++NTL+ A A S  
Sbjct: 57  AERLFAAMPRR-STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVS-S 114

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
           +   A  LF  M      + D  T+   + + A     S  +    H F      D    
Sbjct: 115 SLADARGLFDEM-----PVRDSVTYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSW 165

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           N ++  Y   G ++ A  +F++  E   +SWN ++  +VQ+G+   A +LF RM      
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP----- 220

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
                                                 DV+  N ++  Y + G +  AR
Sbjct: 221 ------------------------------------GRDVVSWNIMVSGYARRGDMVEAR 244

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F++ P RD+ +W +++ G+A +G  E A + FD +        N++++  +++A   R
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-----ERNAVSWNAMVAAYIQR 299

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
            M+ E ++ F++M    N+      +  ++   A+AG ++EA  +   MP K DAV W +
Sbjct: 300 RMMDEAKELFNMMPCR-NVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAA 353

Query: 414 LLDACCKKHASVVLSEEVAKQVIE 437
           +L A    ++    SEE  +  IE
Sbjct: 354 MLAA----YSQGGCSEETLQLFIE 373



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 21/250 (8%)

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L  +V  +N  I  +   G +  A ++F  M  RS  ++N M+  +   G    A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 226 RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
            +     PD Y++ ++  A A  ++L     A A  L   D   V D +  N +I  +  
Sbjct: 94  AIP---RPDNYSYNTLLHALAVSSSL-----ADARGL--FDEMPVRDSVTYNVMISSHAN 143

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
            G + +AR  F+  P++D  SWN ++  +  +GR E A   F+     ++ S N++    
Sbjct: 144 HGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNAL---- 199

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            +S     G +SE R+ FD M     ++     +  +V   AR G++ EA  L    P++
Sbjct: 200 -MSGYVQWGKMSEARELFDRMPGRDVVS-----WNIMVSGYARRGDMVEARRLFDAAPVR 253

Query: 406 PDAVIWRSLL 415
            D   W +++
Sbjct: 254 -DVFTWTAVV 262


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 319/568 (56%), Gaps = 24/568 (4%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC---A 109
           A+ L   +P   K +  ++ ++H F S   ++ A  +F ++ N N  +W ++I       
Sbjct: 162 AECLFRVMPT--KDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNG 219

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           RS     +A+V+F +M+   +      T   AL ACA +     G Q H  I K G   +
Sbjct: 220 RSF----EALVVFHKML--ASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFN 273

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR---R 226
            YI+ SLI FYA+C  +D A+ +F++ + R++V W  ++  +        AL++F+   R
Sbjct: 274 EYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMR 333

Query: 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
           M +L  P+  +  S  ++C GL  +  G   HA   +     L +D+ V+NSL+ MY KC
Sbjct: 334 MSVL--PNQSSLTSALNSCCGLEAVDRGREVHAVAHKL---GLESDIFVSNSLVVMYTKC 388

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G ++    VF  M ++++ SWNSII+G A HG    AL  F +++      P+ IT  G+
Sbjct: 389 GHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMI-RTRVDPDEITLAGL 447

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           LSAC H GM+++GR +F      + I    EHY  +VDLL R G ++EA  L+  MP K 
Sbjct: 448 LSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKA 507

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
           + ++W +LL +    H++V ++E  AK V++ +   CS  Y LLS +YAS  +W +V  +
Sbjct: 508 NYMVWLALLSSSIN-HSNVHVAERAAKCVLDLQPN-CSAAYTLLSNLYASTGKWTEVSKI 565

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
           RK M D+G+ K+PG S I I GI H F +GD SHP +++IY  L+ +  KLK  GY PD 
Sbjct: 566 RKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPD- 624

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
            + +  D   + K+  L  HSERLAI  G+++   G  I V KNLR+C DCH   KL S+
Sbjct: 625 PKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTSK 684

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +   EI+VRD +RFHHF +G+CSC DYW
Sbjct: 685 VVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 167/354 (47%), Gaps = 21/354 (5%)

Query: 70  IYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
           +Y+ +I  +A    L+ A ++FY++   +  +WN++++ C +  D    A  +F +M E+
Sbjct: 83  LYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDL-TMACNMFDKMSER 141

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
             V     ++   +     L  F + + A   +F+     DV   NS++H + S G ++ 
Sbjct: 142 NVV-----SWTTIING---LLEFGRVEVAEC-LFRVMPTKDVTAWNSMVHGFFSNGRVED 192

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248
           A ++F+ M  R+++SW  +I      G    AL +F +M   F+    T     +ACA +
Sbjct: 193 AIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANI 252

Query: 249 ATLSLGMWAHAYILR--HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
            T  +G+  H  I++  +C +  ++      SLI  Y  C  +D A  +F     R++  
Sbjct: 253 CTPFIGVQIHGLIVKTGYCFNEYISA-----SLISFYANCKLIDNASSIFNDNVSRNVVV 307

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           W +++ G+ L+ R   AL+ F  + +  S  PN  +    L++C     V  GR+   V 
Sbjct: 308 WTALLTGYGLNCRHTDALQVFKGM-MRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVA 366

Query: 367 INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            ++  +   +     LV +  + G+I++ + + + M  K + V W S++  C +
Sbjct: 367 -HKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRK-NVVSWNSIIVGCAQ 418



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 15/201 (7%)

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE 232
           +N L+ F+   G +D A  +F+ M    +  + +MI  +   G  + ALKLF  M +   
Sbjct: 53  SNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPV--- 109

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292
            D  ++ S+   C     L++   A     +  + ++V+   + N L++     G +++A
Sbjct: 110 KDLISWNSMLKGCLKCGDLTM---ACNMFDKMSERNVVSWTTIINGLLEF----GRVEVA 162

Query: 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352
             +F  MP +D+T+WNS++ GF  +GR E A++ F+++      + N I++  V+   +H
Sbjct: 163 ECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMP-----NRNVISWTSVIGGLDH 217

Query: 353 RGMVSEGRDYFDVMINEYNIT 373
            G   E    F  M+  +  T
Sbjct: 218 NGRSFEALVVFHKMLASFKAT 238


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 214/594 (36%), Positives = 330/594 (55%), Gaps = 30/594 (5%)

Query: 32  NHSSLLSSLTECKSMSQLK---QIHAQALRTAL--PQQHKTLLIYSRIIHFASFADLDYA 86
           + SS  S +  C ++ +L+   Q+H   ++      Q  +T L+   + +    A LD A
Sbjct: 298 SESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALM---VAYSKCMAMLD-A 353

Query: 87  FRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
            R+F +     N  +W  +I    ++ D K +A+ LF  M  +G V P++ T+   L A 
Sbjct: 354 LRLFKETGFLGNVVSWTAMISGFLQN-DGKEEAVGLFSEMKRKG-VRPNEFTYSVILTAL 411

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
             +       + HA + K        +  +L+  Y   G +D A KVF  +  + +V+W+
Sbjct: 412 PVI----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWS 467

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGL-ATLSLGMWAHAYILR 263
            M+  + Q GE ++A+K+F  + +   +P+ +TF SI + CA   A++  G   H + ++
Sbjct: 468 AMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIK 527

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                L + + V+++L+ MY K G ++ A +VF+   ++DL SWNS+I G+A HG+A  A
Sbjct: 528 S---RLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKA 584

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L  F  +  +     +S+TF+GV +AC H G+V EG  YFD+M+ +  I P  EH  C+V
Sbjct: 585 LDVFKEMK-KRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMV 643

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE--SEGG 441
           DL +RAG +++A+ ++ NMP    + IWR++L A C+ H    L    A+++I    E  
Sbjct: 644 DLYSRAGQLEKAMKVIDNMPNLAGSTIWRTIL-AACRVHKKTELGRLAAEKIIAMIPED- 701

Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
             S  YVLLS +YA +  W +   VRKLM ++ V KEPG S IE+    + F AGD SHP
Sbjct: 702 --SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHP 759

Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
              QIY  L+ +  +LK  GY PD S   + D  D+ K++ L  HSERLAIA G++    
Sbjct: 760 LKDQIYMKLEDLSTRLKDLGYEPDTSY-VLQDIDDEHKEAVLAQHSERLAIAFGLIATPK 818

Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF-KDGSCSCMDYW 614
           G P+ + KNLRVC DCH V KLI++I   EI+VRD  RFHHF  DG CSC D+W
Sbjct: 819 GSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 154/332 (46%), Gaps = 20/332 (6%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF +++  N  TW TLI   AR+     + + LF RM ++G   P+  TF  AL   A  
Sbjct: 154 VFDEMKERNVVTWTTLISGYARN-SLNEEVLTLFMRMQDEG-TQPNSFTFAAALGVLAEE 211

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +G Q H  + K GL   + ++NSLI+ Y  CG++  A  +FD    +S+V+WN MI
Sbjct: 212 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 209 DAFVQFGEFDSALKLFRRMQI----LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
             +   G    AL +F  M++    L E    +F SI   CA L  L      H  +++ 
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSES---SFASIIKLCANLKELRFTEQLHCSVVK- 327

Query: 265 CDHSLVTDVLVNNSLIDMYCKC-GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
             +  V D  +  +L+  Y KC   LD  R   E+    ++ SW ++I GF  +   E A
Sbjct: 328 --YGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEA 385

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           +  F  +   +   PN  T+  +L+A     ++S    +  V+   Y  +  +     L+
Sbjct: 386 VGLFSEM-KRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVGT--ALL 439

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           D   + G +DEA  + S +  K D V W ++L
Sbjct: 440 DAYVKLGKVDEAAKVFSGIDNK-DIVAWSAML 470



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 6/251 (2%)

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT 137
           AS + L YA  +F +  + +  ++ +L+   +R  D + Q        I+   +  D   
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSR--DGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197
           F   LK  A L     G+Q H    K G + DV +  SL+  Y    +      VFD M 
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256
           ER++V+W  +I  + +    +  L LF RMQ    +P+ +TF +     A       G+ 
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316
            H  +++   + L   + V+NSLI++Y KCG++  AR +F+    + + +WNS+I G+A 
Sbjct: 220 VHTVVVK---NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 276

Query: 317 HGRAEAALKYF 327
           +G    AL  F
Sbjct: 277 NGLDLEALGMF 287



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 7/238 (2%)

Query: 181 ASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQ 239
           AS   L  A+ +FD   +R   S+  ++  F + G    A +LF  +Q L  E D   F 
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           S+    A L     G   H   ++      + DV V  SL+D Y K  +    R VF+ M
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKF---GFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEM 158

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
            +R++ +W ++I G+A +   E  L  F R+  +E   PNS TF   L      G+   G
Sbjct: 159 KERNVVTWTTLISGYARNSLNEEVLTLFMRM-QDEGTQPNSFTFAAALGVLAEEGVGGRG 217

Query: 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
                V++    +   +     L++L  + GN+ +A  L     +K   V W S++  
Sbjct: 218 LQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISG 273


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/524 (36%), Positives = 302/524 (57%), Gaps = 18/524 (3%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P    +N  I  C+R+     +A+ L   M  +G+   D++T P AL + A L   +   
Sbjct: 4   PPGVAYNAAISRCSRA-GLHQRALALLHEMRARGH-RADEYTLPPALNSAALLRLPADAL 61

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             H+ + + GL + +++ N+L+  YA       A  VFD M  R +VSW  ++    +  
Sbjct: 62  --HSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSR 119

Query: 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
             DSAL+++R M      PD +   +  S+CAG   L LG   HA  +R      ++   
Sbjct: 120 SHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLS--- 176

Query: 275 VNNSLIDMYCKCGSLDIARQVFES--MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           V NSL+ MY K GSL  A++VF++  + + D  +W ++I+G+A +GR   +L+ +  +V 
Sbjct: 177 VGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMV- 235

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
                P+ +TF+G+L AC+H G+V  GR +F  M  E+ I P  +HY C+VDLL RAG +
Sbjct: 236 RSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRL 295

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV--IESEGGICSGVYVLL 450
           DEA+ L++    + DA +W++LL A C+ H +  L+E  A  V  ++    +    YV+L
Sbjct: 296 DEAMDLLNRSTTRLDATVWKALL-AACRTHRNAELAEHAAAMVWRLDPTDAV---PYVML 351

Query: 451 SRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFL 510
           S +Y+ A RW DV  VR  M  +G+TKEPGCS +  +G+ H F+  D  HP+  ++Y  +
Sbjct: 352 SNLYSRAGRWGDVARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKV 411

Query: 511 DLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
           + + E+++ +GY  D + A + DE  +G++  L  HSERLA+A G+L +  G PIRVFKN
Sbjct: 412 EEMTERIRGQGYVADTAWA-LQDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKN 470

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LRVC DCH   K++++ +  EI++RD   FHH KDG+CSC DYW
Sbjct: 471 LRVCGDCHAAIKMVAQAYGREIVLRDSNCFHHMKDGACSCGDYW 514


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 320/577 (55%), Gaps = 24/577 (4%)

Query: 21   FNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQ----QHKTLLIYSR 73
            F+  R  GS  ++ +L+S+L+ C S+  +   +QIH   L+  L       +  L +Y+ 
Sbjct: 476  FHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAE 535

Query: 74   IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
               F          +VF  +   +  +WN++I A + S  +  QA+  F +M+  G  L 
Sbjct: 536  TGCFTE------CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGL- 588

Query: 134  DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
             + TF   L A + L       Q HA + K  L  D  I N+L+  Y  CG ++   K+F
Sbjct: 589  SRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIF 648

Query: 194  DNMLE-RSLVSWNVMIDAFVQFGEFDSALKL-FRRMQILFEPDGYTFQSITSACAGLATL 251
              M E R  VSWN MI  ++       A+ L +  MQ     D +TF +I SACA +ATL
Sbjct: 649  ARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATL 708

Query: 252  SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
              GM  HA  +R C   L +DV+V ++L+DMY KCG +D A + FE MP R++ SWNS+I
Sbjct: 709  ERGMEVHACGIRAC---LESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMI 765

Query: 312  LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
             G+A HG  E ALK F R++++    P+ +TFVGVLSAC+H G V EG ++F  M   Y 
Sbjct: 766  SGYARHGHGEKALKLFTRMMLDGQ-PPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYR 824

Query: 372  ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA-SVVLSEE 430
            ++P +EH+ C+VDLL RAG +DE    +++MPMKP+ +IWR++L ACC+ +  +  L   
Sbjct: 825  LSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRR 884

Query: 431  VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
             A+ ++E E       YVLL+ +YAS  +W DV   R  M +  V KE GCS + +    
Sbjct: 885  AAEMLLELEPQNAVN-YVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGV 943

Query: 491  HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
            H F AGD  HP+   IY  L  ++ K++  GY P  ++ A+ D   + K+  L  HSE++
Sbjct: 944  HVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQ-TKYALFDLELENKEELLSYHSEKI 1002

Query: 551  AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRI 587
            A+A  +L  +  +PIR+ KNLRVC DCH     IS+I
Sbjct: 1003 AVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKI 1038



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 195/389 (50%), Gaps = 34/389 (8%)

Query: 48  QLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIR 106
           + +++H Q+++         L + + +I+ +    DL  A ++F ++ N N  TW  LI 
Sbjct: 89  EARELHLQSIKYGFV---GNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLIS 145

Query: 107 ACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKAC--AYLFAFSQGKQAHAHIFK 163
              +  + KP +A   F+ M+  G  +P+ + F  AL+AC  +       G Q H  I K
Sbjct: 146 GYTQ--NGKPDEACARFRDMVRAG-FIPNHYAFGSALRACQESGPSGCKLGVQIHGLISK 202

Query: 164 RGLVSDVYINNSLIHFYASCGHLDLAN---KVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
               SDV + N LI  Y SC  LD AN    VFD +  R+ +SWN +I  + + G+  SA
Sbjct: 203 TRYGSDVVVCNVLISMYGSC--LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSA 260

Query: 221 LKLFRRMQ-----ILFEPDGYTFQS-ITSACAGLATLSLGMWAHAYILRHCDHS-LVTDV 273
             LF  MQ       F+P+ YTF S IT+AC   +++  G+     +L   + S  + D+
Sbjct: 261 YDLFSSMQKEGLGFSFKPNEYTFGSLITTAC---SSVDFGLCVLEQMLARVEKSGFLQDL 317

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V+++L+  + + G  D A+ +FE M  R++ S N +++G     + EAA K F  +  +
Sbjct: 318 YVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM--K 375

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRD-----YFDVMINEYNITPVLEHYGCLVDLLAR 388
           +    NS ++V +LSA +   ++ EGR      +  V+    N   V    G LV++ A+
Sbjct: 376 DLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG-LVNMYAK 434

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           +G I +A  +   M ++ D+V W SL+  
Sbjct: 435 SGAIADACSVFELM-VEKDSVSWNSLISG 462



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 184/377 (48%), Gaps = 14/377 (3%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG---NVLPDKHTF-PFA 141
           A  VF  I   NS +WN++I   +R  DA   A  LF  M ++G   +  P+++TF    
Sbjct: 229 ARSVFDGIGIRNSISWNSIISVYSRRGDA-VSAYDLFSSMQKEGLGFSFKPNEYTFGSLI 287

Query: 142 LKACAYL-FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
             AC+ + F     +Q  A + K G + D+Y++++L+  +A  G  D A  +F+ M  R+
Sbjct: 288 TTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRN 347

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
           +VS N ++   V+  + ++A K+F  M+ L   +  ++  + SA +  + L  G      
Sbjct: 348 VVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGRE 407

Query: 261 ILRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
           +  H   + + D  V + N L++MY K G++  A  VFE M ++D  SWNS+I G   + 
Sbjct: 408 VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNE 467

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLE 377
            +E A + F R+    S  P++ T +  LS+C   G +  G   + D +  +  +   + 
Sbjct: 468 CSEDAAESFHRMRRTGSM-PSNFTLISTLSSCASLGWIMLGEQIHCDGL--KLGLDTDVS 524

Query: 378 HYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
               L+ L A  G   E L + S MP + D V W S++ A     ASV  + +   Q++ 
Sbjct: 525 VSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 583

Query: 438 SEGGICSGVYV-LLSRV 453
              G+    ++ +LS V
Sbjct: 584 GGWGLSRVTFINILSAV 600


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 327/625 (52%), Gaps = 71/625 (11%)

Query: 36  LLSSLTECKS-MSQLKQIHAQALRTALPQQHKTLLIYSRIIH--FASFAD--LDYAFRVF 90
           LLS L+ C + +   KQIH     T L   H     + +++     S +D  L+Y+ R+F
Sbjct: 12  LLSLLSNCNTTLKTTKQIHTHLYVTGL---HTHPFFFGKLLLNCAVSISDHVLNYSLRLF 68

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY-LF 149
           +   NP++F +NTLIR+ + S      ++  F +++    +LPD  +F F LK  A    
Sbjct: 69  HHFPNPDTFMYNTLIRSLSHS-STPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGC 127

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN---- 205
           +  QG Q H+H F+ G    +++  +LI  YA CG  + A KVFD M + ++V+WN    
Sbjct: 128 SKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVT 187

Query: 206 ----------------------------------VMIDAFVQFGEFDSALKLFRRM-QIL 230
                                              MI  F + G F  A   F+ + +  
Sbjct: 188 ACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDR 247

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
             P   +   + SACA       G   H ++ +      +  V VNN+LID Y KCG++D
Sbjct: 248 NRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKA---GFLCIVSVNNALIDTYSKCGNVD 304

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
           +A+ VF               +  A+HGRA+ A++ F  +  E    P+ +TF+ +L AC
Sbjct: 305 MAKLVFN--------------ISLAMHGRADEAIRVFHEME-ESGVRPDGVTFISLLYAC 349

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H G+V +G   F  M N Y I P +EHYGC+VDL  RA  + +A   +  MP+ P+ +I
Sbjct: 350 SHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVII 409

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           WR+LL AC   H ++ L+E V  ++ E +    SG +VLLS VYA A +W DV  +R+ M
Sbjct: 410 WRTLLGAC-SIHGNIELAELVKARLAEMDPN-NSGDHVLLSNVYAVAGKWKDVAGIRRTM 467

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR-GYTPDYSQA 529
            ++ + K PG S IEID + + F AG+  +  TK+ +  L  I  +L+   GY P   ++
Sbjct: 468 IEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQV-RS 526

Query: 530 AMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFN 589
            + D  ++ K+ S+  HSE+LA A GI  L  G  +R+ KNLRVC DCH V KLIS+++ 
Sbjct: 527 VLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQ 586

Query: 590 VEIIVRDRARFHHFKDGSCSCMDYW 614
           VEIIVRDR+RFH FK G CSC DYW
Sbjct: 587 VEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 208/620 (33%), Positives = 337/620 (54%), Gaps = 52/620 (8%)

Query: 29  SFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           S  + ++LL+ L  C  +++ + +  Q     +   +      + I  +     +D A  
Sbjct: 320 SIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWN------AMITGYMQNGMVDEAKE 373

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N+ +W  +I   A++  ++ +A+ L Q +   G +LP   +   +  AC+++
Sbjct: 374 LFDRMPFRNTISWAGMIAGYAQNGRSE-EALDLLQALHRNG-MLPSLSSLTSSFLACSHI 431

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL-------------------- 188
            A   G+Q H+   K G   + Y+ N+LI  Y  C +++                     
Sbjct: 432 GALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFI 491

Query: 189 -----------ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGY 236
                      A  +FDNML R +VSW  +I A+ Q    D A++ F+ M    E P+  
Sbjct: 492 AALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSP 551

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
               + S C GL +  LG   H   ++H    + ++++V N+L+ MY KCG  D + +VF
Sbjct: 552 ILTILLSVCGGLGSAKLGQQIHTVAIKH---GMDSELIVANALMSMYFKCGCAD-SHKVF 607

Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS--PNSITFVGVLSACNHRG 354
           +SM +RD+ +WN+ I G A HG    A+K ++ +   ES    PN +TFVG+L+AC+H G
Sbjct: 608 DSMEERDIFTWNTFITGCAQHGLGREAIKMYEHM---ESVGVLPNEVTFVGLLNACSHAG 664

Query: 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +V EG  +F  M  +Y +TP+LEHY C+VDLL R G++  A   + +MP++PD VIW +L
Sbjct: 665 LVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSAL 724

Query: 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474
           L A CK H +  +    A+++  +E    +G YV+LS +Y+S   W +V  +RK+M  +G
Sbjct: 725 LGA-CKIHKNAEIGRRAAEKLFTTEPS-NAGNYVMLSNIYSSLGMWVEVAELRKIMKQRG 782

Query: 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE 534
           V+KEPGCS ++I    H F  GD  H + ++I   L  +   L+  GY PD ++  + D 
Sbjct: 783 VSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPD-TEFVLHDI 841

Query: 535 LDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV 594
            ++ K+SSL  HSE+LA+A G+L    GMPI++ KNLR+C DCH   K +S +   +I +
Sbjct: 842 DEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDI 901

Query: 595 RDRARFHHFKDGSCSCMDYW 614
           RD  RFHHF++GSCSC D+W
Sbjct: 902 RDGNRFHHFRNGSCSCGDFW 921



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 160/370 (43%), Gaps = 43/370 (11%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS---VDAK-----------PQ 117
           +RI   A    L  A  VF  + + +   WN++I A   S    DA+             
Sbjct: 38  ARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRT 97

Query: 118 AIVLFQRMIEQGNVL---------PDKHTFPFALKACAYLFAFSQGKQAHAH-IFKRGLV 167
           A +L       G VL         P+++T  +      Y+     G    A  +F     
Sbjct: 98  ATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYV---QNGDITMARRLFDAMPS 154

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            DV   NS++  Y     +  A  +F  M +R+LV+W VMI  +V+  +      +FR M
Sbjct: 155 RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 228 Q-ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                 PD   F S+ SA  GL  L +       +L+       +DV++  S++++Y + 
Sbjct: 215 HHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKT---GFESDVVIGTSILNVYTRD 271

Query: 287 GS-LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
            S LDIA + F+ M +R+  +W+++I   +  GR +AA+  + R  V+    P+    + 
Sbjct: 272 ASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS--IPSQTALLT 329

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
            L+ C   G ++E R  F+ + +     P++  +  ++    + G +DEA  L   MP +
Sbjct: 330 GLARC---GRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFR 381

Query: 406 PDAVIWRSLL 415
            + + W  ++
Sbjct: 382 -NTISWAGMI 390



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 49/282 (17%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A+ +F Q+   N  TW  +I    R ++   +   +F RM+      PD+  F   L A 
Sbjct: 176 AWNLFKQMPQRNLVTWTVMISGYVR-IEQHGKGWDIF-RMMHHEGASPDQSNFASVLSAV 233

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA-SCGHLDLANKVFDNMLERSLVSW 204
             L      +     + K G  SDV I  S+++ Y      LD+A K FD M+ER+  +W
Sbjct: 234 TGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTW 293

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
           + MI A    G  D+A+ ++ R     +P     +SI S  A L  L+            
Sbjct: 294 STMIAALSHGGRIDAAIAVYGR-----DP----VKSIPSQTALLTGLA------------ 332

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                               +CG +  AR +FE +P   + SWN++I G+  +G  + A 
Sbjct: 333 --------------------RCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAK 372

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           + FDR+        N+I++ G+++     G   E  D    +
Sbjct: 373 ELFDRMPFR-----NTISWAGMIAGYAQNGRSEEALDLLQAL 409



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 27/276 (9%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           D   +++ I   A  G L  A +VFD M  R +++WN MI A+   G  + A       +
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDA-------R 84

Query: 229 ILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           ILF+   G   ++ T   +G A L   + A     R  D     + +  N+++  Y + G
Sbjct: 85  ILFDAISGGNVRTATILLSGYARLGRVLDAR----RVFDGMPERNTVAWNAMVSCYVQNG 140

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
            + +AR++F++MP RD+TSWNS++ G+    +   A   F ++        N +T+  ++
Sbjct: 141 DITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP-----QRNLVTWTVMI 195

Query: 348 SACNHRGMVSEGRDYFDVMINE------YNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           S         +G D F +M +E       N   VL     L DL    G ++    LV  
Sbjct: 196 SGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDL----GVLEVLRPLVLK 251

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
              + D VI  S+L+   +  +++ ++ +    ++E
Sbjct: 252 TGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVE 287


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/582 (33%), Positives = 325/582 (55%), Gaps = 14/582 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQI 93
           SL S+L     ++  ++ HA A++  L   H  L + + ++  +     ++ + +VF  +
Sbjct: 372 SLSSALGHLSRLNNGREFHAYAIKQRL---HTDLQVGNTLMDMYIKCGSIECSAKVFESM 428

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
              +  +W T++ AC        +A+ +   + ++G ++ D       L+ C  L + S 
Sbjct: 429 GIRDHISWTTIL-ACFAQSSRHSEALEMILELQKEG-IMVDSMMIGSILETCCGLKSISL 486

Query: 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
            KQ H +  + GL+ D+ + N LI  Y  CG  D +  +F  + ++ +VSW  MI+    
Sbjct: 487 LKQVHCYAIRNGLL-DLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTN 545

Query: 214 FGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272
            G  + A+ LF  MQ    +PD     SI  A AGL++L+ G   H +++R    +   +
Sbjct: 546 NGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRR---NFPIE 602

