Query 038206
Match_columns 614
No_of_seqs 697 out of 4451
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.4E-37 8.1E-42 335.6 37.5 448 2-473 91-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.9E-35 3.1E-39 315.3 25.5 414 77-515 62-544 (597)
3 4g26_A Pentatricopeptide repea 100.0 5E-28 1.7E-32 252.4 17.3 211 116-352 7-222 (501)
4 4g26_A Pentatricopeptide repea 99.9 5.3E-27 1.8E-31 244.7 21.7 183 99-286 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.7E-28 213.8 40.3 363 81-458 13-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6E-23 2E-27 209.7 40.1 351 106-472 7-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.2E-20 1.1E-24 196.7 33.5 390 69-473 7-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4.2E-24 188.8 36.7 298 97-407 25-361 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 6.5E-20 2.2E-24 190.9 33.1 325 117-453 10-372 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.3E-19 4.5E-24 191.9 31.3 389 45-450 21-489 (514)
11 3fp2_A TPR repeat-containing p 99.8 4.1E-18 1.4E-22 181.6 32.2 385 70-473 27-491 (537)
12 1b89_A Protein (clathrin heavy 99.8 2.7E-18 9.2E-23 170.8 19.5 286 81-402 17-308 (449)
13 3ieg_A DNAJ homolog subfamily 99.8 2.4E-16 8.2E-21 158.2 32.5 313 97-456 2-352 (359)
14 3fp2_A TPR repeat-containing p 99.8 1.3E-16 4.4E-21 169.9 31.7 382 45-446 40-498 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 9.5E-16 3.3E-20 153.7 33.3 305 135-473 3-335 (359)
16 3hym_B Cell division cycle pro 99.7 1.6E-15 5.4E-20 150.4 29.9 279 133-454 20-314 (330)
17 3hym_B Cell division cycle pro 99.7 7.9E-15 2.7E-19 145.3 33.8 285 96-425 20-321 (330)
18 2ooe_A Cleavage stimulation fa 99.7 2.5E-14 8.5E-19 152.0 39.2 391 64-473 11-492 (530)
19 1fch_A Peroxisomal targeting s 99.7 1.8E-15 6.3E-20 152.6 24.8 278 183-469 38-355 (368)
20 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-17 5.5E-22 177.9 8.7 132 269-402 123-262 (1134)
21 1fch_A Peroxisomal targeting s 99.7 3.4E-15 1.2E-19 150.6 24.5 117 113-230 39-161 (368)
22 3spa_A Mtrpol, DNA-directed RN 99.7 8E-17 2.7E-21 172.5 11.4 147 304-458 127-286 (1134)
23 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4.1E-21 159.1 11.2 250 182-467 15-266 (449)
24 3mkr_A Coatomer subunit epsilo 99.7 1.8E-14 6.1E-19 140.0 25.5 242 207-467 40-288 (291)
25 4eqf_A PEX5-related protein; a 99.7 4.2E-15 1.4E-19 149.9 21.5 263 200-469 64-352 (365)
26 4eqf_A PEX5-related protein; a 99.6 1.1E-14 3.7E-19 146.9 21.3 227 134-367 64-308 (365)
27 2xm6_A Protein corresponding t 99.6 2.7E-12 9.3E-17 134.9 40.2 336 113-475 57-434 (490)
28 2ooe_A Cleavage stimulation fa 99.6 8.4E-13 2.9E-17 140.2 36.5 396 32-441 12-495 (530)
29 2xm6_A Protein corresponding t 99.6 1E-12 3.6E-17 138.0 36.8 365 64-455 37-451 (490)
30 3cv0_A Peroxisome targeting si 99.6 1.8E-13 6.1E-18 135.2 26.0 256 139-401 25-311 (327)
31 3cv0_A Peroxisome targeting si 99.6 3.9E-14 1.3E-18 140.0 21.1 273 171-470 22-312 (327)
32 1xi4_A Clathrin heavy chain; a 99.6 5.8E-12 2E-16 139.6 39.0 369 2-429 992-1375(1630)
33 4g1t_A Interferon-induced prot 99.6 1.1E-12 3.7E-17 137.1 32.2 144 319-476 315-462 (472)
34 1xi4_A Clathrin heavy chain; a 99.6 3.3E-11 1.1E-15 133.7 42.1 379 32-468 952-1340(1630)
35 3mkr_A Coatomer subunit epsilo 99.6 1E-12 3.5E-17 127.6 25.3 245 208-472 6-263 (291)
36 4g1t_A Interferon-induced prot 99.5 1.9E-11 6.4E-16 127.7 30.6 358 69-447 52-467 (472)
37 3uq3_A Heat shock protein STI1 99.4 1.1E-11 3.8E-16 117.6 22.0 189 271-473 36-236 (258)
38 2pl2_A Hypothetical conserved 99.4 7.6E-12 2.6E-16 115.8 19.0 194 270-470 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.4 1.9E-11 6.4E-16 116.0 21.9 222 171-439 6-237 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.4 9E-12 3.1E-16 119.6 18.0 215 238-467 46-269 (275)
41 3u4t_A TPR repeat-containing p 99.4 4.2E-11 1.4E-15 114.8 22.4 242 172-455 5-266 (272)
42 2ho1_A Type 4 fimbrial biogene 99.4 9.1E-11 3.1E-15 111.1 24.3 203 201-446 37-245 (252)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.7E-11 9.1E-16 116.3 20.7 211 113-330 19-241 (275)
44 2vq2_A PILW, putative fimbrial 99.3 1.2E-10 4E-15 107.9 21.8 198 271-473 6-211 (225)
45 3sf4_A G-protein-signaling mod 99.3 2E-10 7E-15 116.9 25.2 292 139-462 13-365 (406)
46 2pl2_A Hypothetical conserved 99.3 7.1E-11 2.4E-15 109.2 19.2 191 168-401 3-210 (217)
47 3e4b_A ALGK; tetratricopeptide 99.3 4.4E-10 1.5E-14 116.3 27.1 343 107-476 12-390 (452)
48 2vq2_A PILW, putative fimbrial 99.3 3.7E-10 1.3E-14 104.4 23.5 206 200-448 7-220 (225)
49 3u4t_A TPR repeat-containing p 99.3 3.4E-10 1.2E-14 108.4 24.0 238 135-414 3-261 (272)
50 2ho1_A Type 4 fimbrial biogene 99.3 2.5E-10 8.5E-15 108.0 22.6 191 98-330 37-235 (252)
51 2q7f_A YRRB protein; TPR, prot 99.3 4.5E-11 1.5E-15 112.4 17.0 197 271-473 21-222 (243)
52 2q7f_A YRRB protein; TPR, prot 99.3 4.4E-11 1.5E-15 112.4 16.7 209 200-452 22-235 (243)
53 3sf4_A G-protein-signaling mod 99.3 2.1E-10 7.1E-15 116.8 21.7 267 97-402 8-333 (406)
