Query 038206
Match_columns 614
No_of_seqs 697 out of 4451
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7E-118 2E-122 973.5 65.2 599 1-614 93-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-114 6E-119 967.2 65.9 595 1-612 259-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.7E-77 1E-81 667.2 46.0 575 1-609 158-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-63 2.3E-68 548.8 53.2 438 31-481 435-917 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-63 7.6E-68 544.8 51.5 497 2-527 377-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.5E-63 9.9E-68 541.6 41.3 487 96-608 85-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-24 3.3E-29 248.0 49.6 447 4-474 406-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-24 9.2E-29 244.3 49.4 447 2-473 370-832 (899)
9 PF14432 DYW_deaminase: DYW fa 99.9 4.6E-27 9.9E-32 190.1 7.7 106 480-604 2-116 (116)
10 PRK11788 tetratricopeptide rep 99.9 1.3E-18 2.9E-23 178.7 32.1 298 107-444 44-353 (389)
11 PRK11447 cellulose synthase su 99.8 2.9E-16 6.4E-21 181.2 49.7 493 4-526 121-747 (1157)
12 PRK11447 cellulose synthase su 99.8 1.4E-15 3.1E-20 175.6 51.5 406 50-477 289-745 (1157)
13 PRK11788 tetratricopeptide rep 99.8 1.5E-17 3.2E-22 171.0 31.1 291 144-480 44-354 (389)
14 KOG4626 O-linked N-acetylgluco 99.8 7.6E-17 1.6E-21 158.5 31.2 376 69-462 117-508 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-15 3.1E-20 164.8 40.1 384 74-473 133-571 (615)
16 PRK10049 pgaA outer membrane p 99.8 4.9E-14 1.1E-18 155.7 46.0 391 36-445 21-462 (765)
17 PRK10049 pgaA outer membrane p 99.8 3.2E-14 7E-19 157.1 44.1 393 69-473 16-456 (765)
18 PRK15174 Vi polysaccharide exp 99.8 1.9E-14 4.2E-19 155.5 41.4 326 102-441 46-384 (656)
19 KOG4626 O-linked N-acetylgluco 99.7 8.6E-16 1.9E-20 151.2 26.4 356 98-472 116-484 (966)
20 PRK09782 bacteriophage N4 rece 99.7 3E-13 6.6E-18 149.7 47.2 441 1-473 84-706 (987)
21 KOG4422 Uncharacterized conser 99.7 1.4E-13 3.1E-18 130.2 37.4 345 88-441 198-593 (625)
22 TIGR00990 3a0801s09 mitochondr 99.7 1E-13 2.2E-18 150.4 41.4 369 50-441 147-574 (615)
23 PRK15174 Vi polysaccharide exp 99.7 5.5E-14 1.2E-18 152.0 38.6 327 134-473 41-381 (656)
24 PRK09782 bacteriophage N4 rece 99.7 3.5E-12 7.5E-17 141.4 45.1 438 9-476 122-743 (987)
25 PRK14574 hmsH outer membrane p 99.7 5.6E-12 1.2E-16 137.0 44.5 392 73-472 73-512 (822)
26 PRK14574 hmsH outer membrane p 99.7 2.1E-12 4.6E-17 140.2 41.0 392 69-473 36-479 (822)
27 KOG4422 Uncharacterized conser 99.6 1.1E-11 2.3E-16 117.7 30.5 355 98-475 116-553 (625)
28 KOG2002 TPR-containing nuclear 99.6 1.4E-11 3E-16 128.4 33.6 399 64-473 268-745 (1018)
29 KOG2003 TPR repeat-containing 99.5 1.5E-11 3.3E-16 117.3 26.1 202 248-459 503-709 (840)
30 KOG2002 TPR-containing nuclear 99.5 1.5E-09 3.2E-14 113.7 37.7 385 82-475 251-677 (1018)
31 PF13429 TPR_15: Tetratricopep 99.4 7.8E-13 1.7E-17 128.9 10.7 194 272-471 77-275 (280)
32 PRK10747 putative protoheme IX 99.4 2.2E-10 4.8E-15 116.9 28.0 283 113-438 98-390 (398)
33 KOG1915 Cell cycle control pro 99.4 9.8E-09 2.1E-13 99.2 34.9 413 81-515 87-535 (677)
34 KOG2076 RNA polymerase III tra 99.4 2E-09 4.4E-14 111.9 32.6 314 149-471 153-510 (895)
35 TIGR00540 hemY_coli hemY prote 99.4 3.8E-10 8.3E-15 115.8 27.2 289 113-438 98-399 (409)
36 PRK10747 putative protoheme IX 99.4 3.8E-09 8.2E-14 107.9 33.8 274 183-471 97-388 (398)
37 TIGR00540 hemY_coli hemY prote 99.4 4.7E-09 1E-13 107.8 34.5 280 147-471 96-397 (409)
38 KOG0495 HAT repeat protein [RN 99.3 9.2E-08 2E-12 96.1 39.9 457 4-486 415-891 (913)
39 KOG1126 DNA-binding cell divis 99.3 3.9E-10 8.4E-15 113.6 22.5 273 185-472 334-619 (638)
40 PF13429 TPR_15: Tetratricopep 99.3 7.5E-12 1.6E-16 121.9 9.9 81 146-228 55-137 (280)
41 KOG0495 HAT repeat protein [RN 99.3 1.1E-07 2.3E-12 95.7 38.5 373 82-472 391-781 (913)
42 PF13041 PPR_2: PPR repeat fam 99.3 7.9E-12 1.7E-16 85.6 6.7 50 302-352 1-50 (50)
43 KOG2076 RNA polymerase III tra 99.3 3.5E-08 7.7E-13 102.9 35.0 315 80-402 152-509 (895)
44 KOG4318 Bicoid mRNA stability 99.3 2E-10 4.4E-15 118.5 17.2 262 223-529 12-274 (1088)
45 KOG1915 Cell cycle control pro 99.2 4.4E-07 9.4E-12 88.1 38.2 355 47-415 124-547 (677)
46 KOG1155 Anaphase-promoting com 99.2 6.7E-08 1.5E-12 93.4 32.5 282 142-436 234-534 (559)
47 KOG0547 Translocase of outer m 99.2 2.4E-08 5.1E-13 97.1 29.5 350 103-470 120-563 (606)
48 KOG1126 DNA-binding cell divis 99.2 1.8E-09 3.9E-14 108.9 22.5 275 151-442 335-624 (638)
49 PF13041 PPR_2: PPR repeat fam 99.2 1.7E-11 3.6E-16 84.0 5.6 50 96-147 1-50 (50)
50 KOG2003 TPR repeat-containing 99.2 2.3E-08 5E-13 95.9 27.3 253 210-473 428-689 (840)
51 COG3071 HemY Uncharacterized e 99.2 1.2E-07 2.6E-12 90.4 31.6 288 113-441 98-393 (400)
52 KOG4318 Bicoid mRNA stability 99.2 4E-09 8.6E-14 109.2 23.3 255 120-392 11-287 (1088)
53 COG2956 Predicted N-acetylgluc 99.2 6E-08 1.3E-12 89.6 27.0 278 100-418 38-325 (389)
54 KOG1155 Anaphase-promoting com 99.2 1.4E-07 3.1E-12 91.2 30.5 301 113-438 241-553 (559)
55 COG3071 HemY Uncharacterized e 99.1 5.8E-08 1.2E-12 92.5 25.8 285 70-402 84-387 (400)
56 TIGR02521 type_IV_pilW type IV 99.1 2.2E-08 4.9E-13 94.4 23.1 197 272-472 30-231 (234)
57 COG2956 Predicted N-acetylgluc 99.1 5.1E-08 1.1E-12 90.0 23.6 285 183-480 48-354 (389)
58 KOG1173 Anaphase-promoting com 99.0 2.1E-07 4.6E-12 92.3 25.8 261 200-471 243-516 (611)
59 TIGR02521 type_IV_pilW type IV 99.0 1.3E-07 2.7E-12 89.3 23.6 155 279-437 71-231 (234)
60 KOG1174 Anaphase-promoting com 99.0 8E-06 1.7E-10 78.3 34.1 363 72-446 101-507 (564)
61 KOG2376 Signal recognition par 99.0 1.6E-05 3.5E-10 79.7 37.0 435 3-469 20-516 (652)
62 PRK12370 invasion protein regu 99.0 2.3E-07 5E-12 99.1 26.0 178 114-299 276-467 (553)
63 PRK12370 invasion protein regu 99.0 5.6E-07 1.2E-11 96.2 28.5 260 200-474 255-536 (553)
64 KOG1840 Kinesin light chain [C 99.0 3.4E-07 7.3E-12 93.6 25.3 236 235-471 199-477 (508)
65 KOG1173 Anaphase-promoting com 98.9 1.8E-06 3.9E-11 85.9 27.5 276 107-418 253-532 (611)
66 KOG1840 Kinesin light chain [C 98.8 3.1E-07 6.7E-12 93.8 19.7 231 136-366 200-476 (508)
67 KOG3785 Uncharacterized conser 98.8 2.6E-05 5.6E-10 73.3 29.4 374 81-475 71-492 (557)
68 KOG0547 Translocase of outer m 98.7 2.7E-05 5.9E-10 76.3 28.6 217 212-439 337-567 (606)
69 PF12569 NARP1: NMDA receptor- 98.7 0.00015 3.2E-09 75.4 35.8 385 69-469 39-516 (517)
70 KOG1129 TPR repeat-containing 98.7 6.8E-07 1.5E-11 82.7 16.4 197 271-473 254-458 (478)
71 PRK11189 lipoprotein NlpI; Pro 98.7 2.2E-06 4.9E-11 83.7 21.2 189 274-474 65-266 (296)
72 KOG2047 mRNA splicing factor [ 98.7 0.00041 8.8E-09 70.6 36.4 394 69-471 139-613 (835)
73 KOG4162 Predicted calmodulin-b 98.7 0.00035 7.7E-09 72.6 35.9 395 61-473 319-783 (799)
74 KOG1129 TPR repeat-containing 98.7 1.5E-06 3.2E-11 80.6 17.1 229 205-442 227-462 (478)
75 PF12854 PPR_1: PPR repeat 98.7 3.4E-08 7.4E-13 60.6 4.3 34 164-197 1-34 (34)
76 KOG2047 mRNA splicing factor [ 98.7 0.00041 8.9E-09 70.6 34.8 173 69-248 103-294 (835)
77 KOG3785 Uncharacterized conser 98.7 3.9E-05 8.4E-10 72.1 25.9 371 80-471 35-455 (557)
78 PRK11189 lipoprotein NlpI; Pro 98.7 1.4E-05 3E-10 78.2 24.4 91 138-229 67-160 (296)
79 PF12854 PPR_1: PPR repeat 98.7 3.6E-08 7.9E-13 60.5 4.0 33 268-300 2-34 (34)
80 PF12569 NARP1: NMDA receptor- 98.6 2.6E-05 5.7E-10 80.9 27.2 126 342-471 196-332 (517)
81 KOG3616 Selective LIM binding 98.6 5.9E-05 1.3E-09 77.3 26.9 181 268-473 819-1024(1636)
82 cd05804 StaR_like StaR_like; a 98.6 0.00021 4.5E-09 72.4 31.4 25 276-300 189-213 (355)
83 PF04733 Coatomer_E: Coatomer 98.6 1E-05 2.2E-10 78.1 20.3 156 277-441 106-268 (290)
84 KOG1156 N-terminal acetyltrans 98.6 0.0013 2.7E-08 67.3 35.2 378 81-475 55-470 (700)
85 KOG1156 N-terminal acetyltrans 98.6 0.00045 9.8E-09 70.4 31.9 388 69-475 9-436 (700)
86 cd05804 StaR_like StaR_like; a 98.5 0.00029 6.3E-09 71.3 31.2 197 276-474 117-337 (355)
87 COG3063 PilF Tfp pilus assembl 98.5 1.7E-05 3.7E-10 70.5 17.8 161 307-475 38-204 (250)
88 KOG3616 Selective LIM binding 98.5 0.00011 2.4E-09 75.4 25.8 191 245-468 742-932 (1636)
89 KOG1070 rRNA processing protei 98.5 1.5E-05 3.2E-10 87.3 20.6 201 269-477 1454-1667(1710)
90 KOG1174 Anaphase-promoting com 98.5 0.0016 3.5E-08 63.0 32.4 295 96-406 191-502 (564)
91 KOG0985 Vesicle coat protein c 98.4 0.0017 3.6E-08 69.6 32.9 252 183-471 1088-1339(1666)
92 PF04733 Coatomer_E: Coatomer 98.4 7.6E-06 1.7E-10 78.9 14.7 191 270-472 63-264 (290)
93 KOG1070 rRNA processing protei 98.4 7.8E-05 1.7E-09 81.9 22.3 224 202-436 1459-1698(1710)
94 COG3063 PilF Tfp pilus assembl 98.3 0.00018 3.8E-09 64.2 20.5 186 204-398 38-229 (250)
95 KOG1125 TPR repeat-containing 98.3 1.4E-05 3.1E-10 80.1 15.3 217 246-471 296-525 (579)
96 PRK04841 transcriptional regul 98.3 0.0019 4.1E-08 74.4 35.1 329 108-441 384-763 (903)
97 KOG1127 TPR repeat-containing 98.3 0.00033 7.2E-09 74.7 25.2 397 50-469 476-909 (1238)
98 KOG4162 Predicted calmodulin-b 98.3 0.0014 2.9E-08 68.5 28.0 408 21-441 311-786 (799)
99 PRK04841 transcriptional regul 98.3 0.0014 3.1E-08 75.4 32.1 326 147-474 386-761 (903)
100 KOG2376 Signal recognition par 98.2 0.0075 1.6E-07 61.3 31.5 404 40-473 19-487 (652)
101 KOG3617 WD40 and TPR repeat-co 98.2 0.0013 2.8E-08 68.8 26.8 154 60-228 720-885 (1416)
102 KOG1128 Uncharacterized conser 98.2 7.4E-05 1.6E-09 77.1 17.8 229 268-524 393-623 (777)
103 KOG4340 Uncharacterized conser 98.2 0.00096 2.1E-08 61.6 23.0 303 138-469 13-335 (459)
104 TIGR03302 OM_YfiO outer membra 98.2 0.00027 5.8E-09 66.8 20.1 180 274-473 34-232 (235)
105 KOG0624 dsRNA-activated protei 98.2 0.0041 8.9E-08 58.8 26.0 184 247-441 167-373 (504)
106 KOG0548 Molecular co-chaperone 98.2 0.0021 4.7E-08 64.4 25.6 95 81-180 16-114 (539)
107 KOG4340 Uncharacterized conser 98.2 0.0022 4.8E-08 59.3 23.8 278 74-365 16-335 (459)
108 KOG3617 WD40 and TPR repeat-co 98.1 0.0051 1.1E-07 64.6 28.4 201 69-299 758-993 (1416)
109 PRK10370 formate-dependent nit 98.1 0.00035 7.5E-09 63.6 18.3 118 353-473 52-173 (198)
110 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 51.5 4.3 34 306-340 2-35 (35)
111 PRK10370 formate-dependent nit 98.0 0.00028 6.1E-09 64.2 15.5 155 75-241 23-184 (198)
112 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.3E-10 50.2 4.3 35 99-135 1-35 (35)
113 KOG0985 Vesicle coat protein c 98.0 0.044 9.6E-07 59.3 38.4 142 304-469 1104-1245(1666)
114 TIGR03302 OM_YfiO outer membra 98.0 0.00079 1.7E-08 63.6 18.2 182 232-440 30-234 (235)
115 KOG0624 dsRNA-activated protei 98.0 0.019 4.1E-07 54.5 28.8 293 81-402 52-367 (504)
116 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.4E-10 49.1 4.0 33 305-338 2-34 (34)
117 PRK15359 type III secretion sy 97.9 0.00029 6.4E-09 60.5 13.2 92 379-472 27-120 (144)
118 KOG1128 Uncharacterized conser 97.9 0.00057 1.2E-08 70.8 17.0 215 167-402 395-613 (777)
119 COG4783 Putative Zn-dependent 97.9 0.013 2.7E-07 58.5 25.6 176 288-471 252-435 (484)
120 PRK15359 type III secretion sy 97.9 0.00046 9.9E-09 59.3 14.3 113 336-454 22-136 (144)
121 PF13812 PPR_3: Pentatricopept 97.9 2.6E-05 5.6E-10 48.1 4.2 32 99-131 2-33 (34)
122 COG5010 TadD Flp pilus assembl 97.8 0.00082 1.8E-08 61.3 15.1 163 59-228 60-229 (257)
123 COG5010 TadD Flp pilus assembl 97.8 0.0031 6.8E-08 57.6 18.6 154 308-467 70-225 (257)
124 PLN02789 farnesyltranstransfer 97.8 0.0038 8.3E-08 61.2 20.8 182 282-470 80-299 (320)
125 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00052 1.1E-08 68.6 14.7 125 172-300 171-295 (395)
126 PRK15179 Vi polysaccharide bio 97.8 0.001 2.2E-08 72.0 17.9 159 303-474 85-246 (694)
127 PRK14720 transcript cleavage f 97.8 0.0018 3.9E-08 70.9 19.4 228 51-315 16-268 (906)
128 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0007 1.5E-08 67.7 15.0 127 275-406 171-298 (395)
129 KOG1914 mRNA cleavage and poly 97.7 0.066 1.4E-06 54.1 34.8 394 63-470 17-536 (656)
130 PLN02789 farnesyltranstransfer 97.7 0.024 5.1E-07 55.7 24.7 176 101-285 40-229 (320)
131 KOG1125 TPR repeat-containing 97.7 0.0015 3.3E-08 65.9 16.4 245 210-464 294-562 (579)
132 COG4783 Putative Zn-dependent 97.7 0.025 5.4E-07 56.5 23.9 114 211-329 316-433 (484)
133 PRK15363 pathogenicity island 97.7 0.00075 1.6E-08 57.3 11.2 95 376-472 35-131 (157)
134 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 45.7 3.0 29 306-335 2-30 (31)
135 PRK14720 transcript cleavage f 97.7 0.015 3.2E-07 64.1 23.9 166 134-330 30-195 (906)
136 PF09976 TPR_21: Tetratricopep 97.7 0.0023 5.1E-08 55.1 14.7 123 100-227 14-144 (145)
137 PF01535 PPR: PPR repeat; Int 97.6 6.7E-05 1.5E-09 45.0 3.4 30 99-129 1-30 (31)
138 TIGR02552 LcrH_SycD type III s 97.6 0.0012 2.5E-08 56.2 12.1 95 376-472 17-113 (135)
139 KOG0548 Molecular co-chaperone 97.6 0.094 2E-06 53.0 26.4 105 347-455 365-471 (539)
140 KOG1127 TPR repeat-containing 97.6 0.028 6E-07 60.8 23.2 342 113-472 472-878 (1238)
141 PRK15179 Vi polysaccharide bio 97.5 0.016 3.4E-07 63.0 22.1 127 200-330 85-214 (694)
142 KOG2053 Mitochondrial inherita 97.5 0.24 5.1E-06 53.4 37.1 386 69-479 42-508 (932)
143 KOG3081 Vesicle coat complex C 97.5 0.088 1.9E-06 48.5 23.2 154 280-441 115-274 (299)
144 KOG3081 Vesicle coat complex C 97.5 0.044 9.5E-07 50.4 20.1 110 280-393 144-258 (299)
145 KOG1914 mRNA cleavage and poly 97.4 0.17 3.7E-06 51.3 32.2 128 97-230 19-166 (656)
146 PF05843 Suf: Suppressor of fo 97.4 0.0041 8.9E-08 60.1 14.5 132 305-441 2-139 (280)
147 TIGR02552 LcrH_SycD type III s 97.4 0.0041 8.9E-08 52.8 13.0 99 137-237 19-120 (135)
148 KOG3060 Uncharacterized conser 97.4 0.061 1.3E-06 49.1 20.1 165 275-446 54-227 (289)
149 KOG1538 Uncharacterized conser 97.4 0.04 8.7E-07 56.6 20.5 238 99-408 557-806 (1081)
150 PF09976 TPR_21: Tetratricopep 97.3 0.0079 1.7E-07 51.8 13.6 47 420-468 96-142 (145)
151 cd00189 TPR Tetratricopeptide 97.3 0.0029 6.3E-08 49.2 10.2 92 379-472 3-96 (100)
152 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.008 1.7E-07 49.5 12.7 96 345-441 7-108 (119)
153 PF08579 RPM2: Mitochondrial r 97.2 0.0036 7.8E-08 49.3 8.8 81 101-182 28-116 (120)
154 PF12895 Apc3: Anaphase-promot 97.1 0.00077 1.7E-08 51.8 5.0 52 414-468 31-82 (84)
155 PF06239 ECSIT: Evolutionarily 97.1 0.0052 1.1E-07 54.8 10.2 98 292-391 33-153 (228)
156 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0084 1.8E-07 49.4 11.3 97 377-474 3-106 (119)
157 PF08579 RPM2: Mitochondrial r 97.1 0.0093 2E-07 47.1 10.1 81 306-388 27-116 (120)
158 PF12895 Apc3: Anaphase-promot 97.1 0.002 4.3E-08 49.5 6.5 79 317-400 2-82 (84)
159 KOG2796 Uncharacterized conser 97.0 0.037 7.9E-07 50.6 14.7 181 50-240 125-324 (366)
160 PF10037 MRP-S27: Mitochondria 97.0 0.016 3.4E-07 58.5 13.5 77 102-180 107-183 (429)
161 KOG3060 Uncharacterized conser 96.9 0.098 2.1E-06 47.8 16.6 179 287-472 26-219 (289)
162 cd00189 TPR Tetratricopeptide 96.9 0.013 2.9E-07 45.3 10.4 90 307-401 3-93 (100)
163 PF13414 TPR_11: TPR repeat; P 96.9 0.0044 9.6E-08 45.4 6.8 64 407-472 2-66 (69)
164 PRK02603 photosystem I assembl 96.8 0.017 3.6E-07 51.5 11.6 81 377-459 36-121 (172)
165 PRK02603 photosystem I assembl 96.8 0.052 1.1E-06 48.3 14.4 131 303-459 34-166 (172)
166 PF05843 Suf: Suppressor of fo 96.8 0.02 4.4E-07 55.3 12.5 128 99-230 2-136 (280)
167 PF10037 MRP-S27: Mitochondria 96.8 0.02 4.3E-07 57.8 12.6 115 134-248 65-186 (429)
168 PF04840 Vps16_C: Vps16, C-ter 96.8 0.62 1.3E-05 45.7 31.5 123 275-418 179-301 (319)
169 PLN03088 SGT1, suppressor of 96.7 0.012 2.6E-07 59.1 10.4 103 347-453 9-113 (356)
170 CHL00033 ycf3 photosystem I as 96.7 0.022 4.7E-07 50.5 11.0 94 375-470 34-139 (168)
171 PF14938 SNAP: Soluble NSF att 96.7 0.41 8.8E-06 46.5 20.6 184 185-441 30-228 (282)
172 PF13432 TPR_16: Tetratricopep 96.6 0.0058 1.3E-07 44.1 5.8 52 420-472 8-59 (65)
173 PF14559 TPR_19: Tetratricopep 96.6 0.004 8.7E-08 45.4 4.9 53 420-473 2-54 (68)
174 PLN03088 SGT1, suppressor of 96.6 0.037 8.1E-07 55.6 13.1 103 311-418 9-113 (356)
175 PF14938 SNAP: Soluble NSF att 96.6 0.8 1.7E-05 44.4 21.9 102 306-409 157-269 (282)
176 PRK10153 DNA-binding transcrip 96.5 0.15 3.2E-06 53.8 17.2 62 408-472 420-481 (517)
177 PF06239 ECSIT: Evolutionarily 96.4 0.019 4.1E-07 51.4 8.6 89 96-185 45-153 (228)
178 KOG2041 WD40 repeat protein [G 96.4 0.9 2E-05 47.7 21.3 187 183-402 747-949 (1189)
179 CHL00033 ycf3 photosystem I as 96.4 0.075 1.6E-06 47.0 12.4 80 99-181 36-117 (168)
180 KOG2280 Vacuolar assembly/sort 96.4 1.8 4E-05 46.0 28.3 112 273-401 684-795 (829)
181 PF14559 TPR_19: Tetratricopep 96.3 0.018 3.9E-07 41.9 7.0 62 352-415 3-65 (68)
182 KOG2280 Vacuolar assembly/sort 96.3 1.9 4E-05 45.9 23.3 126 325-468 669-794 (829)
183 PF12921 ATP13: Mitochondrial 96.3 0.066 1.4E-06 44.4 10.7 53 333-385 45-97 (126)
184 PF04840 Vps16_C: Vps16, C-ter 96.3 1.3 2.8E-05 43.6 26.7 108 341-467 178-285 (319)
185 PF13281 DUF4071: Domain of un 96.2 0.41 9E-06 47.5 17.6 72 278-350 146-227 (374)
186 COG3898 Uncharacterized membra 96.2 1.4 3E-05 43.2 25.3 303 81-402 67-389 (531)
187 PRK15363 pathogenicity island 96.2 0.17 3.7E-06 43.3 12.7 28 271-298 101-128 (157)
188 PF13432 TPR_16: Tetratricopep 96.2 0.029 6.4E-07 40.3 7.3 59 382-441 3-63 (65)
189 KOG0553 TPR repeat-containing 96.1 0.02 4.4E-07 53.5 7.3 105 349-458 90-197 (304)
190 PF13371 TPR_9: Tetratricopept 96.0 0.022 4.7E-07 42.2 6.2 55 417-473 4-58 (73)
191 PRK10866 outer membrane biogen 96.0 0.54 1.2E-05 44.3 16.8 175 69-260 34-237 (243)
192 PF12921 ATP13: Mitochondrial 96.0 0.086 1.9E-06 43.7 9.9 79 340-418 2-98 (126)
193 PF12688 TPR_5: Tetratrico pep 95.9 0.15 3.2E-06 41.8 10.7 104 107-212 10-117 (120)
194 KOG0553 TPR repeat-containing 95.8 0.12 2.7E-06 48.5 10.9 100 313-418 90-192 (304)
195 PF12688 TPR_5: Tetratrico pep 95.7 0.28 6.1E-06 40.2 11.6 90 311-401 8-100 (120)
196 PRK10153 DNA-binding transcrip 95.7 0.67 1.5E-05 48.9 17.4 142 93-238 332-489 (517)
197 PF13414 TPR_11: TPR repeat; P 95.6 0.052 1.1E-06 39.6 6.6 64 376-440 3-69 (69)
198 COG5107 RNA14 Pre-mRNA 3'-end 95.6 2.8 6.1E-05 41.9 30.0 91 50-149 29-123 (660)
199 PRK15331 chaperone protein Sic 95.5 0.087 1.9E-06 45.2 8.4 89 382-472 43-133 (165)
200 COG4235 Cytochrome c biogenesi 95.5 0.37 8E-06 45.6 13.1 102 373-475 153-258 (287)
201 PF03704 BTAD: Bacterial trans 95.5 0.38 8.3E-06 41.3 12.5 55 276-330 65-122 (146)
202 PF09205 DUF1955: Domain of un 95.4 0.67 1.5E-05 37.9 12.4 140 315-476 13-152 (161)
203 KOG1538 Uncharacterized conser 95.4 0.75 1.6E-05 47.8 15.6 176 100-301 600-801 (1081)
204 PRK10803 tol-pal system protei 95.4 0.14 3E-06 48.7 10.2 56 414-471 186-244 (263)
205 KOG1920 IkappaB kinase complex 95.3 5.9 0.00013 44.7 23.1 97 276-403 955-1053(1265)
206 smart00299 CLH Clathrin heavy 95.3 1.6 3.4E-05 37.1 15.7 87 137-227 9-95 (140)
207 PF13431 TPR_17: Tetratricopep 95.2 0.019 4.1E-07 35.0 2.4 32 432-464 2-33 (34)
208 COG4235 Cytochrome c biogenesi 95.1 0.34 7.3E-06 45.9 11.6 112 303-416 155-268 (287)
209 KOG3941 Intermediate in Toll s 95.1 0.21 4.5E-06 46.4 9.9 110 291-402 52-185 (406)
210 KOG1130 Predicted G-alpha GTPa 95.0 1 2.2E-05 44.3 14.7 129 341-470 196-341 (639)
211 COG4700 Uncharacterized protei 94.9 2.4 5.2E-05 37.1 16.3 130 336-472 85-221 (251)
212 PRK10803 tol-pal system protei 94.9 0.49 1.1E-05 45.0 12.3 98 343-441 146-249 (263)
213 KOG0550 Molecular chaperone (D 94.8 1.1 2.4E-05 44.2 14.2 152 313-473 178-350 (486)
214 PF13371 TPR_9: Tetratricopept 94.8 0.12 2.7E-06 38.0 6.6 57 384-441 3-61 (73)
215 COG4700 Uncharacterized protei 94.7 2.7 5.8E-05 36.9 15.0 96 133-228 87-187 (251)
216 KOG2796 Uncharacterized conser 94.7 3.6 7.8E-05 38.2 17.1 227 203-442 71-319 (366)
217 PRK10866 outer membrane biogen 94.7 3.9 8.4E-05 38.5 21.0 51 349-399 184-235 (243)
218 PF03704 BTAD: Bacterial trans 94.6 0.18 3.9E-06 43.3 8.2 68 410-479 64-136 (146)
219 PF13525 YfiO: Outer membrane 94.4 3.9 8.5E-05 37.4 18.6 84 307-395 113-197 (203)
220 PF13424 TPR_12: Tetratricopep 94.2 0.12 2.5E-06 38.8 5.2 19 381-399 10-28 (78)
221 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 0.27 5.9E-06 49.5 8.7 97 375-476 74-177 (453)
222 COG3898 Uncharacterized membra 93.9 7.1 0.00015 38.5 27.5 208 247-472 166-391 (531)
223 PF13428 TPR_14: Tetratricopep 93.9 0.16 3.5E-06 33.1 4.8 40 410-451 3-42 (44)
224 PF13525 YfiO: Outer membrane 93.8 5.3 0.00011 36.5 17.2 50 310-359 147-197 (203)
225 PF04053 Coatomer_WDAD: Coatom 93.7 2.4 5.3E-05 43.7 15.2 105 280-403 325-429 (443)
226 PF07035 Mic1: Colon cancer-as 93.5 2.3 5.1E-05 37.0 12.5 135 18-165 14-150 (167)
227 PF13424 TPR_12: Tetratricopep 93.3 0.21 4.5E-06 37.4 5.3 62 409-471 6-73 (78)
228 KOG2066 Vacuolar assembly/sort 92.9 16 0.00035 39.5 22.6 140 69-229 393-533 (846)
229 KOG2041 WD40 repeat protein [G 92.8 15 0.00033 39.1 25.3 150 81-258 748-901 (1189)
230 KOG1130 Predicted G-alpha GTPa 92.8 0.95 2.1E-05 44.5 9.9 258 107-367 26-342 (639)
231 KOG3941 Intermediate in Toll s 92.7 0.72 1.6E-05 43.0 8.5 102 83-185 50-173 (406)
232 COG1747 Uncharacterized N-term 92.6 5 0.00011 41.0 14.7 180 70-264 44-234 (711)
233 PLN03098 LPA1 LOW PSII ACCUMUL 92.5 1 2.2E-05 45.5 10.0 61 339-402 74-138 (453)
234 smart00299 CLH Clathrin heavy 92.2 6.4 0.00014 33.3 13.8 63 343-418 72-135 (140)
235 PF10300 DUF3808: Protein of u 92.0 18 0.00039 38.0 22.4 79 150-230 248-334 (468)
236 COG4105 ComL DNA uptake lipopr 92.0 9.8 0.00021 35.5 14.9 176 69-263 36-232 (254)
237 PF04053 Coatomer_WDAD: Coatom 91.9 8 0.00017 40.0 16.1 153 113-298 275-427 (443)
238 KOG2610 Uncharacterized conser 91.7 4.9 0.00011 38.7 12.8 154 213-367 115-274 (491)
239 PF13281 DUF4071: Domain of un 91.6 12 0.00025 37.5 16.1 67 77-145 150-227 (374)
240 PF07079 DUF1347: Protein of u 90.8 20 0.00044 36.3 33.9 384 69-470 47-521 (549)
241 PF10300 DUF3808: Protein of u 90.8 14 0.0003 38.8 16.8 157 310-472 194-375 (468)
242 KOG0543 FKBP-type peptidyl-pro 90.5 6.1 0.00013 39.2 12.8 138 311-473 215-355 (397)
243 COG1729 Uncharacterized protei 90.4 2.7 6E-05 39.3 9.9 95 100-196 144-241 (262)
244 COG3118 Thioredoxin domain-con 90.4 17 0.00036 34.7 15.5 55 144-199 143-197 (304)
245 KOG2053 Mitochondrial inherita 90.4 32 0.0007 37.9 36.8 212 8-230 22-255 (932)
246 PF09613 HrpB1_HrpK: Bacterial 89.7 6.6 0.00014 33.8 10.9 92 349-444 19-112 (160)
247 PF13512 TPR_18: Tetratricopep 89.6 8.9 0.00019 32.3 11.4 52 351-402 21-73 (142)
248 COG5107 RNA14 Pre-mRNA 3'-end 89.5 26 0.00056 35.5 29.6 129 341-472 398-530 (660)
249 PF13170 DUF4003: Protein of u 88.9 6.1 0.00013 38.4 11.6 138 33-176 60-223 (297)
250 PRK15331 chaperone protein Sic 88.9 2.7 5.8E-05 36.3 8.0 91 70-163 40-133 (165)
251 PF09205 DUF1955: Domain of un 88.7 13 0.00027 30.8 12.5 61 204-264 89-149 (161)
252 KOG1258 mRNA processing protei 88.5 36 0.00078 35.8 27.8 181 272-459 296-490 (577)
253 PF13512 TPR_18: Tetratricopep 88.3 14 0.00031 31.1 12.6 75 312-388 18-94 (142)
254 TIGR02561 HrpB1_HrpK type III 88.3 11 0.00025 31.8 11.1 89 352-444 22-112 (153)
255 KOG0543 FKBP-type peptidyl-pro 87.9 4.8 0.0001 39.9 10.0 87 178-264 216-320 (397)
256 COG3629 DnrI DNA-binding trans 87.7 3.6 7.8E-05 39.2 8.9 74 275-349 155-236 (280)
257 COG4105 ComL DNA uptake lipopr 87.7 24 0.00053 33.0 18.5 57 415-472 173-232 (254)
258 PF09613 HrpB1_HrpK: Bacterial 86.8 10 0.00023 32.6 10.2 115 69-191 8-130 (160)
259 COG3629 DnrI DNA-binding trans 86.7 3.6 7.7E-05 39.2 8.2 57 413-471 158-214 (280)
260 KOG2610 Uncharacterized conser 86.5 8.3 0.00018 37.2 10.3 158 316-478 115-281 (491)
261 KOG1941 Acetylcholine receptor 86.4 10 0.00023 37.0 11.0 194 275-469 45-271 (518)
262 KOG4570 Uncharacterized conser 85.9 6.1 0.00013 37.7 9.1 97 268-369 59-164 (418)
263 PF00637 Clathrin: Region in C 85.9 0.45 9.7E-06 40.7 1.8 86 140-228 12-97 (143)
264 KOG4555 TPR repeat-containing 85.9 10 0.00022 31.3 9.1 89 385-475 52-146 (175)
265 COG4649 Uncharacterized protei 85.9 11 0.00023 32.8 9.7 22 278-299 172-193 (221)
266 PF13176 TPR_7: Tetratricopept 85.8 1.4 3.1E-05 27.0 3.6 26 446-471 1-26 (36)
267 KOG0550 Molecular chaperone (D 85.8 41 0.00089 33.7 20.2 147 246-402 180-347 (486)
268 PF13176 TPR_7: Tetratricopept 85.8 1.5 3.3E-05 26.9 3.7 26 203-228 1-26 (36)
269 PRK11906 transcriptional regul 85.8 45 0.00098 34.2 16.1 143 319-468 273-431 (458)
270 COG1729 Uncharacterized protei 85.1 22 0.00047 33.5 12.3 97 343-441 145-247 (262)
271 KOG2114 Vacuolar assembly/sort 85.1 46 0.00099 36.6 15.9 142 279-435 374-516 (933)
272 PF00515 TPR_1: Tetratricopept 85.0 3 6.5E-05 24.9 4.8 31 410-441 3-33 (34)
273 PF10602 RPN7: 26S proteasome 85.0 27 0.00059 31.0 12.7 56 275-330 38-99 (177)
274 KOG4555 TPR repeat-containing 84.6 8.9 0.00019 31.6 8.2 51 179-229 52-105 (175)
275 PRK11906 transcriptional regul 84.3 23 0.00051 36.2 13.0 116 355-472 273-400 (458)
276 PF02259 FAT: FAT domain; Int 83.8 49 0.0011 33.0 22.1 67 301-368 143-212 (352)
277 PF07035 Mic1: Colon cancer-as 83.7 29 0.00063 30.3 15.2 41 156-196 15-55 (167)
278 PF13428 TPR_14: Tetratricopep 82.8 4 8.7E-05 26.3 4.9 28 203-230 3-30 (44)
279 PF07719 TPR_2: Tetratricopept 82.6 4.5 9.8E-05 24.0 4.9 30 411-441 4-33 (34)
280 PF10602 RPN7: 26S proteasome 82.5 8.1 0.00018 34.3 8.3 58 172-229 38-101 (177)
281 PF02284 COX5A: Cytochrome c o 82.2 14 0.0003 29.0 8.1 61 321-384 27-87 (108)
282 PRK09687 putative lyase; Provi 80.9 55 0.0012 31.6 26.9 74 271-350 204-277 (280)
283 cd00923 Cyt_c_Oxidase_Va Cytoc 80.6 10 0.00022 29.4 6.8 59 117-177 25-83 (103)
284 PF02259 FAT: FAT domain; Int 80.5 65 0.0014 32.1 15.5 67 406-473 144-213 (352)
285 KOG1258 mRNA processing protei 80.5 83 0.0018 33.3 26.2 119 340-464 297-420 (577)
286 PF04184 ST7: ST7 protein; In 79.9 80 0.0017 32.7 17.8 96 345-441 264-378 (539)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 79.6 14 0.0003 28.6 7.2 63 319-384 22-84 (103)
288 COG1747 Uncharacterized N-term 79.5 82 0.0018 32.7 20.4 93 273-368 132-233 (711)
289 KOG1464 COP9 signalosome, subu 79.1 57 0.0012 30.7 15.5 242 184-433 41-327 (440)
290 PF00637 Clathrin: Region in C 79.0 2.4 5.2E-05 36.1 3.6 51 105-157 14-64 (143)
291 COG3118 Thioredoxin domain-con 78.9 63 0.0014 31.0 17.6 136 246-390 145-286 (304)
292 KOG4570 Uncharacterized conser 78.8 9.6 0.00021 36.5 7.5 93 69-165 65-165 (418)
293 PF13170 DUF4003: Protein of u 78.5 69 0.0015 31.2 15.7 129 320-451 78-224 (297)
294 PF11207 DUF2989: Protein of u 78.3 15 0.00032 33.0 8.3 44 250-293 155-198 (203)
295 COG0457 NrfG FOG: TPR repeat [ 77.5 54 0.0012 29.5 27.0 195 273-472 59-264 (291)
296 PF04097 Nic96: Nup93/Nic96; 77.1 38 0.00083 37.0 12.9 38 5-46 121-158 (613)
297 PF13431 TPR_17: Tetratricopep 77.0 4.6 9.9E-05 24.4 3.4 22 169-190 12-33 (34)
298 PF13929 mRNA_stabil: mRNA sta 76.7 48 0.001 31.7 11.5 121 101-226 134-263 (292)
299 TIGR02561 HrpB1_HrpK type III 76.0 28 0.00062 29.6 8.8 73 69-148 8-89 (153)
300 PF02284 COX5A: Cytochrome c o 75.5 12 0.00027 29.2 6.1 46 117-163 28-73 (108)
301 KOG1586 Protein required for f 75.0 53 0.0012 30.3 10.8 13 318-330 168-180 (288)
302 KOG0276 Vesicle coat complex C 74.6 40 0.00087 35.5 11.1 101 179-298 646-746 (794)
303 PF13374 TPR_10: Tetratricopep 74.3 5.6 0.00012 24.9 3.6 28 445-472 3-30 (42)
304 PF00515 TPR_1: Tetratricopept 74.0 7.5 0.00016 23.1 3.9 29 100-129 3-31 (34)
305 KOG0276 Vesicle coat complex C 73.4 55 0.0012 34.6 11.8 149 285-469 598-746 (794)
306 KOG4234 TPR repeat-containing 73.3 14 0.00031 32.9 6.7 86 386-473 105-197 (271)
307 KOG1585 Protein required for f 72.6 83 0.0018 29.3 16.1 195 105-327 38-250 (308)
308 PF13374 TPR_10: Tetratricopep 71.8 7.2 0.00016 24.3 3.7 28 202-229 3-30 (42)
309 PF13929 mRNA_stabil: mRNA sta 71.8 97 0.0021 29.7 22.4 115 317-433 141-262 (292)
310 KOG0890 Protein kinase of the 70.6 2.9E+02 0.0064 34.8 23.4 310 141-475 1389-1733(2382)
311 PF08631 SPO22: Meiosis protei 70.4 1.1E+02 0.0023 29.6 23.5 15 421-435 258-272 (278)
312 PF11207 DUF2989: Protein of u 70.4 28 0.00061 31.3 8.0 68 152-220 123-197 (203)
313 PF07721 TPR_4: Tetratricopept 70.3 9.1 0.0002 21.3 3.4 21 174-194 5-25 (26)
314 PRK09687 putative lyase; Provi 69.7 1.1E+02 0.0024 29.5 26.7 80 272-355 141-221 (280)
315 PF13762 MNE1: Mitochondrial s 69.5 36 0.00079 28.9 8.1 78 69-148 40-128 (145)
316 PF13181 TPR_8: Tetratricopept 68.5 14 0.0003 21.8 4.2 29 411-440 4-32 (34)
317 KOG2066 Vacuolar assembly/sort 68.3 1.9E+02 0.0042 31.8 22.8 31 275-305 507-537 (846)
318 KOG1585 Protein required for f 68.1 1.1E+02 0.0023 28.7 19.3 144 274-432 92-250 (308)
319 KOG0687 26S proteasome regulat 68.0 1.2E+02 0.0027 29.5 12.8 91 377-469 105-206 (393)
320 COG4785 NlpI Lipoprotein NlpI, 67.5 1E+02 0.0022 28.2 13.1 162 304-475 99-268 (297)
321 KOG2114 Vacuolar assembly/sort 65.4 2.3E+02 0.0049 31.6 24.4 134 81-227 382-516 (933)
322 PRK15180 Vi polysaccharide bio 64.6 28 0.0006 35.5 7.5 118 317-441 302-423 (831)
323 COG4649 Uncharacterized protei 64.5 1E+02 0.0022 27.2 12.8 130 96-230 57-196 (221)
324 KOG0403 Neoplastic transformat 64.1 1.8E+02 0.0038 29.8 19.5 61 380-441 513-575 (645)
325 PRK15180 Vi polysaccharide bio 63.8 1.2E+02 0.0025 31.3 11.5 127 351-481 300-428 (831)
326 PF07719 TPR_2: Tetratricopept 63.7 16 0.00036 21.4 3.9 29 100-129 3-31 (34)
327 PF13181 TPR_8: Tetratricopept 62.7 16 0.00035 21.5 3.7 28 445-472 2-29 (34)
328 PF08631 SPO22: Meiosis protei 62.4 1.5E+02 0.0033 28.5 24.6 63 305-369 85-150 (278)
329 KOG2297 Predicted translation 62.3 1.5E+02 0.0033 28.6 11.9 173 164-362 160-343 (412)
330 PF14853 Fis1_TPR_C: Fis1 C-te 61.4 37 0.0008 23.1 5.5 48 449-522 6-53 (53)
331 PF10345 Cohesin_load: Cohesin 59.8 2.7E+02 0.0058 30.5 30.9 49 315-364 372-428 (608)
332 PF04097 Nic96: Nup93/Nic96; 58.9 2.8E+02 0.006 30.4 19.2 56 175-230 116-181 (613)
333 KOG1941 Acetylcholine receptor 58.3 2E+02 0.0043 28.6 21.3 165 203-367 85-273 (518)
334 PF13934 ELYS: Nuclear pore co 58.2 1.6E+02 0.0034 27.4 12.9 69 346-418 114-182 (226)
335 COG4455 ImpE Protein of avirul 57.8 59 0.0013 29.7 7.6 57 307-366 4-61 (273)
336 PF13174 TPR_6: Tetratricopept 56.6 27 0.00058 20.2 4.0 22 420-441 11-32 (33)
337 KOG2300 Uncharacterized conser 56.0 2.6E+02 0.0055 29.1 17.9 118 113-230 337-474 (629)
338 TIGR02508 type_III_yscG type I 55.9 99 0.0021 24.3 8.7 85 151-238 21-105 (115)
339 PF11846 DUF3366: Domain of un 55.8 49 0.0011 29.8 7.3 28 374-401 142-169 (193)
340 KOG3364 Membrane protein invol 55.6 82 0.0018 26.4 7.5 49 423-472 49-99 (149)
341 PF04184 ST7: ST7 protein; In 55.5 2.7E+02 0.0058 29.1 17.5 58 309-366 264-321 (539)
342 TIGR03504 FimV_Cterm FimV C-te 55.2 19 0.00041 23.4 3.1 26 449-474 4-29 (44)
343 PF13762 MNE1: Mitochondrial s 53.7 1.4E+02 0.003 25.4 8.9 49 339-388 78-127 (145)
344 KOG4648 Uncharacterized conser 52.0 41 0.00089 32.8 6.1 49 107-159 106-155 (536)
345 PF11663 Toxin_YhaV: Toxin wit 52.0 20 0.00042 29.8 3.4 30 113-145 109-138 (140)
346 KOG0991 Replication factor C, 50.8 2.1E+02 0.0046 26.6 14.4 148 279-455 136-283 (333)
347 PF10579 Rapsyn_N: Rapsyn N-te 50.5 43 0.00094 24.9 4.7 19 342-360 45-63 (80)
348 COG4455 ImpE Protein of avirul 50.5 96 0.0021 28.4 7.7 70 241-314 7-82 (273)
349 KOG4648 Uncharacterized conser 50.2 40 0.00086 32.8 5.7 108 348-464 105-215 (536)
350 PF11768 DUF3312: Protein of u 49.8 1.2E+02 0.0026 31.9 9.4 57 174-230 412-473 (545)
351 PF07163 Pex26: Pex26 protein; 49.1 2.2E+02 0.0048 27.2 10.1 88 311-401 90-183 (309)
352 KOG4077 Cytochrome c oxidase, 49.1 1.1E+02 0.0025 25.2 7.2 71 322-404 67-137 (149)
353 TIGR02508 type_III_yscG type I 48.7 1.3E+02 0.0029 23.7 9.4 62 280-345 46-107 (115)
354 PF07079 DUF1347: Protein of u 48.6 3.3E+02 0.0071 28.1 31.2 246 155-413 245-530 (549)
355 smart00386 HAT HAT (Half-A-TPR 47.8 45 0.00098 19.0 4.0 29 423-452 1-29 (33)
356 PF10366 Vps39_1: Vacuolar sor 47.7 1.5E+02 0.0031 23.8 8.4 25 306-330 41-65 (108)
357 PF08311 Mad3_BUB1_I: Mad3/BUB 47.7 1.5E+02 0.0032 24.5 8.2 43 117-159 81-123 (126)
358 PF10475 DUF2450: Protein of u 47.6 1.1E+02 0.0024 29.7 8.7 54 175-230 103-156 (291)
359 COG3947 Response regulator con 47.5 68 0.0015 30.7 6.6 58 412-471 283-340 (361)
360 COG0457 NrfG FOG: TPR repeat [ 47.2 2E+02 0.0044 25.4 25.8 123 313-441 139-268 (291)
361 PRK13800 putative oxidoreducta 45.5 5.4E+02 0.012 29.8 26.2 256 133-415 633-891 (897)
362 TIGR03504 FimV_Cterm FimV C-te 44.8 60 0.0013 21.1 4.2 19 312-330 7-25 (44)
363 PF10579 Rapsyn_N: Rapsyn N-te 44.8 73 0.0016 23.8 5.1 47 352-398 18-65 (80)
364 PF11768 DUF3312: Protein of u 43.9 3.1E+02 0.0067 29.1 11.3 22 309-330 413-434 (545)
365 cd08819 CARD_MDA5_2 Caspase ac 43.7 1.5E+02 0.0032 22.7 6.9 64 155-220 22-85 (88)
366 COG5159 RPN6 26S proteasome re 43.3 2.8E+02 0.006 26.7 9.8 123 106-230 11-154 (421)
367 COG5108 RPO41 Mitochondrial DN 43.2 1.2E+02 0.0026 32.5 8.3 73 140-212 33-114 (1117)
368 smart00028 TPR Tetratricopepti 42.9 51 0.0011 17.9 3.8 18 420-437 12-29 (34)
369 PF07163 Pex26: Pex26 protein; 42.7 2.3E+02 0.0051 27.1 9.3 85 207-296 89-181 (309)
370 COG5108 RPO41 Mitochondrial DN 42.2 1.5E+02 0.0032 32.0 8.7 22 309-330 33-54 (1117)
371 KOG1464 COP9 signalosome, subu 42.1 3.1E+02 0.0067 26.0 16.0 179 64-246 24-237 (440)
372 PRK10564 maltose regulon perip 41.7 50 0.0011 31.8 5.0 44 303-347 255-299 (303)
373 KOG4077 Cytochrome c oxidase, 40.8 1.3E+02 0.0029 24.8 6.4 45 118-163 68-112 (149)
374 KOG0890 Protein kinase of the 40.4 9.1E+02 0.02 30.9 28.4 123 74-207 1426-1552(2382)
375 PRK10941 hypothetical protein; 40.1 1.6E+02 0.0034 28.2 8.2 60 411-472 184-243 (269)
376 KOG4279 Serine/threonine prote 40.1 2.4E+02 0.0052 31.0 9.9 153 275-441 203-398 (1226)
377 cd08819 CARD_MDA5_2 Caspase ac 39.7 1.5E+02 0.0032 22.7 6.2 63 50-118 22-85 (88)
378 PF10366 Vps39_1: Vacuolar sor 39.6 2E+02 0.0043 23.1 8.3 27 203-229 41-67 (108)
379 PF06552 TOM20_plant: Plant sp 38.7 2.8E+02 0.0062 24.6 8.9 45 425-477 96-140 (186)
380 KOG1920 IkappaB kinase complex 38.4 7.2E+02 0.016 29.2 24.1 120 275-406 910-1029(1265)
381 COG5187 RPN7 26S proteasome re 38.3 3.7E+02 0.0081 25.9 10.7 133 336-470 77-218 (412)
382 PF04190 DUF410: Protein of un 37.4 3.7E+02 0.0081 25.6 19.5 82 272-369 89-170 (260)
383 PRK11619 lytic murein transgly 37.3 6.1E+02 0.013 28.0 41.6 401 50-479 83-511 (644)
384 KOG3807 Predicted membrane pro 36.8 2.2E+02 0.0047 27.9 8.3 54 311-364 282-335 (556)
385 PF11848 DUF3368: Domain of un 36.8 1E+02 0.0022 20.4 4.6 31 147-177 14-44 (48)
386 KOG2300 Uncharacterized conser 36.5 5.2E+02 0.011 27.0 27.7 372 82-467 69-508 (629)
387 PF11846 DUF3366: Domain of un 36.4 1.4E+02 0.003 26.8 7.0 38 403-441 139-176 (193)
388 PF07575 Nucleopor_Nup85: Nup8 35.8 4.1E+02 0.0088 28.8 11.6 93 200-299 371-464 (566)
389 COG3947 Response regulator con 35.6 4.2E+02 0.0091 25.7 15.6 54 277-330 283-339 (361)
390 COG2976 Uncharacterized protei 35.3 3.4E+02 0.0074 24.5 12.3 23 450-472 165-187 (207)
391 PF11838 ERAP1_C: ERAP1-like C 35.2 4.4E+02 0.0094 25.8 17.6 80 151-230 146-230 (324)
392 PF09477 Type_III_YscG: Bacter 35.1 2.4E+02 0.0051 22.6 9.1 78 150-230 21-98 (116)
393 PF14689 SPOB_a: Sensor_kinase 33.6 50 0.0011 23.3 2.8 22 309-330 28-49 (62)
394 PF14853 Fis1_TPR_C: Fis1 C-te 33.3 1E+02 0.0023 20.9 4.2 28 416-445 9-36 (53)
395 PF14561 TPR_20: Tetratricopep 33.3 1.2E+02 0.0027 23.2 5.2 43 430-473 9-51 (90)
396 PF11838 ERAP1_C: ERAP1-like C 32.9 4.8E+02 0.01 25.5 21.3 177 289-468 56-261 (324)
397 PF13934 ELYS: Nuclear pore co 32.6 4.1E+02 0.0089 24.7 11.5 129 268-409 74-205 (226)
398 KOG2659 LisH motif-containing 32.6 4.1E+02 0.0088 24.6 9.1 15 387-401 114-128 (228)
399 PF10155 DUF2363: Uncharacteri 31.6 3E+02 0.0065 22.8 10.0 110 83-196 5-124 (126)
400 PF14689 SPOB_a: Sensor_kinase 31.5 58 0.0013 23.0 2.9 26 204-229 26-51 (62)
401 PF11525 CopK: Copper resistan 31.4 19 0.00042 25.6 0.4 21 590-610 8-28 (73)
402 cd08326 CARD_CASP9 Caspase act 30.6 2E+02 0.0044 21.8 5.9 62 155-220 19-80 (84)
403 PF04034 DUF367: Domain of unk 30.4 3.2E+02 0.0068 22.7 7.6 58 375-433 65-123 (127)
404 KOG0292 Vesicle coat complex C 29.4 94 0.002 34.6 5.1 95 317-437 606-700 (1202)
405 PF12926 MOZART2: Mitotic-spin 29.2 2.6E+02 0.0057 21.3 6.7 41 156-196 29-69 (88)
406 PRK10564 maltose regulon perip 29.1 76 0.0016 30.6 4.0 30 101-131 260-289 (303)
407 KOG1550 Extracellular protein 28.8 7.7E+02 0.017 26.6 14.5 155 314-476 259-429 (552)
408 COG4785 NlpI Lipoprotein NlpI, 28.5 4.8E+02 0.01 24.1 15.1 155 99-264 100-266 (297)
409 KOG0686 COP9 signalosome, subu 27.8 6.7E+02 0.014 25.6 13.4 57 274-330 151-213 (466)
410 PF11848 DUF3368: Domain of un 27.7 1.9E+02 0.004 19.1 4.9 32 315-347 13-44 (48)
411 KOG4234 TPR repeat-containing 27.2 3.8E+02 0.0083 24.3 7.6 21 210-230 177-197 (271)
412 COG4259 Uncharacterized protei 26.9 2.1E+02 0.0046 22.4 5.2 44 426-469 54-97 (121)
413 PRK13800 putative oxidoreducta 26.7 1E+03 0.023 27.5 26.4 254 88-368 625-880 (897)
414 PF08967 DUF1884: Domain of un 26.6 71 0.0015 23.8 2.6 29 502-530 6-34 (85)
415 PF10255 Paf67: RNA polymerase 26.3 4.3E+02 0.0092 27.1 8.9 104 122-228 62-191 (404)
416 TIGR02270 conserved hypothetic 26.3 7.3E+02 0.016 25.5 24.4 100 104-213 44-143 (410)
417 PRK13342 recombination factor 26.2 7.3E+02 0.016 25.5 13.4 35 203-237 229-267 (413)
418 KOG1498 26S proteasome regulat 25.5 7.2E+02 0.016 25.2 16.7 183 166-402 48-238 (439)
419 PF12862 Apc5: Anaphase-promot 24.4 2.5E+02 0.0053 21.6 5.6 53 420-472 9-69 (94)
420 PF02847 MA3: MA3 domain; Int 24.1 3E+02 0.0065 21.9 6.4 22 309-330 7-28 (113)
421 cd08326 CARD_CASP9 Caspase act 24.1 3.2E+02 0.007 20.7 6.1 41 283-323 40-80 (84)
422 KOG4567 GTPase-activating prot 24.1 6.9E+02 0.015 24.5 10.0 73 324-403 263-345 (370)
423 KOG4507 Uncharacterized conser 24.0 2.7E+02 0.0058 29.7 7.0 132 321-457 590-723 (886)
424 smart00638 LPD_N Lipoprotein N 24.0 9.4E+02 0.02 26.0 22.7 60 69-131 311-371 (574)
425 PRK11639 zinc uptake transcrip 23.9 3.5E+02 0.0075 23.7 7.1 37 149-185 39-75 (169)
426 PF09454 Vps23_core: Vps23 cor 23.8 1.7E+02 0.0037 20.9 4.1 52 406-459 6-57 (65)
427 PRK11619 lytic murein transgly 23.8 1E+03 0.022 26.3 32.5 322 69-436 35-373 (644)
428 PF14044 NETI: NETI protein 23.7 67 0.0015 22.0 1.9 15 511-525 11-25 (57)
429 PF09670 Cas_Cas02710: CRISPR- 23.7 7.8E+02 0.017 25.0 12.7 51 316-368 143-197 (379)
430 KOG3807 Predicted membrane pro 23.4 3.4E+02 0.0074 26.6 7.1 54 210-263 284-339 (556)
431 PF12862 Apc5: Anaphase-promot 23.2 3.5E+02 0.0076 20.8 7.1 21 209-229 49-69 (94)
432 PF06552 TOM20_plant: Plant sp 22.8 1.7E+02 0.0036 26.0 4.6 45 425-470 51-99 (186)
433 PF11123 DNA_Packaging_2: DNA 22.7 2E+02 0.0043 21.1 4.1 30 82-111 12-44 (82)
434 PF14863 Alkyl_sulf_dimr: Alky 22.6 4.8E+02 0.01 22.1 7.5 63 393-460 58-120 (141)
435 COG0735 Fur Fe2+/Zn2+ uptake r 22.4 3.9E+02 0.0084 22.7 6.9 46 140-185 25-70 (145)
436 COG0735 Fur Fe2+/Zn2+ uptake r 22.4 4.7E+02 0.01 22.2 7.4 45 86-131 8-52 (145)
437 PF09477 Type_III_YscG: Bacter 22.1 4.2E+02 0.0091 21.3 10.3 87 250-344 21-107 (116)
438 COG4003 Uncharacterized protei 22.1 87 0.0019 23.3 2.3 39 436-474 22-61 (98)
439 smart00777 Mad3_BUB1_I Mad3/BU 21.9 4E+02 0.0086 22.1 6.5 41 154-194 82-123 (125)
440 KOG4642 Chaperone-dependent E3 21.7 2.4E+02 0.0053 26.3 5.6 88 386-474 20-108 (284)
441 cd00280 TRFH Telomeric Repeat 21.5 5.9E+02 0.013 22.8 7.6 67 320-391 85-158 (200)
442 PF12926 MOZART2: Mitotic-spin 21.2 3.8E+02 0.0083 20.5 6.5 42 256-300 29-70 (88)
443 KOG1498 26S proteasome regulat 21.2 8.8E+02 0.019 24.6 14.7 101 380-485 135-253 (439)
444 KOG4334 Uncharacterized conser 21.1 1.4E+02 0.003 30.6 4.3 34 424-457 540-573 (650)
445 PF06957 COPI_C: Coatomer (COP 20.8 5.2E+02 0.011 26.7 8.3 43 399-442 289-333 (422)
446 COG2976 Uncharacterized protei 20.5 6.5E+02 0.014 22.8 12.8 125 99-230 55-188 (207)
447 PF08225 Antimicrobial19: Pseu 20.5 60 0.0013 17.0 0.9 11 576-586 11-21 (23)
448 KOG3364 Membrane protein invol 20.5 3.4E+02 0.0075 22.9 5.7 22 420-441 82-103 (149)
449 KOG2297 Predicted translation 20.2 8.2E+02 0.018 23.9 13.1 79 55-149 156-237 (412)
450 COG5159 RPN6 26S proteasome re 20.1 8E+02 0.017 23.7 13.6 46 313-359 12-64 (421)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-118 Score=973.48 Aligned_cols=599 Identities=32% Similarity=0.589 Sum_probs=586.9
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcC-CCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEG-SFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g-~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~ 76 (614)
+|.+|.+.|++.+ |+++|.+|...+ +.||..||++++++|++.+.. +++|..+.+.|+. +| + .++|.|+.