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
             V +SL+DMY  CGS++ A +VFE    +D+  W ++I    +HG  + A+  F R++ 
Sbjct: 603 GPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRML- 661

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           +   +P+ ++F+ +L AC+H  +V EG+ Y D+M+++Y + P  EHY C+VD+L R+G  
Sbjct: 662 QTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQT 721

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           +EA   +  MPM P + +W +LL AC + H +  L+   A +++E E     G Y+L+S 
Sbjct: 722 EEAYEFIKTMPMDPKSAVWCALLGAC-RVHRNYGLAVVAANKLLELEPDN-PGNYILVSN 779

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           V+A   +WN+    R  M ++G+ K P CS IEI    H F +GD  H  ++ I+  L  
Sbjct: 780 VFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSE 839

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           I E L+  G   + ++  + D  ++ K   L  HSER+AIA G+++ +PGMPIR+ KNLR
Sbjct: 840 ITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLR 899

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCHE TKL+S++F  +I+VRD  RFHHF  GSCSC D+W
Sbjct: 900 VCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 201/409 (49%), Gaps = 28/409 (6%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALR--TALPQQHKTLLIYSR 73
           ++F   ++ G   N  + ++ L  C  +  L   +++HA  L+  + L  Q   LL+   
Sbjct: 253 ALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVM-- 310

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
              +A +  +D A RVF QI   +  +WN+++ +C        +AI  F  M++ G   P
Sbjct: 311 ---YAKYGRVDSALRVFGQIAEKDYISWNSML-SCYVQNSFYAEAIDFFGEMLQHG-FQP 365

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
           D         A  +L   + G++ HA+  K+ L +D+ + N+L+  Y  CG ++ + KVF
Sbjct: 366 DHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVF 425

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ---ILFEPDGYTFQSITSACAGLAT 250
           ++M  R  +SW  ++  F Q      AL++   +Q   I+   D     SI   C GL +
Sbjct: 426 ESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMV--DSMMIGSILETCCGLKS 483

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           +SL    H Y +R+     + D+++ N LID+Y +CG  D +  +F+ + K+D+ SW S+
Sbjct: 484 ISLLKQVHCYAIRNG----LLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSM 539

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE- 369
           I     +GR   A+  F  +  + +  P+S+  V +L A      +++G+     +I   
Sbjct: 540 INCCTNNGRLNGAVFLFTEM-QKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRN 598

Query: 370 YNIT-PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           + I  PV+     LVD+ +  G+++ A+ +      K D V+W ++++A
Sbjct: 599 FPIEGPVVSS---LVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINA 643



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 179/375 (47%), Gaps = 15/375 (4%)

Query: 50  KQIHAQALRT-ALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           +Q+HA A+ T +L +     L    +  +     +D A R+F  +     F+WN L+ A 
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 109 ARSVDAKPQAIVLFQRMIEQG--NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGL 166
             S  A  +A+ ++  M         PD  T    LKAC        G + H    K GL
Sbjct: 137 LSSGSAG-EAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLF 224
                + N+LI  YA CG LD A +VF+ + +  R + SWN ++   VQ G    AL LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
           R MQ   F  + YT  ++   CA L  LSLG   HA +L+ C   L       N+L+ MY
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLK-CGSELNIQC---NALLVMY 311

Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
            K G +D A +VF  + ++D  SWNS++  +  +     A+ +F  + ++  F P+    
Sbjct: 312 AKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEM-LQHGFQPDHACV 370

Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
           V + SA  H   ++ GR++    I +  +   L+    L+D+  + G+I+ +  +  +M 
Sbjct: 371 VSLSSALGHLSRLNNGREFHAYAIKQ-RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMG 429

Query: 404 MKPDAVIWRSLLDAC 418
           ++ D + W ++L AC
Sbjct: 430 IR-DHISWTTIL-AC 442



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 144/295 (48%), Gaps = 22/295 (7%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS---DVYINNSLIHFYASCGHLDLA 189
           P +  + + L   A   A ++G+Q HAH    G ++   D ++   L+  Y  CG +D A
Sbjct: 55  PAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDA 114

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF----EPDGYTFQSITSAC 245
            ++F+ M  R++ SWN ++ A++  G    A++++  M+        PDG T  S+  AC
Sbjct: 115 RRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKAC 174

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RD 303
                   G   H   ++     L    LV N+LI MY KCG LD A +VFE + +  RD
Sbjct: 175 GAEGDGRCGGEVHGLAVK---VGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARD 231

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
           + SWNS++ G   +GR   AL  F R +    F  NS T V VL  C   G++S GR+  
Sbjct: 232 VASWNSVVSGCVQNGRTLEALALF-RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELH 290

Query: 364 DVMI---NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
             ++   +E NI         L+ + A+ G +D AL +   +  K D + W S+L
Sbjct: 291 AALLKCGSELNI-----QCNALLVMYAKYGRVDSALRVFGQIAEK-DYISWNSML 339


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 334/602 (55%), Gaps = 42/602 (6%)

Query: 23  NNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFA 81
           N+R E    + ++L+S   +   MS+ +++  +     +P   + ++ ++ ++  +A   
Sbjct: 186 NSRTEWDVISWNALMSGYVQWGKMSEARELFDR-----MPG--RDVVSWNIMVSGYARRG 238

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG----NVLPDKHT 137
           D+  A R+F      + FTW  ++   A++             M+E+     + +P+++ 
Sbjct: 239 DMVEARRLFDAAPVRDVFTWTAVVSGYAQN------------GMLEEARRVFDAMPERNA 286

Query: 138 FPFALKACAYL--FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
             +     AY+      + K+    +F      +V   N+++  YA  G L+ A  VFD 
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLG 254
           M ++  VSW  M+ A+ Q G  +  L+LF  M    E  +   F  + S CA +A L  G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
           M  H  ++R           V N+L+ MY KCG+++ AR  FE M +RD+ SWN++I G+
Sbjct: 403 MQLHGRLIRA---GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGY 459

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HG  + AL+ FD ++   S  P+ IT VGVL+AC+H G+V +G  YF  M +++ +T 
Sbjct: 460 ARHGFGKEALEIFD-MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             EHY C++DLL RAG + EA  L+ +MP +PD+ +W +LL A  + H +  L    A++
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS-RIHRNPELGRSAAEK 577

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           + E E    +G+YVLLS +YAS+ +W D   +R +M ++GV K PG S IE+    H F 
Sbjct: 578 IFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMV--DELDDGKQSSLRLHSERLAI 552
           AGD  HP+ ++IY FL+ +D ++K  GY    S   MV  D  ++ K+  L+ HSE+LA+
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRMKKAGYV---SATDMVLHDVEEEEKEHMLKYHSEKLAV 693

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GILN+ PG PIRV KNLRVC DCH   K IS I    I++RD  RFHHF+ GSCSC D
Sbjct: 694 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGD 753

Query: 613 YW 614
           YW
Sbjct: 754 YW 755



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 170/384 (44%), Gaps = 67/384 (17%)

Query: 54  AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVD 113
           A+ L  A+P++  T    + +  +++   L  A  +F  I  P+++++NTL+ A A S  
Sbjct: 57  AERLFAAMPRR-STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVS-S 114

Query: 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYIN 173
           +   A  LF  M      + D  T+   + + A     S  +    H F      D    
Sbjct: 115 SLADARGLFDEM-----PVRDSVTYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSW 165

Query: 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233
           N ++  Y   G ++ A  +F++  E  ++SWN ++  +VQ+G+   A +LF RM      
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP----- 220

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
                                                 DV+  N ++  Y + G +  AR
Sbjct: 221 ------------------------------------GRDVVSWNIMVSGYARRGDMVEAR 244

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           ++F++ P RD+ +W +++ G+A +G  E A + FD +        N++++  +++A   R
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-----ERNAVSWNAMVAAYIQR 299

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
            M+ E ++ F++M    N+      +  ++   A+AG ++EA  +   MP K DAV W +
Sbjct: 300 RMMDEAKELFNMMPCR-NVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAA 353

Query: 414 LLDACCKKHASVVLSEEVAKQVIE 437
           +L A    ++    SEE  +  IE
Sbjct: 354 MLAA----YSQGGCSEETLQLFIE 373



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L  +V+ +N  I  + + G +  A ++F +MP+R  +++N+++ G++ +GR   A   F 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +   +++S N++     +S+      +++ R  FD M    ++T     Y  ++   A 
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSS-----LADARGLFDEMPVRDSVT-----YNVMISSHAN 143

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
            G +  A H     P K DAV W  +L A
Sbjct: 144 HGLVSLARHYFDLAPEK-DAVSWNGMLAA 171


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 311/534 (58%), Gaps = 44/534 (8%)

Query: 99  FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
            +W +LI A +R+  A+ +A+  F+ M+  G + PD+ T    L ACA L     G+  H
Sbjct: 205 ISWTSLIAAYSRANRAR-EAVGCFKTMLSHG-IAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCG--------------------------------HL 186
             + ++G+ +   +  +LI  YA CG                                H+
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHV 322

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
           D+A  +FD M  R ++++N M+  ++  G+   AL LF  M+      D +T  ++ +AC
Sbjct: 323 DVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTAC 382

Query: 246 AGLATLSLGMWAHAYILRHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           A L  L  G   HA I    +  LV  D+ +  +L+DMY KCG +D A  VF+ M KRD+
Sbjct: 383 ASLGALQQGRALHACI----EQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDV 438

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
            +W ++I G A +G  +AAL++F ++  +  F PNS++++ VL+AC+H  +++EGR YFD
Sbjct: 439 HTWTAMIAGLAFNGMGKAALEHFYQMRCD-GFQPNSVSYIAVLTACSHSCLLNEGRLYFD 497

Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
            M   YNI P +EHYGC++DLL R+G +DEA+ LV  MP++P+AVIW S+L A C+ H  
Sbjct: 498 EMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSA-CRVHKH 556

Query: 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSI 484
           + L++  A+ +++ E     GVYV L  +Y  +R+W +   +R LM ++ V K  G SSI
Sbjct: 557 IDLAQCAAEHLLKLEPDE-DGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSI 615

Query: 485 EIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLR 544
            + G  H+F   D SHP+  +I   L+ I  +LKS GY+P  SQ   VD  ++ K+ +L 
Sbjct: 616 TVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQIT-VDVDEEEKEQALL 674

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRA 598
            HSE+LAIA G++NL P +P+ + KNLRVC+DCH   KLISR++N EIIVRDR+
Sbjct: 675 AHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRS 728



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 166/401 (41%), Gaps = 76/401 (18%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L YA  +F ++  P++F ++T +RAC+R+     +  +LF+RM   G V PD  TF F  
Sbjct: 53  LRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAG-VRPDGFTFHFLF 110

Query: 143 KACAYLFAFSQG----KQAHAHIFKRGLVSDV-YINNSLIHFYASCGHLDLANKVFDNML 197
           K C+   +           HA   +  L S   +++NSLIH Y   G    A + FD + 
Sbjct: 111 K-CSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIH 169

Query: 198 ERSLVSWNVMIDAFVQFG------------------EFDSALKLFRRMQILFE------- 232
            +  V+W ++I    + G                   + S +  + R     E       
Sbjct: 170 VKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKT 229

Query: 233 -------PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
                  PD  T  ++ SACA L  L LG   H  +    +  + T   +  +LIDMY K
Sbjct: 230 MLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVE---EKGMPTSENLVVALIDMYAK 286

Query: 286 CGSLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI--- 341
           CG    A+QVF+++ +     SWN+II G+  HG  + A   FD + V +  + NS+   
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346

Query: 342 ---------------------------TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
                                      T V +L+AC   G + +GR      I +  +  
Sbjct: 347 YIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGR-ALHACIEQRLVEA 405

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            +     L+D+  + G +DEA  +   M  K D   W +++
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMI 445



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +L+    +C      +Q+     R   PQ    +     I  +     +D A  +F ++E
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAI-----IDGYCKHGHVDVARSLFDEME 333

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
             +  T+N+++     S   + +A++LF  M  + ++  D  T    L ACA L A  QG
Sbjct: 334 VRDIITFNSMMTGYIHSGQLR-EALLLFMSM-RRHDLRVDNFTVVNLLTACASLGALQQG 391

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  HA I +R + +D+Y+  +L+  Y  CG +D A  VF  M +R + +W  MI      
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451

Query: 215 GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLG--MWAHAYILRHCDHSLVT 271
           G   +AL+ F +M+   F+P+  ++ ++ +AC+    L+ G   +    IL    +++  
Sbjct: 452 GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRIL----YNIHP 507

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGR---AEAALKYF 327
            +     +ID+  + G LD A  + ++MP + +   W SI+    +H     A+ A ++ 
Sbjct: 508 QIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHL 567

Query: 328 DRLVVEE 334
            +L  +E
Sbjct: 568 LKLEPDE 574



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 112/272 (41%), Gaps = 41/272 (15%)

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFG-EFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           HL  A  +FD M   + + ++  + A  + G +      LFRRM+     PDG+TF  + 
Sbjct: 52  HLRYALHLFDRMPPSTFL-FDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLF 110

Query: 243 SACAGLA---TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
              +  +   +L L    HA  LR    S      V+NSLI MY + G    AR+ F+ +
Sbjct: 111 KCSSSSSRPHSLLLCTMLHAACLRTMLPSAAP--FVSNSLIHMYIRLGLAADARRAFDEI 168

Query: 300 -------------------------------PKRDLTSWNSIILGFALHGRAEAALKYFD 328
                                          P RD+ SW S+I  ++   RA  A+  F 
Sbjct: 169 HVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCF- 227

Query: 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
           + ++    +P+ +T + VLSAC     +  GR    +++ E  +         L+D+ A+
Sbjct: 228 KTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTSENLVVALIDMYAK 286

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
            G+   A  +   +   P    W +++D  CK
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK 318


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 309/530 (58%), Gaps = 23/530 (4%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N  +W T+I    ++     Q + + +++ E   V+P+K+   +     A L
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQN-----QQVDIARKLFE---VMPEKNEVSWT----AML 322

Query: 149 FAFSQ-GKQAHA-HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
             ++  G+   A  +F    +  V   N++I  +   G +  A +VFD M E+   +W+ 
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  + + G    AL+LFR MQ     P+  +  S+ S CAGLA L  G   HA ++R  
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS- 441

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 DV V + L+ MY KCG+L  A+QVF+    +D+  WNSII G+A HG    AL+
Sbjct: 442 --QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALR 499

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  +       P+ +TFVGVLSAC++ G V +G + F+ M  +Y +   +EHY C+VDL
Sbjct: 500 VFHDMHFS-GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDL 558

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG ++EA+ L+  MPM+ DA+IW +LL AC + H  + L+E  AK+++  E    +G
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLGAC-RTHMKLDLAEVAAKKLLVLEPK-NAG 616

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS-HPQTK 504
            ++LLS +YAS  RW+DV  +R+ M D+ V+K PGCS I ++   H+F  GD+S HP+  
Sbjct: 617 PFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHS 676

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +I   L+ +   L+  GY PD S   + D  ++ K  SL  HSE+LA+A G+L +  GMP
Sbjct: 677 EINRILEWLSGLLREAGYYPDQS-FVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMP 735

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCH   KLI+++   EII+RD  RFHHFKDGSCSC DYW
Sbjct: 736 IRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 147/331 (44%), Gaps = 15/331 (4%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           +NE S+   +++L   T C  + +     A  L  A+P +   +   + I+ F    ++ 
Sbjct: 313 KNEVSW---TAMLKGYTNCGRLDE-----ASELFNAMPIK-SVVACNAMILCFGQNGEVP 363

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A +VF Q+   +  TW+ +I+   R    +  A+ LF RM+++  + P+  +    L  
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERK-GLELDALELF-RMMQREGIRPNFPSLISVLSV 421

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           CA L     G++ HA + +     DVY+ + L+  Y  CG+L  A +VFD    + +V W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N +I  + Q G    AL++F  M      PD  TF  + SAC+    +  G+    +   
Sbjct: 482 NSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL--EIFNSM 539

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEA 322
              + +   +     ++D+  + G L+ A  + E MP + D   W +++     H + + 
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           A     +L+V E  +      +  + A   R
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGR 630



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 152/353 (43%), Gaps = 68/353 (19%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGN 130
           S I  ++    ++ A  VF ++ + N  +WN+++    +  + +PQ A  +F +M E+  
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQ--NKRPQEAQNMFDKMSERNT 160

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +  +                              GLVS  YINN +I         + A 
Sbjct: 161 ISWN------------------------------GLVSG-YINNGMI---------NEAR 180

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           +VFD M ER++VSW  M+  +V+ G    A  LF +M     P+     S T    GL  
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-----PEKNVV-SWTVMLGGL-- 232

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G    A   R  D     DV+   ++I  YC+ G L  AR +F+ MP+R++ SW ++
Sbjct: 233 LQEGRIDEA--CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTM 290

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+  + + + A K F+  V+ E    N +++  +L    + G + E  + F+ M    
Sbjct: 291 ITGYVQNQQVDIARKLFE--VMPEK---NEVSWTAMLKGYTNCGRLDEASELFNAM---- 341

Query: 371 NITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
              P+     C  ++    + G + +A  +   M  K D   W +++    +K
Sbjct: 342 ---PIKSVVACNAMILCFGQNGEVPKARQVFDQMREK-DEGTWSAMIKVYERK 390



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 11/143 (7%)

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           ++  NSLI  Y + G ++ AR VF+ M  +++ SWNSI+ G+  + R + A   FD++  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
                 N+I++ G++S   + GM++E R+ FD M  E N+      +  +V    + G I
Sbjct: 157 ----ERNTISWNGLVSGYINNGMINEAREVFDRM-PERNVVS----WTAMVRGYVKEGMI 207

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
            EA  L   MP K + V W  +L
Sbjct: 208 SEAETLFWQMPEK-NVVSWTVML 229


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/568 (35%), Positives = 304/568 (53%), Gaps = 45/568 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A  +F  +E  +  +WN +I A          A+  F RM+   ++ PD+ T    L
Sbjct: 245 MDLALSMFENMEERSIVSWNAII-AGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVL 303

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK----------- 191
            ACA L     GKQ H++I + G+     I N+LI  YA  G ++ A +           
Sbjct: 304 SACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLN 363

Query: 192 ----------------------VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-Q 228
                                 VFD M  R +++W  MI  + Q G+ D A++LFR M +
Sbjct: 364 VISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIR 423

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              EP+ +T  ++ SACA LA L  G   H   +R      V+   V+N++I +Y + GS
Sbjct: 424 SGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVS---VSNAIITVYARSGS 480

Query: 289 LDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           + +AR+VF+ +  +++  +W S+I+  A HG  E A+  F+ ++      P+ +T++GV 
Sbjct: 481 VPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEML-RVGVKPDRVTYIGVF 539

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SAC H G + +G+ Y++ M+NE+ I P + HY C+VDLLARAG + EA   +  MP+ PD
Sbjct: 540 SACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPD 599

Query: 408 AVIWRSLLDAC-CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
            V+W SLL AC  +K+A +    E+A + + S     SG Y  L+ VY++  RWND   +
Sbjct: 600 TVVWGSLLAACRVRKNADLA---ELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARI 656

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
            KL  DK V KE G S   +    H F A D  HPQ   I      + E++K  G+ PD 
Sbjct: 657 WKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDL 716

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           + + + D  D+ K+  L  HSE+LAIA G+++      +R+ KNLRVC DCH   K IS+
Sbjct: 717 N-SVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISK 775

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           + + EIIVRD  RFHHF+DG CSC DYW
Sbjct: 776 VVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 203/462 (43%), Gaps = 71/462 (15%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
            A+ L   +P   +    ++ ++  +A    L  A  VF Q+   ++ +W  ++    R+
Sbjct: 82  EARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRA 141

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
                 A+  F  M+ +G + P +      L +CA   A   G++ H+ + K GL S V 
Sbjct: 142 -GRFWDAVKTFLDMVGEG-LAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVP 199

Query: 172 INNSLIHFYASC-------------------------------GHLDLANKVFDNMLERS 200
           + NS+++ Y  C                               G +DLA  +F+NM ERS
Sbjct: 200 VANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERS 259

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAH 258
           +VSWN +I  + Q G  D ALK F RM      EPD +T  S+ SACA L  L +G   H
Sbjct: 260 IVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMH 319

Query: 259 AYILRH----------------------------CDHSLVTD--VLVNNSLIDMYCKCGS 288
           +YILR                              D ++V D  V+   +L++ Y K G 
Sbjct: 320 SYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGD 379

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
              AR+VF+ M  RD+ +W ++I+G+  +G+ + A++ F R ++     PNS T   VLS
Sbjct: 380 TKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELF-RSMIRSGPEPNSHTLAAVLS 438

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           AC     +  G+      I       V      ++ + AR+G++  A  +   +  + + 
Sbjct: 439 ACASLAYLGYGKQIHCRAIRSLQEQSV-SVSNAIITVYARSGSVPLARRVFDQICWRKET 497

Query: 409 VIWRSLLDACCK---KHASVVLSEEVAKQVIESEGGICSGVY 447
           V W S++ A  +      ++VL EE+ +  ++ +     GV+
Sbjct: 498 VTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVF 539



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 129/317 (40%), Gaps = 73/317 (23%)

Query: 152 SQGKQAHAHIFKRGLVSDVYIN-------------------------------------N 174
           S G+  HAH  K GL+   Y+                                      N
Sbjct: 42  SAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWN 101

Query: 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEP 233
           SL+  YA  G L  A  VF  M ER  VSW VM+    + G F  A+K F  M      P
Sbjct: 102 SLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAP 161

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
             +   ++ S+CA      +G   H+++++     L + V V NS++ MY KCG  + AR
Sbjct: 162 SQFMLTNVLSSCAATEARGIGRKVHSFVIK---LGLSSCVPVANSVLYMYGKCGDAETAR 218

Query: 294 QV-------------------------------FESMPKRDLTSWNSIILGFALHGRAEA 322
            V                               FE+M +R + SWN+II G+  +G  + 
Sbjct: 219 AVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDM 278

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
           ALK+F R++   S  P+  T   VLSAC +  M+  G+     ++    +    +    L
Sbjct: 279 ALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRT-GMPYSSQIMNAL 337

Query: 383 VDLLARAGNIDEALHLV 399
           +   A++G+++ A  ++
Sbjct: 338 ISTYAKSGSVETARRIM 354



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 152/353 (43%), Gaps = 39/353 (11%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL--LIYS-----------RIIHFASF 80
           +S+LS+    + +   KQ+H+  LRT +P   + +  LI +           RI+  A  
Sbjct: 300 TSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVV 359

Query: 81  ADLDY------------------AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
           ADL+                   A  VF  + N +   W  +I    ++     +A+ LF
Sbjct: 360 ADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQN-GQNDEAMELF 418

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           + MI  G   P+ HT    L ACA L     GKQ H    +      V ++N++I  YA 
Sbjct: 419 RSMIRSGPE-PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYAR 477

Query: 183 CGHLDLANKVFDNMLER-SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            G + LA +VFD +  R   V+W  MI A  Q G  + A+ LF  M ++  +PD  T+  
Sbjct: 478 SGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIG 537

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + SAC     +  G   +  +L   +H +V ++     ++D+  + G L  A +  + MP
Sbjct: 538 VFSACTHAGFIDKGKRYYEQMLN--EHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMP 595

Query: 301 -KRDLTSWNSIILGFALHGRAEAALKYFDRLV-VEESFSPNSITFVGVLSACN 351
              D   W S++    +   A+ A    ++L+ ++   S        V SAC 
Sbjct: 596 VAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACG 648


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 310/576 (53%), Gaps = 32/576 (5%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR---------VFYQIENPNSFTW 101
           QIH+ A+R            Y  +  F S A LD  F+         +F ++ N N   W
Sbjct: 139 QIHSLAIRFG----------YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAW 188

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N ++      +D +P   +     + +   LP+  +      ACA     S G+Q H  +
Sbjct: 189 NAVMTNAV--LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFV 246

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K G   DV + NS++ FY  C     A  VFD M  R+ VSW  M+ A+ Q G  + A 
Sbjct: 247 VKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAF 306

Query: 222 KLF---RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
             +   RR     EP  +   S  + CAGL  L LG   HA  +R C   +  ++ V ++
Sbjct: 307 AAYLGARRSGE--EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC---IDANIFVASA 361

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+DMY KCG ++ A Q+F   P+R+L +WN++I G+A  G A+ AL  FD ++     +P
Sbjct: 362 LVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAP 421

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N IT V V+++C+  G+  +G + F+ M   + I P  EHY C+VDLL RAG  ++A  +
Sbjct: 422 NYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEV 481

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MPM+P   +W +LL A CK H    L    A+++ E +    SG +VLLS ++ASA 
Sbjct: 482 IQGMPMRPSISVWGALLGA-CKMHGKTELGRIAAEKLFELDPQD-SGNHVLLSNMFASAG 539

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW +   +RK M + G+ K+PGCS +    + H F A DT H    +I   L  + ++++
Sbjct: 540 RWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQ 599

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           + GY PD +Q ++ D  ++ K+S +  HSE+LA+A G++ + PG+PIR+ KNLR+C DCH
Sbjct: 600 AAGYMPD-TQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCH 658

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              K IS I   EIIVRD  RFHHFK   CSC DYW
Sbjct: 659 RAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 5/164 (3%)

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG  AHA  LR    +L   +  +  L+++Y K      A     S P   + S+ + I 
Sbjct: 33  LGRAAHARALRLIAPALSPFICAH--LVNLYSKLDLPAAAAAALASDPHPTVVSYTAFIS 90

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G A HGR   AL  F  + +     PN  TF     A       S        +   +  
Sbjct: 91  GAAQHGRPLPALSAFAGM-LRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGY 149

Query: 373 TPVLEHYGC-LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            PV     C  +D+  + G +  A HL   MP + + V W +++
Sbjct: 150 LPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNR-NVVAWNAVM 192


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 312/571 (54%), Gaps = 24/571 (4%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNS----FTWNTLI 105
           KQ+H    +T    +    +  S I  +   + +D A ++F   ENP S      +N+L+
Sbjct: 30  KQLHCHVFKTGCLLE--PFVQTSLISMYGKCSLIDNARKLFD--ENPQSRKLTVCYNSLL 85

Query: 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165
              A +   K   +VLF  M E G V  +  T    ++ C        G   H    K G
Sbjct: 86  SGYALNSRVK-DVVVLFCEMRELG-VEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFG 143

Query: 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR 225
           L  D  + N L+  Y   G +D   K+FD M  + L++WN MI+ + Q G  ++ L+L++
Sbjct: 144 LDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYK 203

Query: 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284
            M+   F PD  T   + S+CA L  LS+G      +         ++  +NN+L++MY 
Sbjct: 204 EMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKME---GFGFSSNPFLNNALVNMYA 260

Query: 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           +CG+L  AR +F+ MP + + SW +II G+ +HG+ E A+  FD ++      P+   FV
Sbjct: 261 RCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMI-RGGIKPDGTAFV 319