54 4a1s_A PINS, partner of inscut 99.3 9.1E-11 3.1E-15 120.0 17.8 265 172-472 50-371 (411)
55 3ro2_A PINS homolog, G-protein 99.3 2.8E-10 9.4E-15 112.3 20.7 63 377-440 264-334 (338)
56 3e4b_A ALGK; tetratricopeptide 99.3 3.7E-10 1.3E-14 116.9 22.1 367 81-472 17-420 (452)
57 1ouv_A Conserved hypothetical 99.3 2.6E-09 9E-14 102.4 26.6 158 274-440 75-253 (273)
58 4e6h_A MRNA 3'-END-processing 99.3 1E-08 3.5E-13 110.0 33.4 400 64-473 64-570 (679)
59 3ro2_A PINS homolog, G-protein 99.3 4E-10 1.4E-14 111.1 21.1 267 173-473 8-332 (338)
60 4a1s_A PINS, partner of inscut 99.2 2.3E-10 7.8E-15 117.0 19.1 99 342-441 265-375 (411)
61 2h6f_A Protein farnesyltransfe 99.2 4.7E-10 1.6E-14 112.7 20.5 241 203-455 99-364 (382)
62 1ouv_A Conserved hypothetical 99.2 4.4E-09 1.5E-13 100.9 26.6 224 200-475 5-253 (273)
63 2h6f_A Protein farnesyltransfe 99.2 2.8E-09 9.7E-14 107.0 24.3 211 98-317 97-322 (382)
64 4abn_A Tetratricopeptide repea 99.2 2.3E-10 7.9E-15 119.2 15.5 193 271-470 100-318 (474)
65 3vtx_A MAMA; tetratricopeptide 99.2 2.4E-09 8.1E-14 95.9 20.1 163 303-472 4-169 (184)
66 2ond_A Cleavage stimulation fa 99.2 8.7E-09 3E-13 100.8 25.5 181 252-441 81-273 (308)
67 3ulq_A Response regulator aspa 99.1 3.6E-09 1.2E-13 107.1 21.0 162 275-438 186-368 (383)
68 2ond_A Cleavage stimulation fa 99.1 7E-09 2.4E-13 101.4 22.4 113 116-230 33-163 (308)
69 3nf1_A KLC 1, kinesin light ch 99.1 5.9E-10 2E-14 108.8 13.5 48 423-471 258-305 (311)
70 3vtx_A MAMA; tetratricopeptide 99.1 9.4E-09 3.2E-13 91.9 20.0 157 170-330 5-167 (184)
71 3as5_A MAMA; tetratricopeptide 99.1 8.9E-09 3E-13 91.7 19.3 158 275-472 10-172 (186)
72 4abn_A Tetratricopeptide repea 99.1 4.8E-09 1.6E-13 109.2 18.9 208 115-366 84-318 (474)
73 3ulq_A Response regulator aspa 99.1 1E-08 3.5E-13 103.7 20.7 220 144-402 112-365 (383)
74 4e6h_A MRNA 3'-END-processing 99.0 2.3E-07 7.9E-12 99.5 31.5 370 96-475 64-535 (679)
75 3q15_A PSP28, response regulat 99.0 1.2E-07 4.2E-12 95.5 27.9 226 209-436 109-363 (378)
76 4gyw_A UDP-N-acetylglucosamine 99.0 7.5E-09 2.6E-13 112.4 18.7 160 304-471 9-172 (723)
77 3nf1_A KLC 1, kinesin light ch 99.0 8.2E-10 2.8E-14 107.8 10.1 129 98-228 27-180 (311)
78 3as5_A MAMA; tetratricopeptide 99.0 3E-08 1E-12 88.2 19.2 158 236-401 9-169 (186)
79 1hz4_A MALT regulatory protein 99.0 3.9E-07 1.3E-11 91.5 29.0 196 275-472 95-321 (373)
80 1hz4_A MALT regulatory protein 99.0 6.2E-07 2.1E-11 90.0 29.4 222 107-330 23-279 (373)
81 3q15_A PSP28, response regulat 99.0 9.8E-08 3.3E-12 96.2 23.3 226 243-472 109-364 (378)
82 4i17_A Hypothetical protein; T 98.9 9.7E-08 3.3E-12 88.6 19.9 203 233-453 5-223 (228)
83 3edt_B KLC 2, kinesin light ch 98.8 7.4E-08 2.5E-12 92.2 15.6 224 246-472 12-280 (283)
84 4gyw_A UDP-N-acetylglucosamine 98.8 2.5E-07 8.4E-12 100.5 19.7 156 69-229 10-173 (723)
85 2fo7_A Synthetic consensus TPR 98.7 3.3E-07 1.1E-11 76.3 15.5 122 347-472 8-131 (136)
86 3edt_B KLC 2, kinesin light ch 98.7 2.6E-07 8.7E-12 88.3 16.1 26 305-330 253-278 (283)
87 4i17_A Hypothetical protein; T 98.7 1.4E-06 4.7E-11 80.7 20.2 128 99-229 8-145 (228)
88 2uy1_A Cleavage stimulation fa 98.7 2.2E-05 7.7E-10 81.5 30.6 349 69-436 16-411 (493)
89 3mv2_B Coatomer subunit epsilo 98.7 6.9E-06 2.4E-10 78.3 24.1 162 303-472 99-281 (310)
90 3qky_A Outer membrane assembly 98.7 5.1E-06 1.7E-10 78.6 23.3 206 273-519 15-247 (261)
91 3qky_A Outer membrane assembly 98.7 1.2E-06 4E-11 83.1 18.4 202 232-460 12-248 (261)
92 1qqe_A Vesicular transport pro 98.7 7.6E-07 2.6E-11 86.1 17.3 234 153-438 3-269 (292)
93 2fo7_A Synthetic consensus TPR 98.6 8.1E-07 2.8E-11 73.9 15.2 131 306-441 3-135 (136)
94 1qqe_A Vesicular transport pro 98.6 2.7E-06 9.2E-11 82.2 19.2 85 145-229 47-146 (292)
95 2yhc_A BAMD, UPF0169 lipoprote 98.6 5.8E-06 2E-10 76.3 19.5 182 275-475 6-215 (225)
96 3mv2_B Coatomer subunit epsilo 98.5 1.5E-05 5.2E-10 75.9 22.1 167 270-446 97-289 (310)
97 4ga2_A E3 SUMO-protein ligase 98.5 2.8E-07 9.7E-12 79.1 9.4 140 313-459 6-149 (150)
98 3u3w_A Transcriptional activat 98.5 3.2E-05 1.1E-09 74.6 22.9 161 310-471 81-264 (293)
99 2uy1_A Cleavage stimulation fa 98.5 1.4E-05 4.9E-10 83.0 21.6 355 82-472 10-412 (493)
100 2r5s_A Uncharacterized protein 98.5 2.2E-06 7.6E-11 75.7 13.2 153 71-229 9-172 (176)
101 2r5s_A Uncharacterized protein 98.5 6.2E-06 2.1E-10 72.8 16.2 156 275-470 8-170 (176)
102 2pzi_A Probable serine/threoni 98.4 5.1E-06 1.7E-10 90.4 18.0 168 146-319 402-583 (681)
103 2ifu_A Gamma-SNAP; membrane fu 98.4 1.1E-05 3.7E-10 78.5 18.3 24 378-401 197-220 (307)
104 3qou_A Protein YBBN; thioredox 98.4 8.2E-06 2.8E-10 78.5 16.3 170 293-470 106-281 (287)
105 2pzi_A Probable serine/threoni 98.4 7.1E-06 2.4E-10 89.3 17.6 182 109-300 402-603 (681)
106 2vsy_A XCC0866; transferase, g 98.4 5E-06 1.7E-10 88.7 16.0 159 286-451 2-169 (568)
107 2vsy_A XCC0866; transferase, g 98.4 9.1E-06 3.1E-10 86.6 17.8 146 248-402 2-154 (568)
108 3urz_A Uncharacterized protein 98.4 1.1E-05 3.9E-10 73.3 15.9 132 277-414 58-196 (208)