T Consensus 93 ~i~~l~~~g~~~~---Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~-~-~~~n~Li~ 166 (697)
T PLN03081 93 QIEKLVACGRHRE---ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PD-Q-YMMNRVLL 166 (697)
T ss_pred HHHHHHcCCCHHH---HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cc-h-HHHHHHHH
Confidence 4789999999986 789999998754 789999999999999988766 8999999999999 89 8 99999999
Q ss_pred HHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 77 FASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
+|.+ |+++.|.++|++|++||+++||++|.+|++. |++++|+++|++|.+.|.. ||..||+.++.+|+..|+.+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHH
Confidence 9999 9999999999999999999999999999999 9999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCC
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd 234 (614)
++|..+.+.|+.||..+||+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+. +.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 314 (614)
..||++++.+|++.|.++.|+++|..+.+. |+.||..++|+|+++|+|+|++++|.++|++|.+||+++||+||.+|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT---GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh---CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
+++|+.++|+++|++| ...|+.||..||++++.+|++.|.+++|.++|+.|.+++|+.|+..+|++||++|++.|++++
T Consensus 402 ~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 402 GNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHcCCHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999 999999999999999999999999999999999998878999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
|.+++++|+++|+..+|++|+.+| ..+|+++.|..+++++.+.+|. +..+|+.|+++|++.|+|++|.++++.|+++|
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~-~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTAC-RIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999 9999999999999999999888 88999999999999999999999999999999
Q ss_pred CccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHHHHHHH
Q 038206 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554 (614)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 554 (614)
+++.|+++|+++++.+|.|+.||..||+.+++++.++++..+|++.||.||+..++ +++++++++..+.+||||||++|
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~-~~~~~~~~~~~~~~hsekla~a~ 637 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELL-PDVDEDEEKVSGRYHSEKLAIAF 637 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhh-ccccHHHHHHHHHhccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhcCCCCCCcEEEEeccccccchhhHHHHhhhccCceEEEecCCccccccCCccCCCCCC
Q 038206 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614 (614)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~~~~w 614 (614)
|||.+|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 638 ~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 638 GLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred hCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-114 Score=967.23 Aligned_cols=595 Identities=35% Similarity=0.657 Sum_probs=582.8
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~ 77 (614)
||.+|+++|++++ |+++|.+|...|+.||.+||++++++|+..++. +++|..+.+.|+. +| . .+||+||.+
T Consensus 259 li~~~~~~g~~~e---Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d-~-~~~n~Li~~ 332 (857)
T PLN03077 259 MISGYFENGECLE---GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA-VD-V-SVCNSLIQM 332 (857)
T ss_pred HHHHHHhCCCHHH---HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cc-h-HHHHHHHHH
Confidence 6899999999997 789999999999999999999999999988876 9999999999999 89 8 999999999
Q ss_pred Hhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 78 ASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 78 ~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|.+ |++++|.++|++|..||+++||++|.+|++. |++++|+++|++|.+.|+. ||..||++++.+|++.|+++.|.+
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN-GLPDKALETYALMEQDNVS-PDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC-CCceeHHHHHHHHhccchHHHHHH
Confidence 999 9999999999999999999999999999999 9999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
+|+.+.+.|+.|+..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|...++||..
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~ 490 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV 490 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999866999999
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 316 (614)
||+++|.+|++.|.++.++++|..+.+. |+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|++
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~---g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRT---GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVA 566 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHh---CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038206 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (614)
+|+.++|+++|++| ...|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.
T Consensus 567 ~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 567 HGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred cCCHHHHHHHHHHH-HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999 89999999999999999999999999999999999877899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCc
Q 038206 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 397 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 476 (614)
+++++|+++||..+|++|+.+| ..+++.+.|+.+.+++.++.|+ +...|..|.++|++.|+|++|.++++.|+++|++
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHHHHHHHhh
Q 038206 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556 (614)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (614)
++|++||+++++.+|.|..||.+||+.+++++.++++..+|++.||.||+..++ ++ ++++|+..+++||||||++|||
T Consensus 724 k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~-~~~~k~~~~~~hse~la~a~~l 801 (857)
T PLN03077 724 VDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DE-IEVSKDDIFCGHSERLAIAFGL 801 (857)
T ss_pred CCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cc-cHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998876 44 7788999999999999999999
Q ss_pred cCCCCCCcEEEEeccccccchhhHHHHhhhccCceEEEecCCccccccCCccCCCC
Q 038206 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612 (614)
Q Consensus 557 ~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~~~ 612 (614)
|++|++.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 802 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 802 INTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-77 Score=667.20 Aligned_cols=575 Identities=24% Similarity=0.326 Sum_probs=514.7
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~ 77 (614)
||++|+++|++++ |+++|++|...|+.||.+||+++|++|+..+++ +++|..+++.|+. +| + .++|+||.+
T Consensus 158 li~~~~~~g~~~~---A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~-~~~n~Li~~ 231 (857)
T PLN03077 158 LVGGYAKAGYFDE---ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE-LD-V-DVVNALITM 231 (857)
T ss_pred HHHHHHhCCCHHH---HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC-cc-c-chHhHHHHH
Confidence 6899999999997 789999999999999999999999999988776 8999999999999 89 8 999999999
Q ss_pred Hhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 78 ASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 78 ~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|++ |++++|.++|++|+.||+++||++|.+|++. |++++|+++|++|.+.|+. ||..||+.++.+|+..|+++.|.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~-g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN-GECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHH
Confidence 999 9999999999999999999999999999999 9999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCCh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDG 235 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~ 235 (614)
+|..+.+.|+.||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+. +.||.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038206 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315 (614)
Q Consensus 236 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 315 (614)
.||++++.+|++.|+++.|.++|+.+.+. |+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~---g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERK---GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
++|+.++|+++|++| .. +++||..||+++|.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|++++|
T Consensus 467 ~~g~~~eA~~lf~~m-~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 467 LNNRCFEALIFFRQM-LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HCCCHHHHHHHHHHH-Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHH
Confidence 999999999999999 54 6999999999999999999999999999999987 69999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH-hCC
Q 038206 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT-DKG 474 (614)
Q Consensus 396 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g 474 (614)
.++|+++ .||..+|++||.+| .++|+.++|.++|++|.+.|..||..||+.++.+|++.|++++|.++|+.|. +.|
T Consensus 544 ~~~f~~~--~~d~~s~n~lI~~~-~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 544 WNQFNSH--EKDVVSWNILLTGY-VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHhc--CCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 9999998 79999999999999 9999999999999999999999999999999999999999999999999998 679
Q ss_pred CccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHHHH-HH
Q 038206 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA-IA 553 (614)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~ 553 (614)
+.|+..++... +......|+.+++.+ ++++| +++||...+- .-+..+...+.+. -.|..+ ..
T Consensus 621 i~P~~~~y~~l--------v~~l~r~G~~~eA~~----~~~~m---~~~pd~~~~~-aLl~ac~~~~~~e-~~e~~a~~l 683 (857)
T PLN03077 621 ITPNLKHYACV--------VDLLGRAGKLTEAYN----FINKM---PITPDPAVWG-ALLNACRIHRHVE-LGELAAQHI 683 (857)
T ss_pred CCCchHHHHHH--------HHHHHhCCCHHHHHH----HHHHC---CCCCCHHHHH-HHHHHHHHcCChH-HHHHHHHHH
Confidence 99988776543 333445678888866 55566 4789865432 2222222111111 012211 23
Q ss_pred HhhcCCCCCCcEEEEeccccccchhhHHHHhhhccCceEEE-------ecCCccccccCCccC
Q 038206 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV-------RDRARFHHFKDGSCS 609 (614)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~~ 609 (614)
+.+.+...+..+.+...|...|+.++|.++...|..+.+.- --.+..|-|..|--+
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 44555555555666677889999999999999997763221 112456777666443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-63 Score=548.83 Aligned_cols=438 Identities=17% Similarity=0.235 Sum_probs=409.9
Q ss_pred CChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCC----CCChhhHH
Q 038206 31 NNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIE----NPNSFTWN 102 (614)
Q Consensus 31 p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~----~~~~~~~~ 102 (614)
||..||+.+|++|++.++. .+++..|.+.|+. +| . .+||.||.+|++ |++++|.++|++|. .||.++||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~-pD-~-~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-AD-C-KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CC-H-HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8889999999999888876 8999999999999 89 8 999999999999 99999999999998 48999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH--hCCCCchhHHHHHHHHH
Q 038206 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK--RGLVSDVYINNSLIHFY 180 (614)
Q Consensus 103 ~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~ 180 (614)
++|.+|++. |++++|+++|++|.+.|+. ||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|
T Consensus 512 aLI~gy~k~-G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARA-GQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 999999999 9999999999999999999 9999999999999999999999999999987 67999999999999999
Q ss_pred HhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHH
Q 038206 181 ASCGHLDLANKVFDNMLE----RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255 (614)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~ 255 (614)
+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|... +.||..||++++.+|++.|+++.|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999954 56799999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038206 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLV 331 (614)
Q Consensus 256 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (614)
+++..+.+. |+.||..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|
T Consensus 670 ~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM- 745 (1060)
T PLN03218 670 EILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM- 745 (1060)
T ss_pred HHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 999999999 999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH----HcC-----------------
Q 038206 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA----RAG----------------- 390 (614)
Q Consensus 332 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g----------------- 390 (614)
...|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++|++++. +++
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~ 824 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIE 824 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Confidence 9999999999999999999999999999999999977 599999999999998743 332
Q ss_pred --CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHH
Q 038206 391 --NIDEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465 (614)
Q Consensus 391 --~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 465 (614)
..++|..+|++| ++.||..||+.+|.++ .+.+..+.+..+++.+...+..|+..+|++|++++.+. .++|..
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl-~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~ 901 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCL-QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFS 901 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHH
Confidence 236799999999 7899999999999665 78888999999998888777778899999999998432 368999
Q ss_pred HHHHHHhCCCccCCCc
Q 038206 466 VRKLMTDKGVTKEPGC 481 (614)
Q Consensus 466 ~~~~m~~~g~~~~~~~ 481 (614)
++++|...|+.|+...
T Consensus 902 l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 902 LLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHHHHcCCCCCccc
Confidence 9999999999998753
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-63 Score=544.76 Aligned_cols=497 Identities=16% Similarity=0.221 Sum_probs=388.1
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCC-CCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGS-FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~ 80 (614)
+..|++.|++++ |+++|++|...|+ .|+..++..++..|...+........... -.. +| . .+||.||..|++
T Consensus 377 y~~l~r~G~l~e---Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~-M~~-pd-~-~Tyn~LL~a~~k 449 (1060)
T PLN03218 377 YNRLLRDGRIKD---CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL-IRN-PT-L-STFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHCcCHHH---HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH-cCC-CC-H-HHHHHHHHHHHh
Confidence 456777777775 6788888887775 46777777777777766655333322222 123 56 6 888888888888
Q ss_pred -CChhHHHHHHhcCCC----CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 81 -ADLDYAFRVFYQIEN----PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 81 -g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
|+++.|.++|+.|.+ ||..+||++|.+|++. |++++|.++|++|.+.|+. ||..||+.+|.+|++.|++++|.
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHH
Confidence 888888888888864 7888888888888888 8888888888888888877 88888888888888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML------ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888883 46788888888888888888888888888887
Q ss_pred c-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCH
Q 038206 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP----KRDL 304 (614)
Q Consensus 230 ~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~ 304 (614)
. +.|+..+|+++|.+|++.|++++|..++..|.+. |+.||..+|++|+++|++.|++++|.++|+.|. .||.
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 7 8888888888888888888888888888888887 888888888888888888888888888888876 4678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
.+|++||.+|++.|++++|.++|++| ...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.|+.
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM-~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 88888888888888888888888888 7778888888888888888888888888888888865 588888888888888
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh-----------------------cCchHHHHHHHHHHHHh
Q 038206 385 LLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCKK-----------------------HASVVLSEEVAKQVIES 438 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~-----------------------~~~~~~a~~~~~~~~~~ 438 (614)
+|++.|++++|.++|++| ++.||..+|++|+..| .+ .+..+.|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc-~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC-LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 888888888888888887 6778888888887654 32 12245688888888888
Q ss_pred cCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 038206 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518 (614)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 518 (614)
|..||..||+.++.++.+.+.++.+..+++.|...+..++..++..++++. ..+ ..+|+. ++++|.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--------~~~--~~~A~~----l~~em~ 907 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--------GEY--DPRAFS----LLEEAA 907 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--------ccC--hHHHHH----HHHHHH
Confidence 888888888888877777788888888887777777666666665544431 111 245654 788899
Q ss_pred hCCccCCCC
Q 038206 519 SRGYTPDYS 527 (614)
Q Consensus 519 ~~g~~p~~~ 527 (614)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999965
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-63 Score=541.59 Aligned_cols=487 Identities=21% Similarity=0.307 Sum_probs=429.8
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHH
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (614)
++..+|+.+|.++.+. |++++|+++|++|...+ .. ||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||
T Consensus 85 ~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 6778999999999999 99999999999999875 45 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhH
Q 038206 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+. +.||..||+.++.+|++.+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 333 (614)
+.++|..+.+. |+.+|..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++| ..
T Consensus 243 ~~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~ 318 (697)
T PLN03081 243 GQQLHCCVLKT---GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RD 318 (697)
T ss_pred HHHHHHHHHHh---CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HH
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 038206 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413 (614)
Q Consensus 334 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 413 (614)
.|+.||..||++++.+|++.|++++|.+++..|.+ .|+.|+..+|++||++|+++|++++|.++|++|. +||..+|++
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~ 396 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA 396 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 99999999999999999999999999999999987 5999999999999999999999999999999997 689999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh-CCCccCCCccEEEECCEEEE
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD-KGVTKEPGCSSIEIDGIAHE 492 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~ 492 (614)
||.+| .++|+.++|.++|++|.+.|..||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..++...
T Consensus 397 lI~~y-~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l------- 468 (697)
T PLN03081 397 LIAGY-GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM------- 468 (697)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH-------
Confidence 99999 99999999999999999999999999999999999999999999999999976 5999987776643
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHH-HHHHHhhcCCCCCCcEEEEecc
Q 038206 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER-LAIALGILNLKPGMPIRVFKNL 571 (614)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~ 571 (614)
+.+....|+.+++.+. ++ +.++.||..+.. .-+..+.+.+.+.. .+. ....+++.+......+.+++.|
T Consensus 469 -i~~l~r~G~~~eA~~~----~~---~~~~~p~~~~~~-~Ll~a~~~~g~~~~-a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 469 -IELLGREGLLDEAYAM----IR---RAPFKPTVNMWA-ALLTACRIHKNLEL-GRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred -HHHHHhcCCHHHHHHH----HH---HCCCCCCHHHHH-HHHHHHHHcCCcHH-HHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 3344567888888763 33 347888865432 22222222221110 111 1112344444444566777889
Q ss_pred ccccchhhHHHHhhhccCceEEEec-------CCccccccCCcc
Q 038206 572 RVCKDCHEVTKLISRIFNVEIIVRD-------RARFHHFKDGSC 608 (614)
Q Consensus 572 ~~c~~~~~a~~~~~~~~~~~~~~~~-------~~~~h~~~~g~~ 608 (614)
..+|+..+|.+++.+|..+.+...+ .+..|.|-.|-.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 9999999999999999988653221 234566665543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.5e-24 Score=247.99 Aligned_cols=447 Identities=11% Similarity=0.074 Sum_probs=241.9
Q ss_pred hhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 038206 4 AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF 80 (614)
Q Consensus 4 ~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~ 80 (614)
.|...|++++ |++.|..+......+. .....+...+...++. ..+...+.+.. + .+ + .+++.+...|..
T Consensus 406 ~~~~~~~~~~---A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~-~~-~-~~~~~l~~~~~~ 477 (899)
T TIGR02917 406 SKLSQGDPSE---AIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQ-P-DN-A-SLHNLLGAIYLG 477 (899)
T ss_pred HHHhCCChHH---HHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C-CC-c-HHHHHHHHHHHh
Confidence 4555666665 4466665544322211 1112222223233332 33333333322 2 34 4 556666666666
Q ss_pred -CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 81 -ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 -g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|++++|.+.|+++.+ .+...+..+...+... |++++|.+.|+++...+ + .+..++..+...+...|+.++|..
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFEKVLTID-P-KNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-c-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665432 2344455555556665 66666666666666554 1 244455555566666666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCC
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 233 (614)
.+..+.+.+ +.+...+..+...|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++....+.
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666665544 33444555566666666666666666665532 24455666666666666666666666666544333
Q ss_pred ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHH
Q 038206 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSI 310 (614)
Q Consensus 234 d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l 310 (614)
+...+..+..++...|+.+.|...+..+.+. .+.+...+..+...+.+.|++++|.++++.+.+ .+...|..+
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALEL----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 4445555556666666666666666665543 233345556666666666666666666665542 244455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
...+...|++++|++.|+++ ... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKA-LKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHH-Hhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCc
Confidence 55666666666666666655 332 23334455555556666666666666665544 23334555555666666666
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 391 NIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
++++|.+.|+++ .. .++..+++.+...+ ...|+ ++|+..++++.+..|. ++..+..+..+|...|++++|.++++
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLY-LELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666554 11 22444555555555 55555 4455555555555555 45555555555555555555555555
Q ss_pred HHHhCC
Q 038206 469 LMTDKG 474 (614)
Q Consensus 469 ~m~~~g 474 (614)
++.+.+
T Consensus 862 ~a~~~~ 867 (899)
T TIGR02917 862 KAVNIA 867 (899)
T ss_pred HHHhhC
Confidence 555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=4.2e-24 Score=244.32 Aligned_cols=447 Identities=11% Similarity=-0.000 Sum_probs=366.3
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCCCCC-hhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNN-HSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~~p~-~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~ 77 (614)
...|.+.|++++ |++.|+++.+. .|+ ...+..+-..+...++. ...+....+... .+ . .....++..
T Consensus 370 ~~~~~~~g~~~~---A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-~-~~~~~l~~~ 440 (899)
T TIGR02917 370 GEAYLALGDFEK---AAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--EL-G-RADLLLILS 440 (899)
T ss_pred HHHHHHCCCHHH---HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cc-h-hhHHHHHHH
Confidence 356788899986 67889888654 343 33333333333333433 455555555442 23 4 667778888
Q ss_pred Hhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHH
Q 038206 78 ASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 78 ~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
|.+ |++++|.++++.+.. ++..+|+.+...+... |++++|...|+++.+.. + .+...+..+...+...|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIE-P-DFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHCCCHHH
Confidence 888 999999999998864 4677899999999999 99999999999998875 2 345567778888899999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
|.++++.+.+.+ +.+..++..+...|.+.|+.++|..+|+++.+ .+...+..++..|.+.|++++|+.+++++...
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999998876 45678899999999999999999999998833 35667888999999999999999999999876
Q ss_pred cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHH
Q 038206 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSW 307 (614)
Q Consensus 231 ~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~ 307 (614)
.+.+..++..+..++...|+++.+...+..+.+. .+.+...+..+...|.+.|++++|..+|+++. ..+..+|
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 6677888999999999999999999999999875 34466788899999999999999999999875 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038206 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387 (614)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (614)
..+...+...|++++|.++++.+ .... +++...+..+...+...|++++|...|+.+.. ..|+..++..+..++.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSL-QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHH
Confidence 99999999999999999999998 5543 44567777788889999999999999999875 3466677888999999
Q ss_pred HcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHH
Q 038206 388 RAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 465 (614)
+.|++++|.+.++++ ... .+...+..+...+ ...|+.++|.+.|+++.+..|+ ++.++..+..+|...|+ .+|..
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHH
Confidence 999999999999887 223 4677788888777 8899999999999999999998 88999999999999999 88999
Q ss_pred HHHHHHhC
Q 038206 466 VRKLMTDK 473 (614)
Q Consensus 466 ~~~~m~~~ 473 (614)
.+++..+.
T Consensus 825 ~~~~~~~~ 832 (899)
T TIGR02917 825 YAEKALKL 832 (899)
T ss_pred HHHHHHhh
Confidence 99988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.94 E-value=4.6e-27 Score=190.14 Aligned_cols=106 Identities=56% Similarity=0.922 Sum_probs=94.5
Q ss_pred CccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhh--------hcccccccHHHH
Q 038206 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK--------QSSLRLHSERLA 551 (614)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~a 551 (614)
+++|+.+ |.|+.||.+||+. ++..+|...||.|++..++ ++++++++ +..+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVG-HDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhC-CCchhhhhhhcccccchhhhhccHHHHH
Confidence 5778765 8899999999988 3556788899999999888 77666554 568899999999
Q ss_pred HHHhhcCCCCCCcEEEEecc-ccccchhhHHHHhhhccCceEEEecCCcccccc
Q 038206 552 IALGILNLKPGMPIRVFKNL-RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604 (614)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~-~~c~~~~~a~~~~~~~~~~~~~~~~~~~~h~~~ 604 (614)
++|||+++ +|+||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999996
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.3e-18 Score=178.70 Aligned_cols=298 Identities=16% Similarity=0.134 Sum_probs=178.1
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhc
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD---VYINNSLIHFYASC 183 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 183 (614)
.+... |++++|+..|+++.+.+ + .+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 44 ~~~~~-~~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 44 NFLLN-EQPDKAIDLFIEMLKVD-P-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHhc-CChHHHHHHHHHHHhcC-c-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34455 77777888887777765 1 2334666677777777777777777777766432221 23466667777777
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHH
Q 038206 184 GHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260 (614)
Q Consensus 184 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~ 260 (614)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+... .|+..
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~------------------------ 175 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSL------------------------ 175 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcc------------------------
Confidence 777777777777644 34556777777777777777777777766532 00000
Q ss_pred HHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCC
Q 038206 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337 (614)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 337 (614)
.......+..+...+.+.|++++|...|+++.+ | +...+..+...|.+.|++++|.++|+++ ...+..
T Consensus 176 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p~ 246 (389)
T PRK11788 176 --------RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV-EEQDPE 246 (389)
T ss_pred --------hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHChh
Confidence 000011244556666777777777777776542 2 3456666667777777777777777776 432211
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038206 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLD 416 (614)
Q Consensus 338 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 416 (614)
....++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 12344556666666677777777766666442 344445566666666666666666666554 44566666666665
Q ss_pred HHHHh--cCchHHHHHHHHHHHHhcCCCCc
Q 038206 417 ACCKK--HASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 417 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
.++.. +|+.+++..+++++.+.++.|++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55211 33556666666666655444333
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=2.9e-16 Score=181.23 Aligned_cols=493 Identities=11% Similarity=0.025 Sum_probs=297.4
Q ss_pred hhhhCCCCCCcchHHHHHHHhhhcCCCCChhh---HHHHH-HhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 038206 4 AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSS---LLSSL-TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS 79 (614)
Q Consensus 4 ~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~---~~~~l-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~ 79 (614)
.+.+.|++++ |++.|+..... ..|+... |...+ ..-.+...+......+++.. |.+ + .++..|...+.
T Consensus 121 ll~~~g~~~e---A~~~~~~~l~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~-~-~~~~~LA~ll~ 192 (1157)
T PRK11447 121 LLATTGRTEE---ALASYDKLFNG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGN-T-GLRNTLALLLF 192 (1157)
T ss_pred HHHhCCCHHH---HHHHHHHHccC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCC-H-HHHHHHHHHHH
Confidence 4677899987 66888887654 2333221 11111 11122333455555555543 255 6 78888888888
Q ss_pred c-CChhHHHHHHhcCCC-CC-----hhh-----------------HH---------------------------------
Q 038206 80 F-ADLDYAFRVFYQIEN-PN-----SFT-----------------WN--------------------------------- 102 (614)
Q Consensus 80 ~-g~~~~A~~~f~~m~~-~~-----~~~-----------------~~--------------------------------- 102 (614)
. |+.++|.+.|+++.. +. ... +.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 8 999999999987632 10 000 10
Q ss_pred -HHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch-hHH-------
Q 038206 103 -TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV-YIN------- 173 (614)
Q Consensus 103 -~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~------- 173 (614)
..-..+... |++++|+..|++..+.. + .+...+..+..++...|++++|...+++.++....... ..+
T Consensus 273 ~~~G~~~~~~-g~~~~A~~~l~~aL~~~-P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 273 RAQGLAAVDS-GQGGKAIPELQQAVRAN-P-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 011234556 88888888888888765 1 25667777778888888888888888888775532211 111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 174 -----NSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 174 -----~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|++.|++..+..+.+...+..+...+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1223456778888888888887733 24556777888888888888888888888765233333333332222
Q ss_pred ------------------------------------------HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 246 ------------------------------------------AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 246 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
...|+.++|...++...+. .+.+..++..+...|
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDL 505 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 2344555555555555443 122334444555555
Q ss_pred HhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH---------HHHHHHHHHh
Q 038206 284 CKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI---------TFVGVLSACN 351 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~---------t~~~ll~a~~ 351 (614)
.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++.+ ......++.. .+......+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l-~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL-PRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC-CchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555442 12 3333333333344455555555555544 2211111111 1122344556
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
..|+.++|..+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..+...+ ...|+.++|+
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~-~~~g~~~eA~ 657 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD-IAQGDLAAAR 657 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHH
Confidence 66777777766551 2345566778889999999999999999887 3445 577888888888 8889999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHH
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (614)
+.++.+.+..|. +...+..+..++...|++++|.++++++....-..++......+-.. ...-....++.+++.+.
T Consensus 658 ~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~---~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 658 AQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD---AARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH---HHHHHHHcCCHHHHHHH
Confidence 999999888877 77778888899999999999999999887653222221100000000 00001135677777776
Q ss_pred HHHHHHHHhhCCccCCC
Q 038206 510 LDLIDEKLKSRGYTPDY 526 (614)
Q Consensus 510 ~~~l~~~m~~~g~~p~~ 526 (614)
+++. |...|+.|+.
T Consensus 734 y~~A---l~~~~~~~~~ 747 (1157)
T PRK11447 734 YKDA---MVASGITPTR 747 (1157)
T ss_pred HHHH---HhhcCCCCCC
Confidence 6554 4455776653
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=1.4e-15 Score=175.59 Aligned_cols=406 Identities=12% Similarity=0.041 Sum_probs=295.8
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CCh---hhHHHH------------HHHHHcC
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNS---FTWNTL------------IRACARS 111 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~ 111 (614)
...+...++.. |.+ + .++..|...|.+ |++++|+..|++..+ |+. ..|..+ -..+.+.
T Consensus 289 ~~~l~~aL~~~--P~~-~-~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 289 IPELQQAVRAN--PKD-S-EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHhC--CCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 44455555433 245 6 777777777777 888888888877654 321 223222 2245566
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 112 ~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
|++++|+..|++..+.. + .+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .++.++|..
T Consensus 365 -g~~~eA~~~~~~Al~~~-P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 365 -NNLAQAERLYQQARQVD-N-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred -CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 88888888888888775 1 244556667777888888888888888888754 234455666666664 456788888
Q ss_pred HHhhcCCCC------------hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHH
Q 038206 192 VFDNMLERS------------LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHA 259 (614)
Q Consensus 192 ~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~ 259 (614)
+++.+.... ...+..+...+...|++++|++.|++..+..+-+...+..+...+...|+.++|...++
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 887764321 12345566778889999999999999887644455667788888999999999999999
Q ss_pred HHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CHH---------HHHHHHHHHHhcCCHHHHHHH
Q 038206 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR----DLT---------SWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~~~~~g~~~~A~~l 326 (614)
.+.+. .+.+...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|+++
T Consensus 520 ~al~~----~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 520 RLAQQ----KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHc----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99874 2334555555666778899999999999988632 111 123456678899999999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038206 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK 405 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 405 (614)
++. .+++...+..+...+.+.|+.++|...|+...+. -+.+...+..++..|...|++++|++.++.. ...
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 862 2334455667788899999999999999999763 3346788899999999999999999999987 334
Q ss_pred C-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhhcCChhhHHHHHHHHH-hCCCcc
Q 038206 406 P-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS-----GVYVLLSRVYASARRWNDVGLVRKLMT-DKGVTK 477 (614)
Q Consensus 406 p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 477 (614)
| +..++..+..++ ...|++++|.++++++++..+...+ ..+..+..++...|++++|...+++.. ..|+.|
T Consensus 668 p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 NDSLNTQRRVALAW-AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCChHHHHHHHHHH-HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 5 455666677777 8899999999999999987665222 355667889999999999999998874 335543
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.5e-17 Score=170.98 Aligned_cols=291 Identities=13% Similarity=0.134 Sum_probs=216.1
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhcCC
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-------LVSWNVMIDAFVQFGE 216 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~ 216 (614)
.+...|++++|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445567777777777777654 2344566667777777777777777776663321 1345666666777777
Q ss_pred hhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHH
Q 038206 217 FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296 (614)
Q Consensus 217 ~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 296 (614)
+++|..+|+++.+. .+.+..+++.++..|.+.|++++|.+.|
T Consensus 123 ~~~A~~~~~~~l~~--------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 123 LDRAEELFLQLVDE--------------------------------------GDFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHcC--------------------------------------CcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 77777777666532 2234556777777777778888887777
Q ss_pred hcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 038206 297 ESMPKR--D------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 297 ~~m~~~--~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
+.+.+. + ...|..+...+.+.|+.++|.+.|+++ ... .|+ ...+..+...+.+.|++++|.++++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA-LAA--DPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776532 1 124566777888999999999999998 443 344 4567778888999999999999999997
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
+. .-......++.++.+|.+.|++++|.+.++++ ...|+...+..+...+ .+.|++++|..+++++.+..|+ ..+
T Consensus 242 ~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~-~~~g~~~~A~~~l~~~l~~~P~--~~~ 317 (389)
T PRK11788 242 EQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLL-EEQEGPEAAQALLREQLRRHPS--LRG 317 (389)
T ss_pred HH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCcC--HHH
Confidence 53 21222466889999999999999999999987 4568877788888888 9999999999999999998655 567
Q ss_pred HHHHHHHHhh---cCChhhHHHHHHHHHhCCCccCCC
Q 038206 447 YVLLSRVYAS---ARRWNDVGLVRKLMTDKGVTKEPG 480 (614)
Q Consensus 447 ~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 480 (614)
+..++..+.. .|+.+++..++++|.++++.++|.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777664 569999999999999999999887
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=7.6e-17 Score=158.51 Aligned_cols=376 Identities=13% Similarity=0.131 Sum_probs=310.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH-H
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL-K 143 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~ 143 (614)
..|+.+.+.+.. |++++|..+++.+.+ ..+..|..+-.++... |+.+.|...|.+.++.+ |+.....+-+ .
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~-~~~~~a~~~~~~alqln---P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ-GDLELAVQCFFEALQLN---PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc-CCCcccHHHHHHHHhcC---cchhhhhcchhH
Confidence 678889998888 999999999998876 3567898899999999 99999999999999877 7765443333 3
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChhHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 220 (614)
.....|++++|...+.+.++... --..+|+.|-..+-..|++..|+.-|++..+-| ...|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 34457899999999998887542 235678999999999999999999999986654 35788899999999999999
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038206 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 221 ~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m 299 (614)
+..|.+....-+-....+..+...|-..|.++.|...++..+.. .|+ +..|+.|.+++-..|++.+|.+.+++.
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-----~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-----QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-----CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99998887653445667777777888999999999999999864 454 678999999999999999999999987
Q ss_pred C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC
Q 038206 300 P--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375 (614)
Q Consensus 300 ~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 375 (614)
. .| ...+.+-|...|...|.+++|..+|... ..+.|.. ..++.|...|-+.|++++|..-+++.+ .+.|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~ 420 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPT 420 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCch
Confidence 6 23 4567888999999999999999999865 3366765 678889999999999999999999885 67786
Q ss_pred -hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 376 -LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 376 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|-+.+ ...|++.+|++.++..+++.|+ -+..|..++.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~-kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh 498 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY-KDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLH 498 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh-hccCCcHHHHHHHHHHHccCCC-CchhhhHHHH
Confidence 578999999999999999999988876 67775 45778888888 9999999999999999999999 6777766665
Q ss_pred HHhhcCChhh
Q 038206 453 VYASARRWND 462 (614)
Q Consensus 453 ~~~~~g~~~~ 462 (614)
+.---.+|.+
T Consensus 499 ~lq~vcdw~D 508 (966)
T KOG4626|consen 499 CLQIVCDWTD 508 (966)
T ss_pred HHHHHhcccc
Confidence 5544344443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.4e-15 Score=164.78 Aligned_cols=384 Identities=9% Similarity=0.051 Sum_probs=268.7
Q ss_pred HHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC
Q 038206 74 IIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150 (614)
Q Consensus 74 li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~ 150 (614)
+...|.+ |+++.|...|++... |+...|..+-.+|.+. |++++|++.+...++.. + .+...+..+..++...|+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~-p-~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD-P-DYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCC
Confidence 3444445 788888888877543 6666777777777777 88888888887777765 1 234567777777778888
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH-----------------------
Q 038206 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM----------------------- 207 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----------------------- 207 (614)
+++|..-+..+...+-..+..... ++.-+.+......+...++.-+. +..++..+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 888877776555443222221111 11111111112222222222111 11111110
Q ss_pred -------HHHH------HhcCChhHHHHHHHHhhhc--cCC-ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc
Q 038206 208 -------IDAF------VQFGEFDSALKLFRRMQIL--FEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271 (614)
Q Consensus 208 -------i~~~------~~~g~~~~A~~~~~~m~~~--~~p-d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (614)
+..+ ...+++++|++.|++.... ..| +...+..+...+...|+++.|...++.+++. -+.
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~ 363 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPR 363 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC
Confidence 0000 1236788999999988764 334 3456677777778899999999999999874 223
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVL 347 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll 347 (614)
....|..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..|++. .. +.|+ ...+..+.
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka-l~--l~P~~~~~~~~la 440 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS-ID--LDPDFIFSHIQLG 440 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--cCccCHHHHHHHH
Confidence 35678888999999999999999998765 336788999999999999999999999987 44 3454 45666777
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHH
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-------V-IWRSLLDAC 418 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~~~ 418 (614)
.++.+.|++++|...|+...+ ..+.+...++.+...+...|++++|.+.|++. ...|+. . .++..+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 788999999999999999875 33446788899999999999999999999885 333421 1 122222233
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
...|++++|.+.++++++.+|. +...+..+..+|.+.|++++|.+.|++..+.
T Consensus 519 -~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 -QWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred -HHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4568999999999999999988 7778999999999999999999999987653
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=4.9e-14 Score=155.71 Aligned_cols=391 Identities=10% Similarity=0.010 Sum_probs=228.7
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcC
Q 038206 36 LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARS 111 (614)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 111 (614)
|..+....+....+..++...... .|.+ . ..+..+...+.. |++++|..+|++... | +...+..+...+...
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~--~~~~-a-~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH--MQLP-A-RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 555555555554445555554442 2133 4 567777777777 888888888877432 3 455566666777777
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 112 ~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
|++++|+..+++..+.. |+...+..+..++...|+.++|...++.+++... .+...+..+..++.+.|..+.|++
T Consensus 97 -g~~~eA~~~l~~~l~~~---P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 97 -GQYDEALVKAKQLVSGA---PDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred -CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 88888888888887765 4332266666677778888888888888877642 244555567777777788888888
Q ss_pred HHhhcCCCChh--------HHHHHHHHHH-----hcCCh---hHHHHHHHHhhhc--cCCChh-hHHH----HHHHHHhh
Q 038206 192 VFDNMLERSLV--------SWNVMIDAFV-----QFGEF---DSALKLFRRMQIL--FEPDGY-TFQS----ITSACAGL 248 (614)
Q Consensus 192 ~f~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~--~~pd~~-t~~~----ll~a~~~~ 248 (614)
.++.... +.. ....++.... ..+++ ++|++.++.+... ..|+.. .+.. .+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 8877654 211 1112222221 11223 5677777777644 222221 1111 12334455
Q ss_pred CchhHHHHHHHHHHHhccCCCC-ccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCH
Q 038206 249 ATLSLGMWAHAYILRHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-------LTSWNSIILGFALHGRA 320 (614)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~ 320 (614)
++.++|...++.+.+. +-+ |+. ....+...|...|++++|+..|+++.+.+ ...+..+..++...|++
T Consensus 251 g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 251 DRYKDVISEYQRLKAE---GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred hhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6777777777776654 311 211 12224556777777777777777654211 23344555566777777
Q ss_pred HHHHHHHHHHhhhcC-----------CCccH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 038206 321 EAALKYFDRLVVEES-----------FSPNS---ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (614)
++|.++++.+ .... -.|+. ..+..+...+...|++++|.+.++.+.. ..+.+...+..+...+
T Consensus 327 ~eA~~~l~~~-~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 327 PGALTVTAHT-INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVL 403 (765)
T ss_pred HHHHHHHHHH-hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 7777777766 3321 11221 1233444556666777777777777654 2333556666777777
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch
Q 038206 387 ARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
...|++++|++.+++. ...|+ ...+..+...+ ...+++++|+.+++++++..|+ ++.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a-l~~~~~~~A~~~~~~ll~~~Pd-~~~ 462 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTA-LDLQEWRQMDVLTDDVVAREPQ-DPG 462 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCC-CHH
Confidence 7777777777777665 34454 33444444444 6666777777777777777666 443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=3.2e-14 Score=157.11 Aligned_cols=393 Identities=8% Similarity=-0.008 Sum_probs=288.4
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 144 (614)
....-.+....- |+.++|.+++.+... .+...+..+...+... |++++|.++|++..+.. + .+...+..+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~-P-~~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLE-P-QNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Confidence 344445555556 999999999988764 3444588888889898 99999999999998875 2 345567777788
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHH
Q 038206 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 221 (614)
+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...+++..+ | +...+..+...+...|..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 899999999999999999874 44555 88889999999999999999999843 3 4556777888888999999999
Q ss_pred HHHHHhhhccCCChh------hHHHHHHHHH-----hhCch---hHHHHHHHHHHHhccCCCCcccc-HH-HH---HHHH
Q 038206 222 KLFRRMQILFEPDGY------TFQSITSACA-----GLATL---SLGMWAHAYILRHCDHSLVTDVL-VN-NS---LIDM 282 (614)
Q Consensus 222 ~~~~~m~~~~~pd~~------t~~~ll~a~~-----~~~~~---~~~~~~~~~~~~~~~~g~~~~~~-~~-~~---li~~ 282 (614)
+.++.... .|+.. .....+.... ..+.+ +.|...++.+.+.. ...|+.. .+ .. .+..
T Consensus 171 ~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~--~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW--HDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc--ccCCccchHHHHHHHHHHHH
Confidence 99987654 33310 1111222221 11223 55666666666531 1122211 11 11 1234
Q ss_pred HHhcCCHHHHHHHHhcCCCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCc--cHHHHHHHHHHHhccCC
Q 038206 283 YCKCGSLDIARQVFESMPKRD---L-TSWNSIILGFALHGRAEAALKYFDRLVVEES-FSP--NSITFVGVLSACNHRGM 355 (614)
Q Consensus 283 y~~~g~~~~A~~~~~~m~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p--~~~t~~~ll~a~~~~g~ 355 (614)
+...|++++|...|+.+.+.+ + ..-..+...|...|++++|+..|+++ .... ..+ .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~-l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL-FYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH-hhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 457799999999999988532 1 11122467899999999999999988 4322 111 12445666778899999
Q ss_pred HHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYN----------ITPV---LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCK 420 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 420 (614)
+++|.++++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+ .
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~-~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL-Q 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 9999999999975311 1122 234567888999999999999999987 3334 567788888888 9
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..|++++|++.++++++..|+ +...+..++..+.+.|++++|..+++++.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999 8888889999999999999999999998764
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.9e-14 Score=155.53 Aligned_cols=326 Identities=12% Similarity=0.059 Sum_probs=222.8
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 038206 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181 (614)
Q Consensus 102 ~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (614)
-.++..+.+. |++++|+.+++........ +...+..++.++...|+++.|.+.++.+.+.. +.+...+..+...+.
T Consensus 46 ~~~~~~~~~~-g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 46 ILFAIACLRK-DETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHhc-CCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455666677 8888888888777776522 23344445555666788888888888877754 334556777777788
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHH
Q 038206 182 SCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
+.|++++|...|++..+ | +...|..+...+...|++++|...++++....+.+...+.. +..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 88888888888877633 3 45577777778888888888888887665442222222222 23466778888888777
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHh
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEA----ALKYFDRLV 331 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~ 331 (614)
..+.+. ...++......+...+.+.|++++|...|+...+ .+...+..+...|.+.|+.++ |+..|++.
T Consensus 201 ~~~l~~---~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A- 276 (656)
T PRK15174 201 RALLPF---FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA- 276 (656)
T ss_pred HHHHhc---CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH-
Confidence 776654 2223334445556777888888888888877652 356677778888888888875 78888876
Q ss_pred hhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 038206 332 VEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAV 409 (614)
Q Consensus 332 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 409 (614)
.. ..|+. ..+..+...+...|++++|...++...+. -+.+...+..+...|.+.|++++|.+.++++ ...|+..
T Consensus 277 l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 277 LQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 33 34543 56677777788888888888888887652 2224556667788888888888888888876 3456654
Q ss_pred HHHH-HHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 410 IWRS-LLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 410 ~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+.. +..++ ...|+.++|...|+++.+..|+
T Consensus 353 ~~~~~~a~al-~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAAL-LQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhChh
Confidence 4443 34455 7788888888888888888776
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.75 E-value=8.6e-16 Score=151.23 Aligned_cols=356 Identities=14% Similarity=0.196 Sum_probs=298.0
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH-HHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI-NNSL 176 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l 176 (614)
..+|+.+-..+-.. |++++|+.+|+.|++... -....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+
T Consensus 116 ae~ysn~aN~~ker-g~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKER-GQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHh-chHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 45788888888888 999999999999999762 25678999999999999999999999999874 455443 3445
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC-hhhHHHHHHHHHhhCchh
Q 038206 177 IHFYASCGHLDLANKVFDNMLE--RS-LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD-GYTFQSITSACAGLATLS 252 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd-~~t~~~ll~a~~~~~~~~ 252 (614)
-...-..|++++|...+.+..+ |. .+.|+.|...+-..|+...|+.-|++.... .|+ ...|..+-..+...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcch
Confidence 5555667999999988877543 43 468999999999999999999999988764 343 446777888888888899
Q ss_pred HHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRD-LTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
.|...+...... .| ...++..+...|...|.++-|.+.+++.. +|+ ...|+-|..++-..|+..+|.+.+.
T Consensus 270 ~Avs~Y~rAl~l-----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNL-----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhc-----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 998888887754 44 46677788888999999999999999877 344 5789999999999999999999998
Q ss_pred HHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038206 329 RLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMK 405 (614)
Q Consensus 329 ~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 405 (614)
+. .. ..|+. ...+.|-..+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|..-+++. .++
T Consensus 345 ka-L~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 345 KA-LR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HH-HH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 76 33 45654 667889999999999999999999885 45554 567889999999999999999999887 788
Q ss_pred CC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 406 PD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 406 p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|+ ...++.+-..| ...|+++.|.+.+.+++..+|. -...++.|..+|-.+|++.+|..-++...+
T Consensus 419 P~fAda~~NmGnt~-ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 419 PTFADALSNMGNTY-KEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHHHhcchHH-HHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 87 45889999999 9999999999999999999998 788899999999999999999999988765
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3e-13 Score=149.74 Aligned_cols=441 Identities=10% Similarity=0.028 Sum_probs=288.5
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHH---
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF--- 77 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~--- 77 (614)
|++.|.+.|++++ |+..+++..+. .|+...|...+...........++..+.+... .+ . .++..+...
T Consensus 84 LA~~yl~~g~~~~---A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P--~n-~-~~~~~la~~~~~ 154 (987)
T PRK09782 84 LAEAYRHFGHDDR---ARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVTTVEELLAQQK--AC-D-AVPTLRCRSEVG 154 (987)
T ss_pred HHHHHHHCCCHHH---HHHHHHHHHhc--CcccHHHHHHHHHhccChhHHHHHHHHHHhCC--CC-h-hHHHHHHHHhhc
Confidence 3567888888886 45777666543 56666666666656555555666777776653 34 4 566666665
Q ss_pred -----Hhc-CChhHHHHHHhcCCCC--ChhhHHHH-HHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc-
Q 038206 78 -----ASF-ADLDYAFRVFYQIENP--NSFTWNTL-IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY- 147 (614)
Q Consensus 78 -----~~~-g~~~~A~~~f~~m~~~--~~~~~~~l-i~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~- 147 (614)
|.+ +....|++ .+...| +..+.... ...|.+. +++++|++++.++.+.+. .+..-...+-.++..
T Consensus 155 ~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l-~dw~~Ai~lL~~L~k~~p--l~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 155 QNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL-KQWSQADTLYNEARQQNT--LSAAERRQWFDVLLAG 229 (987)
T ss_pred cchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH-hCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHh
Confidence 666 55555555 233334 34444444 7888888 999999999999999872 233345556667766
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHH--HH--------------
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-----RSLVSW--NV-------------- 206 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~--~~-------------- 206 (614)
.++ +.+..++.. .++.++.+..++.+.|.+.|+.++|.+++.++.. |+..+| +.
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 366 667666442 3446888899999999999999999999987721 100000 00
Q ss_pred --------------HHH---------------------------------------------------------------
Q 038206 207 --------------MID--------------------------------------------------------------- 209 (614)
Q Consensus 207 --------------li~--------------------------------------------------------------- 209 (614)
++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 000
Q ss_pred HHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhh--------------------------------------
Q 038206 210 AFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGL-------------------------------------- 248 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~-------------------------------------- 248 (614)
-.++.|+.++|..+|+..... ..++.....-++..+...
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 123445556666666555431 111111111222222222
Q ss_pred -------------------------CchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 038206 249 -------------------------ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-- 301 (614)
Q Consensus 249 -------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-- 301 (614)
+..++|...+...... .|+......+...+...|++++|...|+++..
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~-----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR-----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 2333444444444432 23332222334444578888888888876652
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
++...+..+...+.+.|+.++|...+++. ... .|+. ..+..+.......|++++|...++...+ ..|+...+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qA-L~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~ 613 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQA-EQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYV 613 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHH
Confidence 44455666677778888888888888877 443 2443 2233333445566999999999988864 456788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
.+..++.+.|+.++|+..+++. ...|+ ...++.+-..+ ...|+.++|+..++++++..|. ++..+..+..+|...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL-~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL-WDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 9999999999999999999887 55665 45556666666 8899999999999999999999 8899999999999999
Q ss_pred ChhhHHHHHHHHHhC
Q 038206 459 RWNDVGLVRKLMTDK 473 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~ 473 (614)
++++|...+++..+.
T Consensus 692 d~~eA~~~l~~Al~l 706 (987)
T PRK09782 692 DMAATQHYARLVIDD 706 (987)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988654
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.4e-13 Score=130.18 Aligned_cols=345 Identities=19% Similarity=0.236 Sum_probs=250.6
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038206 88 RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167 (614)
Q Consensus 88 ~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 167 (614)
-+|+..| ++..+|..||.++++- ...+.|.++|++-.....+ .+..+||.+|.+.+- ..++++..+|....+.
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKF-SSLERARELYKEHRAAKGK-VYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 4444443 5678999999999999 9999999999999988877 899999999988653 3448999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHH----hhc----CCCChhHHHHHHHHHHhcCChhH-HHHHHHHhhhc-----cCC
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVF----DNM----LERSLVSWNVMIDAFVQFGEFDS-ALKLFRRMQIL-----FEP 233 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f----~~m----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~-----~~p 233 (614)
||..|+|+++++.++.|+++.|.+.+ .+| .+|...+|..+|..+.+.++..+ |..++.++... ++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999988766554 455 57889999999999999988754 55666666543 333
Q ss_pred ----ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC-CCcc---ccHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 038206 234 ----DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS-LVTD---VLVNNSLIDMYCKCGSLDIARQVFESMPK---- 301 (614)
Q Consensus 234 ----d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g-~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~---- 301 (614)
|..-|.+.+..|.+..+.+.|.++++.+....... +.|+ ..-|..+....|....++.-...|+.|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 45567889999999999999999999887642222 2333 34566788888889999999999998873
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC-C---H----------HHHHHHHHHH-
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG-M---V----------SEGRDYFDVM- 366 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g-~---~----------~~a~~~~~~~- 366 (614)
|+..+-..++.+....|.++-.-++|..| ...|-.-+...-.-++.-.++.. . . +-|..+++..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778888888889988888888888 66664444433333333333322 1 1 0111111111
Q ss_pred ---HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 367 ---INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 367 ---~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
.+...........++..-.+.|.|..++|.++|.-+ +..|.....--++.+. .+.++...|..+++.+.
T Consensus 510 ~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a-~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 510 SQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA-KVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHH
Confidence 000123334556677888889999999999887654 3345444445666666 67778888888888886
Q ss_pred HhcCC
Q 038206 437 ESEGG 441 (614)
Q Consensus 437 ~~~~~ 441 (614)
..+..
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 65544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=1e-13 Score=150.36 Aligned_cols=369 Identities=12% Similarity=0.029 Sum_probs=263.2
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
...+...++ +. |+ + ..|..+...|.+ |++++|...++...+ | +...|..+-.+|... |++++|+.-|...
T Consensus 147 i~~y~~al~--~~-p~-~-~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l-g~~~eA~~~~~~~ 220 (615)
T TIGR00990 147 IKLYSKAIE--CK-PD-P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL-GKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHh--cC-Cc-h-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 444444444 45 56 6 778888888888 999999999988765 3 556788888899999 9999999988877
Q ss_pred HHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-----------------------------CchhHHHHH
Q 038206 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV-----------------------------SDVYINNSL 176 (614)
Q Consensus 126 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----------------------------~~~~~~~~l 176 (614)
...+.. +......++..... ..+........+.... .+......+
T Consensus 221 ~~~~~~--~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 221 CIIDGF--RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHhCCC--ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 655422 22222222222111 1111111111111100 000001111
Q ss_pred HHHH------HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHH
Q 038206 177 IHFY------ASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244 (614)
Q Consensus 177 i~~~------~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a 244 (614)
+..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.....+-+..+|..+...
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 1111 1236789999999887532 345788888999999999999999999876533335578888888
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHH
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNSIILGFALHGRAE 321 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 321 (614)
+...|+++.+...+..+.+. .+.+..++..+...|...|++++|...|++..+ | +...|..+...+.+.|+.+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 89999999999999999875 344577899999999999999999999998763 3 5678888889999999999
Q ss_pred HHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--h------hHHHHHHHHHHHcCCH
Q 038206 322 AALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV--L------EHYGCLVDLLARAGNI 392 (614)
Q Consensus 322 ~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~------~~~~~li~~~~~~g~~ 392 (614)
+|+..|++. .. ..|+ ...+..+...+...|++++|...|+...+ +.|+ . ..++.....+...|++
T Consensus 451 eA~~~~~~a-l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 451 SSMATFRRC-KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HHHHHHHHH-HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999987 43 2344 46777888889999999999999999865 2232 1 1122223344457999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 393 DEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 393 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
++|.+++++. ...|+ ...+..+...+ ...|++++|.+.|+++.+....
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~-~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLL-LQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHhcc
Confidence 9999999885 55564 45688888888 9999999999999999988665
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=5.5e-14 Score=152.01 Aligned_cols=327 Identities=9% Similarity=0.020 Sum_probs=259.2
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 210 (614)
+..-...++..+...|+++.|..++...+.....+.. ....+.......|+++.|...|+++.+ | +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445666778888999999999999999987655444 444455666679999999999999843 3 45678889999
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
+.+.|++++|+..|++.....+.+...+..+..++...|+.+.|...+..+... . +.+...+..+ ..+...|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~-P~~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---V-PPRGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---C-CCCHHHHHHH-HHHHHcCCHH
Confidence 999999999999999998754555667888889999999999999999988765 2 2223333333 3478899999
Q ss_pred HHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHH----HHH
Q 038206 291 IARQVFESMPKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSE----GRD 361 (614)
Q Consensus 291 ~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~ 361 (614)
+|...++.+.+. +...+..+...+.+.|+.++|+..+++. ... .|+ ...+..+...+...|++++ |..
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a-l~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA-LAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH-Hhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 999999987542 3344555667889999999999999998 543 344 4566677888899999985 899
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
.|+...+ --+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+...+ ...|++++|...++++.+..
T Consensus 272 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l-~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 272 HWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL-RQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC
Confidence 9998875 22336778899999999999999999999887 44564 45666677777 89999999999999999998
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
|. +...+..+..++...|++++|...+++..+.
T Consensus 349 P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88 5555666788899999999999999987654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=3.5e-12 Score=141.45 Aligned_cols=438 Identities=11% Similarity=0.037 Sum_probs=294.9
Q ss_pred CCCCCcchHHHHHHHhhhcCCCCC-hhhHHHHHHh--------ccCcchHHHHHHHHHHhCCCCCCchHHHHHHH-HHHH
Q 038206 9 GPPTPQTHSHSIFNNNRNEGSFNN-HSSLLSSLTE--------CKSMSQLKQIHAQALRTALPQQHKTLLIYSRI-IHFA 78 (614)
Q Consensus 9 g~~~~a~~al~~~~~m~~~g~~p~-~~~~~~~l~~--------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l-i~~~ 78 (614)
+++.+ |..+++++... .|+ ...+..+... +...+....... ....... ++ + .+.... ...|
T Consensus 122 ~~~~k---A~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~-~~-~-~vL~L~~~rlY 192 (987)
T PRK09782 122 PVEVK---SVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAAS-PE-G-KTLRTDLLQRA 192 (987)
T ss_pred ccChh---HHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCC-CC-c-HHHHHHHHHHH
Confidence 55555 66999998765 333 2223222222 444454433333 3333333 34 4 444444 8899
Q ss_pred hc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHc-CCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHH
Q 038206 79 SF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACAR-SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 79 ~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~-~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
.. |++++|.+++.++.+ | +..-+..+-.+|.. . ++ +++..+++. ... -|......+...+...|+.++
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l-~~-~~a~al~~~----~lk-~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ-LD-DRLLALQSQ----GIF-TDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-CH-HHHHHHhch----hcc-cCHHHHHHHHHHHHHCCCHHH
Confidence 98 999999999999876 3 33335556667777 3 55 777777553 222 467788899999999999999
Q ss_pred HHHHHHHHHHhCCC-Cchh------------------------------HHHHHHHHHHhcCCHHHHHHH----------
Q 038206 154 GKQAHAHIFKRGLV-SDVY------------------------------INNSLIHFYASCGHLDLANKV---------- 192 (614)
Q Consensus 154 a~~~~~~~~~~g~~-~~~~------------------------------~~~~li~~~~~~g~~~~A~~~---------- 192 (614)
|.+++..+...-.. |... ..-.++..+.+.++++.+.++
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 99888775432111 1111 111223444444444433333
Q ss_pred -----------------------------------------------------HhhcCC--C------------------
Q 038206 193 -----------------------------------------------------FDNMLE--R------------------ 199 (614)
Q Consensus 193 -----------------------------------------------------f~~m~~--~------------------ 199 (614)
|+.... +
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 222100 0
Q ss_pred --------------------------------------------------ChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 200 --------------------------------------------------SLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 200 --------------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+...|..+..++.. ++.++|+..|.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 11122333333333 455566665555544
Q ss_pred ccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HHH
Q 038206 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD---LTS 306 (614)
Q Consensus 230 ~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~ 306 (614)
. .|+......+..++...|+.+.|...++.+... +|+...+..+...+.+.|+.++|...|+...+.+ ...
T Consensus 505 ~-~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l 578 (987)
T PRK09782 505 R-QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL 578 (987)
T ss_pred h-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH
Confidence 3 455544444455556899999999999887543 4555556777888999999999999998776432 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (614)
+..+.....+.|++++|+..+++. .. ..|+...+..+..++.+.|+.++|...++...+ --+.+...++.+...+
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~A-L~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRS-LN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH-HH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 333333444569999999999987 43 567778888888999999999999999999975 2333677888898999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 387 ARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
...|+.++|++.+++. ...| +...+..+-.++ ...|++++|+..++++++..|. +..+.........+..+++.+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN-QRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999987 4456 566788888888 9999999999999999999998 7788888888888899999999
Q ss_pred HHHHHHHhCCCc
Q 038206 465 LVRKLMTDKGVT 476 (614)
Q Consensus 465 ~~~~~m~~~g~~ 476 (614)
+-+++-...+..
T Consensus 732 ~~~~r~~~~~~~ 743 (987)
T PRK09782 732 EEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHhhcCcc
Confidence 888776554443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=5.6e-12 Score=136.97 Aligned_cols=392 Identities=10% Similarity=0.030 Sum_probs=254.7
Q ss_pred HHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHH---HHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHcc
Q 038206 73 RIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLI---RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148 (614)
Q Consensus 73 ~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 148 (614)
.++..+.. |+.++|+..+++...|+...+..+. ..+... |++++|+++|+++.+... -|...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQSSLKKDP--TNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhc
Confidence 66666666 7777777777777665444444333 245555 777777777777777662 1334455556666777
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-...|+++..
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 7777777777777654 34444444444445445555557777777633 3 34456666677777777777776665
Q ss_pred HhhhccCCChhhH------HHHHHHH-----HhhCc---hhHHHHHHHHHHHhccCCCCccccH-HHHH---HHHHHhcC
Q 038206 226 RMQILFEPDGYTF------QSITSAC-----AGLAT---LSLGMWAHAYILRHCDHSLVTDVLV-NNSL---IDMYCKCG 287 (614)
Q Consensus 226 ~m~~~~~pd~~t~------~~ll~a~-----~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l---i~~y~~~g 287 (614)
+-..-+.|...-. ...++-- ..... .+.+..-.+.+.... ...++.... ..+. +-++.+.|
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~-~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW-GKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc-cCCCccchHHHHHHHHHHHHHHHhh
Confidence 5332222211111 0111000 01111 222333333333321 012222222 2333 44667889
Q ss_pred CHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC----CCccHHHHHHHHHHHhccCCHHHH
Q 038206 288 SLDIARQVFESMPKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEES----FSPNSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 288 ~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g----~~p~~~t~~~ll~a~~~~g~~~~a 359 (614)
+..++.+.|+.++.+ -..+--++.++|...+++++|+.++++.....+ ..++......|..++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999843 234556788999999999999999998833332 122333357889999999999999
Q ss_pred HHHHHHHHHhcCC----------CCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 360 RDYFDVMINEYNI----------TPV---LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 360 ~~~~~~~~~~~~~----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
..+++.+.+.... .|+ ...+..++..+...|++.+|++.++++ ..-| |...+..+-..+ ...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~-~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY-LARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC
Confidence 9999999752110 122 223455777888999999999999998 2334 777888888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+.+|++.++.+....|. +..+....+..+...|+|++|..+.+...+
T Consensus 466 p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 466 PRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999998 888899999999999999999988877654
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=2.1e-12 Score=140.24 Aligned_cols=392 Identities=11% Similarity=0.057 Sum_probs=282.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChh-hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcch-HHHH--H
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSF-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT-FPFA--L 142 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t-~~~l--l 142 (614)
..|...|..+..|+++.|+..|++..+ |+.. ....++..+... |+.++|+..+++... |+... +..+ .