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            VLSAC+H G+ ++G DYF VM  +Y + P  EHY C+VDLL RAG ++EA  L+ +M +
Sbjct: 320 SVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQV 379

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           + D  +W +LL A CK H +V L+E   +QVIE E    +G YVLLS VY  A     + 
Sbjct: 380 RADGALWGALLGA-CKIHRNVELAELAFEQVIELE-PTNTGYYVLLSNVYTEAGNLEGIL 437

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
            VR LM  + + K+PGCS +E  G  H FFAGD +HPQT +IY  L+ ++  +K      
Sbjct: 438 RVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVK------ 491

Query: 525 DYSQAAMVD-ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
           D       D E  +   +S+ +HSE+LA+A  +LN +    I + KNLR+C DCH   KL
Sbjct: 492 DLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKL 551

Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +S+I + + +VRD  RFHHFK+G CSC +YW
Sbjct: 552 VSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 164/315 (52%), Gaps = 14/315 (4%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P+  TFPFA+K+CA L     GKQ H H+FK G + + ++  SLI  Y  C  +D A K+
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67

Query: 193 FD-NMLERSL-VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLA 249
           FD N   R L V +N ++  +         + LF  M+ L  E +G T   +   C    
Sbjct: 68  FDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPG 127

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L LGM  H + ++     L  D  V N L+ MY K G +D  R++F+ MP++ L +WN+
Sbjct: 128 NLGLGMCVHGFCVK---FGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNA 184

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN- 368
           +I G+A +G A   L+ +  +   + F P+ +T VGVLS+C H G +S G++    M   
Sbjct: 185 MINGYAQNGLANNVLELYKEM-ESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGF 243

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC---CKKHASV 425
            ++  P L +   LV++ AR GN+ +A  +   MP+K   V W +++       +   +V
Sbjct: 244 GFSSNPFLNN--ALVNMYARCGNLKKARDIFDGMPVK-SVVSWTAIIGGYGMHGQGEVAV 300

Query: 426 VLSEEVAKQVIESEG 440
            L +E+ +  I+ +G
Sbjct: 301 GLFDEMIRGGIKPDG 315


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 334/602 (55%), Gaps = 42/602 (6%)

Query: 23  NNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFA 81
           N+R E    + ++L+S   +   MS+ +++  +     +P   + ++ ++ ++  +A   
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDR-----MPG--RDVVSWNIMVSGYARRG 113

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG----NVLPDKHT 137
           D+  A R+F      + FTW  ++   A++             M+E+     + +P+++ 
Sbjct: 114 DMVEARRLFDAAPVRDVFTWTAVVSGYAQN------------GMLEEARRVFDAMPERNA 161

Query: 138 FPFALKACAYL--FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
             +     AY+      + K+    +F      +V   N+++  YA  G L+ A  VFD 
Sbjct: 162 VSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 217

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLG 254
           M ++  VSW  M+ A+ Q G  +  L+LF  M    E  +   F  + S CA +A L  G
Sbjct: 218 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 277

Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
           M  H  ++R           V N+L+ MY KCG+++ AR  FE M +RD+ SWN++I G+
Sbjct: 278 MQLHGRLIRA---GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGY 334

Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
           A HG  + AL+ FD ++   S  P+ IT VGVL+AC+H G+V +G  YF  M +++ +T 
Sbjct: 335 ARHGFGKEALEIFD-MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 393

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
             EHY C++DLL RAG + EA  L+ +MP +PD+ +W +LL A  + H +  L    A++
Sbjct: 394 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS-RIHRNPELGRSAAEK 452

Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
           + E E    +G+YVLLS +YAS+ +W D   +R +M ++GV K PG S IE+    H F 
Sbjct: 453 IFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 511

Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMV--DELDDGKQSSLRLHSERLAI 552
           AGD  HP+ ++IY FL+ +D ++K  GY    S   MV  D  ++ K+  L+ HSE+LA+
Sbjct: 512 AGDCVHPEKEKIYAFLEDLDMRMKKAGYV---SATDMVLHDVEEEEKEHMLKYHSEKLAV 568

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GILN+ PG PIRV KNLRVC DCH   K IS I    I++RD  RFHHF+ GSCSC D
Sbjct: 569 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGD 628

Query: 613 YW 614
           YW
Sbjct: 629 YW 630



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 25/271 (9%)

Query: 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRR 226
           V D    N +I  +A+ G + LA   FD   E+  VSWN M+ A+V+ G  + A  LF  
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS 62

Query: 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
                E D  ++ ++ S       +  G  + A  L   D     DV+  N ++  Y + 
Sbjct: 63  RT---EWDVISWNALMS-----GYVQWGKMSEAREL--FDRMPGRDVVSWNIMVSGYARR 112

Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
           G +  AR++F++ P RD+ +W +++ G+A +G  E A + FD +        N++++  +
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-----ERNAVSWNAM 167

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
           ++A   R M+ E ++ F++M    N+      +  ++   A+AG ++EA  +   MP K 
Sbjct: 168 VAAYIQRRMMDEAKELFNMMPCR-NVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK- 221

Query: 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437
           DAV W ++L A    ++    SEE  +  IE
Sbjct: 222 DAVSWAAMLAA----YSQGGCSEETLQLFIE 248



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 299 MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358
           MP RD  ++N +I   A HG    A  YFD L  E+    +++++ G+L+A    G V E
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFD-LAPEK----DAVSWNGMLAAYVRNGRVEE 55

Query: 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418
            R  F+    E+++      +  L+    + G + EA  L   MP + D V W  ++   
Sbjct: 56  ARGLFNSR-TEWDVIS----WNALMSGYVQWGKMSEARELFDRMPGR-DVVSWNIMVSGY 109

Query: 419 CKK 421
            ++
Sbjct: 110 ARR 112


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 309/530 (58%), Gaps = 23/530 (4%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           +F ++   N  +W T+I    ++     Q + + +++ E   V+P+K+   +     A L
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQN-----QQVDIARKLFE---VMPEKNEVSWT----AML 322

Query: 149 FAFSQ-GKQAHA-HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNV 206
             ++  G+   A  +F    +  V   N++I  +   G +  A +VFD M E+   +W+ 
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 207 MIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
           MI  + + G    AL+LFR MQ     P+  +  S+ S CAGLA L  G   HA ++R  
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS- 441

Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325
                 DV V + L+ MY KCG+L  A+QVF+    +D+  WNSII G+A HG    AL+
Sbjct: 442 --QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALR 499

Query: 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385
            F  +       P+ +TFVGVLSAC++ G V +G + F+ M  +Y +   +EHY C+VDL
Sbjct: 500 VFHDMHFS-GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDL 558

Query: 386 LARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445
           L RAG ++EA+ L+  MPM+ DA+IW +LL AC + H  + L+E  AK+++  E    +G
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLGAC-RTHMKLDLAEVAAKKLLVLEPK-NAG 616

Query: 446 VYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS-HPQTK 504
            ++LLS +YAS  RW+DV  +R+ M D+ V+K PGCS I ++   H+F  GD+S HP+  
Sbjct: 617 PFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHS 676

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMP 564
           +I   L+ +   L+  GY PD S   + D  ++ K  SL  HSE+LA+A G+L +  GMP
Sbjct: 677 EINRILEWLSGLLREAGYYPDQS-FVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMP 735

Query: 565 IRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           IRV KNLRVC DCH   KLI+++   EII+RD  RFHHFKDGSCSC DYW
Sbjct: 736 IRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 147/331 (44%), Gaps = 15/331 (4%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLD 84
           +NE S+   +++L   T C  + +     A  L  A+P +   +   + I+ F    ++ 
Sbjct: 313 KNEVSW---TAMLKGYTNCGRLDE-----ASELFNAMPIK-SVVACNAMILCFGQNGEVP 363

Query: 85  YAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144
            A +VF Q+   +  TW+ +I+   R    +  A+ LF RM+++  + P+  +    L  
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERK-GLELDALELF-RMMQREGIRPNFPSLISVLSV 421

Query: 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSW 204
           CA L     G++ HA + +     DVY+ + L+  Y  CG+L  A +VFD    + +V W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 205 NVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           N +I  + Q G    AL++F  M      PD  TF  + SAC+    +  G+    +   
Sbjct: 482 NSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL--EIFNSM 539

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEA 322
              + +   +     ++D+  + G L+ A  + E MP + D   W +++     H + + 
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
           A     +L+V E  +      +  + A   R
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGR 630



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 152/353 (43%), Gaps = 68/353 (19%)

Query: 72  SRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGN 130
           S I  ++    ++ A  VF ++ + N  +WN+++    +  + +PQ A  +F +M E+  
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQ--NKRPQEAQNMFDKMSERNT 160

Query: 131 VLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190
           +  +                              GLVS  YINN +I         + A 
Sbjct: 161 ISWN------------------------------GLVSG-YINNGMI---------NEAR 180

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250
           +VFD M ER++VSW  M+  +V+ G    A  LF +M     P+     S T    GL  
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-----PEKNVV-SWTVMLGGL-- 232

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L  G    A   R  D     DV+   ++I  YC+ G L  AR +F+ MP+R++ SW ++
Sbjct: 233 LQEGRIDEA--CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTM 290

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+  + + + A K F+  V+ E    N +++  +L    + G + E  + F+ M    
Sbjct: 291 ITGYVQNQQVDIARKLFE--VMPEK---NEVSWTAMLKGYTNCGRLDEASELFNAM---- 341

Query: 371 NITPVLEHYGC--LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
              P+     C  ++    + G + +A  +   M  K D   W +++    +K
Sbjct: 342 ---PIKSVVACNAMILCFGQNGEVPKARQVFDQMREK-DEGTWSAMIKVYERK 390



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 11/143 (7%)

Query: 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           ++  NSLI  Y + G ++ AR VF+ M  +++ SWNSI+ G+  + R + A   FD++  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
                 N+I++ G++S   + GM++E R+ FD M  E N+      +  +V    + G I
Sbjct: 157 ----ERNTISWNGLVSGYINNGMINEAREVFDRM-PERNVVS----WTAMVRGYVKEGMI 207

Query: 393 DEALHLVSNMPMKPDAVIWRSLL 415
            EA  L   MP K + V W  +L
Sbjct: 208 SEAETLFWQMPEK-NVVSWTVML 229


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/585 (35%), Positives = 327/585 (55%), Gaps = 17/585 (2%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRVFYQ 92
           ++LLS+          +Q+H   L+T        + + + ++ + S  D +D   ++FY+
Sbjct: 245 AALLSAAVGLDDTKFGQQVHGFVLKTNFVWN---VFVGNALLDYYSKHDQVDEVGKLFYE 301

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA--LKACAYLFA 150
           +   +  ++N +I + A +   K ++  LF+++        D+  FPFA  L        
Sbjct: 302 MPELDGISYNVVITSYAWNGQFK-ESFDLFRKL---QFTRFDRRQFPFATLLSIATSSLN 357

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              G+Q H      G   +  + N+L+  YA C     A K+FDN+  +S V W  MI A
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 211 FVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
           +VQ G+ +  + +F  M+    P D  TF SI  ACA LA++SLG   H+ ++R      
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS---GF 474

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
           +++V   ++L+D Y KCG +  A + F  MP+R+  SWN++I  +A +G  +  L  F +
Sbjct: 475 MSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQ 534

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++ +  + P+S++F+ VLSAC+H G V E   +F+ M   Y +TP  EHY  +VD+L R 
Sbjct: 535 MI-QSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRN 593

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449
           G  DEA  L++ MP +P  ++W S+L++C + H +  L+++ A ++   E    +  Y+ 
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSC-RIHKNHELAKKAADRLFNMEDLRDAAPYIN 652

Query: 450 LSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           +S +YA A +W++V  V+K M D+GV K P  S +EI    H F A D SHP+ K+I   
Sbjct: 653 MSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRK 712

Query: 510 LDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFK 569
           ++ + ++++ +GY PD +  A+ D  +  K  SL+ HSER AIA  ++N   G PI V K
Sbjct: 713 INALSKEMEKKGYKPD-TTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMK 771

Query: 570 NLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           NLR C DCH   K+IS+I   EIIVRD +RFHHFKDG CSC DYW
Sbjct: 772 NLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 192/421 (45%), Gaps = 48/421 (11%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +LLS   E ++ + + QIH   ++  L  ++  ++  S +  +     L  A ++F  + 
Sbjct: 145 TLLSGFGELETKNVIVQIHTHVIK--LGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHML 202

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           N ++ T+N+L+   +       +AI LF  +   G + P   TF   L A   L     G
Sbjct: 203 NKDTVTFNSLMTGYSNE-GLNEEAIELFLELHNSG-IKPSDFTFAALLSAAVGLDDTKFG 260

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +Q H  + K   V +V++ N+L+ +Y+    +D   K+F  M E   +S+NV+I ++   
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWN 320

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-- 271
           G+F  +  LFR++Q   F+   + F ++ S    +AT SL +     I  HC    V   
Sbjct: 321 GQFKESFDLFRKLQFTRFDRRQFPFATLLS----IATSSLNLRMGRQI--HCQAITVGAN 374

Query: 272 -DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V N+L+DMY KC     A+++F+++  +    W ++I  +   G+ E  +  F  +
Sbjct: 375 FESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDM 434

Query: 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI------NEYNITPVLEHY---GC 381
                   +  TF  +L AC +   +S GR    ++I      N Y+ + +L+ Y   GC
Sbjct: 435 -RRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGC 493

Query: 382 LVDLL---------------------ARAGNIDEALHLVSNM---PMKPDAVIWRSLLDA 417
           + D +                     A+ GN+D  L+    M     KPD+V + S+L A
Sbjct: 494 MTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSA 553

Query: 418 C 418
           C
Sbjct: 554 C 554



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 190/427 (44%), Gaps = 28/427 (6%)

Query: 5   IVQGGP-PTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQ-------IHAQA 56
           +++  P P P  +S+ + + +  +  FN ++        C+S  Q+         +HA  
Sbjct: 13  VLRNSPAPKPSLNSNHLIDAHIVKTGFNPNT--------CRSNFQVNNFLERGDLVHAHQ 64

Query: 57  LRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP 116
           +   +P ++ T+ +   I     F  L  A  +F  +    + +W  LI    +S  +K 
Sbjct: 65  VFDQMPAKN-TISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSK- 122

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           +A  L+  M  +G + PD  T    L     L   +   Q H H+ K G   ++ + NSL
Sbjct: 123 EAFRLYADM-RRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSL 181

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDG 235
           +  Y     L LA+++F +ML +  V++N ++  +   G  + A++LF  +     +P  
Sbjct: 182 VDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSD 241

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
           +TF ++ SA  GL     G   H ++L+    + V +V V N+L+D Y K   +D   ++
Sbjct: 242 FTFAALLSAAVGLDDTKFGQQVHGFVLK---TNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
           F  MP+ D  S+N +I  +A +G+ + +   F +L     F      F  +LS       
Sbjct: 299 FYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTR-FDRRQFPFATLLSIATSSLN 357

Query: 356 VSEGRD-YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL 414
           +  GR  +   +    N    +E+   LVD+ A+     EA  +  N+  K   V W ++
Sbjct: 358 LRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKIFDNIACK-STVPWTAM 414

Query: 415 LDACCKK 421
           + A  +K
Sbjct: 415 ISAYVQK 421


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 308/579 (53%), Gaps = 47/579 (8%)

Query: 74  IIHFASFADLDYAFRVFYQIENP----NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129
           I  FA    +     +FYQ  +     N  +WN +I    RS  +   A+++FQ M  +G
Sbjct: 147 ISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRS-GSYLDAVLMFQNMHLEG 205

Query: 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG----- 184
            + PD  +    L A   L     G Q H ++ K+GL  D ++ ++LI  Y  C      
Sbjct: 206 -LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEM 264

Query: 185 --------HLDLA-----------NKVFDNMLE---------RSLVSWNVMIDAFVQFGE 216
                    +D+            N + DN LE          ++VSW  MI +  Q G+
Sbjct: 265 SGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGK 324

Query: 217 FDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
              AL+LFR MQI   +P+  T   +  AC  +A L  G  AH + LR+    +  DV V
Sbjct: 325 DMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN---GIFNDVYV 381

Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
            ++LIDMY KCG +  +R  F+ MP R+L SWNS++ G+A+HG+   A+  F+ L+    
Sbjct: 382 GSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFE-LMQRCG 440

Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
             P+ ++F  VLSAC   G+  EG  YFD M   + +   +EHY C+V LL R+G ++EA
Sbjct: 441 QKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEA 500

Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
             ++  MP +PD+ +W +LL +C + H  V L E  AK+V E E     G Y+LLS +YA
Sbjct: 501 YAMIKQMPFEPDSCVWGALLSSC-RVHNRVDLGEIAAKRVFELEPRN-PGNYILLSNIYA 558

Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
           S   W +V +VR +M  +G+ K PG S IEI    H   AGD+SHPQ  QI   L  +  
Sbjct: 559 SKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTV 618

Query: 516 KLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCK 575
           ++K  GY P ++   + D  +  K+  L  HSE+LA+ LG+LN KPG P++V KNLR+C+
Sbjct: 619 EMKKSGYVP-HTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICR 677

Query: 576 DCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           DCH V K IS     EI VRD  RFH FK G CSC DYW
Sbjct: 678 DCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 165/406 (40%), Gaps = 94/406 (23%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRT--ALPQQHKTLLIYSRIIHFASFADLDYAF 87
           F N S  L S T+    + L Q HA  L+T  +LP+   T+ I+S++ HF          
Sbjct: 13  FENFSHCLCSATK----ASLSQAHAHILKTGISLPE---TIQIFSKLNHFG--------- 56

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
                                          I +F  M+ QG ++PD    P  +K CA 
Sbjct: 57  -----------------------------HVIRVFSYMLTQG-IVPDSRVLPTVIKTCAA 86

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM----------- 196
           L A   GKQ H      GL  D  + +SL+H Y    HL  A  VFD +           
Sbjct: 87  LSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSAL 146

Query: 197 ------------------------LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-F 231
                                   +E +LVSWN MI  F + G +  A+ +F+ M +   
Sbjct: 147 ISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGL 206

Query: 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291
           +PDG +  S+  A   L    +G+  H Y+++     L  D  V ++LIDMY KC     
Sbjct: 207 KPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK---QGLGPDKFVVSALIDMYGKCACASE 263

Query: 292 ARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
              VF  M + D+ + N+++ G + +G  + AL+ F +    +    N +++  ++++C+
Sbjct: 264 MSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQF---KGMDLNVVSWTSMIASCS 320

Query: 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
             G   E  + F     E  I  V  +   +  LL   GNI   LH
Sbjct: 321 QNGKDMEALELF----REMQIEGVKPNSVTIPCLLPACGNIAALLH 362



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 123/311 (39%), Gaps = 66/311 (21%)

Query: 156 QAHAHIFKRG--LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213
           QAHAHI K G  L   + I + L HF    GH+    +VF  ML + +V           
Sbjct: 30  QAHAHILKTGISLPETIQIFSKLNHF----GHVI---RVFSYMLTQGIV----------- 71

Query: 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
                              PD     ++   CA L+ L  G   H + L      L  D 
Sbjct: 72  -------------------PDSRVLPTVIKTCAALSALQTGKQMHCFALVS---GLGLDS 109

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           +V +SL+ MY +   L  AR VF+ +P+  + + +++I  FA  GR +   + F +   +
Sbjct: 110 VVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQ-TRD 168

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFD--VMINEYNITPVLEHYGCLVDLLARAGN 391
                N +++ G++S  N  G       Y D  +M    ++  +      +  +L   G+
Sbjct: 169 LGVELNLVSWNGMISGFNRSG------SYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGD 222

Query: 392 IDEALH------LVSNMPMKPDAVIWRSLLD----ACCKKHASVVLSEEVAKQVIESEGG 441
           +D  L        V    + PD  +  +L+D      C    S V +E     + E + G
Sbjct: 223 LDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNE-----MDEVDVG 277

Query: 442 ICSGVYVLLSR 452
            C+ +   LSR
Sbjct: 278 ACNALVTGLSR 288


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 328/604 (54%), Gaps = 28/604 (4%)

Query: 27  EGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL 83
           EG   N  +   +L  C S++ L   + IH + L + +PQ    +L  S +  +    ++
Sbjct: 105 EGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQD--DVLQDSLLNMYLKCDEM 162

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
             A +VF  ++  N  ++  +I A  ++ +   +A+ LF RM +   + P+ +TF   L 
Sbjct: 163 VEARKVFEGMKARNVRSYTAMISAYVQAGE-HAEALELFSRMSKVEAIEPNAYTFATILG 221

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
           A   L    +G++ H H+  RG  ++V + N+L+  Y  CG    A KVFD+M  R+++S
Sbjct: 222 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 281

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           W  MI A+ Q G    AL LF+RM +  EP G +F S  +ACA L  L  G   H  ++ 
Sbjct: 282 WTSMIAAYAQHGNPQEALNLFKRMDV--EPSGVSFSSALNACALLGALDEGREIHHRVV- 338

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
               + +    +  SL+ MY +CGSLD AR+VF  M  RD  S N++I  F  HGR + A
Sbjct: 339 ---EAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQA 395

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
           L+ + R+  +E    + ITFV VL AC+H  +V++ RD+F  ++ ++ + P++EHY C+V
Sbjct: 396 LRIYRRME-QEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMV 454

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC 443
           D+L R+G + +A  LV  MP + DAV W +LL   CK+H  +   E  A++V E      
Sbjct: 455 DVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSG-CKRHGDLNRGERAARKVFELAPAE- 512

Query: 444 SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQT 503
           +  YV LS +YA+A+R++D   VRK M ++GVT     S IEID   H F +G     Q 
Sbjct: 513 TLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQE 572

Query: 504 -------KQIYGFLDLIDEKLKSRGYTPDYSQAAMVDE---LDDGKQSSLRLHSERLAIA 553
                  +++   L  + E +K  GY PD  +  +  +    ++ KQ SL  HSERLAIA
Sbjct: 573 GHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCFHSERLAIA 632

Query: 554 LGILNLK---PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
            G++  K      P+RV  + RVC DCH   KL+S I    I VRD  RFHHF+ G+CSC
Sbjct: 633 YGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSC 692

Query: 611 MDYW 614
            D+W
Sbjct: 693 GDHW 696



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 206/378 (54%), Gaps = 23/378 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQ----ALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
           +SL+++ T+ +++ + +++H        RT +P +   L +Y++         LD A RV
Sbjct: 14  TSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKC------GSLDDAKRV 67

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
           F  +E  + F W+++I A AR+   +  A+VL++RMI +G V P+  TF  AL  CA + 
Sbjct: 68  FEGMEIKDLFAWSSIISAYARAGRGE-MAVVLYRRMIAEG-VEPNVVTFACALGGCASVA 125

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
             + G+  H  I    +  D  + +SL++ Y  C  +  A KVF+ M  R++ S+  MI 
Sbjct: 126 GLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMIS 185

Query: 210 AFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
           A+VQ GE   AL+LF RM  +   EP+ YTF +I  A  GL  L  G   H ++      
Sbjct: 186 AYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL---ASR 242

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
              T+V+V N+L+ MY KCGS   AR+VF+SM  R++ SW S+I  +A HG  + AL  F
Sbjct: 243 GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLF 302

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387
            R+ VE    P+ ++F   L+AC   G + EGR+    ++  +  +P +E    L+ + A
Sbjct: 303 KRMDVE----PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYA 356

Query: 388 RAGNIDEALHLVSNMPMK 405
           R G++D+A  + + M  +
Sbjct: 357 RCGSLDDARRVFNRMKTR 374



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 34/324 (10%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185
           +E+  ++ DK      + AC  L A  +G++ H H+   G  +D+ +  +L+  YA CG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 186 LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSA 244
           LD A +VF+ M  + L +W+ +I A+ + G  + A+ L+RRM     EP+  TF      
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
           CA +A L+ G   H  IL      +  D ++ +SL++MY KC  +  AR+VFE M  R++
Sbjct: 121 CASVAGLADGRAIHQRIL---ASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNV 177

Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY-- 362
            S+ ++I  +   G    AL+ F R+   E+  PN+ TF  +L A    G + +GR    
Sbjct: 178 RSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHR 237

Query: 363 ------FDVMINEYNI---------TPVLEH-------------YGCLVDLLARAGNIDE 394
                 FD  +   N          +PV                +  ++   A+ GN  E
Sbjct: 238 HLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQE 297

Query: 395 ALHLVSNMPMKPDAVIWRSLLDAC 418
           AL+L   M ++P  V + S L+AC
Sbjct: 298 ALNLFKRMDVEPSGVSFSSALNAC 321


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/551 (36%), Positives = 309/551 (56%), Gaps = 34/551 (6%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRA--CARSVDAKPQAIVLFQRMIEQGNVLPD 134
           ++   +++ A  +F QI  P+  ++N +I    C    ++   ++ LF+ ++  G  +  
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETES---SVRLFKELLVSGEKVNS 308

Query: 135 KHT-------FPFA---LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
                     FPF    L  C            H    K G+VS+  ++ +L   Y+   
Sbjct: 309 SSIVGLIPVFFPFGHLHLTRCI-----------HGFCTKSGVVSNSSVSTALTTVYSRLN 357

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITS 243
            ++ A  +FD   E+SL SWN MI  + Q G  + A+ LF+ MQ     P+  T  SI S
Sbjct: 358 EIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILS 417

Query: 244 ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD 303
           ACA L  LSLG W H  I R    S  +++ V+ +LIDMY KCGS+  A+++F  MP+++
Sbjct: 418 ACAQLGALSLGKWVHDLINRE---SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKN 474

Query: 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363
             +WN++I G+ LHG    AL  F+ ++     SP  +TF+ VL AC+H G+V EG + F
Sbjct: 475 AVTWNAMISGYGLHGYGHEALNLFNEML-HSRVSPTGVTFLSVLYACSHAGLVREGDEIF 533

Query: 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423
             M++++   P+ EHY C+VDLL RAGN+D+AL  +  MP++P   +W +LL AC   H 
Sbjct: 534 RSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGAC-MIHK 592

Query: 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSS 483
              L+   + ++ E +     G YVLLS +Y++ + + +   VR ++  + + K PGC+ 
Sbjct: 593 DANLARLASDKLFELDPQNV-GYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTL 651

Query: 484 IEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSL 543
           IE+    H F +GD SHPQ   IY  L+ +  K++  G+  + +  A+ D  ++ K+  +
Sbjct: 652 IEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTE-TGTALHDVEEEEKELMV 710

Query: 544 RLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHF 603
           ++HSE+LAIA G++  +PG  IR+ KNLRVC DCH  TK IS+I    I+VRD  RFHHF
Sbjct: 711 KVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHF 770

Query: 604 KDGSCSCMDYW 614
           KDG CSC DYW
Sbjct: 771 KDGICSCGDYW 781



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 150/316 (47%), Gaps = 17/316 (5%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIE 94
            L+ +    ++ QL Q HAQ +   L   H  L+  +++ H  +    +D A  +F  I 
Sbjct: 13  FLTLINRVSTLHQLNQTHAQIILNGL---HNDLVTVTKLTHKLSHLKAIDQASLLFSTIP 69