109 3gyz_A Chaperone protein IPGC; 98.4 2.8E-06 9.4E-11 72.8 10.9 100 372-473 31-133 (151)
110 4ga2_A E3 SUMO-protein ligase 98.3 8.3E-07 2.8E-11 76.2 7.5 120 348-472 5-128 (150)
111 3urz_A Uncharacterized protein 98.3 1.5E-05 5.3E-10 72.4 16.4 130 176-346 60-196 (208)
112 3rjv_A Putative SEL1 repeat pr 98.3 3.9E-05 1.3E-09 70.0 18.8 162 302-475 16-199 (212)
113 3qou_A Protein YBBN; thioredox 98.3 1.9E-05 6.7E-10 75.8 17.3 157 134-329 116-280 (287)
114 2ifu_A Gamma-SNAP; membrane fu 98.3 1.7E-05 5.7E-10 77.2 16.8 222 214-466 4-254 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.2E-05 7.6E-10 71.4 16.3 142 278-441 11-153 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.7E-05 9.3E-10 70.8 16.9 89 237-333 8-99 (213)
117 4gco_A Protein STI-1; structur 98.3 1.1E-05 3.7E-10 66.7 12.4 113 336-452 8-123 (126)
118 3dra_A Protein farnesyltransfe 98.3 0.00073 2.5E-08 64.9 26.9 132 113-248 47-193 (306)
119 1na0_A Designed protein CTPR3; 98.2 2.1E-05 7.3E-10 64.0 13.8 113 341-457 10-124 (125)
120 2yhc_A BAMD, UPF0169 lipoprote 98.2 4.5E-05 1.5E-09 70.3 17.2 48 81-129 18-71 (225)
121 1a17_A Serine/threonine protei 98.2 2.5E-05 8.5E-10 67.6 14.7 126 342-471 15-144 (166)
122 2qfc_A PLCR protein; TPR, HTH, 98.2 6.5E-05 2.2E-09 72.4 18.8 164 306-471 77-264 (293)
123 2vyi_A SGTA protein; chaperone 98.2 2.3E-05 7.8E-10 64.5 13.2 117 340-460 12-130 (131)
124 4gco_A Protein STI-1; structur 98.2 1.1E-05 3.7E-10 66.7 10.6 99 372-472 8-109 (126)
125 3u3w_A Transcriptional activat 98.2 0.0001 3.6E-09 70.9 19.1 147 81-228 89-264 (293)
126 3rjv_A Putative SEL1 repeat pr 98.2 6.7E-05 2.3E-09 68.4 16.5 159 96-264 16-197 (212)
127 2qfc_A PLCR protein; TPR, HTH, 98.2 4.1E-05 1.4E-09 73.8 15.7 162 275-438 77-266 (293)
128 2lni_A Stress-induced-phosphop 98.1 3.6E-05 1.2E-09 63.6 12.7 114 341-458 17-132 (133)
129 2vgx_A Chaperone SYCD; alterna 98.1 9.2E-06 3.2E-10 69.3 9.0 99 372-472 16-117 (148)
130 4f3v_A ESX-1 secretion system 98.1 0.00011 3.7E-09 69.1 16.7 125 275-402 104-234 (282)
131 1p5q_A FKBP52, FK506-binding p 98.1 3.2E-05 1.1E-09 76.2 13.8 144 303-471 146-292 (336)
132 3gw4_A Uncharacterized protein 98.1 2.3E-05 7.8E-10 70.6 11.6 149 81-230 6-176 (203)
133 2c2l_A CHIP, carboxy terminus 98.1 8.3E-06 2.8E-10 78.2 8.5 188 273-473 4-199 (281)
134 2c2l_A CHIP, carboxy terminus 98.1 4.5E-05 1.5E-09 73.0 13.6 187 134-330 3-196 (281)
135 2e2e_A Formate-dependent nitri 98.0 1.8E-05 6E-10 69.8 9.9 119 351-473 21-144 (177)
136 1a17_A Serine/threonine protei 98.0 9E-05 3.1E-09 64.0 14.3 126 99-228 14-144 (166)
137 3gw4_A Uncharacterized protein 98.0 6.6E-05 2.3E-09 67.4 13.4 152 285-438 4-176 (203)
138 4f3v_A ESX-1 secretion system 98.0 8.8E-05 3E-09 69.7 14.3 126 204-369 105-237 (282)
139 1na0_A Designed protein CTPR3; 98.0 0.00016 5.4E-09 58.7 14.4 87 141-228 15-104 (125)
140 2xcb_A PCRH, regulatory protei 98.0 5.7E-05 2E-09 63.7 11.8 95 376-472 18-114 (142)
141 3dra_A Protein farnesyltransfe 98.0 0.0033 1.1E-07 60.2 25.2 212 150-367 48-285 (306)
142 2lni_A Stress-induced-phosphop 98.0 9.1E-05 3.1E-09 61.1 12.0 98 374-473 14-113 (133)
143 3upv_A Heat shock protein STI1 97.9 7.3E-05 2.5E-09 61.4 11.2 94 377-472 5-100 (126)
144 2e2e_A Formate-dependent nitri 97.9 6.8E-05 2.3E-09 65.9 11.7 115 113-230 24-144 (177)
145 2vyi_A SGTA protein; chaperone 97.9 0.00018 6.1E-09 58.9 13.5 114 99-216 13-129 (131)
146 3q49_B STIP1 homology and U bo 97.9 0.00013 4.3E-09 60.8 12.4 97 374-472 7-105 (137)
147 3gyz_A Chaperone protein IPGC; 97.9 9E-05 3.1E-09 63.2 11.3 103 336-441 31-136 (151)
148 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00014 4.8E-09 65.3 13.1 170 280-474 11-187 (198)
149 3q7a_A Farnesyltransferase alp 97.9 0.01 3.5E-07 57.6 26.7 179 101-288 57-257 (349)
150 1elw_A TPR1-domain of HOP; HOP 97.9 0.00024 8.3E-09 56.9 13.3 94 345-441 9-104 (118)
151 3sz7_A HSC70 cochaperone (SGT) 97.9 7.6E-05 2.6E-09 64.7 10.8 98 341-441 12-111 (164)
152 1elw_A TPR1-domain of HOP; HOP 97.9 0.00014 4.7E-09 58.4 11.7 97 375-473 3-101 (118)
153 2dba_A Smooth muscle cell asso 97.9 0.00017 5.9E-09 60.7 12.6 93 377-471 29-126 (148)
154 1hxi_A PEX5, peroxisome target 97.9 8.3E-05 2.8E-09 60.8 9.9 93 379-473 20-114 (121)
155 3upv_A Heat shock protein STI1 97.8 0.00021 7.1E-09 58.6 12.2 95 342-439 6-102 (126)
156 1p5q_A FKBP52, FK506-binding p 97.8 0.00018 6.1E-09 70.8 13.1 143 81-228 127-292 (336)
157 2xcb_A PCRH, regulatory protei 97.8 0.00016 5.6E-09 60.8 11.1 102 342-447 20-123 (142)
158 2dba_A Smooth muscle cell asso 97.8 0.00061 2.1E-08 57.2 14.6 107 342-453 30-142 (148)
159 2vgx_A Chaperone SYCD; alterna 97.8 0.00021 7.2E-09 60.7 11.5 106 336-445 16-124 (148)
160 3sz7_A HSC70 cochaperone (SGT) 97.8 0.0003 1E-08 60.8 12.7 95 303-402 10-105 (164)
161 2fbn_A 70 kDa peptidylprolyl i 97.8 5.3E-05 1.8E-09 68.1 8.0 146 72-219 8-174 (198)
162 4b4t_Q 26S proteasome regulato 97.7 0.00035 1.2E-08 71.3 14.1 165 306-471 57-243 (434)
163 4gcn_A Protein STI-1; structur 97.7 0.00016 5.3E-09 59.7 9.3 93 378-472 10-111 (127)