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~-----p~n~~~~~llalA 109 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQS-----SMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhcc-----CCCCCHHHHHHHH
Confidence 456667766666999999999999876 4431 233788888888 999999999999882 43333 3333 4
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh--cCChhHH
Q 038206 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ--FGEFDSA 220 (614)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A 220 (614)
..+...|+++.|.++++.+++... .++.++..++..|.+.++.++|++.++++...+......+..+|.. .++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 567788999999999999999863 3467777889999999999999999999966544333234445544 5666669
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccH------HHHHHHHH---H--hcCC-
Q 038206 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV------NNSLIDMY---C--KCGS- 288 (614)
Q Consensus 221 ~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~li~~y---~--~~g~- 288 (614)
++.++++....+-+...+.....+..+.|....+.++...-... +.+.... ...+|..- . ...+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999998875556667788888888888888887655432211 1111100 01111100 0 1112
Q ss_pred --HHHHHHHHhcCCC-----CCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH
Q 038206 289 --LDIARQVFESMPK-----RDL-TSW----NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356 (614)
Q Consensus 289 --~~~A~~~~~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~ 356 (614)
.+.|+.-++.+.. |.. ..| -=.+-++...|+..++++.|+.| +..+.+....+-..+.++|...+.+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l-~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM-EAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 2334443443321 321 122 23456788899999999999999 8888765556888899999999999
Q ss_pred HHHHHHHHHHHHhcC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC----------------CCCHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYN----ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM----------------KPDAVIWRSLLD 416 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~p~~~~~~~ll~ 416 (614)
++|..++..+....+ ..++......|.-+|...+++++|..+++.+.- .||-..+..+..
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 999999999876432 233455567899999999999999999998721 134444444444
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+....|++.+|++.++++....|. |......+.+++...|...+|.+.++.....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 4338899999999999999999999 9999999999999999999999999776543
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.1e-11 Score=117.68 Aligned_cols=355 Identities=16% Similarity=0.185 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHH--ccCCcHHHH-HHHHHHHHhCCCCchhHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA--YLFAFSQGK-QAHAHIFKRGLVSDVYINN 174 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~ 174 (614)
+++=|.++....+ |....+.-+|+.|.+.|+. .+...-..+++..+ ...++--++ +-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmIS~--~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKMISS--REVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hcchhHHHHHHhh--cccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 4456666655544 6778888888888888866 66655555554432 222222221 2233333333 1122222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhH
Q 038206 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
|.|++.+ ++-+...++..+|..||.|.++--..+.|.++|++-... .+.+..+|+.+|.+.+-+ .
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 2344433 333333345567777777777777777777777777666 777777777777654332 2
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH----HHHhcCC----CCCHHHHHHHHHHHHhcCCHHH-HH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR----QVFESMP----KRDLTSWNSIILGFALHGRAEA-AL 324 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~----~~~~~m~----~~~~~~~~~li~~~~~~g~~~~-A~ 324 (614)
++.+...|... .+.||..|+|+++.+.++.|+++.|. +++.+|+ +|...+|..+|.-+++.++..+ |.
T Consensus 257 ~K~Lv~EMisq---km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 257 GKKLVAEMISQ---KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred cHHHHHHHHHh---hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 35666666666 67777777777777777777666543 3444444 5667777777777777666543 33
Q ss_pred HHHHHHh---hhcCC---Cc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC---CCCC---hhHHHHHHHHHHHcCC
Q 038206 325 KYFDRLV---VEESF---SP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYN---ITPV---LEHYGCLVDLLARAGN 391 (614)
Q Consensus 325 ~l~~~m~---~~~g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li~~~~~~g~ 391 (614)
.++.+++ .-... .| |...|...+..|.+..+.+.|.++...+....+ +.|+ ..-|..+.++.+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3333331 11112 22 235566667777777777777777665533111 2222 1234556666666666
Q ss_pred HHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc-------------------CCC-------
Q 038206 392 IDEALHLVSNM-P--MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-------------------GGI------- 442 (614)
Q Consensus 392 ~~~A~~~~~~m-~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~------- 442 (614)
++.-+..++.| | .-|+..+-..++.|. ...+.++..-+++..++..| +.|
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~-~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRAL-DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHH-hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 66667777666 2 225555555566655 55555555444444443322 122
Q ss_pred ----------------------------CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 443 ----------------------------CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 443 ----------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
.+...+...-.+.+.|+.++|.+++..+.+++-
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 233344556667899999999999998865543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.4e-11 Score=128.43 Aligned_cols=399 Identities=12% Similarity=0.101 Sum_probs=259.5
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCC------hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc
Q 038206 64 QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPN------SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
.| | .+.|.|.+.|-- |+++.+..+...+..-+ ..+|-.+-++|-.. |++++|...|.+..+.. ||.+
T Consensus 268 ~n-P-~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~~---~d~~ 341 (1018)
T KOG2002|consen 268 EN-P-VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKAD---NDNF 341 (1018)
T ss_pred CC-c-HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccC---CCCc
Confidence 56 7 889999997777 99999888877765422 34566788888888 99999999998888776 5654
Q ss_pred --hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHHHHHHHHhhcCCC---ChhHHHHH
Q 038206 137 --TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG----HLDLANKVFDNMLER---SLVSWNVM 207 (614)
Q Consensus 137 --t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~f~~m~~~---~~~~~~~l 207 (614)
.+..+.+.+...|+++.+...|+.+.+.. +.+..+...|-..|+..+ ..+.|..++....++ |...|-.+
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 44567788899999999999999998864 445666667777777664 456666666555333 33344444
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-----cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc-------H
Q 038206 208 IDAFVQFGEFDSALKLFRRMQIL-----FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL-------V 275 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~-----~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~ 275 (614)
...|-+..-+ .++..|...... ..+.....+.+.......|.++.|...+.........-..+|.. -
T Consensus 421 aql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 4433332222 223333333211 22333344444444444444444444444433321000111110 0
Q ss_pred --------------------------HHHHHHHHHhc-------CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC
Q 038206 276 --------------------------NNSLIDMYCKC-------GSLDIARQVFESMP---KRDLTSWNSIILGFALHGR 319 (614)
Q Consensus 276 --------------------------~~~li~~y~~~-------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~ 319 (614)
+-..|++|.+. +...+|...++... ..|+..|+.+-..|.....
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 11233444443 34455666665544 3456667666667777777
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc------------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038206 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNH------------RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387 (614)
Q Consensus 320 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (614)
+..|.+-|..........+|.++..+|-+.|.. .+..+.|+++|..+.+ .-+.|...-|.+.-.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 777777665552333344677777777665432 2346778888888765 44457888888999999
Q ss_pred HcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc-CCCCchhHHHHHHHHhhcCChhhHH
Q 038206 388 RAGNIDEALHLVSNMP--MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
..|++.+|..+|.+.. ..-+..+|-.+-..| ...|++..|.++|+...+.- +.-++.....|.+++.++|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~-~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCY-VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999873 123456788888888 99999999999999988764 3435677889999999999999999
Q ss_pred HHHHHHHhC
Q 038206 465 LVRKLMTDK 473 (614)
Q Consensus 465 ~~~~~m~~~ 473 (614)
+........
T Consensus 737 ~~ll~a~~~ 745 (1018)
T KOG2002|consen 737 EALLKARHL 745 (1018)
T ss_pred HHHHHHHHh
Confidence 998776554
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.5e-11 Score=117.30 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=156.0
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAAL 324 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 324 (614)
.|+++.+...+...... .-......||. .-.+-+.|++++|++.|-++. ..++.....+...|-...+..+|+
T Consensus 503 ngd~dka~~~ykeal~n---dasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNN---DASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred cCcHHHHHHHHHHHHcC---chHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 45666666666666654 22222223332 224566788888888887654 446666667777888888888999
Q ss_pred HHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038206 325 KYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM- 402 (614)
Q Consensus 325 ~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 402 (614)
+++.+. ..+.| |.....-|...|-+.|+-.+|.+.+-.--+ -++.+..+...|..-|....-+++|+.+|++.
T Consensus 579 e~~~q~---~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 579 ELLMQA---NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHh---cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 988644 44445 456777788889999999999888765422 45558889999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 403 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
-++|+..-|..|+..|.++.|++.+|.++++......|. |......|.+.+...|.
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 578999999999999989999999999999999999999 99999999999887774
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.5e-09 Score=113.68 Aligned_cols=385 Identities=12% Similarity=0.068 Sum_probs=262.7
Q ss_pred ChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHccCCcHHHHHH
Q 038206 82 DLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 82 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
.+..+..++...-. .|++..|.|-+-|... |+++.+..+...+....... .-...|--+.+++-..|+++.|.++
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK-~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFK-KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc-ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34455555544322 5677777777777777 99999999988887654110 1123577788889999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcC----ChhHHHHHHHHhhhc
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFG----EFDSALKLFRRMQIL 230 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~ 230 (614)
|.+..+..-..-+..+--|..+|.+.|+++.+...|+.+.+ | +..+--.|...|+..+ ..+.|..++.+....
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 98887754222233455688899999999999999998843 3 3455566666676664 346666666666554
Q ss_pred cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH-hccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C
Q 038206 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-------R 302 (614)
Q Consensus 231 ~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~ 302 (614)
.+.|...|..+-..+....-+.. ..++..+.. ....+-.+.+.+.|.+...+...|+++.|...|+.... +
T Consensus 410 ~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 55566677666666554443333 555555442 22225567788999999999999999999999986642 2
Q ss_pred CH------H-HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 038206 303 DL------T-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374 (614)
Q Consensus 303 ~~------~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 374 (614)
|. . -|| +...+-..++.+.|.+.|..+ .. -.|.-+ .|.-+.......+...+|...+..... ....
T Consensus 489 de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~I-lk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~ 562 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSI-LK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSS 562 (1018)
T ss_pred cccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHH-HH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccC
Confidence 22 1 233 344455567888999999888 33 245443 333333222345778888888888876 4445
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH-----------hcCchHHHHHHHHHHHHhc
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPDAVIWRSLLDACCK-----------KHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~-----------~~~~~~~a~~~~~~~~~~~ 439 (614)
++..++.+.+.+.+...+..|.+-|..+ ...+|..+.-+|-+.|.. ..+..+.|+++|.+++...
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 5556666777888877777777744443 334677777777665521 2245778899999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
|. |...-+.+.-+++..|++.+|..+|...++...
T Consensus 643 pk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 643 PK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 88 877778888889999999999999999888755
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=7.8e-13 Score=128.85 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=108.5
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a 349 (614)
++..+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.+++++.......+++...|..+...
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 44556666666 68889999988887664 3466778888888999999999999999873223345566777778888
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcCchH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNMP--MKPDAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~ 426 (614)
+.+.|+.++|...++...+. .| +....+.++..+...|+.+++.++++... ...|...|..+..++ ...|+.+
T Consensus 156 ~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~-~~lg~~~ 231 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY-LQLGRYE 231 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH-HHHT-HH
T ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh-ccccccc
Confidence 89999999999999999763 45 57788889999999999999887776651 124556788888888 8999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.|...+++..+..|. |+.....+.+++...|+.++|.+++++..
T Consensus 232 ~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 232 EALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 999999999999999 99999999999999999999999987653
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=2.2e-10 Score=116.89 Aligned_cols=283 Identities=12% Similarity=0.045 Sum_probs=186.2
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHT-FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY--INNSLIHFYASCGHLDLA 189 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A 189 (614)
|++++|.+......+.. +++.. |.....+....|+.+.+.+.+.++.+. .|+.. ........+...|+.+.|
T Consensus 98 Gd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 78888876666554432 12222 222233446778888888888887764 34432 222345677788888888
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhcc
Q 038206 190 NKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266 (614)
Q Consensus 190 ~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 266 (614)
...++...+ | +......+...|.+.|++++|.+++..+.+....+......+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~------------------------ 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH------------------------
Confidence 888887743 2 4566777888888888888888888888765111111111000
Q ss_pred CCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 267 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
..+|..++....+..+.+...++++.++ ..++.....+...+...|+.++|.+++++. .+ ..||...
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~-l~--~~~~~~l- 298 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG-LK--RQYDERL- 298 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCCHHH-
Confidence 0122223333333445566666676665 246777788888888888888888888876 44 3444421
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhc
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKH 422 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~ 422 (614)
.++.+....++.+++.+..+...++ .+-|.....++...+.+.|++++|.+.|+.. ...|+..++..|...+ ...
T Consensus 299 -~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~-~~~ 374 (398)
T PRK10747 299 -VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL-DRL 374 (398)
T ss_pred -HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHc
Confidence 1333444568888888888888653 3345666778888888889999999888887 6678888888888888 888
Q ss_pred CchHHHHHHHHHHHHh
Q 038206 423 ASVVLSEEVAKQVIES 438 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~ 438 (614)
|+.++|.+++++.+..
T Consensus 375 g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 HKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 8889998888887664
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=9.8e-09 Score=99.19 Aligned_cols=413 Identities=11% Similarity=0.103 Sum_probs=302.9
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
+++..|+.+|++... ++...|-.-+..=.++ .....|..++++....-.. .|..-| -.+-.=-..|++..|+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lPR-VdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILPR-VDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcch-HHHHHH-HHHHHHHHhcccHHHHHH
Confidence 788899999998765 6777788788888888 8999999999998876522 343322 233333456999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhcc---C
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF---E 232 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~ 232 (614)
|+.-.. .+|+...|++.|+.=.+-..++.|..+++.. ..|++.+|--...-=.++|+...|..+|......+ .
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 998765 6899999999999999999999999999986 67899999999988889999999999999887652 2
Q ss_pred CChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc--ccHHHHHHHHHHhcCCHHHHHHHH---hcCC-----C-
Q 038206 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVF---ESMP-----K- 301 (614)
Q Consensus 233 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~---~~m~-----~- 301 (614)
-+...|++...-=.+....+.+.-++...+.. ++.+ ...|..+...=-+-|+....+++. .++. +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 22333444444445667788899999999885 4433 456666666666667755444332 2222 2
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-------HHHHHHHHHH---hccCCHHHHHHHHHHHHHh
Q 038206 302 --RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-------ITFVGVLSAC---NHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 302 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 369 (614)
-|-.+|--.+..-...|+.+...++|++. -.+++|-. ..|.-+=.+| ....+++.+.++++..++
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErA--Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERA--IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHH--HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 26678887777777889999999999987 34566633 2222222222 357889999999999875
Q ss_pred cCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 370 YNITPVLEHYGCLVDLLA----RAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
-++-...|+.-+--+|+ ++.++..|.+++... +.-|-..++...|..- .+.+++++...++++.++-+|. |.
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE-lqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE-LQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH-HHHhhHHHHHHHHHHHHhcChH-hh
Confidence 44445666666655554 678999999998776 7789999999999887 8889999999999999999999 89
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHH
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (614)
.+|.-....-...|+++.|..+|+...+....--|..-| ++.+ .=....+..+.+-.+++.+++
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw---kaYI----dFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW---KAYI----DFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---HHhh----hhhhhcchHHHHHHHHHHHHH
Confidence 999988888889999999999999887765433333222 2221 111124555566665555555
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.37 E-value=2e-09 Score=111.87 Aligned_cols=314 Identities=14% Similarity=0.118 Sum_probs=187.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+--. ...|..-|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 223444555555555555555555444322 22344455555555555555555555555
Q ss_pred HhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc----HHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 226 RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL----VNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 226 ~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
+..+.-+++...+---...|-+.|+...|..-+.++.+. .-+.|.. ..-..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 554443444333333444445555555555555555543 1111111 111234444555555666655554432
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc---------------------------CCCccHHHHHHHHHH
Q 038206 302 -----RDLTSWNSIILGFALHGRAEAALKYFDRLVVEE---------------------------SFSPNSITFVGVLSA 349 (614)
Q Consensus 302 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---------------------------g~~p~~~t~~~ll~a 349 (614)
-+...++.++..|.+...++.|......+ ... ++.++...+ -+.-+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 12344556666666666666666666555 331 122222221 12222
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHhcCc
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNMPMK---PDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~~~~~ 424 (614)
..+....+....+...... ..+.| +...|.-+.++|...|++.+|+++|..+.-. -+...|.-+-..+ ...|.
T Consensus 387 L~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~-~~l~e 464 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY-MELGE 464 (895)
T ss_pred hhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH-HHHhh
Confidence 3344444444444444433 35334 5778999999999999999999999988322 3577899888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.++|.+.|+.++...|. +...-..|...|.+.|+.++|.+++..|.
T Consensus 465 ~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999 89999999999999999999999998876
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=3.8e-10 Score=115.81 Aligned_cols=289 Identities=11% Similarity=0.037 Sum_probs=182.7
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHT-FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
|+++.|.+.+.+..+.. |+... +-....+....|+.+.+.+.+....+....+...+.-.....+...|+.+.|..
T Consensus 98 g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888887776654 54332 333345566778888888888887765433333344445777778888888888
Q ss_pred HHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 192 VFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 192 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
.++.+.+ | +...+..+...+.+.|++++|.+++....+...++...+..+-.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~------------------------- 229 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ------------------------- 229 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-------------------------
Confidence 8888743 3 55577788888888888888888888887651122221111000
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH--
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF-- 343 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~-- 343 (614)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+++++. .+ ..||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~-l~--~~pd~~~~~~ 301 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG-LK--KLGDDRAISL 301 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH-Hh--hCCCcccchh
Confidence 0111111111222234455555555553 36777777778888888888888888876 33 23444321
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHH
Q 038206 344 -VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN---MPMKPDAVIWRSLLDACC 419 (614)
Q Consensus 344 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~~~ 419 (614)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll- 380 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF- 380 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH-
Confidence 1111222345777778888877765433333225566788888888888888888883 25578888888787777
Q ss_pred HhcCchHHHHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~ 438 (614)
.+.|+.++|.+++++....
T Consensus 381 ~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877543
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=3.8e-09 Score=107.88 Aligned_cols=274 Identities=11% Similarity=0.058 Sum_probs=181.8
Q ss_pred cCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHH--HHHHHHHhhCchhHHHHH
Q 038206 183 CGHLDLANKVFDNMLER--S-LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQ--SITSACAGLATLSLGMWA 257 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~--~ll~a~~~~~~~~~~~~~ 257 (614)
.|+++.|.+.+....+. + ...|-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555544332 1 122222223335556666666666665442 33332222 223344555666666666
Q ss_pred HHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CH--------HHHHHHHHHHHhcCCHHHHHHH
Q 038206 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DL--------TSWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~--------~~~~~li~~~~~~g~~~~A~~l 326 (614)
++.+.+. -+.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++
T Consensus 176 l~~~~~~----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 176 VDKLLEV----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666553 3445677888888888889999998888877632 11 2444445545555667777777
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038206 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK 405 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 405 (614)
++.. .. ..+.+......+..++...|+.++|..+++...+ .+|+... .++.+....++.+++.+..+.. +..
T Consensus 252 w~~l-p~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 252 WKNQ-SR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHhC-CH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 7776 22 2344667778888999999999999999998865 3455532 2333334569999999999877 445
Q ss_pred CCHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 406 PDAVI-WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 406 p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|+... ...+-..| ...+++++|.+.|+.+.+..|+ ..+|..|..++.+.|+.++|.+.+++-.
T Consensus 325 P~~~~l~l~lgrl~-~~~~~~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLL-MKHGEWQEASLAFRAALKQRPD--AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76554 55555666 9999999999999999998766 6778899999999999999999998653
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=4.7e-09 Score=107.83 Aligned_cols=280 Identities=10% Similarity=0.025 Sum_probs=165.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh--hHHHHHHHHHHhcCChhHHH
Q 038206 147 YLFAFSQGKQAHAHIFKRGLVSDVY-INNSLIHFYASCGHLDLANKVFDNMLE--RSL--VSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~ 221 (614)
..|+++.|++.+....+.. |++. .+-....++.+.|+.+.|.+.|.+..+ |+. ...-+....+.+.|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3466666666665554432 2222 222334455556666666666665421 221 22223355555566666666
Q ss_pred HHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 222 KLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 222 ~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
..++.+.+. -+-+..+...+...|...|++++|.+.+..+.+
T Consensus 174 ~~l~~l~~~--------------------------------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 174 HGVDKLLEM--------------------------------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHh--------------------------------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666665543 223444556666666666666666666665552
Q ss_pred C---CHHHHH----HHHHHHHhcCCHHHHHHHHHHHhhhcC---CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 302 R---DLTSWN----SIILGFALHGRAEAALKYFDRLVVEES---FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 302 ~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
. +...+. ....++...+..+++.+.+..+ .... .+.+...+..+...+...|+.++|.++++...++
T Consensus 216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~-~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-- 292 (409)
T TIGR00540 216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW-WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-- 292 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--
Confidence 2 222221 1111112223333333444444 2211 1236677788888999999999999999999764
Q ss_pred CCCChhH-HHHHHHHH--HHcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 372 ITPVLEH-YGCLVDLL--ARAGNIDEALHLVSNM-PMKPDA---VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 372 ~~p~~~~-~~~li~~~--~~~g~~~~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
.|+... ...++..+ ...++.+.+.+.++.. ...|+. ....++-..+ .+.|++++|.+.|+........|+.
T Consensus 293 -~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~-~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 293 -LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL-MKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred -CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-HHcccHHHHHHHHHHhHHhhcCCCH
Confidence 233221 11123333 3357788888888765 334544 4455666677 8999999999999965554445567
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
..+..+...+.+.|+.++|.+++++-.
T Consensus 371 ~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 371 NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778899999999999999999998753
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=9.2e-08 Score=96.14 Aligned_cols=457 Identities=9% Similarity=0.034 Sum_probs=329.8
Q ss_pred hhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHH--HHH-hccCcchHHHHH----HHHHHhCCCCCCchHHHHHHHHH
Q 038206 4 AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLS--SLT-ECKSMSQLKQIH----AQALRTALPQQHKTLLIYSRIIH 76 (614)
Q Consensus 4 ~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~--~l~-~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~li~ 76 (614)
||++-.-++. |-.+++..++. ++-+...+.+ .|. +-+....+..|. ..+...|.. -+ . .-|-.=..
T Consensus 415 AlarLetYen---AkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~-i~-r-dqWl~eAe 487 (913)
T KOG0495|consen 415 ALARLETYEN---AKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE-IN-R-DQWLKEAE 487 (913)
T ss_pred HHHHHHHHHH---HHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee-ec-H-HHHHHHHH
Confidence 5555566665 44677776654 4444444443 222 222222222222 223344554 44 3 33433334
Q ss_pred HHhc-CChhHHHHHHhcCCC------CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC
Q 038206 77 FASF-ADLDYAFRVFYQIEN------PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 149 (614)
.+-. |..--+..+...... .--.+|+.--..|.+. +.++-|..+|...++... -+...|......=-..|
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~-~~~~carAVya~alqvfp--~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR-PAIECARAVYAHALQVFP--CKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc-chHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHhcC
Confidence 4444 555555544443321 2345788888888888 888889999988887651 24556777666666778
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRR 226 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (614)
..+.-..+++.++..- +.....|-....-+...||+..|+.++++..+ | +...|-+-+..-..+..+++|..+|.+
T Consensus 565 t~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred cHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888888998888764 34556677777778888999999998887733 2 556788888888999999999999988
Q ss_pred hhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C
Q 038206 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-D 303 (614)
Q Consensus 227 m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~ 303 (614)
.... .|+...|.--++.---++..+++.++.+..++. ++.-...|-.+...+-..++++.|...|..-.+ | .
T Consensus 644 ar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 644 ARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKS----FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred Hhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 8764 666666665555556678889999999888885 555567888888899999999999998876553 3 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 383 (614)
+..|-.+..-=-+.|..-+|..+|++- +.. -+-|...|...|..-.+.|+.++|..+.....+ ..+.+...|..-|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildra-rlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRA-RLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHH-Hhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHH
Confidence 567888877777888999999999987 433 344668889999999999999999999999887 5667788888889
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH
Q 038206 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 463 (614)
.+..+.++-....+.+++-. -|..+..++-..+ ....+++.|.+.|.+....+|+ +..+|.-+...+.+.|.-++-
T Consensus 795 ~le~~~~rkTks~DALkkce--~dphVllaia~lf-w~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF-WSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred HhccCcccchHHHHHHHhcc--CCchhHHHHHHHH-HHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHH
Confidence 88888888777777776654 4555556666666 7778899999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCCccEEEE
Q 038206 464 GLVRKLMTDKGVTKEPGCSSIEI 486 (614)
Q Consensus 464 ~~~~~~m~~~g~~~~~~~~~~~~ 486 (614)
.+++++... ..|..|..|..+
T Consensus 871 kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 871 KEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHhc--cCCCCCcHHHHH
Confidence 999988765 345556666433
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.9e-10 Score=113.59 Aligned_cols=273 Identities=13% Similarity=0.089 Sum_probs=204.9
Q ss_pred CHHHHHHHHhhcCCC--Ch-hHHHHHHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHH
Q 038206 185 HLDLANKVFDNMLER--SL-VSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
+..+|...|...+.. |+ .....+..+|...+++++|.++|+..++. ..-+...|+++|--.-+ .++...-..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hHHHHHHHH
Confidence 367888888886442 33 34455778899999999999999999876 44466777777753321 111111111
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
+ +.+ --+..+.+|.++.++|.-.++.+.|.+.|++..+- ...+|+.+-.-+.....+|+|...|+.. .+
T Consensus 412 ~-Li~----~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A---l~ 483 (638)
T KOG1126|consen 412 D-LID----TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA---LG 483 (638)
T ss_pred H-HHh----hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh---hc
Confidence 1 222 23445789999999999999999999999988743 5678888877888899999999999865 33
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIW 411 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 411 (614)
+.|.. ..|-.+-..|.+.++++.|.-.|+... .+.| +.+....+...+-+.|+.++|++++++. ...| |...-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 44443 344456667899999999999999885 5666 5667777888999999999999999987 3333 33333
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 412 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
---...+ ...++.++|++.++++++.-|+ +...|..+...|-+.|+.+.|..-|.-+.+
T Consensus 561 ~~~~~il-~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 561 YHRASIL-FSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHH-HhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 3333344 5568999999999999999999 999999999999999999999988876554
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=7.5e-12 Score=121.93 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=8.8
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCChhHHHHH
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKL 223 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~ 223 (614)
...++.+.|.+.++.+.+.+.. ++..+..++.. ...++.++|.++++..-+ ++...+..++..+.+.++++++.++
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 3444455555555554443321 33334444444 344455555444443311 2333444444444455555555555
Q ss_pred HHHhh
Q 038206 224 FRRMQ 228 (614)
Q Consensus 224 ~~~m~ 228 (614)
++...
T Consensus 133 l~~~~ 137 (280)
T PF13429_consen 133 LEKLE 137 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.30 E-value=1.1e-07 Score=95.73 Aligned_cols=373 Identities=10% Similarity=0.016 Sum_probs=286.0
Q ss_pred ChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHH
Q 038206 82 DLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158 (614)
Q Consensus 82 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 158 (614)
+.++|+-++.+..+ | +.. |.-+|++- ..++.|..+++..++.- + .+...|.+....=-..|+.+...++.
T Consensus 391 ~~~darilL~rAveccp~s~d----LwlAlarL-etYenAkkvLNkaRe~i-p-td~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMD----LWLALARL-ETYENAKKVLNKAREII-P-TDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ChHHHHHHHHHHHHhccchHH----HHHHHHHH-HHHHHHHHHHHHHHhhC-C-CChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 44556666655444 2 222 33355565 67778888888777653 3 46667777666666777777777776
Q ss_pred HH----HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-ChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 159 AH----IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-----R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 159 ~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+. +...|+..+..-|-.=...+-+.|.+-.+..+...... . --.||+.-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 54 34467777777777777777777777777777666521 1 24589999999999999999999999888
Q ss_pred hccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHH
Q 038206 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLT 305 (614)
Q Consensus 229 ~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~ 305 (614)
+-.+-+...|......--..|..+....+++.+... .+-....|-....-+-+.|++..|..++...-+ .+..
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 766777777877777777888999999999998875 445566777777888889999999999887653 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
.|-+-+.--..+.+++.|..+|.+. .. ..|+...|.--+..---.++.++|.+++++..+ .++--...|-.+...
T Consensus 620 iwlaavKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHH
Confidence 8888888889999999999999976 43 667777776666666667999999999999987 344446778888999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH
Q 038206 386 LARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 463 (614)
+-+.++++.|.+.|..- ..-|+ ...|-.|...- .+.|++-+|..++++..-.+|+ +...|...+++-.+.|..+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 99999999999988765 44465 55777776665 8888999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHh
Q 038206 464 GLVRKLMTD 472 (614)
Q Consensus 464 ~~~~~~m~~ 472 (614)
..+..+..+
T Consensus 773 ~~lmakALQ 781 (913)
T KOG0495|consen 773 ELLMAKALQ 781 (913)
T ss_pred HHHHHHHHH
Confidence 988766544
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=7.9e-12 Score=85.63 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~ 352 (614)
||+++||++|.+|++.|++++|.++|++| .+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999 899999999999999999875
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=3.5e-08 Score=102.88 Aligned_cols=315 Identities=14% Similarity=0.110 Sum_probs=167.7
Q ss_pred cCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 80 FADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 80 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
+|++++|.+++.++.. .+...|.+|-..|-+. |+.++++..+--.-... + -|...|..+-....+.|.+++|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr-Gd~eK~l~~~llAAHL~-p-~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR-GDIEKALNFWLLAAHLN-P-KDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc-ccHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHhcccHHHHHH
Confidence 3777777777766654 3455677777677666 77777666554333332 1 345566666666677777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----h----HHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL----V----SWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+|..+++.. +++....---..+|-+.|+...|..-|.++.+.+. . .--.++..|...++-+.|++.+....
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777655 33333333345566667777777666666533221 1 11123344555555566666665554
Q ss_pred hc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh------------------------ccCCCCccccH-HHHHHH
Q 038206 229 IL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH------------------------CDHSLVTDVLV-NNSLID 281 (614)
Q Consensus 229 ~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~------------------------~~~g~~~~~~~-~~~li~ 281 (614)
.. -..+..+++.++..+......+.+.......... ..++++++..+ ...+--
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 42 2233333444444444444444444433333220 01123333333 111111
Q ss_pred HHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 282 MYCKCGSLDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 282 ~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
...+.+...+++.-|-... .-++..|.-+..+|.+.|++.+|+.+|..+ ......-+...|..+..+|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI-TNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCccccchhhhHHHHHHHHHHhhHH
Confidence 2223334444433332211 123445666666777777777777777766 44333334556666666666677777
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 358 EGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
+|.+.|+.... ..| +...--.|...|-+.|+.++|.+.+..+
T Consensus 467 ~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 467 EAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 77777776654 223 3344445666666777777777776665
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=2e-10 Score=118.49 Aligned_cols=262 Identities=13% Similarity=0.154 Sum_probs=190.1
Q ss_pred HHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 223 ~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
++-.|+.. +.||.+||.++|.-|+..|+.+.|- ++..|.-. .++.+..+++.++.+....++.+.+. +
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k---sLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK---SLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc---cccccchhHHHHHhcccccccccCCC-------C
Confidence 45556666 8888888888888888888888888 88877776 78888899999999999999887775 7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
|...+|+.|..+|.++||... |+.. +. -...+...++..|....-..++..+.-..+.-||...
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~v-eq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVV-EQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHH-HH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 888999999999999999866 4443 22 2233555666777766666666654333355566544
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChh
Q 038206 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (614)
.+....-.|.++.++++...+|...-..+.-.++.-+......++.-..+.+...+ .|++.+|..++..-..+|+.+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchh
Confidence 56667778889999999998874321112222366552333445544444444444 557999999999999999999
Q ss_pred hHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcc
Q 038206 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529 (614)
Q Consensus 462 ~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~ 529 (614)
.|..++.+|+++|+...+...|.++-+ .+....++.+.+-|++.|+-|+..+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchh
Confidence 999999999999999999988975543 12223345577889999999997663
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=4.4e-07 Score=88.08 Aligned_cols=355 Identities=12% Similarity=0.136 Sum_probs=216.5
Q ss_pred chHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHH
Q 038206 47 SQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQ 123 (614)
Q Consensus 47 ~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~ 123 (614)
..++.++++.+..-.. .| .+|-.-+.|=-. |++..|+++|++... |+...|++.|.-=.+. +..+.|..+|+
T Consensus 124 NhARNv~dRAvt~lPR-Vd---qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-keieraR~IYe 198 (677)
T KOG1915|consen 124 NHARNVWDRAVTILPR-VD---QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-KEIERARSIYE 198 (677)
T ss_pred hHHHHHHHHHHHhcch-HH---HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3447777777765433 34 556566655555 999999999988654 9999999999998888 99999999999
Q ss_pred HHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh-CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhc----C
Q 038206 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-GL-VSDVYINNSLIHFYASCGHLDLANKVFDNM----L 197 (614)
Q Consensus 124 ~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~ 197 (614)
...-.. |+..+|..-.+-=.+.|....++++++.+++. |- ..+...+.+....=.++..++.|.-+|.-. +
T Consensus 199 rfV~~H---P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 199 RFVLVH---PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHheec---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998765 89999988888878889999999999988763 21 112234444444445566677777666322 2
Q ss_pred CC-------------------------------------------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC
Q 038206 198 ER-------------------------------------------SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234 (614)
Q Consensus 198 ~~-------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd 234 (614)
+. |-.+|-..+..--..|+.+...++|++...+++|-
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 11 23344445555555566666666666666554442
Q ss_pred h-------hhHHHHHHHH---HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHH----hcCCHHHHHHHHhcCC
Q 038206 235 G-------YTFQSITSAC---AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC----KCGSLDIARQVFESMP 300 (614)
Q Consensus 235 ~-------~t~~~ll~a~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~m~ 300 (614)
. ..|.-+=-+| ....+.+..+++++..++. ++...+|+.-+=-+|+ ++.++..|.+++-...
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l----IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL----IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 1 1111111111 2445666666666666653 4444555554444443 4566666666665543
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 038206 301 --KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378 (614)
Q Consensus 301 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 378 (614)
-|-..++..-|..=.+.+++|.+..++++. .+-+ +-|..++......-...|+.+.|..+|+..+....+..-...
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkf-le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKF-LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH-HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 344555555555555666666666666665 3321 223355555555555666667777777666554333333445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLL 415 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 415 (614)
|-+.|+.=..+|.++.|..+++++ ...+...+|-++.
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 556666666666677776666665 2234444555543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.7e-08 Score=93.43 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=178.7
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcC
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFG 215 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g 215 (614)
..++......+++.+-.+.....|++.+...-+-...+.-...|++.|+.+|+++.+. |..+|..++- +++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3455556677777777777888887777766666666666778888888888888554 4456655543 3322
Q ss_pred ChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHH
Q 038206 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294 (614)
Q Consensus 216 ~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 294 (614)
+ ..+..+.+-... -+--+.|...+.+-++-.++.+.|...|+..++. -+.....|+.+.+-|....+...|.+
T Consensus 312 ~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHH
Confidence 2 222333322222 2333456667777777777777777777777764 22335677777777777777777777
Q ss_pred HHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 038206 295 VFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370 (614)
Q Consensus 295 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 370 (614)
-++... .+|-..|-.|-++|...+...=|+-.|++. .. .+| |...+.+|-.+|.+.+++++|+.-|.....
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA-~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-- 460 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA-LE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-- 460 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH-Hh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--
Confidence 777554 456677777778887777777777777765 22 444 446777777777777888888777777764
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------P-MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
.-..+...+..|.+.|-+.++.++|...|++- + +.|...--...+.-+..+.+++++|........
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 22335566777777777777777777766543 1 223232222333333356666666655544443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.4e-08 Score=97.08 Aligned_cols=350 Identities=13% Similarity=0.094 Sum_probs=231.1
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 038206 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD-VYINNSLIHFY 180 (614)
Q Consensus 103 ~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 180 (614)
..-+-|.++ |.+++|+..|.+.+... || +..|...-.+|...|+++.+.+--...++. .|+ +..+..-..++
T Consensus 120 ~~GN~~f~~-kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 120 TKGNKFFRN-KKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred hhhhhhhhc-ccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344556777 88999999999988876 77 666777777778888888887766665543 333 22344444555
Q ss_pred HhcCCHHHHHH----------------------HHhh---------cCC-C-ChhHHHHHHHHHHh--------------
Q 038206 181 ASCGHLDLANK----------------------VFDN---------MLE-R-SLVSWNVMIDAFVQ-------------- 213 (614)
Q Consensus 181 ~~~g~~~~A~~----------------------~f~~---------m~~-~-~~~~~~~li~~~~~-------------- 213 (614)
-..|++++|+. +++. +.+ + -+..-++.|..|..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 55566655442 2111 110 0 01111111111111
Q ss_pred ---------------cC---ChhHHHHHHHHhhhc--cCCChh---------hHHHHHHH--HHhhCchhHHHHHHHHHH
Q 038206 214 ---------------FG---EFDSALKLFRRMQIL--FEPDGY---------TFQSITSA--CAGLATLSLGMWAHAYIL 262 (614)
Q Consensus 214 ---------------~g---~~~~A~~~~~~m~~~--~~pd~~---------t~~~ll~a--~~~~~~~~~~~~~~~~~~ 262 (614)
.+ .+.+|...+.+-... ..++.. .-..++.+ ..-.|+.-.+.+-+..++
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 11 122222222221111 222222 11111111 233567777778888888
Q ss_pred HhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc
Q 038206 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339 (614)
Q Consensus 263 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~ 339 (614)
+. .+.+...|--+..+|....+.++-.+.|++.. ..|..+|..-...+.-.+++++|..=|++. .. +.|+
T Consensus 354 ~l----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Ka-i~--L~pe 426 (606)
T KOG0547|consen 354 KL----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKA-IS--LDPE 426 (606)
T ss_pred hc----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH-hh--cChh
Confidence 75 22233347777788999999999999998776 235666766666666778899999999876 33 5665
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------H
Q 038206 340 S-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD---------A 408 (614)
Q Consensus 340 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~ 408 (614)
. ..|.-+-.+..+.+.++++...|++.++ .++..+.+|+.....+...++++.|.+.|+.. ..+|+ .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 4 6676676677789999999999999976 66777889999999999999999999999875 33333 2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
.+-.+++-. .-.+++.+|.++++++.+.+|. ....|..|..+-...|+.++|.++|++-
T Consensus 505 lV~Ka~l~~--qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALLVL--QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhhHhhh--chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233333332 3348999999999999999999 8899999999999999999999999874
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.8e-09 Score=108.85 Aligned_cols=275 Identities=11% Similarity=0.069 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChhHHHHHH
Q 038206 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFGEFDSALKLF 224 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 224 (614)
..+|...|..+... ...+..+..-+-.+|...++.++|.++|+.+.+. +...|.+.+.-+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 34455555552222 2223344455555555555555555555555221 34455554443321 1222222
Q ss_pred HHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038206 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302 (614)
Q Consensus 225 ~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 302 (614)
.+-.-. .+-.+.||.++-+.++-.++.+.|.+.|+..++ +.| ..++|+.+..-+....++|.|...|+.....
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222212 233345555555555555666666665555554 344 5677888888888888899999999988766
Q ss_pred CHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Chh
Q 038206 303 DLTSWN---SIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLE 377 (614)
Q Consensus 303 ~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 377 (614)
|+..|| -|...|.+.++.+.|+-.|++. . .+.|.. +....+...+-+.|+.++|+++++.... +.| |+-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l 558 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA-V--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPL 558 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhh-h--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCch
Confidence 665544 4567788999999999999865 3 356654 5555566667788999999999998863 333 444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
.---.+..+...+++++|+..++++ .+.|+. ..+..+...| .+.|+.+.|+.-|..+.+++|+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~-k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY-KRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH-HHHccchHHHHhhHHHhcCCCcc
Confidence 4344566677889999999999998 445654 4555666666 99999999999999999998883
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.7e-11 Score=84.00 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=43.8
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
||+++||++|++|++. |++++|.++|++|.+.|+. ||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~-~~~~~a~~l~~~M~~~g~~-P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKA-GKFEEALKLFKEMKKRGIK-PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcC
Confidence 7888899999999998 8899999999999988888 898999988888864
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.3e-08 Score=95.94 Aligned_cols=253 Identities=11% Similarity=0.046 Sum_probs=164.3
Q ss_pred HHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 210 AFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
-|.++|+++.|+++++-..+. ...-..+-.+++...-.-.++..+.+.-...+... .-+....+.-.+.....
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d----ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID----RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc----ccCHHHhhcCCceeeec
Confidence 467778888887777766544 11111112222322223334445544444433220 00111111111223446
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 038206 287 GSLDIARQVFESMPKRDLTSWNSIIL---GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363 (614)
Q Consensus 287 g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 363 (614)
|++++|.+.|++....|...-.+|.. .+-..|+.++|++.|-++ .. -+.-+......+.+.|-...+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl-h~-il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL-HA-ILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH-HH-HHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999988777665444432 356789999999999866 22 13334466667778888889999999998
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..... -++.|+...+.|.+.|-+.|+-..|.+.+-+- ..-| |..+..-|-.-| ....-.+.++..|++..-..|
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy-idtqf~ekai~y~ekaaliqp- 657 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY-IDTQFSEKAINYFEKAALIQP- 657 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH-HhhHHHHHHHHHHHHHHhcCc-
Confidence 77742 55568999999999999999999998865443 3333 555555555555 777778999999998766554
Q ss_pred CCchhHHHHHHH-HhhcCChhhHHHHHHHHHhC
Q 038206 442 ICSGVYVLLSRV-YASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 442 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 473 (614)
+..-|..++.. +.+.|+++.|..+++....+
T Consensus 658 -~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 -NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 47778776655 56789999999999887653
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.2e-07 Score=90.38 Aligned_cols=288 Identities=12% Similarity=0.093 Sum_probs=204.0
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (614)
|++.+|..+..+-.+.+.. ....|..-..+.-..||.+.+-+++.++.+.--.++..++-+........|+.+.|..-
T Consensus 98 G~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 8999999998887776633 23345556667778899999999999888764466777778888888888998888877
Q ss_pred Hhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 193 FDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 193 f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
.++. ..++.........+|.+.|++.+...++.+|.+. .--|+ +..++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-----------------e~~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-----------------EAARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-----------------HHHHH-----------
Confidence 7665 4457778888899999999999999999998766 21111 11111
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 345 (614)
...+|+.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+- .+.+..|+. .
T Consensus 228 ---e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~-Lk~~~D~~L----~ 299 (400)
T COG3071 228 ---EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA-LKRQWDPRL----C 299 (400)
T ss_pred ---HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH-HHhccChhH----H
Confidence 12245556665555555555556677666 235666667777788888888888888877 666666662 2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCc
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~ 424 (614)
.+-.+.+.++.+.-.+..+.-.+..+..| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+-+-.++ .+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~-~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL-DQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH-HHcCC
Confidence 23346667777776666666666555555 55667888888888888888888765 6678888888888888 88888
Q ss_pred hHHHHHHHHHHHHhcCC
Q 038206 425 VVLSEEVAKQVIESEGG 441 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~ 441 (614)
.+.|.+..++.+-.-..
T Consensus 377 ~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 377 PEEAEQVRREALLLTRQ 393 (400)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 88888888877654433
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=4e-09 Score=109.20 Aligned_cols=255 Identities=11% Similarity=0.063 Sum_probs=150.8
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 038206 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199 (614)
Q Consensus 120 ~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 199 (614)
.++-.+...|+. ||.+||.++|..|+..|+.+.|- +|..|.-..++.+..+++.++....+.++.+.+. +|
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 345566667777 77777777777777777777777 7777776666667777777777777777766554 55
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHH-hhh---ccCCC-----hhhHHHHHHHHHhh-------CchhHHHHHHHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRR-MQI---LFEPD-----GYTFQSITSACAGL-------ATLSLGMWAHAYILR 263 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~---~~~pd-----~~t~~~ll~a~~~~-------~~~~~~~~~~~~~~~ 263 (614)
...+|+.|..+|.+.|+... ++..++ |.. ...|. ..-|-..++.|-.. -....-+.++....+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777544 222222 211 11110 00111111111000 000111122222222
Q ss_pred hccCCC-CccccHHHH---HHHHHHh-cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCC
Q 038206 264 HCDHSL-VTDVLVNNS---LIDMYCK-CGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337 (614)
Q Consensus 264 ~~~~g~-~~~~~~~~~---li~~y~~-~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 337 (614)
. +. .|...-++. .++-... ...+++-...-.... .++..+|.+.+..-.-+|+.+.|..++.+| ++.|+.
T Consensus 161 l---l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfp 236 (1088)
T KOG4318|consen 161 L---LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFP 236 (1088)
T ss_pred H---HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCC
Confidence 2 10 111110110 0111111 112222222222222 478889999999989999999999999999 999999
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 038206 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392 (614)
Q Consensus 338 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (614)
.+..-|..|+-+ .++..-+..+...|.+ .|+.|+..|+.-.+-.+...|..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchhh
Confidence 999888888855 7777788888888865 69999999998877777665553
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=6e-08 Score=89.58 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=170.0
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCc--hhHHHHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSD--VYINNSL 176 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l 176 (614)
.|-.=++.+.. .++++|.++|-+|.+.. + -+..+-.+|.+.+.+.|..+.|..+|..+.++- +..+ ....-.|
T Consensus 38 ~Yv~GlNfLLs--~Q~dKAvdlF~e~l~~d-~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLLS--NQPDKAVDLFLEMLQED-P-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHhh--cCcchHHHHHHHHHhcC-c-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34444444444 68899999999999865 1 244566678888999999999999999888742 1111 2234456
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhH
Q 038206 177 IHFYASCGHLDLANKVFDNMLERSL---VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
..=|...|-+|.|+.+|..+.+.+. .....|+..|-+..+|++|++.-++..+. +..++..-|
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~---~~q~~~~eI----------- 179 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL---GGQTYRVEI----------- 179 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc---CCccchhHH-----------
Confidence 6778889999999999998876433 35666888899999999999888777543 111111111
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
...|.-|...+.-..+++.|..++.+..+- .+..--.+-..+...|++.+|++.++..
T Consensus 180 -------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 180 -------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred -------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 112333444444456666666666655422 2223333444566677777777777776
Q ss_pred hhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHH
Q 038206 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL-VSNMPMKPDAV 409 (614)
Q Consensus 331 ~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~ 409 (614)
.+.+..--..+...|..+|.+.|+.+++..++..+.+. .++...-..+.+.-....-.+.|... .+.+.-+|+..
T Consensus 241 -~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 241 -LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred -HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 44433333355566677777777777777777776542 23333333343333333334444433 33445567777
Q ss_pred HHHHHHHHH
Q 038206 410 IWRSLLDAC 418 (614)
Q Consensus 410 ~~~~ll~~~ 418 (614)
.+..||..-
T Consensus 317 gf~rl~~~~ 325 (389)
T COG2956 317 GFHRLMDYH 325 (389)
T ss_pred HHHHHHHhh
Confidence 776666654
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-07 Score=91.19 Aligned_cols=301 Identities=14% Similarity=0.130 Sum_probs=218.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHH-HHccCCcHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHH-H
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA-CAYLFAFSQGKQAHAHIFKRGL--VSDVYINNSLIHFYASCGHLD-L 188 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~-~ 188 (614)
.+.++++.-.......|. |+..-+.+.+.+ .-...|+++|..+|+++.+... -.|..+|+.++-.-..+..+. .
T Consensus 241 ~q~~e~~~k~e~l~~~gf--~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGF--PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccC--CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 455666666666777774 444444444443 4577899999999999999853 125677777764443333332 2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 189 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
|..+++ +.+=-..|.-.+.+-|.-.++.++|+..|++..+--+-....|+.+-+-+....+...|.+.+..+++.
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---- 393 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---- 393 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc----
Confidence 333332 222234566677788888999999999999987655555677888889999999999999999999985
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--K-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 345 (614)
.+.|-..|-.|.++|.-.+...-|+-.|++.. + .|...|.+|-.+|.+.++.++|++.|... ...| +.+...+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra-i~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA-ILLG-DTEGSALVR 471 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH-Hhcc-ccchHHHHH
Confidence 56688899999999999999999999999776 3 48899999999999999999999999987 4433 346688999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhc---C-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEY---N-ITP-VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~---~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 420 (614)
|...+-+.++.++|.+.|+..++.. | +.| .....--|..-+.+.+++++|....... + .
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~---------------~-~ 535 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV---------------L-K 535 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH---------------h-c
Confidence 9999999999999999998776632 2 223 2333334666667778887776544332 1 1
Q ss_pred hcCchHHHHHHHHHHHHh
Q 038206 421 KHASVVLSEEVAKQVIES 438 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~ 438 (614)
-....++|..+++++.+.
T Consensus 536 ~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 536 GETECEEAKALLREIRKI 553 (559)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 133456777777776654
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.13 E-value=5.8e-08 Score=92.49 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=196.4
Q ss_pred HHHHHHHHHhc---CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 038206 70 IYSRIIHFASF---ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143 (614)
Q Consensus 70 ~~~~li~~~~~---g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 143 (614)
....+..+..+ |++..|++...+-.+ ..+..|-.-..+--+. |+.+.+-..+.+..+.... ++...+.+..+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~-~~l~v~ltrar 161 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGD-DTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence 34556666666 999999999977554 2344444445556666 9999999999999876423 45555666667
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL-----------VSWNVMIDAFV 212 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~ 212 (614)
.....|+...|..-..++.+.+ +.++.+.......|.+.|++.....++..+.+... .+|+.++.-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999887 44677889999999999999999999999865422 24555555544
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
..+..+.-...++.... ....++..-.+++.-+..||+.++|
T Consensus 241 ~~~~~~gL~~~W~~~pr--------------------------------------~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 241 DDNGSEGLKTWWKNQPR--------------------------------------KLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred ccccchHHHHHHHhccH--------------------------------------HhhcChhHHHHHHHHHHHcCChHHH
Confidence 44444443334444332 2344555666677777777777777
Q ss_pred HHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 038206 293 RQVFESMPKR--DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370 (614)
Q Consensus 293 ~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 370 (614)
.++..+..++ |.. -...-.+.+-++...-++..++-....+..| ..+.+|-..|.+.+.+.+|.+.|+...
T Consensus 283 ~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--- 355 (400)
T COG3071 283 QEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL--- 355 (400)
T ss_pred HHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 7776655432 222 1122234556666666666655434455555 556667777888888888888888664
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...|+..+|+.+.+.|.+.|+.++|.+++++.
T Consensus 356 ~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 356 KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56788888888888888888888888877764
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=2.2e-08 Score=94.44 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=158.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 348 (614)
....+..+...|.+.|++++|.+.|++.. ..+...+..+...|...|++++|.+.+++. .... +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA-LTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhC-CCCHHHHHHHHH
Confidence 35567788899999999999999998765 235678888889999999999999999987 4432 234456667777
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
.+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...|..+...+ ...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY-YLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH-HHcCCHH
Confidence 889999999999999998763222334566777888999999999999999886 3344 456777777777 8899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+|...+++..+..+. +...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998665 677778888999999999999999887754
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=5.1e-08 Score=90.03 Aligned_cols=285 Identities=13% Similarity=0.108 Sum_probs=164.8
Q ss_pred cCCHHHHHHHHhhcCCCChhHHH---HHHHHHHhcCChhHHHHHHHHhhhccCCCh------hhHHHHHHHHHhhCchhH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWN---VMIDAFVQFGEFDSALKLFRRMQILFEPDG------YTFQSITSACAGLATLSL 253 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~pd~------~t~~~ll~a~~~~~~~~~ 253 (614)
..+.++|.+.|-+|.+-|..|+. +|-+.|-+.|..+.|+.+-+.+.++ ||. ...-.+-.=|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46677888888887666555543 5667777788888888877776654 221 112223333556666777
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHH--------HHHHHHHHHHhcCCHHHHHH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT--------SWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~~~~g~~~~A~~ 325 (614)
|+.+|..+... + ..-......|+..|-+..+|++|.++-+++.+-+.. -|.-+...+....+.+.|..
T Consensus 126 AE~~f~~L~de---~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 126 AEDIFNQLVDE---G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHHhcc---h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 77777766653 1 112334555677777777777777766654422221 23344444445667777777
Q ss_pred HHHHHhhhcCCCccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038206 326 YFDRLVVEESFSPNSITFV-GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P 403 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 403 (614)
++.+. .. ..|+.+--+ .+-......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ .
T Consensus 202 ~l~kA-lq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 202 LLKKA-LQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHH-Hh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77655 22 334433222 2334456677777777777777553 33333556667777777777777777776665 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH---hhcCChhhHHHHHHHHHhCCCccCCC
Q 038206 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY---ASARRWNDVGLVRKLMTDKGVTKEPG 480 (614)
Q Consensus 404 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~ 480 (614)
..++...-..+-.-- ....-.+.|.....+-+... |+...+..|+..- +..|++.+...+++.|...-++..|.
T Consensus 278 ~~~g~~~~l~l~~li-e~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 278 TNTGADAELMLADLI-ELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccCCccHHHHHHHHH-HHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 334433333333333 22233445555554444443 4466666666655 34567888888888887766655443
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.1e-07 Score=92.31 Aligned_cols=261 Identities=11% Similarity=-0.020 Sum_probs=198.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
++...-.-..-+-..+++.+..++++...+..++....+..-|.++...|+...-..+=..+++ ..|....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~----~yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD----LYPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCCcchhhH
Confidence 4444555556666777888888888877766566666666666666677766655555445554 356678899999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~ 356 (614)
.--|.-.|..++|++.|.+...- =...|-.....|+-.|..++|+..+... .+. ++-..-.+.-+---|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA-arl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA-ARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH-HHh-ccCCcchHHHHHHHHHHhccH
Confidence 98898899999999999876633 3478999999999999999999988765 221 222222333344458889999
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--C------CC-CHHHHHHHHHHHHHhcCchH
Q 038206 357 SEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNMP--M------KP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~------~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
+.|.++|.... ++.| |+...+-+.-+.-..+.+.+|..+|+..- + ++ -..+++.|-.+| ++.+.++
T Consensus 397 kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~-Rkl~~~~ 472 (611)
T KOG1173|consen 397 KLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY-RKLNKYE 472 (611)
T ss_pred HHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH-HHHhhHH
Confidence 99999999885 5555 66677777767777888999999987651 1 11 345678888888 9999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+|+..+++.+...|+ +..+|.++.-.|...|+++.|.+.|.+..
T Consensus 473 eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999997743
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=1.3e-07 Score=89.28 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccC
Q 038206 279 LIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRG 354 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g 354 (614)
+...|...|++++|.+.|++.. ..+...+..+...+...|++++|.+.+++. ......| ....+..+...+...|
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcC
Confidence 3333444444444444443322 112333444444444455555555555544 2211111 1223333444445555
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVA 432 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~ 432 (614)
++++|...+....+. .+.+...+..+...+...|++++|.+.+++. ... .+...+..+...+ ...|+.+.|..+.
T Consensus 150 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~ 226 (234)
T TIGR02521 150 DFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA-RALGDVAAAQRYG 226 (234)
T ss_pred CHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 555555555555431 1223344455555555555555555555544 111 2333343444444 5555555555555
Q ss_pred HHHHH
Q 038206 433 KQVIE 437 (614)
Q Consensus 433 ~~~~~ 437 (614)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 55443
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8e-06 Score=78.25 Aligned_cols=363 Identities=11% Similarity=0.066 Sum_probs=225.4
Q ss_pred HHHHHHHhc-CChhHHHHHHhcCCC-CChhhHHHHHHHHHcCCCCchHHHHHHHH--------------HHHcC------
Q 038206 72 SRIIHFASF-ADLDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQR--------------MIEQG------ 129 (614)
Q Consensus 72 ~~li~~~~~-g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~--------------m~~~~------ 129 (614)
-..+..|.- ++-+.|.....+.+. ....--|.|+.-+-..+++-.++.--+.+ ..+.+
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 344555555 888888888888776 33334455554444432222222211111 11111
Q ss_pred ---------CCCCCcchHHHHHHHH--HccCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038206 130 ---------NVLPDKHTFPFALKAC--AYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197 (614)
Q Consensus 130 ---------~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 197 (614)
.+ |+..+...-+.++ +..++...+.+.+-.+.+. -++.|+....++.++|...|+.++|...|++..
T Consensus 181 ~S~~m~~~~~~-~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 181 NSLVMHAATVP-DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhheecC-CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 22 3333444444443 3345555555555555443 356678888999999999999999999999875
Q ss_pred CCChhHHHH---HHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc
Q 038206 198 ERSLVSWNV---MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274 (614)
Q Consensus 198 ~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (614)
.-|..+... ..-.+.+.|+.++...+...+....+-...-|..-....-...+.+.|..+-+..++. -+.+..
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~ 335 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHE 335 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc----Ccccch
Confidence 544433332 2334567888888877777765432122222222222223445555555555554443 111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH-HHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL-SAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll-~a~ 350 (614)
.+-.=...+...|++++|.-.|+... .| +..+|.-|+.+|.-.|...+|.-+-++.+.. ++-+..+...+- ..|
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceee
Confidence 33333456777899999998888654 43 7889999999999999999998777665233 233334443331 222
Q ss_pred -hccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHH
Q 038206 351 -NHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVL 427 (614)
Q Consensus 351 -~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~ 427 (614)
-....-++|..+++.-. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|-..+ +....+++
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~-~A~Ne~Q~ 489 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM-RAQNEPQK 489 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH-HHhhhHHH
Confidence 23344578888887664 45665 455677888889999999999999876 5678999999998888 88888999
Q ss_pred HHHHHHHHHHhcCCCCchh
Q 038206 428 SEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~ 446 (614)
|...|..++..+|+ |..+
T Consensus 490 am~~y~~ALr~dP~-~~~s 507 (564)
T KOG1174|consen 490 AMEYYYKALRQDPK-SKRT 507 (564)
T ss_pred HHHHHHHHHhcCcc-chHH
Confidence 99999999999988 5443
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.6e-05 Score=79.72 Aligned_cols=435 Identities=10% Similarity=0.070 Sum_probs=253.4
Q ss_pred hhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc--
Q 038206 3 VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-- 80 (614)
Q Consensus 3 ~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-- 80 (614)
+-+..+|++++ |+..-+++...+ +-+.+.+-.-+-+....+........+...+....+.. +.+ =.+|+.
T Consensus 20 n~~~~~~e~e~---a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~f---EKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNGEYEE---AVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFF---EKAYCEYR 91 (652)
T ss_pred HHhccchHHHH---HHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhH---HHHHHHHH
Confidence 34566777776 668888776554 33444455555555555655444444444442101101 222 445554
Q ss_pred -CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 038206 81 -ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159 (614)
Q Consensus 81 -g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (614)
+.+++|...++...+-|..+...--..+.+. +++++|+.+|+.+.+.+...-+...-..++.+-.. .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-Q 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-H
Confidence 9999999999966665655666666678888 99999999999998876431222222333322111 111 1
Q ss_pred HHHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHhhc--------CCCChh----------HHHHHHHHHHhcCChh
Q 038206 160 HIFKRGLVSDVYINNSL---IHFYASCGHLDLANKVFDNM--------LERSLV----------SWNVMIDAFVQFGEFD 218 (614)
Q Consensus 160 ~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~ 218 (614)
.+......| ..+|..+ .-.+...|++.+|+++++.. .+.|.. .--.|...+...|+..
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 2233333 33567789999999999776 221111 1223556677899999
Q ss_pred HHHHHHHHhhhccCCChhhHHHHH---HHHHhhCchhHH--------------HHHHHHHHHhccCCCCccccHHHHHHH
Q 038206 219 SALKLFRRMQILFEPDGYTFQSIT---SACAGLATLSLG--------------MWAHAYILRHCDHSLVTDVLVNNSLID 281 (614)
Q Consensus 219 ~A~~~~~~m~~~~~pd~~t~~~ll---~a~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~li~ 281 (614)
+|.++|....+..++|........ .+.....++..+ ......+.+. -......-+.++.