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           NP+ F +N LIRA + + ++   A+ L+  + +   + PD  T+ F +   + L      
Sbjct: 70  NPDLFLYNVLIRAFSLN-NSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLL 128

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
                     G  SD+++ ++++  Y     +  A KVFD MLER  V WN M+   V+ 
Sbjct: 129 HAHS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 215 GEFDSALKLFRRM---QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
             FD A+ +F  M    I F  D  T  ++    A L  L+LGM      ++   HS   
Sbjct: 186 SCFDEAILIFGDMVKGGIGF--DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHS--- 240

Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
              V   L  +Y KCG ++ AR +F  + + DL S+N++I G+  +   E++++ F  L+
Sbjct: 241 HAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELL 300

Query: 332 VEESFSPNSITFVGVL 347
           V      NS + VG++
Sbjct: 301 VSGE-KVNSSSIVGLI 315


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 303/573 (52%), Gaps = 45/573 (7%)

Query: 78  ASFADLDYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKH 136
           A    +D A  +F  + +    +WN +I    ++ ++AK  A+  F RM+    + PD+ 
Sbjct: 239 AHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAK--ALWFFSRMLSYSTMAPDEF 296

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV---- 192
           T    L ACA L   S GKQ HA+I +  +     + N+LI  YA  G ++ A  V    
Sbjct: 297 TITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQA 356

Query: 193 -----------------------------FDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
                                        FD M  R +V+W  MI  + Q G  D A++L
Sbjct: 357 VMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMEL 416

Query: 224 FRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           FR M +   EP+ YT  ++ S CA LA L  G   H   +R       +   V+NS++ M
Sbjct: 417 FRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSS---VSNSIVTM 473

Query: 283 YCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           Y + GSL  AR+VF+ +  +++  +W S+I+  A HG  E A+  F+ ++      P+ I
Sbjct: 474 YARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEML-RVGVKPDRI 532

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           TFVGVLSAC H G V EG+ YF  + +++ I P + HY C+VDLLARAG   EA   +  
Sbjct: 533 TFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQ 592

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MP++PDA+ W SLL AC + H +  L+E  A++++  + G  SG Y  LS VY++  RWN
Sbjct: 593 MPVEPDAIAWGSLLSAC-RVHKNADLAELAAEKLLSIDPG-NSGAYSALSNVYSACGRWN 650

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
           D   + K   DK V KE G S   I    H F A D  HPQ   +Y     + + +K  G
Sbjct: 651 DAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAG 710

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           + PD  Q+ + D  D+ K+  L  HSE+LAIA G+++      +R+ KNLRVC DCH   
Sbjct: 711 FVPDL-QSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAI 769

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K IS++ + EII+RD  RFHHFKDG CSC DYW
Sbjct: 770 KFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 191/436 (43%), Gaps = 76/436 (17%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARS 111
            A+ L   +P   + +  ++ ++  +A    L  A  VF ++   +  +W  ++    R 
Sbjct: 81  EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNR- 139

Query: 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY 171
           V    +AI +F  M+  G + P + T    L +CA   A   G++ H+ + K GL S V 
Sbjct: 140 VGRFGEAIKMFLDMVTDG-LSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVP 198

Query: 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---- 227
           + NS+++ Y  CG  + A  VF+ M ERS+ SWN M+      G  D AL LF  M    
Sbjct: 199 VANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRT 258

Query: 228 -------------------------QIL----FEPDGYTFQSITSACAGLATLSLGMWAH 258
                                    ++L      PD +T  S+ SACA L  +S+G   H
Sbjct: 259 IVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVH 318

Query: 259 AYILR-------HCDHSLVT-----------------------DVLVNNSLIDMYCKCGS 288
           AYILR          ++L++                       +V+   +L++ Y K G 
Sbjct: 319 AYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGD 378

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +  AR++F+ M  RD+ +W ++I+G+  +G  + A++ F RL++     PNS T   VLS
Sbjct: 379 MKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELF-RLMIRSGPEPNSYTVAAVLS 437

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPM 404
            C     +  G+      I+   I  + E        +V + AR+G++  A  +   +  
Sbjct: 438 VCASLACLEYGKQ-----IHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHW 492

Query: 405 KPDAVIWRSLLDACCK 420
           + + V W S++ A  +
Sbjct: 493 RKETVTWTSMIVALAQ 508



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 87/361 (24%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF---------------------- 179
           L+ C        G+  HA   K GL++  Y+ N+L+ +                      
Sbjct: 30  LQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEI 89

Query: 180 ----------------YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKL 223
                           YA  G L  A  VF  M ER  VSW VM+    + G F  A+K+
Sbjct: 90  PAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKM 149

Query: 224 FRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDM 282
           F  M      P  +T  ++ S+CA      +G   H+++++     L + V V NS+++M
Sbjct: 150 FLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVK---LGLSSCVPVANSVLNM 206

Query: 283 YCKCGSLDIARQVFESMPKRDLT-------------------------------SWNSII 311
           Y KCG  + AR VFE MP+R ++                               SWN++I
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+  +G    AL +F R++   + +P+  T   VLSAC + GMVS G+      ++ Y 
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ-----VHAYI 321

Query: 372 ITPVLEHYG----CLVDLLARAGNIDEALHLVSNMPMKPDAVI-WRSLLDACCK----KH 422
           +   + + G     L+ + A++G+++ A  ++    M    VI + +LL+   K    KH
Sbjct: 322 LRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKH 381

Query: 423 A 423
           A
Sbjct: 382 A 382



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 41/354 (11%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALP---QQHKTLL-IYSR---------------- 73
           +S+LS+      +S  KQ+HA  LR+ +P   Q    L+ +Y++                
Sbjct: 299 TSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVM 358

Query: 74  ----IIHFAS-------FADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
               +I F +         D+ +A  +F  + N +   W  +I    ++     +A+ LF
Sbjct: 359 ADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQN-GHNDEAMELF 417

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           + MI  G   P+ +T    L  CA L     GKQ H    +        ++NS++  YA 
Sbjct: 418 RLMIRSGPE-PNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYAR 476

Query: 183 CGHLDLANKVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            G L  A +VFD +   +  V+W  MI A  Q G  + A+ LF  M ++  +PD  TF  
Sbjct: 477 SGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVG 536

Query: 241 ITSACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
           + SAC  +  +  G     Y  +  D H +V ++     ++D+  + G    A++  + M
Sbjct: 537 VLSACTHVGFVDEG---KRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQM 593

Query: 300 P-KRDLTSWNSIILGFALHGRAEAALKYFDRLV-VEESFSPNSITFVGVLSACN 351
           P + D  +W S++    +H  A+ A    ++L+ ++   S        V SAC 
Sbjct: 594 PVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACG 647


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 310/576 (53%), Gaps = 32/576 (5%)

Query: 51  QIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR---------VFYQIENPNSFTW 101
           QIH+ A+R            Y  +  F S A LD  F+         +F ++ N N   W
Sbjct: 32  QIHSLAIRFG----------YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAW 81

Query: 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161
           N ++      +D +P   +     + +   LP+  +      ACA     S G+Q H  +
Sbjct: 82  NAVMTNAV--LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFV 139

Query: 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221
            K G   DV + NS++ FY  C     A  VFD M  R+ VSW  M+ A+ Q G  + A 
Sbjct: 140 VKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAF 199

Query: 222 KLF---RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
             +   RR     EP  +   S  + CAGL  L LG   HA  +R C   +  ++ V ++
Sbjct: 200 AAYLGARRSGE--EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC---IDANIFVASA 254

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L+DMY KCG ++ A Q+F   P+R+L +WN++I G+A  G A+ AL  FD ++     +P
Sbjct: 255 LVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAP 314

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           N IT V V+++C+  G+  +G + F+ M   + I P  EHY C+VDLL RAG  ++A  +
Sbjct: 315 NYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEV 374

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MPM+P   +W +LL A CK H    L    A+++ E +    SG +VLLS ++ASA 
Sbjct: 375 IQGMPMRPSISVWGALLGA-CKMHGKTELGRIAAEKLFELDPQD-SGNHVLLSNMFASAG 432

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW +   +RK M + G+ K+PGCS +    + H F A DT H    +I   L  + ++++
Sbjct: 433 RWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQ 492

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
           + GY PD +Q ++ D  ++ K+S +  HSE+LA+A G++ + PG+PIR+ KNLR+C DCH
Sbjct: 493 AAGYMPD-TQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCH 551

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
              K IS I   EIIVRD  RFHHFK   CSC DYW
Sbjct: 552 RAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/474 (39%), Positives = 281/474 (59%), Gaps = 15/474 (3%)

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
           + F     + ++IF  GL  D  I       Y S   +D A+ VF+++       WNVMI
Sbjct: 490 YPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMI 549

Query: 209 DAFVQFGEFDSALKLFRRM-QILFEPDG-------YTFQSITSACAGLATLSLGMWAHAY 260
             F   G F S+L+L+ +M +   +PD         +  S+  AC  L  L  G W H+Y
Sbjct: 550 RGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSY 609

Query: 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320
           +++        D+LV  +++DMY KCGSLD+AR +F+    +DL  W+++I  + +HG  
Sbjct: 610 VIQT---GFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHG 666

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
             A+  FD++V +    P+ +TF  VLSAC+H G++ EG+ YF +M  E+ I   L +Y 
Sbjct: 667 RKAIDLFDQMV-KAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYA 725

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440
           C+VDLL RAG + EA+ L+ NMP++PDA IW SLL AC + H ++ L+E++A  +   + 
Sbjct: 726 CMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGAC-RIHNNLDLAEKIADHLFHLDP 784

Query: 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSH 500
            + +G +VLLS +YA+  RWN+V  VRK+M  +G  K  G S +E D   H+F  GD SH
Sbjct: 785 -VHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSH 843

Query: 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLK 560
           PQ +++Y  L+ +   +K  GY P  +   + D  ++ K+++L  HSERLAIA G++N  
Sbjct: 844 PQWEKLYAKLEELAAPMKHLGYVP-LTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTS 902

Query: 561 PGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PG  +R+ KNLR+C DCH   KLIS+I N  I+VRD  RFH F+DG CSC DYW
Sbjct: 903 PGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 173/386 (44%), Gaps = 49/386 (12%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           L+     C +   + Q+H+Q  +T +   H T         +A  A L  A +VF +  +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGI--LHDTFFATKLNSLYAKCASLQAARKVFDETPH 64

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           PN   WN+ +R+  R    + + + LF  MI      PD  T P ALKACA L     GK
Sbjct: 65  PNVHLWNSTLRSYCREKQWE-ETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK 123

Query: 156 QAHAHIFKRGLV-SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
             H    K   + SD+++ ++L+  Y+ CG +  A KVF+       V W  M+  + Q 
Sbjct: 124 VIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQN 183

Query: 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
            + + AL LF +M ++   DG                                    D+ 
Sbjct: 184 NDPEEALALFSQMVMMDCFDG------------------------------------DLP 207

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           + NSL+++Y K G   IA  +F  MP++D+ SW+++I  +A +  A  AL  F  + +E+
Sbjct: 208 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM-IEK 266

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
            F PNS+T V  L AC     + EG+    + + +  ++ V      L+   A+ G   +
Sbjct: 267 RFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWV-----ALLSGYAQNGMAYK 321

Query: 395 ALHLVSNM---PMKPDAVIWRSLLDA 417
           ++ +  NM    ++PDAV    +L A
Sbjct: 322 SMGVFRNMLSDGIQPDAVAVVKILAA 347



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 15/277 (5%)

Query: 64  QHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAK-PQAIVLF 122
           Q+ + ++    I + SF  +D A  VF  I NP SF WN +IR  A   D +   ++ L+
Sbjct: 508 QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA--TDGRFLSSLELY 565

Query: 123 QRMIEQG------NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
            +M+E+G       V+P++ +    L AC  L A  +G+  H+++ + G   D+ +  ++
Sbjct: 566 SKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAI 625

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           +  Y+ CG LDLA  +FD    + LV W+ MI ++   G    A+ LF +M +    P  
Sbjct: 626 MDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSH 685

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS-LIDMYCKCGSLDIARQ 294
            TF  + SAC+    L  G     Y     +  ++   L N + ++D+  + G L  A  
Sbjct: 686 VTFTCVLSACSHSGLLEEG---KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVD 742

Query: 295 VFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRL 330
           + E+MP + D + W S++    +H   + A K  D L
Sbjct: 743 LIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL 779



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 16/322 (4%)

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H+ +FK G++ D +    L   YA C  L  A KVFD     ++  WN  + ++ +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 216 EFDSALKLFRRMQILF--EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           +++  L+LF  M       PD +T      ACAGL  L LG   H +  +  +  + +D+
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKK--NDEIGSDM 139

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V ++L+++Y KCG +  A +VFE   + D   W S++ G+  +   E AL  F ++V+ 
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           + F  +      +L+     G      + F  M  +  I+     +  ++   A     +
Sbjct: 200 DCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS-----WSTMIACYANNEAAN 254

Query: 394 EALHLVSNMPMK---PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450
           EAL+L   M  K   P++V   S L AC     S  L E      I     + S V  LL
Sbjct: 255 EALNLFHEMIEKRFEPNSVTVVSALQACA---VSRNLEEGKKIHKIAVWKDVVSWV-ALL 310

Query: 451 SRVYASARRWNDVGLVRKLMTD 472
           S    +   +  +G+ R +++D
Sbjct: 311 SGYAQNGMAYKSMGVFRNMLSD 332



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 41/247 (16%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A  +F ++   +  +W+T+I AC  + +A  +A+ LF  MIE+    P+  T   AL+AC
Sbjct: 225 AANLFSKMPEKDVISWSTMI-ACYANNEAANEALNLFHEMIEK-RFEPNSVTVVSALQAC 282

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A      +GK+ H    K  +  DV                               VSW 
Sbjct: 283 AVSRNLEEGKKIH----KIAVWKDV-------------------------------VSWV 307

Query: 206 VMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            ++  + Q G    ++ +FR M     +PD      I +A + L      +  H Y++R 
Sbjct: 308 ALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS 367

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
                 ++V V  SLI++Y KCGSL  A ++F+ M  RD+  W+S+I  + +HGR   AL
Sbjct: 368 ---GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEAL 424

Query: 325 KYFDRLV 331
           + FD+++
Sbjct: 425 EIFDQMI 431


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/501 (40%), Positives = 288/501 (57%), Gaps = 13/501 (2%)

Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
           + + + + M+ + +V  DK TF  A   CA L     G   H  +    +  D Y+++++
Sbjct: 217 EGLEVLRSMVSE-SVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAI 275

Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDG 235
           I+ Y  CG   +A  VFD +  R++V W  ++ +  Q G F+ AL LF +M Q   + + 
Sbjct: 276 INMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNE 335

Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHS-LVTDVLVNNSLIDMYCKCGSLDIARQ 294
           +T+  + +ACAGL+    G   H     H + S     V+V N+LI+MY K G ++ A++
Sbjct: 336 FTYAVLLNACAGLSARRNGSLLHG----HSEKSGFKHHVMVGNALINMYAKSGDIEAAKK 391

Query: 295 VFESMPKRDLTSWNSIILGFALHGRAEAALKYF-DRLVVEESFSPNSITFVGVLSACNHR 353
           VF  M  RD+ +WN++I GF+ HG  + AL  F D L  EE   PN +TF GVLSAC H 
Sbjct: 392 VFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEH--PNYVTFTGVLSACGHL 449

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413
           G+V EG  Y   ++ ++ + P LEHY C+V LL++ G ++EA + +   P+K D V WR+
Sbjct: 450 GLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRT 509

Query: 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473
           LL+AC   H +  L   VA+ V+E +     G Y LLS +YA  +RW+ V  VRKLM DK
Sbjct: 510 LLNAC-HVHQNYGLGRWVAEFVLEMDPNDV-GTYTLLSNIYAKEKRWDGVVKVRKLMRDK 567

Query: 474 GVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVD 533
            + KEPG S IEI  + H F + D  HP   Q Y  +  +   +K  GYTPD   A + D
Sbjct: 568 KIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIG-AVLHD 626

Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEII 593
             D+ K+  L  HSE+LAIA G+L L     I V KNLR+C DCH   +LIS++ N  I+
Sbjct: 627 VEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIV 686

Query: 594 VRDRARFHHFKDGSCSCMDYW 614
           VRD  RFHHF+DG CSC+DYW
Sbjct: 687 VRDANRFHHFRDGRCSCLDYW 707



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 186/385 (48%), Gaps = 16/385 (4%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN 95
           LL    + K++   K IH+  + T+   ++  + + S I  +A    +  A  +F ++  
Sbjct: 35  LLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPE 94

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
            N  +W+ L+     +     + I L + MI +GNV P+++    A+ +C       +G+
Sbjct: 95  RNVVSWSALMTGYLLN-GFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGR 153

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
           Q H  + K G     Y+ N+L+  Y+ C  +  A  V++ +    +V++N ++ + V+ G
Sbjct: 154 QCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENG 213

Query: 216 EFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
                L++ R M     + D  TF +  S CA L  L LG+  H  +L      +  D  
Sbjct: 214 YLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKML---TSDVECDAY 270

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           V++++I+MY KCG   +AR VF+ +  R++  W +++     +G  E AL  F ++  +E
Sbjct: 271 VSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKM-EQE 329

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY----GCLVDLLARAG 390
           +   N  T+  +L+AC        G      +++ ++     +H+      L+++ A++G
Sbjct: 330 NVKSNEFTYAVLLNACAGLSARRNGS-----LLHGHSEKSGFKHHVMVGNALINMYAKSG 384

Query: 391 NIDEALHLVSNMPMKPDAVIWRSLL 415
           +I+ A  + S+M M  D + W +++
Sbjct: 385 DIEAAKKVFSDM-MHRDIITWNAMI 408



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 9/262 (3%)

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VF  +++ N   W  ++ +C ++     +A+ LF +M EQ NV  ++ T+   L ACA L
Sbjct: 291 VFDGLQSRNVVLWTAVMASCFQN-GCFEEALNLFSKM-EQENVKSNEFTYAVLLNACAGL 348

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
            A   G   H H  K G    V + N+LI+ YA  G ++ A KVF +M+ R +++WN MI
Sbjct: 349 SARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMI 408

Query: 209 DAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267
             F   G    AL +F+ M    E P+  TF  + SAC  L  +  G +   ++++    
Sbjct: 409 CGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQ--F 466

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKY 326
            +   +     ++ +  K G L+ AR    + P K D+ +W +++    +H       ++
Sbjct: 467 GVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLG-RW 525

Query: 327 FDRLVVEESFSPNSITFVGVLS 348
               V+E    PN +    +LS
Sbjct: 526 VAEFVLE--MDPNDVGTYTLLS 545



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 101/204 (49%), Gaps = 17/204 (8%)

Query: 224 FRRMQILFEPDGYTFQS------ITSACAGLATLSLGMWAHAYIL---RHCDHSLVTDVL 274
           FR    L  P+  +  S      +    A    L +G   H++++   R  ++S++    
Sbjct: 12  FRHAPFLLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEV-- 69

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
             NSLI+ Y K   + IA  +F+ MP+R++ SW++++ G+ L+G +   ++    ++ E 
Sbjct: 70  --NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEG 127

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNID 393
           + SPN       +S+C  RG V EGR    +++   ++    + +   LV + ++   + 
Sbjct: 128 NVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRN--ALVSMYSKCSIVQ 185

Query: 394 EALHLVSNMPMKPDAVIWRSLLDA 417
           +A+ + + +P+  D V + S+L +
Sbjct: 186 DAMGVWNEVPVN-DIVAYNSILSS 208


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/453 (41%), Positives = 278/453 (61%), Gaps = 10/453 (2%)

Query: 165 GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
           G   DV    +++      G  D A  +FD M ER+LVSWN M+  +V+   F  AL++F
Sbjct: 160 GGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVF 219

Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M+    + + +   +   AC G   L+ G   H ++ +     +  D  +  +++DMY
Sbjct: 220 DEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQS---GIQMDEKLATAVVDMY 276

Query: 284 CKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           CKCG ++ A +VFE++P   + LT+WN +I GFA+HGR E ALK F R+   E  +P+ +
Sbjct: 277 CKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRME-REGVAPDDV 335

Query: 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401
           T V VL+AC H GM+SEGR YF+ +   Y I P +EHYGC+VDL  RAG ++EA  ++ +
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395

Query: 402 MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
           MPM+PD  +  +L  A  K H  V L E +  +VIE +    SG YVLL+ + A+A RW 
Sbjct: 396 MPMEPDVGVLGALFGAS-KIHGDVDLGEAIGWRVIELDPQ-NSGRYVLLANLLATAGRWE 453

Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
           DV  VR+LM ++ V+KE G S IE+ G   EF  G   HP+ +++Y     +  ++++ G
Sbjct: 454 DVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEG 513

Query: 522 YTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVT 581
           Y PD ++  +    ++ K++ L  HSE+LAIA G+L+ +PG  +R+ KNLRVC+DCHE T
Sbjct: 514 YVPD-TRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEAT 572

Query: 582 KLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           K +SR+F  +I+VRDR RFHHFKDG CSC DYW
Sbjct: 573 KFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 307/523 (58%), Gaps = 14/523 (2%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+SF + +L RA AR     P A + F R +    +      F    KACA L A   G 
Sbjct: 68  PDSFLFCSLTRATARR--GLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGM 125

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             HAH    GL S+ ++  SL+  Y+ CG LD+A K+FD + ++S+V+WN MI  + Q G
Sbjct: 126 GIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNG 185

Query: 216 EFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
               A++++R MQ+  E PD  TF +  SACA    L LG      I+      +  +V+
Sbjct: 186 LAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIV---SERMEMNVV 242

Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
           +  +L++MY +CG ++ AR+ F  + +R++ +W S+I G+ +HG    A+K F+ L+ ++
Sbjct: 243 LGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFN-LMRQQ 301

Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
              PN +TFV VLSAC H G+VSEGRD F  M + Y + P +EHY  +VD+  RAG +D+
Sbjct: 302 GPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDD 361

Query: 395 ALHLV-SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453
           A+  +  ++P +P   +W ++L A CK H    L  EVA+++I  E    S   VLLS +
Sbjct: 362 AMRFIHDSIPGEPGPEVWTAMLGA-CKMHKDFNLGVEVAERLIALEPESPSH-RVLLSNL 419

Query: 454 YASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLI 513
           YA + + N V  VR  M  + + K  G S IEI G+AH F  G+ SHP+T +IY +L+ +
Sbjct: 420 YALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKL 479

Query: 514 DEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG--MPIRVFKNL 571
            EK+   GY P  + + + +  ++ ++ +LR H E+LA+A G++ +  G   PIR+ KNL
Sbjct: 480 IEKITDVGYVPK-TDSVLHELEEEEREFALRYHGEKLAVAFGLM-MTSGCTTPIRIIKNL 537

Query: 572 RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           R+C+DCH   K +S + N EIIVRD  RFHHFK G CSC +YW
Sbjct: 538 RICEDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 327/588 (55%), Gaps = 23/588 (3%)

Query: 37   LSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
            +S L+ C S+  L   +Q+H  A++  L     T +  + +  +        ++ +F  +
Sbjct: 480  ISGLSSCASLRLLTAGQQVHCDAVKWGL--DLDTSVSNALVKMYGDCGARSESWEIFNSM 537

Query: 94   ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
               +  +WN+++     S     +++ +F  M+  G + P+K TF   L A + L     
Sbjct: 538  AEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSG-LTPNKVTFVNLLSALSPLSVLEL 596

Query: 154  GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-ERSLVSWNVMIDAFV 212
            GKQ HA + K G + D  ++N+L+  YA  G +D   ++F +M   R  VSWN MI  ++
Sbjct: 597  GKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYI 656

Query: 213  QFGEFDSALKLFRRM----QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
              G     +     M    Q+L   D  TF  + +ACA +A L  GM  HA+ +R     
Sbjct: 657  YNGHLQETMDCVWLMMHSNQML---DCCTFSIVLNACASVAALERGMEMHAFGIRS---Q 710

Query: 269  LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
            L +DV+V ++L+DMY KCG +D A +VF SM +++  SWNS+I G+A HG  E AL+ F+
Sbjct: 711  LESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFE 770

Query: 329  RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
             +       P+ +TFV VLSAC+H G+V  G DYF+ M+ ++ I P +EHY C++DLL R
Sbjct: 771  EMQ-RNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MMEDHGILPHIEHYSCVIDLLGR 828

Query: 389  AGNIDEALHLVSNMPMKPDAVIWRSLLDAC--CKKHASVVLSEEVAKQVIESEGGICSGV 446
            AG + +    ++ MPMKP+ +IWR++L AC   K    + L +E ++ ++E E       
Sbjct: 829  AGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVN- 887

Query: 447  YVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQI 506
            YVL S  YA+  RW D    R  M    + KE G S + +    H F AGD SHP TK+I
Sbjct: 888  YVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEI 947

Query: 507  YGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIR 566
            Y  L+ + +K+K+ GY P  ++ A+ D  ++ K+  L  HSE+LA+A  +      +PIR
Sbjct: 948  YEKLNFLIQKIKNAGYVP-MTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIR 1006

Query: 567  VFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            + KNLRVC DCH   + IS+I   +II+RD  RFHHF+DG CSC DYW
Sbjct: 1007 IMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 20/375 (5%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           +++H   LRT L    K  L    +  +A    +D A RVF  +   +  +WNT+I    
Sbjct: 394 REVHGHILRTGLIDL-KIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLD 452

Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
           +  +   +  ++   M+ QG + P        L +CA L   + G+Q H    K GL  D
Sbjct: 453 Q--NGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLD 510

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV-QFGEFDSALKLFRR-M 227
             ++N+L+  Y  CG    + ++F++M E  +VSWN ++   V        ++++F   M
Sbjct: 511 TSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMM 570

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           +    P+  TF ++ SA + L+ L LG   HA +L+   H  + D  V+N+L+  Y K G
Sbjct: 571 RSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLK---HGAIEDNAVDNALMSCYAKSG 627

Query: 288 SLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
            +D   Q+F SM  +RD  SWNS+I G+  +G  +  +     L++  +   +  TF  V
Sbjct: 628 DMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCV-WLMMHSNQMLDCCTFSIV 686

Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEH----YGCLVDLLARAGNIDEALHLVSNM 402
           L+AC     +  G +     ++ + I   LE        L+D+ ++ G ID A  + ++M
Sbjct: 687 LNACASVAALERGME-----MHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSM 741

Query: 403 PMKPDAVIWRSLLDA 417
             K +   W S++  
Sbjct: 742 SQK-NEFSWNSMISG 755



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 19/283 (6%)

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           ++ H  + KRGL  D++++N L++ YA    L  A +VFD MLER+ VSW  ++  +V  
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 215 GEFDSALKLFRRMQILFE------PDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCD 266
           G  D A ++F+ M  L+E      P  +TF S+  AC  AG   L+  +  H  + +   
Sbjct: 136 GITDEAFRVFKAM--LWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTI- 192

Query: 267 HSLVTDVLVNNSLIDMY--CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
               ++  V N+LI MY  C  G    A+QVF++ P RDL +WN+++  +A  G   +  
Sbjct: 193 --YASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTF 250