164 2kck_A TPR repeat; tetratricop 97.7 0.00031 1.1E-08 55.7 10.8 95 378-473 8-106 (112)
165 2kck_A TPR repeat; tetratricop 97.7 0.00033 1.1E-08 55.5 10.5 98 341-441 7-109 (112)
166 1wao_1 Serine/threonine protei 97.7 0.00016 5.5E-09 74.8 10.5 116 349-468 15-134 (477)
167 4b4t_Q 26S proteasome regulato 97.6 0.00084 2.9E-08 68.4 15.6 190 107-330 13-242 (434)
168 1elr_A TPR2A-domain of HOP; HO 97.6 0.00032 1.1E-08 57.4 10.1 94 377-472 5-107 (131)
169 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00056 1.9E-08 70.4 13.7 96 376-473 317-415 (457)
170 2xev_A YBGF; tetratricopeptide 97.6 0.00029 1E-08 57.8 9.5 88 383-472 9-104 (129)
171 1wao_1 Serine/threonine protei 97.6 0.0006 2E-08 70.5 13.8 117 279-400 12-134 (477)
172 3q7a_A Farnesyltransferase alp 97.6 0.025 8.6E-07 54.9 23.9 171 213-391 66-257 (349)
173 1elr_A TPR2A-domain of HOP; HO 97.6 0.00034 1.2E-08 57.2 9.5 94 344-440 8-110 (131)
174 3ro3_A PINS homolog, G-protein 97.5 0.00088 3E-08 57.0 12.0 94 378-472 51-157 (164)
175 2hr2_A Hypothetical protein; a 97.5 0.00045 1.5E-08 58.6 9.5 90 381-472 16-130 (159)
176 3q49_B STIP1 homology and U bo 97.5 0.0012 4.3E-08 54.6 12.4 93 136-229 10-105 (137)
177 2xev_A YBGF; tetratricopeptide 97.5 0.0017 5.9E-08 53.0 12.8 93 348-441 10-108 (129)
178 3ro3_A PINS homolog, G-protein 97.5 0.00085 2.9E-08 57.1 11.1 96 343-439 52-159 (164)
179 3k9i_A BH0479 protein; putativ 97.5 0.00013 4.4E-09 59.1 5.3 87 353-441 3-93 (117)
180 4gcn_A Protein STI-1; structur 97.5 0.0011 3.7E-08 54.5 11.0 27 203-229 85-111 (127)
181 3dss_A Geranylgeranyl transfer 97.4 0.027 9.4E-07 54.3 21.9 181 252-441 91-307 (331)
182 3rkv_A Putative peptidylprolyl 97.4 0.00077 2.6E-08 58.0 9.8 62 409-472 64-125 (162)
183 1hxi_A PEX5, peroxisome target 97.3 0.001 3.5E-08 54.1 9.4 92 101-196 20-111 (121)
184 1ihg_A Cyclophilin 40; ppiase 97.3 0.0016 5.5E-08 64.8 12.4 138 304-466 223-363 (370)
185 3n71_A Histone lysine methyltr 97.2 0.0038 1.3E-07 64.2 14.4 124 349-474 318-465 (490)
186 3rkv_A Putative peptidylprolyl 97.2 0.0013 4.4E-08 56.6 9.2 67 376-444 63-131 (162)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0024 8.3E-08 65.6 12.3 143 81-228 248-413 (457)
188 2l6j_A TPR repeat-containing p 97.2 0.00028 9.4E-09 56.1 4.1 92 375-468 3-102 (111)
189 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0014 4.7E-08 64.4 9.7 145 305-472 180-327 (338)
190 3k9i_A BH0479 protein; putativ 97.1 0.00073 2.5E-08 54.5 6.4 59 272-330 26-87 (117)
191 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0024 8.3E-08 62.6 10.6 93 99-196 180-290 (338)
192 3dss_A Geranylgeranyl transfer 97.1 0.18 6.1E-06 48.6 23.4 126 116-245 47-189 (331)
193 3ma5_A Tetratricopeptide repea 97.0 0.003 1E-07 49.1 9.0 64 407-472 6-69 (100)
194 1na3_A Designed protein CTPR2; 97.0 0.004 1.4E-07 47.0 9.4 81 376-458 9-91 (91)
195 2kat_A Uncharacterized protein 97.0 0.0021 7.2E-08 51.4 8.0 64 407-472 18-81 (115)
196 1dce_A Protein (RAB geranylger 97.0 0.036 1.2E-06 58.3 19.4 168 288-462 44-244 (567)
197 3n71_A Histone lysine methyltr 96.9 0.0072 2.5E-07 62.2 12.4 127 313-439 318-465 (490)
198 1ihg_A Cyclophilin 40; ppiase 96.9 0.0061 2.1E-07 60.5 11.5 116 173-292 226-360 (370)
199 2hr2_A Hypothetical protein; a 96.8 0.006 2E-07 51.6 8.9 67 378-446 59-138 (159)
200 2kat_A Uncharacterized protein 96.7 0.0099 3.4E-07 47.3 9.8 59 170-228 19-80 (115)
201 1zu2_A Mitochondrial import re 96.6 0.0021 7.3E-08 54.3 5.1 85 387-473 13-120 (158)
202 2l6j_A TPR repeat-containing p 96.5 0.0098 3.4E-07 46.7 8.4 65 407-473 3-67 (111)
203 3mkq_A Coatomer beta'-subunit; 96.5 0.17 5.7E-06 55.9 20.8 164 109-329 610-774 (814)
204 3ma5_A Tetratricopeptide repea 96.4 0.019 6.4E-07 44.5 9.0 61 169-229 6-69 (100)
205 1dce_A Protein (RAB geranylger 96.3 0.28 9.5E-06 51.5 20.4 168 113-288 43-241 (567)
206 1klx_A Cysteine rich protein B 96.3 0.025 8.7E-07 46.9 10.0 110 319-439 10-127 (138)
207 1klx_A Cysteine rich protein B 96.3 0.043 1.5E-06 45.5 11.4 113 354-476 9-129 (138)
208 3bee_A Putative YFRE protein; 96.3 0.031 1.1E-06 42.6 9.5 68 406-475 4-74 (93)
209 1na3_A Designed protein CTPR2; 96.2 0.037 1.3E-06 41.3 9.5 79 99-181 10-88 (91)
210 1zu2_A Mitochondrial import re 95.9 0.011 3.8E-07 49.9 5.7 109 354-473 16-147 (158)
211 3qwp_A SET and MYND domain-con 95.8 0.038 1.3E-06 55.8 10.2 116 383-518 294-427 (429)
212 1wy6_A Hypothetical protein ST 95.5 0.44 1.5E-05 38.3 12.9 140 315-476 18-157 (172)
213 3mkq_A Coatomer beta'-subunit; 95.5 0.29 1E-05 53.9 17.1 104 281-403 660-763 (814)
214 3qww_A SET and MYND domain-con 95.2 0.095 3.2E-06 52.9 10.7 83 147-229 310-410 (433)
215 3qwp_A SET and MYND domain-con 95.1 0.18 6.1E-06 50.9 12.5 98 347-446 294-412 (429)
216 3qww_A SET and MYND domain-con 95.1 0.033 1.1E-06 56.2 6.9 82 389-472 311-410 (433)
217 3ly7_A Transcriptional activat 95.0 0.76 2.6E-05 44.6 15.9 35 303-340 193-232 (372)
218 2kc7_A BFR218_protein; tetratr 95.0 0.16 5.3E-06 38.7 9.2 64 382-447 6-72 (99)
219 2kc7_A BFR218_protein; tetratr 95.0 0.067 2.3E-06 40.8 7.1 56 416-473 8-64 (99)