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~----qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK----QKQAIYRNNALLA 317 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 999999999877566654333222 222222222221 0111111110 0111222344555
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCH
Q 038206 282 MYCKCGSLDIARQVFESMPKRD-LTSWNSIILGFA--LHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMV 356 (614)
Q Consensus 282 ~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~ 356 (614)
+|. +..+.+.++-...+... ...+..++.... +.....+|.+++... . .+ .|+. +.....+......|++
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~-~~-~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF-A-DG-HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-h-cc-CCchhHHHHHHHHHHHHhcCCH
Confidence 554 55567777776666432 334444444332 233567788888765 2 22 3433 3344455566789999
Q ss_pred HHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHH
Q 038206 357 SEGRDYFD--------VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--------PMKPDAVIWRSLLDACCK 420 (614)
Q Consensus 357 ~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~ll~~~~~ 420 (614)
+.|.+++. .+.+ .+..|. +...++.+|.+.++.+.|..++.+. +-.+.....-....++-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999998 4432 344554 4557888899888877777666554 222222222222333436
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
++|+-++|...++++.+.+|. |..+.+.++.+|++. +.+.|..+-+.
T Consensus 470 r~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 789999999999999999999 999999999999977 56666666544
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=98.97 E-value=2.3e-07 Score=99.14 Aligned_cols=178 Identities=10% Similarity=0.017 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHH---------ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 114 AKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACA---------YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 114 ~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
..++|+.+|++..+.. |+.. .|..+..++. ..+++++|...++.+++.. +.+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3456777777776655 4432 3333332222 1233566666666666654 23455566666666666
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCCh-hhHHHHHHHHHhhCchhHHHHHHH
Q 038206 184 GHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-YTFQSITSACAGLATLSLGMWAHA 259 (614)
Q Consensus 184 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~ 259 (614)
|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..+...+..+...|++++|...+.
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 777777777666522 2 3445666666666677777777766666543 2221 111222222333444444544444
Q ss_pred HHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038206 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 299 (614)
.+.+. ..+.++..+..+...|...|+.++|...+.++
T Consensus 431 ~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 431 ELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 44432 11112223344444444455555555554443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=98.96 E-value=5.6e-07 Score=96.21 Aligned_cols=260 Identities=12% Similarity=0.016 Sum_probs=177.8
Q ss_pred ChhHHHHHHHHHHh-----cCChhHHHHHHHHhhhccCCC-hhhHHHHHHHHH---------hhCchhHHHHHHHHHHHh
Q 038206 200 SLVSWNVMIDAFVQ-----FGEFDSALKLFRRMQILFEPD-GYTFQSITSACA---------GLATLSLGMWAHAYILRH 264 (614)
Q Consensus 200 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~pd-~~t~~~ll~a~~---------~~~~~~~~~~~~~~~~~~ 264 (614)
+...|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++. ..++.+.|...++.+.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45566676666422 12357899999888765 444 444544444333 223477888888888875
Q ss_pred ccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 265 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
-+.+...+..+...+...|++++|...|++.. .| +...|..+...+...|++++|+..+++. .. +.|+..
T Consensus 334 ----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A-l~--l~P~~~ 406 (553)
T PRK12370 334 ----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC-LK--LDPTRA 406 (553)
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCCCh
Confidence 34457788888889999999999999999876 34 4667888889999999999999999987 44 345432
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 038206 342 -TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIW-RSLLDA 417 (614)
Q Consensus 342 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~ 417 (614)
.+..++..+...|++++|...++...+. .+| +...+..+...|...|++++|.+.+.++ +..|+.... +.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 2233444566688999999999988652 234 4556777888999999999999999987 445554444 444444
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+ ...| +.+...++.+.+..-. ....+..+...|+-.|+-+.+... +++.+.|
T Consensus 485 ~-~~~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 Y-CQNS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H-hccH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4 5555 4777777777664322 122222255667777787777766 7776654
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=3.4e-07 Score=93.56 Aligned_cols=236 Identities=14% Similarity=0.129 Sum_probs=166.7
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhcc--CC-CCccc-cHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCD--HS-LVTDV-LVNNSLIDMYCKCGSLDIARQVFESMPK-------R- 302 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~--~g-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~- 302 (614)
..|+..+...|...|+++.|..+++...+... .| ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555566677777777777777776665421 12 12222 2333466788999999999999887751 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hcCC-CccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcC--
Q 038206 303 ---DLTSWNSIILGFALHGRAEAALKYFDRLVV----EESF-SPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYN-- 371 (614)
Q Consensus 303 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 371 (614)
-..+++.|-..|.+.|++++|...+++.+. ..|. .|.. .-++.+...|...+.+++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677788889999999998888876521 1222 2333 3355667778999999999999887765433
Q ss_pred CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 372 ITPV----LEHYGCLVDLLARAGNIDEALHLVSNM---------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
..++ ..+++.|...|-+.|++++|++++++. +..+. ...++.|-.+| .+.++.+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcccchHHHHHHHHHH
Confidence 2222 467899999999999999999999886 11222 44567777788 888999999999887654
Q ss_pred ----hcCC-C-CchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 438 ----SEGG-I-CSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 438 ----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.||. | ...+|..|...|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3544 1 13567889999999999999999998765
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-06 Score=85.92 Aligned_cols=276 Identities=14% Similarity=0.077 Sum_probs=167.2
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (614)
-+-.. +++.+..++++...+.. + ++...+..=|.++...|+-.+-..+=..+++.- +..+.+|-++.-.|.-.|+.
T Consensus 253 ~~y~~-c~f~~c~kit~~lle~d-p-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 253 RLYYG-CRFKECLKITEELLEKD-P-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHc-ChHHHHHHHhHHHHhhC-C-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 34444 66777777777666654 2 455555555556666666555555545555442 44455666666666666777
Q ss_pred HHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 187 DLANKVFDNMLERS---LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 187 ~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
++|++.|.+...-| ...|-.....|+-.|..++|+..|...-+-++-..--+.-+---|.+.++.+.|.+.+.+...
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 77777776653332 246777777777777777777766665443221111122222334556666666666666654
Q ss_pred hccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 264 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
. .+.|+.+.+-+.-++...+.+.+|..+|+... ...+.. ..+ ..--..++
T Consensus 409 i----~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l------------------------~~ik~~-~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 409 I----APSDPLVLHELGVVAYTYEEYPEALKYFQKAL------------------------EVIKSV-LNE-KIFWEPTL 458 (611)
T ss_pred c----CCCcchhhhhhhheeehHhhhHHHHHHHHHHH------------------------HHhhhc-ccc-ccchhHHH
Confidence 2 34455566666555555566666666554321 111111 011 11244567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 418 (614)
+.|-.+|.+.+..++|+..|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++||-.+-..+++.+
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 7788888888888899888888865 44557788888888888889999999888776 6678877777666654
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.83 E-value=3.1e-07 Score=93.81 Aligned_cols=231 Identities=14% Similarity=0.154 Sum_probs=130.3
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--
Q 038206 136 HTFPFALKACAYLFAFSQGKQAHAHIFKR-----GL-VSDVY-INNSLIHFYASCGHLDLANKVFDNMLE-------R-- 199 (614)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~-------~-- 199 (614)
.+...+...|...|+++.|.+++.+.++. |. .|.+. ..+.+..+|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35666778888889999998888877764 21 22222 234466678888888888888877621 1
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-------cCCChh-hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCC
Q 038206 200 --SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-------FEPDGY-TFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269 (614)
Q Consensus 200 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~pd~~-t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (614)
-..+++.|...|.+.|++++|...++...+. ..|... -++.+...|...+..+++..++....+....-+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1346777778888888888887777766443 112222 234445556666777777766665555422122
Q ss_pred Ccc----ccHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHh---
Q 038206 270 VTD----VLVNNSLIDMYCKCGSLDIARQVFESMPKR-----------DLTSWNSIILGFALHGRAEAALKYFDRLV--- 331 (614)
Q Consensus 270 ~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~--- 331 (614)
.++ ..+++.|...|.+.|++++|+++|++.... .....+.|-..|.+.++.++|.++|.+-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 245666666666666666666666654311 11234445555555555555555554420
Q ss_pred hhcCC-CccH-HHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 332 VEESF-SPNS-ITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 332 ~~~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
+.-|. .|+. .+|..|...|...|+++.|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 11111 1221 34444444455555555554444443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.6e-05 Score=73.29 Aligned_cols=374 Identities=14% Similarity=0.073 Sum_probs=221.3
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH-HHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL-KACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~~~~~~~~~~~a~~ 156 (614)
|++++|..++..+.+ ++...|-.+.-.+.-- |.+.+|..+-... |+......++ ...-+.++-++-..
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka-------~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhCcHHHHHH
Confidence 999999998877654 5555565555554445 7777777654332 4444444444 44557778777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHH-HHHHHhcCChhHHHHHHHHhhhccCC
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVM-IDAFVQFGEFDSALKLFRRMQILFEP 233 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~p 233 (614)
+++.+... ..-.-+|.++.--.-...+|.+++.++.. |+....|.- .-+|.+..-++-+.+++.--.+.++-
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 77776442 23334555655555678999999998854 344455553 34566777777777776665554332
Q ss_pred ChhhHHHHHHHHHh--hCchhHHHHHHHHHHHhccC-----------CCC------------c-----cccHHHHHHHHH
Q 038206 234 DGYTFQSITSACAG--LATLSLGMWAHAYILRHCDH-----------SLV------------T-----DVLVNNSLIDMY 283 (614)
Q Consensus 234 d~~t~~~ll~a~~~--~~~~~~~~~~~~~~~~~~~~-----------g~~------------~-----~~~~~~~li~~y 283 (614)
..+..+ +.+|.. .-.-..++.-...+....+. ++. | =+..--.|+--|
T Consensus 218 StiA~N--Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 218 STIAKN--LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred cHHHHH--HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 223333 333321 11111111111111111000 100 0 011222345567
Q ss_pred HhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhhcCCCccHHH-HHHHHHHHhccCC
Q 038206 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG-------RAEAALKYFDRLVVEESFSPNSIT-FVGVLSACNHRGM 355 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~~g~~p~~~t-~~~ll~a~~~~g~ 355 (614)
.+.+++.+|..+.+++....+.-|-.---.++..| ...-|.+.|+-. -..+..-|... -.++.+++--..+
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHH
Confidence 88899999999988876444433322112222333 345566666654 44444444322 1233334444567
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP-MK-PDAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+++...+++.+.. +-..-|...+ .+..+++..|.+.+|+++|-.+. .+ .|..+|.+++.-|....+..+.|..++-
T Consensus 375 FddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 375 FDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 8888888888854 4444455544 47889999999999999998873 12 5789999999988788999988877654
Q ss_pred HHHHhcCCCCchh-HHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 434 QVIESEGGICSGV-YVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 434 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
++ +-.-+..+ ...+.+-|.+++.+=-|.+.|+.+...+-
T Consensus 453 k~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 453 KT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 43 32212222 23557789999999999999998876443
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.7e-05 Score=76.34 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=165.2
Q ss_pred HhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHH
Q 038206 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 291 (614)
.-.|+...|...|+......+-+...|.-+-.++....+.++..+.|....+. -+.++.+|..-..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHH
Confidence 34678889999999887762222222666777788999999999999999875 34567788888888889999999
Q ss_pred HHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 292 ARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 292 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
|..=|++... .++..|-.+--+..+.+++++++..|++. .+ ..+--...|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~-kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA-KK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999998774 35677777777777889999999999997 33 3444457788888889999999999999998864
Q ss_pred hcCCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 369 EYNITPV---------LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 369 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
+.|+ +.+--+++-.-- .+++..|..++++. .+.| ....|.+|-..- .+.|+.++|+++|++...
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~-lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFE-LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHH
Confidence 2332 222222332223 38999999999887 5666 456788888777 899999999999998876
Q ss_pred hc
Q 038206 438 SE 439 (614)
Q Consensus 438 ~~ 439 (614)
+-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 53
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.73 E-value=0.00015 Score=75.36 Aligned_cols=385 Identities=11% Similarity=0.106 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHH-cC----CCCchHHHHHHHHHHHcCCCCCCcchHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACA-RS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~-~~----~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ 140 (614)
.+.......|.+ |+.++|..++..+.. |+-..|-..+..+. -. ....+...++|+++...- |.......
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y---p~s~~~~r 115 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY---PRSDAPRR 115 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC---ccccchhH
Confidence 566666777777 888888887777765 54444444333332 11 024556667777776654 44433333
Q ss_pred HHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC------------------CCCh
Q 038206 141 ALKACAYLFAF-SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML------------------ERSL 201 (614)
Q Consensus 141 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------~~~~ 201 (614)
+.-.+.....+ ..+..+...+++.|++ .+++.|-..|......+-..+++.... .|..
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 32222221122 2344555666667754 456777777776655555555555431 1222
Q ss_pred h--HHHHHHHHHHhcCChhHHHHHHHHhhhccCCC-hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHH
Q 038206 202 V--SWNVMIDAFVQFGEFDSALKLFRRMQILFEPD-GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278 (614)
Q Consensus 202 ~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (614)
. +|.-+...|-..|++++|++.+++.... .|+ ...|..-.+.+-+.|++..|....+..... -..|..+-+-
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L----D~~DRyiNsK 267 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL----DLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----ChhhHHHHHH
Confidence 2 3456678888999999999999988776 444 557777888899999999999999999875 3457778888
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC------H----HHH--HHHHHHHHhcCCHHHHHHHHHHHhhhc-----CCCccHH
Q 038206 279 LIDMYCKCGSLDIARQVFESMPKRD------L----TSW--NSIILGFALHGRAEAALKYFDRLVVEE-----SFSPNSI 341 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~~~~------~----~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~-----g~~p~~~ 341 (614)
.+..+.++|++++|.+++.....++ . ..| .....+|.+.|++..|++-|..+ .+. .-+-|-.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v-~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV-LKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHhcccccHH
Confidence 8999999999999999998877554 1 134 33456789999999998877665 221 1122333
Q ss_pred H----------HHHHHHHHhccCC-------HHHHHHHHHHHHHhcCCCC-----------ChhHHHHHHHHH---HHcC
Q 038206 342 T----------FVGVLSACNHRGM-------VSEGRDYFDVMINEYNITP-----------VLEHYGCLVDLL---ARAG 390 (614)
Q Consensus 342 t----------~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g 390 (614)
+ |..+|...-+... ...|.+++-.+-.+..... +..--..+-.-- .+..
T Consensus 347 ~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 347 SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 3 3333332211111 1233344333322100000 000000000000 0111
Q ss_pred CHHHHHHHHH-----------hC----CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 391 NIDEALHLVS-----------NM----PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 391 ~~~~A~~~~~-----------~m----~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
.-+++.+.-. .. +...|...... -+.....-+++|.++++-+.+..++ +..+|..-...|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge---kL~~t~dPLe~A~kfl~pL~~~a~~-~~et~~laFeVy~ 502 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE---KLLKTEDPLEEAMKFLKPLLELAPD-NIETHLLAFEVYL 502 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH---HHhcCCcHHHHHHHHHHHHHHhCcc-chhhHHHHhHHHH
Confidence 1111111100 00 11112111111 1213334678999999999999999 9999999999999
Q ss_pred hcCChhhHHHHHHH
Q 038206 456 SARRWNDVGLVRKL 469 (614)
Q Consensus 456 ~~g~~~~a~~~~~~ 469 (614)
+.|++--|.+.+.+
T Consensus 503 Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 503 RKGKYLLALQALKK 516 (517)
T ss_pred hcCcHHHHHHHHHh
Confidence 99999888877653
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=6.8e-07 Score=82.74 Aligned_cols=197 Identities=12% Similarity=0.030 Sum_probs=142.3
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
|-+.+|-.|-.+|.+..++..|+.+|.+-.+ | |+....-+...+-..++.++|.++++.. .+. -..+.....++.
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v-lk~-~~~nvEaiAcia 331 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV-LKL-HPINVEAIACIA 331 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH-Hhc-CCccceeeeeee
Confidence 4445566666777777777777777766542 3 3333344555566677788888888876 221 122334455556
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhc
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM---PMKPD--AVIWRSLLDACCKKH 422 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~ 422 (614)
..|.-.++++.|..++..+.+ .|+. ++..|+.+.-+|.-.+++|-++.-|++. -.+|+ ..+|..+-... ...
T Consensus 332 ~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va-V~i 408 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA-VTI 408 (478)
T ss_pred eccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE-Eec
Confidence 667777888888888888876 4654 5666777777777788888888777765 11243 45787777766 788
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
||+..|.+.|+-.+..+++ +...++.|.-.-.+.|++++|..+++...+.
T Consensus 409 GD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 409 GDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999999 9999999999999999999999999887654
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.72 E-value=2.2e-06 Score=83.74 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=110.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSA 349 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a 349 (614)
..|..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|.+.|++. .+ +.|+. .++..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A-l~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV-LE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHH
Confidence 345566666777777777777776654 235667777777777777777777777766 33 44543 555556666
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVL 427 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~ 427 (614)
+...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+. ...|+...|. +.. ...|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~--~~~--~~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWN--IVE--FYLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHH--HHH--HHccCCCH
Confidence 67777777777777777542 333221122222334456777777777543 2223322221 211 22344433
Q ss_pred HHHHHHHHH-------HhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 428 SEEVAKQVI-------ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 428 a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+ +.++.+. +..+. ...+|..+...|.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 2333333 23333 34567777888888888888888887776544
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.71 E-value=0.00041 Score=70.62 Aligned_cols=394 Identities=15% Similarity=0.178 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC------CCCCCcchHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------NVLPDKHTFPFA 141 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~------~~~p~~~t~~~l 141 (614)
.+|.-.+.+... |-++-+.+++++-.+-++..-+--|.-++.. ++.++|-+.+....... .+ .+...|.-+
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~-d~~~eaa~~la~vln~d~f~sk~gk-Sn~qlw~el 216 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS-DRLDEAAQRLATVLNQDEFVSKKGK-SNHQLWLEL 216 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cchHHHHHHHHHhcCchhhhhhccc-chhhHHHHH
Confidence 456666666555 6677777777776665555566667777777 77777777776654321 11 233345544
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHh--
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGL--VSD--VYINNSLIHFYASCGHLDLANKVFDNMLER--SLVSWNVMIDAFVQ-- 213 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~-- 213 (614)
-...++..+.-...++ +.+.+.|+ -+| -..|++|.+.|.+.|.++.|..+|++..+. .+.-++.+-++|++
T Consensus 217 cdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence 4444444433332222 22223332 233 357899999999999999999999886443 23334443333332
Q ss_pred --------------cCCh------hHHHHHHHHhhhc------------cCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 214 --------------FGEF------DSALKLFRRMQIL------------FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 214 --------------~g~~------~~A~~~~~~m~~~------------~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
.|+. +-.+.-|+.+... -+-+..+|..-.. ...|+..+-...+..+
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHH
Confidence 1221 1222223322211 0111222222221 2334455556677777
Q ss_pred HHhccCCCCcc--ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038206 262 LRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVFESMPKRDL-------TSWNSIILGFALHGRAEAALKYFDRLVV 332 (614)
Q Consensus 262 ~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (614)
++..++...+. ...|..+.+.|-..|+++.|..+|++..+-+- .+|-.-...=.++.+++.|+++++.. .
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A-~ 452 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA-T 452 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh-h
Confidence 77544433322 34688899999999999999999998875332 34555555556788899999988765 2
Q ss_pred hcCCC----------c-cHHH------HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 333 EESFS----------P-NSIT------FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 333 ~~g~~----------p-~~~t------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
...-. | -... |...++.--..|-++....+++.+..-.-..|.+.. .....+-...-++++
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEES 530 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHH
Confidence 21111 1 1122 233333334557788888888888764333444332 222334556678899
Q ss_pred HHHHHhC-C-CC-CCH-HHHHHHHHHHHHhc--CchHHHHHHHHHHHHhcCCCCc-hh-HHHHHHHHhhcCChhhHHHHH
Q 038206 396 LHLVSNM-P-MK-PDA-VIWRSLLDACCKKH--ASVVLSEEVAKQVIESEGGICS-GV-YVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 396 ~~~~~~m-~-~~-p~~-~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~g~~~~a~~~~ 467 (614)
.+++++- + ++ |++ ..|++.+.-+..+- ..+++|..+|+++++.-| |.. .+ |......-.+-|....|+.++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999875 2 22 454 47888777763332 468999999999999544 332 22 223333334568888888888
Q ss_pred HHHH
Q 038206 468 KLMT 471 (614)
Q Consensus 468 ~~m~ 471 (614)
++..
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 8743
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=0.00035 Score=72.62 Aligned_cols=395 Identities=12% Similarity=0.077 Sum_probs=243.6
Q ss_pred CCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc
Q 038206 61 LPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 61 ~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
+. .| + .+|..|.-+... |+++.+-+.|++... .....|+.+-..+... |.-..|+.+.+.-......++|..
T Consensus 319 ~q-nd-~-ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 319 FQ-ND-A-AIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-GSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hc-ch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-ccchHHHHHHHhhcccccCCCcch
Confidence 44 56 7 889888888888 999999999987653 4566788888888888 888899999887766553313333
Q ss_pred hHHHHHHHHH-ccCCcHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHhhcCCC-
Q 038206 137 TFPFALKACA-YLFAFSQGKQAHAHIFKR--GL--VSDVYINNSLIHFYASC-----------GHLDLANKVFDNMLER- 199 (614)
Q Consensus 137 t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~m~~~- 199 (614)
.+-..-+.|. +.+..+++..+-..++.. +. ......|-.+--+|+.. ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444454 456677777666666551 11 11223344444444322 1134567777766433
Q ss_pred ----ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc
Q 038206 200 ----SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274 (614)
Q Consensus 200 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (614)
++.-|-++ -|+..++.+.|++..++...- -.-+...|..+.-.++..+++..|..+........ |. |..
T Consensus 475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~--N~~ 548 (799)
T KOG4162|consen 475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GD--NHV 548 (799)
T ss_pred CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hh--hhh
Confidence 22233222 355567888888888887766 55667777777777777888888888777666532 11 100
Q ss_pred HHHHHHHHHHhcCCHHHH--------------------------HHHHhcCC----CC-CH-HHHHHHHHHHHhcCCHHH
Q 038206 275 VNNSLIDMYCKCGSLDIA--------------------------RQVFESMP----KR-DL-TSWNSIILGFALHGRAEA 322 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A--------------------------~~~~~~m~----~~-~~-~~~~~li~~~~~~g~~~~ 322 (614)
....-+..-...++.++| .+.+..+. ++ +. .++..+.. .+. -+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~ 626 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKS 626 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhh
Confidence 000001111112333333 22222222 11 21 22222222 111 11111
Q ss_pred HHHHHHHHhhhcCCCccH--------HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 323 ALKYFDRLVVEESFSPNS--------ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 323 A~~l~~~m~~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
+..-.. | ...-+.|+. ..+......+.+.+..+++..-+.+..+ -.+.....|......+...|..++
T Consensus 627 ~~se~~-L-p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 627 AGSELK-L-PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cccccc-c-CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 100000 2 222222322 2233445567788888999877777643 333366777777788889999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHH--HHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 395 ALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEE--VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 395 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
|.+.|... -+.|+ +.+-.++-..+ ...|+...|.. ++..+.+.+|. +...|-.|..++.+.|+.++|.+-|...
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~l-le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELL-LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHH-HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99988776 66775 55666777777 88899888888 99999999999 9999999999999999999999999877
Q ss_pred HhC
Q 038206 471 TDK 473 (614)
Q Consensus 471 ~~~ 473 (614)
.+-
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 554
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.5e-06 Score=80.61 Aligned_cols=229 Identities=13% Similarity=0.108 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHH
Q 038206 205 NVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284 (614)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 284 (614)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-++|.+....+.|..++..-.+ .++.|+....-....+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld----~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD----SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh----cCCchhhhhhhhHHHHH
Confidence 34455555555555555555544433 33444555555555555555555555555544 23444444444455555
Q ss_pred hcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 038206 285 KCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 285 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
..++.++|.++++...+ -|+.+..++..+|.-.++++-|+..++++ ...|+. +...|..+--+|.-.++++-+..
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH-HHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 56666666666665542 24444445555566666666666666666 555543 23445555555666666666666
Q ss_pred HHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 362 YFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 362 ~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
-|...... --.|+ ..+|..|-....-.|++.-|.+-|+-. .-.| +...++.|---- .+.|+++.|..+++.+..
T Consensus 380 sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~-~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA-ARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH-hhcCchHHHHHHHHHhhh
Confidence 66655442 22232 234555555555666666666666554 1122 344555554444 566677777777766666
Q ss_pred hcCCC
Q 038206 438 SEGGI 442 (614)
Q Consensus 438 ~~~~~ 442 (614)
..|..
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 65553
No 75
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.4e-08 Score=60.62 Aligned_cols=34 Identities=41% Similarity=0.576 Sum_probs=28.1
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038206 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197 (614)
Q Consensus 164 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 197 (614)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.66 E-value=0.00041 Score=70.58 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC-----CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN-----PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
.+|-.-+....+ |++...+.+|++... .-...|...|.-..+. +-++-++.+|++.++.. |. .-.--+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~---P~--~~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVA---PE--AREEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcC---HH--HHHHHH
Confidence 344444555555 777777777776443 2334577777666666 88888889998888754 33 355667
Q ss_pred HHHHccCCcHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCHH---HHHHHHhhcCCC--C--hhHHHHHHH
Q 038206 143 KACAYLFAFSQGKQAHAHIFKRG------LVSDVYINNSLIHFYASCGHLD---LANKVFDNMLER--S--LVSWNVMID 209 (614)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~m~~~--~--~~~~~~li~ 209 (614)
..++..+++++|.+.+...+... .+.+...|+-+-+..++.-+.- ....++..+..+ | ...|++|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 77788888888888888775321 2445566777766666554322 334555555443 3 347999999
Q ss_pred HHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh
Q 038206 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~ 248 (614)
-|.+.|.+++|..+|++.... ..+..-|+.+.++|+..
T Consensus 257 YYIr~g~~ekarDvyeeai~~-v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT-VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-heehhhHHHHHHHHHHH
Confidence 999999999999999887765 23334455566665543
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3.9e-05 Score=72.15 Aligned_cols=371 Identities=11% Similarity=0.087 Sum_probs=225.0
Q ss_pred cCChhHHHHHHhcCCC--C-ChhhHHHHHH-HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 80 FADLDYAFRVFYQIEN--P-NSFTWNTLIR-ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 80 ~g~~~~A~~~f~~m~~--~-~~~~~~~li~-~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
+.++..|+.+++--.. + ...+.+..|. .+.+- |++++|+..|.-+.... . |+...+..+.-...-.|.+.+|+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~~-~-~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNKD-D-APAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhccC-C-CCcccchhHHHHHHHHHHHHHHH
Confidence 3556666666543322 1 1113333343 45566 99999999999887754 3 56666666665666678888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCCh
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG 235 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~ 235 (614)
++-... +.++-....|.+.-.+.++-++-..+-+.+... ..---+|.+..-..-.+.+|+++|.+.... .|+-
T Consensus 112 ~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey 184 (557)
T KOG3785|consen 112 SIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEY 184 (557)
T ss_pred HHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-Chhh
Confidence 775543 233344455666777788877766666555332 222233444444455789999999998765 4555
Q ss_pred hhHHHHHHH-HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh--cCCHHHH--HHHHhcCC----------
Q 038206 236 YTFQSITSA-CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK--CGSLDIA--RQVFESMP---------- 300 (614)
Q Consensus 236 ~t~~~ll~a-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A--~~~~~~m~---------- 300 (614)
...+.-+.. +.+..-.+.+.++.....+. ++.++...|.......+ .|+..++ ..+-+...
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 555554444 46777778888888777764 44445555544433333 2333222 12222221
Q ss_pred CCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH-h----ccC
Q 038206 301 KRD---------------------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC-N----HRG 354 (614)
Q Consensus 301 ~~~---------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~-~----~~g 354 (614)
+.| +..---|+-.|.+.++..+|..+.+++ ....|-......+..+- . ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 011 112233455678899999999998865 33555555555544432 1 222
Q ss_pred CHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhcCchHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVL-EHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRSLLDACCKKHASVVLSEE 430 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~~a~~ 430 (614)
.+.-|.+.|+..-+ .+..-|. .--.++...+.-..++++.+-.++.+. ..-|...+| +..+. ...|++.+|++
T Consensus 338 HlKiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk-~atgny~eaEe 414 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAK-LATGNYVEAEE 414 (557)
T ss_pred HHHHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHH-HHhcChHHHHH
Confidence 34567777765532 3444332 223455666666677888888777762 223444444 55677 77899999999
Q ss_pred HHHHHHHhcCCCCchhHH-HHHHHHhhcCChhhHHHHHHHHH
Q 038206 431 VAKQVIESEGGICSGVYV-LLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+|-++.....+ |..+|. .|.+.|.++++.+-|+.++-++.
T Consensus 415 lf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 415 LFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99988777777 777775 56789999999999998875543
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.65 E-value=1.4e-05 Score=78.20 Aligned_cols=91 Identities=14% Similarity=0.003 Sum_probs=49.7
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhc
Q 038206 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQF 214 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 214 (614)
|......+...|+.++|...|...++.. +.+...|+.+...|...|++++|...|+...+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444444555566666666555555543 22345555566666666666666666655522 2 234555555555666
Q ss_pred CChhHHHHHHHHhhh
Q 038206 215 GEFDSALKLFRRMQI 229 (614)
Q Consensus 215 g~~~~A~~~~~~m~~ 229 (614)
|++++|++.|++...
T Consensus 146 g~~~eA~~~~~~al~ 160 (296)
T PRK11189 146 GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655543
No 79
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.6e-08 Score=60.51 Aligned_cols=33 Identities=42% Similarity=0.703 Sum_probs=27.5
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788888888888888888888888888888874
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=2.6e-05 Score=80.85 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDAC 418 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 418 (614)
++.-+...|...|+.++|.++.+..++ ..|+ +..|..-...|-+.|++.+|.+.++.. ...+ |...-+--...+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445556677777777777777654 2343 666777777777777777777777666 2233 344444444444
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhH--------HHHHHHHhhcCChhhHHHHHHHHH
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVY--------VLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.+.|+++.|.+++......+..|....+ .-...+|.+.|++..|.+-|..+.
T Consensus 273 -LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 -LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred -HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777777777777777665533222111 345677788888888777665543
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=5.9e-05 Score=77.33 Aligned_cols=181 Identities=11% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVG 345 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ 345 (614)
|.......|-+-..-.-+.|++.+|+++|-.+..|+.. |..|-++|..+..+++..+- .||. .|-..
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~------h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKH 887 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh------ChhhhhHHHHH
Confidence 33334444544455556677888888888777777653 56777788888777777643 2222 45555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CCHHHHHHH------H
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK----PDAVIWRSL------L 415 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~l------l 415 (614)
+..-+-..|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-+-. .-...|.-- +
T Consensus 888 f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 6666677777777777665542 2456677777777777777776554210 011222211 1
Q ss_pred HHHHHhcCch-------------HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 416 DACCKKHASV-------------VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 416 ~~~~~~~~~~-------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..+ .++|-+ +.|..+.+-..+.. -.....-+.-.+...|++++|-+-+-+..+.
T Consensus 958 kll-nk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 958 KLL-NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHH-HhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 112 333333 33333333222211 1234445555667788888887776655443
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=0.00021 Score=72.43 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
|..+...+...|++++|..+|++..
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3345556666666666666666543
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=1e-05 Score=78.06 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh----c
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN----H 352 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~----~ 352 (614)
.....+|...|++++|.++++.- .+.......+..|.+.++++.|.+.++.| ++. ..| .+...+..++. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~-~~~--~eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNM-QQI--DED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHH-HCC--SCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc--CCc-HHHHHHHHHHHHHHhC
Confidence 33345677789999999988876 56667777888999999999999999999 653 333 44444555443 2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCch-HHHH
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASV-VLSE 429 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~-~~a~ 429 (614)
...+.+|.-+|+++.. ...+++.+.+.+..++...|++++|.+++.+. ...| |..+...++... ...|+. +.+.
T Consensus 180 ~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~-~~~gk~~~~~~ 256 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS-LHLGKPTEAAE 256 (290)
T ss_dssp TTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH-HHTT-TCHHHH
T ss_pred chhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHhCCChhHHH
Confidence 3468899999999865 55678888999999999999999999988875 3344 455666666666 555655 7788
Q ss_pred HHHHHHHHhcCC
Q 038206 430 EVAKQVIESEGG 441 (614)
Q Consensus 430 ~~~~~~~~~~~~ 441 (614)
+.+.++....|.
T Consensus 257 ~~l~qL~~~~p~ 268 (290)
T PF04733_consen 257 RYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHCHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 888888888776
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.0013 Score=67.32 Aligned_cols=378 Identities=10% Similarity=0.055 Sum_probs=205.5
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|+-++|......-.. .+.+.|..+--.+-.. .++++|+..|+.....+ || ...+.-+--.-++.++++....
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD-KKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhh-hhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 778888777765544 4566677665444444 78888888888888766 44 3444444444456667776666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHH------HHHHHhcCChhHHHHHHH
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-----RSLVSWNVM------IDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~ 225 (614)
...++.+.. +.....|..+.-++.-.|+...|..+.++..+ ++...|.-. ......+|..++|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666665542 22344566666677777788888777766522 333333222 234556777777777766
Q ss_pred HhhhccCCChhhH-HHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH-HHHhcCCCC-
Q 038206 226 RMQILFEPDGYTF-QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR-QVFESMPKR- 302 (614)
Q Consensus 226 ~m~~~~~pd~~t~-~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~~- 302 (614)
.-...+ .|...+ .+-.....+.+++++|..++..++.. .+.+...|--+..++.+-.+.-++. .+|....+.
T Consensus 210 ~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 210 DNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred hhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 654431 122222 23334456777788888887777764 2333334444455554333333333 555544311
Q ss_pred -CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHH----HHHHHHHHHHhcC-----
Q 038206 303 -DLTSWNSIILGFALHGRAE-AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE----GRDYFDVMINEYN----- 371 (614)
Q Consensus 303 -~~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----- 371 (614)
-...-..+--......... ..-+++..+ ...|+++-...+.++.. .....+- +..+...+.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~-l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~-~~~f~~~ 359 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPL-LSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSG-TGMFNFL 359 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHH-hhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhccc-ccCCCcc
Confidence 0000000000011112222 233344444 56666554333333322 2111111 1222222211 11
Q ss_pred -----CCCChh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhcCCC
Q 038206 372 -----ITPVLE--HYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWR-SLLDACCKKHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 372 -----~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
-+|+.. ++-.++..|-+.|+++.|...++.. .-.|+.+-.. .=-..+ ...|+++.|..++++..+++..
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~-kH~G~l~eAa~~l~ea~elD~a- 437 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF-KHAGLLDEAAAWLDEAQELDTA- 437 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhccch-
Confidence 134443 4456788888899999999988876 4456544332 222334 5668999999999998888755
Q ss_pred CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
|...-.--..-..++.+.++|.++.....+.|.
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 433222344445678889999998888877664
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=0.00045 Score=70.45 Aligned_cols=388 Identities=13% Similarity=0.132 Sum_probs=243.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcC----CC-CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQI----EN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m----~~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 143 (614)
..+-.++..|..+++...+++.+.+ ++ +++.+---+ .+... |+-++|.+..+.-.+.++ -+.+.|..+.-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL--~L~~l-g~~~ea~~~vr~glr~d~--~S~vCwHv~gl 83 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGL--TLNCL-GKKEEAYELVRLGLRNDL--KSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccc--hhhcc-cchHHHHHHHHHHhccCc--ccchhHHHHHH
Confidence 5677778878775555544444444 33 333322111 23334 888999999888877653 36667777777
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 220 (614)
.+....++++|.+.|..+.+.+ +.|..++.-|.-.=++.|+++.....-....+ .....|..+..++.-.|+...|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999876 44666776666666677777776666555533 3467899999999999999999
Q ss_pred HHHHHHhhhc--cCCChhhHHHHHHH------HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 221 LKLFRRMQIL--FEPDGYTFQSITSA------CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 221 ~~~~~~m~~~--~~pd~~t~~~ll~a------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
..+.++..+. -.|+...+.-.... ....|.++.+.+........ +......-..-.+.+.+.+++++|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999999887 35777766544332 34566666666655544432 222333444567788999999999
Q ss_pred HHHHhcCCC--CCHHHHHHHH-HHHHhcCCHHHHH-HHHHHHhhhcCCCccHHHH-HHHHHHHhccCCHHHHHHHHHHHH
Q 038206 293 RQVFESMPK--RDLTSWNSII-LGFALHGRAEAAL-KYFDRLVVEESFSPNSITF-VGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 293 ~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~l~~~m~~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
..++..+.. ||..-|.-.+ .++.+-.+.-+++ .+|... ... .|-...- ..=++........+..-.++..+.
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l-s~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL-SEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 999998874 4555555444 4443344444454 666655 221 2211111 111111122223333444555555
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCCHH----HHHHHHHhC-C------------CCCCHHHHHH--HHHHHHHhcCchHHH
Q 038206 368 NEYNITPVLEHYGCLVDLLARAGNID----EALHLVSNM-P------------MKPDAVIWRS--LLDACCKKHASVVLS 428 (614)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~m-~------------~~p~~~~~~~--ll~~~~~~~~~~~~a 428 (614)
+ .|+++-. ..+...|-.-...+ -+..+...+ + ..|....|.. +...+ -..|+++.|
T Consensus 316 ~-Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~-D~~g~~~~A 390 (700)
T KOG1156|consen 316 S-KGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY-DKLGDYEVA 390 (700)
T ss_pred h-cCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH-HHcccHHHH
Confidence 5 3776532 23333332211111 112222222 1 2467666665 55666 778999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
+...+.++..-|. -..-|..-.+++...|.+++|..++++..+.+.
T Consensus 391 ~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 391 LEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999998887666 456677777999999999999999999877554
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=0.00029 Score=71.32 Aligned_cols=197 Identities=11% Similarity=-0.008 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccH--HHHHHHHHH
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNS--ITFVGVLSA 349 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~--~t~~~ll~a 349 (614)
...+...+...|++++|...+++.. ..+...+..+...|...|++++|...+++. .... ..|+. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~-l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW-RDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh-hhccCCCcchhHHHHHHHHHH
Confidence 3344556666777777777776554 224455666666667777777777777665 2211 11222 223345556
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHHHcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHY-G--CLVDLLARAGNIDEALHL---VSN---M-PMKPDAVIWRSLLDACC 419 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~ 419 (614)
+...|+.++|..+++.........+..... + .++.-+...|....+.+. ... . +.............++
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~- 274 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL- 274 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH-
Confidence 667777777777777664321111111111 1 222333333422222221 111 1 1001112222344455
Q ss_pred HhcCchHHHHHHHHHHHHhcCCC--------CchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 420 KKHASVVLSEEVAKQVIESEGGI--------CSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...|+.+.|...++.+....-.+ ..........++...|++++|.+.+......+
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66788888888888876532110 12233455566779999999999998876544
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.49 E-value=1.7e-05 Score=70.48 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVD 384 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 384 (614)
...|..+|.+.|+...|..-+++. .+ ..|+. .++..+...|.+.|..+.|.+-|+...+ +.| +..+.|..-.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekA-L~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKA-LE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 445566777777777777777766 33 34443 5566666677777888888777777753 344 4566677777
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 385 LLARAGNIDEALHLVSNMPMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
.+|..|++++|...|++.-..|+ ..+|..+.-.. .+.|+.+.|...+++.++.+|+ .+.+...+.+...+.|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca-l~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA-LKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH-hhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 77888888888888877622222 34555554444 6778888888888888888888 777778888888888888
Q ss_pred hhHHHHHHHHHhCCC
Q 038206 461 NDVGLVRKLMTDKGV 475 (614)
Q Consensus 461 ~~a~~~~~~m~~~g~ 475 (614)
-.|...++....++.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 888888887766654
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.49 E-value=0.00011 Score=75.45 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=89.1
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 324 (614)
......+..+..+.+.+... . .-..-|..+.+.|+..|+++.|+++|-+.. .++--|..|.++|+++.|.
T Consensus 742 ai~akew~kai~ildniqdq---k--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ---K--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh---c--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 33444444454444444332 1 112234455555666666666666654432 2333455556666666665
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038206 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404 (614)
Q Consensus 325 ~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (614)
++-.+. .|.......|.+-..-.-+.|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-
T Consensus 812 kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 812 KLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 555432 2222233334333333445555555555543331 1332 34555555555555555554320
Q ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 405 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
..-..|-..+-.-+ ...|++..|+.-|-+. .-|.+-.++|-..+.|++|.++-+
T Consensus 879 d~l~dt~~~f~~e~-e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKEL-EAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhHHHHHHHHHH-HhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 11122333344444 4445555555444332 234455566666666666666553
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=1.5e-05 Score=87.35 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=165.8
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR--------DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
-+.....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|++. .+. -|.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA-cqy---cd~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA-CQY---CDA 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH-HHh---cch
Confidence 3455778888999999999999999999877521 3457999998888889888999999987 432 232
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 038206 341 -ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD---AVIWRSLL 415 (614)
Q Consensus 341 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 415 (614)
..|..|..-|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++.+. ..-|. .....-..
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 5577889999999999999999999999776 56778999999999999999999999876 32232 33333333
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCcc
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 477 (614)
..- .++|+.+++..+|+..+...|+ -...|+.++++-.+.|..+.++.+|++....++.+
T Consensus 1608 qLE-Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1608 QLE-FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHH-hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333 6789999999999999999999 88999999999999999999999999999988765
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.0016 Score=62.97 Aligned_cols=295 Identities=14% Similarity=0.117 Sum_probs=191.6
Q ss_pred CChhhH-HHHHHHHHc--CCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh-
Q 038206 96 PNSFTW-NTLIRACAR--SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY- 171 (614)
Q Consensus 96 ~~~~~~-~~li~~~~~--~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 171 (614)
|+...| ...|.++++ . ++...|...+-.+......+-|......+.+.+...|+..++.-.|+..... .|+..
T Consensus 191 ~~~~dwls~wika~Aq~~~-~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFN-FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHh-cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 444434 333444433 3 5555555555545444444134556777778888999999999999987653 33322
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 172 ---INNSLIHFYASCGHLDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 172 ---~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
.|..| +.+.|+.+.-..+...+... ....|-.-........+++.|+.+-.+-.+.-+-+...+..--.+.
T Consensus 268 ~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 268 AMDLYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hHHHHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 23333 34667777766666655332 3444555555566677888888887766543222333444444567
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH-HHHH-hcCCH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSII-LGFA-LHGRA 320 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li-~~~~-~~g~~ 320 (614)
...++.++|.-.|...... -+.+...|.-|+..|...|++.+|.-.-+... ..+..+.+.+- ..+. ....-
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L----ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML----APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HhccchHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 7888999988888888764 34578899999999999999998866544322 12333333221 1111 12234
Q ss_pred HHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 038206 321 EAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (614)
++|.+++++- ..+.|+- -..+.+...|...|..+.+..+++... ...||...-+.|.+.+...+.+++|++.|
T Consensus 421 EKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 421 EKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6788888754 4467776 445566677889999999999999886 45689999999999999999999999988
Q ss_pred HhC-CCCC
Q 038206 400 SNM-PMKP 406 (614)
Q Consensus 400 ~~m-~~~p 406 (614)
... .+.|
T Consensus 495 ~~ALr~dP 502 (564)
T KOG1174|consen 495 YKALRQDP 502 (564)
T ss_pred HHHHhcCc
Confidence 754 4444
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0017 Score=69.56 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=177.1
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 262 (614)
-+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+. -|+..|.-+++++.+.|.+++-.+.+..+.
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 35666666666665544 57999999999999999999888765 377889999999999999999888888887
Q ss_pred HhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHH
Q 038206 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342 (614)
Q Consensus 263 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t 342 (614)
+. .-.| .+-+.||-+|+|.+++.+-+++.. -||+.-...+-.-|...|.++.|.-+|... .-
T Consensus 1161 kk---~~E~--~id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN 1222 (1666)
T KOG0985|consen 1161 KK---VREP--YIDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SN 1222 (1666)
T ss_pred Hh---hcCc--cchHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hh
Confidence 76 4444 345678889999998888777653 466666666677777788888887777654 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhc
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 422 (614)
|..|...+...|.+..|.+--+.. .+..+|.-+-.+|...+.+.-|. +-.+.+-....-..-|+.-| ...
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Y-q~r 1292 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYY-QDR 1292 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHH-Hhc
Confidence 666666777777777776543322 35667777777776655444332 11112223455566788888 888
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|-+++-+.+++..+.+... ....|.-|.-.|++- +.++..+-++..-
T Consensus 1293 GyFeElIsl~Ea~LGLERA-HMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERA-HMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred CcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9999988888887777666 677888888888765 4555555555443
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.40 E-value=7.6e-06 Score=78.92 Aligned_cols=191 Identities=9% Similarity=-0.000 Sum_probs=128.9
Q ss_pred CccccHHHHHHHHHHhcCCHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESM-PKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
.|.......+...+...++-+.+..-+++. .++ |..........+...|++++|+++++.- .+.....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~a 135 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLA 135 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHH
Confidence 555555544444443334555555555433 332 2222222223456679999999888532 3445566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH---YGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACC 419 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 419 (614)
..+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.+.+|..+|+++ ...++..+.+.+..+.
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~- 211 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH- 211 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH-
Confidence 77888999999999999999995 34444332 233344443345799999999999 3347888888888888
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh-hhHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW-NDVGLVRKLMTD 472 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 472 (614)
...|++++|++++.+..+.+|+ ++.+...++-+....|+. +.+.+.+..++.
T Consensus 212 l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999999998 889988899999999998 667788888765
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=7.8e-05 Score=81.93 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC-----hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHH
Q 038206 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD-----GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276 (614)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd-----~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (614)
..|-..|.-..+.++.++|.+++++....+.+. ...|.++++.-..-|.-+...++|+.+.+. ..--.+|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-----cd~~~V~ 1533 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-----CDAYTVH 1533 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-----cchHHHH
Confidence 344444555555555555555555544332111 112333333333333444444444444443 1223467
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc--HHH-HHHHHHHH
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--SIT-FVGVLSAC 350 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t-~~~ll~a~ 350 (614)
..|...|.+.+..++|-++|+.|.++ ....|...+..+.++++.+.|..++.+. .. .-|- .+- ..-....-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA-L~--~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA-LK--SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH-Hh--hcchhhhHHHHHHHHHHH
Confidence 77888888888888888888888743 5677888888888888888888888776 22 2233 222 22233334
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHhcCch
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM---PMKP--DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~ll~~~~~~~~~~ 425 (614)
.+.|+.+.|+.+|+.... ..+.....|+.+|++-.+.|+.+.++.+|++. ++.| =-..|.--+.-- .++|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE-k~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE-KSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH-HhcCch
Confidence 567888888888888875 44445677888888888888888888888876 2222 123444444433 566665
Q ss_pred HHHHHHHHHHH
Q 038206 426 VLSEEVAKQVI 436 (614)
Q Consensus 426 ~~a~~~~~~~~ 436 (614)
+.++.+=.++.
T Consensus 1688 ~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1688 KNVEYVKARAK 1698 (1710)
T ss_pred hhHHHHHHHHH
Confidence 55555544443
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.35 E-value=0.00018 Score=64.16 Aligned_cols=186 Identities=16% Similarity=0.086 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
...|.-+|.+.|+...|..-+++..+.-+-+..++..+...+...|..+.+.+.++...+. -+-+-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCccchhhhhhHHH
Confidence 3345556666666666666666665443333344444444445555555555555544443 223345666666666
Q ss_pred HhcCCHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHH
Q 038206 284 CKCGSLDIARQVFESMP-KRD----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVS 357 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~ 357 (614)
|..|++++|...|+... .|+ ..+|.-+.-+..+.|+.+.|.+.|++- .. ..|+. .+...+.....+.|++-
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra-L~--~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA-LE--LDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH-HH--hCcCCChHHHHHHHHHHhcccch
Confidence 66666666666666544 332 245555555555666666666666654 22 22322 44445555555666666
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (614)
.|..+++.... +..++..+.-..|..--+.|+-+.|-+.
T Consensus 191 ~Ar~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 191 PARLYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 66666665543 2235555544455555555555554443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=1.4e-05 Score=80.07 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=168.8
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEA 322 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 322 (614)
.+.|++..|.-.|+..++. -+-+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+
T Consensus 296 m~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 4677888888888888874 455678888888888888888888888887763 367777888888999999999
Q ss_pred HHHHHHHHhhhcCCC--------ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 323 ALKYFDRLVVEESFS--------PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 323 A~~l~~~m~~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
|++.|+.. .....+ ++..+-.. ..+.....+....++|-.+....+..+|..++.+|--.|--.|.+++
T Consensus 372 Al~~L~~W-i~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKW-IRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHH-HHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999876 332110 01100000 12223334556667777776666766788888999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 395 ALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 395 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|.+-|+.. .++| |..+||-|-..+ +...+.++|...|.+++++.|. -..+..-|.-.|...|.+++|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtL-AN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATL-ANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHh-cCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999987 6777 678999999999 9999999999999999999999 66666778889999999999999886544
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.0019 Score=74.37 Aligned_cols=329 Identities=10% Similarity=0.020 Sum_probs=168.9
Q ss_pred HHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------Cc--hhHHHHHHHH
Q 038206 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV------SD--VYINNSLIHF 179 (614)
Q Consensus 108 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~ 179 (614)
+... |.++.+...+..+...... .+..........+...|+++++...+....+.--. +. ......+...
T Consensus 384 l~~~-g~~~~l~~~l~~lp~~~~~-~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 384 LFNQ-GELSLLEECLNALPWEVLL-ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHhc-CChHHHHHHHHhCCHHHHh-cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3344 6666666655554221111 12222223333445667888888777766543111 11 1122223344
Q ss_pred HHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHhcCChhHHHHHHHHhhhc---c-CCC--hhhHHHHHHHH
Q 038206 180 YASCGHLDLANKVFDNMLE----RSL----VSWNVMIDAFVQFGEFDSALKLFRRMQIL---F-EPD--GYTFQSITSAC 245 (614)
Q Consensus 180 ~~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~-~pd--~~t~~~ll~a~ 245 (614)
+...|++++|...+++... .+. ..++.+...+...|++++|...+.+.... . .+. ..+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5667888888877776422 121 23455566677788888888888777643 1 111 12333444556
Q ss_pred HhhCchhHHHHHHHHHHHhccC-CCCc---cccHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--CHHHHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDH-SLVT---DVLVNNSLIDMYCKCGSLDIARQVFESMPK------R--DLTSWNSIILG 313 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~ 313 (614)
...|+++.|...+......... +... ....+..+...+...|++++|...+++... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 6778888887777666553211 2111 122344455556667888877777665431 1 12233344555
Q ss_pred HHhcCCHHHHHHHHHHHhhhc-CCCccHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHH
Q 038206 314 FALHGRAEAALKYFDRLVVEE-SFSPNSITF-----VGVLSACNHRGMVSEGRDYFDVMINEYNITPV---LEHYGCLVD 384 (614)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~~-g~~p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~ 384 (614)
+...|+.++|.+.+.+. ... ........+ ...+..+...|+.+.+..++...... ..... ...+..+..
T Consensus 622 ~~~~G~~~~A~~~l~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 622 SLARGDLDNARRYLNRL-ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHcCCHHHHHHHHHHH-HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 66777777777777665 321 000000001 01112334467777777766554221 10000 011234555
Q ss_pred HHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 385 LLARAGNIDEALHLVSNM-------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+...|+.++|...+++. +..++ ..+...+-.++ ...|+.++|...+.++.+....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~-~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY-WQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhCc
Confidence 666777777777666654 11121 12334444445 6677777777777777766544
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.32 E-value=0.00033 Score=74.68 Aligned_cols=397 Identities=11% Similarity=-0.025 Sum_probs=217.7
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
..+|..+....+. ++.. ..|..|-..|.. .+...|.+.|+...+ -|..++......|++. ..++.|..+.-..
T Consensus 476 ~al~ali~alrld-~~~a-paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 476 LALHALIRALRLD-VSLA-PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHhcc-cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHHH
Confidence 5666666666666 5534 789999999988 888899999988766 4677888999999999 9999999883222
Q ss_pred HHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH
Q 038206 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205 (614)
Q Consensus 126 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 205 (614)
-+......-...|..+--.+...+++..+..-|+...+.. +.|...|..|..+|.++|+...|.++|++...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 2221000111223333334566778888888888877765 447888999999999999999999999887554433322
Q ss_pred -H--HHHHHHhcCChhHHHHHHHHhhhc---cCC----ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhc----cCCCCc
Q 038206 206 -V--MIDAFVQFGEFDSALKLFRRMQIL---FEP----DGYTFQSITSACAGLATLSLGMWAHAYILRHC----DHSLVT 271 (614)
Q Consensus 206 -~--li~~~~~~g~~~~A~~~~~~m~~~---~~p----d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~----~~g~~~ 271 (614)
. ....-+..|.+.+|+..+...... -.| -..++.-+...+...|-...+..+++..++.. ......
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 223346689999999988877543 111 11122222222222222222222222222110 001111
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHH--HHHHHHHH-HHhcCCH---H---HHHHHHHHHhhhcCCCccHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT--SWNSIILG-FALHGRA---E---AALKYFDRLVVEESFSPNSIT 342 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~~g~~p~~~t 342 (614)
+...|-. ..+|..+|-... ||.+ .+..++.. .-..+.. + -+.+.+-. ......+..+
T Consensus 712 ~~~~Wi~----------asdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~---hlsl~~~~~~ 777 (1238)
T KOG1127|consen 712 DRLQWIV----------ASDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA---HLSLAIHMYP 777 (1238)
T ss_pred hHHHHHH----------HhHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH---HHHHhhccch
Confidence 1112211 123334444433 3321 12222221 1111111 1 01111110 0001111223
Q ss_pred HHHHHHHHh-------ccC-CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038206 343 FVGVLSACN-------HRG-MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWR 412 (614)
Q Consensus 343 ~~~ll~a~~-------~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~ 412 (614)
+..+...|. ..+ +...|..-+...++ --.-+...|+.|--. +..|.+.-|..-|-+- ..+.+..+|.
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 222222211 111 12244444444432 112344556555433 5556666665544333 2233677888
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.+-..+ .++.+++.|...|.....+.|. |...|......-...|+.-++..+|..
T Consensus 855 NlgvL~-l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 855 NLGVLV-LENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccceeE-EecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 877777 8888999999999999999988 888887766666677777777777654
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.27 E-value=0.0014 Score=68.46 Aligned_cols=408 Identities=14% Similarity=0.111 Sum_probs=240.1
Q ss_pred HHHhhhcCCCCChhhHHHHH---HhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC-
Q 038206 21 FNNNRNEGSFNNHSSLLSSL---TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN- 95 (614)
Q Consensus 21 ~~~m~~~g~~p~~~~~~~~l---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~- 95 (614)
+.+++...+.-|...|-.+. ..|+....+-+.+++....-+. . . ..|+.+-..|+. |.-..|..+.+.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~--~-e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-E--H-ERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-h--H-HHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 34444444666666655544 3444444444444444443333 2 3 678888888888 888889888876532
Q ss_pred ---CChhhHHHHH-HHHHcCCCCchHHHHHHHHHHHc--CCC-CCCcchHHHHHHHHHcc-----------CCcHHHHHH
Q 038206 96 ---PNSFTWNTLI-RACARSVDAKPQAIVLFQRMIEQ--GNV-LPDKHTFPFALKACAYL-----------FAFSQGKQA 157 (614)
Q Consensus 96 ---~~~~~~~~li-~~~~~~~~~~~~A~~~~~~m~~~--~~~-~p~~~t~~~ll~~~~~~-----------~~~~~a~~~ 157 (614)
|+..+--.|+ ..|.++.+..+++++.-.+.... +.. ......|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 4334433333 34455547777877776666551 110 02233444444443321 124567788
Q ss_pred HHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccC
Q 038206 158 HAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNM----LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE 232 (614)
Q Consensus 158 ~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 232 (614)
++..++.+. .|++..| |---|+..++++.|.....+. ...+...|..+.-.+...+++.+|+.+.+.......
T Consensus 467 le~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 888888763 3333333 333477788899998887765 334778999999999999999999999887765522
Q ss_pred CChhhHHHHHHHHHhhCchhHHHH-------HHH----------HHHHhc-cCCCC-------ccccHHHHHHHHHHhcC
Q 038206 233 PDGYTFQSITSACAGLATLSLGMW-------AHA----------YILRHC-DHSLV-------TDVLVNNSLIDMYCKCG 287 (614)
Q Consensus 233 pd~~t~~~ll~a~~~~~~~~~~~~-------~~~----------~~~~~~-~~g~~-------~~~~~~~~li~~y~~~g 287 (614)
-|..-...-+..-...++.+++.. +++ ...... ..|+. ....++..+.......+
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 211111111111111222222221 111 111100 00111 01223333322222111
Q ss_pred ---CHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHH
Q 038206 288 ---SLDIARQVFESMPKRD------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVS 357 (614)
Q Consensus 288 ---~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~ 357 (614)
..+.....+...+.|+ ...|......+.+.+..++|...+.+. . ++.|-. ..|...-..+...|..+
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea-~--~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA-S--KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-H--hcchhhHHHHHHhhHHHHHHHhhH
Confidence 1111112222222333 235666777888899999998887765 2 233433 34444445566788999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALH--LVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVA 432 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~ 432 (614)
+|.+.|.... -+.| ++...+++..++.+.|+..-|.+ ++..+ .+.| +...|..+-..+ .+.|+.+.|-+.|
T Consensus 702 EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~-k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 702 EAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF-KKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccchHHHHHHH
Confidence 9999998774 5666 46778899999999998877777 77776 5566 678999999999 9999999999999
Q ss_pred HHHHHhcCC
Q 038206 433 KQVIESEGG 441 (614)
Q Consensus 433 ~~~~~~~~~ 441 (614)
....++...