Query: 325 KYFDRLVVEES---FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
             F  ++ ++S     PN  TF  +++A +     S   D     + +   +  L     
Sbjct: 251 TLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSA 310

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
           LV   AR G +DEA  +  N+  + +AV    L+    K+H S
Sbjct: 311 LVSAFARHGMLDEAKDIFINLKER-NAVTLNGLIVGLVKQHCS 352



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 175/367 (47%), Gaps = 26/367 (7%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIV----LFQRMIEQGNVL---PDKHTF 138
           A +VF      +  TWN L+     SV AK   +V    LF  M+   + +   P++HTF
Sbjct: 218 AQQVFDTTPVRDLITWNALM-----SVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTF 272

Query: 139 PFALKACAYLFAFSQG--KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
              + A + L + S G   Q  A + K G  SD+Y+ ++L+  +A  G LD A  +F N+
Sbjct: 273 GSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINL 331

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT----LS 252
            ER+ V+ N +I   V+    + A+ +F   +  F  +  TF  + SA A  +     L 
Sbjct: 332 KERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLM 391

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
            G   H +ILR     L   + ++N L++MY KCG++D A +VF  +  RD  SWN+II 
Sbjct: 392 RGREVHGHILRTGLIDL--KIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYN 371
               +G  E A+  +  ++ +   SP++   +  LS+C    +++ G+  + D +    +
Sbjct: 450 VLDQNGFCEGAMMNY-CMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLD 508

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
           +   + +   LV +    G   E+  + ++M  + D V W S++      HA    S EV
Sbjct: 509 LDTSVSN--ALVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIMGVMVSSHAPTAESVEV 565

Query: 432 AKQVIES 438
              ++ S
Sbjct: 566 FSNMMRS 572



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 13/307 (4%)

Query: 13  PQTHSHSIFNNNRNEGSFNNHSS---LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLL 69
           P   S  +F+N    G   N  +   LLS+L+    +   KQ+HA  L+    + +   +
Sbjct: 558 PTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNA--V 615

Query: 70  IYSRIIHFASFADLDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
             + +  +A   D+D   ++F  +    ++ +WN++I       +   Q  +    ++  
Sbjct: 616 DNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYI--YNGHLQETMDCVWLMMH 673

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
            N + D  TF   L ACA + A  +G + HA   +  L SDV + ++L+  Y+ CG +D 
Sbjct: 674 SNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDY 733

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACAG 247
           A+KVF++M +++  SWN MI  + + G  + AL++F  MQ     PD  TF S+ SAC+ 
Sbjct: 734 ASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSH 793

Query: 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTS 306
              +  G+    Y     DH ++  +   + +ID+  + G L   ++    MP K +   
Sbjct: 794 AGLVDRGL---DYFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLI 850

Query: 307 WNSIILG 313
           W ++++ 
Sbjct: 851 WRTVLVA 857



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 58/350 (16%)

Query: 84  DYAFRVFY-------QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           D AFRVF        +   P  FT+ +++RAC    DA P                    
Sbjct: 139 DEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQ---DAGPD------------------- 176

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC--GHLDLANKVFD 194
                      L AF+   Q H  + K    S+  + N+LI  Y +C  G    A +VFD
Sbjct: 177 -----------LLAFA--VQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFD 223

Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-----QILFEPDGYTFQSITSACAGLA 249
               R L++WN ++  + + G   S   LF  M      I   P+ +TF S+ +A + L+
Sbjct: 224 TTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATS-LS 282

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           + S G+    +  R       +D+ V ++L+  + + G LD A+ +F ++ +R+  + N 
Sbjct: 283 SCSSGVLDQVFA-RVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNG 341

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE----GRDYFDV 365
           +I+G      +E A+  F  +   +SF  N+ TFV +LSA     +  +    GR+    
Sbjct: 342 LIVGLVKQHCSEEAVGIF--MGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGH 399

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++    I   +     LV++ A+ G ID+A  +   +  + D V W +++
Sbjct: 400 ILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCAR-DRVSWNTII 448


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/456 (39%), Positives = 274/456 (60%), Gaps = 17/456 (3%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA-------- 220
           D  +  +L+  +A CG +    KVFD +    L +WN ++ A+ +    D A        
Sbjct: 390 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADA 449

Query: 221 -LKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
            L++F RM  +  +P+  T  ++  AC  L  +S G+WAH Y ++     L  + +V  +
Sbjct: 450 ILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKR---RLAVNCIVATA 506

Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
           L++MY  CG LD+A QVF +   RD   +N+++ G A+HG   AAL  FDR+   E    
Sbjct: 507 LVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMH-GEGVPV 565

Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
           + +T + V+ AC H G+V EG DYFD M  E+ I P +EHYGC+VD+L+RAG +++A  L
Sbjct: 566 DGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKL 625

Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
           +  MP+ P+A I+RSL+ AC   H  + L +++  +++  E    SG +VL+S  YA+  
Sbjct: 626 IHGMPIVPNAAIYRSLIRAC-GIHGKLELGKKMIAELMRLEPDD-SGNHVLISNFYATTN 683

Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
           RW+D    RK M   G+ K PG S ++I+G+ HEF  GD +HP +K+IY  ++ I+ +L 
Sbjct: 684 RWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLS 743

Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
             G+    S +A+ D  ++ K  +L  HSERLAIA  ++   PG PIR+ KNLRVC DCH
Sbjct: 744 ECGHRSSTS-SALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCH 802

Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           E  KL+SR++  EI++RDR RFHHF+DG CSC D+W
Sbjct: 803 ESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 124/287 (43%), Gaps = 16/287 (5%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR--------SVDAKPQAIVLFQRMIEQ 128
           FA    +    +VF +I NP+   WN L+ A AR        +  A    + +F RM+  
Sbjct: 401 FARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSL 460

Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
             + P++ T    + AC  L A S G  AH +  KR L  +  +  +L+  YA CG LDL
Sbjct: 461 A-IKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDL 519

Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAG 247
           A +VF    +R    +N M+      G   +AL LF RM     P DG T  S+  ACA 
Sbjct: 520 AEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAH 579

Query: 248 LATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLT 305
              +  G+    Y  R   +  +   +     ++DM  + G L+ A ++   MP   +  
Sbjct: 580 AGLVDEGL---DYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAA 636

Query: 306 SWNSIILGFALHGRAEAALKYFDRLV-VEESFSPNSITFVGVLSACN 351
            + S+I    +HG+ E   K    L+ +E   S N +      +  N
Sbjct: 637 IYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTN 683


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/484 (38%), Positives = 292/484 (60%), Gaps = 12/484 (2%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLANK 191
           P +  F   +   AY+   ++G+ A A     G+   D+   N++IH YA  G + +A +
Sbjct: 112 PRRDVFLCNVMLAAYV---ARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMARE 168

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLAT 250
           +FD   +R   SW+ MI A+ +      AL+L+R M++    PD  +  S+ SAC+ +  
Sbjct: 169 IFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGA 228

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L++G   H ++     + +  D+ +  +L+DMY KCG ++ + +VF +MP +D+ +W+S+
Sbjct: 229 LAIGAEVHRFVE---SNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSM 285

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I+G A HG    AL  F  ++  +   PN ITF+GVL AC H G+V++G+ YF  M + +
Sbjct: 286 IIGLANHGLGHDALSLFSEMI-SQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVH 344

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
            + P +EHYGC+VDLL RAG+++EA+ L+ +M  KPD +IWR+LL A C+ H +V ++EE
Sbjct: 345 GVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGA-CRIHKNVEIAEE 403

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            A   ++    +  G YVLLS +YA A  W  V  +RK +  + + + PG SSIE +   
Sbjct: 404 -AMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTV 462

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           HEF +GD SHP+ ++IY  L+ + ++L+  GY P  +   + D  +  K+ +L  HSE+L
Sbjct: 463 HEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRP-MTSLVLQDIDEQSKKRALAEHSEKL 521

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           AIA G+L       +R+ KNLR C+DCH   KLIS  ++ ++IVRDR RFHHF +G CSC
Sbjct: 522 AIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSC 581

Query: 611 MDYW 614
            DYW
Sbjct: 582 KDYW 585



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 130/271 (47%), Gaps = 9/271 (3%)

Query: 66  KTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQR 124
           + L+ ++ +IH +A   D+  A  +F    + ++F+W+++I A A+   +K +A+ L++ 
Sbjct: 145 RDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSK-EALELWRE 203

Query: 125 MIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           M   G V PD  +    L AC+ + A + G + H  +    +  D+ +  +L+  YA CG
Sbjct: 204 MRVAG-VAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCG 262

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITS 243
            ++ + KVF  M  + +++W+ MI      G    AL LF  M     +P+  TF  +  
Sbjct: 263 DIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLI 322

Query: 244 ACAGLATLSLGMWAHAYILRHCD-HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-K 301
           AC  +  ++ G     Y     D H +V  +     ++D+  + G ++ A ++  SM  K
Sbjct: 323 ACTHVGLVNDG---KKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFK 379

Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
            D   W +++    +H   E A +   +L V
Sbjct: 380 PDPIIWRTLLGACRIHKNVEIAEEAMAKLKV 410



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 69/227 (30%)

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK--CGSLDIARQVFESMPK--------- 301
           LG   HA  LR        D+ V  +L++MY K   G + +AR  F+  P+         
Sbjct: 65  LGASLHARALR--SGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVM 122

Query: 302 ----------------------RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS-- 337
                                 RDL SWN++I G+A+ G    A + FD     ++FS  
Sbjct: 123 LAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWS 182

Query: 338 ----------------------------PNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
                                       P+ I+ V VLSAC+  G ++ G +    +  E
Sbjct: 183 SMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFV--E 240

Query: 370 YNITPVLEHYG-CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            N   V    G  LVD+ A+ G+I+ +L +   MP+K D + W S++
Sbjct: 241 SNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK-DVLTWSSMI 286


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 297/544 (54%), Gaps = 22/544 (4%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A   DL  A R+F +    + FTW  ++    ++             M+++     
Sbjct: 239 ISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQN------------GMVDEARKYF 286

Query: 134 DKHTFPFALKACAYLFAFSQGKQA--HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
           D+      +   A L  + Q K+      +F+     ++   N++I  Y   G +  A K
Sbjct: 287 DEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARK 346

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY-TFQSITSACAGLAT 250
           +FD M +R  VSW  +I  + Q G ++ AL +F  M+   E     TF    S CA +A 
Sbjct: 347 LFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAA 406

Query: 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSI 310
           L LG   H  +++       T   V N+L+ MY KCGS D A  VFE + ++D+ SWN++
Sbjct: 407 LELGKQVHGQVVKA---GFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTM 463

Query: 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370
           I G+A HG    AL  F+ +  +    P+ IT VGVLSAC+H G++  G +YF  M  +Y
Sbjct: 464 IAGYARHGFGRQALVLFESMK-KAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDY 522

Query: 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEE 430
           N+ P  +HY C++DLL RAG ++EA +L+ NMP  P A  W +LL A  + H +  L E+
Sbjct: 523 NVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGAS-RIHGNTELGEK 581

Query: 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIA 490
            A+ V + E    SG+YVLLS +YA++ RW DVG +R  M + GV K  G S +E+    
Sbjct: 582 AAEMVFKMEPQ-NSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKI 640

Query: 491 HEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERL 550
           H F  GD  HP+  +IY FL+ +D K++  GY    ++  + D  ++ K+  L+ HSE+L
Sbjct: 641 HTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSS-TKLVLHDVEEEEKEHMLKYHSEKL 699

Query: 551 AIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSC 610
           A+A GIL +  G PIRV KNLRVC+DCH   K IS+I    II+RD  RFHHF +G CSC
Sbjct: 700 AVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSC 759

Query: 611 MDYW 614
            DYW
Sbjct: 760 GDYW 763



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 173/394 (43%), Gaps = 57/394 (14%)

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           D A RVF  +   +S ++N +I    R+      A  LF +M       P++  F + + 
Sbjct: 63  DSALRVFNSMPRRSSVSYNAMISGYLRNAKF-SLARDLFDKM-------PERDLFSWNVM 114

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
              Y+     G +AH  +F      DV   N+++  YA  G +D A +VF+ M  R+ +S
Sbjct: 115 LTGYVRNRRLG-EAHK-LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSIS 172

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           WN ++ A+V  G    A +LF             ++ I+  C     +   M   A  L 
Sbjct: 173 WNGLLAAYVHNGRLKEARRLFESQS--------NWELISWNCLMGGYVKRNMLGDARQL- 223

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
             D   V DV+  N++I  Y + G L  A+++F   P RD+ +W +++ G+  +G  + A
Sbjct: 224 -FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEA 282

Query: 324 LKYFDRLVVEESFSPNSI--------------------------TFVGVLSACNHRGMVS 357
            KYFD + V+   S N++                          ++  +++     G ++
Sbjct: 283 RKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIA 342

Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD- 416
           + R  FD+M     ++     +  ++   A+ G+ +EAL++   M    ++   RS    
Sbjct: 343 QARKLFDMMPQRDCVS-----WAAIISGYAQNGHYEEALNMFVEMKRDGESSN-RSTFSC 396

Query: 417 --ACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
             + C   A++ L ++V  QV+++  G  +G +V
Sbjct: 397 ALSTCADIAALELGKQVHGQVVKA--GFETGCFV 428



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 25/251 (9%)

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
           D+   N  I  +   GH D A +VF++M  RS VS+N MI  +++  +F  A  LF +M 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
              E D +++  + +    +    LG  AH       D     DV+  N+++  Y + G 
Sbjct: 105 ---ERDLFSWNVMLTGY--VRNRRLGE-AHKLF----DLMPKKDVVSWNAMLSGYAQNGF 154

Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
           +D AR+VF  MP R+  SWN ++  +  +GR + A + F+     E  S N +     + 
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCL-----MG 209

Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLE--HYGCLVDLLARAGNIDEALHLVSNMPMKP 406
               R M+ + R  FD M       PV +   +  ++   A+ G++ +A  L +  P++ 
Sbjct: 210 GYVKRNMLGDARQLFDRM-------PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIR- 261

Query: 407 DAVIWRSLLDA 417
           D   W +++  
Sbjct: 262 DVFTWTAMVSG 272


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 310/539 (57%), Gaps = 10/539 (1%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A   D++ A  +F  I + +   W+ LI   A+S     QA  +F RM+ +  V+P++ 
Sbjct: 294 YAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQ-NEQAFEMFLRMM-RSFVVPNEF 351

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
           +    L+ACA +     G+Q H    K G  S++++ N+L+  YA C +++ + ++F ++
Sbjct: 352 SLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSL 411

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255
            + + VSWN +I  + Q G  + AL +F  M+         TF S+  ACA  +++   +
Sbjct: 412 QDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAV 471

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H+ I +    +   D +V NSLID Y KCG +  A +VFES+ + D+ SWNSII  +A
Sbjct: 472 QIHSLIEKS---TFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYA 528

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
           LHGRA  AL+ FDR+  +     N +TFV +LS C   G+V++G   F+ M+ ++ I P 
Sbjct: 529 LHGRATNALELFDRMN-KSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPS 587

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
           +EHY C+V LL RAG + +AL  + ++P  P  ++WR+LL +C   H +V L    A++V
Sbjct: 588 MEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVV-HKNVALGRYAAEKV 646

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           ++ E       YVLLS +YA+A   ++V L RK M + GV KE G S +EI G  H F  
Sbjct: 647 LDIEPHD-ETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSV 705

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
           G   HP  + I   L+ ++ K    GY PD +   + D  ++ K   L +HSERLA+A G
Sbjct: 706 GSADHPDMRIINAMLEWLNLKASREGYVPDIN-VVLHDVDEEEKARMLWVHSERLALAYG 764

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           +    PG PIR+ KNLR C DCH + K+IS+I   EIIVRD  RFHHF++G CSC DYW
Sbjct: 765 LSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 187/403 (46%), Gaps = 16/403 (3%)

Query: 20  IFNNNRNEGSFNNH---SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   + EG   NH   +++L  L    +      IHA A +  L       +  + I  
Sbjct: 135 LFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACK--LGHDRNAFVGTALIDA 192

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           ++    + +A  VF  I   ++ TW  ++ +C    D    A+  F +M   G   P+  
Sbjct: 193 YSLCGAVCHARCVFDGIVGKDAVTWTAMV-SCYSENDIPEYALNTFSKMRMTG-FKPNPF 250

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
               ALKA   L +   GK  H    K    ++ ++  +L+  YA CG ++ A+ +F+ +
Sbjct: 251 VLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMI 310

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGM 255
               ++ W+ +I  + Q  + + A ++F RM   F  P+ ++   +  ACA +A L LG 
Sbjct: 311 PHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGE 370

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H   ++    S   ++ V N+L+DMY KC +++ + ++F S+   +  SWN+II+G+ 
Sbjct: 371 QIHNLAIKLGYES---ELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYC 427

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM-INEYNITP 374
             G AE AL  F  +      S   +TF  VL AC +   +        ++  + +N   
Sbjct: 428 QSGFAEDALSVFHEMRAAHMLS-TQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDT 486

Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           ++     L+D  A+ G I +AL +  ++ ++ D V W S++ A
Sbjct: 487 IV--CNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISA 526



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 154 GKQAHAHIFKRGLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
           G+  HA + +RG V+  D +  N L++FYA  G L  A ++FD M ER+ VS+  ++  +
Sbjct: 64  GRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGY 123

Query: 212 VQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV 270
              GEF+ AL+LFRR+Q    E + +   +I      +    L    HA     C     
Sbjct: 124 ALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACA---CKLGHD 180

Query: 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330
            +  V  +LID Y  CG++  AR VF+ +  +D  +W +++  ++ +   E AL  F ++
Sbjct: 181 RNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKM 240

Query: 331 VVEESFSPNSITFVGVLSA--CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
            +   F PN       L A  C    ++ +G     V    Y+  P +   G L+D+ A+
Sbjct: 241 RM-TGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVK-TLYDTEPHVG--GALLDMYAK 296

Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLL 415
            G+I++A H +  M    D ++W  L+
Sbjct: 297 CGDIEDA-HAIFEMIPHDDVILWSFLI 322



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 43/275 (15%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQLK---QIHAQALRTALPQQHKTLLIYSRII 75
           S+F+  R     +   +  S L  C + S +K   QIH+   ++     + T++  S I 
Sbjct: 437 SVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTF--NNDTIVCNSLID 494

Query: 76  HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135
            +A    +  A +VF  I   +  +WN++I A A    A   A+ LF RM  + ++  + 
Sbjct: 495 TYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRAT-NALELFDRM-NKSDIKAND 552

Query: 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195
            TF   L  C      +QG               +++ NS++                D+
Sbjct: 553 VTFVSLLSVCGSTGLVNQG---------------LWLFNSMM---------------MDH 582

Query: 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGM 255
            ++ S+  +  ++    + G    ALK      I   P    ++++ S+C     ++LG 
Sbjct: 583 RIKPSMEHYTCIVRLLGRAGRLTDALKFIG--DIPSTPSPMVWRALLSSCVVHKNVALGR 640

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
           +A   +L    H   T VL++N    MY   G LD
Sbjct: 641 YAAEKVLDIEPHDETTYVLLSN----MYAAAGILD 671


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 303/568 (53%), Gaps = 45/568 (7%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           ++ A  +F  +   +  +WNT+I A          A+  F RM+   ++ PD  T    L
Sbjct: 429 MELAVSMFENMVERSIVSWNTII-AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVL 487

Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV---------- 192
            ACA L     GKQ H++I + G+     I N+LI  YA  G ++ A ++          
Sbjct: 488 SACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLN 547

Query: 193 -----------------------FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
                                  FD M  R +++W  MI  + Q G+ D A++LFR M +
Sbjct: 548 VISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMIL 607

Query: 230 LF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
           +  EP+ +T  ++ SACA LA L  G   H   +R      V+   V+N++I +Y + GS
Sbjct: 608 IGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVS---VSNAIITVYARSGS 664

Query: 289 LDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           + +AR+VF+ +  R  T +W S+I+  A HG  E A+  F+ +V      P+ IT+VGVL
Sbjct: 665 VPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV-RVGVKPDHITYVGVL 723

Query: 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
           SAC H G V +G+ Y++ M NE+ I P + HY C+VDL ARAG + EA   +  MP+ PD
Sbjct: 724 SACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPD 783

Query: 408 AVIWRSLLDAC-CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466
            V+W SLL AC  +K+A +    E+A   + S     SG Y  L+ VY++  RWND   +
Sbjct: 784 TVVWGSLLAACRVRKNADLA---ELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARI 840

Query: 467 RKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDY 526
            KL  DKGV KE G S   + G  H F A D  HPQ   IY     + E++K  G+ PD 
Sbjct: 841 WKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDL 900

Query: 527 SQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISR 586
           + + + D  D+ K+  L  HSE+LAIA G+++      +R+ KNLRVC DCH   K IS+
Sbjct: 901 N-SVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISK 959

Query: 587 IFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             + EIIVRD  RFHHF+DG CSC DYW
Sbjct: 960 FVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 193/447 (43%), Gaps = 71/447 (15%)

Query: 54  AQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112
           A+ L   +P   +    ++ ++  +A    L  A  VF ++ + ++ +W  +I    RS 
Sbjct: 267 ARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRS- 325

Query: 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172
                A+  F  M+ +G   P + T    L +CA + A   G++ H  + K GL S V +
Sbjct: 326 GRFWDAVKTFLDMVSEG-FAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPV 384

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD-------------- 218
            NS+++ Y  CG  + A  VF+ M  RS+ SWNVM+  +   G  +              
Sbjct: 385 ANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI 444

Query: 219 -----------------SALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHA 259
                             ALK F RM      EPD +T  S+ SACA L  L +G   H+
Sbjct: 445 VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHS 504

Query: 260 YILRH----------------------------CDHSLVTD--VLVNNSLIDMYCKCGSL 289
           YILR                              D ++V D  V+   +L++ Y K G  
Sbjct: 505 YILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDT 564

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
             AR++F+ M  RD+ +W ++I+G+  +G+ + A++ F  +++     PNS T   VLSA
Sbjct: 565 KQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGP-EPNSHTLAAVLSA 623

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C     +  G+      I       V      ++ + AR+G++  A  +   +  + + +
Sbjct: 624 CASLAYLDYGKQIHCKAIRSLQEQSV-SVSNAIITVYARSGSVPLARRVFDQICWRKETI 682

Query: 410 IWRSLLDACCK---KHASVVLSEEVAK 433
            W S++ A  +      +VVL EE+ +
Sbjct: 683 TWTSMIVAMAQHGLGEQAVVLFEEMVR 709



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 137/327 (41%), Gaps = 73/327 (22%)

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC------------------ 183
           L+ C      S G+  HAH  K GL+   Y+ N+L+ +YAS                   
Sbjct: 216 LQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIP 275

Query: 184 -------------------GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
                              G L  A+ VF  M +R  VSW +MI    + G F  A+K F
Sbjct: 276 YARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTF 335

Query: 225 RRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
             M    F P  +T  ++ S+CA +    +G   H ++++     L + V V NS++ MY
Sbjct: 336 LDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVK---LGLSSCVPVANSVLYMY 392

Query: 284 CKCGSLDIARQV-------------------------------FESMPKRDLTSWNSIIL 312
            KCG  + AR V                               FE+M +R + SWN+II 
Sbjct: 393 GKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIA 452

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+  +G    ALK+F R++   S  P++ T   VLSAC +  M+  G+     ++    +
Sbjct: 453 GYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT-GM 511

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLV 399
               +    L+   A++G+++ A  ++
Sbjct: 512 PCSSQIMNALISTYAKSGSVETARRIM 538



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 148/353 (41%), Gaps = 39/353 (11%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALP--QQHKTLLIYS-----------RIIHFASF 80
           +S+LS+    + +   KQ+H+  LRT +P   Q    LI +           RI+  A  
Sbjct: 484 TSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVV 543

Query: 81  ADLDY------------------AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
           ADL+                   A  +F  + N +   W  +I    ++     +A+ LF
Sbjct: 544 ADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQN-GQNDEAMELF 602

Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
           + MI  G   P+ HT    L ACA L     GKQ H    +      V ++N++I  YA 
Sbjct: 603 RSMILIGPE-PNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYAR 661

Query: 183 CGHLDLANKVFDNMLER-SLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQS 240
            G + LA +VFD +  R   ++W  MI A  Q G  + A+ LF  M ++  +PD  T+  
Sbjct: 662 SGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVG 721

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           + SACA    +  G     Y     +H +V  +     ++D++ + G L  A +  + MP
Sbjct: 722 VLSACAHAGFVDKG--KRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMP 779

Query: 301 -KRDLTSWNSIILGFALHGRAE-AALKYFDRLVVEESFSPNSITFVGVLSACN 351
              D   W S++    +   A+ A L     L ++   S        V SAC 
Sbjct: 780 VAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACG 832


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 294/494 (59%), Gaps = 45/494 (9%)

Query: 156 QAHAHIFKRG-------LVSDV---------YINNSLIHFYAS----------------- 182
           QAHA IFK G       LVS V         Y+   L+ ++ S                 
Sbjct: 51  QAHAQIFKLGYGTYPSLLVSTVAAYRRCNRSYLARRLLLWFLSLSPGVCNINLIIESLMK 110

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQS 240
            G   LA KV  N  ++++++WN+MI  +V+  +++ ALK  + M      +P+ ++F S
Sbjct: 111 IGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFAS 170

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             +ACA L  L    W H+ ++   D  +  + +++++L+D+Y KCG +  +R+VF S+ 
Sbjct: 171 SLAACARLGDLHHAKWVHSLMI---DSGIELNAILSSALVDVYAKCGDIGTSREVFYSVK 227

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + D++ WN++I GFA HG A  A++ F  +  E   SP+SITF+G+L+ C+H G++ EG+
Sbjct: 228 RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEH-VSPDSITFLGLLTTCSHCGLLEEGK 286

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           +YF +M   ++I P LEHYG +VDLL RAG + EA  L+ +MP++PD VIWRSLL +   
Sbjct: 287 EYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSS--- 343

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
             +    + E+ +  I++     SG YVLLS +Y+S ++W     VR+LM+ +G+ K  G
Sbjct: 344 --SRTYKNPELGEIAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKG 401

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S +E  G+ H F AGDTSH +TK IY  L+ + +K KS+G+  D +   ++D  ++ K+
Sbjct: 402 KSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSD-TDLVLMDVSEEEKE 460

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +L  HSE+LA+A  IL   PG  IR+ KN+R+C DCH   K +S++ N  II+RDR RF
Sbjct: 461 ENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRF 520

Query: 601 HHFKDGSCSCMDYW 614
           H F+DG CSC DYW
Sbjct: 521 HRFEDGLCSCRDYW 534



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 5/228 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +V     + N  TWN +I    R+V  + +A+   + M+   ++ P+K +F  +L AC
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYE-EALKALKNMLSFTDIKPNKFSFASSLAAC 175

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L      K  H+ +   G+  +  ++++L+  YA CG +  + +VF ++    +  WN
Sbjct: 176 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 235