220 3mkq_B Coatomer subunit alpha; 94.7 0.89 3E-05 38.9 13.7 130 280-435 12-141 (177)
221 3ly7_A Transcriptional activat 94.5 1.8 6.1E-05 42.0 17.1 148 86-238 183-346 (372)
222 1pc2_A Mitochondria fission pr 93.9 0.52 1.8E-05 39.2 10.4 66 406-472 30-99 (152)
223 3mkq_B Coatomer subunit alpha; 93.3 3.5 0.00012 35.2 17.8 129 178-330 13-141 (177)
224 3lvg_A Clathrin heavy chain 1; 93.1 0.0023 8E-08 63.4 -6.0 223 82-328 40-286 (624)
225 3u64_A Protein TP_0956; tetrat 92.9 0.48 1.6E-05 44.1 9.4 68 408-476 199-272 (301)
226 3u64_A Protein TP_0956; tetrat 91.7 0.99 3.4E-05 42.0 9.9 66 376-441 199-272 (301)
227 2v5f_A Prolyl 4-hydroxylase su 91.6 1.3 4.5E-05 34.1 9.4 66 379-446 8-82 (104)
228 3bee_A Putative YFRE protein; 91.5 1.8 6.2E-05 32.5 9.8 45 186-230 25-72 (93)
229 1pc2_A Mitochondria fission pr 91.2 1.1 3.8E-05 37.2 8.8 86 357-446 15-107 (152)
230 1wy6_A Hypothetical protein ST 90.9 5.4 0.00018 32.2 15.3 65 200-264 90-154 (172)
231 2v5f_A Prolyl 4-hydroxylase su 88.9 2 6.8E-05 33.0 8.3 65 407-472 4-74 (104)
232 4b4t_P 26S proteasome regulato 88.6 21 0.0007 35.9 17.7 96 306-402 139-244 (445)
233 4gns_B Protein CSD3, chitin bi 88.2 2 6.7E-05 46.2 10.1 51 420-471 348-398 (754)
234 3lvg_A Clathrin heavy chain 1; 88.1 0.02 7E-07 56.9 -4.6 235 69-325 55-325 (624)
235 4h7y_A Dual specificity protei 85.5 6.8 0.00023 32.3 9.5 53 423-476 74-126 (161)
236 2wpv_A GET4, UPF0363 protein Y 85.1 26 0.00088 33.0 19.0 170 172-368 35-216 (312)
237 4h7y_A Dual specificity protei 83.3 8.7 0.0003 31.7 9.2 97 96-196 11-120 (161)
238 1v54_E Cytochrome C oxidase po 83.2 6.8 0.00023 29.6 7.8 63 319-384 25-87 (109)
239 2ff4_A Probable regulatory pro 83.0 3.1 0.0001 41.1 8.1 66 414-481 177-247 (388)
240 2qx5_A Nucleoporin NIC96; mRNA 82.8 51 0.0017 34.8 17.5 22 387-408 549-570 (661)
241 4b4t_P 26S proteasome regulato 81.7 45 0.0015 33.3 21.8 314 113-476 30-389 (445)
242 3ffl_A Anaphase-promoting comp 81.6 13 0.00045 31.1 10.0 30 376-405 122-151 (167)
243 1qsa_A Protein (soluble lytic 81.3 57 0.0019 34.2 25.1 115 318-437 228-347 (618)
244 1v54_E Cytochrome C oxidase po 80.0 6.4 0.00022 29.8 6.7 59 117-177 28-86 (109)
245 1nzn_A CGI-135 protein, fissio 80.0 7.7 0.00026 30.9 7.8 26 420-446 85-110 (126)
246 4fhn_B Nucleoporin NUP120; pro 79.5 36 0.0012 38.9 16.4 189 275-467 814-1043(1139)
247 1nzn_A CGI-135 protein, fissio 79.2 18 0.00062 28.7 9.7 92 312-407 9-106 (126)
248 2y69_E Cytochrome C oxidase su 75.5 16 0.00055 29.3 8.2 63 319-384 68-130 (152)
249 4gns_B Protein CSD3, chitin bi 74.3 22 0.00076 38.2 11.8 123 174-300 252-398 (754)
250 4ady_A RPN2, 26S proteasome re 73.7 49 0.0017 36.4 14.3 251 139-402 343-620 (963)
251 4fhn_B Nucleoporin NUP120; pro 72.4 29 0.00098 39.7 13.0 169 174-361 816-992 (1139)
252 2ff4_A Probable regulatory pro 71.5 12 0.00042 36.7 8.6 66 104-172 177-247 (388)
253 3lpz_A GET4 (YOR164C homolog); 71.4 71 0.0024 30.3 21.3 170 172-368 37-215 (336)
254 4ady_A RPN2, 26S proteasome re 70.5 1.3E+02 0.0046 33.1 21.3 241 81-330 388-655 (963)
255 2uwj_G Type III export protein 68.2 36 0.0012 25.6 8.7 86 149-238 20-105 (115)
256 2y69_E Cytochrome C oxidase su 68.2 17 0.00056 29.2 6.7 59 117-177 71-129 (152)
257 2p58_C Putative type III secre 67.1 38 0.0013 25.5 9.5 83 149-235 21-103 (116)
258 1y8m_A FIS1; mitochondria, unk 66.0 52 0.0018 26.7 13.5 50 423-472 56-105 (144)
259 3txn_A 26S proteasome regulato 65.2 1.1E+02 0.0036 30.0 21.5 125 69-195 20-164 (394)
260 3o48_A Mitochondria fission 1 64.0 15 0.00051 29.5 5.9 49 424-472 58-106 (134)
261 3o48_A Mitochondria fission 1 63.5 52 0.0018 26.3 8.9 71 336-407 36-110 (134)
262 1wdy_A 2-5A-dependent ribonucl 62.8 78 0.0027 28.5 12.1 207 74-297 8-240 (285)
263 2uwj_G Type III export protein 61.9 49 0.0017 24.9 10.2 87 250-345 21-107 (115)
264 2wpv_A GET4, UPF0363 protein Y 61.7 1.1E+02 0.0036 28.8 19.6 168 275-471 35-215 (312)
265 3ffl_A Anaphase-promoting comp 61.7 71 0.0024 26.7 11.6 121 164-300 12-149 (167)
266 2p58_C Putative type III secre 60.8 51 0.0018 24.8 10.8 87 250-345 22-108 (116)
267 3ltm_A Alpha-REP4; protein eng 59.7 84 0.0029 27.0 19.5 80 168-250 93-172 (211)
268 3l6a_A Eukaryotic translation 58.8 85 0.0029 30.3 11.5 61 71-131 15-80 (364)
269 1y8m_A FIS1; mitochondria, unk 55.7 82 0.0028 25.6 9.6 30 415-446 84-113 (144)
270 4a1g_A Mitotic checkpoint seri 53.4 66 0.0023 26.4 8.3 84 84-170 52-136 (152)
271 3lpz_A GET4 (YOR164C homolog); 51.6 1.6E+02 0.0056 27.8 22.3 166 276-472 38-215 (336)
272 1wdy_A 2-5A-dependent ribonucl 51.1 1.1E+02 0.0038 27.4 11.0 19 384-402 224-242 (285)
273 3esl_A Checkpoint serine/threo 50.5 73 0.0025 27.6 8.4 58 113-170 93-150 (202)
274 3eu9_A Huntingtin-interacting 50.5 1.2E+02 0.0043 26.2 11.0 104 81-195 20-131 (240)
275 3ltm_A Alpha-REP4; protein eng 49.2 1.3E+02 0.0043 25.8 19.3 49 168-216 31-79 (211)
276 2qx5_A Nucleoporin NIC96; mRNA 48.4 2.7E+02 0.0091 29.3 15.9 34 179-230 452-485 (661)
277 1zbp_A Hypothetical protein VP 48.2 44 0.0015 30.6 6.9 57 384-441 5-63 (273)