T Consensus 778 ~aa~qLe~S 786 (799)
T KOG4162|consen 778 QAALQLEES 786 (799)
T ss_pred HHHHhhccC
Confidence 999998766
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=0.0014 Score=75.42 Aligned_cols=326 Identities=11% Similarity=-0.005 Sum_probs=199.0
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCC---h-----hHHHHHHHHHHhc
Q 038206 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML----ERS---L-----VSWNVMIDAFVQF 214 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~---~-----~~~~~li~~~~~~ 214 (614)
..|+++.+...+..+.......+..........+...|++++|...++... ..+ . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 445666555555443211111222333444555667899999988887651 111 1 1112233455679
Q ss_pred CChhHHHHHHHHhhhc-cCCCh----hhHHHHHHHHHhhCchhHHHHHHHHHHHhccC-CC-CccccHHHHHHHHHHhcC
Q 038206 215 GEFDSALKLFRRMQIL-FEPDG----YTFQSITSACAGLATLSLGMWAHAYILRHCDH-SL-VTDVLVNNSLIDMYCKCG 287 (614)
Q Consensus 215 g~~~~A~~~~~~m~~~-~~pd~----~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g 287 (614)
|++++|...+++.... ...+. .+...+...+...|+++.+...+......... |- .........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987664 22222 23344455567889999999988887754211 11 111234556677888999
Q ss_pred CHHHHHHHHhcCCC-------C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc--CCCcc--HHHHHHHHHHHhc
Q 038206 288 SLDIARQVFESMPK-------R----DLTSWNSIILGFALHGRAEAALKYFDRLVVEE--SFSPN--SITFVGVLSACNH 352 (614)
Q Consensus 288 ~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~~p~--~~t~~~ll~a~~~ 352 (614)
+++.|...+++... + ....+..+...+...|++++|...+.+. ... ...+. ...+..+......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG-LEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-HHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999988776431 1 1223444555667789999999998876 321 11122 2334445556778
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHh
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHY-----GCLVDLLARAGNIDEALHLVSNMPMK--PDA----VIWRSLLDACCKK 421 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 421 (614)
.|+.++|.+.+.....-..-......+ ...+..+...|+.+.|.+.+...... ... ..+..+..++ ..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~-~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ-IL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH-HH
Confidence 899999999988874421111111111 11234456689999999998776211 111 1133455555 77
Q ss_pred cCchHHHHHHHHHHHHhc----CCC-CchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 422 HASVVLSEEVAKQVIESE----GGI-CSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
.|+.++|...++++.... ..+ ...++..+..+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987752 111 12456678889999999999999999887643
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0075 Score=61.25 Aligned_cols=404 Identities=11% Similarity=0.033 Sum_probs=216.8
Q ss_pred HHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHH--HHHH--HcC
Q 038206 40 LTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTL--IRAC--ARS 111 (614)
Q Consensus 40 l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~l--i~~~--~~~ 111 (614)
++.....++. .+....++..+ + .+ . .....=+-.... +.+++|+++.+.-.. ..+++.. =.+| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-p-dd-~-~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-P-DD-E-DAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-C-Cc-H-hhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHc
Confidence 3444555555 33333444444 2 44 4 444444444445 899999977655432 1122222 2333 355
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHH
Q 038206 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLAN 190 (614)
Q Consensus 112 ~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 190 (614)
+..++|+..++ |..+.|..+...-...|.+.+++++|..+|..+.+++.+- +...-..++.+- -.-.+.
T Consensus 93 -nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 93 -NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred -ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH
Confidence 78889988877 3231233345555566788999999999999998877432 222222232221 111222
Q ss_pred HHHhhcCCCChhHHHHHH---HHHHhcCChhHHHHHHHHhhh----c-cCCCh---------h-hHHHHHHHHHhhCchh
Q 038206 191 KVFDNMLERSLVSWNVMI---DAFVQFGEFDSALKLFRRMQI----L-FEPDG---------Y-TFQSITSACAGLATLS 252 (614)
Q Consensus 191 ~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~----~-~~pd~---------~-t~~~ll~a~~~~~~~~ 252 (614)
+.+..+.....+|..+- -.+...|++.+|++++....+ . ..-|. . .-..+.-++-..|+.+
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 35555444444554443 456778999999999998822 1 11110 0 1122333456789999
Q ss_pred HHHHHHHHHHHhccCCCCcccc----HHHHHHHHHHhcCCHH-HHHHHHhcCCCCCH--------------HHH-HHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVTDVL----VNNSLIDMYCKCGSLD-IARQVFESMPKRDL--------------TSW-NSIIL 312 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~--------------~~~-~~li~ 312 (614)
++..++..+++. .++|.. .-|.|+.+-.-..-.+ .++..|+.....+. +.. +.++.
T Consensus 242 ea~~iy~~~i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 242 EASSIYVDIIKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred HHHHHHHHHHHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 334432 2333332221111111 23333333322111 111 22233
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHc
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH--RGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARA 389 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 389 (614)
.| .+..+.+.++-... .+..|. ..+-.++..+.+ ......+.+++..... +.+-. ..+.-.++......
T Consensus 318 l~--tnk~~q~r~~~a~l---p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASL---PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HH--hhhHHHHHHHHHhC---CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhc
Confidence 23 23344444444322 233443 344455555433 2246667777776644 33333 45556778888899
Q ss_pred CCHHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc--CCCCch----hHHHHHHHH
Q 038206 390 GNIDEALHLVS--------NMP-MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE--GGICSG----VYVLLSRVY 454 (614)
Q Consensus 390 g~~~~A~~~~~--------~m~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~----~~~~l~~~~ 454 (614)
|+++.|.+++. .++ +.-...+..+++.-+ .+.++.+.|..++.+++..- -.+... ++.-+...-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~-~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALY-YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHH-HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 99999999988 331 222233444455555 66677777777777766431 111222 333344445
Q ss_pred hhcCChhhHHHHHHHHHhC
Q 038206 455 ASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~~ 473 (614)
.+.|+-++|...++++.+.
T Consensus 469 lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HhcCchHHHHHHHHHHHHh
Confidence 6779999999999998874
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.0013 Score=68.80 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=103.2
Q ss_pred CCCCCCchHHHHHHHHH--HHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC-------
Q 038206 60 ALPQQHKTLLIYSRIIH--FASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------- 129 (614)
Q Consensus 60 g~~~~~~~~~~~~~li~--~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~------- 129 (614)
|+..-| . .+-.++++ +|.. |+.+.|.+-...+. +...|..|-+.+.+. ++.+-|.-.+-.|....
T Consensus 720 gle~Cd-~-~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT-~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 720 GLENCD-E-STRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKT-RRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred CccccC-H-HHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhh-ccccHHHHhhhhhhhhhhHHHHHH
Confidence 444234 5 66666766 5666 99999988776665 456799999999988 88887776666654311
Q ss_pred -CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHH
Q 038206 130 -NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVSWNVM 207 (614)
Q Consensus 130 -~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~l 207 (614)
...|+ .+=..+.-.....|.+++|+.+|.+..+.+ .|=..|-..|.|++|.++-+.-..- =..||..-
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 11132 222333334467899999999999987754 3445677889999999987643211 12356666
Q ss_pred HHHHHhcCChhHHHHHHHHhh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~ 228 (614)
..-+-..++.+.|++.|++..
T Consensus 865 A~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcC
Confidence 666667788999999888764
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=7.4e-05 Score=77.05 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=174.0
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
+++|-...-..+...+.++|-...|..+|++ ...|.-.|.+|+..|+..+|..+..+- .+ -+||..-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~-le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQE-LE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHH-hc--CCCcchhHHHhh
Confidence 4556666777889999999999999999997 457888899999999999999998865 33 688999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCch
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 425 (614)
+..-...-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| -..+|-.+-.+. .+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~A-Lqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAA-LQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHH-HHHhhh
Confidence 9888888899999999877542 1111222223478999999988764 4455 566888777666 788999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHH
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (614)
+.|.+.|.......|+ +...|+.+..+|.+.|+-.+|...+++..+-+..+ |-.+.+..+. .- .-+..++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENymlv--sv--dvge~ed 605 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYMLV--SV--DVGEFED 605 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhhh--hh--hcccHHH
Confidence 9999999999999999 99999999999999999999999999988766443 4444443322 11 1356677
Q ss_pred HHHHHHHHHHHHhhCCccC
Q 038206 506 IYGFLDLIDEKLKSRGYTP 524 (614)
Q Consensus 506 ~~~~~~~l~~~m~~~g~~p 524 (614)
+...+.++.. |+..+-.|
T Consensus 606 a~~A~~rll~-~~~~~~d~ 623 (777)
T KOG1128|consen 606 AIKAYHRLLD-LRKKYKDD 623 (777)
T ss_pred HHHHHHHHHH-hhhhcccc
Confidence 7776666554 55544433
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00096 Score=61.61 Aligned_cols=303 Identities=14% Similarity=0.075 Sum_probs=159.9
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHHhc
Q 038206 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNV-MIDAFVQF 214 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~ 214 (614)
+++++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4555555555666666666665554443 22444455566666666667777666666632 22222211 12344556
Q ss_pred CChhHHHHHHHHhhhccCCChhhHHHHHHHH--HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 215 GEFDSALKLFRRMQILFEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 215 g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
+.+.+|+.+...|... |+...-..-+.+. -..+++..++.+.++.-. ..+..+.+...-...+.|+++.|
T Consensus 92 ~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred cccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------CCccchhccchheeeccccHHHH
Confidence 6777777777766532 1111111111111 122333333333322211 12233333334444566666666
Q ss_pred HHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 293 RQVFESMPK----RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 293 ~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.+-|+...+ .....||.-+..| +.|+.+.|+++..++ .+.|++--.. ++ .|...++.++ +
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEI-ieRG~r~HPE-lg--------IGm~tegiDv-----r 227 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEI-IERGIRQHPE-LG--------IGMTTEGIDV-----R 227 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHH-HHhhhhcCCc-cC--------ccceeccCch-----h
Confidence 666665542 2334555444333 456666666666666 5555432110 00 0000000000 0
Q ss_pred hcCCCCChh-------HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 369 EYNITPVLE-------HYGCLVDLLARAGNIDEALHLVSNMP----MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 369 ~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
.--.|-.. .+|.-...+-+.|+++.|.+-+..|| .+.|.+|...+.-. ...+++..+.+-+.-+++
T Consensus 228 -svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 228 -SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM--NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred -cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh--cccCCccccHHHHHHHHh
Confidence 00001111 22333334567899999999999995 23567777665322 445677778888888888
Q ss_pred hcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.+|- ...||..++-.|++..-++-|..++-+
T Consensus 305 ~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 305 QNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8886 578999999999999999999988854
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=0.00027 Score=66.85 Aligned_cols=180 Identities=11% Similarity=0.002 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhc-CCCccH-HHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMPK--RD-L---TSWNSIILGFALHGRAEAALKYFDRLVVEE-SFSPNS-ITFVG 345 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~p~~-~t~~~ 345 (614)
..+-.+...|.+.|++++|...|+++.+ |+ . .+|..+...|.+.|++++|+..++++ .+. .-.|.. .++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF-IRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHCcCCCchHHHHHH
Confidence 3445555556666666666666665442 21 1 24555556666666666666666665 321 111111 12222
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038206 346 VLSACNHR--------GMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416 (614)
Q Consensus 346 ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 416 (614)
+-.++... |+.++|.+.|+.+.+. .|+ ...+..+..... ...... .....+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 22233322 4555666666665542 222 111111111000 000000 00112334
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCC-C-CchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGG-I-CSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+ ...|+++.|...++++++..|+ | ....+..+..+|.+.|++++|...++.+..+
T Consensus 175 ~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FY-LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HH-HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45 7789999999999999998765 1 2467889999999999999999999887654
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.16 E-value=0.0041 Score=58.76 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=93.7
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES---MPKRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A 323 (614)
..|+...+......+++. .+.|...+..-..+|...|++..|..=++. +...|..+.--+-.-+...|+.+.+
T Consensus 167 ~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred cCCchhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 344444444444444442 344555666666666666666666544433 2334555555555555666666666
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHH-------------HHHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHH
Q 038206 324 LKYFDRLVVEESFSPNSITFVGVL-------------SACNHRGMVSEGRDYFDVMINEYNITPV-----LEHYGCLVDL 385 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~~~t~~~ll-------------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~ 385 (614)
+...++- ..+.||....-..- ......+.+.++.+-.+...+. .|. ...+..+-.+
T Consensus 243 L~~iREC---LKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 243 LKEIREC---LKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHH---HccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 6666544 22555552211100 1112234444444444444331 222 1223344455
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 386 LARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+...|++.+|++...+. .+.|| +.++.-=..+| .-...++.|+.-|+.+.+.++.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~-l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY-LGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhcCcc
Confidence 55666666666665554 44454 55555555555 5555666666666666666655
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0021 Score=64.35 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|+++.|...|-+... +|.+.|+-=..+|+.. |++++|++=-.+-++.. |+ ...|+....++...|++++|..
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~-~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL-GSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHH-hhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHHHHHH
Confidence 899999999976543 5778888888899999 99999887766666655 55 3578888888888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
-|..-++.. +.+...++-|.+++
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhh
Confidence 988877764 44566777788777
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0022 Score=59.33 Aligned_cols=278 Identities=11% Similarity=0.094 Sum_probs=153.8
Q ss_pred HHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHH-HHHHHcc
Q 038206 74 IIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA-LKACAYL 148 (614)
Q Consensus 74 li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~l-l~~~~~~ 148 (614)
.+.-+.+ .++++|.+++..-.+ ++....+.+-..|... .++..|-+.|+++-... |...-|..- ...+-+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHh
Confidence 3333344 567777776654433 2455566666666666 77777777777776554 444333221 2233455
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIH--FYASCGHLDLANKVFDNML-ERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
+.+..|..+...|... ++...-..-+. ..-..+|+..+..+.++.+ +.+..+.+...-..-+.|++++|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5666666666655432 11111111111 1223567777777777776 3455555555555667777777777777
Q ss_pred Hhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc-------------cc--------cHHHHHHH--
Q 038206 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-------------DV--------LVNNSLID-- 281 (614)
Q Consensus 226 ~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~-------------~~--------~~~~~li~-- 281 (614)
...+- ---....|+..+. ..+.++...|.+....++.. |+.. |+ ..-+.++.
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR---G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER---GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh---hhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 76654 2222345554443 33556667777776666665 4322 11 11223333
Q ss_pred -----HHHhcCCHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 038206 282 -----MYCKCGSLDIARQVFESMPKR-----DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351 (614)
Q Consensus 282 -----~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~ 351 (614)
.+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+ .... +-...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL-L~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL-LQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH-HhcC-CCChHHHHHHHHHHh
Confidence 345678888888888888743 566654432221 234444444444333 2221 123478888888888
Q ss_pred ccCCHHHHHHHHHH
Q 038206 352 HRGMVSEGRDYFDV 365 (614)
Q Consensus 352 ~~g~~~~a~~~~~~ 365 (614)
+..-++.|-+++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 88888888777654
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.0051 Score=64.64 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC-----------CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN-----------PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
.+|..+..|+.+ .+++-|.-.+..|.. .|..--.+-..+++-.-|..++|..+|++..+.+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D------- 830 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD------- 830 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-------
Confidence 789999999999 888888887777763 1111112222333322288999999999887643
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------------
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER----------------- 199 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------------- 199 (614)
.+=+.|-..|.+++|.++-+.=-+-.+. .||-....-+-..+|.+.|++.|++...+
T Consensus 831 ---LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 ---LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3445667789999998876543222222 34444455555678888888888765221
Q ss_pred ------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccc
Q 038206 200 ------SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273 (614)
Q Consensus 200 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (614)
|...|.-....+-..|+.+.|+.+|...+. |-++.+..+-.|+.++|-++-++- -|.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es---------gd~ 967 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES---------GDK 967 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc---------ccH
Confidence 333344344444456667777777766542 334444455566666665554322 244
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m 299 (614)
...-.|..+|-..|++.+|..+|-+.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777777777777654
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.12 E-value=0.00035 Score=63.62 Aligned_cols=118 Identities=10% Similarity=0.074 Sum_probs=91.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc--hHHH
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS--VVLS 428 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--~~~a 428 (614)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+-.++....|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566666666666654 33457888888888999999999999888877 4455 556666666553255566 5899
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.++++++++.+|+ +..++..+...+.+.|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998 8888999999999999999999999988764
No 110
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=5.7e-06 Score=51.49 Aligned_cols=34 Identities=32% Similarity=0.681 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
+||+||.+|++.|++++|.++|++| ...|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M-~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEM-LERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCC
Confidence 7999999999999999999999999 889999973
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=0.00028 Score=64.18 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=117.0
Q ss_pred HHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHH
Q 038206 75 IHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 75 i~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
+.+|.. |+++........+..|. ..+... ++.++++..++...+.+ + .|...|..+...+...|+++.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~-~~~~~~i~~l~~~L~~~-P-~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQ-QTPEAQLQALQDKIRAN-P-QNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCc-hhHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHCCCHHH
Confidence 345666 88777655544332221 012234 77788888888888876 3 467788889999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCC--HHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 154 GKQAHAHIFKRGLVSDVYINNSLIHF-YASCGH--LDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
|...++...+.. +.+..++..+..+ |...|+ .++|.+++++..+. +..++..+...+.+.|++++|+..|+++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999876 4467778888876 567787 59999999998443 6678999999999999999999999999
Q ss_pred hhccCCChhhHHHH
Q 038206 228 QILFEPDGYTFQSI 241 (614)
Q Consensus 228 ~~~~~pd~~t~~~l 241 (614)
.+..+|+......+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 88767766554433
No 112
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.1e-05 Score=50.22 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 135 (614)
++||++|.+|++. |++++|.++|++|.+.|+. ||.
T Consensus 1 ~~~n~li~~~~~~-~~~~~a~~~~~~M~~~g~~-p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKA-GRVEEALELFKEMLERGIE-PDV 35 (35)
T ss_pred CcHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCC-CCC
Confidence 4788888888888 8888888888888888877 763
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.044 Score=59.26 Aligned_cols=142 Identities=10% Similarity=0.174 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 383 (614)
...|+.+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-..++....++ .-.|.+.+ .||
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHH
Confidence 457999999999999999999888543 25577999999999999999999988877653 56666654 899
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH
Q 038206 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 463 (614)
-+|++.+++.+-++++. -||..-...+-.-| ...|.++.|.-+|.. .+.|.-|...+...|.++.|
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrc-f~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRC-FEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHH-hhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888774 47888888888888 888889888877763 45666677777777777776
Q ss_pred HHHHHH
Q 038206 464 GLVRKL 469 (614)
Q Consensus 464 ~~~~~~ 469 (614)
...-++
T Consensus 1240 VD~aRK 1245 (1666)
T KOG0985|consen 1240 VDAARK 1245 (1666)
T ss_pred HHHhhh
Confidence 655443
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.95 E-value=0.00079 Score=63.62 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=121.4
Q ss_pred CCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccc---cHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H-
Q 038206 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV---LVNNSLIDMYCKCGSLDIARQVFESMPK--RD-L- 304 (614)
Q Consensus 232 ~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~- 304 (614)
......+......+...|+++.|...++.+.+. .+.+. ..+..+...|.+.|++++|...|+++.+ |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 344556777778889999999999999999875 22222 4667788999999999999999998863 21 1
Q ss_pred --HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 305 --TSWNSIILGFALH--------GRAEAALKYFDRLVVEESFSPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 305 --~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
.++..+..++.+. |+.++|.+.|+++ .. ..|+.. ....+... .. ..... .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~--~~p~~~~~~~a~~~~-~~---------~~~~~-~----- 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IR--RYPNSEYAPDAKKRM-DY---------LRNRL-A----- 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HH--HCCCChhHHHHHHHH-HH---------HHHHH-H-----
Confidence 2455555555554 7789999999988 43 244442 22111110 00 00001 0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNM----PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
.....+...|.+.|++++|...+++. |-.| ....|..+..++ ...|++++|...++.+....|
T Consensus 167 ---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~-~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 ---GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY-LKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCC
Confidence 01124666788889999988888776 2223 346778888888 888999999988887766544
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.95 E-value=0.019 Score=54.46 Aligned_cols=293 Identities=9% Similarity=0.051 Sum_probs=168.4
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHH---HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHH-HHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIR---ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF-ALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~ 156 (614)
|++.+|+.-|....+-|+..|-++.+ .|... |+...|+.=+...++.. ||-..-.. -...+.+.|.++.|.+
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLELK---PDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-cCCccchhhHHHHHhcC---ccHHHHHHHhchhhhhcccHHHHHH
Confidence 66666666666666655555555442 45555 66666666666555543 55321100 0113456666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
=|+.+++...... ....++.+.--.++-+.+ -..+..+.-.|+...|+.....+.+..+-|..
T Consensus 128 DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 128 DFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 6666665532111 111111111111111111 12333445567777777777777665455666
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHH----HHHHH
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLT----SWNSI 310 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~----~~~~l 310 (614)
.+..-..++...|.+..|..-...+.+. . ..++...--+-..+...|+.+.++...++..+ ||.. .|..+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askL---s-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKL---S-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc---c-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 6666666777777777776666666554 2 22344455566677777888887777776653 3321 12211
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHH---HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hh
Q 038206 311 ---------ILGFALHGRAEAALKYFDRLVVEESFSPNSIT---FVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LE 377 (614)
Q Consensus 311 ---------i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 377 (614)
+......+++.++++-.+.. .+.......++ +..+-.++...+.+.+|++.-.++. .+.|+ +.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~v-lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~ 342 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKV-LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHH
Confidence 12345577888888888776 33221111233 3344455677899999999888885 55665 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
++---.++|.-...+++|+.-|+..
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8777788888888899999888776
No 116
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.6e-05 Score=49.07 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
.+||++|.+|++.|+++.|.++|++| ++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M-~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEM-KEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCC
Confidence 46777777777777777777777777 6777766
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00029 Score=60.51 Aligned_cols=92 Identities=5% Similarity=-0.164 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
+..+...+...|++++|...|+.. ...| +...|..+...+ ...|++++|...|+++.+.+|. ++..+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTW-MMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 334555556666666666666654 3333 445555555555 6666666666666666666666 66666666666666
Q ss_pred cCChhhHHHHHHHHHh
Q 038206 457 ARRWNDVGLVRKLMTD 472 (614)
Q Consensus 457 ~g~~~~a~~~~~~m~~ 472 (614)
.|+.++|...++...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666544
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.00057 Score=70.77 Aligned_cols=215 Identities=14% Similarity=0.161 Sum_probs=158.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 038206 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACA 246 (614)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~ 246 (614)
+|-.-.-..+...+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 444445567788899999999999999875 5688899999999999999998887766 4888888888888777
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHH
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 323 (614)
...-++.+.++....... .-..+.......++++++.+.|+.-.+ --..+|-..-.+..+.+++..|
T Consensus 469 d~s~yEkawElsn~~sar----------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR----------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH----------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777777777766554432 111222222336888888888875442 2456787777778888888888
Q ss_pred HHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 324 LKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.+.|..- -...||. ..|+.+-.+|.+.++..+|...+.+..+ .+ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rc---vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRC---VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHH---hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888754 2356665 6788888888888888888888888876 44 334555666677778888888888888776
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.013 Score=58.52 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=128.1
Q ss_pred CHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 038206 288 SLDIARQVFESMP------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 288 ~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
++.+++..-+.++ .++...+...+.+.........+..++.+- .. -.-...-|..-+ .+...|.++.|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKR--SK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHH--hC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 4566666666666 235556666666544433333333333322 22 111223344444 3456789999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
.+..+.+ ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+-.++ .+.|+..+|..+++......
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al-l~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL-LKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH-HhcCChHHHHHHHHHHhhcC
Confidence 9999875 45557888888899999999999999999988 55676 66777788888 99999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|. |+..|..|..+|...|+..++.....++.
T Consensus 405 p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 PE-DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CC-CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99 99999999999999999999888876643
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.91 E-value=0.00046 Score=59.31 Aligned_cols=113 Identities=10% Similarity=-0.058 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038206 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRS 413 (614)
Q Consensus 336 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 413 (614)
+.|+. +.....++...|++++|...|..... --+.+...|..+..++.+.|++++|...|+.. ...| +...|..
T Consensus 22 ~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44554 34455667788888888888888764 22336777888888888888888888888877 3444 5667777
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
+..++ ...|+.++|...|++.++..|. ++..+.....+.
T Consensus 98 lg~~l-~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~ 136 (144)
T PRK15359 98 TGVCL-KMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQ 136 (144)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 77777 8888999999999999888888 777776554444
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=2.6e-05 Score=48.10 Aligned_cols=32 Identities=44% Similarity=0.708 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
.+||.+|.++++. |+++.|.++|++|.+.|+.
T Consensus 2 ~ty~~ll~a~~~~-g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 2 HTYNALLRACAKA-GDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred cHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC
Confidence 4677777777777 7777777777777777665
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00082 Score=61.31 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=125.8
Q ss_pred hCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC
Q 038206 59 TALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134 (614)
Q Consensus 59 ~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~ 134 (614)
....|.| . .+ ..+-..|-. |+-+.+..+...... .|....+..+....++ |++.+|+..|++..... + +|
T Consensus 60 ~~~~p~d-~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~-g~~~~A~~~~rkA~~l~-p-~d 133 (257)
T COG5010 60 VLRNPED-L-SI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN-GNFGEAVSVLRKAARLA-P-TD 133 (257)
T ss_pred HhcCcch-H-HH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh-cchHHHHHHHHHHhccC-C-CC
Confidence 3444344 4 55 333333333 877777777766432 3555667788899999 99999999999998765 4 78
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHH
Q 038206 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAF 211 (614)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~ 211 (614)
..+|+.+--+|.+.|+++.|+.-|.+..+.. .-++.+.|.|.-.|.-.|+.+.|..++... +..|...-..+....
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 8999999999999999999999999998864 335666777877888899999999999876 334777888888888
Q ss_pred HhcCChhHHHHHHHHhh
Q 038206 212 VQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~ 228 (614)
...|++++|..+-..-.
T Consensus 213 ~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 GLQGDFREAEDIAVQEL 229 (257)
T ss_pred hhcCChHHHHhhccccc
Confidence 99999999988876554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0031 Score=57.60 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038206 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387 (614)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (614)
.-+-..+...|+-+....+.... ...-.-|..............|++.+|...|.+... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~--~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKS--AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhh--hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 33445566666666666666543 111122223333456666677777777777777753 55567777777777777
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHH
Q 038206 388 RAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 465 (614)
+.|++++|..-|.+. .+.| +....+.|...+ .-.|+.+.|..++......++. |+..-..|..+-...|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~-~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSL-LLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHH-HHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 777777777666554 3333 334455555555 6667777777777777776666 66666666667777777777766
Q ss_pred HH
Q 038206 466 VR 467 (614)
Q Consensus 466 ~~ 467 (614)
+.
T Consensus 224 i~ 225 (257)
T COG5010 224 IA 225 (257)
T ss_pred hc
Confidence 54
No 124
>PLN02789 farnesyltranstransferase
Probab=97.83 E-value=0.0038 Score=61.21 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHhcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccC
Q 038206 282 MYCKCG-SLDIARQVFESMP---KRDLTSWNSIILGFALHGRA--EAALKYFDRLVVEESFSP-NSITFVGVLSACNHRG 354 (614)
Q Consensus 282 ~y~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g 354 (614)
.+.+.| ++++++..++++. .++..+|+..-..+.+.|+. ++++.+++++ .. ..| |..+|.....++.+.|
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka-l~--~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI-LS--LDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH-HH--hCcccHHHHHHHHHHHHHhh
Confidence 333344 3455555555443 22344455443333334432 4455555555 22 222 3345555555555556
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHhc---
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA---GN----IDEALHLVSN-MPMKP-DAVIWRSLLDACCKKH--- 422 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~--- 422 (614)
+++++.+.++.+++. . .-+...|+.....+.+. |. .+++.++..+ +...| |...|+.+...+ ...
T Consensus 157 ~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll-~~~~~~ 233 (320)
T PLN02789 157 GWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF-KDDKEA 233 (320)
T ss_pred hHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hcCCcc
Confidence 666666666666542 1 12333343333333332 22 2345555533 34445 567787777777 552
Q ss_pred -CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC------------------ChhhHHHHHHHH
Q 038206 423 -ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR------------------RWNDVGLVRKLM 470 (614)
Q Consensus 423 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 470 (614)
++..++...+.+..+.++. ++.....|++.|+... ..++|.++++.+
T Consensus 234 l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 234 LVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 3345687888887777777 6777788888887632 236678888777
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00052 Score=68.62 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCch
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~ 251 (614)
...+|+..+...++++.|..+|+++.+.+...+-.++..+...++..+|++++++.....+-|...+..-...+.+.++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34556666777788999999999998877777777888888888888898888887755333444444444455666666
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
+.|..+.+.+.+. .+.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666653 23334466666666666666666666666665
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.81 E-value=0.001 Score=72.02 Aligned_cols=159 Identities=9% Similarity=0.079 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
++..+-.|.....+.|..++|..+++.. .. ..||. .....+...+.+.+++++|....+.... .-+-+......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~-~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGI-HQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHH-Hh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 4667777778888889999999998876 33 67776 4455667778888899999888888864 33335677778
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNMP-MKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+..++.+.|++++|.++|++.- -.|+ ..+|.++-.++ ...|+.++|...|+++.+.... -...|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l-~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL-TRRGALWRARDVLQAGLDAIGD-GARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH------HH
Confidence 8888888999999999888872 2343 67788888888 8888999999999888877544 344444332 23
Q ss_pred hhhHHHHHHHHHhCC
Q 038206 460 WNDVGLVRKLMTDKG 474 (614)
Q Consensus 460 ~~~a~~~~~~m~~~g 474 (614)
...-...++++.-.+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 232 LNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHHcCccc
Confidence 333444555554333
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=0.0018 Score=70.89 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=143.9
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHH-HHHcCCCCchHHHHH-----
Q 038206 51 QIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIR-ACARSVDAKPQAIVL----- 121 (614)
Q Consensus 51 ~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~-~~~~~~~~~~~A~~~----- 121 (614)
+.+.+..-...+|.+ . ..+-.|+..|.. +++++|.++.+.-.. |+...+-.+.. .+.+. ++..++..+
T Consensus 16 e~~~r~~~~~~~p~n-~-~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv~~l~~ 92 (906)
T PRK14720 16 EKWTRADANNYSLSK-F-KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR-RPLNDSNLLNLIDS 92 (906)
T ss_pred hhhhhcccccCCcch-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-cchhhhhhhhhhhh
Confidence 344444444556455 6 788888888866 888888888875443 44433322222 33333 444444333
Q ss_pred -------------HHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 038206 122 -------------FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188 (614)
Q Consensus 122 -------------~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 188 (614)
...|...+ -+...+..+..+|-+.|+.+++.++++++++.. +-|+.+.|.+...|+.. ++++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 22222221 233566677777778888888888888888877 55777888888888888 8888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 189 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
|.+++.+.. .-|...+++.++.+++.++....+-|..-|..++ +.+.... |
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~----------------~ki~~~~--~ 218 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE----------------RKVLGHR--E 218 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH----------------HHHHhhh--c
Confidence 888876543 3377777888888888888765222222222222 2222221 2
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFA 315 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 315 (614)
..--+.++-.|-..|-+..+++++..+|+.+.+ .|.....-++.+|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223344566677888888999999999998763 46666777777775
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.0007 Score=67.71 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
...+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++. ... .+-|......-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~a-L~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEA-LKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHhcC
Confidence 34455666667788999999999998776666677888888888888999999887 322 2223344444455577889
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038206 355 MVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 406 (614)
+.+.|..+.+.+.+ ..| +..+|..|..+|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999988864 445 56689999999999999999999999887654
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.74 E-value=0.066 Score=54.14 Aligned_cols=394 Identities=14% Similarity=0.110 Sum_probs=214.7
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH
Q 038206 63 QQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139 (614)
Q Consensus 63 ~~~~~~~~~~~li~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~ 139 (614)
|.| . ..|+.||.-+....+++++..++++.. | ....|..-|..-... ++++....+|.+.+..- .+..-|.
T Consensus 17 P~d-i-~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s-kdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 17 PYD-I-DSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELAS-KDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred Ccc-H-HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 466 7 899999998887889999999999876 4 456788899998888 99999999999988764 5666666
Q ss_pred HHHHHHHc-cCCcHHH----HHHHHH-HHHhCCCCc-hhHHHHHHHH---------HHhcCCHHHHHHHHhhcCC-C---
Q 038206 140 FALKACAY-LFAFSQG----KQAHAH-IFKRGLVSD-VYINNSLIHF---------YASCGHLDLANKVFDNMLE-R--- 199 (614)
Q Consensus 140 ~ll~~~~~-~~~~~~a----~~~~~~-~~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~f~~m~~-~--- 199 (614)
.-|.-..+ .++.... .+.|+. +.+.|+++- -.+|+..+.. |....+++..++++.++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 66654432 2333332 233332 334565443 2346665553 3444567778888887733 2
Q ss_pred ------ChhHHHHHHHHHH-------hcCChhHHHHHHHHhhhc---------cCCChhhHH---------HHHHHHHhh
Q 038206 200 ------SLVSWNVMIDAFV-------QFGEFDSALKLFRRMQIL---------FEPDGYTFQ---------SITSACAGL 248 (614)
Q Consensus 200 ------~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~~---------~~pd~~t~~---------~ll~a~~~~ 248 (614)
|-..|..=|+... +...+..|.+++++...- ..|...|-. ..|.- -+.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Eks 249 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKS 249 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hhc
Confidence 1122221111110 112234444444444221 111111111 11110 000
Q ss_pred Cchh---------HHHHHHHHHHHhccCCCCcccc--------------------------------HHHHHHHHHHhc-
Q 038206 249 ATLS---------LGMWAHAYILRHCDHSLVTDVL--------------------------------VNNSLIDMYCKC- 286 (614)
Q Consensus 249 ~~~~---------~~~~~~~~~~~~~~~g~~~~~~--------------------------------~~~~li~~y~~~- 286 (614)
+-+. ...-++++..... +..|++. +|...|++..+.
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l--~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYL--GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000111111100 1112111 111111111110
Q ss_pred -------CC----------HHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHH
Q 038206 287 -------GS----------LDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFV 344 (614)
Q Consensus 287 -------g~----------~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~ 344 (614)
-+ .+.....+++.. ..-..+|-..|..-.+..-...|..+|.+. ++.+..+ +....+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHH
Confidence 00 111112222221 111235666666666777778888888888 7777777 455566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C--CCC--CHHHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P--MKP--DAVIWRSLLDACC 419 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--~~p--~~~~~~~ll~~~~ 419 (614)
+++.-+ ..++.+-|..+|+.=.+++|- ++.--...++.+...++-..|..+|++. + +.| ....|..+|.--
T Consensus 407 A~mEy~-cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE- 482 (656)
T KOG1914|consen 407 ALMEYY-CSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE- 482 (656)
T ss_pred HHHHHH-hcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-
Confidence 666544 457788888888876664443 3344457778888888888888888876 1 223 346888888766
Q ss_pred HhcCchHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGG---ICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
..-|++..+.++-++....-+. +....-..+++.|.-.+.+..-..-++.|
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 7888888888888877766551 22234456667776666665544444444
No 130
>PLN02789 farnesyltranstransferase
Probab=97.74 E-value=0.024 Score=55.70 Aligned_cols=176 Identities=9% Similarity=0.048 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLF-AFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
++.+-..+... ++.++|+.++.++++.. |+.. +|+.--..+...+ +++++...++.+.+.. +.+..+|+..-.
T Consensus 40 ~~~~ra~l~~~-e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 40 MDYFRAVYASD-ERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 33444445555 77788888888887766 4443 3444434444555 5677788877777765 334445665544
Q ss_pred HHHhcCCH--HHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh---Cc
Q 038206 179 FYASCGHL--DLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL---AT 250 (614)
Q Consensus 179 ~~~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~---~~ 250 (614)
++.+.|+. +++..+++.+.+ +|..+|+-....+.+.|+++++++.++++.+.-.-|...|+.....+.+. +.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 45555542 566777766633 46677887777777888888888888888765344444555444433333 11
Q ss_pred h----hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh
Q 038206 251 L----SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285 (614)
Q Consensus 251 ~----~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 285 (614)
. +........+++. .+-|...|+-+...+..
T Consensus 195 ~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhc
Confidence 1 2233333333332 23455666666666655
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0015 Score=65.92 Aligned_cols=245 Identities=13% Similarity=0.080 Sum_probs=168.1
Q ss_pred HHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCH
Q 038206 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 289 (614)
-+.++|+..+|.-.|+...+.-+-+...|.-+-..-+..++-..|...+....+. -+.+..+.-+|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhhhhH
Confidence 3567888888888888776654445667777777777777777788777777764 233466777778888888888
Q ss_pred HHHHHHHhcCC--CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 290 DIARQVFESMP--KR----------DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 290 ~~A~~~~~~m~--~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
..|.+.++.-. .| +...-+. ..+.......+..++|-++-...+..+|......|--.|.-.|.++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888887642 11 1000000 1122222344666777777456663344444445555578889999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-VIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
+|.+-|+..+. ++| |...||.|...++...+.++|+.-|.+. .++|+. .++..|--+| ...|.+++|.+.|-.
T Consensus 448 raiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~-mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC-MNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh-hhhhhHHHHHHHHHH
Confidence 99999999974 456 7889999999999999999999999887 778874 4566666677 999999999999988
Q ss_pred HHHhcCC---------CCchhHHHHHHHHhhcCChhhHH
Q 038206 435 VIESEGG---------ICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 435 ~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
++.+..+ ++...|..|=.++.-.++.|.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 8876433 12235555555555555555443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.70 E-value=0.025 Score=56.49 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSL 289 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 289 (614)
+...|++++|+..++.+....+-|..-.......+...++..+|.+.++.+... .|+ ....-.+.++|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhcCCh
Confidence 445666666666666655443333333334444445555555555555555442 222 34444455555555555
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 290 DIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 290 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
.+|.++++... ..|...|..|..+|...|+..++..-..+
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555443 12445555555555555555555444433
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.00075 Score=57.31 Aligned_cols=95 Identities=9% Similarity=-0.042 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
....-.+...+...|++++|.++|+-. .+.|. ..-|..|-..| ...|++++|+..|.++..++|+ |+.++-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 444456666778899999999999987 45564 45556665555 9999999999999999999999 99999999999
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 038206 454 YASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 454 ~~~~g~~~~a~~~~~~m~~ 472 (614)
|...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988665
No 134
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=4.7e-05 Score=45.72 Aligned_cols=29 Identities=38% Similarity=0.670 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
+||+||++|++.|++++|.++|++| .+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M-~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEM-RERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHH-hHCc
Confidence 6777777777777777777777777 6555
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.66 E-value=0.015 Score=64.07 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=88.8
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 213 (614)
+...+..|+..+...+++++|.++.+...+.. +.....|-.+...|...++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 44556667777767777777777777555432 11122222222255555554444433 22233333
Q ss_pred cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 293 (614)
..++.-+..+...|.. ..-+...+-.+..+|.+.|..+++..+++.+++. . +.|+.+.|.+...|+.. ++++|.
T Consensus 96 ~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 96 NLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---D-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 3333222222223322 2223335555566666667777777777777765 2 45566777777777777 777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 294 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.++.+. +.-|...+++.++.++|.++
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHH
Confidence 666543 22355555666666666665
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0023 Score=55.10 Aligned_cols=123 Identities=12% Similarity=0.156 Sum_probs=88.1
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc-c---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc--hhHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK-H---TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD--VYIN 173 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~ 173 (614)
.|..++..+. . ++...+...++.+.... |+. . ..-.+...+...|++++|...|+.+......++ ....
T Consensus 14 ~y~~~~~~~~-~-~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQALQ-A-GDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-C-CCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4555666664 5 78888888888888876 444 2 222334567788999999999999888763333 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 174 NSLIHFYASCGHLDLANKVFDNMLER--SLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
-.|...+...|++++|+..++....+ ....+......|.+.|++++|...|++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55777888899999999999876443 3345666778889999999999888753
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=6.7e-05 Score=45.02 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
++||++|++|++. |++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~-~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKM-GQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHcc-chHHHHHHHHHHHhHCc
Confidence 4788888888888 88888888888887766
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.60 E-value=0.0012 Score=56.21 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
......+...+...|++++|.+.|+.. ...| +...|..+...+ ...|+++.|...+++..+.+|. +...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACC-QMLKEYEEAIDAYALAAALDPD-DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 344556666677777777777777765 3334 445555555555 6777777777777777777776 67777777777
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 038206 454 YASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 454 ~~~~g~~~~a~~~~~~m~~ 472 (614)
|...|++++|...++...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777888888777776655
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.094 Score=53.03 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=67.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-VIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~ 424 (614)
-..+-+.|++..|...+.+++++ -+-|...|..-.-+|.+.|.+..|++=.+.. ...|+. ..|.-=..++ ....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al-~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL-RAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHH
Confidence 34456678888888888888763 2447788888888888888888887654443 334442 2333333333 44567
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
++.|.+.|.+.++.+|. +......+.+++.
T Consensus 442 ydkAleay~eale~dp~-~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPS-NAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Confidence 88888888888888776 4444444444333
No 140
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.55 E-value=0.028 Score=60.76 Aligned_cols=342 Identities=12% Similarity=0.035 Sum_probs=166.9
Q ss_pred CCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
.+...|+..|-+..+.. |+ ...|..+...|....|...|.+.|....+.+ ..|.....+..+.|++..+++.|..
T Consensus 472 K~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 34556666666555544 22 3467777777777777778888888776654 3456667788888888888888887
Q ss_pred HHhhcCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhcc
Q 038206 192 VFDNMLERSL-----VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266 (614)
Q Consensus 192 ~f~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 266 (614)
+.-...+.+. ..|--.--.|...++..+|+.-|+...+.-+-|...|..+..+|...|....+.++|..+...
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 7433322211 122222233444555555555555544433334445555555555555555555555444432
Q ss_pred CCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhcCCHH--------------
Q 038206 267 HSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMPKR----------DLTSWNSIILGFALHGRAE-------------- 321 (614)
Q Consensus 267 ~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~-------------- 321 (614)
.|+ ...---...+-+..|.+.+|...+..+... -..++-.+...+.-.|-..
T Consensus 626 ---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 ---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred ---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 221 111111222333445555554444433210 0111111111122222222
Q ss_pred ------------------HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH---H---HHHHHHHHHHHhcCCCCChh
Q 038206 322 ------------------AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV---S---EGRDYFDVMINEYNITPVLE 377 (614)
Q Consensus 322 ------------------~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~---~---~a~~~~~~~~~~~~~~p~~~ 377 (614)
.|..+|-.. + .. .|+......+..-.-..+.. + .|.+.+-.-. .+..+..
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~-e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~ 776 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQE-E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMY 776 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHh-c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccc
Confidence 222333322 1 00 22221111111111111111 1 1111111111 1111122
Q ss_pred HHHHHHHHHHH----cC----CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 378 HYGCLVDLLAR----AG----NIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 378 ~~~~li~~~~~----~g----~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
+|..|+.-|.+ +| +...|..-++.. ... -+..+|+.|-- . ...|++.-+...|-+....+|. +..+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV-l-sg~gnva~aQHCfIks~~sep~-~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV-L-SGIGNVACAQHCFIKSRFSEPT-CHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH-h-hccchhhhhhhhhhhhhhcccc-chhhe
Confidence 23333332222 11 223455555443 222 35666766543 3 5557888888888888888888 78888
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 448 VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+.-.|.+..+++.|...|.+.+.
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhh
Confidence 8888888888888888888877654
No 141
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.53 E-value=0.016 Score=63.00 Aligned_cols=127 Identities=10% Similarity=0.032 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
++..+-.|.....+.|.+++|..+++...+..+-+.........++.+.+.+++|....+..... -+.+....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG----GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----CCCCHHHHHHH
Confidence 46677778888888888888888888876543333445555666666666777766666666653 23334455555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
..++.+.|++++|..+|++...+ +..+|..+-..+-..|+.++|...|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666532 2455666666666666666666666655
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.46 E-value=0.24 Score=53.39 Aligned_cols=386 Identities=16% Similarity=0.139 Sum_probs=221.2
Q ss_pred HHHHHHHHHHhc---CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASF---ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~---g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
..|...+.++.. |+.++|..+++.... -|..|...+-..|... ++.++|..+|++..+.. |+..-...+.
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~~---P~eell~~lF 117 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQKY---PSEELLYHLF 117 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhC---CcHHHHHHHH
Confidence 457777777766 999999988887654 4778888888899999 99999999999998876 8877788888
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhhcCCCC-h-hH---HHHH
Q 038206 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH----------LDLANKVFDNMLERS-L-VS---WNVM 207 (614)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~~-~-~~---~~~l 207 (614)
.++.+.+++.+-.++--++-+ .++.+++.+=++++.+...-. +.-|.+.++.+.+.+ . .+ ...-
T Consensus 118 mayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 889888888776666555555 345566666667776655422 334666777765443 1 11 1112
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 285 (614)
...+-..|++++|++++..=... ..-+...-+--+.-....+.+.+..++-..+... |... |...++.+.+
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Dd----y~~~~~sv~k 269 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK---GNDD----YKIYTDSVFK 269 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCcc----hHHHHHHHHH
Confidence 23344578899999998544433 4445555556677777888888888888777775 4321 4444444333
Q ss_pred c----------------CCHHHHHHHHhcCC---CCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 286 C----------------GSLDIARQVFESMP---KRDLTSWNSIILGF---ALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 286 ~----------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
+ +.++...+..++.. .+++ |-+-+..+ -.-|+.++++-.|- +.-|-+|- |
T Consensus 270 lLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp--~LA~lel~kr~~~~gd~ee~~~~y~---~kfg~kpc---c 341 (932)
T KOG2053|consen 270 LLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGP--YLARLELDKRYKLIGDSEEMLSYYF---KKFGDKPC---C 341 (932)
T ss_pred HHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCc--HHHHHHHHHHhcccCChHHHHHHHH---HHhCCCcH---h
Confidence 2 22333222222221 1222 22223333 34477777655443 23333331 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHHHcCCH-----HHHHHHHHhC------C--
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE-------HYGCLVDLLARAGNI-----DEALHLVSNM------P-- 403 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m------~-- 403 (614)
..=+..|...=..++-..+..... +..++.. -+.+.+....-.|.+ +.-..++.+. +
T Consensus 342 ~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 342 AIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred HhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 111222222222233333333221 1111111 122222222223321 1112222111 1
Q ss_pred ----CCCC---------HHHHHHHHHHHHHhcCchH---HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 404 ----MKPD---------AVIWRSLLDACCKKHASVV---LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 404 ----~~p~---------~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
.-|. ..+-+.|+..| ++.++.. +|+-+++......+. |..+=..|+++|+-.|-+..|.+++
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~-rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLW-RKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHH
Confidence 1122 12456777888 8777654 455555555556666 6666678899999999999999999
Q ss_pred HHHHhCCCccCC
Q 038206 468 KLMTDKGVTKEP 479 (614)
Q Consensus 468 ~~m~~~g~~~~~ 479 (614)
+.+.-+++..+.
T Consensus 497 ~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 497 KTLDIKNIQTDT 508 (932)
T ss_pred HhcchHHhhhcc
Confidence 888777776554
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.088 Score=48.47 Aligned_cols=154 Identities=13% Similarity=0.062 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh----ccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN----HRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~----~~g~ 355 (614)
...|++.|++++|++..+....-..... =+..+.+..+.+-|.+.+++| +.- -+..|.+-|..++. ..+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~m-q~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKM-QQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHH-Hcc---chHHHHHHHHHHHHHHhccchh
Confidence 4456777777777777766332222222 233445566677777777777 331 23355554555443 2345
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+..|.-+|++|.+ ..+|+..+.+....+....|++++|..++++. ....+..+...++..-....++.+--.+...
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6666666666643 45666666666666666666666666666655 1112333333333332133334444445555
Q ss_pred HHHHhcCC
Q 038206 434 QVIESEGG 441 (614)
Q Consensus 434 ~~~~~~~~ 441 (614)
++....|.
T Consensus 267 QLk~~~p~ 274 (299)
T KOG3081|consen 267 QLKLSHPE 274 (299)
T ss_pred HHHhcCCc
Confidence 55554444
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.044 Score=50.39 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
+..+.|..+.+-|.+.++.|.+- +-.|.+.|..++.+ .+...+|.-+|++| .....|+..+.+....++...|
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~--s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL--SEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH--hcccCCChHHHccHHHHHHHhc
Confidence 44455667778888888888754 33455555555543 34678888888888 4447788888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (614)
++++|..+++....+ -..++.+...+|-.-...|...
T Consensus 222 ~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 222 RYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred CHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCCh
Confidence 888888888888763 3334555545554444455443
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.44 E-value=0.17 Score=51.31 Aligned_cols=128 Identities=11% Similarity=0.199 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
|+.+|+.||.-+-. ...+++.+.++++...- + -....|..-+..-...++++..+.+|.+.+..-+. ...|...
T Consensus 19 di~sw~~lire~qt--~~~~~~R~~YEq~~~~F-P-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lY 92 (656)
T KOG1914|consen 19 DIDSWSQLIREAQT--QPIDKVRETYEQLVNVF-P-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLY 92 (656)
T ss_pred cHHHHHHHHHHHcc--CCHHHHHHHHHHHhccC-C-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHH
Confidence 88999999987654 58899999999998754 1 34567888888888999999999999999876554 5556655
Q ss_pred HHHHHh-cCCHHHHH----HHHhh------cCCCChhHHHHHHH---------HHHhcCChhHHHHHHHHhhhc
Q 038206 177 IHFYAS-CGHLDLAN----KVFDN------MLERSLVSWNVMID---------AFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 177 i~~~~~-~g~~~~A~----~~f~~------m~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~~m~~~ 230 (614)
++.--+ .|+...+. +.|+- |.-..-..|+..|. -|..+.+.+...++|+++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 553322 23333322 12221 11123345666553 345555677777788887643
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0041 Score=60.11 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 383 (614)
.+|..++...-+.+..+.|..+|.+. ...+ ...+.....+++. +...++.+.|..+|+...+. +..+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 47888899999999999999999998 5332 3333333334443 34457788899999999874 556778889999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 384 DLLARAGNIDEALHLVSNM-PMKPDA----VIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.+.+.|+.+.|..+|++. ..-|.. ..|...+.-= .+.|+++...++.+++.+.-+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE-~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE-SKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999987 223333 5999999877 9999999999999999998766
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.41 E-value=0.0041 Score=52.79 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=64.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQ 213 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 213 (614)
....+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|++++|..+|+.... .+...|..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445555666777777777777776654 33566667777777777777777777776532 244566666777777
Q ss_pred cCChhHHHHHHHHhhhccCCChhh
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYT 237 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t 237 (614)
.|++++|+..|++..+. .|+...
T Consensus 98 ~g~~~~A~~~~~~al~~-~p~~~~ 120 (135)
T TIGR02552 98 LGEPESALKALDLAIEI-CGENPE 120 (135)
T ss_pred cCCHHHHHHHHHHHHHh-ccccch
Confidence 78888888777766543 344433
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.061 Score=49.11 Aligned_cols=165 Identities=11% Similarity=0.224 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK--R---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a 349 (614)
+|..++-+...+|+.+.|...++.+.. | -+.-..+| -+-..|++++|+++++.. .... +.|.+++.-=+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~l-L~dd-pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESL-LEDD-PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHH-hccC-cchhHHHHHHHHH
Confidence 344455556667888888888877652 2 12222222 134578999999999988 4443 5566777655555
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHh--cCch
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKK--HASV 425 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--~~~~ 425 (614)
.-..|+--+|++-+....+ .+..|...|.-|.+.|...|++++|.--++++ -+.|- ...+..+-..++.. ..+.
T Consensus 130 lka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 5556666677777777766 66778999999999999999999999999988 34453 33444444433222 2467
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 038206 426 VLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~ 446 (614)
+.+.+.|.+.++..+. +...
T Consensus 208 ~~arkyy~~alkl~~~-~~ra 227 (289)
T KOG3060|consen 208 ELARKYYERALKLNPK-NLRA 227 (289)
T ss_pred HHHHHHHHHHHHhChH-hHHH
Confidence 8899999999998875 4443
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.04 Score=56.62 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHH---------HHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH--HHHHHHHhCCC
Q 038206 99 FTWNTLIRACARSVDAKPQAIVL---------FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ--AHAHIFKRGLV 167 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~---------~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~ 167 (614)
+.+.+-+-.|... |.+++|..+ ++.+.... .+.-.++..=++|.+..+..--+- -++++.++|-.
T Consensus 557 vp~~~~m~q~Iea-g~f~ea~~iaclgVv~~DW~~LA~~A---LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 557 VPQSAPMYQYIER-GLFKEAYQIACLGVTDTDWRELAMEA---LEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccchhhhhc-cchhhhhcccccceecchHHHHHHHH---HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3344444555666 666666543 12221111 233345555566666555544332 34466777866
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~ 247 (614)
|+... +...++-.|++.+|-++|.+ +|....|+++|..|+-- -...-+..
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF---------D~aQE~~~ 682 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF---------DYAQEFLG 682 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH---------HHHHHHhh
Confidence 77643 34556668899999998854 56666777777766421 11112223
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (614)
.|..++-+.+...-... ..++.--.+-..++...|+.++|..+. ..+|-.+-++++-
T Consensus 683 ~g~~~eKKmL~RKRA~W-----Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADW-----ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIA 739 (1081)
T ss_pred cCChHHHHHHHHHHHHH-----hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHH
Confidence 33333333222211111 111111123445566677777775543 3455555566665
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Q 038206 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP-MKP 406 (614)
Q Consensus 328 ~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 406 (614)
+++ . ..+..+...+..-+.+...+..|-++|..|-. ...++++....+++.+|..+-++.| ..|
T Consensus 740 rkl-d----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~ 804 (1081)
T KOG1538|consen 740 RKL-D----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKD 804 (1081)
T ss_pred hhc-c----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccc
Confidence 554 2 22334455555555666777778888877721 2357788888888888888888875 345
Q ss_pred CH
Q 038206 407 DA 408 (614)
Q Consensus 407 ~~ 408 (614)
|+
T Consensus 805 dV 806 (1081)
T KOG1538|consen 805 DV 806 (1081)
T ss_pred cc
Confidence 54
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.31 E-value=0.0079 Score=51.78 Aligned_cols=47 Identities=9% Similarity=0.103 Sum_probs=22.2
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
...|+++.|+..++...... ..+..+..+.++|.+.|++++|...|+
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555554321111 123344455555555555555555554
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0029 Score=49.18 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
+..+...+...|++++|...+++. ...|+ ...+..+...+ ...++++.|.+.+++..+..+. +..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445666677778888888887765 33343 35555566666 7778888888888888887777 66677788888888
Q ss_pred cCChhhHHHHHHHHHh
Q 038206 457 ARRWNDVGLVRKLMTD 472 (614)
Q Consensus 457 ~g~~~~a~~~~~~m~~ 472 (614)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888876654
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.008 Score=49.50 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=46.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDAC 418 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 418 (614)
.+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|.+.|+.+ ...|+ ...+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444555555555555555543211111 1223444555555555555555555554 11222 23344444444
Q ss_pred HHhcCchHHHHHHHHHHHHhcCC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|+.+.|...++++.+..|+
T Consensus 87 -~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 87 -QELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred -HHhCChHHHHHHHHHHHHHCcC
Confidence 5556666666666666666555
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.17 E-value=0.0036 Score=49.34 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC--------CcHHHHHHHHHHHHhCCCCchhH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF--------AFSQGKQAHAHIFKRGLVSDVYI 172 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 172 (614)
-...|..+... +++.....+|+.+++.|+..|+..+|+.+|.+.++.. .+-..+.+++.|+..+++|+..+
T Consensus 28 ~i~~I~~~~~~-~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFEN-EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhh-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34566677777 9999999999999999993399999999999887653 24456788999999999999999
Q ss_pred HHHHHHHHHh
Q 038206 173 NNSLIHFYAS 182 (614)
Q Consensus 173 ~~~li~~~~~ 182 (614)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.15 E-value=0.00077 Score=51.81 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=24.1
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
+..++ .+.|++++|..++++ .+.++. +......+..+|.+.|++++|.++++
T Consensus 31 la~~~-~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCY-FQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHH-HHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 33333 555555555555555 333333 23333344555555555555555554
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0052 Score=54.83 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHhcC--CCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC----------
Q 038206 292 ARQVFESM--PKRDLTSWNSIILGFAL-----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG---------- 354 (614)
Q Consensus 292 A~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g---------- 354 (614)
-...|+.. ..+|-.+|..++..|.+ .|..+=....+..| .+-|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 34556655 46788888888888865 46777778888888 89999999999999998876532
Q ss_pred ------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 355 ------MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 355 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
+.+-|+++++.|. ++|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 2345666666663 35666666666666666665443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.09 E-value=0.0084 Score=49.37 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC--CchhHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI--CSGVYVL 449 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 449 (614)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+...+ ...|+++.|...++.+....|.. ....+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY-YAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35667788899999999999999887 22343 34566677777 89999999999999999987762 2456778
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 450 LSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 450 l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+..++.+.|++++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8899999999999999999988763
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.06 E-value=0.0093 Score=47.09 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHhcCCCCCh
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFVGVLSACNHRG--------MVSEGRDYFDVMINEYNITPVL 376 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~ 376 (614)
|-...|..+...+++.....+|+.+ ++.|+ .|+..+|+.++.+.++.. ++-+...+++.|.. .+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcH
Confidence 4445566666779999999999999 89999 899999999998876543 24456777888876 4888888
Q ss_pred hHHHHHHHHHHH
Q 038206 377 EHYGCLVDLLAR 388 (614)
Q Consensus 377 ~~~~~li~~~~~ 388 (614)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 888888877754
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.06 E-value=0.002 Score=49.46 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHH
Q 038206 317 HGRAEAALKYFDRLVVEESF-SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 394 (614)
.|+++.|+.+++++ ..... .|+...+..+..++.+.|++++|..+++.. + ..| +....-.+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~-~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKL-LELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHH-HHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 35555666666555 22211 122333333455555555555555555541 1 111 12222233555555555555
Q ss_pred HHHHHH
Q 038206 395 ALHLVS 400 (614)
Q Consensus 395 A~~~~~ 400 (614)
|++.++
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 159
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.037 Score=50.65 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=121.9
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC----------CChhhHHHHHHHHHcCCCCchHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN----------PNSFTWNTLIRACARSVDAKPQA 118 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~----------~~~~~~~~li~~~~~~~~~~~~A 118 (614)
+-+|+.+.+.- ++ + +++|+..|.- .-+++-...|+.-.. +-...-+.++..+.-. +.+.-.
T Consensus 125 R~lhAe~~~~l---gn-p---qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~-kEy~iS 196 (366)
T KOG2796|consen 125 RILHAELQQYL---GN-P---QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGM-KEYVLS 196 (366)
T ss_pred HHHHHHHHHhc---CC-c---HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcc-hhhhhh
Confidence 67777776542 33 3 6777777765 444444455543322 1223345566666667 888888
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHH
Q 038206 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI-----HFYASCGHLDLANKVF 193 (614)
Q Consensus 119 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~f 193 (614)
+..+++.++...+ .++.-...+.+...+.||.+.|...++...+..-..|....+.++ ..|.-..++..|...|
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8999999987755 677777888888889999999999999887754444444444443 4566677888999999
Q ss_pred hhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHH
Q 038206 194 DNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240 (614)
Q Consensus 194 ~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ 240 (614)
++++.. |.+.-|.-.-+..-.|+..+|++....|... .|...+-.+
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-~P~~~l~es 324 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-DPRHYLHES 324 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-CCccchhhh
Confidence 888664 4555555555555578999999999998765 444444443
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.97 E-value=0.016 Score=58.53 Aligned_cols=77 Identities=12% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 038206 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 102 ~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
.++|+.|... |..++++++++.=...|+. ||.+|++.||+.+.+.|++..|.++...|...+...+..++..-+..+
T Consensus 107 ha~vR~~l~~-~~~~~~l~~L~n~~~yGiF-~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 107 HALVRQCLEL-GAEDELLELLKNRLQYGIF-PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHhc-CCHHHHHHHHhChhhcccC-CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 3455555555 5555555555555555555 555555555555555555555555555554444444444443333333
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.098 Score=47.82 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=106.8
Q ss_pred CCHHHHHHHHhcCCC--------CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHH-HHhccCCH
Q 038206 287 GSLDIARQVFESMPK--------RDL-TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS-ACNHRGMV 356 (614)
Q Consensus 287 g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~-a~~~~g~~ 356 (614)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++ ... . |.+.-...+=. -+-..|+.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L-~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQL-RDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHh-C-CCChhHHHHHHHHHHHhhch
Confidence 456677777666541 222 23444455556677777777777776 332 2 44422221111 13345777
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
++|.++++.+.++ -+.|..++-.=+.+.-..|+--+|++-+.+. .+-.|...|.-+-.-| ..-|+++.|.-.+++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY-~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY-LSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhHhHHHHHHHHHHH
Confidence 7777777777653 2445566665555565666666666655544 3345777777777777 777777777777777
Q ss_pred HHHhcCCCCchhHHHHHHHHhhcC---ChhhHHHHHHHHHh
Q 038206 435 VIESEGGICSGVYVLLSRVYASAR---RWNDVGLVRKLMTD 472 (614)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 472 (614)
++=..|. ++..+..+...+.-.| +.+-+.+.+.+..+
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777777 6666666766665444 34455566655544
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.91 E-value=0.013 Score=45.31 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
|..+...+...|++++|...+++. ... .|+ ...+..+...+...+++++|.+.++...+ -.+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKA-LEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHH-Hhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHH
Confidence 334444555555555555555554 221 122 23333444444455555555555554433 112222344444444
Q ss_pred HHHcCCHHHHHHHHHh
Q 038206 386 LARAGNIDEALHLVSN 401 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~ 401 (614)
+...|+.++|...+..