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  F   G    A+++F  M+     PD  TF  + + C+    L  G      + R 
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 295

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
              S+   +    +++D+  + G +  A ++ ESMP + D+  W S++
Sbjct: 296 --FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 39/226 (17%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  S  SSL  C  +  L   K +H+  + + +  +   +L  + +  +A   D+  +  
Sbjct: 164 NKFSFASSLAACARLGDLHHAKWVHSLMIDSGI--ELNAILSSALVDVYAKCGDIGTSRE 221

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VFY ++  +   WN +I   A    A  +AI +F  M E  +V PD  TF   L  C++ 
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLA-TEAIRVFSEM-EAEHVSPDSITFLGLLTTCSHC 279

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +GK+    + +R       I   L H+ A                         M+
Sbjct: 280 GLLEEGKEYFGLMSRR-----FSIQPKLEHYGA-------------------------MV 309

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
           D   + G    A +L   M I  EPD   ++S+ S+        LG
Sbjct: 310 DLLGRAGRVKEAYELIESMPI--EPDVVIWRSLLSSSRTYKNPELG 353


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 310/527 (58%), Gaps = 22/527 (4%)

Query: 96  PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
           P+SF +++L R  A      P A + F R +    +     TF    KACA L A   G 
Sbjct: 68  PDSFLFSSLTRTAAH--HGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGA 125

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
             HAH    G  SD ++  +L+  Y+ CG L +A K+FD + +RS+V+WN MI  + Q G
Sbjct: 126 AIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNG 185

Query: 216 EFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-- 272
             +  + +++ MQ     PD  TF +  SACA    L LG        R  +  +V++  
Sbjct: 186 LAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLG--------REVERRVVSERM 237

Query: 273 ---VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
              V + ++L++MY +CG +D AR+ F+++ +R++ +W S+I G+ +HG    A+K F  
Sbjct: 238 DISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLF-H 296

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           L+  E   PN +TFV VLSAC H G+V EGRD F  M   Y + P +EHY  +VD+  RA
Sbjct: 297 LMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRA 356

Query: 390 GNIDEALHLVSN-MPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448
           G +DEA+  +S+ MP +P   +W ++L AC K H +  L  EVA+++I  E    S  +V
Sbjct: 357 GLLDEAMQFISDYMPGEPGPEVWTAVLGAC-KMHKNFNLGVEVAERLIALEPENPS-YHV 414

Query: 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYG 508
           LLS +YA + + + V  VR  M  + + K+ G S IE+ G +H F  G+ SHPQT +IY 
Sbjct: 415 LLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYH 474

Query: 509 FLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL-NLKPGMPIRV 567
           +L+ +  ++ + GY P+ +++ + +  ++ ++ +LR HSE+LA+A G++ ++    PIRV
Sbjct: 475 YLEELIHRITAAGYMPE-TESVLHELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRV 533

Query: 568 FKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            KNLR+C DCH   K +S + N EI+VRD+ RFHHFKDG CSC++YW
Sbjct: 534 IKNLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580


>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
          Length = 598

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/444 (40%), Positives = 277/444 (62%), Gaps = 12/444 (2%)

Query: 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-- 230
            N +I      G   LA KV     ++++++WN+MI  +V+  +++ ALK  + M     
Sbjct: 165 TNIIIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSD 224

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            +P+ ++F S  +ACA L  L    W H+ ++   D  +  + +++++L+D+Y KCG ++
Sbjct: 225 IKPNKFSFASALAACARLGDLHHAKWVHSLMI---DAGIELNTILSSALVDVYAKCGDIE 281

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
            +R+VF S+   D++ WN++I GFA HG A  A++ F  +  E   SP+SITF+G+L+AC
Sbjct: 282 TSREVFYSVKWNDVSIWNAMITGFATHGLATEAIRVFSEMEAEH-VSPDSITFLGILTAC 340

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
           +H G++ EG+++F +M   ++I P LEHYG +VDLL RAG + EA  L+ +MP++PD VI
Sbjct: 341 SHCGLLEEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVI 400

Query: 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470
           WRSLL +     A    + E+ +  I++     SG YVLLS +Y+S ++W +   VR+LM
Sbjct: 401 WRSLLSS-----ARTYKNPELGEIAIQNLSKAKSGDYVLLSNIYSSTKKWENAQKVRELM 455

Query: 471 TDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530
           T +G+ K  G S +E  G+ H F AGDTSH  TK IY  L+ + +K KS G+  D +   
Sbjct: 456 TKEGIRKAKGKSWVEFGGVIHRFKAGDTSHIDTKAIYKVLEGLIQKAKSEGFVSD-TDLV 514

Query: 531 MVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNV 590
           ++D  ++ K+ +L  HSE+LA+A  IL   PG  IR+ KN+R+C DCH   K +S++ N 
Sbjct: 515 LMDVSEEEKEENLNYHSEKLALAYVILKSSPGSEIRIQKNIRMCSDCHNWIKAVSKLLNR 574

Query: 591 EIIVRDRARFHHFKDGSCSCMDYW 614
            II+RDR RFH F+DG CSC DYW
Sbjct: 575 VIIMRDRIRFHRFEDGLCSCKDYW 598



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +V  +  + N  TWN +I    R+V  + +A+   + M+   ++ P+K +F  AL AC
Sbjct: 181 AKKVLRRASDQNVITWNLMIGGYVRNVQYE-EALKTLKNMLSFSDIKPNKFSFASALAAC 239

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L      K  H+ +   G+  +  ++++L+  YA CG ++ + +VF ++    +  WN
Sbjct: 240 ARLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAKCGDIETSREVFYSVKWNDVSIWN 299

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  F   G    A+++F  M+     PD  TF  I +AC+    L  G     + L  
Sbjct: 300 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGLLEEG--KEFFGLMS 357

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
              S+   +    +++D+  + G +  A  + ESMP + D+  W S++
Sbjct: 358 QRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLL 405



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327
           SL   V   N +I+   K G   +A++V      +++ +WN +I G+  + + E ALK  
Sbjct: 157 SLSPGVSNTNIIIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTL 216

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLL 386
             ++      PN  +F   L+AC   G +   +    +MI+    +  +L     LVD+ 
Sbjct: 217 KNMLSFSDIKPNKFSFASALAACARLGDLHHAKWVHSLMIDAGIELNTILS--SALVDVY 274

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           A+ G+I+ +  +  ++    D  IW +++
Sbjct: 275 AKCGDIETSREVFYSVKWN-DVSIWNAMI 302



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 41/227 (18%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  S  S+L  C  +  L   K +H+  +   +  +  T+L  + +  +A   D++ +  
Sbjct: 228 NKFSFASALAACARLGDLHHAKWVHSLMIDAGI--ELNTILSSALVDVYAKCGDIETSRE 285

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VFY ++  +   WN +I   A    A  +AI +F  M E  +V PD  TF   L AC++ 
Sbjct: 286 VFYSVKWNDVSIWNAMITGFATHGLA-TEAIRVFSEM-EAEHVSPDSITFLGILTACSHC 343

Query: 149 FAFSQGKQAHAHIFKRGLVSDVY-INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
               +GK+        GL+S  + I   L H+ A                         M
Sbjct: 344 GLLEEGKEFF------GLMSQRFSIQPKLEHYGA-------------------------M 372

Query: 208 IDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
           +D   + G+   A  L   M I  EPD   ++S+ S+        LG
Sbjct: 373 VDLLGRAGQVKEAYDLIESMPI--EPDVVIWRSLLSSARTYKNPELG 417


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 294/494 (59%), Gaps = 45/494 (9%)

Query: 156 QAHAHIFKRG-------LVSDV---------YINNSLIHFYAS----------------- 182
           QAHA IFK G       LVS V         Y+   L+ ++ S                 
Sbjct: 28  QAHAQIFKLGYGTYPSLLVSTVAAYRRCNRSYLARRLLLWFLSLSPGVCNINLIIESLMK 87

Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQS 240
            G   LA KV  N  ++++++WN+MI  +V+  +++ ALK  + M      +P+ ++F S
Sbjct: 88  IGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFAS 147

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
             +ACA L  L    W H+ ++   D  +  + +++++L+D+Y KCG +  +R+VF S+ 
Sbjct: 148 SLAACARLGDLHHAKWVHSLMI---DSGIELNAILSSALVDVYAKCGDIGTSREVFYSVK 204

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           + D++ WN++I GFA HG A  A++ F  +  E   SP+SITF+G+L+ C+H G++ EG+
Sbjct: 205 RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEH-VSPDSITFLGLLTTCSHCGLLEEGK 263

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           +YF +M   ++I P LEHYG +VDLL RAG + EA  L+ +MP++PD VIWRSLL +   
Sbjct: 264 EYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSS--- 320

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
             +    + E+ +  I++     SG YVLLS +Y+S ++W     VR+LM+ +G+ K  G
Sbjct: 321 --SRTYKNPELGEIAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKG 378

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            S +E  G+ H F AGDTSH +TK IY  L+ + +K KS+G+  D +   ++D  ++ K+
Sbjct: 379 KSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSD-TDLVLMDVSEEEKE 437

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
            +L  HSE+LA+A  IL   PG  IR+ KN+R+C DCH   K +S++ N  II+RDR RF
Sbjct: 438 ENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRF 497

Query: 601 HHFKDGSCSCMDYW 614
           H F+DG CSC DYW
Sbjct: 498 HRFEDGLCSCRDYW 511



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 5/228 (2%)

Query: 86  AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
           A +V     + N  TWN +I    R+V  + +A+   + M+   ++ P+K +F  +L AC
Sbjct: 94  AKKVLRNASDQNVITWNLMIGGYVRNVQYE-EALKALKNMLSFTDIKPNKFSFASSLAAC 152

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
           A L      K  H+ +   G+  +  ++++L+  YA CG +  + +VF ++    +  WN
Sbjct: 153 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 212

Query: 206 VMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            MI  F   G    A+++F  M+     PD  TF  + + C+    L  G      + R 
Sbjct: 213 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 272

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSII 311
              S+   +    +++D+  + G +  A ++ ESMP + D+  W S++
Sbjct: 273 --FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 318



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 39/226 (17%)

Query: 32  NHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFR 88
           N  S  SSL  C  +  L   K +H+  + + +  +   +L  + +  +A   D+  +  
Sbjct: 141 NKFSFASSLAACARLGDLHHAKWVHSLMIDSGI--ELNAILSSALVDVYAKCGDIGTSRE 198

Query: 89  VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           VFY ++  +   WN +I   A    A  +AI +F  M E  +V PD  TF   L  C++ 
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLA-TEAIRVFSEM-EAEHVSPDSITFLGLLTTCSHC 256

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
               +GK+    + +R       I   L H+ A                         M+
Sbjct: 257 GLLEEGKEYFGLMSRR-----FSIQPKLEHYGA-------------------------MV 286

Query: 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
           D   + G    A +L   M I  EPD   ++S+ S+        LG
Sbjct: 287 DLLGRAGRVKEAYELIESMPI--EPDVVIWRSLLSSSRTYKNPELG 330


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 207/569 (36%), Positives = 312/569 (54%), Gaps = 45/569 (7%)

Query: 82  DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141
           DL  A  +   + +  +  WN +I           +A  L +RM   G  L D++T+   
Sbjct: 223 DLVAARELLEGMTDHIAVAWNAMISGYVHR-GFYEEAFDLLRRMHSLGIQL-DEYTYTSV 280

Query: 142 LKACAYLFAFSQGKQAHAHIFKRGLVSD----VYINNSLIHFYASCGHLDLANKVFDNML 197
           + A +    F+ G+Q HA++ +  +       + +NN+LI  Y  CG L  A +VFD M 
Sbjct: 281 ISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMP 340

Query: 198 ERSLVSWN-------------------------------VMIDAFVQFGEFDSALKLFRR 226
            + LVSWN                               VMI    Q G  +  LKLF +
Sbjct: 341 VKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQ 400

Query: 227 MQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
           M++   EP  Y +    ++C+ L +L  G   H+ I++    S ++   V N+LI MY +
Sbjct: 401 MKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLS---VGNALITMYSR 457

Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
           CG ++ A  VF +MP  D  SWN++I   A HG    A++ +++++ +E   P+ ITF+ 
Sbjct: 458 CGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKML-KEDILPDRITFLT 516

Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
           +LSAC+H G+V EGR YFD M   Y ITP  +HY  L+DLL RAG   EA ++  +MP +
Sbjct: 517 ILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFE 576

Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
           P A IW +LL A C  H ++ L  + A +++E       G Y+ LS +YA+  +W++V  
Sbjct: 577 PGAPIWEALL-AGCWIHGNMELGIQAADRLLELMPQQ-DGTYISLSNMYAALGQWDEVAR 634

Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
           VRKLM ++GV KEPGCS IE++ + H F   D  HP+   +Y +L+ +  +++  GY PD
Sbjct: 635 VRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPD 694

Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
            ++  + D   + K+ +L  HSE+LA+  GI+ L  G  IRVFKNLR+C DCH   K IS
Sbjct: 695 -TKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 753

Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           ++ + EIIVRDR RFHHF++G CSC +YW
Sbjct: 754 KVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 181/419 (43%), Gaps = 82/419 (19%)

Query: 97  NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF-AFSQGK 155
           ++ ++N +I A + S D    A+ LF +M   G V PD  TF   L A + +    +  +
Sbjct: 94  DTVSYNAMITAFSHSHDGH-AALQLFVQMKRLGFV-PDPFTFSSVLGALSLIADEETHCQ 151

Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN---------KVFD------------ 194
           Q H  +FK G +S   + N+L+  Y SC    L N         K+FD            
Sbjct: 152 QLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAW 211

Query: 195 ---------------------NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
                                 M +   V+WN MI  +V  G ++ A  L RRM  L  +
Sbjct: 212 TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQ 271

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL-VNNSLIDMYCKCGSLDI 291
            D YT+ S+ SA +     ++G   HAY+LR         VL VNN+LI +Y +CG L  
Sbjct: 272 LDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVE 331

Query: 292 ARQVFESMPKRDLTSWNSI-------------------------------ILGFALHGRA 320
           AR+VF+ MP +DL SWN+I                               I G A +G  
Sbjct: 332 ARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFG 391

Query: 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380
           E  LK F+++ + E   P    + G +++C+  G +  G+     +I +      L    
Sbjct: 392 EEGLKLFNQMKL-EGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQII-QLGHDSSLSVGN 449

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            L+ + +R G ++ A  +   MP   D+V W +++ A   +H   V + ++ +++++ +
Sbjct: 450 ALITMYSRCGLVEAADTVFLTMPYV-DSVSWNAMI-AALAQHGHGVQAIQLYEKMLKED 506



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 41/336 (12%)

Query: 32  NHSSLLSSLTECKSMSQLKQIHAQALRTAL-PQQHKTLLIYSRIIH-FASFADLDYAFRV 89
            ++S++S+ +     +  +Q+HA  LRT + P  H  L + + +I  +     L  A RV
Sbjct: 276 TYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRV 335

Query: 90  FYQIENPNSFTWNTLIRAC--ARSVDAK----------------------------PQAI 119
           F ++   +  +WN ++  C  AR ++                               + +
Sbjct: 336 FDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGL 395

Query: 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF 179
            LF +M  +G + P  + +  A+ +C+ L +   G+Q H+ I + G  S + + N+LI  
Sbjct: 396 KLFNQMKLEG-LEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITM 454

Query: 180 YASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM---QILFEPDGY 236
           Y+ CG ++ A+ VF  M     VSWN MI A  Q G    A++L+ +M    IL  PD  
Sbjct: 455 YSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDIL--PDRI 512

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           TF +I SAC+    +  G   H +      + +  +    + LID+ C+ G    A+ V 
Sbjct: 513 TFLTILSACSHAGLVKEGR--HYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVT 570

Query: 297 ESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
           ESMP +     W +++ G  +HG  E  ++  DRL+
Sbjct: 571 ESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLL 606



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 66/314 (21%)

Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN--MLERSLVSWNVMIDAFVQFGEF 217
           ++F +    D+    +++  Y++ G++ LA+++F+   M  R  VS+N MI AF    + 
Sbjct: 52  YLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDG 111

Query: 218 DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD---HSLVTDV 273
            +AL+LF +M+ L F PD +TF S+  A + +A        H   L HC+      ++  
Sbjct: 112 HAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEE----THCQQL-HCEVFKWGALSVP 166

Query: 274 LVNNSLIDMYCKCGS---------LDIARQVFESMP--KRDLTSWNSIILGFALHGRAEA 322
            V N+L+  Y  C S         +  AR++F+  P  +RD  +W +II G+  +    A
Sbjct: 167 SVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVA 226

Query: 323 ALK-------------------YFDRLVVEESF-----------SPNSITFVGVLSACNH 352
           A +                   Y  R   EE+F             +  T+  V+SA ++
Sbjct: 227 ARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASN 286

Query: 353 RGMVSEGRDYFDVMINEYNITPVLEHYG--------CLVDLLARAGNIDEALHLVSNMPM 404
            G+ + GR      ++ Y +  V++  G         L+ L  R G + EA  +   MP+
Sbjct: 287 AGLFNIGRQ-----VHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPV 341

Query: 405 KPDAVIWRSLLDAC 418
           K D V W ++L  C
Sbjct: 342 K-DLVSWNAILSGC 354



 Score = 38.5 bits (88), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD 328
           L+ N LID YCK  ++  AR +F+ +PK D+ +  +++  ++  G  + A + F+
Sbjct: 32  LIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFN 86


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 312/549 (56%), Gaps = 34/549 (6%)

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +A   DLD A +VF ++   N  +W  LI   A+      +   LF  M+   +  P++ 
Sbjct: 2   YAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQH-GRSYECFSLFSDMLV--DCYPNEF 58

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA-SC-----GHLDLAN 190
            F   + +C Y+     GKQ HA   K GL++ VY+ N+LI  Y+ SC     G+   A 
Sbjct: 59  AFASVIISCDYVC----GKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEAC 114

Query: 191 KVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLA 249
           +VF++M  R+LVSWN MI A       + AL LFR++ +    PD  TF  +  ACAG  
Sbjct: 115 RVFESMEFRNLVSWNSMIAAE------EEALLLFRQLYREGLAPDWCTFSIVLKACAGFV 168

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
           T    +  ++ +++        D ++ N+LI  Y +CGS+  ++QVF+ M  RD+ SWNS
Sbjct: 169 TERHALAVYSQVVKA---GFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNS 225

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           +I  +ALHG+A+ AL  F  + V     P+S T V +LSAC+H G+V EG + FD M   
Sbjct: 226 MIKAYALHGQAKEALHLFSEMNVR----PDSATMVALLSACSHAGLVEEGINIFDSMSMN 281

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + ++P L+HY C+VD+L RAG + EA  L+S MPMKPD+V+W +LL + C+K+    L++
Sbjct: 282 HGVSPQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSS-CRKYGETQLAK 340

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
             A ++ E E G   G YV +S +Y S   +N+ GL+R  M    V KEPG S IEI+  
Sbjct: 341 LAADKLKELEPGNSLG-YVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENR 399

Query: 490 AHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER 549
            HEF +G   HPQ + IY  L  +  +LK  GY P+ S  A+ D  ++ KQ  L  HSE+
Sbjct: 400 VHEFASGGRRHPQREAIYAKLYSLIGQLKGVGYVPETS-LALQDIEEEHKQEQLYHHSEK 458

Query: 550 LAIALGILNLKP----GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           LA+   +++       G  IR+ KN+R+C DCH   KL S +   EI+VRD  RFHHFK+
Sbjct: 459 LALVFALMSEGSLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKN 518

Query: 606 GSCSCMDYW 614
             CSC DYW
Sbjct: 519 RMCSCNDYW 527



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 282 MYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341
           MY KCG LD ARQVF+ M +R++ SW ++I G+A HGR+      F  ++V+    PN  
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVD--CYPNEF 58

Query: 342 TFVGVLSACNH 352
            F  V+ +C++
Sbjct: 59  AFASVIISCDY 69


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 222/568 (39%), Positives = 309/568 (54%), Gaps = 64/568 (11%)

Query: 36  LLSSLTECKSMSQLKQIHAQALRTAL---PQQHKTL--------------LIYSR----- 73
           LL S  +  +  + KQIH   L+  L   P  H +L              L++S+     
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 74  -------IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMI 126
                  I  +     LD A R+F +I   ++ +WN +I   A+S   + +A+  FQ M 
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE-EALAFFQEM- 255

Query: 127 EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186
           ++ NV P++ T    L ACA   +   G    + I   GL S++ + N+LI  Y+ CG L
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 187 DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC 245
           D A  +F+ + E+ ++SWNVMI  +     +  AL LFR+MQ    EP+  TF SI  AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375

Query: 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305
           A L  L LG W HAYI +      +T+  +  SLIDMY KCG+++ A+QVF  M  + L 
Sbjct: 376 AYLGALDLGKWIHAYIDKKFLG--LTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLG 433

Query: 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365
           SWN++I G A+HG A  AL+ F R + +E F P+ ITFVGVLSAC+H G+V  GR  F  
Sbjct: 434 SWNAMISGLAMHGHANMALELF-RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSS 492

Query: 366 MINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
           M+ +Y+I+P L+HYGC++DLL RAG  DEA  L+ NM MKPD  IW SLL A C+ H +V
Sbjct: 493 MVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGA-CRVHGNV 551

Query: 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485
            L E  AK + E E     G YVLLS +YA+A RW+DV  +R  + DKG+ K        
Sbjct: 552 ELGEFAAKHLFELEPE-NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK-------- 602

Query: 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSR-GYTPDYSQAAMVDELDDGKQSSLR 544
                             + IY  LD ID+    R G  PD S+  + D  ++ K+ SL 
Sbjct: 603 -----------------XQDIYKMLDEIDQSFGERPGXVPDTSE-VLYDMDEEWKEGSLS 644

Query: 545 LHSERLAIALGILNLKPGMPIRVFKNLR 572
            HSE+LAIA G+++ KP   IR+ KNLR
Sbjct: 645 HHSEKLAIAFGLISTKPETTIRIVKNLR 672



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 232/443 (52%), Gaps = 51/443 (11%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF---ASFADLDYA 86
             NH SL + L+ CKS   LKQIH+Q ++T L   H T    S++I F   + F +L YA
Sbjct: 30  LQNHPSL-TLLSTCKSFQNLKQIHSQIIKTGL---HNTQFALSKLIEFCAISPFGNLSYA 85

Query: 87  FRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKAC 145
             +F  IE PN F WNT+IR    S+ + P  AI  + RM+  G V P+ +TFPF LK+C
Sbjct: 86  LLLFESIEQPNQFIWNTMIRG--NSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSC 142

Query: 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH-------------------- 185
           A + A  +GKQ H H+ K GL SD +++ SLI+ YA  G                     
Sbjct: 143 AKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFT 202

Query: 186 -----------LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEP 233
                      LD A ++F+ +  R  VSWN MI  + Q G F+ AL  F+ M+     P
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAP 262

Query: 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293
           +  T  ++ SACA   +L LG W  ++I    DH L +++ + N+LIDMY KCG LD AR
Sbjct: 263 NESTMVTVLSACAQSGSLELGNWVRSWIE---DHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHR 353
            +FE + ++D+ SWN +I G++     + AL  F R + + +  PN +TFV +L AC + 
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALF-RKMQQSNVEPNDVTFVSILPACAYL 378

Query: 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV-IWR 412
           G +  G+     +  ++        +  L+D+ A+ GNI+ A  + +   MKP ++  W 
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLGSWN 436

Query: 413 SLLDACCKKHASVVLSEEVAKQV 435
           +++      H    ++ E+ +Q+
Sbjct: 437 AMISGLA-MHGHANMALELFRQM 458



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 147/334 (44%), Gaps = 43/334 (12%)

Query: 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175
           P   + FQ   +    L   H     L  C    +F   KQ H+ I K GL +  +  + 
Sbjct: 13  PPPTLHFQPTSDPPYKLLQNHPSLTLLSTCK---SFQNLKQIHSQIIKTGLHNTQFALSK 69

Query: 176 LIHFYA--SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE 232
           LI F A    G+L  A  +F+++ + +   WN MI           A+  + RM +   E
Sbjct: 70  LIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVE 129

Query: 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS---- 288
           P+ YTF  +  +CA +     G   H ++L+     L +D  V+ SLI+MY + G     
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLK---LGLESDPFVHTSLINMYAQNGELGYA 186

Query: 289 ---------------------------LDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
                                      LD AR++FE +P RD  SWN++I G+A  GR E
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
            AL +F  +    + +PN  T V VLSAC   G +  G ++    I ++ +   L     
Sbjct: 247 EALAFFQEM-KRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNA 304

Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           L+D+ ++ G++D+A  L   +  K D + W  ++
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEK-DIISWNVMI 337


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 307/524 (58%), Gaps = 14/524 (2%)

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           +P+SF + +L RA AR     P A + F R +    +      F    KACA L A   G
Sbjct: 70  SPDSFLFCSLTRAAARR--GLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAG 127

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
              HAH    G  SD ++  +L+  Y+ CG LD+A K+FD + +RS+V+WN MI  + Q 
Sbjct: 128 MGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQN 187

Query: 215 GEFDSALKLFRRMQILFE-PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G    A++++R M++  E PD  TF +  SACA    L LG      I+      +  +V
Sbjct: 188 GLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIV---SERMEMNV 244

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
           ++  +L++MY +CG ++ AR+ F+ + +R++ +W S+I G+ +HG    A+K FD L+ +
Sbjct: 245 VLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFD-LMRQ 303

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393
           +   PN +TFV VLSAC H G+VS+GRD F  M + Y + P  EHY  +VD+  RAG +D
Sbjct: 304 QGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLD 363

Query: 394 EALHLV-SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           +A+  +  ++P +P   +W ++L A CK H +  L  EVA+++I  E    S   VLLS 
Sbjct: 364 DAMQFIHDSIPGEPGPEVWTAMLGA-CKMHKNFSLGVEVAERLIALEPENPSH-RVLLSN 421

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA + + N V  VR  M  + + K  G S IEI G+AH F  G+ SHP+T +IY +L+ 
Sbjct: 422 IYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEK 481

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG--MPIRVFKN 570
           +  ++   GY P+ + + + +  ++ ++ +LR H E+LA+A G++ +  G   PIR+ KN
Sbjct: 482 LIHRITDAGYMPE-TDSVLHELEEEEREFALRYHGEKLAVAFGLM-MTSGCTAPIRIIKN 539

Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           LR+C DCH   K +S + N EIIVRD  RFHHFK G CSC +YW
Sbjct: 540 LRICGDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 324/599 (54%), Gaps = 44/599 (7%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
           ++IH   LR+ +      +L  + +  +A   D   A R F  +   ++ +WN +IRAC 
Sbjct: 146 RRIHGWILRSGVCPD--VVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACL 203

Query: 110 RSVDA------------------------------KPQAIVLFQRMIEQGNVLPDKHTFP 139
           +  D                                 +A+   Q+M+  G V    +T+ 
Sbjct: 204 QDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAG-VTFSNYTYS 262

Query: 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD---NM 196
                   L +   G+Q H  +    L  D ++  SL+  Y  CG ++ A  +FD   + 
Sbjct: 263 MVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDF 322

Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-YTFQSITSACAGLATLSLGM 255
            E    +W+ M+  +VQ G  + AL+ FRRM     P G +   S+ SACA    +  G 
Sbjct: 323 TEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGR 382

Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
             H ++ +   H    D  + ++++DMY K GSL+ A ++F S   +++  W +++  +A
Sbjct: 383 QVHGFVEK-LGHRF--DAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYA 439

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
            HG+   AL+ F R+  E+   PN IT V VLSAC+H G+VS+G  YF++M  EY I P 
Sbjct: 440 SHGQGRMALEIFSRMKAEK-IMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPN 498

Query: 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435
            EHY C+VDL  RAG +D+A + +    +  +AV+W++LL AC + H  +  ++  ++++
Sbjct: 499 TEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSAC-RLHKHIEYAQLASEKL 557

Query: 436 IESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFA 495
           ++ E    +G YVL+S +YA+  +W D   +R  M ++ V K+PG S I +  + H F A
Sbjct: 558 VQLEQ-YDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVA 616

Query: 496 GDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALG 555
            DTSHP++ +IY +L+ + E+LK  GYT   +   + D  ++ +++SL+ HSE+LAIA G
Sbjct: 617 LDTSHPRSAEIYAYLEKLMERLKEMGYTSR-TDLVVHDIEEEQRETSLKFHSEKLAIAFG 675

Query: 556 ILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           I++   G  +R+FKNLRVC+DCHE  K I+R  + EI+VRD  RFHHFKDG CSC D+W
Sbjct: 676 IISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 188/427 (44%), Gaps = 68/427 (15%)

Query: 30  FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
           F++ + LL     C +    K IH Q++R  +P       + +R +H         A RV
Sbjct: 36  FHSSARLLPEAGACAAK---KAIHRQSVRGCVPSSS----VIARGLH--------NAHRV 80

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ-GNVLPDKHTFPFALKACAYL 148
           F      +   W ++I  CAR        +  F  M+++ G   P+       L+ CA L
Sbjct: 81  FDGTPTRSLPAWTSIISGCARE-GRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGL 139

Query: 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208
                G++ H  I + G+  DV + N+++  YA CG    A + F  M ++   SWN++I
Sbjct: 140 GDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVI 199

Query: 209 DAFVQFGEFDSALKLFR----------------------------RMQILFEP----DGY 236
            A +Q G+   A +LF                             R+Q +         Y
Sbjct: 200 RACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNY 259

Query: 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296
           T+  + +    L++  LG   H  ++      L  D  V  SL+DMYCKCG ++ A  +F
Sbjct: 260 TYSMVFALAGLLSSRDLGRQLHGRVVVAV---LEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 297 ESMPKRDLT-----SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351
           +     D T     +W++++ G+  +GR E AL++F R+ + E           V SAC 
Sbjct: 317 DRWS--DFTEDRQFAWSTMVAGYVQNGREEEALEFFRRM-LREGVPAGQFILTSVASACA 373

Query: 352 HRGMVSEGRD---YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
           + GMV +GR    + + + + ++  P+      +VD+ +++G++++A  +  +   K + 
Sbjct: 374 NAGMVEQGRQVHGFVEKLGHRFD-APLAS---AIVDMYSKSGSLEDACRIFRSAQTK-NV 428

Query: 409 VIWRSLL 415
            +W ++L
Sbjct: 429 ALWTTML 435



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
           +S+ S+      + Q +Q+H       L  +    L  + +  ++    L+ A R+F   
Sbjct: 366 TSVASACANAGMVEQGRQVHG--FVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSA 423

Query: 94  ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
           +  N   W T++ + A     +  A+ +F RM  +  ++P++ T    L AC++    S 
Sbjct: 424 QTKNVALWTTMLCSYASHGQGR-MALEIFSRMKAE-KIMPNEITLVAVLSACSHSGLVSD 481

Query: 154 GKQAHAHIF-----KRGLVSDVYINNSLIHFYASCGHLDLA-NKVFDNMLERSLVSWNVM 207
           G     H F     + G+V +    N ++  Y   G LD A N + +N +    V W  +
Sbjct: 482 GY----HYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTL 537

Query: 208 IDA 210
           + A
Sbjct: 538 LSA 540


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 320/570 (56%), Gaps = 23/570 (4%)

Query: 52  IHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACAR 110
           +H Q +RT        L + + ++  +A   ++  A  VF ++   +   W  +I     
Sbjct: 154 VHGQVVRTGFGSD---LFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMI-TLYE 209

Query: 111 SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA---HAHIFKRGLV 167
             +   +A++LF++M E+G  L D+ T   A+   + +     G+ A   H +    G +
Sbjct: 210 QAERPLKALMLFRKMQEEG-FLGDEIT---AISVASAVGQLGDGRMAISVHGYAVLNGFI 265

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
            DV + NS++  YA CG+++ A  VFD M ER+ +SWN M+  + Q G    AL LF +M
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325

Query: 228 QIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
           Q    +P+  T   + SAC+ L +  LG   H +++      +  D  + N+++DMY KC
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVI---SSKMDIDTTLRNAIMDMYMKC 382

Query: 287 GSLDIARQVFES--MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344
           G LD A ++F +  + +RD++SWN +I G+ +HG  + AL+ F R+ VE    PN ITF 
Sbjct: 383 GDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE-GVEPNDITFT 441

Query: 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
            +LSAC+H G++ EGR  F  M  + ++ P ++HY C+VD+L RAG ++EA  L+  +P 
Sbjct: 442 SILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPS 500

Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
           +P   +W +LL AC + H +  L E  A  + + E    +G YVL+S +YA++ +W +V 
Sbjct: 501 RPSDEVWGALLLAC-RIHGNTELGEIAANNLFQLEPE-HTGYYVLMSNIYAASNKWKEVE 558

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
           +VR+ M  +G+ K    S IE     H F   D S P  +++Y  ++ +  ++K  GY P
Sbjct: 559 MVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVP 618

Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
           D S   + D   + K+  L  HSE+LA+A GI+ +  GMPI+V KNLRVC DCH   K I
Sbjct: 619 DLS-CVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFI 677

Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           S I+  +IIVRD  RFHHF+ G CSC DYW
Sbjct: 678 SSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 197/386 (51%), Gaps = 20/386 (5%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVF--------YQIE 94
           C S++ LK IH+ +L T     H    +   II ++   DL  A  +F           +
Sbjct: 35  CTSLTTLKLIHS-SLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQ 93

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
            PNSF  NT++RA A +     +AI L+  M   G V  +  T+PF LK CA       G
Sbjct: 94  APNSFLCNTMLRAYANA-GRSYEAIDLYIYMQRMG-VGVNNFTYPFVLKVCASELGAVFG 151

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H  + + G  SD+++  +L+  YA CG +  A++VFD ML R +V W  MI  + Q 
Sbjct: 152 EVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQA 211

Query: 215 GEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
                AL LFR+MQ   F  D  T  S+ SA   L    + +  H Y +    +  + DV
Sbjct: 212 ERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVL---NGFIGDV 268

Query: 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333
            V NS++ MY KCG+++ AR VF+ M +R+  SWNS++ G+  +GR   AL  F+++   
Sbjct: 269 SVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 328

Query: 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI-NEYNITPVLEHYGCLVDLLARAGNI 392
           E   PN +T + ++SAC++ G    GR   + +I ++ +I   L +   ++D+  + G++
Sbjct: 329 EC-DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMKCGDL 385

Query: 393 DEALHLVSNMPM-KPDAVIWRSLLDA 417
           D A+ + +N  + + D   W  L+  
Sbjct: 386 DTAVEMFNNCELGERDVSSWNVLISG 411


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 314/578 (54%), Gaps = 34/578 (5%)

Query: 50  KQIHAQALRTALPQQHKTLLIYSRIIHFASFADL--DYAFR-----VFYQIENPNSFTWN 102
           KQIH  AL+  +        IY   +  + F D+     FR     +F ++   N  TWN
Sbjct: 128 KQIHGLALKGGM--------IYDVFVGCSCF-DMYCKTGFRGDACNMFDEMPQRNLATWN 178

Query: 103 TLIRACA---RSVDAKPQAIVLFQRMI-EQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
             I       RS+DA    IV F+  +   G   P+  TF   L AC  +   + G+Q H
Sbjct: 179 AYISNAVQDRRSLDA----IVAFKEFLCVHGE--PNSITFCAFLNACVDMVRLNLGRQLH 232

Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVSWNVMIDAFVQFGEF 217
           A I + G   DV + N LI FY  CG +  A  VF+ +  R ++VSW  M+ A VQ  E 
Sbjct: 233 AFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEE 292

Query: 218 DSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
           + A  +F + +   EP  +   S+ SACA L  L LG   HA  ++ C   +  ++ V +
Sbjct: 293 ERACMVFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKAC---VEDNIFVGS 349

Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV-EESF 336
           +L+DMY KCGS++ A QVF  +P+R+L +WN++I G+A  G  + AL+ F+ + +     
Sbjct: 350 ALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGI 409

Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
            P+ +T + +LS C+  G V  G   F+ M   Y I P  EH+ C+VDLL R+G +D A 
Sbjct: 410 RPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAY 469

Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
             + NM ++P   +W +LL AC + H    L +  A+++ E +  + SG +V+LS + AS
Sbjct: 470 EFIQNMAIQPTISVWGALLGAC-RMHGKTELGKIAAEKLFELDH-VDSGNHVVLSNMLAS 527

Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
           A RW +  +VRK M D G+ K  G S I +    H F A D+SH +  +I   L  +   
Sbjct: 528 AGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGG 587

Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
           +K  GY PD +  ++ D  D+ K S +  HSE++A+A G++ L  G+PIR+ KNLR+C D
Sbjct: 588 MKEAGYVPD-TNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGD 646

Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           CH   K ISRI   EIIVRD  RFH FKDG CSC DYW
Sbjct: 647 CHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 174/391 (44%), Gaps = 26/391 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRT---ALPQQHKTLLIYSRIIHFASFADL-DYAFRV 89
            SLL S          + IHA  +RT    LP       + + +++  S  DL + A  V
Sbjct: 10  GSLLESAVSTHCSILGRTIHAHIIRTHVTPLPS-----FLSNHLVNMYSKLDLLNSAQHV 64

Query: 90  FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
                     TW +LI  C  +    P A++ F  M  + NV P+  TFP   KA A++ 
Sbjct: 65  LSLTHLRTVVTWTSLISGCVHNRRFLP-ALLHFTNM-RRDNVQPNDFTFPCVFKASAFVQ 122

Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
               GKQ H    K G++ DV++  S    Y   G    A  +FD M +R+L +WN  I 
Sbjct: 123 IPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYIS 182

Query: 210 AFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268
             VQ      A+  F+  + +  EP+  TF +  +AC  +  L+LG   HA+I+R C + 
Sbjct: 183 NAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVR-CGYK 241

Query: 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFALHGRAEAALKYF 327
              DV V N LID Y KCG +  A  VF  +  R ++ SW S++     +   E A   F
Sbjct: 242 --EDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF 299

Query: 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITPVLEHYGCLVD 384
             L   +   P       VLSAC   G +  GR    + +    E NI         LVD
Sbjct: 300 --LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFV----GSALVD 353

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           +  + G+I+ A  + S +P + + V W +++
Sbjct: 354 MYGKCGSIENAEQVFSELPER-NLVTWNAMI 383



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 12/199 (6%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQ 92
           SS+LS+  E   +   + +HA A++  +      + + S ++  +     ++ A +VF +
Sbjct: 314 SSVLSACAELGGLELGRSVHALAVKACVEDN---IFVGSALVDMYGKCGSIENAEQVFSE 370

Query: 93  IENPNSFTWNTLIRACARSVDAKPQAIVLFQRM-IEQGNVLPDKHTFPFALKACAYLFAF 151
           +   N  TWN +I   A   D    A+ LF+ M +    + P   T    L  C+ + A 
Sbjct: 371 LPERNLVTWNAMIGGYAHQGDID-MALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAV 429

Query: 152 SQGKQAHAHI-FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMID 209
            +G Q    +    G+         ++      G +D A +   NM ++ ++  W  ++ 
Sbjct: 430 ERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLG 489

Query: 210 AFVQFGEFD----SALKLF 224
           A    G+ +    +A KLF
Sbjct: 490 ACRMHGKTELGKIAAEKLF 508


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 290/494 (58%), Gaps = 12/494 (2%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFA-FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++Q  VLPDK  F   L AC    A    GK  H+ + + GL S+  +  +L++ Y   G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI----LFEPDGYTFQS 240
            LD A +VF  +  + LVSW  ++ A+ +   +  AL+LFR M +      +PD   F  
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           +  ACA L+  + G  AH  I + C +   +D ++   +I+MY KCG+L  A +VF+ M 
Sbjct: 121 LLQACATLSAAAEGRLAHRRI-QECGYD-SSDGVLGLGIINMYGKCGNLRAAHEVFDGMS 178

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +RD  +W +II G+A HG +E +L  F R+  + S  P+ ++ + VLS C+H G+V +G 
Sbjct: 179 ERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGS-KPDGVSLLCVLSVCSHAGLVEQGW 237

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           D+F  +  E+ + P  +HYGC++DLL R+G+++ A  ++  MP +  A+ W   L A CK
Sbjct: 238 DFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFL-AACK 296

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H+     +  A++V+E E       YV LS +YA+A  W+ V  VR  M   G+ K+PG
Sbjct: 297 VHSDTERGKRAAEKVLELE--PVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPG 354

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            SSIE++   HEF+AGD SHP+  +IYG L+ +  +++  GY PD ++  +++  ++ K+
Sbjct: 355 RSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPD-TKLVLLNVSEEQKE 413

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
             L  HSE+LAIA G+L+   G  +R+ KNLRVC DCH   K +SRI   EI +RD  RF
Sbjct: 414 RLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRF 473

Query: 601 HHFKDGSCSCMDYW 614
           HHF+DG CSC DYW
Sbjct: 474 HHFQDGHCSCGDYW 487



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 155/351 (44%), Gaps = 14/351 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECK-SMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
           + EG   +    +++L  C  +++ L   K IH+  L   L  +  T++  + +  +   
Sbjct: 2   QQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGL--ESNTVVATALVNMYGKA 59

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--NVLPDKHTF 138
             LD A RVF  +E  +  +W  L+ A +R  D   +A+ LF+ M   G     PD+  F
Sbjct: 60  GCLDEATRVFRGLERKDLVSWTALMSAYSRE-DLYREALQLFREMTLHGLDGTKPDRSYF 118

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNML 197
            F L+ACA L A ++G+ AH  I + G   SD  +   +I+ Y  CG+L  A++VFD M 
Sbjct: 119 AFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMS 178

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMW 256
           ER  V+W  +I  +   G  + +L +F RMQ    +PDG +   + S C+    +  G  
Sbjct: 179 ERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWD 238

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFA 315
               I +  +  +         +ID+  + G L+ A  +   MP +    +W   +    
Sbjct: 239 FFLDITK--EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACK 296

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +H   E   +  ++++  E      ++   + +A      V   R     M
Sbjct: 297 VHSDTERGKRAAEKVLELEPVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAM 347


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 296/542 (54%), Gaps = 18/542 (3%)

Query: 74  IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP 133
           I  +A   DL  A R+F +    + FTW  ++ A  +      +A  +F  M       P
Sbjct: 226 ISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD-GMLDEARRVFDEM-------P 277

Query: 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193
            K    + +    Y  A  +       +F+     ++   N +I  Y   G L  A  +F
Sbjct: 278 QKREMSYNVMIAGY--AQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLF 335

Query: 194 DNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP-DGYTFQSITSACAGLATLS 252
           D M +R  VSW  +I  + Q G ++ A+ +   M+   E  +  TF    SACA +A L 
Sbjct: 336 DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALE 395

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL 312
           LG   H  ++R          LV N+L+ MYCKCG +D A  VF+ +  +D+ SWN+++ 
Sbjct: 396 LGKQVHGQVVRT---GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLA 452

Query: 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI 372
           G+A HG    AL  F+ ++      P+ IT VGVLSAC+H G+   G +YF  M  +Y I
Sbjct: 453 GYARHGFGRQALTVFESMITA-GVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGI 511

Query: 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVA 432
           TP  +HY C++DLL RAG ++EA +L+ NMP +PDA  W +LL A  + H ++ L E+ A
Sbjct: 512 TPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGAS-RIHGNMELGEQAA 570

Query: 433 KQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHE 492
           + V + E    SG+YVLLS +YA++ RW DV  +R  M   GV K PG S +E+    H 
Sbjct: 571 EMVFKMEPH-NSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHT 629

Query: 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAI 552
           F  GD  HP+  +IY FL+ +D K+K  GY    ++  + D  ++ K+  L+ HSE+LA+
Sbjct: 630 FTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSS-TKLVLHDVEEEEKKHMLKYHSEKLAV 688

Query: 553 ALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612
           A GIL +  G PIRV KNLRVC+DCH   K IS+I    IIVRD  R+HHF +G CSC D
Sbjct: 689 AFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRD 748

Query: 613 YW 614
           YW
Sbjct: 749 YW 750



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 137/337 (40%), Gaps = 62/337 (18%)

Query: 84  DYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143
           D A  VF  +   NS ++N +I    R+      A  LF +M       P K  F + L 
Sbjct: 50  DLALCVFDAMPLRNSVSYNAMISGYLRNAKFS-LARDLFDKM-------PHKDLFSWNLM 101

Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
              Y  A ++  +    +F      DV   N+++  Y   GH+D A  VFD M  ++ +S
Sbjct: 102 LTGY--ARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSIS 159

Query: 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263
           WN ++ A+V+ G  + A +LF                           S   W       
Sbjct: 160 WNGLLAAYVRSGRLEEARRLFE--------------------------SKSDW------- 186

Query: 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323
                   +++  N L+  Y K   L  ARQ+F+ +P RDL SWN++I G+A  G    A
Sbjct: 187 --------ELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA 238

Query: 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383
            + F+   V + F     T+  ++ A    GM+ E R  FD M  +  ++     Y  ++
Sbjct: 239 RRLFEESPVRDVF-----TWTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMI 288

Query: 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
              A+   +D    L   MP  P+   W  ++   C+
Sbjct: 289 AGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQ 324



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 144/335 (42%), Gaps = 27/335 (8%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           +D A  VF ++ + NS +WN L+ A  RS            R+ E   +   K  +    
Sbjct: 142 VDEARDVFDRMPHKNSISWNGLLAAYVRS-----------GRLEEARRLFESKSDWELIS 190

Query: 143 KACAYLFAFSQGKQAHA-HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL 201
             C       +     A  +F +  V D+   N++I  YA  G L  A ++F+    R +
Sbjct: 191 CNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV 250

Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
            +W  M+ A+VQ G  D A ++F  M    E    ++  + +  A    + +G       
Sbjct: 251 FTWTAMVYAYVQDGMLDEARRVFDEMPQKRE---MSYNVMIAGYAQYKRMDMGR------ 301

Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
               +     ++   N +I  YC+ G L  AR +F+ MP+RD  SW +II G+A +G  E
Sbjct: 302 -ELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYE 360

Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD-YFDVMINEYNITPVLEHYG 380
            A+     +   +  S N  TF   LSAC     +  G+  +  V+   Y    ++ +  
Sbjct: 361 EAMNMLVEM-KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGN-- 417

Query: 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
            LV +  + G IDEA  +   +  K D V W ++L
Sbjct: 418 ALVGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTML 451



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 33/240 (13%)

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITS 243
           GH DLA  VFD M  R+ VS+N MI  +++  +F  A  LF +M      D +++     
Sbjct: 47  GHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP---HKDLFSW----- 98

Query: 244 ACAGLATLSLGMWAHAYILRHC----DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
                  L L  +A    LR      D     DV+  N+++  Y + G +D AR VF+ M
Sbjct: 99  ------NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM 152

Query: 300 PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359
           P ++  SWN ++  +   GR E A + F+     E  S N +     +     R M+ + 
Sbjct: 153 PHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCL-----MGGYVKRNMLGDA 207

Query: 360 RDYFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           R  FD +       PV  L  +  ++   A+ G++ +A  L    P++ D   W +++ A
Sbjct: 208 RQLFDQI-------PVRDLISWNTMISGYAQDGDLSQARRLFEESPVR-DVFTWTAMVYA 259



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 41/257 (15%)

Query: 25  RNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH-FASF 80
           + +G   N S+   +L+ C  ++ L   KQ+H Q +RT      K  L+ + ++  +   
Sbjct: 370 KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGY---EKGCLVGNALVGMYCKC 426

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
             +D A+ VF  +++ +  +WNT++   AR    + QA+ +F+ MI  G V PD+ T   
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGR-QALTVFESMITAG-VKPDEITMVG 484

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
            L AC++     +G +     +   +  D  I  +  H+  +C                 
Sbjct: 485 VLSACSHTGLTDRGTE-----YFHSMNKDYGITPNSKHY--AC----------------- 520

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260
                 MID   + G  + A  L R M   FEPD  T+ ++  A      + LG  A   
Sbjct: 521 ------MIDLLGRAGCLEEAQNLIRNMP--FEPDAATWGALLGASRIHGNMELGEQAAEM 572

Query: 261 ILRHCDHSLVTDVLVNN 277
           + +   H+    VL++N
Sbjct: 573 VFKMEPHNSGMYVLLSN 589



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
           I  + + G  D+A  VF++MP R+  S+N++I G+  + +   A   FD++  ++ FS N
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99

Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
            +   G   A N R  + + R  FD M  +  ++     +  ++    R+G++DEA  + 
Sbjct: 100 -LMLTGY--ARNRR--LRDARMLFDSMPEKDVVS-----WNAMLSGYVRSGHVDEARDVF 149

Query: 400 SNMPMKPDAVIWRSLLDA 417
             MP K +++ W  LL A
Sbjct: 150 DRMPHK-NSISWNGLLAA 166


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 293/513 (57%), Gaps = 43/513 (8%)

Query: 43  CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS--FADLDYAFRVFYQIENPNSFT 100
           C SM  L++IHAQ ++T L    K  +  SR++ F +    D++YA+ VF QI NPN F 
Sbjct: 6   CTSMKDLQKIHAQLIKTGLA---KDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFV 62

Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
           WNT+IR  ++S        +    M       P + T+P   KA A L    +G Q H  
Sbjct: 63  WNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGR 122

Query: 161 IFKRGLVSDVYINNSLIHFY-------------------------------ASCGHLDLA 189
           + K GL +D +I N++++ Y                               A CG +D +
Sbjct: 123 VIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKS 182

Query: 190 NKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248
            ++FD ML R+ VSWN MI  +V+ G F  A++LF RMQ    +P  +T  S+ +ACA L
Sbjct: 183 RRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACL 242

Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
             L  G W H YI+++   +   + +V  ++IDMY KCGS+D A QVF+S PK+ L+ WN
Sbjct: 243 GALRQGEWIHDYIVKN---NFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWN 299

Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
           S+ILG A+ GR   A++ F +L    +  P+ ++F+GVL+ACNH GMV   +DYF +M  
Sbjct: 300 SLILGLAMSGRGNEAVRLFSKLE-SSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE 358

Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
            Y I P ++HY C+VD+L RAG ++EA  L+ +MP+ PDA+IW SLL + C+++ ++ ++
Sbjct: 359 TYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSS-CREYGNIEMA 417

Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
           ++ AK+V E +    S  ++LLS VYA+   + +    R  + +K + KEPGCS IE++G
Sbjct: 418 KQAAKRVNELDPNESSS-FILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNG 476

Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRG 521
             HEF AG   HP++K IY  LD +   LK  G
Sbjct: 477 EVHEFVAGGRLHPRSKDIYHALDDLGLTLKEMG 509


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/489 (39%), Positives = 286/489 (58%), Gaps = 19/489 (3%)

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           P    F  ALKACA L     G+  HA + K     D  +NN L+  Y  C   +   KV
Sbjct: 28  PGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKV 87

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA---CAGLA 249
           FD M ER++ SWN +I  FV+  +   AL +FRRMQ   E  G+++ ++T+    CA + 
Sbjct: 88  FDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ--REGMGFSWVTLTTILPICARVT 145

Query: 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNS 309
            L  G   HA I++        DVLV NSL+DMY KCG +D  R++F+ M  +DLTSWN+
Sbjct: 146 ALLSGKEIHAQIVKSARRP---DVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNT 202

Query: 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369
           ++ G+A++G    A+  F+ +       P+ +TF+ +LS C+H G+  +G+  F  M  +
Sbjct: 203 MLTGYAINGYMRVAMDLFNEMA-SCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMD 261

Query: 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSE 429
           + ++P LEHY CLVD+L RAG ID AL +V NMPMK    IW SLL++C + H  V L+E
Sbjct: 262 FGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSC-RLHNEVPLAE 320

Query: 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGI 489
            +A ++ E E     G YV+LS +YA+A  W+ V +VR++M  + + KE GCS I++   
Sbjct: 321 AIANRLFELEP-YNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNK 379

Query: 490 AHEFFAGD----TSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRL 545
            H F AG      +  + K+I+   + + E ++  GY P+ +   + D  ++ K   +  
Sbjct: 380 IHSFVAGGGFEFRNSDEYKKIW---NKLREAMEEFGYIPN-TDVVLHDVNEETKAMWVCG 435

Query: 546 HSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKD 605
           HSERLA    +++   GMPIR+ KNLRVC DCH   K++SR+    I++RD  RFHHFK+
Sbjct: 436 HSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKE 495

Query: 606 GSCSCMDYW 614
           G+CSC DYW
Sbjct: 496 GACSCNDYW 504



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 144/320 (45%), Gaps = 35/320 (10%)

Query: 38  SSLTECKSMSQL---KQIHAQALRTAL-PQQ---HKTLLIYSRIIHFASFADLDYAFRVF 90
           ++L  C  + +L   + +HAQ ++++  P Q   +  L +Y++   F      +   +VF
Sbjct: 35  TALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECF------NEVLKVF 88

Query: 91  YQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150
            Q+   N  +WN+LI    +  D   +A+ +F+RM  +G       T    L  CA + A
Sbjct: 89  DQMPERNVASWNSLISGFVKE-DKLGEALDVFRRMQREGMGF-SWVTLTTILPICARVTA 146

Query: 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDA 210
              GK+ HA I K     DV + NSL+  Y  CG +D   ++FD M  + L SWN M+  
Sbjct: 147 LLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTG 206

Query: 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDH 267
           +   G    A+ LF  M      PD  TF ++ S C  AGL      ++          H
Sbjct: 207 YAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLF----------H 256

Query: 268 SLVTDVLVNNS------LIDMYCKCGSLDIARQVFESMPKRDLTS-WNSIILGFALHGRA 320
            +  D  V+ S      L+DM  + G +D A  V ++MP +   S W S++    LH   
Sbjct: 257 RMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEV 316

Query: 321 EAALKYFDRLVVEESFSPNS 340
             A    +RL   E ++P +
Sbjct: 317 PLAEAIANRLFELEPYNPGN 336



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290
            EP  + F +   ACA L  L +G   HA +++  +     D +VNN L+ +Y +C   +
Sbjct: 26  MEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP---DQVVNNGLLRLYTQCECFN 82