278 3eiq_C Programmed cell death p 48.1 1.4E+02 0.0049 28.5 11.0 65 276-341 220-289 (358)
279 4b4t_R RPN7, 26S proteasome re 47.9 44 0.0015 33.2 7.9 31 443-475 346-376 (429)
280 1n11_A Ankyrin; clathrin, BAND 47.1 1.2E+02 0.0041 29.7 11.2 15 81-95 25-39 (437)
281 1qsa_A Protein (soluble lytic 46.0 2.8E+02 0.0096 28.9 34.3 411 34-478 41-484 (618)
282 4b4t_R RPN7, 26S proteasome re 44.3 1.2E+02 0.0043 29.8 10.5 95 136-230 132-237 (429)
283 1zbp_A Hypothetical protein VP 43.0 55 0.0019 29.9 6.8 52 349-402 6-57 (273)
284 3esl_A Checkpoint serine/threo 40.9 1.8E+02 0.0061 25.2 10.4 102 394-522 62-168 (202)
285 3hra_A Ankyrin repeat family p 40.3 1.5E+02 0.0051 24.9 9.4 13 81-93 16-28 (201)
286 3kea_A K1L; tropism, ANK repea 39.6 1.8E+02 0.0061 26.5 10.3 22 175-196 131-152 (285)
287 2wvi_A Mitotic checkpoint seri 39.6 1.6E+02 0.0056 24.4 9.2 57 116-172 77-133 (164)
288 4aez_C MAD3, mitotic spindle c 38.5 1.3E+02 0.0043 26.6 8.2 103 64-170 69-185 (223)
289 3ltj_A Alpharep-4; protein eng 36.0 2E+02 0.0067 24.3 19.1 48 169-216 27-74 (201)
290 1k1a_A B-cell lymphoma 3-encod 35.1 2E+02 0.0068 24.9 9.7 17 281-297 155-171 (241)
291 2d2s_A Exocyst complex compone 34.7 1.4E+02 0.0049 26.6 8.2 24 207-230 24-47 (235)
292 3jxi_A Vanilloid receptor-rela 34.7 1.2E+02 0.0042 26.9 8.3 84 113-197 16-117 (260)
293 2nsz_A Programmed cell death p 34.4 1.7E+02 0.0058 23.1 8.6 60 276-336 10-74 (129)
294 2k0q_A Putative uncharacterize 34.4 13 0.00046 25.5 1.0 22 589-610 7-28 (74)
295 2l0z_A Glycoprotein G2; zinc-b 34.0 14 0.00047 22.3 0.9 10 604-613 20-29 (42)
296 4b4t_S RPN3, 26S proteasome re 31.5 4.2E+02 0.014 26.8 12.0 25 100-125 233-257 (523)
297 1ug3_A EIF4GI, eukaryotic prot 31.0 2.2E+02 0.0077 26.9 9.5 28 276-303 14-41 (339)
298 2ion_A PDCD4, programmed cell 30.9 1.6E+02 0.0054 24.2 7.2 59 276-335 12-75 (152)
299 2b7e_A PRE-mRNA processing pro 30.4 50 0.0017 22.1 3.2 30 115-145 2-31 (59)
300 4b4t_S RPN3, 26S proteasome re 29.2 1.1E+02 0.0039 30.9 7.2 59 171-229 232-298 (523)
301 2d2s_A Exocyst complex compone 28.6 2.1E+02 0.0072 25.4 8.3 23 104-127 24-46 (235)
302 3ltj_A Alpharep-4; protein eng 28.5 2.6E+02 0.009 23.4 19.8 145 93-250 23-167 (201)
303 3b7b_A Euchromatic histone-lys 27.0 2.2E+02 0.0077 24.5 8.5 17 350-366 217-233 (237)
304 2lo3_A SAGA-associated factor 26.1 16 0.00056 22.2 0.3 11 570-580 16-26 (44)
305 3kea_A K1L; tropism, ANK repea 25.3 1.7E+02 0.0059 26.6 7.5 181 280-479 35-223 (285)
306 2pk8_A Uncharacterized protein 25.0 30 0.001 25.3 1.5 30 501-530 13-42 (103)
307 2ion_A PDCD4, programmed cell 24.6 2.4E+02 0.0081 23.1 7.2 66 306-374 11-78 (152)
308 3qye_A TBC1 domain family memb 23.8 4.5E+02 0.015 24.5 11.1 129 114-249 164-308 (331)
309 3ygs_P Procaspase 9; apoptosis 23.6 1E+02 0.0035 22.9 4.4 38 184-221 51-88 (97)
310 2pnn_A Transient receptor pote 23.4 2.7E+02 0.0092 24.8 8.4 94 99-196 12-124 (273)
311 3eu9_A Huntingtin-interacting 23.2 2.3E+02 0.0079 24.3 7.8 52 141-196 45-99 (240)
312 2p1h_A APAF-1, apoptotic prote 22.6 2.3E+02 0.0078 20.7 6.8 62 154-219 24-85 (94)
313 2nsz_A Programmed cell death p 22.3 2.9E+02 0.0098 21.7 8.5 66 306-374 9-76 (129)
314 4a1g_A Mitotic checkpoint seri 22.3 3.2E+02 0.011 22.3 9.5 52 426-477 82-134 (152)
315 1k1a_A B-cell lymphoma 3-encod 21.7 3.8E+02 0.013 22.9 10.0 84 108-197 16-103 (241)
316 1wgl_A TOLL-interacting protei 21.5 70 0.0024 21.4 2.7 46 431-478 12-57 (59)
317 2zu6_B Programmed cell death p 21.1 5E+02 0.017 24.1 16.0 26 277-302 170-195 (307)
318 3ygs_P Procaspase 9; apoptosis 21.0 1E+02 0.0035 23.0 4.0 62 51-118 25-87 (97)
319 4aez_C MAD3, mitotic spindle c 20.2 1.7E+02 0.0058 25.8 5.7 52 426-477 131-183 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-37 Score=335.56 Aligned_cols=448 Identities=8% Similarity=-0.044 Sum_probs=354.8
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHH
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFA 78 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~ 78 (614)
+.+|.+.|++++ |+++|++|.. ..|+..++..+...|...++. ..++..+.. .+ ++ + .+++.++.+|
T Consensus 91 ~~~~~~~g~~~~---A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~-~~~~~l~~~~ 160 (597)
T 2xpi_A 91 RHDALMQQQYKC---AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YN-RS-S-ACRYLAAFCL 160 (597)
T ss_dssp HHHHHHTTCHHH---HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GG-TC-H-HHHHHHHHHH
T ss_pred HHHHHHccCchH---HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cc-cc-h-hHHHHHHHHH
Confidence 556777777765 5577777763 356666666666666655555 333332221 23 55 6 7777777777
Q ss_pred hc-CChhHHHHHHhcCCC-C------------------ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-h
Q 038206 79 SF-ADLDYAFRVFYQIEN-P------------------NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-T 137 (614)
Q Consensus 79 ~~-g~~~~A~~~f~~m~~-~------------------~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-t 137 (614)
.+ |++++|.++|+++.. . ++.+|+.++.+|.+. |++++|+++|++|.+.+ |+.. .