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4445555555444443
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.88 E-value=0.0044 Score=45.37 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC-ChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR-RWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 472 (614)
+..+|..+-..+ ...|++++|+..|++.++.+|. ++..|..+..+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~-~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIY-FQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456777787787 8889999999999999999988 8889999999999999 79999998887654
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.85 E-value=0.017 Score=51.46 Aligned_cols=81 Identities=14% Similarity=0.006 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
..+..+...|...|++++|...|++. ...|+ ...|..+...+ ...|+++.|...++++++..|. +...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIY-ASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34555555666666666666666654 11221 24555555555 6677777777777777777766 566666666
Q ss_pred HHHhhcCC
Q 038206 452 RVYASARR 459 (614)
Q Consensus 452 ~~~~~~g~ 459 (614)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 66666555
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.80 E-value=0.052 Score=48.27 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
....+..+...+...|++++|...|++. ......++ ...+..+...+.+.|++++|...+....+. .+-+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEA-LKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 3445666666677777777777777766 43322222 245555666667777777777777766542 122344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
.+...|...|+...+..-++. + ...++.|.+++++..+.+|+ + |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~---------------A----~~~~~~A~~~~~~a~~~~p~-~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDE---------------A----EALFDKAAEYWKQAIRLAPN-N---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHH---------------H----HHHHHHHHHHHHHHHhhCch-h---HHHHHHHHHhcCc
Confidence 555666666655544432211 0 12356777888888777766 3 5455555554444
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.79 E-value=0.02 Score=55.31 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH-HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA-CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
.+|-.++...-+. +..+.|..+|.+.++.+. .+...|...... +...++.+.|..+|+..++. +..+...|...+
T Consensus 2 ~v~i~~m~~~~r~-~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRT-EGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHh-CChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 4577777777777 778888888888875431 233333333333 23346677788888888776 466777788888
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 178 HFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+.+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887543 2347888888888888888888888877654
No 167
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.78 E-value=0.02 Score=57.82 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKR--GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE----RSLVSWNVM 207 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~l 207 (614)
+......+++.+....+++.+..++-..... ....-..|..++|..|.+.|..+.++.+++.=.. ||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444444444444444332 1111223334555555555555555555443221 344555555
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~ 248 (614)
|..+.+.|++..|.++...|... ...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 55555555555555555444443 344444444444444443
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.62 Score=45.73 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
+.+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-.++.. . .- ..+.|-.++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s-kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S-KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C-CC--CCCChHHHHHHHHHCC
Confidence 444556667788999999999999999999999999999999999988776542 1 12 2378889999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 418 (614)
...+|..+...+ + +..-+.+|.++|++.+|.+.--+.+ |......+...|
T Consensus 252 ~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 252 NKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred CHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 999998887653 1 2457889999999999988765543 666666666555
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.68 E-value=0.012 Score=59.05 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=82.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
...+...|++++|.+.|..+++. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+| ...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~-~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC-MKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhCC
Confidence 34566789999999999999752 3336778888899999999999999999887 4556 566777777777 89999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
++.|+..|+++++.+|. +......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999998 76665554333
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.67 E-value=0.022 Score=50.51 Aligned_cols=94 Identities=11% Similarity=-0.111 Sum_probs=70.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (614)
....|..+...+...|++++|...|++. ...|+ ..+|..+-..+ ...|+.++|+..++++.+..|. ...++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~-~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH-TSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 3455667777778888999998888876 23332 34677777777 8889999999999999988877 6677777
Q ss_pred HHHHHh-------hcCChhhHHHHHHHH
Q 038206 450 LSRVYA-------SARRWNDVGLVRKLM 470 (614)
Q Consensus 450 l~~~~~-------~~g~~~~a~~~~~~m 470 (614)
+..+|. +.|++++|...+++-
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777777 778888776666543
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.66 E-value=0.41 Score=46.47 Aligned_cols=184 Identities=16% Similarity=0.205 Sum_probs=96.0
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
++++|..+|++ ....|-..|++++|.+.|.+.... +.+.++...+-.
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~--------------~~~~~~~~~Aa~-------- 76 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADC--------------YEKLGDKFEAAK-------- 76 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHH--------------HHHTT-HHHHHH--------
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHH--------------HHHcCCHHHHHH--------
Confidence 56666666543 456677778888888877776422 112222222211
Q ss_pred ccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 265 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
.|.....+|.+. ++++|...+++ -+..|...|++..|-+.+.++
T Consensus 77 ----------~~~~Aa~~~k~~-~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~l-------------- 120 (282)
T PF14938_consen 77 ----------AYEEAANCYKKG-DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKEL-------------- 120 (282)
T ss_dssp ----------HHHHHHHHHHHT-THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHH--------------
T ss_pred ----------HHHHHHHHHHhh-CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHH--------------
Confidence 222223333333 55555554433 345666666666666555544
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhCC---C-----CCCHHH-
Q 038206 345 GVLSACNHR-GMVSEGRDYFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNMP---M-----KPDAVI- 410 (614)
Q Consensus 345 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~~- 410 (614)
...|-.. |++++|.+.|+....-+.-... ..++..+...+.+.|++++|.++|++.. . +.++..
T Consensus 121 --A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 --AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp --HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred --HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 2334444 6666666666665432211111 3345567777888888888888887751 1 112221
Q ss_pred -HHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 411 -WRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 411 -~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.++| .+ ...||...|.+.+++..+..|.
T Consensus 199 ~l~a~l-~~-L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 199 FLKAIL-CH-LAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHH-HH-HHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHH-HH-HHcCCHHHHHHHHHHHHhhCCC
Confidence 22222 22 4567888888888888777654
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.64 E-value=0.0058 Score=44.11 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=37.4
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|+++.|...|+++++..|. +...+..+..++...|++++|...+++..+
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667777777777777777777 777777777777777777777777776654
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.62 E-value=0.004 Score=45.43 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=44.1
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
...|+++.|.+.++++.+..|. +...+..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4568889999999999999888 8888888999999999999999998876543
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.57 E-value=0.037 Score=55.57 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=80.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (614)
...+...|++++|+++|++. .. ..|+ ...|..+..++...|++++|...++.+++. -+.+...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~A-l~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQA-ID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 45567789999999999988 44 3444 466777778899999999999999999752 233677888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038206 390 GNIDEALHLVSNM-PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 390 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 418 (614)
|++++|...|++. .+.|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999887 5567666555555555
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.56 E-value=0.8 Score=44.42 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC-----CccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHh-cCCCCC--h
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESF-----SPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPV--L 376 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-----~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~ 376 (614)
++..+...+.+.|++++|.++|++. ..... +++.. .|...+-++...|++..|...++..... .++..+ .
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~-~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEV-AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 4455667788889999999999887 43322 22221 2223333556678888888888887432 122222 3
Q ss_pred hHHHHHHHHHHH--cCCHHHHHHHHHhCCCCCCHH
Q 038206 377 EHYGCLVDLLAR--AGNIDEALHLVSNMPMKPDAV 409 (614)
Q Consensus 377 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~ 409 (614)
.....|++++-. ...+++|..-|+.+. +.|..
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 345566666654 345777888887775 34443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.48 E-value=0.15 Score=53.76 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 408 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|.++--.. ...|++++|...+++++++++. ...|..+...|...|+.++|...+++...
T Consensus 420 ~~~~~ala~~~-~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQA-LVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455443333 4456677777777777666653 45666677777777777777766666544
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.44 E-value=0.019 Score=51.36 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=51.4
Q ss_pred CChhhHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHcc----------------CCcHHHH
Q 038206 96 PNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL----------------FAFSQGK 155 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~ 155 (614)
+|-.+|..+|..|.+. +|..+=....++.|.+-|+. -|..+|+.||+.+=+. .+-+-|.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444444444444322 13333333444445555544 4555555555443221 2345578
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 889999999999999999999988876654
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.9 Score=47.66 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAY 260 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~ 260 (614)
-|++++|.+++-++..+|. .|..+.+.|++-.+.++++.--.. -.--...|..+-..++....++.|.+.+.+
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777777777766653 344555566666555555432111 111123444444555555555555544433
Q ss_pred HHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
-.. ....+++|.+..++++-+.+-..+++ |....-.|...+.+.|..++|.+.|-+- + .|-
T Consensus 822 ~~~------------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~----s-~pk- 882 (1189)
T KOG2041|consen 822 CGD------------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR----S-LPK- 882 (1189)
T ss_pred ccc------------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc----c-CcH-
Confidence 211 11234444444444444444444432 2333444556666666666666666332 1 121
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH--------------HHHHHHHHHcCCHHHHHHHHHhC
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--------------GCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m 402 (614)
..+.+|.+..++.+|.++-+... -|.+.+. ---|..+.++|+.-+|-+++.+|
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 23455566666655555443221 1111111 11345566777766666666666
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.37 E-value=0.075 Score=47.03 Aligned_cols=80 Identities=8% Similarity=-0.104 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD--KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
..|..+...+... |++++|+..|++....... |. ..++..+...+...|+.++|.+.++...+.. +.....++.+
T Consensus 36 ~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSE-GEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3455555556666 7777777777777655311 11 2355556666666677777777666666542 2223334444
Q ss_pred HHHHH
Q 038206 177 IHFYA 181 (614)
Q Consensus 177 i~~~~ 181 (614)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.8 Score=45.99 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~ 352 (614)
-.+.+--+.-+..-|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+ + + ..-|..+..+|.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-k-----s-PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-K-----S-PIGYLPFVEACLK 756 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-C-----C-CCCchhHHHHHHh
Confidence 3344555566677899999999999999999999988899999999998887777655 2 1 3567778999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
.|+.++|..++.... |.. -.+.+|.++|++.+|.++--+
T Consensus 757 ~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 999999999886551 221 467889999999998876533
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.35 E-value=0.018 Score=41.91 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=40.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLL 415 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 415 (614)
..|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++++ ...|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 457777777777777653 2235666667777777888888888877777 3456655555544
No 182
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1.9 Score=45.94 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038206 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404 (614)
Q Consensus 325 ~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (614)
.+.+.+..+.|......|.+--+.-+...|+..+|.++-... . -||...|-.=+.+++..+++++-+++-+.+.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 334444223344455556666666777788888887766544 2 3677777777888888888888887777654
Q ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 405 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
.+.-|.-++.+| .+.|+.++|.+.+.+.-. +.-...+|.+.|++.+|.+.--
T Consensus 743 --sPIGy~PFVe~c-~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 --SPIGYLPFVEAC-LKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --CCCCchhHHHHH-HhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 245566777888 888888888877654311 1156778888888888877653
No 183
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.30 E-value=0.066 Score=44.38 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=33.3
Q ss_pred hcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 333 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
.....|+..+..+++.+|+..+++..|.++.+...+.++++-+...|..|+.-
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455666666666666666666666666666666666665556666555543
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.29 E-value=1.3 Score=43.56 Aligned_cols=108 Identities=11% Similarity=0.159 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 420 (614)
.+.+..+.-|...|....|.++-. ++++ |+...|-..+.+|+..+++++-.++... +..++-|..++.+| .
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~-~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC-L 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH-H
Confidence 344444555555666655555433 3343 5666666677777777777666665543 22345666666666 6
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
..|+..+|..+..+ .++..-+.+|.++|.|.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 66666666665554 11234456666777777666554
No 185
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.24 E-value=0.41 Score=47.45 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 278 SLIDMYCKCGSLDIARQVFESMPKR---D----LTSWNSIILGFAL---HGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.++-.|-...+++...++.+.+... + ...--...-++.+ .|+.++|++++..+ ......++..||..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV-LESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH-HhccCCCChHHHHHHH
Confidence 4445677777888888888777643 1 1122223345555 77888888888774 3444555666665555
Q ss_pred HHH
Q 038206 348 SAC 350 (614)
Q Consensus 348 ~a~ 350 (614)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 443
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.21 E-value=1.4 Score=43.18 Aligned_cols=303 Identities=16% Similarity=0.095 Sum_probs=169.2
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcC-CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHH--ccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA--YLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~ 157 (614)
..+..+.+.|..-.. -.-|.+|-.++... .|+-..|.+.-.+-.+. +. -|......+|.+-. -.|+.+.|++-
T Consensus 67 ~sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-ls-sDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 67 ESPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LS-SDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred hCcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hh-ccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 345556666654332 22455555555433 15666666555444322 12 56667777776653 46899999999
Q ss_pred HHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc--
Q 038206 158 HAHIFKRGLVSDVYI--NNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-- 230 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 230 (614)
|+.|.. .|.... ...|.----+.|+-+.|...-+.... | -.-.|.+.+...+..|+|+.|+++.+.-+..
T Consensus 143 feAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 143 FEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999865 222211 11122222356888888887776532 2 2347788899999999999999999887766
Q ss_pred cCCChhh--HHHHHHHHHh---hCchhHHHHHHHHHHHhccCCCCccccHH-HHHHHHHHhcCCHHHHHHHHhcCC--CC
Q 038206 231 FEPDGYT--FQSITSACAG---LATLSLGMWAHAYILRHCDHSLVTDVLVN-NSLIDMYCKCGSLDIARQVFESMP--KR 302 (614)
Q Consensus 231 ~~pd~~t--~~~ll~a~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~--~~ 302 (614)
+.+|..- -..++.+-.. ..+...++..-.+.. .+.||..-- -.-...+.+.|++.++-.+++.+- +|
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~-----KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN-----KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 6666542 2233333221 123333443333333 334443222 222456777888888877777765 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
....|. .|.+..-.+.++.-+++......++||. .+...+..+-...|++..|..--+... ...|....|..
T Consensus 295 HP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lL 367 (531)
T COG3898 295 HPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLL 367 (531)
T ss_pred ChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHH
Confidence 443332 2333333334444444442334456654 445556666666777776666555442 44566666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHhC
Q 038206 382 LVDLLARA-GNIDEALHLVSNM 402 (614)
Q Consensus 382 li~~~~~~-g~~~~A~~~~~~m 402 (614)
|.+.-... |+-.++...+-+.
T Consensus 368 lAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHH
Confidence 66655433 6666666665544
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.20 E-value=0.17 Score=43.25 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=17.6
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhc
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFES 298 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (614)
.|+..+-.+..+|.+.|+.+.|.+.|+.
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566666666666776666666654
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.19 E-value=0.029 Score=40.34 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+...+.+.|++++|.+.|++. ...| +...|..+-..+ ...|++++|...|+++++..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRIL-YQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcC
Confidence 345667777788888777776 4445 344555555555 7778888888888888777766
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.02 Score=53.54 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=81.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCch
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASV 425 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~ 425 (614)
-..+.+++++|.+.|...++ +.| |.+.|..=..+|.+.|.++.|.+=.+.. .+.|. ..+|..|-.+| ...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~-~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY-LALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCcH
Confidence 35678999999999999874 455 6777777888999999999998876655 66665 56899999999 888999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
++|.+.|++.++++|. +......|-.+--+.+
T Consensus 166 ~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD-NESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhc
Confidence 9999999999999988 6644444443333333
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.04 E-value=0.022 Score=42.18 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=43.0
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+ ...++++.|.++++++++.+|. ++..+.....+|.+.|++++|.+.++...+.
T Consensus 4 ~~-~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IY-LQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HH-HhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44 6677888888888888888888 7777888888888888888888888776643
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.01 E-value=0.54 Score=44.31 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChh-hH---HHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSF-TW---NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~-~~---~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
..|..-...+.+|++++|.+.|+.+.. |+.. .- -.+..++.+. +++++|...|++..+.....|+ ..+...+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~ 111 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPN-IDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCc-hHHHHHH
Confidence 556666666666999999999988865 4332 11 2244677788 9999999999999887733222 2344444
Q ss_pred HHHHc--c---------------CCcH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 038206 143 KACAY--L---------------FAFS---QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202 (614)
Q Consensus 143 ~~~~~--~---------------~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 202 (614)
.+.+. . .|.. .|.+.++.+++ -|=...-..+|..-+..+...=..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHHHH
Confidence 44331 0 1111 22233333333 232223334444333333211111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAY 260 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~ 260 (614)
.--.+..-|.+.|.+..|+.-|+.+.+. .+........+..++...|..+++......
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1113445578888888888888888766 233333444555555555555555544433
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.98 E-value=0.086 Score=43.67 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHH--------------HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVM--------------INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--- 402 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 402 (614)
..++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++.+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555554432 111233444555555555555555555555444433
Q ss_pred -CCCCCHHHHHHHHHHH
Q 038206 403 -PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 403 -~~~p~~~~~~~ll~~~ 418 (614)
++.-+..+|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 3333344454444433
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.87 E-value=0.15 Score=41.82 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHh
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPD--KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYAS 182 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~ 182 (614)
++-.. |+.++|+.+|++....|.. .. ...+..+-..+...|++++|..+++........+ +..+...+.-++..
T Consensus 10 a~d~~-G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSL-GREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhc-CCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44455 8888888888888887744 22 2345556667777888888888888777653221 11222223335566
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFV 212 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 212 (614)
.|+.++|.+.+-....++...|.--|..|+
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877777776554444445555555544
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.12 Score=48.50 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=78.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcC
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAG 390 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 390 (614)
-+.+.+++.+|+..|.+. .. +.|+. +-|..=..+|++.|.++.|++--+..+ .+.| ....|..|-.+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~A-I~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEA-IE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHH-Hh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 456789999999999987 44 55544 666677788999999999988777665 4555 3678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038206 391 NIDEALHLVSNM-PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 418 (614)
++++|.+.|++. .+.|+-.+|..=|...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999998886 7888877776655554
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.67 E-value=0.28 Score=40.24 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLA 387 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 387 (614)
-.++-..|+.++|+.+|++. ...|..... ..+..+-+++...|++++|..+++....++.-.+ +......+...+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~A-l~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRA-LAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888887 666665542 4555666777788888888888887765422111 2222223444666
Q ss_pred HcCCHHHHHHHHHh
Q 038206 388 RAGNIDEALHLVSN 401 (614)
Q Consensus 388 ~~g~~~~A~~~~~~ 401 (614)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776643
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.67 E-value=0.67 Score=48.92 Aligned_cols=142 Identities=15% Similarity=0.040 Sum_probs=93.1
Q ss_pred CCCCChhhHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHcc---C-----CcHHHHHHHH
Q 038206 93 IENPNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACAYL---F-----AFSQGKQAHA 159 (614)
Q Consensus 93 m~~~~~~~~~~li~~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~---~-----~~~~a~~~~~ 159 (614)
.+..|...|...+.+.... .+....|.++|++..+.. |+- ..|..+.-++... . ++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3346788899998875442 123678999999999987 664 3444333322211 1 1222333333
Q ss_pred HHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 160 HIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 160 ~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
..... ....+..+|.++.-.+...|++++|...|++. .+++..+|..+...+...|+.++|.+.|++.... .|...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL-RPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCc
Confidence 33222 13345567777777777789999999999987 3467778888999999999999999999887654 44444
Q ss_pred hH
Q 038206 237 TF 238 (614)
Q Consensus 237 t~ 238 (614)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.61 E-value=0.052 Score=39.58 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhcC
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHA-SVVLSEEVAKQVIESEG 440 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~ 440 (614)
...|..+...+.+.|++++|+..|++. ...| +...|..+-.++ ...| ++++|++.+++.++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAY-MKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHcCc
Confidence 456677777778888888888877765 3345 445666666666 7777 68888888888887765
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.60 E-value=2.8 Score=41.90 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCCh---hhHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNS---FTWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
.++.+.+... |.| + ..|=.||..|.. |..++-++++++|..|-+ .+|..-|++=... .++.....+|.+.
T Consensus 29 lrLRerIkdN---Ptn-I-~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~-~df~svE~lf~rC 102 (660)
T COG5107 29 LRLRERIKDN---PTN-I-LSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR-KDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHhhcC---chh-H-HHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh-hhHHHHHHHHHHH
Confidence 4555555443 366 8 999999999999 999999999999998654 4688888876666 8999999999999
Q ss_pred HHcCCCCCCcchHHHHHHHHHccC
Q 038206 126 IEQGNVLPDKHTFPFALKACAYLF 149 (614)
Q Consensus 126 ~~~~~~~p~~~t~~~ll~~~~~~~ 149 (614)
.... .+...|..-|.-..+.+
T Consensus 103 L~k~---l~ldLW~lYl~YIRr~n 123 (660)
T COG5107 103 LKKS---LNLDLWMLYLEYIRRVN 123 (660)
T ss_pred Hhhh---ccHhHHHHHHHHHHhhC
Confidence 8865 55566666665554443
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=95.54 E-value=0.087 Score=45.22 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=72.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNMP-MKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
..--+-..|++++|..+|.-+- ..| |..-|..|-..+ ...++++.|...|......+++ |+.++......|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~-Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC-QLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 3334457899999999998872 233 444566665555 8899999999999999999988 89999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 038206 460 WNDVGLVRKLMTD 472 (614)
Q Consensus 460 ~~~a~~~~~~m~~ 472 (614)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.37 Score=45.60 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=84.0
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKH--ASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+-|...|-.|...|.+.|+.+.|..-|.+. .+. +|...+..+-.++.... ....++..++++++..+|. |..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 347889999999999999999999999876 333 35556666666653333 3457899999999999999 999999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
.|...+...|++.+|...|+.|.+..-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987544
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.45 E-value=0.38 Score=41.28 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
...++..+...|+++.|..+.+.+. .| |...|..+|.+|...|+..+|++.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344555555566666655555544 22 4455555556666666655555555544
No 202
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.44 E-value=0.67 Score=37.94 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.-.|..++..++..+. .. ..+..-++.++--....-+-+-..++++.+-+-+.+. .||++..
T Consensus 13 ildG~V~qGveii~k~-v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKT-VN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHTT-HHHHHHHHHHH-HH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHhchHHHHHHHHHHH-cC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 3457777777777665 22 1233445555544444444455555555543222221 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...-+-.++ .+..-...-+... ...|.-+.-.+++..+.+. -++++....-+..+|.+.|...++.+++++.=++|
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~l-v~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDIL-VKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHH-HHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHH-HHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333333332 2333445556677 8888889999999988763 34478889999999999999999999999999988
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.39 E-value=0.75 Score=47.79 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=96.8
Q ss_pred hHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 100 TWNTLIRACARSVDAK--PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~--~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
.++..-.+|.+- ++. -+.+.-+++|.++|.. |+... +...|+-.|.+.+|-++|.+ .|.+ |..+
T Consensus 600 ~f~~ARkAY~rV-Rdl~~L~li~EL~~~k~rge~-P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAl 665 (1081)
T KOG1538|consen 600 DFETARKAYIRV-RDLRYLELISELEERKKRGET-PNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRAL 665 (1081)
T ss_pred hhHHHHHHHHHH-hccHHHHHHHHHHHHHhcCCC-chHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHH
Confidence 344455566554 333 2344456777788876 77643 33456777888888888753 4544 4566
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC-------ChhHH-------HHHHHHHHhcCChhHHHHHHHH-----hhh----c-cCC
Q 038206 178 HFYASCGHLDLANKVFDNMLER-------SLVSW-------NVMIDAFVQFGEFDSALKLFRR-----MQI----L-FEP 233 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~~-------~~~~~-------~~li~~~~~~g~~~~A~~~~~~-----m~~----~-~~p 233 (614)
.+|.....++.|.++...-... ....| .+....+..+|+.++|..+.-+ |.- . -..
T Consensus 666 EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ 745 (1081)
T KOG1538|consen 666 EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA 745 (1081)
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh
Confidence 7777777777777776433110 11111 1233344556666666654322 111 1 223
Q ss_pred ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 234 d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
+..+...+..-+.+...+..|-++|..+-.. .+++++....+++++|..+-++.++
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------------HHHhhheeecccchHhHhhhhhCcc
Confidence 3334444444444555566666666554332 3566667777777777777776664
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.36 E-value=0.14 Score=48.72 Aligned_cols=56 Identities=5% Similarity=-0.092 Sum_probs=25.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICS---GVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+...+ ...|+++.|...|+.+.+..|+ ++ ..+..++.+|...|++++|.++++...
T Consensus 186 LG~~y-~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 186 LGQLN-YNKGKKDDAAYYFASVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344 4445555555555555544443 21 222223444445555555555554443
No 205
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.33 E-value=5.9 Score=44.73 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH--HHHHHHHHHhcc
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI--TFVGVLSACNHR 353 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~--t~~~ll~a~~~~ 353 (614)
|+--.-+|.++|+.++|.+ +|...|+|++|+.+-.+| .. .-|.. +--.|..-+...
T Consensus 955 ~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql-~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQL-SE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred ccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhh-cC---CHHHHHHHHHHHHHHHHHc
Confidence 3344556778888888855 455689999999999877 21 11222 224567777888
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038206 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403 (614)
Q Consensus 354 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (614)
++.-+|-++..+... .| .--+..|++...+++|.++.....
T Consensus 1013 ~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888888877766543 22 235567788888899988776553
No 206
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.29 E-value=1.6 Score=37.10 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=53.3
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 216 (614)
....++..+...+.......+++.+.+.+ ..+...+|.++..|++.+ .+...+.++. ..+.......+..|-+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34556666666667777777777777766 356667788888887653 3344444442 2233444456666666666
Q ss_pred hhHHHHHHHHh
Q 038206 217 FDSALKLFRRM 227 (614)
Q Consensus 217 ~~~A~~~~~~m 227 (614)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666655
No 207
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.17 E-value=0.019 Score=35.01 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
|++.++.+|+ ++.+|..|..+|...|++++|.
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788999999 9999999999999999999986
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.34 Score=45.86 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
|...|-.|-..|.+.|+.+.|..-|.+..+..|-.|+.. .|...+..-+....-.++.++|+++.+ .-+-++.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHH
Confidence 445555555555555555555555555423333333331 122222222222334455555555543 22224444445
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLD 416 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 416 (614)
|...+...|++.+|...|+.| ..-|....|..+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 555555556666666555555 22333334444443
No 209
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.21 Score=46.42 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=84.9
Q ss_pred HHHHHHhcCC--CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC---------
Q 038206 291 IARQVFESMP--KRDLTSWNSIILGFALH-----GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG--------- 354 (614)
Q Consensus 291 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g--------- 354 (614)
..++.|.... ++|-.+|-+++..|... +..+-....++.| ++.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456777776 77888999998888654 5677777888899 99999999999999999886643
Q ss_pred -------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH-HHHHHHHhC
Q 038206 355 -------MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID-EALHLVSNM 402 (614)
Q Consensus 355 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 402 (614)
+-+-+..+++.|. .+|+.||..+-..|++++++.|..- +..++.--|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345788999994 5899999999999999999988643 333443334
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.05 E-value=1 Score=44.30 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH---HHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVM---INEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-------PM-KPDA 408 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~ 408 (614)
..|..|-..|.-.|+++.|+..++.- .+++|-.. ....++.|..++.-.|+++.|.+.++.. +- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555555566667777777766532 23344332 2345666777777778888777777653 21 1244
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHh----cCC-CCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIES----EGG-ICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
.+..+|-+.| ....+++.|+..+.+-+.. +-. -....+.+|.++|...|..++|+.+.+.-
T Consensus 276 QscYSLgNty-tll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTY-TLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5566677777 6667777777776654322 111 02466778888888888888887766544
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.91 E-value=2.4 Score=37.14 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhCC------CCCCH
Q 038206 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI-TPVLEHYGCLVDLLARAGNIDEALHLVSNMP------MKPDA 408 (614)
Q Consensus 336 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~ 408 (614)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....++..+|...++.+. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666788888899999999999988865 54 4467777778888888899999988888761 22443
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
--.+-..+ ...|....|+..|+.....-|.|.... ....++.+.|+.+++..-+..+.+
T Consensus 163 --~Ll~aR~l-aa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 --HLLFARTL-AAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --hHHHHHHH-HhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHHHHHHHHHH
Confidence 33345566 777899999999999998877754444 445667888888877765555443
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.88 E-value=0.49 Score=45.03 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKP-DAVIWRSLLD 416 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~ 416 (614)
|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333445667777777766665432111 1234556667777777777777777665 2111 1233433444
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+ ...|+.+.|..+++++++..|+
T Consensus 226 ~~-~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IM-QDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HH-HHcCCHHHHHHHHHHHHHHCcC
Confidence 45 6677888888888888887777
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=1.1 Score=44.23 Aligned_cols=152 Identities=7% Similarity=0.018 Sum_probs=91.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHH--HHhccCCHHHHHHHHHHHHHhcCCCCChhHH-----------
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS--ACNHRGMVSEGRDYFDVMINEYNITPVLEHY----------- 379 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----------- 379 (614)
++...|+.++|.+.-...++..... .+..+++ ++...++.+.+...|+..+ ...|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4556677777776665551221111 1222222 2334566777777776653 334432211
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 380 --GCLVDLLARAGNIDEALHLVSNM-PMK-----PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 380 --~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.-=.+...+.|++.+|.+.+.+. .+. |+...|...-... .+.|+..+|+.-.++..++++. -...|..-.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~-~rLgrl~eaisdc~~Al~iD~s-yikall~ra 328 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN-IRLGRLREAISDCNEALKIDSS-YIKALLRRA 328 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh-cccCCchhhhhhhhhhhhcCHH-HHHHHHHHH
Confidence 11123345678888888888776 333 4555666666666 7778888888888888887766 445555566
Q ss_pred HHHhhcCChhhHHHHHHHHHhC
Q 038206 452 RVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+++...++|++|.+-+++..+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6777788888888888776543
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.79 E-value=0.12 Score=38.00 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 384 DLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..|.+.+++++|.++++.+ ...|+ ...|...-..+ ...|+++.|.+.+++..+..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCL-FQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHH-HHhccHHHHHHHHHHHHHHCCC
Confidence 4567777888888777776 44454 33444444444 7778888888888888877776
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.75 E-value=2.7 Score=36.87 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHH
Q 038206 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-----SLVSWNVM 207 (614)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~l 207 (614)
|+...-..+..+....|+..+|...|++...--+..|..+.-.+.++....++...|...++.+.+- +..+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555555566666666666666666666655444555555555555555566666666666554221 22233344
Q ss_pred HHHHHhcCChhHHHHHHHHhh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~ 228 (614)
...|...|.+.+|..-|+...
T Consensus 167 aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHH
Confidence 455555555555555555544
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=3.6 Score=38.20 Aligned_cols=227 Identities=12% Similarity=0.029 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH-HhhCc--hhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC-AGLAT--LSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~-~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
.|+.=+.++++....++|..-++....--.||-+ |...=..+ .+.|. .-..+.+|..+.+. .| .-+++|
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~-----lg--npqesL 142 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY-----LG--NPQESL 142 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHh-----cC--CcHHHH
Confidence 4666666777777777776655544332122210 00000000 01111 12234455555543 11 236777
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPK--RDL--------TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a 349 (614)
...|.-...+++-...|+.=.. ..+ ..-+.++..+.-.|.+.-.+.++++. .+...+-+......|.+.
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~v-i~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSV-IKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHH-HHhCCcccHHHHHHHHHH
Confidence 7777666556665555554332 222 23455666666677777888888887 665445566667777777
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhCCCC-C-CHHHHH--HHHHHHHH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYG-----CLVDLLARAGNIDEALHLVSNMPMK-P-DAVIWR--SLLDACCK 420 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~--~ll~~~~~ 420 (614)
-.+.|+.+.|..+|+...+..+ ..+....+ .....|.-++++.+|...+.+++.. | |....| +|+. .
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl---l 297 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL---L 297 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH---H
Confidence 7888888888888887755322 22222222 2333444566777888888777432 2 222222 2322 3
Q ss_pred hcCchHHHHHHHHHHHHhcCCC
Q 038206 421 KHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
..|+...|.+..+.+++..|.|
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 4577778888888888877763
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.70 E-value=3.9 Score=38.55 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLV 399 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 399 (614)
-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.++.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34555555555555555555433222 2333444555555555555555444
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.65 E-value=0.18 Score=43.32 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH-----hCCCccCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT-----DKGVTKEP 479 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 479 (614)
....++..+ ...|+++.|...+++++...|- +...|..++.+|...|+..+|.++++++. +.|+.|++
T Consensus 64 ~~~~l~~~~-~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEAL-LEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHH-HhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 444556666 7788889999999999998888 88888899999999999999988887763 34666643
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.42 E-value=3.9 Score=37.35 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDL 385 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 385 (614)
+..++.-|-......+|...+..+ ... .-..- ..+..-|.+.|.+..|..-++.+++++.-.+. ......++..
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l-~~~---la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAEL-RNR---LAEHE-LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHH-HHH---HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHH-HHH---HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 344555555555555555544444 210 00011 12344566677777777777777665332221 2334556666
Q ss_pred HHHcCCHHHH
Q 038206 386 LARAGNIDEA 395 (614)
Q Consensus 386 ~~~~g~~~~A 395 (614)
|.+.|..+.|
T Consensus 188 y~~l~~~~~a 197 (203)
T PF13525_consen 188 YYKLGLKQAA 197 (203)
T ss_dssp HHHTT-HHHH
T ss_pred HHHhCChHHH
Confidence 6666666543
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.19 E-value=0.12 Score=38.81 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=6.9
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 038206 381 CLVDLLARAGNIDEALHLV 399 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~ 399 (614)
.+...|...|++++|++.|
T Consensus 10 ~la~~~~~~~~~~~A~~~~ 28 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYY 28 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3333333334333333333
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.02 E-value=0.27 Score=49.47 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA----VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (614)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+-.+| ...|++++|+..++++++.... .|..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcay-a~LGr~dEAla~LrrALelsn~----~f~~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCH-AYREEGKKAADCLRTALRDYNL----KFST 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcch----hHHH
Confidence 5677888899999999999999999884 667764 3588888888 8889999999999999887311 2221
Q ss_pred HHH--HHhhcCChhhHHHHHHHHHhCCCc
Q 038206 450 LSR--VYASARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 450 l~~--~~~~~g~~~~a~~~~~~m~~~g~~ 476 (614)
+.. .+.......+..++++....-|..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111 112233445777778777777764
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.92 E-value=7.1 Score=38.50 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=132.0
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHH--HHHHHHHHHHh--
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMP-----KRDLT--SWNSIILGFAL-- 316 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~--~~~~li~~~~~-- 316 (614)
+.|+.+.+.+.-+.... .-|. ...+.+++...+..|+++.|+++.+.-. ++|+. .--.|+.+-+.
T Consensus 166 r~GareaAr~yAe~Aa~-----~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 166 RLGAREAARHYAERAAE-----KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred hcccHHHHHHHHHHHHh-----hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 45555555555544443 2333 5577888889999999999999988544 44442 22333333221
Q ss_pred -cCCHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 317 -HGRAEAALKYFDRLVVEESFSPNSITFV-GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 317 -~g~~~~A~~l~~~m~~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.-+...|...-. +...+.||.+.-. ....++.+.|++.++-.+++.+= .-.|.+..+. .-.+.+.|+...
T Consensus 241 ldadp~~Ar~~A~---~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~--lY~~ar~gdta~ 312 (531)
T COG3898 241 LDADPASARDDAL---EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIAL--LYVRARSGDTAL 312 (531)
T ss_pred hcCChHHHHHHHH---HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHH--HHHHhcCCCcHH
Confidence 234555555544 3345677764432 34457889999999999999984 4456665543 333456665322
Q ss_pred H--HH--HHHhCCCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh-cCChhhHHHHHH
Q 038206 395 A--LH--LVSNMPMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS-ARRWNDVGLVRK 468 (614)
Q Consensus 395 A--~~--~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~ 468 (614)
. .+ -+. .++| +..+--.+..+. ...|++..|..-.+......|. ...|..|.++-.. .|+-.++...+-
T Consensus 313 dRlkRa~~L~--slk~nnaes~~~va~aA-lda~e~~~ARa~Aeaa~r~~pr--es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 313 DRLKRAKKLE--SLKPNNAESSLAVAEAA-LDAGEFSAARAKAEAAAREAPR--ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHH--hcCccchHHHHHHHHHH-HhccchHHHHHHHHHHhhhCch--hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 1 11 122 3445 455566666666 7889999999888888887776 7788888887654 599999888886
Q ss_pred HHHh
Q 038206 469 LMTD 472 (614)
Q Consensus 469 ~m~~ 472 (614)
+-.+
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 6544
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.88 E-value=0.16 Score=33.07 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
+|..+-.++ ...|++++|+++++++++..|+ |+..+..|.
T Consensus 3 ~~~~la~~~-~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAY-RRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 566677777 8888888888888888888888 777666554
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.77 E-value=5.3 Score=36.49 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 359 (614)
+..-|.+.|.+..|..-++.+...-.-.| .......++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34557777777777777777733211111 124445666677777766643
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.68 E-value=2.4 Score=43.70 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a 359 (614)
.+...++|+++.|.++-++.. +...|..|-....+.|+.+-|.+.|.+. .. |..|+-.|.-.|+.+.-
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHH
Confidence 456677899999988877665 6668999999889999999999888766 22 45555566777887777
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038206 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403 (614)
Q Consensus 360 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (614)
.++.+....+ | -++.-..++.-.|+.++..+++.+.+
T Consensus 393 ~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 393 SKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 6666655432 2 13444555556677777777776654
No 226
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.50 E-value=2.3 Score=36.98 Aligned_cols=135 Identities=9% Similarity=0.037 Sum_probs=91.2
Q ss_pred HHHHHHhhhcCCCCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc--CChhHHHHHHhcCCC
Q 038206 18 HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF--ADLDYAFRVFYQIEN 95 (614)
Q Consensus 18 l~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~--g~~~~A~~~f~~m~~ 95 (614)
++.++.+.+.|+.|+...+..++..+...+..-+++..+.-.-++ ++ . .+...|++.-.. .-..-|.+.+.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~-DS-k-~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIP-DS-K-PLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC-Cc-H-HHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 566777778899999999999999998888877777654444344 55 4 566666554433 234455566655542
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (614)
.+..++..+... |++-+|+++.+.... .+......++.+..+.+|...--.++....+.+
T Consensus 91 ----~~~~iievLL~~-g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 ----AYEEIIEVLLSK-GQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hHHHHHHHHHhC-CCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 466778888888 999999988876533 233345667777777777666666666555543
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.35 E-value=0.21 Score=37.39 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHh----cCC-CC-chhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIES----EGG-IC-SGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.+++.+-..+ ...|++++|+..+++.++. ++. |+ ..++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVY-RELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHH-HHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777 9999999999999999865 222 11 4567789999999999999999998754
No 228
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=16 Score=39.52 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
.++-..|..+.- |++++|-...-.|...+..-|...+..++.. ++......+ +.... ++.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~-~~l~~Ia~~---lPt~~-~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAEL-DQLTDIAPY---LPTGP-PRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccc-cccchhhcc---CCCCC-cccCchHHHHHHHHHHH
Confidence 456666666655 7788887777777777777777777777776 555433322 22221 11345567777776655
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
......++...+ .+++.+.-...+++- ..=+++-.+ +...-..|+..|...+++..|+.++-..
T Consensus 468 ----~~~~~F~e~i~~--Wp~~Lys~l~iisa~---------~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 468 ----SDVKGFLELIKE--WPGHLYSVLTIISAT---------EPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----HHHHHHHHHHHh--CChhhhhhhHHHhhc---------chHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 222223333222 122222222222111 111111111 1122233778888888888888888777
Q ss_pred hh
Q 038206 228 QI 229 (614)
Q Consensus 228 ~~ 229 (614)
+.
T Consensus 532 k~ 533 (846)
T KOG2066|consen 532 QD 533 (846)
T ss_pred cC
Confidence 53
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=15 Score=39.08 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=91.0
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD----KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|.+++|.+++-.|.++|.. |..+.+- |++-...++++. |....| ...|..+..-++....+++|.+
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~kl-gDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKL-GDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhh-hhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887763 4555555 777666665532 211011 2356666677777777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
++..--. ...++.+|.+..++++-..+-..+++ |....-.|...+...|.-++|.+.|-+-- .|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p--- 881 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS---LP--- 881 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc---
Confidence 7654321 12355666666666666665555554 34455566677777777777777665432 11
Q ss_pred hHHHHHHHHHhhCchhHHHHHH
Q 038206 237 TFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
...+.+|..++++.+|.++-
T Consensus 882 --kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 23456666666666665543
No 230
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.82 E-value=0.95 Score=44.51 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=151.0
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHH--H--hCCC-CchhHHHHHH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKH----TFPFALKACAYLFAFSQGKQAHAHIF--K--RGLV-SDVYINNSLI 177 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li 177 (614)
-+++. |+.+..+.+|+..++.|-. |.. .|..|-++|.-.+++++|.++|..=+ . .|-+ -.......|-
T Consensus 26 RLck~-gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 26 RLCKM-GDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHhc-cchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 47888 9999999999999998833 433 46666778888899999998876422 1 1100 0111222233
Q ss_pred HHHHhcCCHHHHHHHHhh-c------CCC--ChhHHHHHHHHHHhcCC--------------------hhHHHHHHHHhh
Q 038206 178 HFYASCGHLDLANKVFDN-M------LER--SLVSWNVMIDAFVQFGE--------------------FDSALKLFRRMQ 228 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~-m------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 228 (614)
+.+--.|.+++|.-.-.+ + -.+ ....+-.+...|...|+ ++.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333444556655433211 1 111 12234445555555443 234445554332
Q ss_pred hc------cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhc-cCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 229 IL------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC-DHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 229 ~~------~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
+. --.-...|..+-+.+.-+|+++.+...|+.-.... +.|-.. ....+..|.++|.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 21 11122334444455556678888888877644321 112221 24567778888888999999988887532
Q ss_pred -------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHh---hh-cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 038206 301 -------KRD--LTSWNSIILGFALHGRAEAALKYFDRLV---VE-ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 301 -------~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
.+. ..+.-+|-..|.-..++++|+.++.+-. ++ ....-....+.+|-.++...|.-++|..+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333 3355567777777788888888876531 11 1122334678888889988898888887665543
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.69 E-value=0.72 Score=42.98 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=66.6
Q ss_pred hhHHHHHHhcCC--CCChhhHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC-------
Q 038206 83 LDYAFRVFYQIE--NPNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF------- 149 (614)
Q Consensus 83 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~------- 149 (614)
+-.-++.|...+ ++|-.+|-+++..|... ++..+=....++.|.+-|+. -|..+|+.||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHH
Confidence 344456676666 57777887777776543 14455555667888888888 78888888887664422
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 150 ---------AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 150 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
.-+-+..++++|...|+.||..+--.|++++++.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 122345667777777777777776667766665554
No 232
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.65 E-value=5 Score=40.95 Aligned_cols=180 Identities=16% Similarity=0.123 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC
Q 038206 70 IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149 (614)
Q Consensus 70 ~~~~li~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 149 (614)
+-|+++..|..|-+....+.++.| ..-++|.-+..+ ....-...+-.+|..-| -+...|-.+++.|...
T Consensus 44 ~k~si~~lyisg~~~~s~~~l~d~------~l~~~~~~f~~n-~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en- 112 (711)
T COG1747 44 SKNSIIALYISGIISLSKQLLDDS------CLVTLLTIFGDN-HKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN- 112 (711)
T ss_pred hhhhhHHHHHHHHHHhhhccccch------HHHHHHHHhccc-hHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-
Confidence 456777777766555555554433 355678888888 77777888889999888 6788899999999887
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------C---hhHHHHHHHHHHhcCChhHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------S---LVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~---~~~~~~li~~~~~~g~~~~A 220 (614)
..+.-..+|+.+++..+. |+....-|...|-+ ++.+.+...|.....+ + ...|.-++..- ..+.+..
T Consensus 113 ~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~f 188 (711)
T COG1747 113 GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFF 188 (711)
T ss_pred CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHH
Confidence 566777888888887654 55555667776665 8888888888765221 1 12566665532 2456666
Q ss_pred HHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 221 LKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 221 ~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
+.+..+++.. ..--.+.+.-+-.-|....++.++.++...+.+.
T Consensus 189 l~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 189 LRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 6666666554 3334445555556677777888888888777765
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.46 E-value=1 Score=45.46 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL----EHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 339 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
+...++.+-.+|.+.|++++|...|+..++ +.|+. ..|..+..+|.+.|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347788888999999999999999999864 45653 35889999999999999999999876
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.22 E-value=6.4 Score=33.29 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA-GNIDEALHLVSNMPMKPDAVIWRSLLDAC 418 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 418 (614)
...++..|.+.+.++++.-++..+.. +...++.+... ++++.|.+++.+-. +...|..++..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 33455555555555555555544411 11222333333 55666666665422 445566555554
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.02 E-value=18 Score=37.97 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhcCChhHHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNS-LIHFYASCGHLDLANKVFDNMLER-------SLVSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~ 221 (614)
+.+.+.+++..+.+. -|+...|.- --..+...|++++|.+.|+..... ....+--+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444455555555443 223222221 223344455555555555543210 1122223333444455555555
Q ss_pred HHHHHhhhc
Q 038206 222 KLFRRMQIL 230 (614)
Q Consensus 222 ~~~~~m~~~ 230 (614)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.96 E-value=9.8 Score=35.47 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--C-Chh---hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--P-NSF---TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~-~~~---~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
.+|+.-+.-+-+|++++|.+.|+.+.. | +.. +--.++-++-+. +++++|+..+++..+.....|| ..|..-|
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 688888888877999999999988875 2 111 222345567777 8999999999888887644233 3466666
Q ss_pred HHHHcc-------CCcHHHHHHHHHH---HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH-HH-HHHHH
Q 038206 143 KACAYL-------FAFSQGKQAHAHI---FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-WN-VMIDA 210 (614)
Q Consensus 143 ~~~~~~-------~~~~~a~~~~~~~---~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~-~~-~li~~ 210 (614)
.+++.. .|...+++-+..+ ++. .+.+..+- +|..-...+. |... ++ .+..-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~--------------dA~~~i~~~~--d~LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYAP--------------DAKARIVKLN--DALAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcchh--------------hHHHHHHHHH--HHHHHHHHHHHHH
Confidence 655422 2222233332222 221 11111111 1111000000 1111 11 23456
Q ss_pred HHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 211 FVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
|.+.|.+..|..-+++|.+. ..-....+..+..++-..|..+++...-..+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 77888888888888888776 122223344455566666666666655554443
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.94 E-value=8 Score=39.99 Aligned_cols=153 Identities=9% Similarity=-0.013 Sum_probs=85.0
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (614)
++++++.+..+.=.-.. . .+..-...+++-+-+.|..+.|+++-. |+ ..-.+...++|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~-~-i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLP-N-IPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGG-G---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhcc-c-CChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHH
Confidence 67777665553111000 0 123446677777777787777776632 22 2234556678888888888
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc
Q 038206 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272 (614)
Q Consensus 193 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (614)
.++.. +...|..|.....+.|+++-|.+.|.+... +..++-.+.-.|+.+.-.++-...... |
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~---~---- 403 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER---G---- 403 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT---T----
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc---c----
Confidence 76655 566888888888888888888888887752 444444555555555555554444443 2
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhc
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFES 298 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (614)
-+|....++.-.|++++..+++.+
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 244444555555666666555543
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=4.9 Score=38.69 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=100.1
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
-.|+..+|-..++++.+..+.|...+...-.+|.-.|+.+.-+..++.+...-..+++...++-..+.-++..+|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 35777777777888877777777777777788888888877777777776532223333333334444455689999999
Q ss_pred HHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 293 RQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN---SITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 293 ~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
++.-++..+- |.-+-.+....+-.+|+..++.++..+- ...--..+ ..-|-...-.+...+.++.|.++|+.-
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t-ed~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT-EDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc-ccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9998877643 4445555666677789999999888764 22111111 122333333455668899999998754
Q ss_pred H
Q 038206 367 I 367 (614)
Q Consensus 367 ~ 367 (614)
+
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.64 E-value=12 Score=37.53 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHhc-CChhHHHHHHhcCCCC-C--hhh-HH---HHHHHHHc---CCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 77 FASF-ADLDYAFRVFYQIENP-N--SFT-WN---TLIRACAR---SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~~-~--~~~-~~---~li~~~~~---~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
.|.. .+++...++++.++.+ + ... -+ ...-++-+ . |+.++|++++..+...... ++..||..+.+.+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~~~~~-~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLESDEN-PDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHhccCC-CChHHHHHHHHHH
Confidence 3555 7777888887777652 1 111 11 11123333 4 7777888887775555445 6777777666654
No 240
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.81 E-value=20 Score=36.28 Aligned_cols=384 Identities=11% Similarity=0.084 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHH--HcCCCCchHHHHHHHHHHHc--CCCC----------
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSFTWNTLIRAC--ARSVDAKPQAIVLFQRMIEQ--GNVL---------- 132 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~~~~~~~A~~~~~~m~~~--~~~~---------- 132 (614)
...+.++++|-..+++..........+ |. ..|-.+..++ -+. +.+++|++.+..-... +...
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 345667777766666666555554443 32 2233333322 233 6777777776655443 2110
Q ss_pred -CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 038206 133 -PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV----SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207 (614)
Q Consensus 133 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 207 (614)
+|-.-=+.....+...|++.+|+.+++.+...=++ -+..+|+.++-++++.=-++.- +.+...=..-|--|
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~----e~~s~dl~pdyYem 200 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELK----ESMSSDLYPDYYEM 200 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHH----HhcccccChHHHHH
Confidence 11111134455667788888888888777664443 6777888877777654222111 11111101122222
Q ss_pred HHHHHhcC-------------------------------ChhHHHHHHHHhhhc-cCCChhhH-HHHHHHHHhhCchhHH
Q 038206 208 IDAFVQFG-------------------------------EFDSALKLFRRMQIL-FEPDGYTF-QSITSACAGLATLSLG 254 (614)
Q Consensus 208 i~~~~~~g-------------------------------~~~~A~~~~~~m~~~-~~pd~~t~-~~ll~a~~~~~~~~~~ 254 (614)
|..|.+.= +..--++++..-.+. +.|+.... ..+...+.. +.+.+
T Consensus 201 ilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~ 278 (549)
T PF07079_consen 201 ILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV 278 (549)
T ss_pred HHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence 22222211 111112222222222 55553322 223333222 33444
Q ss_pred HHHHHHHHHhccCCCCc----cccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHH-------HHHHHHHHH----hc
Q 038206 255 MWAHAYILRHCDHSLVT----DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTS-------WNSIILGFA----LH 317 (614)
Q Consensus 255 ~~~~~~~~~~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~-------~~~li~~~~----~~ 317 (614)
.++-+.+... .+.+ =..++..++....+.++...|.+.+.-+. +|+... -..+-+..+ ..
T Consensus 279 ~~~ce~ia~~---~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~ 355 (549)
T PF07079_consen 279 GHFCEAIASS---KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESY 355 (549)
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHH
Confidence 4443333332 1111 13356677777788888888877776544 443321 111122222 12
Q ss_pred CCHHHHHHHHHHHhhhcCCCccHHHHHHHHH---HHhccCC-HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH----HHH
Q 038206 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLS---ACNHRGM-VSEGRDYFDVMINEYNITP-VLEHYGCLVDL----LAR 388 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~---a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~----~~~ 388 (614)
-+...-+.+|++. +...+.--. ....++. -+-+.|. -++|..+++.+.+ +.| |..+-|.+... |..
T Consensus 356 Tklr~yL~lwe~~-qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~q 430 (549)
T PF07079_consen 356 TKLRDYLNLWEEI-QSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQ 430 (549)
T ss_pred HHHHHHHHHHHHH-HhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHH
Confidence 2344456666665 444332222 1111222 2344454 7888888888864 333 44443333221 211
Q ss_pred c---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH-HHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 389 A---G---NIDEALHLVSNMPMKP----DAVIWRSLLDA-CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 389 ~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
+ . ++-.-..++++.++.| +...-|.|-.| |.-.+|++.++.-.-..+.+..| ++.+|..++-.....
T Consensus 431 aLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 431 ALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMEN 508 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHH
Confidence 1 1 1112233445555544 33444555444 22567899988888888877766 489999999999999
Q ss_pred CChhhHHHHHHHH
Q 038206 458 RRWNDVGLVRKLM 470 (614)
Q Consensus 458 g~~~~a~~~~~~m 470 (614)
.++++|+.++..+
T Consensus 509 k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 509 KRYQEAWEYLQKL 521 (549)
T ss_pred hhHHHHHHHHHhC
Confidence 9999999999764
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.80 E-value=14 Score=38.82 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-----HHHHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSPNS-----ITFVGVLSACN----HRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
+++...=.|+-+.+++++.+-.+..++.-.. .+|..++..+. .....+.+.+++..+.++ -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444566666666665542222232222 22333333332 245677888888888653 35544443
Q ss_pred -HHHHHHHHcCCHHHHHHHHHhCCC-C------CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHH-H
Q 038206 381 -CLVDLLARAGNIDEALHLVSNMPM-K------PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL-S 451 (614)
Q Consensus 381 -~li~~~~~~g~~~~A~~~~~~m~~-~------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~ 451 (614)
.-...+...|++++|.+.|++.-. + +....|..... + ....++++|.+.|.++.+...- ....|.-+ .
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~-~-~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC-H-MFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH-H-HHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 334556678889999888886421 1 22333443332 3 4557899999999999887655 55566544 3
Q ss_pred HHHhhcCCh-------hhHHHHHHHHHh
Q 038206 452 RVYASARRW-------NDVGLVRKLMTD 472 (614)
Q Consensus 452 ~~~~~~g~~-------~~a~~~~~~m~~ 472 (614)
.+|...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445667777 788888877644
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=6.1 Score=39.20 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
-..|.+.|++..|...|++. .. .|. +...-+.++...... . -..++..|.-.|.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yera-v~------------~l~-~~~~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERA-VS------------FLE-YRRSFDEEEQKKAEA-L--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhHHHhhchHHHHHHHHHHH-HH------------Hhh-ccccCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhh
Confidence 34677778888888877765 21 111 111122222222111 1 1335667888899999
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH-HHHH
Q 038206 391 NIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV-GLVR 467 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~ 467 (614)
++.+|++.-+.. ... +|+-...-=-.++ ...++++.|+..|+++++..|. |...-.-|+.+-.+..+..+. .++|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~-l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQAL-LALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877765 333 4666655566677 7889999999999999999999 877777777777666655554 7788
Q ss_pred HHHHhC
Q 038206 468 KLMTDK 473 (614)
Q Consensus 468 ~~m~~~ 473 (614)
..|-.+
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888654
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.43 E-value=2.7 Score=39.35 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC--chhHHHHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSL 176 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l 176 (614)
.|+.-+..+-. |++.+|...|...++..... -....+--|..++...|+.+.|..+|..+.+.-.+. -+...--|
T Consensus 144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44444433322 44555555555554443100 011223334444555555555555555444422110 11223333
Q ss_pred HHHHHhcCCHHHHHHHHhhc
Q 038206 177 IHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m 196 (614)
.....+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 33444455555555555544
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=17 Score=34.71 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=36.8
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 199 (614)
.....|++.++..++........+ +...--.|..+|...|+.+.|..+++.++..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 445667777777777777765433 3445556777777777777777777777554
No 245
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.36 E-value=32 Score=37.93 Aligned_cols=212 Identities=9% Similarity=0.010 Sum_probs=103.5
Q ss_pred CCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCc--chHHHHHHHHHH-hCCCCCCchHHHHHHHHHHHhc-CCh
Q 038206 8 GGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSM--SQLKQIHAQALR-TALPQQHKTLLIYSRIIHFASF-ADL 83 (614)
Q Consensus 8 ~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~li~~~~~-g~~ 83 (614)
.++.++ |+.......+. .|+. .|+.+++++... +.....+..+.. .+..+.| . .+...|-..|.. |..
T Consensus 22 ~~qfkk---al~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~-~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 22 SSQFKK---ALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-D-LTLQFLQNVYRDLGKL 93 (932)
T ss_pred hHHHHH---HHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-h-HHHHHHHHHHHHHhhh
Confidence 344444 55666665443 2332 244555554322 222233322221 1233234 5 778888888888 888
Q ss_pred hHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC----------Cc
Q 038206 84 DYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF----------AF 151 (614)
Q Consensus 84 ~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~----------~~ 151 (614)
++|..++++..+ |+......+.-+|++. +.+.+-...=-+|-+.- + -+.+.|=++++.....- -+
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~~-p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKNF-P-KRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-C-cccchHHHHHHHHHHhccCCcccccchhH
Confidence 888888888766 5544444455567776 66654333322332221 1 23444444444432211 12
Q ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhh-----cCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 152 SQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDN-----MLERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 152 ~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
..|....+.+++.+ -.-+..-.-.-.......|+.++|++++.. ...-+...-|--+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455555555543 111111112222334456778888887732 122233333444555555666666555555
Q ss_pred Hhhhc
Q 038206 226 RMQIL 230 (614)
Q Consensus 226 ~m~~~ 230 (614)
+....
T Consensus 251 ~Ll~k 255 (932)
T KOG2053|consen 251 RLLEK 255 (932)
T ss_pred HHHHh
Confidence 55443
No 246
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.70 E-value=6.6 Score=33.82 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=59.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVL-EHYGCLVDLLARAGNIDEALHLVSNMPM-KPDAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~~~~~~~~~~~ 426 (614)
.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++.- .|....-..|+.-|+...++ .
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D-~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD-P 94 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC-h
Confidence 3356778888888888884 455542 2222334457788999999999999843 35555566677666344444 3
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 038206 427 LSEEVAKQVIESEGGICS 444 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~ 444 (614)
.=.....++.+.+++|+.