Query: 291 IARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
              +VF+ MP+R++ SWNS+I GF    +   AL  F R+   E    + +T   +L  C
Sbjct: 83  EVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRM-QREGMGFSWVTLTTILPIC 141

Query: 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVI 410
                +  G++    ++       VL     LVD+  + G +D    L   M  K D   
Sbjct: 142 ARVTALLSGKEIHAQIVKSARRPDVLV-LNSLVDMYVKCGVVDYGRRLFDGMRSK-DLTS 199

Query: 411 WRSLL 415
           W ++L
Sbjct: 200 WNTML 204



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 21/241 (8%)

Query: 20  IFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76
           +F   + EG   +  +L + L  C  ++ L   K+IHAQ +++A  ++   L++ S +  
Sbjct: 118 VFRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSA--RRPDVLVLNSLVDM 175

Query: 77  FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
           +     +DY  R+F  + + +  +WNT++   A +   +  A+ LF  M   G + PD  
Sbjct: 176 YVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRV-AMDLFNEMASCG-IRPDDV 233

Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF------YASCGHLDLAN 190
           TF   L  C++      G++    +F R +  D  ++ SL H+          G +D A 
Sbjct: 234 TFIALLSGCSHAGLTEDGQK----LFHR-MEMDFGVSPSLEHYACLVDMLGRAGRIDAAL 288

Query: 191 KVFDNM-LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAG 247
            V  NM ++ S   W  ++++     E   A  +  R+  L  + P  Y   S   A AG
Sbjct: 289 VVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAG 348

Query: 248 L 248
           +
Sbjct: 349 M 349


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/582 (35%), Positives = 327/582 (56%), Gaps = 13/582 (2%)

Query: 37  LSSLTECKSMSQLKQIH--AQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           +++L +    S LK++   A +   AL   +   ++ S +  +++  D   A  VF  + 
Sbjct: 249 MANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMC 308

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + +  +WN +I    ++    P++  LF+R+++ G+   D  T    ++ C+       G
Sbjct: 309 SRSLISWNAMISGYVQN-GMIPESYALFRRLVQSGSGF-DSGTLVSLIRGCSQTSDLENG 366

Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQF 214
           +  H+ I ++ L S + ++ +++  Y+ CG +  A  VF  M ++++++W  M+    Q 
Sbjct: 367 RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQN 426

Query: 215 GEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273
           G  + ALKLF +MQ      +  T  S+   CA L +L+ G   HA+ +RH       D 
Sbjct: 427 GYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRH---GYAFDA 483

Query: 274 LVNNSLIDMYCKCGSLDIARQVFES-MPKRDLTSWNSIILGFALHGRAEAALKYFDRLVV 332
           ++ ++LIDMY KCG +  A ++F +    +D+   NS+I+G+ +HG    AL  + R++ 
Sbjct: 484 VITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMI- 542

Query: 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392
           EE   PN  TFV +L+AC+H G+V EG+  F  M  ++++ P  +HY CLVDL +RAG +
Sbjct: 543 EERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRL 602

Query: 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452
           +EA  LV  MP +P   +  +LL  C + H +  +  ++A ++I S   + SG+YV+LS 
Sbjct: 603 EEADELVKQMPFQPSTDVLEALLSGC-RTHKNTNMGIQIADRLI-SLDYLNSGIYVMLSN 660

Query: 453 VYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDL 512
           +YA AR+W  V  +R LM  +G+ K PG S IE+    + FFA D SHP    IY  L+ 
Sbjct: 661 IYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLEN 720

Query: 513 IDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLR 572
           +  ++++ GY PD S   + D  +  K   L  HSERLAIA G+L+   G  I++ KNLR
Sbjct: 721 LRLEVEAEGYIPDTS-CVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLR 779

Query: 573 VCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           VC DCH VTK IS+I   EIIVRD  RFHHF +G CSC D+W
Sbjct: 780 VCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 187/369 (50%), Gaps = 12/369 (3%)

Query: 51  QIHAQALRTALPQQ-HKTLLIYSRIIHF-ASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
           ++  + +R A+ +  H  L + S +++F      L  A +VF  +   +   WN++I   
Sbjct: 162 EVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGY 221

Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
            +      ++I +F  MI  G + P   T    LKAC        G  AH+++   G+ +
Sbjct: 222 VQK-GLFWESIQMFLEMI-GGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN 279

Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM- 227
           DV++  SL+  Y++ G    A  VFD+M  RSL+SWN MI  +VQ G    +  LFRR+ 
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
           Q     D  T  S+   C+  + L  G   H+ I+R     L + ++++ +++DMY KCG
Sbjct: 340 QSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIR---KELESHLVLSTAIVDMYSKCG 396

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347
           ++  A  VF  M K+++ +W ++++G + +G AE ALK F ++  EE  + NS+T V ++
Sbjct: 397 AIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQM-QEEKVAANSVTLVSLV 455

Query: 348 SACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406
             C H G +++GR      I   Y    V+     L+D+ A+ G I  A  L +N     
Sbjct: 456 HCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLK 513

Query: 407 DAVIWRSLL 415
           D ++  S++
Sbjct: 514 DVILCNSMI 522



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 181/389 (46%), Gaps = 13/389 (3%)

Query: 30  FNNHSSLLSSLTE--CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAF 87
           FN   S+ SSL      ++  +K IHAQ ++  +  +  + L    I  ++    L +A 
Sbjct: 42  FNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTE--SFLAAKLIRVYSDLGFLGHAR 99

Query: 88  RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147
            VF Q   P +   N +I    R  + +   +    RM+   ++  + +T  FALKAC  
Sbjct: 100 NVFDQCSLPETAVCNAMIAGFLR--NQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTD 157

Query: 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207
           L     G +      +RG    +Y+ +S+++F    G+L  A KVFD M E+ +V WN +
Sbjct: 158 LLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSI 217

Query: 208 IDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266
           I  +VQ G F  ++++F  M      P   T  ++  AC       +GM AH+Y+L    
Sbjct: 218 IGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLA--- 274

Query: 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY 326
             +  DV V  SL+DMY   G    A  VF+SM  R L SWN++I G+  +G    +   
Sbjct: 275 LGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYAL 334

Query: 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386
           F RLV   S   +S T V ++  C+    +  GR     +I +  +   L     +VD+ 
Sbjct: 335 FRRLVQSGS-GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRK-ELESHLVLSTAIVDMY 392

Query: 387 ARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           ++ G I +A  +   M  K + + W ++L
Sbjct: 393 SKCGAIKQATIVFGRMG-KKNVITWTAML 420


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 212/613 (34%), Positives = 330/613 (53%), Gaps = 56/613 (9%)

Query: 9   GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQAL-RTALPQQ 64
           G   PQ  S  +F   + EG      +++S L     +  L   KQIH   + R  L   
Sbjct: 132 GNSCPQ-ESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLG-- 188

Query: 65  HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
              + I++ +   +A   +++ A  +F  +   N  +WN +I   A+  + +P+  +   
Sbjct: 189 --NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK--NGQPEKCIGLL 244

Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
             +     +PD+ T                                    +++I  Y  C
Sbjct: 245 HQMRLSGHMPDQVTM-----------------------------------STIIAAYCQC 269

Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSIT 242
           G +D A +VF    E+ +V W  M+  + + G  + AL LF  M +   EPD YT  S+ 
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVV 329

Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
           S+CA LA+L  G   H    +     L  ++LV+++LIDMY KCG +D AR VF  MP R
Sbjct: 330 SSCAKLASLHHGQAVHG---KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTR 386

Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
           ++ SWN++I+G A +G  + AL+ F+ ++ ++ F P+++TF+G+LSAC H   + +G++Y
Sbjct: 387 NVVSWNAMIVGCAQNGHDKDALELFENML-QQKFKPDNVTFIGILSACLHCNWIEQGQEY 445

Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
           FD + N++ +TP L+HY C+V+LL R G I++A+ L+ NM   PD +IW +LL  C  K 
Sbjct: 446 FDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTK- 504

Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
             +V +E  A+ + E +  I +  Y++LS +YAS  RW DV  VR LM  K V K  G S
Sbjct: 505 GDIVNAEVAARHLFELDPTI-AVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
            IEID   H F + D +HP+++ IY  L+++  KL+  G+TP+ +   + D  +D K  S
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPN-TNLVLHDVGEDEKFKS 622

Query: 543 LRLHSERLAIALGILNLKPGM-PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
           +  HSE+LA+A G++    G+ PIR+ KN+R+C DCHE  K  SRI   +II+RD  RFH
Sbjct: 623 ICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFH 682

Query: 602 HFKDGSCSCMDYW 614
           HF  G CSC D W
Sbjct: 683 HFSTGKCSCNDNW 695



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 191/419 (45%), Gaps = 89/419 (21%)

Query: 42  ECKSMSQLKQIHAQALRTALPQ---QHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPN 97
           EC   +++ Q  A+ L++ +     Q     ++++++H +A F  L  A  +F ++   +
Sbjct: 31  ECVRTNEINQ--AKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRD 88

Query: 98  SFTWNTLIRACARS---------VDAKP---------------------QAIVLFQRMIE 127
            F+WN L+ A A+S          D  P                     +++ LF+RM  
Sbjct: 89  XFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQR 148

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187
           +G   P ++T    L A A L     GKQ H  I  R  + +V+I N+L   YA CG ++
Sbjct: 149 EG-FEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSITSACA 246
            A  +FD + +++LVSWN+MI  + + G+ +  + L  +M++    PD  T  +I +A  
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA-- 265

Query: 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTS 306
                                               YC+CG +D AR+VF    ++D+  
Sbjct: 266 ------------------------------------YCQCGRVDEARRVFSEFKEKDIVC 289

Query: 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN-----HRGMVSEGRD 361
           W ++++G+A +GR E AL  F+ +++E    P+S T   V+S+C      H G    G+ 
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHGKS 348

Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
               + N   ++        L+D+ ++ G ID+A  + + MP + + V W +++  C +
Sbjct: 349 ILAGLNNNLLVSSA------LIDMYSKCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQ 400


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 203/535 (37%), Positives = 306/535 (57%), Gaps = 9/535 (1%)

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140
            DL  A +VF ++ +    TWN +I    +  +   + + LF+ M   G   PD++T   
Sbjct: 124 GDLVNARKVFDEMPDRKLTTWNAMIAGLIQ-FEFNEEGLSLFREMHGLG-FSPDEYTLGS 181

Query: 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
                A L + S G+Q H +  K GL  D+ +N+SL H Y   G L     V  +M  R+
Sbjct: 182 VFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRN 241

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
           LV+WN +I    Q G  ++ L L++ M+I    P+  TF ++ S+C+ LA    G   HA
Sbjct: 242 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 301

Query: 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGR 319
             ++       + V V +SLI MY KCG L  A + F      D   W+S+I  +  HG+
Sbjct: 302 EAIKI---GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQ 358

Query: 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY 379
            + A++ F+ +  + +   N + F+ +L AC+H G+  +G + FD+M+ +Y   P L+HY
Sbjct: 359 GDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHY 418

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439
            C+VDLL RAG +D+A  ++ +MP+K D VIW++LL A C  H +  +++ V K++++ +
Sbjct: 419 TCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSA-CNIHKNAEMAQRVFKEILQID 477

Query: 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTS 499
               S  YVLL+ V+ASA+RW DV  VRK M DK V KE G S  E  G  H+F  GD S
Sbjct: 478 PND-SACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRS 536

Query: 500 HPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNL 559
             ++K+IY +L  +  ++K +GY PD + + + D  ++ K+S L  HSE+LA+A  ++ L
Sbjct: 537 QSKSKEIYSYLKELTLEMKLKGYKPD-TASVLHDMDEEEKESDLVQHSEKLAVAFALMIL 595

Query: 560 KPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
             G PIR+ KNLRVC DCH   K IS I N EI +RD +RFHHF +G CSC DYW
Sbjct: 596 PEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 153/328 (46%), Gaps = 40/328 (12%)

Query: 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181
           FQR   + N+  +   F   +++C    +   GKQ H  +   G  SD +I N L+  Y+
Sbjct: 33  FQRF--RLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYS 90

Query: 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF------------------------ 217
             G    A  V+  M +++ +S N++I+ +V+ G+                         
Sbjct: 91  KLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAG 150

Query: 218 -------DSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
                  +  L LFR M  L F PD YT  S+ S  AGL ++S+G   H Y ++   + L
Sbjct: 151 LIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK---YGL 207

Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
             D++VN+SL  MY + G L     V  SMP R+L +WN++I+G A +G  E  L Y  +
Sbjct: 208 ELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVL-YLYK 266

Query: 330 LVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389
           ++      PN ITFV VLS+C+   +  +G+      I +   + V+     L+ + ++ 
Sbjct: 267 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI-KIGASSVVAVVSSLISMYSKC 325

Query: 390 GNIDEALHLVSNMPMKPDAVIWRSLLDA 417
           G + +A    S      D V+W S++ A
Sbjct: 326 GCLGDAAKAFSERE-DEDEVMWSSMISA 352



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 5/195 (2%)

Query: 35  SLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIE 94
           ++LSS ++     Q +QIHA+A++         +     I  ++    L  A + F + E
Sbjct: 282 TVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSL--ISMYSKCGCLGDAAKAFSERE 339

Query: 95  NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
           + +   W+++I A         +AI LF  M EQ N+  ++  F   L AC++     +G
Sbjct: 340 DEDEVMWSSMISAYGFHGQGD-EAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKG 398

Query: 155 KQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-LERSLVSWNVMIDAFV 212
            +     + K G    +     ++      G LD A  +  +M ++  +V W  ++ A  
Sbjct: 399 LELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACN 458

Query: 213 QFGEFDSALKLFRRM 227
                + A ++F+ +
Sbjct: 459 IHKNAEMAQRVFKEI 473


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 209/537 (38%), Positives = 308/537 (57%), Gaps = 25/537 (4%)

Query: 83  LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
           L  A  +F ++   N   W ++I   A +       + + +++ E   V+PDK+   +  
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMN-----NKVDVARKLFE---VMPDKNEVTWT- 237

Query: 143 KACAYLFAFSQGKQAH--AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS 200
              A L  +++  + +  A +FK   V  V   N +I  +   G +  A  VFD M E+ 
Sbjct: 238 ---AMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKD 294

Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHA 259
             +W+ +I  + + G    AL LF  MQ     P+  +  SI S C  LA+L  G   H+
Sbjct: 295 DGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHS 354

Query: 260 YILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 318
            ++R H D     D+ V++ LI MY KCG L   ++VF+    +D+  WNSII G+A HG
Sbjct: 355 QLVRSHFD----LDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHG 410

Query: 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378
             E AL+ F  +      +P+ ITF+GVLSAC + G V EG + F+ M ++Y +    EH
Sbjct: 411 FGEKALEVFHEMF-SSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEH 469

Query: 379 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438
           Y C+VDLL RAG ++EA++L+ NMP++ DA++W +LL AC + H ++ L+E  AK++++ 
Sbjct: 470 YACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSAC-RTHKNLDLAEIAAKKLLQL 528

Query: 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 498
           E    +G Y+LLS +YAS  RW DV  +RK M  + V+K PGCS IE+D   H F  G +
Sbjct: 529 EPS-SAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGS 587

Query: 499 -SHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGIL 557
            SHP+ + I   L+ +   L+  GY PD S   M D  ++ K  SLR HSE++A+A G+L
Sbjct: 588 ASHPEHEMIMKKLEKLGASLREAGYCPDGS-FVMHDVDEEDKVHSLRHHSEKMAVAYGLL 646

Query: 558 NLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
            +  G PIRV KNLRVC DCH   KLI+++   EII+RD  RFHHFKDG CSC D+W
Sbjct: 647 KVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 146/344 (42%), Gaps = 64/344 (18%)

Query: 73  RIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNV 131
           +I +FA    +D A  +F  +++    +WN ++       + +P +A  LF +M      
Sbjct: 22  QISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFH--NKRPAEAQKLFDKM------ 73

Query: 132 LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191
            P+++T  +                                 N L+  Y   G +  A K
Sbjct: 74  -PERNTISW---------------------------------NGLVSGYVKNGMISEARK 99

Query: 192 VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251
           VFD M ER++VSW  M+  +VQ G  D A  LF RM     P+     S T    GL  +
Sbjct: 100 VFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM-----PEKNVV-SWTVMLGGL--I 151

Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
             G    A   R  D   V DV+ + ++I   C  G L  AR++F+ MP+R++ +W S+I
Sbjct: 152 EDGRVDEAR--RLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMI 209

Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
            G+A++ + + A K F+ +        N +T+  +L      G ++E  + F  M     
Sbjct: 210 SGYAMNNKVDVARKLFEVMP-----DKNEVTWTAMLKGYTRSGRINEAAELFKAM----P 260

Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
           + PV    G ++      G + +A  +   M  K D   W +L+
Sbjct: 261 VKPVAACNGMIMG-FGLNGEVGKARWVFDQMKEKDDGT-WSALI 302



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 128/319 (40%), Gaps = 59/319 (18%)

Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
           S   I    I ++A  G +D A  +FD++  +++ SWN ++  +        A KLF +M
Sbjct: 14  SSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM 73

Query: 228 QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287
               E +  ++  + S       +  GM + A   +  D     +V+   S++  Y + G
Sbjct: 74  P---ERNTISWNGLVS-----GYVKNGMISEAR--KVFDKMPERNVVSWTSMVRGYVQEG 123

Query: 288 SLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFD------------------- 328
            +D A  +F  MP++++ SW  ++ G    GR + A + FD                   
Sbjct: 124 LIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCS 183

Query: 329 -------RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM--INEYNITPVLEHY 379
                  R + +E    N + +  ++S       V   R  F+VM   NE   T +L+ Y
Sbjct: 184 EGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGY 243

Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK------ 433
                   R+G I+EA  L   MP+KP A        AC        L+ EV K      
Sbjct: 244 -------TRSGRINEAAELFKAMPVKPVA--------ACNGMIMGFGLNGEVGKARWVFD 288

Query: 434 QVIESEGGICSGVYVLLSR 452
           Q+ E + G  S +  +  R
Sbjct: 289 QMKEKDDGTWSALIKIYER 307



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 155/366 (42%), Gaps = 30/366 (8%)

Query: 53  HAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS- 111
            AQ L   +P+++ T+     +  +     +  A +VF ++   N  +W +++R   +  
Sbjct: 65  EAQKLFDKMPERN-TISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEG 123

Query: 112 -VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH-IFKRGLVSD 169
            +D   +A +LF RM       P+K+   + +     +     G+   A  +F    V D
Sbjct: 124 LID---EAELLFWRM-------PEKNVVSWTVMLGGLI---EDGRVDEARRLFDMIPVKD 170

Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
           V  + ++I    S G L  A ++FD M +R++V+W  MI  +    + D A KLF  M  
Sbjct: 171 VVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM-- 228

Query: 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289
              PD     + T+   G  T S  +   A + +      V  V   N +I  +   G +
Sbjct: 229 ---PDKNEV-TWTAMLKGY-TRSGRINEAAELFKAMP---VKPVAACNGMIMGFGLNGEV 280

Query: 290 DIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349
             AR VF+ M ++D  +W+++I  +   G    AL  F  L+  E   PN  + + +LS 
Sbjct: 281 GKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFS-LMQREGVRPNFPSIISILSV 339

Query: 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409
           C     +  GR     ++  +    +      L+ +  + G++     +      K D V
Sbjct: 340 CGSLASLDHGRQVHSQLVRSHFDLDIYVS-SVLITMYIKCGDLVTGKRVFDRFSSK-DIV 397

Query: 410 IWRSLL 415
           +W S++
Sbjct: 398 MWNSII 403



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 45/265 (16%)

Query: 19  SIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSR-- 73
           ++F+  + EG   N  S++S L+ C S++ L   +Q+H+Q +R+     H  L IY    
Sbjct: 316 ALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRS-----HFDLDIYVSSV 370

Query: 74  -IIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL 132
            I  +    DL    RVF +  + +   WN++I   A+    + +A+ +F  M   G   
Sbjct: 371 LITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGE-KALEVFHEMFSSG-AA 428

Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
           PD+ TF   L AC Y     +G +    IF+  + S   ++    H+  +C         
Sbjct: 429 PDEITFIGVLSACGYTGKVKEGLE----IFE-SMKSKYQVDQKTEHY--AC--------- 472

Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252
                         M+D   + G+ + A+ L   M +  E D   + ++ SAC     L 
Sbjct: 473 --------------MVDLLGRAGKLNEAMNLIENMPV--EADAIVWGALLSACRTHKNLD 516

Query: 253 LGMWAHAYILRHCDHSLVTDVLVNN 277
           L   A   +L+    S    +L++N
Sbjct: 517 LAEIAAKKLLQLEPSSAGPYILLSN 541


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 290/494 (58%), Gaps = 12/494 (2%)

Query: 126 IEQGNVLPDKHTFPFALKACAYLFA-FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184
           ++Q  VLPDK  F   L AC    A    GK  H+ + + GL S+  +  +L++ Y   G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI----LFEPDGYTFQS 240
            LD A +VF  +  + LVSW  ++ A+ +   +  AL+LFR M +      +PD   F  
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300
           +  ACA L+  + G  AH  I + C +   +D ++   +I+MY KCG+L  A +VF+ M 
Sbjct: 121 LLQACATLSAAAEGRLAHRRI-QECGYD-SSDGVLGLGIINMYGKCGNLRAAHEVFDGMS 178

Query: 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360
           +RD  +W +II G+A HG +E +L  F R+  + S  P+ ++ + VLS C+H G+V +G 
Sbjct: 179 ERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGS-KPDGVSLLCVLSVCSHAGLVEQGW 237

Query: 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420
           D+F  +  E+ + P  +HYGC++DLL R+G+++ A  ++  MP +  A+ W   L A CK
Sbjct: 238 DFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFL-AACK 296

Query: 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPG 480
            H+     +  A++V+E E       YV LS +YA+A  W+ V  VR  M   G+ K+PG
Sbjct: 297 VHSDTERGKRAAEKVLELE--PVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPG 354

Query: 481 CSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQ 540
            SSIE++   HEF+AGD SHP+  +IYG L+ +  +++  GY PD ++  +++  ++ K+
Sbjct: 355 RSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPD-TKLVLLNVSEEQKE 413

Query: 541 SSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARF 600
             L  HSE+LAIA G+L+   G  +R+ KNLRVC DCH   K +SRI   EI +RD  RF
Sbjct: 414 RLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRF 473

Query: 601 HHFKDGSCSCMDYW 614
           HHF+DG CSC DYW
Sbjct: 474 HHFQDGHCSCGDYW 487



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 14/351 (3%)

Query: 25  RNEGSFNNHSSLLSSLTECK-SMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF 80
           + EG   +    +++L  C  +++ L   K IH+  L   L  +  T++  + +  +   
Sbjct: 2   QQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGL--ESNTVVATALVNMYGKA 59

Query: 81  ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG--NVLPDKHTF 138
             LD A RVF  +   +  +W  L+ A +R  D   +A+ LF+ M   G     PD+  F
Sbjct: 60  GCLDEATRVFRGLGRKDLVSWTALMSAYSRE-DLYREALQLFREMTLHGLDGTKPDRSYF 118

Query: 139 PFALKACAYLFAFSQGKQAHAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNML 197
            F L+ACA L A ++G+ AH  I + G   SD  +   +I+ Y  CG+L  A++VFD M 
Sbjct: 119 AFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMS 178

Query: 198 ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI-LFEPDGYTFQSITSACAGLATLSLGMW 256
           ER  V+W  +I  +   G  + +L +F RMQ    +PDG +   + S C+    +  G  
Sbjct: 179 ERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWD 238

Query: 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KRDLTSWNSIILGFA 315
               I +  +  +         +ID+  + G L+ A  +   MP +    +W   +    
Sbjct: 239 FFLDITK--EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACK 296

Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366
           +H   E   +  ++++  E      ++   + +A      V   R     M
Sbjct: 297 VHSDTERGKRAAEKVLELEPVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAM 347


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 216/591 (36%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 34  SSLLSSLTECKSMSQLKQIHAQALR----TALPQQHKTLLIYSRIIHFASFADLDYAFRV 89
           + LL +L+  +++ + +Q+H   L+     A+   H  LL +  +  +A  +  + + R 
Sbjct: 19  AELLVALSAARALPKGQQLHGHLLKGGHLPAVASSH-ALLAHHLLTFYARCSLPELSLRA 77

Query: 90  FYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148
           F  +  +P+   W++LI + A++      A   F+RM+  G    D+   P A    A  
Sbjct: 78  FLDLPASPSPAAWSSLISSFAQN-GLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAA 136

Query: 149 FAFSQGKQAHA-HIF--KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
            +       HA H    K     DV++ ++++  YA CG+L  A +VFD M ER++VSW+
Sbjct: 137 DSSRPPLAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWS 196

Query: 206 VMIDAFVQFGEFDSALKLFRR-MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264
            +I  +   G   SAL +FR  ++   + + +T   I   CA      LG   HA   R 
Sbjct: 197 ALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVHA---RS 253

Query: 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324
              +L     V +SL+ +Y KCG +D A +VF + P+R+L  WN++++  A HG    A 
Sbjct: 254 IKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQHGHTSTAF 313

Query: 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384
           + F ++     F PN ITF+ +L+AC+H G+V EG+ YF +M  EY I P +EHY  +VD
Sbjct: 314 ERFTKMQ-HAGFRPNFITFLCLLTACSHAGLVDEGKRYFSLM-KEYRIEPEVEHYAAMVD 371

Query: 385 LLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444
           LL R G I EAL L+ +MPM+P   +W +LL AC +       +   AK++ E+ G   S
Sbjct: 372 LLGRVGRITEALDLIESMPMEPPDSVWGALLMAC-RMFKDADTAAIAAKRLFET-GSRSS 429

Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
           G ++LLS  YA+A R  D  L RK M D G+ KE G S +E  G  H F +    HP++ 
Sbjct: 430 GAHMLLSSTYAAAGRHVDAALARKAMRDAGIRKETGLSWLEAAGEVHTFVSNCRRHPRSN 489

Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD-DGKQSSLRLHSERLAIALGILNLKPGM 563
           +IY  L+ + EK+   GY  D S  A+V ++D D K +SL  HSERLAIALG+L +  G+
Sbjct: 490 EIYNVLEKVGEKMAVAGYVADTS--AVVKDVDRDEKCASLGYHSERLAIALGLLIVPEGV 547

Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
           PIRV KNLRVC DCH   K +S+     +++RD  RFH F+DG CSC D+W
Sbjct: 548 PIRVMKNLRVCDDCHNAVKYLSKCTGRVVVLRDNRRFHRFEDGLCSCGDFW 598


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,412,200,436
Number of Sequences: 23463169
Number of extensions: 374392923
Number of successful extensions: 1262566
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6850
Number of HSP's successfully gapped in prelim test: 4178
Number of HSP's that attempted gapping in prelim test: 1112423
Number of HSP's gapped (non-prelim): 41999
length of query: 614
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 465
effective length of database: 8,863,183,186
effective search space: 4121380181490
effective search space used: 4121380181490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)