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~---p~~~~~ 236 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVD---AKCYEA 236 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC---chhhHH
Confidence 77 777777777774332 2 366777777777777 77777777777777765 4433 3
Q ss_pred HHHHHHHHHccCCcHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHH
Q 038206 138 FPFALKACAYLFAFSQ--GKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFV 212 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~ 212 (614)
+..+...+...+..+. +..+ +..+...+..+...+|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 3333332222211111 1111 33344444444555677778899999999999999999987 78999999999999
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
+.|++++|+++|+++....+.+..++..++.++...|+.+++..++..+.+. .+.+..+++.++.+|.++|++++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999998765568889999999999999999999999999975 456788999999999999999999
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 293 RQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 293 ~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
.++|+++. ..+..+|+.++.+|.+.|++++|+++|++| ... .+.+..++..+..+|.+.|++++|.++|+.+.+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA-ARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999875 357889999999999999999999999999 543 2346789999999999999999999999999763
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
.+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+| .+.|++++|.+.++++.+.+|
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY-RKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSS
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCC
Confidence 3447889999999999999999999999987 45787 78999999999 999999999999999999998
Q ss_pred CCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
. +..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 548 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 N-DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 8 8999999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-35 Score=315.28 Aligned_cols=414 Identities=8% Similarity=-0.068 Sum_probs=332.7
Q ss_pred HHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 77 FASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
.+.+ |.+..+...|+.++.+++..|+.++..+.+. |++++|+.+|++|.... |+..++..++.+|...|++++|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQ-QQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHc-cCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHH
Confidence 3455 8888899999999989999999999999999 99999999999999765 88899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------------------ChhHHHHHHHHHHhcCC
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-------------------SLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~ 216 (614)
++|+.+.. .+++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 99998864 3678899999999999999999999999965333 47899999999999999
Q ss_pred hhHHHHHHHHhhhccCCC-hhhHHH--------------------------------------HHHHHHhhCchhHHHHH
Q 038206 217 FDSALKLFRRMQILFEPD-GYTFQS--------------------------------------ITSACAGLATLSLGMWA 257 (614)
Q Consensus 217 ~~~A~~~~~~m~~~~~pd-~~t~~~--------------------------------------ll~a~~~~~~~~~~~~~ 257 (614)
+++|+++|++|.+. .|+ ...+.. ++..+.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMV-DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999875 333 222222 24456678889999999
Q ss_pred HHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc
Q 038206 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334 (614)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 334 (614)
++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|+.++|.++|+++ ...
T Consensus 295 ~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 368 (597)
T 2xpi_A 295 LSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL-VDR 368 (597)
T ss_dssp HHTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH-HHH
T ss_pred HHHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hhh
Confidence 8887653 5789999999999999999999999999886 347789999999999999999999999999 532
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 038206 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWR 412 (614)
Q Consensus 335 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~ 412 (614)
.+.+..++..+...|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ... ++..+|+
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3446788999999999999999999999999762 2346889999999999999999999999987 333 4789999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCccCC-CccEEEEC
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK----GVTKEP-GCSSIEID 487 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~~-~~~~~~~~ 487 (614)
.+..+| .+.|++++|.++|+++.+..|. ++.+|..++.+|.+.|++++|.++|+++.+. +..|+. ...|.
T Consensus 446 ~l~~~~-~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~--- 520 (597)
T 2xpi_A 446 FLGMQH-MQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA--- 520 (597)
T ss_dssp HHHHHH-HHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH---
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH---
Confidence 999999 9999999999999999999998 8999999999999999999999999999775 444431 11111
Q ss_pred CEEEEEEeCCCCCCChHHHHHHHHHHHH
Q 038206 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDE 515 (614)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (614)
. +...+..+++.+++.+.++++.+
T Consensus 521 ~----l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 521 N----LGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp H----HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 11122346788888776555444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5e-28 Score=252.44 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 195 (614)
..+..+.+++.+.+........++.+|++|++.|++++|.++|++|.+.|+.||..+||+||++|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777652223467888899999999999999999999999999999999999888877653221
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc
Q 038206 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274 (614)
Q Consensus 196 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (614)
.+.+..++|.++|++|... +.||..||+++|.+|++.|+++.|.++++.|.+. |+.||..
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ 141 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---GIQPRLR 141 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCccc
Confidence 2234456777778887776 6666666666666666666666666666666666 7777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
+||+||.+|++.|++++|.++|++|. .||..||++||.+|++.|+.++|.++|++| ++.|..|+..||+.++..|
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHH
Confidence 77777777777777777777777765 467777777777777777777777777777 7777777777777777766
Q ss_pred hc
Q 038206 351 NH 352 (614)
Q Consensus 351 ~~ 352 (614)
+.
T Consensus 221 ~s 222 (501)
T 4g26_A 221 KS 222 (501)
T ss_dssp HS
T ss_pred hc
Confidence 54
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.3e-27 Score=244.69 Aligned_cols=183 Identities=11% Similarity=0.111 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC---------cHHHHHHHHHHHHhCCCCc
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA---------FSQGKQAHAHIFKRGLVSD 169 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~ 169 (614)
..++.+|.+|++. |++++|+++|++|.+.|+. ||..||++||.+|+..+. ++.|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 4578888888888 8999999999999888888 899999999988876654 5778888999988898999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHH
Q 038206 170 VYINNSLIHFYASCGHLDLANKVFDNM----LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSA 244 (614)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a 244 (614)
..+||+||++|++.|++++|.++|++| ..||..+||+||.+|++.|++++|.++|++|.+. +.||..||+++|.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999888888 4568888999999998888888999999888888 88888888888888
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
|++.|++++|.++++.|.+. |..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~---g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL---VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888 8888888888888887754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.7e-23 Score=213.83 Aligned_cols=363 Identities=12% Similarity=0.087 Sum_probs=272.2
Q ss_pred CChhHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIEN--PN-SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
|++++|.+.|.++.+ |+ ...+..+...+.+. |++++|...++...+.. + .+..+|..+..++...|++++|...
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~a~~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-C-CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888877643 43 34455555666677 88888888888877765 2 4566788888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd 234 (614)
++.+++.. +.+...+..+..+|.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++....+.+
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 88887764 3345567888888888888888888887763 23 34567777778888888888888888887654445
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSII 311 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li 311 (614)
..++..+...+...|+++.|...++.+.+. .+.+...+..+...+...|++++|...|++.. ..+..+|..+.
