BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038206
         (614 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
           Inhibitor A02
 pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
           Inhibitor T03
 pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
           Inhibitor T07
          Length = 288

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           + + G    PG ++ E+D IAHE+   + ++P T    GF
Sbjct: 64  LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 103


>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
           Aminopeptidase Suggests A Mode Of Interaction With The
           Ribosome
 pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
           Aminopeptidase Type 1c From Mycobacterium Tuberculosis
          Length = 291

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           + + G    PG ++ E+D IAHE+   + ++P T    GF
Sbjct: 67  LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 106


>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
           Tuberculosis Methionine Aminopeptidase
          Length = 291

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           + + G    PG ++ E+D IAHE+   + ++P T    GF
Sbjct: 67  LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 106


>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
           Form
 pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
           Form
 pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
           Form
 pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
           Form
 pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
           Form
          Length = 285

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 470 MTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           + + G    PG ++ E+D IAHE+   + ++P T    GF
Sbjct: 61  LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 100


>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
          Length = 362

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 128 QGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170
           QGN +P++ TFP  +KA A           HA   K G+ SD 
Sbjct: 62  QGNFVPNRQTFPSGIKALA--------DYVHAKGLKLGIYSDA 96


>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
           Plasmodium Falciparum, Pf10_0150
          Length = 368

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509
           L RK +        PG ++ EID   HEF   + ++P T   Y F
Sbjct: 118 LGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKF 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,380,606
Number of Sequences: 62578
Number of extensions: 667548
Number of successful extensions: 1737
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 6
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)