T Consensus 95 ~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHHhcCCChHH
Confidence 445556667777766444
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.56 E-value=8.9 Score=32.33 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=25.2
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.+.|++++|.+.|+.+..++...| .....-.|+.+|.+.|++++|...+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555555544333332 2223334555555555555555544443
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.47 E-value=26 Score=35.47 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRS-LLDA 417 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~ 417 (614)
..|...+++-.+..-++.|+.+|-...+. | +.+++..+++++.-++. |+..-|.++|+-- ..-||...|.- .+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44556677777778889999999999764 6 67789999999987764 7778888888753 33466555432 3333
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCC-CCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGG-ICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+ ...++-+.|..+|+...+.-.+ --...|..++.--..-|+...+..+-++|.+
T Consensus 476 L-i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 L-IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred H-HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 3 6667888888888855443211 0136777777777777887777666655543
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.92 E-value=6.1 Score=38.41 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=80.8
Q ss_pred hhhHHHHHHhccC-cchH----HHHHHHHHHhCCCCCCchHHHHHH--HHHHHhc-----CChhHHHHHHhcCCC-----
Q 038206 33 HSSLLSSLTECKS-MSQL----KQIHAQALRTALPQQHKTLLIYSR--IIHFASF-----ADLDYAFRVFYQIEN----- 95 (614)
Q Consensus 33 ~~~~~~~l~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~~--li~~~~~-----g~~~~A~~~f~~m~~----- 95 (614)
..+++++|..-.. .... ..++..+.+.|+. .+ . +++-+ +|..... -....|..+|+.|.+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk-~~-~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFK-RS-E-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccC-cc-C-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 5556666665555 2222 7788888888887 65 5 54433 3333311 245678888888875
Q ss_pred --CChhhHHHHHHHHHcCCCCc----hHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccCC--cHHHHHHHHHHHHhCC
Q 038206 96 --PNSFTWNTLIRACARSVDAK----PQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLFA--FSQGKQAHAHIFKRGL 166 (614)
Q Consensus 96 --~~~~~~~~li~~~~~~~~~~----~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~ 166 (614)
++-.++.+++.. .. .++ +.+...|+.+...|..+-|.. ..+.+|..+..... ...+..+++.+.+.|+
T Consensus 137 Ts~~D~~~a~lLA~--~~-~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TS-EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred cCccchhHHHHHhc--cc-ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 456666666655 22 333 345677888888776634442 33334433332222 3366777888888887
Q ss_pred CCchhHHHHH
Q 038206 167 VSDVYINNSL 176 (614)
Q Consensus 167 ~~~~~~~~~l 176 (614)
++....|..+
T Consensus 214 kik~~~yp~l 223 (297)
T PF13170_consen 214 KIKYMHYPTL 223 (297)
T ss_pred ccccccccHH
Confidence 7766655533
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=88.89 E-value=2.7 Score=36.31 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCC--CC-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Q 038206 70 IYSRIIHFASFADLDYAFRVFYQIE--NP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146 (614)
Q Consensus 70 ~~~~li~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~ 146 (614)
+|..--+.|..|++++|..+|.-+- .| |..-|..|-..+-.. +.+++|+..|......+. -|...+-....++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc--CCCCccchHHHHHH
Confidence 3444444555577777777776543 22 333333333333344 777777777766655442 23444445556666
Q ss_pred ccCCcHHHHHHHHHHHH
Q 038206 147 YLFAFSQGKQAHAHIFK 163 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~ 163 (614)
..|+.+.|+..|...+.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 66777777776666655
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.65 E-value=13 Score=30.83 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
.+..+....+.|+-++-.++++.+.+.-.|++.....+..||.+.|+..++..++..+-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566666666666666666665444555556666666666666666666665555554
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.46 E-value=36 Score=35.83 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=120.8
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC--CCccHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEES--FSPNSITFVGV 346 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g--~~p~~~t~~~l 346 (614)
+..+|+..++.-.+.|+.+.+.-+|+...-| =...|--.+.-.-..|+.+-|..++..- .+-- -.|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~-~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA-CKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh-hhhcCCCCcHHHHHHHH
Confidence 5678899999999999999999999988755 2234555555555558888888777654 2221 22333333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHHH---
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEAL---HLVSNM-PMKPDAVIWRSLLDAC--- 418 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~~--- 418 (614)
+ +-..|+...|..+++.+.++ . |+ +..-..-+.+..+.|..+.+. +++... +.+-+..+...+.--+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 45678999999999999774 3 54 333344566777888888887 444443 2222222222222211
Q ss_pred -HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 419 -CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 419 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
....++.+.|..++.++.+..|. +...|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCCc
Confidence 13447889999999999999988 88889999888776653
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.33 E-value=14 Score=31.11 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhc-CCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 038206 312 LGFALHGRAEAALKYFDRLVVEE-SFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~~-g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (614)
....+.|++++|.+.|+.+ ... ...| ....-..++.++.+.+++++|...++..++-+.-.|++ -|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L-~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEAL-DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHH-HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 3445678888888888877 332 1111 22445567777888888888888888887655555543 34455555544
No 254
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.31 E-value=11 Score=31.84 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=51.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhcCchHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVL-EHYGCLVDLLARAGNIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
..++.+++..+++.|. -+.|+. ..-..-.-.+...|++++|.++|++..-.+ ....-..|+.-|....|| ..=.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D-p~Wr 97 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD-AEWH 97 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC-hHHH
Confidence 4778888888888874 445532 222223344678899999999999885443 333344455444233343 2334
Q ss_pred HHHHHHHHhcCCCCc
Q 038206 430 EVAKQVIESEGGICS 444 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~ 444 (614)
....++++.+.+|+.
T Consensus 98 ~~A~~~le~~~~~~a 112 (153)
T TIGR02561 98 VHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHHhCCCHhH
Confidence 444555555555333
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=4.8 Score=39.90 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCC------------------CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHH
Q 038206 178 HFYASCGHLDLANKVFDNMLE------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQ 239 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~ 239 (614)
+.|.+.|++..|..-|+.... .-+.+++.+..+|.+.+++.+|++.-++.+..-++|.-..-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356778888877777665311 02346777888888999999999888888766666666666
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 240 SITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 240 ~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
---.|+...++++.|+..|..+.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 6666777777777777777777764
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.72 E-value=3.6 Score=39.19 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----cCCCccHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVE-----ESFSPNSITFVGV 346 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~g~~p~~~t~~~l 346 (614)
++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++ .. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l-~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL-KKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH-HHHhhhhcCCCccHHHHHHH
Confidence 677889999999999999999988763 27789999999999999999999999887 43 4666666555544
Q ss_pred HHH
Q 038206 347 LSA 349 (614)
Q Consensus 347 l~a 349 (614)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.66 E-value=24 Score=32.95 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH---HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVY---VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|.-+..+.|.+..|..-++++++.-++ ...+. -.+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 333448889999999999999998666 44444 4567889999999999988766654
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.75 E-value=10 Score=32.62 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhc----CChhHHHHHHhcCCC--CChhhHHHHH-HHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHH
Q 038206 69 LIYSRIIHFASF----ADLDYAFRVFYQIEN--PNSFTWNTLI-RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141 (614)
Q Consensus 69 ~~~~~li~~~~~----g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~l 141 (614)
.+.+.||..... ++.+++..+++.+.- |.......+- .-+.+. |++.+|+.+|+++.... |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~---~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERA---PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccC---CCChHHHHH
Confidence 455666665554 788888888887743 4433322221 134455 88999999999887654 444434444
Q ss_pred HHHHHccCCcHHHHHHH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 142 LKACAYLFAFSQGKQAH-AHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
+..|..... +...+.+ +++...+-.|+. ..|+..+....+...|..
T Consensus 84 lA~CL~~~~-D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALG-DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444433322 2233333 345554433332 334454444444444333
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.72 E-value=3.6 Score=39.20 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.++..+ ...|+.+.+...++++.+..|- +...|..++.+|.+.|+...|...++.+.
T Consensus 158 ~lae~~-~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEAL-IACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHH-HhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444 4444555555555555555555 55555555555555555555555554443
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=8.3 Score=37.22 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=111.6
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH----HHHHcCC
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD----LLARAGN 391 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~ 391 (614)
-+|+..+|-..++++ ....+.|...+.-.=.+|...|+.+.-...++.+.. ...|+...|.-+=. ++..+|-
T Consensus 115 ~~g~~h~a~~~wdkl--L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKL--LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHH--HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 378888888889887 334566778888888899999999999999998864 45666655554444 4457999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhhcCChhhHHHH
Q 038206 392 IDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG---ICSGVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 392 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
+++|++.-++. .+.| |...-.++-..+ ...++..++.++..+-...=.+ .-...|-...-.+...+.++.|.++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl-em~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVL-EMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHH-HhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999998886 5554 566666777777 7888888888876654332111 0123344555567778999999999
Q ss_pred HHHHHhCCCccC
Q 038206 467 RKLMTDKGVTKE 478 (614)
Q Consensus 467 ~~~m~~~g~~~~ 478 (614)
|+.=.-+.+.++
T Consensus 270 yD~ei~k~l~k~ 281 (491)
T KOG2610|consen 270 YDREIWKRLEKD 281 (491)
T ss_pred HHHHHHHHhhcc
Confidence 986544444433
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.38 E-value=10 Score=36.97 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------hcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH---HH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVF-------ESMPKR--DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS---IT 342 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~-------~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~---~t 342 (614)
++..+.++.++.|.++++...- .+..+. -..+|--+..++-+.-++.+++.+-..-....|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555556666655543321 111111 12344455555555555566665554331233444422 22
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-----
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNI--TP--VLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKP----- 406 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p----- 406 (614)
..++-.|....+.++++.+.|+...+-..- .| ...+|-.|-..|++..++++|.-+..+. ++.-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334555666777888888888877552111 12 2456778888899988888876554432 3221
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-CchhH----HHHHHHHhhcCChhhHHHHHHH
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-CSGVY----VLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.......|--++ +..|.+..|.+..++..++.... |..+| ..+.++|-..|+.+.|+.-++.
T Consensus 205 r~~~lyhmaVal-R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 205 RAMSLYHMAVAL-RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 112333455567 88888888888888876653220 23333 4678888888888887766654
No 262
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.94 E-value=6.1 Score=37.73 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-CC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KR--------DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
|.+....+...++..-....+++++...+-++. .| ..++|-.++. .-++++++-++..= ...|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~np-IqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNP-IQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCc-chhcccc
Confidence 666677777777877777888899888776665 22 3344544443 34677888888776 7889999
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 339 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
|..|+..+++.+.+.+++.+|.++.-.|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887776653
No 263
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.89 E-value=0.45 Score=40.66 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=63.7
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhH
Q 038206 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219 (614)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 219 (614)
.+++.+.+.+.+....++++.+.+.+...+....+.|+..|++.++.+...++++... ......++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHH
Confidence 4566777778888888888888887766778889999999999988888888887432 2444567777777777778
Q ss_pred HHHHHHHhh
Q 038206 220 ALKLFRRMQ 228 (614)
Q Consensus 220 A~~~~~~m~ 228 (614)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777764
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.87 E-value=10 Score=31.29 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc-CCCCc---hhHHHHHHHHhhcC
Q 038206 385 LLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-GGICS---GVYVLLSRVYASAR 458 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g 458 (614)
+++..|+++.|++.|.+. .+- .....||.=-.++ +-.|+.++|+.-+++.+++. ++ .. ..|+.-...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~-RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQAL-RLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHH-HHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456677777777777665 222 2456677777777 77777777777777777763 33 21 23455566677778
Q ss_pred ChhhHHHHHHHHHhCCC
Q 038206 459 RWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~g~ 475 (614)
+-+.|..=|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888877777766664
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.85 E-value=11 Score=32.84 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC
Q 038206 278 SLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m 299 (614)
+|.-+-.|.|++.+|.+.|..+
T Consensus 172 ALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHH
Confidence 4444444555555555555544
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.82 E-value=1.4 Score=27.01 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 446 VYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+|..|.++|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999988743
No 267
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=41 Score=33.74 Aligned_cols=147 Identities=11% Similarity=-0.008 Sum_probs=75.3
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHH--HHHhcCCHHHHHHHHhcCCCCCHH---------------HHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID--MYCKCGSLDIARQVFESMPKRDLT---------------SWN 308 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~m~~~~~~---------------~~~ 308 (614)
...++.+.+.++-..+.+. .....+..+++ ++.-.++.+.|...|++-..-|.. .|.
T Consensus 180 ~~~~~~~~a~~ea~~ilkl------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKL------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhcccchhHHHHHHHHHhc------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 4556666666655555554 01122222332 223346667777777765532221 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhh---cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVD 384 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m~~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 384 (614)
-=-.-..++|.+.+|.+.+.+. .. ..++|+...|........+.|++++|+.--+... .+.|. +..|-.-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Ytea-l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEA-LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHh-hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHH
Confidence 1122335678888888888765 22 1234444555555556677788888877665553 23322 112222223
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 038206 385 LLARAGNIDEALHLVSNM 402 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m 402 (614)
++.-.+++++|.+-|+..
T Consensus 330 c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334456677777766654
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.78 E-value=1.5 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888754
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=85.77 E-value=45 Score=34.20 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHh--------c-cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSI-TFVGVLSACN--------H-RGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLA 387 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~--------~-~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 387 (614)
..+.|+.+|.+......+.|+.. .|..+..++. . .....+|.++-+...+ +.| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 35577888887622345666653 2322222211 1 2334556666666643 333 6666667777778
Q ss_pred HcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhhcCChhh
Q 038206 388 RAGNIDEALHLVSNM-PMKPDAV---IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG-VYVLLSRVYASARRWND 462 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 462 (614)
-.|+++.|..+|++. ...||.. .|..++. .-.|+.++|.+.+++.+++.|.--.. ..-..+++|... ..++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~---~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVH---FHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH---HHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhh
Confidence 888899999999987 4566543 3333333 55799999999999999998872222 222344567655 4566
Q ss_pred HHHHHH
Q 038206 463 VGLVRK 468 (614)
Q Consensus 463 a~~~~~ 468 (614)
|.+++-
T Consensus 426 ~~~~~~ 431 (458)
T PRK11906 426 NIKLYY 431 (458)
T ss_pred hHHHHh
Confidence 666653
No 270
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.07 E-value=22 Score=33.52 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH-HHHHHHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPDA-VIWRSLLD 416 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-~~~~~ll~ 416 (614)
|+.-+.. .+.|++..|.+-|...++++.-.+ ....+-.|...+...|++++|..+|..+ |-.|-. ...--|-.
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444432 334445555555555554221111 1223334555555555555555555444 211211 22222222
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.. ...|+.+.|...++++.+.-|.
T Consensus 224 ~~-~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SL-GRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HH-HHhcCHHHHHHHHHHHHHHCCC
Confidence 33 4555666666666666665555
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=46 Score=36.59 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=73.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHH
Q 038206 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~ 358 (614)
..+-+.+.|+.++|...|-+-..--.. ..+|.-|....+..+-..+++.+ .+.|+.-... -..|+.+|.+.++.+.
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L-~~~gla~~dh-ttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEAL-HKKGLANSDH-TTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHH-HHcccccchh-HHHHHHHHHHhcchHH
Confidence 344445567777776666443311111 12344445555555555666666 5555543322 2346667777777766
Q ss_pred HHHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 038206 359 GRDYFDVMINEYNIT-PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435 (614)
Q Consensus 359 a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 435 (614)
-.++.+..- + |.. -|. ...+..+.+.+-+++|..+-.+.+. +......++.-. +++++|.+.++.+
T Consensus 450 L~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ille~~----~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELLATKFKK--HEWVLDILLEDL----HNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHHHHh----cCHHHHHHHHhcC
Confidence 655554332 1 111 122 2355666666666666666655442 444445554443 6777777766543
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.99 E-value=3 Score=24.91 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+|..+...+ ...|++++|+..|+++++..|+
T Consensus 3 ~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAY-FQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-HHhCCchHHHHHHHHHHHHCcC
Confidence 455666666 6677777777777777776654
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.99 E-value=27 Score=30.98 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRD------LTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+..+.+.|++.|+.+.|.+.|.++.+.. +..+-.+|....-.+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44555556666666666666665554321 123344444444455555555554444
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=84.57 E-value=8.9 Score=31.56 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 179 FYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+.+..|+++.|++.|.+.. ......||.=..++--.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777776642 23456677777777777777777776666654
No 275
>PRK11906 transcriptional regulator; Provisional
Probab=84.34 E-value=23 Score=36.18 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc
Q 038206 355 MVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLAR---------AGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH 422 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 422 (614)
..+.|..+|........+.|+ ...|..+...+.. .....+|.++-++. ...| |......+-.+. ...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~-~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT-GLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-Hhh
Confidence 356778888888754566775 3444444433322 22344566665554 3333 555555555555 556
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++++.|...|+++..++|+ ...+|........-+|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7799999999999999999 888999999999999999999999987443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.75 E-value=49 Score=32.97 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc---cHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP---NSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 301 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.....+|..+...+.+.|+++.|...+.++ ...+..+ +......-....-..|+..+|...++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~-~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRL-FQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHH-hccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567888888888899999888888877 4432111 122223334445566777888887777765
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.71 E-value=29 Score=30.30 Aligned_cols=41 Identities=7% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
++...+.+.+++|+...+..+++.+.+.|+...-..++..-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~ 55 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH 55 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 34455556677777777777777777777666655555443
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.79 E-value=4 Score=26.33 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555666666666666666655543
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.60 E-value=4.5 Score=23.97 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
|..+-..+ ...|++++|++.+++.++..|+
T Consensus 4 ~~~lg~~~-~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAY-YQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHHHCcC
Confidence 44444455 6666666666666666666554
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.49 E-value=8.1 Score=34.32 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERS------LVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566667777777777777776664432 12344555555566666666666555543
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.19 E-value=14 Score=28.99 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
-+..+-++.+ -...+.|+.....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 27 we~rrglN~l-~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNL-FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHH-TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHH-hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3556666666 6677889999999999999999999999999998876544 33336776664
No 282
>PRK09687 putative lyase; Provisional
Probab=80.92 E-value=55 Score=31.58 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
++..+-...+.++++.|+......+.+.+..+++ ....+.++...|.. +|+..+..+ .. -.||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l-~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTL-LY--KFDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHH-Hh--hCCChhHHHHHHHHH
Confidence 3455555566666666664433334444433332 23455666666664 566666655 22 133554444444444
No 283
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.57 E-value=10 Score=29.40 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
++.+-++.+...+.. |++....+.|+||.+.+|+..|.++++.++... ..+..+|..++
T Consensus 25 e~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666666667 888888888888888888888888887666321 11333555444
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.47 E-value=65 Score=32.10 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC---CchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI---CSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
....+|..+...+ ++.|+++.|...+.++...++.. .+.....-+...-..|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~a-Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLA-RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHH-HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566899999999 99999999999999998866432 3455556677788889999999999888763
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.45 E-value=83 Score=33.28 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-----PMKPDAVIWRSL 414 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l 414 (614)
..+|...+.--...|+.+...-+|+...- .+.-=...|--.+.-....|+.+-|..++... +-.|......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35566666666666666666666665532 22222333444444444557666666655543 222344333333
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
++...|++..|..+++.+.+.-|. ....-..-+.+..+.|..+.+.
T Consensus 375 ---f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 ---FEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred ---HHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhHHHHhcchhhhh
Confidence 334467777777777777765544 2222223345556666666666
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.88 E-value=80 Score=32.74 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP-M-KPD--AVIWRSLLDACCK 420 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~~ 420 (614)
.+..++-+.|+.++|.+.|.+|.+++...........|+..|...+.+.++..++.+.. + -|. ...|+..+-.. +
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka-R 342 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA-R 342 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH-H
Confidence 34555567778888888887777654333344456677788888888888877777663 1 133 33455444333 3
Q ss_pred hcCc---------------hHHHHHHHHHHHHhcCC
Q 038206 421 KHAS---------------VVLSEEVAKQVIESEGG 441 (614)
Q Consensus 421 ~~~~---------------~~~a~~~~~~~~~~~~~ 441 (614)
..++ -..|.+...++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 2222 12355677777777766
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.58 E-value=14 Score=28.64 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
+.-++.+-++.+ ....+.|+.....+.|.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l-~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNL-FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 444566666666 6667888888888888999999999999998888864333 24445665543
No 288
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.52 E-value=82 Score=32.68 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKR------DL---TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
++....|.+.|-+ ++.+.+...|.++..+ +. ..|.-++.. -..+.+..+.+...+....|..--.+.+
T Consensus 132 vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~ 208 (711)
T COG1747 132 VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLM 208 (711)
T ss_pred HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHH
Confidence 3334444444444 5555555555544311 11 245555431 1345666666666663445555555666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.-+-.-|....++++|.+++..+.+
T Consensus 209 qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 209 QDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHhccccCHHHHHHHHHHHhh
Confidence 6666777777888888887776654
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.11 E-value=57 Score=30.66 Aligned_cols=242 Identities=15% Similarity=0.253 Sum_probs=141.2
Q ss_pred CCHHHHHHHHhhcCC--C--C---hhHHHHHHHHHHhcCChhHHHHHHHHhhhc----c--CCChhhHHHHHHHHHhhCc
Q 038206 184 GHLDLANKVFDNMLE--R--S---LVSWNVMIDAFVQFGEFDSALKLFRRMQIL----F--EPDGYTFQSITSACAGLAT 250 (614)
Q Consensus 184 g~~~~A~~~f~~m~~--~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~pd~~t~~~ll~a~~~~~~ 250 (614)
.+.++|+.-|+...+ + . --+.-.+|..+.+.|++++.++.|.+|..- + .-...+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456677777766522 1 1 223445778888888888888888887543 2 2245567778877777777
Q ss_pred hhHHHHHHHHHHHhccC--CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C-------CHHHHHHHHHH
Q 038206 251 LSLGMWAHAYILRHCDH--SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--------R-------DLTSWNSIILG 313 (614)
Q Consensus 251 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~-------~~~~~~~li~~ 313 (614)
.+.-..+++.-.+.... +-..=-.+-+.|...|...|++.+..+++.++.+ . -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 77666666554432100 0001112344677788888888888888876641 1 12467777888
Q ss_pred HHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh-----ccCCHHHHHH-HHHHHHHhcCC--CCCh---hHHHHH
Q 038206 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN-----HRGMVSEGRD-YFDVMINEYNI--TPVL---EHYGCL 382 (614)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~-~~~~~~~~~~~--~p~~---~~~~~l 382 (614)
|....+-.+-..++++...-..--|-.. ...+|.-|. +.|.+++|-. +|+.. +.+.- .|.. --|-.|
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAF-KNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAF-KNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHH-hcccccCCcchhHHHHHHHH
Confidence 8888777777777776523333334433 344566664 4577777654 44444 32321 2222 235667
Q ss_pred HHHHHHcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 383 VDLLARAGN----IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 383 i~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
..++.+.|- -.+|.- ..-.|.....+.|+.+| ..+ +..+-+++++
T Consensus 279 ANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aY-Q~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAY-QNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHH-hcc-cHHHHHHHHH
Confidence 777777662 222211 12247778889999998 554 4444444443
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.97 E-value=2.4 Score=36.10 Aligned_cols=51 Identities=8% Similarity=0.113 Sum_probs=21.4
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 038206 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 105 i~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
|..+.+. +.+.....+++.+...+.. .+....+.++..+++.++.+....+
T Consensus 14 i~~~~~~-~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 14 ISAFEER-NQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp HHHCTTT-T-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHH
Confidence 3334443 4444444444444444322 3344444444445444443444333
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=63 Score=31.01 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=73.2
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD----LTSWNSIILGFALHGRAE 321 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~ 321 (614)
...++...+...+...... .+-+...--.|...|...|+.+.|..++..++... .....+-|..+.+.....
T Consensus 145 ~~~e~~~~a~~~~~~al~~----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQA----APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhccchhhHHHHHHHHHHh----CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455566666666665554 22335566678889999999999999999988321 111112233333333333
Q ss_pred HHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHHHcC
Q 038206 322 AALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 322 ~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g 390 (614)
+...+-.+. . -.| |...-..+...+...|+.+.|.+.+-.+.++ .|.. |...-..|++.+.-.|
T Consensus 221 ~~~~l~~~~-a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRL-A---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHH-H---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 333333332 2 245 3333444556677778888877665555443 2322 3333444554444433
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.84 E-value=9.6 Score=36.47 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC-------CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN-------PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ 140 (614)
..-..++..-.. .+++++...+-.+.. |+... .+.++-+.+ -++++++.++..=++-|+. ||.++++.
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk--y~pq~~i~~l~npIqYGiF-~dqf~~c~ 140 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK--YDPQKAIYTLVNPIQYGIF-PDQFTFCL 140 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc--cChHHHHHHHhCcchhccc-cchhhHHH
Confidence 444555555554 778888777766653 22221 233444444 3667888888888888888 88888888
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhC
Q 038206 141 ALKACAYLFAFSQGKQAHAHIFKRG 165 (614)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g 165 (614)
+|+.+.+.++...|.++...|....
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888777776654
No 293
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.50 E-value=69 Score=31.22 Aligned_cols=129 Identities=12% Similarity=0.204 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc--cC----CHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCC
Q 038206 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNH--RG----MVSEGRDYFDVMINEYNIT--PVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 320 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~ 391 (614)
+++.+.+++.| .+.|.+-+..+|.+....... .. ....+..+|+.|++++.+- ++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L-~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKL-KEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHH-HHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34567788888 888888888887764433322 22 3456888999998765543 333444444333 3333
Q ss_pred HH----HHHHHHHhC---CCCC-CHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 392 ID----EALHLVSNM---PMKP-DAVIWRSLLDACCKKHAS--VVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 392 ~~----~A~~~~~~m---~~~p-~~~~~~~ll~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.+ .++..|+.+ ++.. |..-+.+-+-+++....+ +.++.++++.+.+.+.++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 32 333344333 3332 333333333333122222 346667777777777775555554443
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.31 E-value=15 Score=33.04 Aligned_cols=44 Identities=14% Similarity=-0.008 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH
Q 038206 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293 (614)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 293 (614)
+.+.+.+++-.+....+.+-.+|+.++.+|++.|.+.|+++.|.
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 33333333333333333344566777777777777777777664
No 295
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.55 E-value=54 Score=29.47 Aligned_cols=195 Identities=17% Similarity=0.123 Sum_probs=122.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMP-----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
...+......+...+.+..+...+.... ......+......+...+....+.+.+... ......+. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA-LALDPDPD-LAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHH-HcCCCCcc-hHHHHHH
Confidence 4556666777777777777777766543 234455666666667777778888888766 33222221 1122222
Q ss_pred H-HHhccCCHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHh
Q 038206 348 S-ACNHRGMVSEGRDYFDVMINEYNI--TPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD--AVIWRSLLDACCKK 421 (614)
Q Consensus 348 ~-a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~ 421 (614)
. .+...|+++.+...+..... ..- ......+......+...++.++|...+... ...|+ ...+..+-..+ ..
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 214 (291)
T COG0457 137 LGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY-LK 214 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH-HH
Confidence 2 57778888888888887743 111 123334444444566778888888887776 33333 56666666666 77
Q ss_pred cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.++.+.+...+.......+. ....+..+...+...|.++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788888888888887766 445555555555566778888877776554
No 296
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.12 E-value=38 Score=36.95 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.7
Q ss_pred hhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCc
Q 038206 5 IVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSM 46 (614)
Q Consensus 5 ~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~ 46 (614)
|.|.|+.++ |+++.+... .++......|...++.+...
T Consensus 121 ~LR~G~~~~---A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 121 CLRCGDYDE---ALEVANENR-NQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHTTT-HHH---HHHHHHHTG-GGS-TTTTHHHHHHHHCTTT
T ss_pred HHhcCCHHH---HHHHHHHhh-hhhcchhHHHHHHHHHHHhC
Confidence 678999997 567775554 34566667788888888654
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.96 E-value=4.6 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHH
Q 038206 169 DVYINNSLIHFYASCGHLDLAN 190 (614)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~ 190 (614)
+...|+.|...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666654
No 298
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.65 E-value=48 Score=31.72 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHH-cCCCCCCcchHHHHHHHHHc-cC-CcHHHHHHHHHHHH-hCCCCchhHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIE-QGNVLPDKHTFPFALKACAY-LF-AFSQGKQAHAHIFK-RGLVSDVYINNSL 176 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~-~~~~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~l 176 (614)
|..++.. + ....+|+.+|+..-- ..+. -|..+...+++.... .+ .+..--++.+.+.. .|-.++..+-...
T Consensus 134 Y~~LVk~---N-~~Vv~aL~L~~~~~~~~~Ii-~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~I 208 (292)
T PF13929_consen 134 YWDLVKR---N-KIVVEALKLYDGLNPDESII-FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISI 208 (292)
T ss_pred HHHHHHh---h-HHHHHHHHHhhccCccccee-eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHH
Confidence 5555532 2 455677777773322 2334 566677777776654 22 22223344444443 2346677777888
Q ss_pred HHHHHhcCCHHHHHHHHhhc-----CCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 038206 177 IHFYASCGHLDLANKVFDNM-----LERSLVSWNVMIDAFVQFGEFDSALKLFRR 226 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (614)
+..+++.+++..-.++++.. +..|...|..+|....+.|+..-..++.++
T Consensus 209 l~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 209 LEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88888888888888888765 334777888888888888887766666554
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.03 E-value=28 Score=29.55 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhc----CChhHHHHHHhcCC--CCCh---hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH
Q 038206 69 LIYSRIIHFASF----ADLDYAFRVFYQIE--NPNS---FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139 (614)
Q Consensus 69 ~~~~~li~~~~~----g~~~~A~~~f~~m~--~~~~---~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~ 139 (614)
.+.+.||..... ++++++..+++.|. +|+. .++-..| +... |++.+|+.+|++....+ +. ..|.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~r-g~w~eA~rvlr~l~~~~---~~-~p~~ 80 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIAR-GNYDEAARILRELLSSA---GA-PPYG 80 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHc-CCHHHHHHHHHhhhccC---CC-chHH
Confidence 455666665554 77888888887764 2433 3333333 3455 88999999998887765 23 2455
Q ss_pred HHHHHHHcc
Q 038206 140 FALKACAYL 148 (614)
Q Consensus 140 ~ll~~~~~~ 148 (614)
..|.++|-.
T Consensus 81 kAL~A~CL~ 89 (153)
T TIGR02561 81 KALLALCLN 89 (153)
T ss_pred HHHHHHHHH
Confidence 555554433
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.51 E-value=12 Score=29.24 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (614)
+...-++.+...+.. |++....+.|+||.+.+|+..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLV-PEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555555556 6777777777777777777777777766654
No 301
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.01 E-value=53 Score=30.30 Aligned_cols=13 Identities=8% Similarity=0.371 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHH
Q 038206 318 GRAEAALKYFDRL 330 (614)
Q Consensus 318 g~~~~A~~l~~~m 330 (614)
+++.+|+++|++.
T Consensus 168 eqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 168 EQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.60 E-value=40 Score=35.52 Aligned_cols=101 Identities=20% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHH
Q 038206 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
...+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+.. -|.+++-.+...|+.+....+-
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHHHH
Confidence 344677888887776543 355678888888888888888888887765 2455555566666655444443
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhc
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES 298 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (614)
....+. |. .|.-.-+|...|+++++.+++.+
T Consensus 716 ~~~~~~---g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQ---GK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhh---cc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 333333 21 23333455556666666666544
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.27 E-value=5.6 Score=24.88 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999987654
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.96 E-value=7.5 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
+|..+...+... |++++|+..|++.++..
T Consensus 3 ~~~~~g~~~~~~-~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQL-GDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHHHHHHC
Confidence 466666666676 77777777777766654
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.45 E-value=55 Score=34.57 Aligned_cols=149 Identities=15% Similarity=0.048 Sum_probs=101.4
Q ss_pred hcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 038206 285 KCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364 (614)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 364 (614)
-.|+++.|..++..++++ .-+.+..-+-+.|..++|+++- ..||. -| ....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s--------~D~d~-rF----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS--------TDPDQ-RF----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC--------CChhh-hh----hhhhhcCcHHHHHHHHH
Confidence 457788888777777633 2344555566677777776543 22332 12 22346788888888765
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 365 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
+.. +..-|..|.++..+.|++..|.+.|.... -|..|+-.+ ...|+-+....+.....+.|.. |.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~-t~~g~~~~l~~la~~~~~~g~~-N~ 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLY-TSSGNAEGLAVLASLAKKQGKN-NL 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhh-hhcCChhHHHHHHHHHHhhccc-ch
Confidence 542 45568899999999999999999987643 366677677 7778877777777777777766 43
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
-..+|...|+++++.+++.+
T Consensus 727 -----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 -----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----HHHHHHHcCCHHHHHHHHHh
Confidence 23456778999999988754
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.35 E-value=14 Score=32.92 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=58.8
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 386 LARAGNIDEALHLVSNM-PMKPD------AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
+.+.|++++|..-|.+. .+-|. .+.|..=..++ .+.+..+.|+.-..+.++++|. ......--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~-iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL-IKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH-HHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 45677777777766654 11121 23333333444 6778888888888888888887 5555555567888888
Q ss_pred ChhhHHHHHHHHHhC
Q 038206 459 RWNDVGLVRKLMTDK 473 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~ 473 (614)
++++|..=++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999998888888764
No 307
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.58 E-value=83 Score=29.32 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=91.4
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 038206 105 IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184 (614)
Q Consensus 105 i~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (614)
-.+|-.. .++++|-..+.+..+-. -+..++-...++ .+.|--+..++.+. .--+..++--..+|..+|
T Consensus 38 AvafRnA-k~feKakdcLlkA~~~y---EnnrslfhAAKa------yEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 38 AVAFRNA-KKFEKAKDCLLKASKGY---ENNRSLFHAAKA------YEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHhh-ccHHHHHHHHHHHHHHH---HhcccHHHHHHH------HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 3455555 77777776666555322 122222222222 33344444444332 122344666777888888
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh------hHHHHHHHHHhhCchhHHHHHH
Q 038206 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY------TFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~------t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
..+.|-..++..-+ ...+-++++|+++|++-..-+.-+.. .+..+-+.+.+...++++-..+
T Consensus 106 spdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 106 SPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred CcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 87777666655311 12233444444444443322111100 0111112222333333332222
Q ss_pred HHH----HHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcC---C----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038206 259 AYI----LRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESM---P----KRDLTSWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 259 ~~~----~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m---~----~~~~~~~~~li~~~~~~g~~~~A~~l 326 (614)
..- .+. .--++ -..+-+.|-.|.-..++..|++.|+.- + ..+..+...|+.+|- .|+.+++.++
T Consensus 174 lKe~~~~~~~---~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 174 LKEGVAADKC---DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHhhhHHHHH---hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 111 111 00111 122444555566667888888888873 2 236677777887774 5677666555
Q ss_pred H
Q 038206 327 F 327 (614)
Q Consensus 327 ~ 327 (614)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.83 E-value=7.2 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 202 VSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877654
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.77 E-value=97 Score=29.73 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHhhh-cCCCccHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 038206 317 HGRAEAALKYFDRLVVE-ESFSPNSITFVGVLSACNH--RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (614)
+....+|+++|+.. .. +.+--|......+++.... ......-.++.+.+...++-.++..+....+..++..+++.
T Consensus 141 N~~Vv~aL~L~~~~-~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGL-NPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhcc-CcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 45566888888754 22 3456677777777776644 22444455666666666677888888889999999999999
Q ss_pred HHHHHHHhCC----CCCCHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 394 EALHLVSNMP----MKPDAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 394 ~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+-.++++... -.-|...|..+|... ...|+.....++..
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li-~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLI-VESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHH-HHcCCHHHHHHHhh
Confidence 9999988762 234788999999999 99999766655554
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.56 E-value=2.9e+02 Score=34.80 Aligned_cols=310 Identities=12% Similarity=0.073 Sum_probs=166.0
Q ss_pred HHHHHHccCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhcC
Q 038206 141 ALKACAYLFAFSQGKQAHAHI----FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN-MLERSLVSWNVMIDAFVQFG 215 (614)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g 215 (614)
+..+-.+.+.+..|...++.- .+. ......|-.+...|+.-+++|....+... ...++ ...-|.-....|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASG 1463 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhc
Confidence 334455666777777777663 111 11122344445578888887777766652 33322 233455566789
Q ss_pred ChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH-HHHHHhcCCHHHHHH
Q 038206 216 EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL-IDMYCKCGSLDIARQ 294 (614)
Q Consensus 216 ~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~ 294 (614)
++..|..-|+.+.+.-++...+++.++..-...+.+....-..+.... ...+....++++ +.+--+.++++..+.
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~----~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII----NRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh----ccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 999999999998876444577788777776666666665543333322 233333333333 445567777777766
Q ss_pred HHhcCCCCCHHHHHHH-H-HHHHhc--CCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHH-------
Q 038206 295 VFESMPKRDLTSWNSI-I-LGFALH--GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF------- 363 (614)
Q Consensus 295 ~~~~m~~~~~~~~~~l-i-~~~~~~--g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~------- 363 (614)
... .+|..+|.+. + ....+. .+.-.-.++.+.+ +..-+.| +.+|+..|.+..+.++.
T Consensus 1540 ~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~-r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENS-RELVIEN--------LSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHH-HHHhhhh--------HHHhhccchHHHHHHHHHHHHHHH
Confidence 655 5566666665 2 222221 2222222344444 2221211 22333332222222211
Q ss_pred ---HHHHHhcCCCCChhHHH------H---HHHHHHHcCCHHHHH-HHHHhCCCCCC-----HHHHHHHHHHHHHhcCch
Q 038206 364 ---DVMINEYNITPVLEHYG------C---LVDLLARAGNIDEAL-HLVSNMPMKPD-----AVIWRSLLDACCKKHASV 425 (614)
Q Consensus 364 ---~~~~~~~~~~p~~~~~~------~---li~~~~~~g~~~~A~-~~~~~m~~~p~-----~~~~~~ll~~~~~~~~~~ 425 (614)
.......++.++..+.+ . ..+-+.+....--|. +.+.....+|+ ..+|-..-.-+ +..|++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAria-R~aG~~ 1686 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIA-RLAGHL 1686 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHH-HhcccH
Confidence 11111123333322211 1 111111111111111 11111112332 45788888888 999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
+.|....-.+.+.++. ..+.-.....-..|+...|..++++-.+...
T Consensus 1687 q~A~nall~A~e~r~~---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRLP---EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhhhcccc---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999988888877743 6777778888899999999999998876554
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.38 E-value=1.1e+02 Score=29.60 Aligned_cols=15 Identities=13% Similarity=-0.152 Sum_probs=8.5
Q ss_pred hcCchHHHHHHHHHH
Q 038206 421 KHASVVLSEEVAKQV 435 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~ 435 (614)
+.++++.|.+.|+-.
T Consensus 258 ~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 258 KAKNYDEAIEWYELA 272 (278)
T ss_pred hhcCHHHHHHHHHHH
Confidence 445666666666543
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.37 E-value=28 Score=31.29 Aligned_cols=68 Identities=4% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCChhHHHHHHHHHHhcCChhHH
Q 038206 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM-------LERSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~~~~~~~~~li~~~~~~g~~~~A 220 (614)
+.|++.|-.+...+.--++....+|...|. ..|.++|..++... .+.|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555554445555555555555 44555555555443 123555666666666666666655
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.33 E-value=9.1 Score=21.35 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHh
Q 038206 174 NSLIHFYASCGHLDLANKVFD 194 (614)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~f~ 194 (614)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555566666666665554
No 314
>PRK09687 putative lyase; Provisional
Probab=69.66 E-value=1.1e+02 Score=29.53 Aligned_cols=80 Identities=6% Similarity=-0.064 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG-RAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ +...+...+..+ . -.+|...-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~-L---~D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM-L---QDKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH-h---cCCChHHHHHHHHHH
Confidence 44444455555555555433333333333444443333344444332 123444444443 2 133444444455555
Q ss_pred hccCC
Q 038206 351 NHRGM 355 (614)
Q Consensus 351 ~~~g~ 355 (614)
.+.++
T Consensus 217 g~~~~ 221 (280)
T PRK09687 217 ALRKD 221 (280)
T ss_pred HccCC
Confidence 55555
No 315
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.46 E-value=36 Score=28.88 Aligned_cols=78 Identities=9% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC---------CChhhHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCCCCcch
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN---------PNSFTWNTLIRACARSVDA-KPQAIVLFQRMIEQGNVLPDKHT 137 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~~~~-~~~A~~~~~~m~~~~~~~p~~~t 137 (614)
...|.+++-.+. +++.....+++.+.. .+-.+|+.++.+.++. .. ---+..+|..|.+.+.+ ++..-
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnS-sSaK~~~~~Lf~~Lk~~~~~-~t~~d 117 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNS-SSAKLTSLTLFNFLKKNDIE-FTPSD 117 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccC-hHHHHHHHHHHHHHHHcCCC-CCHHH
Confidence 456777776666 667666666665542 4566788888888766 44 44577888888887766 88888
Q ss_pred HHHHHHHHHcc
Q 038206 138 FPFALKACAYL 148 (614)
Q Consensus 138 ~~~ll~~~~~~ 148 (614)
|..++++|.+.
T Consensus 118 y~~li~~~l~g 128 (145)
T PF13762_consen 118 YSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcC
Confidence 88888887664
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.45 E-value=14 Score=21.83 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
|..+-..+ ...|+++.|...|++.++..|
T Consensus 4 ~~~lg~~y-~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIY-EQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHH-HHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhhCC
Confidence 44444444 566666666666666666554
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.26 E-value=1.9e+02 Score=31.79 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLT 305 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 305 (614)
.-..|+..|...+++.+|..++-...++++.
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 4445899999999999999999888876543
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.08 E-value=1.1e+02 Score=28.69 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc-----CCCccHHHHHHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE-----SFSPNSITFVGVLS 348 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----g~~p~~~t~~~ll~ 348 (614)
..++--..+|..+|.++.|-..+++.- -...+.++++|++++++- ..- ..+--...+..+-.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqra-lavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRA-LAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHH-HHHHhccchHHHHHHHHHHhhh
Confidence 346666778888888887766665431 112345566666666553 110 00111122223333
Q ss_pred HHhccCCHHHHHHHHHHHHH---hcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC---CC---CCCHHHHHHHHHHH
Q 038206 349 ACNHRGMVSEGRDYFDVMIN---EYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM---PM---KPDAVIWRSLLDAC 418 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~~---~p~~~~~~~ll~~~ 418 (614)
.+.+...+++|-..|..-.. +..--|+ -..|-+.|-.|.-..++..|.+.++.- |- .-+..+...||.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 44455555555444332210 0011122 123445555666667888888888773 21 12566777888887
Q ss_pred HHhcCchHHHHHHH
Q 038206 419 CKKHASVVLSEEVA 432 (614)
Q Consensus 419 ~~~~~~~~~a~~~~ 432 (614)
- .|+.+++..++
T Consensus 239 -d-~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 -D-EGDIEEIKKVL 250 (308)
T ss_pred -c-cCCHHHHHHHH
Confidence 3 45666665554
No 319
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.95 E-value=1.2e+02 Score=29.47 Aligned_cols=91 Identities=24% Similarity=0.207 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch----
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-------PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG---- 445 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 445 (614)
..+-....-|++.|+.+.|.+.+++. +.+-|+..+.+=+.-+...+.-+.+-++..+.+.+.|.+++..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34445556677777777776666542 4455665555544444344444555555666666666554432
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHH
Q 038206 446 VYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
+|..+- +....++.+|..+|-.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLD 206 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHH
Confidence 222221 2233456666665543
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.55 E-value=1e+02 Score=28.24 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 382 (614)
...||-+---+...|+++.|.+.|+.. -+ +.|.- .+...---++.-.|++..|.+=|-..-+.-.-.|-...|--+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~-~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSV-LE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhH-hc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 456777777788888888888888876 33 23321 222211123445677877776555543322223322232222
Q ss_pred HHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC------CCchhHHHHHHHHh
Q 038206 383 VDLLARAGNIDEALHLV-SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG------ICSGVYVLLSRVYA 455 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~ 455 (614)
+ .+.-+..+|..-+ ++.. ..|..-|...|-.+ -- |++. -+.+++++..-..+ .-..||--|..-|.
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~-yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEF-YL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHH-HH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2 2233455555433 3332 34656666666555 22 2211 12333333332211 01467778889999
Q ss_pred hcCChhhHHHHHHHHHhCCC
Q 038206 456 SARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 456 ~~g~~~~a~~~~~~m~~~g~ 475 (614)
..|..++|..+|+.....++
T Consensus 249 ~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 249 SLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccccHHHHHHHHHHHHHHhH
Confidence 99999999999998776554
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.44 E-value=2.3e+02 Score=31.58 Aligned_cols=134 Identities=10% Similarity=0.122 Sum_probs=64.2
Q ss_pred CChhHHHHHHhcCC-CCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 038206 81 ADLDYAFRVFYQIE-NPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159 (614)
Q Consensus 81 g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (614)
|++++|...+-+-. .-++ ..+|.-|... .+..+--..++.+.+.|.. +...-+.||.+|.+.++.+.-.++.+
T Consensus 382 gdf~~A~~qYI~tI~~le~---s~Vi~kfLda-q~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 382 GDFDEATDQYIETIGFLEP---SEVIKKFLDA-QRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred CCHHHHHHHHHHHcccCCh---HHHHHHhcCH-HHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 77777766654332 1111 2245555555 5555666666667776643 55555667777777776665544433
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
..- .|.- .+-....+..+-+.+-.++|..+-..... .....+. .+-..+++++|++.+..+
T Consensus 456 ~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 456 KCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred cCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 222 1100 00122233333344444444443333222 1111222 223356677777666665
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.59 E-value=28 Score=35.48 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=55.4
Q ss_pred cCCHHHHH-HHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 317 HGRAEAAL-KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 317 ~g~~~~A~-~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
.|+...|- +++.-+ +...-.|+.+...+.| ..+.|.++.+.+......+ -+.....+..+++....+.|++++|
T Consensus 302 ~gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAAL-RNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred ccCHHHHHHHHHHHH-HhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 34444332 333333 4444455554444443 3455666666665555422 3333444555566666666666666
Q ss_pred HHHHHhC-C--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 396 LHLVSNM-P--MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 396 ~~~~~~m-~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..+-..| + ++ +......-.... ...|-++++...++++...+|.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa-~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSA-DALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccH-HHHhHHHHHHHHHHHHhccCCh
Confidence 6655554 1 11 111111111122 3445555555555555554433
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.53 E-value=1e+02 Score=27.16 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=80.7
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHH---HHHccCCcHHHHHHHHHHHHhCCCCchhH
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK---ACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 172 (614)
.....|.+-+. +++. +..++|+.-|..+.+.|.. .+.....++ .....|+...|...|+++-+-...|-..-
T Consensus 57 ~sgd~flaAL~-lA~~-~k~d~Alaaf~~lektg~g---~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r 131 (221)
T COG4649 57 KSGDAFLAALK-LAQE-NKTDDALAAFTDLEKTGYG---SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR 131 (221)
T ss_pred cchHHHHHHHH-HHHc-CCchHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh
Confidence 34444555443 4455 7888999999999887733 222222332 34577888888888888876544443331
Q ss_pred -HHHHH--HHHHhcCCHHHHHHHHhhcCCC-C---hhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 173 -NNSLI--HFYASCGHLDLANKVFDNMLER-S---LVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 173 -~~~li--~~~~~~g~~~~A~~~f~~m~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
...|= -.+...|.+++...-.+.+..+ + ...-.+|.-+-.+.|++.+|.++|..+...
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11111 1345677788777777666332 1 223456666777889999999999888765
No 324
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.07 E-value=1.8e+02 Score=29.80 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 380 GCLVDLLARAGNIDEALHLVSNMP--MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..|+.-|...|++.+|.+.+++++ +--...++.+++.+. .+.++-+..+.+++.....|.-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~m-Ekk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVM-EKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhcCce
Confidence 457788899999999999999875 445788999999999 8888877777777776665543
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.85 E-value=1.2e+02 Score=31.28 Aligned_cols=127 Identities=12% Similarity=0.066 Sum_probs=85.7
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcCchHHH
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP--MKPDAVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~~a 428 (614)
...|++..|-+-+....+.+.-.|+.... ....+...|+++.+...+.... +-....+...++... ...|+.+.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~-~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL-HGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh-hchhhHHHH
Confidence 34566666554444444444555554443 3344677899999999887762 234566778888888 888999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCc
Q 038206 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 481 (614)
....+.|+..+.. ++.....-...--..|-++++...|++...-+-+.+.++
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 9999999988877 555544333334456889999999998876554444443
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.69 E-value=16 Score=21.39 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=17.1
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
.|..+-..+... |++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~-~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQL-GNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHC
Confidence 344455566666 67777777776666554
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.66 E-value=16 Score=21.54 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999988654
No 328
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=62.39 E-value=1.5e+02 Score=28.51 Aligned_cols=63 Identities=17% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 305 TSWNSIILGFALHGRAE---AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
.+...++.+|...+..+ +|.++++.+..+.|-+| ..+..-+..+.+.++.+++.+.+..|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35566677777766543 56666666622222223 33434455666678888888888888764
No 329
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=62.27 E-value=1.5e+02 Score=28.56 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=86.8
Q ss_pred hCCCCchhHHHHHHH-HHHhcCC-HHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHH
Q 038206 164 RGLVSDVYINNSLIH-FYASCGH-LDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSI 241 (614)
Q Consensus 164 ~g~~~~~~~~~~li~-~~~~~g~-~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~l 241 (614)
.|. |+..+++.|.+ -+.+.|- ..-|.++|+..... -..|.+|+.+-+.+.-+.-+++ .+|+..+-...
T Consensus 160 nGt-~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E--k~i~~lis~Lrkg~md~rLmef-------fPpnkrs~E~F 229 (412)
T KOG2297|consen 160 NGT-LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE--KDINDLISSLRKGKMDDRLMEF-------FPPNKRSVEHF 229 (412)
T ss_pred CCC-CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh--ccHHHHHHHHHhcChHhHHHHh-------cCCcchhHHHH
Confidence 353 34444554443 3444443 44567777765321 1345666666554443333332 58888887777
Q ss_pred HHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHH-hcCCC---CCH----HHHHHHHHH
Q 038206 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF-ESMPK---RDL----TSWNSIILG 313 (614)
Q Consensus 242 l~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~-~~m~~---~~~----~~~~~li~~ 313 (614)
-..+...|--+..+-.-.++..- .--..-..|.+-..+...+++..... ++|++ |+. +.|+.++++
T Consensus 230 ak~Ft~agL~elvey~~~q~~~~------a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsa 303 (412)
T KOG2297|consen 230 AKYFTDAGLKELVEYHRNQQSEG------ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSA 303 (412)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHH
Confidence 77776666444333221111110 00011222333333333444443332 33432 222 478888876
Q ss_pred HHhcCCH-HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 038206 314 FALHGRA-EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362 (614)
Q Consensus 314 ~~~~g~~-~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 362 (614)
--=+.+- --|.+.++.+ .+|..|+.+++..|+.+...-+
T Consensus 304 veWnKkeelva~qalrhl----------K~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 304 VEWNKKEELVAEQALRHL----------KQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HhhchHHHHHHHHHHHHH----------HhhhHHHHHHhcCChHHHHHHH
Confidence 5433222 2344445444 4688899999999998876543
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.42 E-value=37 Score=23.09 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCc
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 522 (614)
.+.-++.+.|++++|.+..+.+.+. .|...++.++-..+.++|.+.|+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567889999999999999988752 34445666666667778887774
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.85 E-value=2.7e+02 Score=30.52 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=29.7
Q ss_pred HhcCCHHHHHHHHHHHhhhc-CCCcc-----HHHHHHHHHH--HhccCCHHHHHHHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEE-SFSPN-----SITFVGVLSA--CNHRGMVSEGRDYFD 364 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~-g~~p~-----~~t~~~ll~a--~~~~g~~~~a~~~~~ 364 (614)
+-.+++..|...+..| ... .-.|+ ...+...+.| +-..|+++.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFM-RQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHH-HHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3467888888888888 432 11222 2333334443 234688999999887
No 332
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.86 E-value=2.8e+02 Score=30.41 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhcCC-------hhHHHHHHHHhhhc
Q 038206 175 SLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAFVQFGE-------FDSALKLFRRMQIL 230 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 230 (614)
++|-.+.|||++++|.++..+. .++....+-..+..|+.+.+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4677788899999998888333 23344566677777766533 23444555555444
No 333
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=58.30 E-value=2e+02 Score=28.59 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc--cCC---ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCC--ccccH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL--FEP---DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV--TDVLV 275 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p---d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~ 275 (614)
+|-.+..++-+.-++.+++.+-..-... ..| -.....++-.+....+.++.+.+.|+...+.....-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555555555544433222 122 1123344666777777888888877777765222222 24668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc-------CCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhh---cCCCcc
Q 038206 276 NNSLIDMYCKCGSLDIARQVFES-------MPKRDLT------SWNSIILGFALHGRAEAALKYFDRLVVE---ESFSPN 339 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~-------m~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~p~ 339 (614)
+-+|-..|.+..++++|.-+..+ ..-.|.. +.-.|.-++...|....|.+.-++.++. .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88999999999998887544433 2223332 2233455677788888888777765232 232222
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 038206 340 S-ITFVGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 340 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
. .....+.+.|...|+.+.++.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 334455667778889888887777653
No 334
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.20 E-value=1.6e+02 Score=27.38 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=32.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 418 (614)
++.++...|+.+.|..++..+. ....+......++.. ..++.+.||..+-+..+-.-....|..++..|
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 4444444566666666655441 111122222233333 44566666666665543211234555566555
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.83 E-value=59 Score=29.70 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
.+..++.+.+.+...+|+...++- .+ -+|.. -+-..++..++-.|++++|..-++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~q-Vk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQ-VK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHH-Hh--cCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344566667777777777777654 22 23333 33445666777777777777666655
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.56 E-value=27 Score=20.20 Aligned_cols=22 Identities=14% Similarity=-0.034 Sum_probs=12.6
Q ss_pred HhcCchHHHHHHHHHHHHhcCC
Q 038206 420 KKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+.|+.++|.+.|+++++..|+
T Consensus 11 ~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHccCHHHHHHHHHHHHHHCcC
Confidence 4455666666666666555543
No 337
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.96 E-value=2.6e+02 Score=29.09 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCchHHHHHHHHHHHcCCCCCCc--c-----hHHHHHH-HHHccCCcHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHh
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDK--H-----TFPFALK-ACAYLFAFSQGKQAHAHIFKRGLVSDV--YINNSLIHFYAS 182 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~--~-----t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~ 182 (614)
|++.+|++-...|.+--...|.. . ....++. -|...+.++.|..-|....+.--..|. +.-..+.-.|.+
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~ 416 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR 416 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Confidence 89999999998887643222441 1 1223333 345678889998888777664433333 334456677999
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHH--------HHHH--HhcCChhHHHHHHHHhhhc
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVM--------IDAF--VQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~l--------i~~~--~~~g~~~~A~~~~~~m~~~ 230 (614)
.|+.+.-.++++.+..++..++.+- +.|+ ...+++.||...+++-.+.
T Consensus 417 ~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 417 IGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred hccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 9999999999999877665544321 1221 2468888998888876653
No 338
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.94 E-value=99 Score=24.34 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
.++|.-|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555443311 222222333456678999999999998888899988887654 556666666666666554
Q ss_pred cCCChhhH
Q 038206 231 FEPDGYTF 238 (614)
Q Consensus 231 ~~pd~~t~ 238 (614)
-.|...+|
T Consensus 98 g~p~lq~F 105 (115)
T TIGR02508 98 GDPRLQTF 105 (115)
T ss_pred CCHHHHHH
Confidence 44444444
No 339
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.82 E-value=49 Score=29.77 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=11.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
|+...|..++..+...|+.++|.+...+
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444444444433333
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.61 E-value=82 Score=26.36 Aligned_cols=49 Identities=4% Similarity=-0.046 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHH-hcCCCCchhH-HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 423 ASVVLSEEVAKQVIE-SEGGICSGVY-VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~-~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.++.+++.+++.+.+ ..|. ...-| -.|.-++.+.++++.+.++.+.+.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~-~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPE-RRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcc-cchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 445556666666665 2222 22222 2344456666666666666655543
No 341
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=55.49 E-value=2.7e+02 Score=29.15 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
.+..+.-+.|+.++|++.|++|+++....-+......|+.++...+.+.++..++...
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444555667777777777777333221112234455667777777777777776665
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.23 E-value=19 Score=23.38 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46789999999999999999887544
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.75 E-value=1.4e+02 Score=25.44 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 038206 339 NSITFVGVLSACNHRGM-VSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388 (614)
Q Consensus 339 ~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (614)
+..+|.+++.+.++... ---+..+|..+.+ .+.+++...|..||....+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Confidence 33455555555554444 3344555555543 3555555556666555544
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=52.03 E-value=41 Score=32.75 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=31.3
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHccCCcHHHHHHHH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHA 159 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (614)
.|.++ |.+++|++.|..-.... | |.+++..-..+|.+...+..|+.=-.
T Consensus 106 ~yFKQ-gKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQ-GKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhc-cchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 45666 77777777777666554 5 66777666667766666665544333
No 345
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.99 E-value=20 Score=29.79 Aligned_cols=30 Identities=37% Similarity=0.677 Sum_probs=24.8
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
|.-..|..+|+.|+..|.+ ||. |+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~p-Pdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNP-PDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCC-Ccc--HHHHHHHh
Confidence 6667899999999999977 774 78887765
No 346
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.77 E-value=2.1e+02 Score=26.61 Aligned_cols=148 Identities=11% Similarity=0.191 Sum_probs=88.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHH
Q 038206 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~ 358 (614)
.+..|++.-++.-|-..++++.+|=- +-.+ +--|.+..+.+--.++.+-. +.+++.-+.....+++ +...|+..+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQ-SRCA-iLRysklsd~qiL~Rl~~v~-k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQ-SRCA-ILRYSKLSDQQILKRLLEVA-KAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHH-hhhH-hhhhcccCHHHHHHHHHHHH-HHhCCCCCcchHHHhh--hhccchHHH
Confidence 35566776777777666666665511 1111 22234444443334444444 5666666666665555 466788888
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 038206 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 359 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 438 (614)
|...++.-...+|.. .+..+|+-.. .|.......++..| .. +++++|.+++.++.+.
T Consensus 211 alNnLQst~~g~g~V--------------------n~enVfKv~d-~PhP~~v~~ml~~~-~~-~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLV--------------------NQENVFKVCD-EPHPLLVKKMLQAC-LK-RNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHhcccccc--------------------chhhhhhccC-CCChHHHHHHHHHH-Hh-ccHHHHHHHHHHHHHc
Confidence 887777665432221 1233444433 68888888888887 54 4899999999999999
Q ss_pred cCCCCchhHHHHHHHHh
Q 038206 439 EGGICSGVYVLLSRVYA 455 (614)
Q Consensus 439 ~~~~~~~~~~~l~~~~~ 455 (614)
|..| ....+.+.+++-
T Consensus 268 gysp-~Dii~~~FRv~K 283 (333)
T KOG0991|consen 268 GYSP-EDIITTLFRVVK 283 (333)
T ss_pred CCCH-HHHHHHHHHHHH
Confidence 9884 333444444443
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.53 E-value=43 Score=24.92 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=8.4
Q ss_pred HHHHHHHHHhccCCHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~ 360 (614)
++..++.+++..|++++.+
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.47 E-value=96 Score=28.41 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=41.7
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC------CCCHHHHHHHHHHH
Q 038206 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP------KRDLTSWNSIILGF 314 (614)
Q Consensus 241 ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~ 314 (614)
.++...+.+.+.++......-++. -+.|...-..|++.|+-.|++++|..-++-.. .+....|..+|.+-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 334444445555555554444442 34455666778888888888888877666443 12455777777653
No 349
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=50.22 E-value=40 Score=32.85 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=69.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCc
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~ 424 (614)
+-|.+.|.+++|++.|..-+ .+.| +.+++..-..+|.+..++..|+.=.... .. +.-...|..=..+- ...|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR-~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR-ESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH-HHHhh
Confidence 35788999999999988764 4556 7888888888899988888776544332 11 01122333333333 44578
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
..+|.+-++.++++.|. +. -|-..|++.....++.
T Consensus 181 ~~EAKkD~E~vL~LEP~-~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK-NI----ELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcc-cH----HHHHHHHHhcchHhhh
Confidence 88888888888888888 32 2333444444444443
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.79 E-value=1.2e+02 Score=31.93 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--Ch---hHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 174 NSLIHFYASCGHLDLANKVFDNMLER--SL---VSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~f~~m~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+.+.+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45777899999999999999988311 12 23445556666665556666666666665
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.09 E-value=2.2e+02 Score=27.25 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHh-hhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH-
Q 038206 311 ILGFALHGRAEAALKYFDRLV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR- 388 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~-~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 388 (614)
|.+++..|++.+++...-+-. .-+.++|...-.-.+ .|++.+.+..+.++-..-.+. .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 677788888887765543321 123355554444433 378888888888887777653 222234457777777765
Q ss_pred ----cCCHHHHHHHHHh
Q 038206 389 ----AGNIDEALHLVSN 401 (614)
Q Consensus 389 ----~g~~~~A~~~~~~ 401 (614)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6899999988843
No 352
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.07 E-value=1.1e+02 Score=25.16 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 322 ~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
+..+-++.. ....+.|+....-..|.||.+.+++..|..+|+.++. ...+....|-.+++ +-.-+.++
T Consensus 67 EvrkglN~l-~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~---------elkpvl~E 134 (149)
T KOG4077|consen 67 EVRKGLNNL-FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK---------ELKPVLNE 134 (149)
T ss_pred HHHHHHHhh-hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH---------HHHHHHHH
Confidence 444555555 5667889999999999999999999999999998854 44444445655543 34455565
Q ss_pred CCC
Q 038206 402 MPM 404 (614)
Q Consensus 402 m~~ 404 (614)
+++
T Consensus 135 LGI 137 (149)
T KOG4077|consen 135 LGI 137 (149)
T ss_pred hCC
Confidence 553
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.67 E-value=1.3e+02 Score=23.67 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 345 (614)
+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+| ...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl-a~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL-AASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH-HhCC-CHHHHHHHH
Confidence 4556778999999999999999999999887654 567777777777777 4444 555555543
No 354
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=48.61 E-value=3.3e+02 Score=28.15 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=121.3
Q ss_pred HHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhc--------CCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 155 KQAHAHIFKRGLVSDVY-INNSLIHFYASCGHLDLANKVFDNM--------LERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 155 ~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
.+++..-...-+.|+.. +...|+.-+.+ +.+++..+-+.+ .+.=+.++..++...++.++..+|-+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444334444555532 34445555544 455555554443 22234578888888999999888888776
Q ss_pred HhhhccCCChhhHHHH-------HHHHH-hh---CchhHHHHHHHHHHHhccCCCCccccHHHHHH---HHHHhcCC-HH
Q 038206 226 RMQILFEPDGYTFQSI-------TSACA-GL---ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI---DMYCKCGS-LD 290 (614)
Q Consensus 226 ~m~~~~~pd~~t~~~l-------l~a~~-~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li---~~y~~~g~-~~ 290 (614)
-+.. ..|+...-.-+ -+..+ .- .++..-..+++.+... .+.. .....-|+ .-+-+.|. -+
T Consensus 323 lL~~-ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~---DiDr-qQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 323 LLKI-LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY---DIDR-QQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHh-cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cccH-HHHHHHHHHHHHHHHhcCCccH
Confidence 5543 33433211111 11111 00 0111111222222221 1111 11111122 22334454 66
Q ss_pred HHHHHHhcCC---CCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHhhhcCCCccHHH----HHHHHHH--HhccC
Q 038206 291 IARQVFESMP---KRDLTSWNSII----LGFALH---GRAEAALKYFDRLVVEESFSPNSIT----FVGVLSA--CNHRG 354 (614)
Q Consensus 291 ~A~~~~~~m~---~~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~~g~~p~~~t----~~~ll~a--~~~~g 354 (614)
+|.++++.+. .-|..+-|... ..|.+. ....+-+.+-+-+ .+.|+.|-.+. -+.|-+| +...|
T Consensus 398 kalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 7777777655 23444333322 223221 2233334444444 56676664432 2233332 24567
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 413 (614)
++.++.-+-.-+. .+.|++.+|..+.-.+....++++|..++..+| |+..+|++
T Consensus 477 ey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 477 EYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred cHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 7777765544442 577888888777777777788888888888876 56555554
No 355
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.78 E-value=45 Score=18.96 Aligned_cols=29 Identities=3% Similarity=0.137 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
|+.+.+..+|++++...|. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHH
Confidence 4567788888888877776 6666665543
No 356
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.71 E-value=1.5e+02 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
-|..++.-|...|..++|++++.+.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHH
Confidence 4777888888888888888888877
No 357
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.66 E-value=1.5e+02 Score=24.52 Aligned_cols=43 Identities=7% Similarity=-0.071 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (614)
.+.++|..|...|+..--...|..-...+...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555441222233333444444455555544443
No 358
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.58 E-value=1.1e+02 Score=29.68 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
.++..+-+.+++....+.+..+. .+..-...+..+...|++..|++++.+..+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34555555555555555555552 3344455677777888888888888877643
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.47 E-value=68 Score=30.69 Aligned_cols=58 Identities=5% Similarity=-0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 412 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+..-..| ...|.+.+|.++.++.+..+|- +...+-.|++.++..|+--.+.+-++++.
T Consensus 283 gkva~~y-le~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAY-LEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHH-HHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344455 7788888888888888888887 77788888888888888777766666653
No 360
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=47.17 E-value=2e+02 Score=25.40 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=68.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCc----cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSP----NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLA 387 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 387 (614)
.+...|+.+.|...+.+. .. ..| ....+......+...++.+.+...+..... .... ....+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKA-LE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHH-Hh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHH
Confidence 455566666666666554 22 222 222233333335556666666666666643 2222 3455666666666
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 388 RAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..++++.|...+... ...|+ ...+..+...+ ...+..+.+...+.+..+..+.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLL-LELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH-HHcCCHHHHHHHHHHHHHhCcc
Confidence 677777777766665 33343 44555555555 3555677777777777766554
No 361
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.46 E-value=5.4e+02 Score=29.81 Aligned_cols=256 Identities=12% Similarity=-0.037 Sum_probs=135.2
Q ss_pred CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhcCCCChhHHHHHHHHH
Q 038206 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL-DLANKVFDNMLERSLVSWNVMIDAF 211 (614)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~m~~~~~~~~~~li~~~ 211 (614)
+|...-...+..+...+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+..+|...--..+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 66666667777777766543 3333334432 44555555555555554321 1112222333345555555555555
Q ss_pred HhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHH
Q 038206 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 291 (614)
...+..+ ...+.. .. -.+|...-...+.++...+..+. + ... --.++..+-.....++...+..+.
T Consensus 709 ~~~~~~~-~~~l~~-~L--~D~d~~VR~~Av~aL~~~~~~~~---l----~~~---l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 709 RALRAGD-AALFAA-AL--GDPDHRVRIEAVRALVSVDDVES---V----AGA---ATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HhhccCC-HHHHHH-Hh--cCCCHHHHHHHHHHHhcccCcHH---H----HHH---hcCCCHHHHHHHHHHHHHhccccc
Confidence 5443222 222222 22 24566555666666666554322 1 121 234566666677777777665432
Q ss_pred -H-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 292 -A-RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 292 -A-~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
+ ..+..-+..+|...-.+.+.++.+.|....+...+..+ .. .+|...=...+.++...+.. ++...+..+.+
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a-L~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~- 848 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA-LR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT- 848 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH-hc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc-
Confidence 2 23334445778878888888888888766554444444 22 34544555566777777653 44455544544
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038206 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 415 (614)
.|+..+-..-+.++++.+.-..+...+...-..+|..+-....
T Consensus 849 ---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 849 ---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred ---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3666666677777777533344555554442245554433333
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.79 E-value=60 Score=21.05 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=9.0
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 038206 312 LGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m 330 (614)
.+|...|+.+.|.+++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHcCChHHHHHHHHHH
Confidence 3444444444444444444
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.77 E-value=73 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHL 398 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 398 (614)
+...-++|+..+....++..-.|+ -.+...|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777664333333 23567788888888888877665
No 364
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.92 E-value=3.1e+02 Score=29.06 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m 330 (614)
.++.-|.+.+++++|+.++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4555666666666666666665
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.72 E-value=1.5e+02 Score=22.72 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHH
Q 038206 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 220 (614)
.++++.+.+.|+- +......+-..-...|+.+.|.++++.++ +..-.|..+++++-..|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 11122222222224466777777777777 6666777777777666654433
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.31 E-value=2.8e+02 Score=26.65 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=72.9
Q ss_pred HHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-------hHHHHHHHHHccCCcHHHHHHHHH----HHHhCCCCchhHHH
Q 038206 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDKH-------TFPFALKACAYLFAFSQGKQAHAH----IFKRGLVSDVYINN 174 (614)
Q Consensus 106 ~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~ 174 (614)
+..++. +++++|+..|.+....|+. .|.. +..-+.+.+...|+...-.+.... |....-+....+..
T Consensus 11 ~~~v~~-~~~~~ai~~yk~iL~kg~s-~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 11 NNAVKS-NDIEKAIGEYKRILGKGVS-KDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHhhhh-hhHHHHHHHHHHHhcCCCC-hhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344555 7888888888888888765 4443 444566667777766554433322 22222223344566
Q ss_pred HHHHHHHhc-CCHHHHHHHHhhcCCC-----C----hhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 175 SLIHFYASC-GHLDLANKVFDNMLER-----S----LVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 175 ~li~~~~~~-g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+|+..+... ..++.-.++.....+- - ...=.-+|..+.+.|.+.+|+.+.+.....
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666543 3355555555544221 1 112235788999999999999988776544
No 367
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.16 E-value=1.2e+02 Score=32.53 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHH------HHHHHHhhc-CCCChhHHHHHHHH
Q 038206 140 FALKACAYLFAFSQGKQAHAHIFKRG--LVSDVYINNSLIHFYASCGHLD------LANKVFDNM-LERSLVSWNVMIDA 210 (614)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~f~~m-~~~~~~~~~~li~~ 210 (614)
+++.+|...|++..+.++++.+.... -+.-...+|..|+-..+.|.++ .|.+.+++. ..-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67777777777777777777666532 1222344566666666666543 333333332 23355555555554
Q ss_pred HH
Q 038206 211 FV 212 (614)
Q Consensus 211 ~~ 212 (614)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=42.92 E-value=51 Score=17.91 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=7.8
Q ss_pred HhcCchHHHHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~ 437 (614)
...++++.|...+++.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 12 LKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHhhHHHHHHHHHHHHc
Confidence 334444444444444443
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.74 E-value=2.3e+02 Score=27.10 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=41.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
=|.+++..|+|.+++...-+--+. ++|...-.. |-.|++.+......++-..-.+..++. +..-|.++...|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq---~lp~y~~vaELy 163 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQ---SLPEYGTVAELY 163 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccC---CchhhHHHHHHH
Confidence 367788888888887765544333 333322222 222345555555554444444431111 122245544444
Q ss_pred Hh-----cCCHHHHHHHH
Q 038206 284 CK-----CGSLDIARQVF 296 (614)
Q Consensus 284 ~~-----~g~~~~A~~~~ 296 (614)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 33 35555555554
No 370
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.23 E-value=1.5e+02 Score=31.97 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m 330 (614)
+|+.+|..+|++-.+.++++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~ 54 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSF 54 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 4444555555555554444443
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.08 E-value=3.1e+02 Score=26.03 Aligned_cols=179 Identities=8% Similarity=0.080 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHHHhc--CChhHHHHHHhcCCC--CC-----hhhHHHHHHHHHcCCCCchHHHHHHHHHHHc---CCC
Q 038206 64 QHKTLLIYSRIIHFASF--ADLDYAFRVFYQIEN--PN-----SFTWNTLIRACARSVDAKPQAIVLFQRMIEQ---GNV 131 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~--g~~~~A~~~f~~m~~--~~-----~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~---~~~ 131 (614)
|| + .+-|.--+.-+- ..+++|+.-|.+..+ +. -.+...+|....+. +++++.++.|.+|..- .+.
T Consensus 24 pd-V-DlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 24 PD-V-DLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CC-c-chHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHh
Confidence 45 4 455543333222 567788877776643 22 23345577888888 8899988888887531 111
Q ss_pred -CCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------
Q 038206 132 -LPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR----G-LVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------ 199 (614)
Q Consensus 132 -~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------ 199 (614)
.-+..+.++++...+...+.+.-...++.-++. . -..--.+-+.|-..|...|.+..-.+++.++.+.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 034556778887777777766666665543321 0 0111123355667777777777777777776221
Q ss_pred --C-------hhHHHHHHHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHH
Q 038206 200 --S-------LVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACA 246 (614)
Q Consensus 200 --~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~ 246 (614)
| ...|..=|..|....+-.+-..+|++.... ..|.+. .-.+|+-|+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECG 237 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECG 237 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcC
Confidence 1 235666677777777766666677766543 333333 234455553
No 372
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.72 E-value=50 Score=31.77 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=34.4
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 303 DLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 303 ~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
|.. -|+.-|..-.+.||+++|++++++. ++.|+.--..||...+
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEA-e~LG~~~Ar~tFik~V 299 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEA-ERLGSTSARSTFISSV 299 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCchHHHHHHHHh
Confidence 443 4678888889999999999999999 8888877667765544
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.77 E-value=1.3e+02 Score=24.77 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038206 118 AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163 (614)
Q Consensus 118 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (614)
..+-++.+..-++. |+.......|++|.+.+|+..|.++++-++.
T Consensus 68 vrkglN~l~~yDlV-P~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLV-PSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccC-CChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33445555566667 8888888888888888888888888877654
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.37 E-value=9.1e+02 Score=30.94 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHHHhc-CChhHHHHHHh-cCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCC
Q 038206 74 IIHFASF-ADLDYAFRVFY-QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFA 150 (614)
Q Consensus 74 li~~~~~-g~~~~A~~~f~-~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~ 150 (614)
|...|+. ++++...-+.. +...|+. ++ -|--.... |++..|...|+.+.+.+ |+ ..+++.+++.....+.
T Consensus 1426 lq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~-qil~~e~~-g~~~da~~Cye~~~q~~---p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1426 LQNLYGSIHDPDGVEGVSARRFADPSL--YQ-QILEHEAS-GNWADAAACYERLIQKD---PDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHhcCCcchhhhHHHHhhcCccH--HH-HHHHHHhh-ccHHHHHHHHHHhhcCC---CccccchhhHHHhhhcccc
Confidence 3335655 55555555544 2232332 22 23334444 77788888888887766 44 6677777776666666
Q ss_pred cHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 038206 151 FSQGKQAHAHIFKRGLVSDVYIN-NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 207 (614)
++...-..+..... ..+....+ +.=+.+-.+.++++....... .++..+|.+.
T Consensus 1499 l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 66555433333222 12222222 222333456666666666554 4555666655
No 375
>PRK10941 hypothetical protein; Provisional
Probab=40.06 E-value=1.6e+02 Score=28.22 Aligned_cols=60 Identities=8% Similarity=-0.060 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+.+-.++ .+.++++.|+++.+.++...|+ ++.-+.--.-+|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~-~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAAL-MEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHH-HHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34455566 8889999999999999999998 777777777788999999999887776654
No 376
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.06 E-value=2.4e+02 Score=30.95 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK-RDLT----------SWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNSIT 342 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~~t 342 (614)
+...++-.|....+++...++.+.++. ||.. .|.--+.--.+-|+-++|+...-.|.+.+| +.||.+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 444455556666666666666655542 2211 122222222234666777776666634444 6677643
Q ss_pred H-----HH--HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH------------------------HHcCC
Q 038206 343 F-----VG--VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL------------------------ARAGN 391 (614)
Q Consensus 343 ~-----~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~------------------------~~~g~ 391 (614)
. .- +-+.|...+..+.|.++|+.. +.+.|+...--.+...+ ++.|.
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 2 21 112345566677777777766 35666544332232223 33333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 392 IDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 392 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
++.-.++| |+.+ .+.+- .-..++.+|.+..+.|.++.|.
T Consensus 360 leklq~YW-------dV~~---y~~as-VLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 360 LEKLQEYW-------DVAT---YFEAS-VLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHH-------hHHH---hhhhh-hhccCHHHHHHHHHHHhccCCc
Confidence 33333322 2222 23333 4456788888888888887765
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.71 E-value=1.5e+02 Score=22.68 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A 118 (614)
..+++.+.+.|+- .+ ...+.+-..-.+ |+.+.|+++++.++ +..-.++.+++++-.. |.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~---~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT-~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TE---EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRET-EHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CH---HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHc-Cchhhh
Confidence 5666777777754 22 233333333234 77788888888777 6666777777777766 654443
No 378
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.57 E-value=2e+02 Score=23.06 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999876
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=38.67 E-value=2.8e+02 Score=24.62 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCcc
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 477 (614)
+++|...|+++.+.+|. ...|..-+.+.. +|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~--ne~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPN--NELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCC--cHHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 56666667777777666 667766655553 4777777777776643
No 380
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=38.44 E-value=7.2e+02 Score=29.23 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
.|.-.++.--+.|.+.+|..++.-=.+.--..|.+....+.+.+.+++|--.|+.. -. ..-.+.+|...|
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~-Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERC-GK---------LEKALKAYKECG 979 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh-cc---------HHHHHHHHHHhc
Confidence 44455555566677777777664333333344555555566678888888777644 11 223577888899
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 406 (614)
++.++..+...+.. +-.--..+-..|+.-+...++.-+|-++..+..-.|
T Consensus 980 dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 980 DWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred cHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 99999998887742 222223344678888888999888888887774333
No 381
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.33 E-value=3.7e+02 Score=25.87 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=70.1
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH
Q 038206 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKPDA 408 (614)
Q Consensus 336 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~ 408 (614)
++.|..-++.++.- +..++++--+-.++..++.|-.-....+..+.+-|++.++.+.+.+...+. +.+-|+
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 44555556665531 111222222222333333344445566777888888888888888777653 445555
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh-HHHHHHH-HhhcCChhhHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV-YVLLSRV-YASARRWNDVGLVRKLM 470 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~-~~~~g~~~~a~~~~~~m 470 (614)
..-.+=+.-......-+++-++..+.+.+.|.+.+... |-..-.+ +....++.+|..++-..
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44333332221334446777788888888887654321 2221111 22334666776666543
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.36 E-value=3.7e+02 Score=25.58 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~ 351 (614)
|+.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|... .+|...-.+++. |.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~---------------e~dlfi~RaVL~-yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS---------------EADLFIARAVLQ-YL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc---------------chhHHHHHHHHH-HH
Confidence 56777888889999999999988875544443333322332222222222 223333333443 55
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 038206 352 HRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~ 369 (614)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877776653
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.33 E-value=6.1e+02 Score=28.03 Aligned_cols=401 Identities=10% Similarity=-0.051 Sum_probs=183.5
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHc
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~ 128 (614)
.++-+.+.+..-.|.. . .+-..-+..+.+ +++....+.+..- ..+...-.....+.... |+.++|....+.+-..
T Consensus 83 ~ev~~Fl~~~~~~P~~-~-~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~-G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 83 VQVTNFIRANPTLPPA-R-SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWAT-GQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHHCCCCchH-H-HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Confidence 4555555554322122 2 344444444555 6777777633222 23444445566677777 8887888877777776
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHH--HHHHHHHHhCC-----------CCc-hhHHHHHHHHHHhcCCHHHHHHHHh
Q 038206 129 GNVLPDKHTFPFALKACAYLFAFSQGK--QAHAHIFKRGL-----------VSD-VYINNSLIHFYASCGHLDLANKVFD 194 (614)
Q Consensus 129 ~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~-----------~~~-~~~~~~li~~~~~~g~~~~A~~~f~ 194 (614)
|.. .......+++.+.+.|.+.... +=+..+...|- .++ ......++..+. +...+..++.
T Consensus 159 g~~--~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~ 233 (644)
T PRK11619 159 GKS--LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFAR 233 (644)
T ss_pred CCC--CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhh
Confidence 633 4556777777777655544322 11122222221 111 011112222221 1222222222
Q ss_pred hcCCCChhHHHHHHHHHH--hcCChhHHHHHHHHhhhc--cCCChh--hHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 195 NMLERSLVSWNVMIDAFV--QFGEFDSALKLFRRMQIL--FEPDGY--TFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 195 ~m~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~--~~pd~~--t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
... ++...-..++.++. ...+.+.|..++...... ..+... ....+.......+....+...+.....
T Consensus 234 ~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~----- 307 (644)
T PRK11619 234 TTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM----- 307 (644)
T ss_pred ccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-----
Confidence 211 11111111111111 234457777777766443 222211 111121111111112223222222211
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLTSW-NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 345 (614)
...+..+...-+....+.++++.+...+..|++ .+..-| -=+..++...|+.++|...|+.. .. . .+|-.
T Consensus 308 ~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~-a~---~---~~fYG 380 (644)
T PRK11619 308 RSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL-MQ---Q---RGFYP 380 (644)
T ss_pred ccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hc---C---CCcHH
Confidence 112334444555555677788777777777762 121122 22345555578888888887765 22 1 12333
Q ss_pred HHHHHhccCCHHHH-HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCc
Q 038206 346 VLSACNHRGMVSEG-RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 346 ll~a~~~~g~~~~a-~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 424 (614)
++.+ .+.|..-.- ......-.....-.| --.-+..+...|...+|...+..+-...+......+.... ...|.
T Consensus 381 ~LAa-~~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A-~~~g~ 454 (644)
T PRK11619 381 MVAA-QRLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYA-FNQQW 454 (644)
T ss_pred HHHH-HHcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCC
Confidence 3321 111111000 000000000000011 1123456667789999988887763234544444444444 67788
Q ss_pred hHHHHHHHHHHHHhc---CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCC
Q 038206 425 VVLSEEVAKQVIESE---GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 479 (614)
.+.+..........+ .. -+..|...+..+++.-.++.+.-.---..+.++.|..
T Consensus 455 ~~~ai~~~~~~~~~~~~~~r-fp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 455 WDLSVQATIAGKLWDHLEER-FPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHhhchhHHHHHHh-CCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 888887775543211 01 1234666777777766677665433333466676643
No 384
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.83 E-value=2.2e+02 Score=27.86 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 364 (614)
..+-.+.|+..+|.+.|+.++++..+..-...-..++.+|.....+.....++.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777777777663322111111222345556655554444444443
No 385
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.82 E-value=1e+02 Score=20.35 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=17.2
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
+.|-+.++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555566666666666555555555444
No 386
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.48 E-value=5.2e+02 Score=27.01 Aligned_cols=372 Identities=12% Similarity=0.047 Sum_probs=179.5
Q ss_pred ChhHHHHHHhcCCCC-Ch--hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCC--CcchHHHHHHHHHccCCcHHHHH
Q 038206 82 DLDYAFRVFYQIENP-NS--FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP--DKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 82 ~~~~A~~~f~~m~~~-~~--~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
.++.|..+.+.|+.- |+ .+++.+-..|......+..+..++++.++.....| .-....-++....-..|+..|.+
T Consensus 69 HLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~e 148 (629)
T KOG2300|consen 69 HLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALE 148 (629)
T ss_pred HHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHH
Confidence 445555555555542 21 24455555666552366777777777766431102 11122234444555667777766
Q ss_pred HHHHHHHhCCC---CchhHHHHHHHHH------HhcCC---HHHHHHHHhhcCC---CCh--------hHHHHHHHHHHh
Q 038206 157 AHAHIFKRGLV---SDVYINNSLIHFY------ASCGH---LDLANKVFDNMLE---RSL--------VSWNVMIDAFVQ 213 (614)
Q Consensus 157 ~~~~~~~~g~~---~~~~~~~~li~~~------~~~g~---~~~A~~~f~~m~~---~~~--------~~~~~li~~~~~ 213 (614)
++ ..|.. +-...|..++... .-..+ ++.+...-++|.+ +|. +-.+.-+.-|.-
T Consensus 149 lL----avga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~ 224 (629)
T KOG2300|consen 149 LL----AVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLL 224 (629)
T ss_pred HH----hccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 53 23321 1112222222111 11123 3333333333322 121 122334556677
Q ss_pred cCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc--CC
Q 038206 214 FGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC--GS 288 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~ 288 (614)
.|+...+...+++++.. +.|....+..-+ ..........++-..-+- -+.--..+..++..+|.+. +-
T Consensus 225 ~gq~rt~k~~lkQLQ~siqtist~~~~h~e~i---lgsps~~l~~wlpkeqic----aLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 225 PGQVRTVKPALKQLQDSIQTISTSSRGHDEKI---LGSPSPILFEWLPKEQIC----ALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred ccchhhhHHHHHHHHHHHhccCCCCCCccccc---cCCCChHHHhhccHhhhH----hhhhhhHHhhhhhhHHHHHHHHH
Confidence 78888888887777655 222110000000 011111111111110000 0000111222233344331 22
Q ss_pred HHHHHHHHhcCCCCC--HHH--------HHHHHHHHHhcCCHHHHHHHHHHHhhhc-CCCcc--H-----HHHHHHHHH-
Q 038206 289 LDIARQVFESMPKRD--LTS--------WNSIILGFALHGRAEAALKYFDRLVVEE-SFSPN--S-----ITFVGVLSA- 349 (614)
Q Consensus 289 ~~~A~~~~~~m~~~~--~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~p~--~-----~t~~~ll~a- 349 (614)
.|+|....++.++.| ... ...++.+-.-.|+..+|++-...| ..- .-.|. . .....++.-
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm-~~w~~r~p~~~Llr~~~~~ih~LlGly 376 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDM-KNWCTRFPTPLLLRAHEAQIHMLLGLY 376 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHhCCchHHHHHhHHHHHHHHhhH
Confidence 455665556666544 222 222333334579999999999888 442 22333 1 112234443
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH--------HHHHH-
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS--------LLDAC- 418 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--------ll~~~- 418 (614)
|...+.++.|...|....+. --.-| ...-..+.-.|.+.|+-+.-.++.+.++ .||..++.+ ++.|+
T Consensus 377 s~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHH
Confidence 35568899998888777653 22222 2233456678889999998888888885 232222211 11121
Q ss_pred HHhcCchHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 419 CKKHASVVLSEEVAKQVIESEGG-----ICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
....+++.+|...+.+.++..-. ...-..+.|.......|+..++.+..
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 13557899999999988775411 11233456667777788887776554
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.40 E-value=1.4e+02 Score=26.83 Aligned_cols=38 Identities=8% Similarity=-0.019 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 403 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|+..+|..++.++ ...|+.++|.+..+++...-|.
T Consensus 139 ~~~P~~~~~~~~a~~l-~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALAL-ALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCc
Confidence 3468888888888888 8889999999999888888774
No 388
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.77 E-value=4.1e+02 Score=28.81 Aligned_cols=93 Identities=9% Similarity=0.091 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (614)
+...|..-+..+...++.. ....+..... ...+.....-++..|.+.|-.+.+..+.+.+-.. -+ ...-|..
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---~~--~~~~~g~ 443 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR---LL--KEGRYGE 443 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---HH--HHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HH--HCCCHHH
Confidence 4445766666665544333 5566666666 4445666777888899999888888888776654 22 2234666
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 038206 279 LIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m 299 (614)
-+..+.++|+......+-+.+
T Consensus 444 AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 444 ALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHH---------------
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 777888888887766555443
No 389
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.63 E-value=4.2e+02 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
+.....|.++|.+.+|.++-+.... -+...|-.++..++..|+--.|.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556666777776666665542 24455666666666666655555555444
No 390
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.29 E-value=3.4e+02 Score=24.52 Aligned_cols=23 Identities=0% Similarity=-0.068 Sum_probs=11.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHh
Q 038206 450 LSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 450 l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
-.+++...|+-++|+.-+++..+
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHH
Confidence 34455555555555555554444
No 391
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.25 E-value=4.4e+02 Score=25.76 Aligned_cols=80 Identities=5% Similarity=-0.064 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 151 FSQGKQAHAHIFKRGL----VSDVYINNSLIHFYASCGHLDLANKVFDNMLE-RSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
.+.+.+.+......+. ..++.....++....+.|+.+.-..+++.... ++..-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455666666655311 33444555555566666665554444444432 344455666666666666666566666
Q ss_pred Hhhhc
Q 038206 226 RMQIL 230 (614)
Q Consensus 226 ~m~~~ 230 (614)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55544
No 392
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.14 E-value=2.4e+02 Score=22.64 Aligned_cols=78 Identities=9% Similarity=0.054 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666665542 233333333445566777777744444455667777766644 356666666666666643
Q ss_pred c
Q 038206 230 L 230 (614)
Q Consensus 230 ~ 230 (614)
+
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.57 E-value=50 Score=23.29 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+|.||.+.|++++|.++..++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555544444
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.29 E-value=1e+02 Score=20.91 Aligned_cols=28 Identities=11% Similarity=-0.029 Sum_probs=20.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCch
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
-|+ .+.|+++.|.+..+.+++..|. |..
T Consensus 9 ig~-ykl~~Y~~A~~~~~~lL~~eP~-N~Q 36 (53)
T PF14853_consen 9 IGH-YKLGEYEKARRYCDALLEIEPD-NRQ 36 (53)
T ss_dssp HHH-HHTT-HHHHHHHHHHHHHHTTS--HH
T ss_pred HHH-HHhhhHHHHHHHHHHHHhhCCC-cHH
Confidence 355 7788888888888888888888 544
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.27 E-value=1.2e+02 Score=23.22 Aligned_cols=43 Identities=5% Similarity=-0.028 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..++...+.+|. |...-..+...+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555566666 6666667777777777777777777666554
No 396
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.89 E-value=4.8e+02 Score=25.49 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=93.7
Q ss_pred HHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcC-----CHHHHH--------HHHHHHhhhcCCCcc------HHHHHHH-
Q 038206 289 LDIARQVFESM-P-KRDLTSWNSIILGFALHG-----RAEAAL--------KYFDRLVVEESFSPN------SITFVGV- 346 (614)
Q Consensus 289 ~~~A~~~~~~m-~-~~~~~~~~~li~~~~~~g-----~~~~A~--------~l~~~m~~~~g~~p~------~~t~~~l- 346 (614)
++.+.++...+ . +++...|..++..+.... ..+... +++..+....|..+. .......
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~ 135 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALL 135 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHH
Confidence 55667777766 3 567777776665443211 111111 222322234455554 2223332
Q ss_pred HHHHh-ccCCHHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhc
Q 038206 347 LSACN-HRGMVSEGRDYFDVMINEYNI---TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422 (614)
Q Consensus 347 l~a~~-~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 422 (614)
+...+ ...-.+.+.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+. ...
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aL-a~~ 214 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSAL-ACS 214 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHH-TT-
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhh-hcc
Confidence 33323 223356788888888763111 3355566677777778888776666666655456788888899998 888
Q ss_pred CchHHHHHHHHHHHHhc-CCCCchhHHHHHHHHhhcCCh--hhHHHHHH
Q 038206 423 ASVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRW--NDVGLVRK 468 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 468 (614)
.+.+...++++.+...+ .. ....+..+. .....+.. +.+.+.++
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~-~~d~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVR-SQDIRYVLA-GLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS--TTTHHHHHH-HHH-CSTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccc-cHHHHHHHH-HHhcCChhhHHHHHHHHH
Confidence 89888899999988854 33 333443333 33323333 55555553
No 397
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.65 E-value=4.1e+02 Score=24.66 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=71.9
Q ss_pred CCCccccHHHHHHHHHHh--cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCK--CGSLDIARQVFESMPK-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
++++. +..+++++.- .++++.|.+.+-.-.- |+-. .-++.++...|+.+.|+.+++.+ .-....+ ....
T Consensus 74 ~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~--~~~~ 145 (226)
T PF13934_consen 74 GIPPK---YIKFIQGFWLLDHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAV-GPPLSSP--EALT 145 (226)
T ss_pred CCCHH---HHHHHHHHHHhChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhc-CCCCCCH--HHHH
Confidence 55543 4455666543 4677788777744321 1212 24778888899999999999866 3222222 2222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 409 (614)
.++.+ ...+.+.+|..+-+....+ -....+..++..+.....-....+.+-.+|+.+...
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 23333 4558888988876655321 113456667766664433233344444556655443
No 398
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.62 E-value=4.1e+02 Score=24.62 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=8.8
Q ss_pred HHcCCHHHHHHHHHh
Q 038206 387 ARAGNIDEALHLVSN 401 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~ 401 (614)
.|.|..++|+++.+.
T Consensus 114 iR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 114 IREGKTEEALEFAQT 128 (228)
T ss_pred HHhhhHHHHHHHHHH
Confidence 355666666666654
No 399
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=31.64 E-value=3e+02 Score=22.81 Aligned_cols=110 Identities=9% Similarity=0.166 Sum_probs=60.1
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchH---HHHHHHHHccC-------CcH
Q 038206 83 LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTF---PFALKACAYLF-------AFS 152 (614)
Q Consensus 83 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~---~~ll~~~~~~~-------~~~ 152 (614)
+.-|..++-+....+ .....++.+.+. .-.-.++++..++...... |..+.- +.-++.|-... ...
T Consensus 5 p~IA~~~l~~l~~s~--~~~~yld~lv~~-~~sl~s~EvVn~L~~~~~~-p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 5 PNIAIEILVKLINSP--NFKEYLDVLVSM-DMSLHSMEVVNRLTTSFSL-PQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHcC-CCchhHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 444555554443322 255566666666 6666777777777766644 444321 12223333211 122
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
..-.+...+++.++......+.-+=..+.+-.++.+|..+|+-+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 23345556666776555556666666666777777777777654
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.49 E-value=58 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
--.+|.||.+.|++++|.+..+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578888888888888888887754
No 401
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=31.41 E-value=19 Score=25.60 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=16.9
Q ss_pred ceEEEecCCccccccCCccCC
Q 038206 590 VEIIVRDRARFHHFKDGSCSC 610 (614)
Q Consensus 590 ~~~~~~~~~~~h~~~~g~~~~ 610 (614)
..|-+.|....|+|+|||-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 567889999999999998653
No 402
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.58 E-value=2e+02 Score=21.76 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHH
Q 038206 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 220 (614)
..++..+.+.|+-.. .-.-..-+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346666666663222 12222233445678888888888888888888888888877755433
No 403
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=30.40 E-value=3.2e+02 Score=22.66 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhcCchHHHHHHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWR-SLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~ 433 (614)
-..+-.++..++.-+|..++|.++++..+.-++-...| -++..| +...+-++..++-+
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y-~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAY-AKCKTSEEVIEIQN 123 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 34445566666666677777777766664444433333 355666 55555544444433
No 404
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.39 E-value=94 Score=34.56 Aligned_cols=95 Identities=12% Similarity=0.220 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038206 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (614)
+.++++.+.+.+.- ..-| .++|..+.+.|-++-|+.+.+.=..+ .+....+|+++.|+
T Consensus 606 ~k~ydeVl~lI~ns-~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNS-NLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVAL 663 (1202)
T ss_pred hhhhHHHHHHHHhc-Cccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHH
Confidence 45666666666543 2222 13444455667777666655433221 12345678888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 397 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
+.-.++. |..+|..|.... ...|+.+-|+..|++...
T Consensus 664 e~akkld---d~d~w~rLge~A-l~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 664 EAAKKLD---DKDVWERLGEEA-LRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHhcC---cHHHHHHHHHHH-HHhcchHHHHHHHHHhhh
Confidence 8777665 667788888877 777888888877776654
No 405
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.22 E-value=2.6e+02 Score=21.33 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
++|+.....|+..|+.+|..+++...-+=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666676667777766666665555555555666555
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.07 E-value=76 Score=30.62 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
||..|....+. |++++|+.++++..+.|..
T Consensus 260 y~~aI~~AVk~-gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKK-GDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCc
Confidence 35666666666 6666666666666666644
No 407
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.81 E-value=7.7e+02 Score=26.62 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=75.7
Q ss_pred HHhcCCHHHHHHHHHHHhhh-------cCCCccHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 314 FALHGRAEAALKYFDRLVVE-------ESFSPNSITFVGVLSACNHRG-----MVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
+....+.+.|+..|+.+ .. .| +......+-.+|.+.. +.+.|..++....+ .|. |+....-.
T Consensus 259 ~g~~~d~e~a~~~l~~a-a~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLA-AESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYLLG 332 (552)
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHHHH
Confidence 33455666666666665 33 33 1223333444444422 45667777766643 232 33333222
Q ss_pred HHHHHHH-cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 382 LVDLLAR-AGNIDEALHLVSNMPMK--PDAVIWRSLLDAC-CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 382 li~~~~~-~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
.+...+. ..+...|.++|...-.. ++...+.++.-.. .....+.+.|...+++.-+.+.. ...--...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-
Confidence 2222222 23456777777765222 2333232222211 01234677788888888777732 22222233444444
Q ss_pred CChhhHHHHHHHHHhCCCc
Q 038206 458 RRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 458 g~~~~a~~~~~~m~~~g~~ 476 (614)
++++.+.-....+.+.|..
T Consensus 411 ~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYE 429 (552)
T ss_pred ccccHHHHHHHHHHHhhhh
Confidence 7777777777777666654
No 408
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=28.47 E-value=4.8e+02 Score=24.11 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH--HHccCCcHHHHHHHHHHHHhCCCCch--hHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA--CAYLFAFSQGKQAHAHIFKRGLVSDV--YINN 174 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~ 174 (614)
..||.+---+... |+++.|.+.|+...+.+ |. .-|..+=++ +--.|++..|.+=+...-+.+ +.|+ ..|-
T Consensus 100 ~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELD---p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWL 173 (297)
T COG4785 100 EVFNYLGIYLTQA-GNFDAAYEAFDSVLELD---PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHhc-ccchHHHHHhhhHhccC---Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHH
Confidence 3466665556666 77777777777777655 21 123333222 233466666665555554443 1122 1222
Q ss_pred HHHHHHHhcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-------cCCChhhHHHHHHHHH
Q 038206 175 SLIHFYASCGHLDLANK-VFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-------FEPDGYTFQSITSACA 246 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~pd~~t~~~ll~a~~ 246 (614)
-|+. ..-+..+|.. +.++....|..-|..-|-.|.-..-.++ .++++.... -..=..||--+-+-+.
T Consensus 174 Yl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 174 YLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 1111 1223344433 3333344454555544444332111111 122222211 1111345556666666
Q ss_pred hhCchhHHHHHHHHHHHh
Q 038206 247 GLATLSLGMWAHAYILRH 264 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (614)
..|++++|..+|+..+..
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 777777777777766654
No 409
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.84 E-value=6.7e+02 Score=25.59 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMPK------RDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
..+.-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|........+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 3566788899999999999999988542 12334555555555667777766666655
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.71 E-value=1.9e+02 Score=19.12 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=18.3
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.+.|-..++..++++| +..|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l-~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRL-QQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHH-HHcCcccCHHHHHHHH
Confidence 3455555666666666 6666555555555444
No 411
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.20 E-value=3.8e+02 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=11.6
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 038206 210 AFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+|-+...+++|++-|.++...
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 445555566666666555543
No 412
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.87 E-value=2.1e+02 Score=22.45 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
..-++.++++...+....+.....|.-.|++.|+-+.|.+-|+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444555555555444456666777778888888888777765
No 413
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=26.70 E-value=1e+03 Score=27.51 Aligned_cols=254 Identities=9% Similarity=-0.014 Sum_probs=139.2
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038206 88 RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167 (614)
Q Consensus 88 ~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 167 (614)
.+...+..+|...-...+..+.+. +. +++...+..+... +|...-...+.++...+........+..+++ .
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~-~~-~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~ 695 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTET-TP-PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---S 695 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhh-cc-hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---C
Confidence 334444566766666667777766 54 3455555555533 4444444455555443321111223333333 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~ 247 (614)
+|..+-.+.+..+...+.- ....+...+..+|...-...+.++.+.+..+.. .... ..+|...-.....++..
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l--~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA--TDENREVRIAVAKGLAT 768 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh--cCCCHHHHHHHHHHHHH
Confidence 5666666666666654321 123445556666766666667777665543321 1111 34566666666667666
Q ss_pred hCchhH-HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038206 248 LATLSL-GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA-RQVFESMPKRDLTSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 248 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 325 (614)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+ ..+...+.++|...-..-+.++...+.. ++..
T Consensus 769 ~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~ 841 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG------DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVP 841 (897)
T ss_pred hccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHH
Confidence 665433 2233333332 35677888888888888876554 3344555567766666677777777653 4555
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.+..+ . -.|+...=...+.++.+......+...+....+
T Consensus 842 ~L~~~-L---~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEA-L---TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHH-h---cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55555 2 245655555666777765434456666666654
No 414
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.61 E-value=71 Score=23.80 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHhhCCccCCCCccc
Q 038206 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530 (614)
Q Consensus 502 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~ 530 (614)
...++.+.+++...+++..|+.||-..+-
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~G 34 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLVG 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE-
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 34567777888889999999999965543
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.31 E-value=4.3e+02 Score=27.08 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch---------------hHHHHHHHHHHhcCCH
Q 038206 122 FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV---------------YINNSLIHFYASCGHL 186 (614)
Q Consensus 122 ~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---------------~~~~~li~~~~~~g~~ 186 (614)
...+.+.+ |+......+++.+-..-+-....+.++...+.+-+.+. +..-.|++.++-.||+
T Consensus 62 ~~~l~~~~---~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY 138 (404)
T PF10255_consen 62 IQLLKENN---PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDY 138 (404)
T ss_pred HHHHHhhc---cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCH
Q ss_pred HHHHHHHhhc-----------CCCChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 187 DLANKVFDNM-----------LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 187 ~~A~~~f~~m-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
..|+++++.+ +.-.+.++--+.-+|.-.+++.+|++.|....
T Consensus 139 ~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 139 YQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.25 E-value=7.3e+02 Score=25.55 Aligned_cols=100 Identities=7% Similarity=-0.091 Sum_probs=50.8
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 104 li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
-|.++... | +.+.+.+....... ++...+.....++....+......+.+.+ -.++..+-...++++++.
T Consensus 44 hLdgL~~~-G--~~a~~~L~~aL~~d---~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i 113 (410)
T TIGR02270 44 HVDGLVLA-G--KAATELLVSALAEA---DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWL 113 (410)
T ss_pred HHHHHHHh-h--HhHHHHHHHHHhhC---CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcC
Confidence 36677666 6 45666666665443 33333444333443222222122222222 244555667777777777
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 038206 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213 (614)
Q Consensus 184 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 213 (614)
++.+....+..-+..++...-.+.+.++..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 766666555555555555444444455544
No 417
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.19 E-value=7.3e+02 Score=25.51 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=21.9
Q ss_pred HHHHHHHHHHh---cCChhHHHHHHHHhhhc-cCCChhh
Q 038206 203 SWNVMIDAFVQ---FGEFDSALKLFRRMQIL-FEPDGYT 237 (614)
Q Consensus 203 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~-~~pd~~t 237 (614)
.+..+++++.+ .++.+.|+.++..|... ..|....
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 34455555554 47788888888888765 4444333
No 418
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=7.2e+02 Score=25.20 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=95.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHH-H-Hhhhc-cCCChhhHHHHH
Q 038206 166 LVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF-R-RMQIL-FEPDGYTFQSIT 242 (614)
Q Consensus 166 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~-~-~m~~~-~~pd~~t~~~ll 242 (614)
...+..+...+++.|...++|+.--+.. ....-+.|+...|+... + -|.-. -.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 3445556667777777777766533322 12234566666666522 2 22211 455666655555
Q ss_pred HHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038206 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322 (614)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 322 (614)
.....- -+|+ +|-.+. -...-..|..-+-.+|++++|..++.+.+ +.||.+| ..-++
T Consensus 114 ~tLr~V---tegk-IyvEvE---------RarlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm-------~~~ek 170 (439)
T KOG1498|consen 114 ETLRTV---TEGK-IYVEVE---------RARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSM-------EKSEK 170 (439)
T ss_pred HHHHHh---hcCc-eEEeeh---------HHHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhh-------HHHHH
Confidence 433211 0100 000000 11233456677888999999999988765 4555543 23344
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHH
Q 038206 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-----LEHYGCLVDLLARAGNIDEALH 397 (614)
Q Consensus 323 A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~ 397 (614)
..-++++| + .|...+++-.|.-+-..+..++=-.|+ ..-|+.++......+.+-++-+
T Consensus 171 V~fiLEQm-r----------------KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~ 233 (439)
T KOG1498|consen 171 VAFILEQM-R----------------LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCR 233 (439)
T ss_pred HHHHHHHH-H----------------HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 55555655 2 233344454554444444333323343 2346677777767777777777
Q ss_pred HHHhC
Q 038206 398 LVSNM 402 (614)
Q Consensus 398 ~~~~m 402 (614)
.++..
T Consensus 234 ~Yrai 238 (439)
T KOG1498|consen 234 SYRAI 238 (439)
T ss_pred HHHHH
Confidence 66665
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.38 E-value=2.5e+02 Score=21.62 Aligned_cols=53 Identities=2% Similarity=-0.063 Sum_probs=34.7
Q ss_pred HhcCchHHHHHHHHHHHHhcCCC---C-----chhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIESEGGI---C-----SGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~---~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+.|++..|.+.+.+..+....- . ......+.......|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888877766665542220 1 12223466677889999999999988654
No 420
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.14 E-value=3e+02 Score=21.86 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m 330 (614)
.++..|...|+.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555566666666666554
No 421
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.10 E-value=3.2e+02 Score=20.68 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038206 283 YCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 283 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 323 (614)
.+...+.+.|.++++.++.++..+|.++..++...|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34456678888888888888888898888888887765544
No 422
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.06 E-value=6.9e+02 Score=24.46 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----------cCCHH
Q 038206 324 LKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----------AGNID 393 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~ 393 (614)
.++++.| ++.++.|.-..|.-+.-.+++.=.+.....+++.+..+ ..-+..|+..|+. .|++.
T Consensus 263 ~EL~~~L-~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 263 EELWRHL-EEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred HHHHHHH-HhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 4566667 67777777777776666667766777777777776542 1224444444432 35555
Q ss_pred HHHHHHHhCC
Q 038206 394 EALHLVSNMP 403 (614)
Q Consensus 394 ~A~~~~~~m~ 403 (614)
.-.++++.-|
T Consensus 336 ~nmkLLQ~yp 345 (370)
T KOG4567|consen 336 VNMKLLQNYP 345 (370)
T ss_pred HHHHHHhcCC
Confidence 5566655543
No 423
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.98 E-value=2.7e+02 Score=29.70 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038206 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 400 (614)
+-+-.++.-| ...+.|--...+..--...-.|+...|..-+...... .-.-.-+..-.|...+.+.|...+|..++.
T Consensus 590 e~~~~~~~~~--~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 590 EIGSFLFHAI--NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHh--cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHHHHH
Q ss_pred hC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 401 NM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 401 ~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
+. -......++..+-+++ ....+++.|++.|+++++..++ ++..-+.|...-++.
T Consensus 667 q~l~~~~sepl~~~~~g~~~-l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 667 QALAINSSEPLTFLSLGNAY-LALKNISGALEAFRQALKLTTK-CPECENSLKLIRCMQ 723 (886)
T ss_pred HHHhhcccCchHHHhcchhH-HHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhh
No 424
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.98 E-value=9.4e+02 Score=26.01 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCC-hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIENPN-SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
..++.|+.+...=+.++-.+++.++.. . ...|..+++++... |.. .|+.+..+....+..
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~-GT~-~a~~~i~~~i~~~~~ 371 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQA-GTP-PALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc-CCH-HHHHHHHHHHHcCCC
Confidence 677888887776556666666666654 3 67888999999998 876 555555555555533
No 425
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.86 E-value=3.5e+02 Score=23.74 Aligned_cols=37 Identities=5% Similarity=-0.116 Sum_probs=15.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
.+.-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334445555555444444343332233344444443
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.85 E-value=1.7e+02 Score=20.93 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
|....++.++... +...-.+.++..+.++.+.|.- +..+|.--++.+++..-
T Consensus 6 ~~~~l~~Ql~el~-Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaReQF 57 (65)
T PF09454_consen 6 AEDPLSNQLYELV-AEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAREQF 57 (65)
T ss_dssp -SSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 5666777788877 7777788888888888887765 67777766666665443
No 427
>PRK11619 lytic murein transglycosylase; Provisional
Probab=23.83 E-value=1e+03 Score=26.34 Aligned_cols=322 Identities=12% Similarity=0.048 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH----HH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIENP---NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP----FA 141 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~----~l 141 (614)
..|.....++.+|++..+.++-..+... .-..|-.+...+.. ..+++...++++ . ||...-. ..
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~--~~~~ev~~Fl~~----~---~~~P~~~~Lr~~~ 105 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMN--QPAVQVTNFIRA----N---PTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcccc--CCHHHHHHHHHH----C---CCCchHHHHHHHH
Confidence 4455566666668888888877777542 23334443332221 233333333322 1 3322222 22
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhcCChh
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~ 218 (614)
+..+.+.+++....+.+. ..+.+......+..+....|+.++|......+ ........+.++..+.+.|...
T Consensus 106 l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 106 VNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 223344445544433211 12334444455556666667766555554444 1223456666666666666555
Q ss_pred HHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHh
Q 038206 219 SALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFE 297 (614)
Q Consensus 219 ~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~ 297 (614)
... ++.+|.. ....|+...+..+...+ +++ ......++..+.+ ...+...+.
T Consensus 181 ~~d-~w~R~~~---------------al~~~~~~lA~~l~~~l--------~~~~~~~a~a~~al~~~---p~~~~~~~~ 233 (644)
T PRK11619 181 PLA-YLERIRL---------------AMKAGNTGLVTYLAKQL--------PADYQTIASALIKLQND---PNTVETFAR 233 (644)
T ss_pred HHH-HHHHHHH---------------HHHCCCHHHHHHHHHhc--------ChhHHHHHHHHHHHHHC---HHHHHHHhh
Confidence 443 3333321 12344555554444332 122 1133344444433 333333333
Q ss_pred cCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhhcCCCccHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 298 SMPKRDLTSWNSIILGFA--LHGRAEAALKYFDRLVVEESFSPNSI--TFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 298 ~m~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
... ++...-...+.++. ...+.+.|..++.......+..+... ....+.......+...++...++.... -.
T Consensus 234 ~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~ 309 (644)
T PRK11619 234 TTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RS 309 (644)
T ss_pred ccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---cc
Confidence 321 12211111111222 23456788888887622333433332 223333222333224556666655422 11
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNMPM--KPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
.+......-+..-.+.++++.+...+..|+. +-...-..=+-.+. ...|+.+.|...|+.+.
T Consensus 310 ~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~-~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 310 QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL-LEQGRKAEAEEILRQLM 373 (644)
T ss_pred CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHH-HHcCCHHHHHHHHHHHh
Confidence 2444445555555688888888888888842 11122222344555 55788888888888863
No 428
>PF14044 NETI: NETI protein
Probab=23.74 E-value=67 Score=22.03 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHhhCCccCC
Q 038206 511 DLIDEKLKSRGYTPD 525 (614)
Q Consensus 511 ~~l~~~m~~~g~~p~ 525 (614)
...+.+|+++||.|-
T Consensus 11 ~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 11 SDCLARMKKEGYMPV 25 (57)
T ss_pred HHHHHHHHHcCCCce
Confidence 446778999999996
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.69 E-value=7.8e+02 Score=24.99 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=31.5
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccHH--HHHHHHHHHh--ccCCHHHHHHHHHHHHH
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNSI--TFVGVLSACN--HRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 368 (614)
+.+++..|.++|+++ ... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l-~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEEL-LRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHH-HHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888888887 444 444443 2333434442 45667777777777654
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.39 E-value=3.4e+02 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHhcCChhHHHHHHHHhhhccCC--ChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 210 AFVQFGEFDSALKLFRRMQILFEP--DGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~~~p--d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
+--+.|+..+|.+.|+++.+.++. --.....+|.+|.....+.....++...-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334566666666666666554110 011223455666555555554444444433
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.21 E-value=3.5e+02 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=11.9
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 038206 209 DAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~ 229 (614)
......|++++|+..+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666665543
No 432
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=22.79 E-value=1.7e+02 Score=26.02 Aligned_cols=45 Identities=7% Similarity=-0.073 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC----hhhHHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR----WNDVGLVRKLM 470 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 470 (614)
+++|..-|++++..+|+ ...++..+.++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 45666777777888888 77888888888876543 33444444443
No 433
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.71 E-value=2e+02 Score=21.06 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=20.3
Q ss_pred ChhHHHHHHhcCCC---CChhhHHHHHHHHHcC
Q 038206 82 DLDYAFRVFYQIEN---PNSFTWNTLIRACARS 111 (614)
Q Consensus 82 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 111 (614)
+.+.|+.++..+.. +++..||++..-+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 46667777766654 5677788877666664
No 434
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=22.57 E-value=4.8e+02 Score=22.12 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 393 DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 393 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
+.|.++.+-|+ .....-...... ...|++..|.++.+.++..+|+ |...-....++|...|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~-~~~gd~~wA~~L~d~l~~adp~-n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAA-LAAGDYQWAAELLDHLVFADPD-NEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHH-HHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHh
Confidence 45666666665 223333333444 5678999999999999999998 777777777777655543
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.38 E-value=3.9e+02 Score=22.74 Aligned_cols=46 Identities=7% Similarity=-0.032 Sum_probs=21.7
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
.+++.+...++.-.|..+|+.+.+.+...+..|.-.-++.+...|-
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444444444445555555555555544443333333444544443
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.36 E-value=4.7e+02 Score=22.24 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 86 AFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 86 A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
+.+.+.+-.-+-+.---.++..+.+. +..-.|.++|+++.+.+..
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~-~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEA-DGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCC
Confidence 33444333333333445566666666 5556777777777776633
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=22.14 E-value=4.2e+02 Score=21.30 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
..++|..+.+.+... +- ....+--+-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~---~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQE---GE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHT---TT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---Cc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 445566666665554 22 222233333456677888888865555666788888877655 467888888888877
Q ss_pred HhhhcCCCccHHHHH
Q 038206 330 LVVEESFSPNSITFV 344 (614)
Q Consensus 330 m~~~~g~~p~~~t~~ 344 (614)
+ ...| .|....|.
T Consensus 95 l-a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 95 L-ASSG-SPELQAFA 107 (116)
T ss_dssp H-CT-S-SHHHHHHH
T ss_pred H-HhCC-CHHHHHHH
Confidence 7 4333 44444443
No 438
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.06 E-value=87 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHhcCCCCchhHH-HHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 436 IESEGGICSGVYV-LLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 436 ~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
..+.|..+..-|+ ++++.+.+|.--++|.++++-|.++|
T Consensus 22 ~~l~~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 22 IRLEPKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred ccccccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
No 439
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.94 E-value=4e+02 Score=22.06 Aligned_cols=41 Identities=10% Similarity=0.380 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHh
Q 038206 154 GKQAHAHIFKRGLVSDV-YINNSLIHFYASCGHLDLANKVFD 194 (614)
Q Consensus 154 a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~ 194 (614)
...+|..|.+.|+-... ..|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555544332 234555555556666666666664
No 440
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=2.4e+02 Score=26.34 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 386 LARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
|....+++.|..-+.+. .+.|+..+|..==.-|..+.++++.+.+--.+.++..|+ .......|.........+++|.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccHHH
Q ss_pred HHHHHHHhCC
Q 038206 465 LVRKLMTDKG 474 (614)
Q Consensus 465 ~~~~~m~~~g 474 (614)
..+.+..+.+
T Consensus 99 ~~Lqra~sl~ 108 (284)
T KOG4642|consen 99 KVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHH
No 441
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.52 E-value=5.9e+02 Score=22.82 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCc--cHHHHHHHHH-----HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 320 AEAALKYFDRLVVEESFSP--NSITFVGVLS-----ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 320 ~~~A~~l~~~m~~~~g~~p--~~~t~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
.+.|+.+|+.+ ++.--.| -......++. .|.+.|.+++|.++++....+ |+......-+....+..+
T Consensus 85 LESAl~v~~~I-~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESI-EKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHHccc
No 442
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.23 E-value=3.8e+02 Score=20.47 Aligned_cols=42 Identities=19% Similarity=0.003 Sum_probs=32.2
Q ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 256 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
++|+..... |+..|+.+|..+++...-+=.++...++++.|.
T Consensus 29 EL~ELa~~A---Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLA---GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHh---CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777 888899999988888777666777777776664
No 443
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=8.8e+02 Score=24.64 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHhcCchHHHHHHHHHHHHhcCC-CC---
Q 038206 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSL------------LDACCKKHASVVLSEEVAKQVIESEGG-IC--- 443 (614)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--- 443 (614)
..|...+-.+|++++|..++.+.+++ ||+++ +.-| ...+|+-+|.-+-+++...-.+ |+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKO-G~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLC-LLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 45777888999999999999987633 44332 3445 6778888888887777655443 22
Q ss_pred --chhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEE
Q 038206 444 --SGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIE 485 (614)
Q Consensus 444 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 485 (614)
...|..++......+.+=++.+.++..-+.|........|+.
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 245778888888999999999999998877665443333443
No 444
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=21.14 E-value=1.4e+02 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
+...+.++..+.+-.-..|...+|-+|+++|.+.
T Consensus 540 nkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 540 NKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred chhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 3456666666665556677899999999999976
No 445
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.79 E-value=5.2e+02 Score=26.65 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC
Q 038206 399 VSNMPMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 399 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
|....++|. ..+.++-++.+ .+++|+..|-.+.+++++.+|.+
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~-~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQA-FKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHC-CCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCH
Confidence 333344543 34666777777 89999999999999999998873
No 446
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.52 E-value=6.5e+02 Score=22.83 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHH-----HHHHHccCCcHHHHHHHHHHHHhCCCCc--hh
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA-----LKACAYLFAFSQGKQAHAHIFKRGLVSD--VY 171 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~l-----l~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~ 171 (614)
..|..++..... +.+ +.......+.... ...+|..+ .+.+...++++.|...+...+..--..+ ..
T Consensus 55 ~~Y~~~i~~~~a--k~~-~~~~~~ekf~~~n----~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 55 AQYQNAIKAVQA--KKP-KSIAAAEKFVQAN----GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHhc--CCc-hhHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 345556655543 334 4555555665543 22334332 2346677888888888777664321111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVS--WNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+--.|.......|..|+|++.++....++-.+ -..--..+...|+-++|..-|.+....
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 22334456677788888888888776653222 222235788888888888888877654
No 447
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=20.48 E-value=60 Score=16.96 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=7.9
Q ss_pred chhhHHHHhhh
Q 038206 576 DCHEVTKLISR 586 (614)
Q Consensus 576 ~~~~a~~~~~~ 586 (614)
.+|+++|+++.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 46888888763
No 448
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.46 E-value=3.4e+02 Score=22.87 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=9.7
Q ss_pred HhcCchHHHHHHHHHHHHhcCC
Q 038206 420 KKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+.++++.++++.+.+++.+|+
T Consensus 82 yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 82 YRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHhhHHHHHHHHHHHHhhCCC
Confidence 3344444444444444444444
No 449
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=8.2e+02 Score=23.92 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=42.3
Q ss_pred HHHHhCCCCCCchHHHHHHHHH-HHhc-C-ChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 55 QALRTALPQQHKTLLIYSRIIH-FASF-A-DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 55 ~~~~~g~~~~~~~~~~~~~li~-~~~~-g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
.+...|.. +. .+.+.|.+ -+.+ | ...-|.++|..... ....|.+|+.+-+. +.-+.-+++| +
T Consensus 156 l~l~nGt~-~~---tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~--Ek~i~~lis~Lrkg-~md~rLmeff--------P 220 (412)
T KOG2297|consen 156 LLLSNGTL-PA---TVLQSLLNDNLVKEGIALSFAVKLFKEWLV--EKDINDLISSLRKG-KMDDRLMEFF--------P 220 (412)
T ss_pred HHHhCCCC-CH---HHHHHHHHhhHHHHhHHHHHHHHHHHHHHh--hccHHHHHHHHHhc-ChHhHHHHhc--------C
Confidence 34455665 33 45555554 3344 3 45567778876543 22346677777665 4444444544 4
Q ss_pred CCCcchHHHHHHHHHccC
Q 038206 132 LPDKHTFPFALKACAYLF 149 (614)
Q Consensus 132 ~p~~~t~~~ll~~~~~~~ 149 (614)
||..+-...-..+...|
T Consensus 221 -pnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 221 -PNKRSVEHFAKYFTDAG 237 (412)
T ss_pred -CcchhHHHHHHHHhHhh
Confidence 67666555555444433
No 450
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.07 E-value=8e+02 Score=23.72 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHH-------HHHHHHHHhccCCHHHH
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSIT-------FVGVLSACNHRGMVSEG 359 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a 359 (614)
-..+.+++++|+..+.++ ...|+..|..+ ...+...|...|+...-
T Consensus 12 ~~v~~~~~~~ai~~yk~i-L~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRI-LGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HhhhhhhHHHHHHHHHHH-hcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 345677888888888888 77777666544 34455556666655443
Done!