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 677777888888888888888888888775 23345677778888888888888888887654 23577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 312 LGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
..|.+.|++++|++.|+++ ... .| +..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|
T Consensus 245 ~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRA-IEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHH-Hhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcC
Confidence 8888888888888888887 442 33 3456777778888888888888888888753 3456778888888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 391 NIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
++++|.+.++++ ...| +..+|..+...+ ...|++++|...++++++..|. +...|..+...+.+.|
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 888888888876 3444 466777888877 8888888888888888888877 7777777777776655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6e-23 Score=209.69 Aligned_cols=351 Identities=12% Similarity=0.080 Sum_probs=302.3
Q ss_pred HHHHcCCCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 038206 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184 (614)
Q Consensus 106 ~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (614)
..+.+. |++++|++.++++.+.. |+. ..+..+...+...|++++|...++..++.. +.+..++..+...|.+.|
T Consensus 7 ~~~~~~-g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQA-GDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHC-CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345566 99999999999998876 554 455556667788999999999999998875 557889999999999999
Q ss_pred CHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 185 HLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 185 ~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
++++|...|+++. .| +..+|..+..++.+.|++++|++.|+++....+.+...+..+...+...|++++|...+..+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999873 34 55689999999999999999999999987653334556677778888999999999999999
Q ss_pred HHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 262 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
.+. .+.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++. .. ..|
T Consensus 162 l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~--~~p 234 (388)
T 1w3b_A 162 IET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LS--LSP 234 (388)
T ss_dssp HHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HH--HCT
T ss_pred HHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--hCc
Confidence 986 34457789999999999999999999999876 336778999999999999999999999987 44 345
Q ss_pred c-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 038206 339 N-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLL 415 (614)
Q Consensus 339 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll 415 (614)
+ ..++..+..++...|++++|.+.|+.+.+. -+.+...|..+...|.+.|++++|.+.|+++ .. .++..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 4 578888999999999999999999999762 2335778999999999999999999999987 22 35788999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+ ...|++++|...++++.+..|. +..++..+..+|.+.|++++|...++++.+
T Consensus 313 ~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 313 NIK-REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHH-HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999 9999999999999999999888 889999999999999999999999999876
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.2e-20 Score=196.67 Aligned_cols=390 Identities=8% Similarity=-0.045 Sum_probs=309.0
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
..+-.+...|.+ |++++|...|+++.. ||...|..+...+.+. |++++|+..|+++.+.+ + .+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELK-P-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-S-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC-h-HHHHHHHHHHHHH
Confidence 345555666667 999999999998864 8999999999999999 99999999999999886 2 3456888899999
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh-------------------------------
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD------------------------------- 194 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~------------------------------- 194 (614)
...|++++|...++.+.+.+. ++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998763 344444445544444332222222221
Q ss_pred -------hcC---------CC-ChhHHHHHHHHHHh---cCChhHHHHHHHHhhh-----c-c--------CCChhhHHH
Q 038206 195 -------NML---------ER-SLVSWNVMIDAFVQ---FGEFDSALKLFRRMQI-----L-F--------EPDGYTFQS 240 (614)
Q Consensus 195 -------~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~-~--------~pd~~t~~~ 240 (614)
... .+ +...|......+.. .|++++|+..|+++.. . . +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 110 01 13344444454554 8999999999999987 2 1 223456777
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc
Q 038206 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALH 317 (614)
Q Consensus 241 ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 317 (614)
+...+...|+++.|...+..+.+. .. +..++..+...|...|++++|...|+++. ..+..+|..+...|...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIEL---FP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---Cc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 888899999999999999999987 32 27788999999999999999999998765 34678899999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038206 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (614)
|++++|+..|++. .... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+
T Consensus 318 ~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 318 QNYDQAGKDFDKA-KELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TCTTHHHHHHHHH-HHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHH-HHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998 4432 224567888888999999999999999999763 23356788899999999999999999
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHH
Q 038206 398 LVSNM----PMKPD----AVIWRSLLDACCKK---HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 398 ~~~~m----~~~p~----~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
.++++ +..|+ ..+|..+...+ .. .|+++.|...++++.+..|. +..++..+..+|.+.|++++|...
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLL-TRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHH-HTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99887 22233 44888888888 88 99999999999999999998 889999999999999999999999
Q ss_pred HHHHHhC
Q 038206 467 RKLMTDK 473 (614)
Q Consensus 467 ~~~m~~~ 473 (614)
+++..+.
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.2e-19 Score=188.84 Aligned_cols=298 Identities=8% Similarity=0.022 Sum_probs=177.1
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
++..|..+...+.+. |++++|+.+|+++.+.. + .+..++..+..++...|++++|...++.+++.+ +.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-P-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 345566666666666 77777777777666654 2 345566666666666677777777777666654 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHH------------HHHhcCChhHHHHHHHHhhhccCCChhhH
Q 038206 177 IHFYASCGHLDLANKVFDNMLER---SL---VSWNVMID------------AFVQFGEFDSALKLFRRMQILFEPDGYTF 238 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~~---~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~pd~~t~ 238 (614)
..+|.+.|++++|...|+++.+. +. ..|..++. .+.+.|++++|+..|+++....+.+..++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 67777777777777777666332 12 44444433 36667777777777776665444455555
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHH-----
Q 038206 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSI----- 310 (614)
Q Consensus 239 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~l----- 310 (614)
..+..++...|+++.|...+..+.+. .+.+..++..+...|.+.|++++|...|+++. .| +...|..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 55666666666666666666665553 22345566666666666666666666666553 22 33333333
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHhhhcCCCcc-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 038206 311 -------ILGFALHGRAEAALKYFDRLVVEESFSPN-----SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378 (614)
Q Consensus 311 -------i~~~~~~g~~~~A~~l~~~m~~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 378 (614)
...+...|++++|+..|+++ .. ..|+ ...+..+..++.+.|++++|...++.+.+. .+.+...
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~ 331 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESV-MK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-HH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH
Confidence 55666666666776666666 33 2233 234555566666666666666666666542 2234566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKPD 407 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 407 (614)
|..+..+|.+.|++++|.+.|+++ ...|+
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 666666666666666666666665 44443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=6.5e-20 Score=190.94 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
.+...+.+..... + .+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS-M-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555443 2 456678888899999999999999999999875 457888999999999999999999999987
Q ss_pred CC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCCh---hhHHHH------------HHHHHhhCchhHHHHHH
Q 038206 197 LE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG---YTFQSI------------TSACAGLATLSLGMWAH 258 (614)
Q Consensus 197 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~---~t~~~l------------l~a~~~~~~~~~~~~~~ 258 (614)
.+ .+..+|..+...|.+.|++++|...|+++....+.+. ..+..+ ...+...|+++.|...+
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33 3577899999999999999999999999987533333 455555 33488999999999999
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
..+.+. .+.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++ ..
T Consensus 167 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 239 (450)
T 2y4t_A 167 DKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC-LK-- 239 (450)
T ss_dssp HHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--
T ss_pred HHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--
Confidence 999986 34567889999999999999999999999886 457899999999999999999999999998 44
Q ss_pred CCccHHH-HHHH------------HHHHhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHH
Q 038206 336 FSPNSIT-FVGV------------LSACNHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVS 400 (614)
Q Consensus 336 ~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 400 (614)
..|+... +..+ ..+|.+.|++++|..+|+.+.+...-.|. ..++..+..++.+.|++++|.+.++
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455433 3333 67889999999999999999764221111 4578899999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 401 NM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 401 ~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
++ ...| +..+|..+..+| ...|++++|...++++++..|. +...+..+..+
T Consensus 320 ~a~~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 372 (450)
T 2y4t_A 320 EVLQMEPDNVNALKDRAEAY-LIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKA 372 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 87 3345 688999999999 9999999999999999999999 88888888733
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-19 Score=191.94 Aligned_cols=389 Identities=11% Similarity=-0.021 Sum_probs=298.0
Q ss_pred CcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHH
Q 038206 45 SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIV 120 (614)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~ 120 (614)
....+...+..+++.. |+ + .++..+...|.+ |++++|...|+++.+ | +..+|..+...+.+. |++++|+.
T Consensus 21 ~~~~A~~~~~~al~~~---p~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~ 94 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK---ED-P-VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL-GKFADAMF 94 (514)
T ss_dssp CHHHHHHHHHHHHHHC---CC-H-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---cc-H-HHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 3334467777777765 46 7 889999999999 999999999998754 3 567899999999999 99999999
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh-----------------------------------C
Q 038206 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-----------------------------------G 165 (614)
Q Consensus 121 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------------------g 165 (614)
.|+++...+ + ++......++..+........+.+.+..+... .
T Consensus 95 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 95 DLSVLSLNG-D-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHSS-S-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHhcC-C-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 999999887 2 35555555555443322222222222111100 0
Q ss_pred C---------CCchhHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-ChhHHHHHHHHHHhcCC
Q 038206 166 L---------VSDVYINNSLIHFYAS---CGHLDLANKVFDNMLE----------------R-SLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 166 ~---------~~~~~~~~~li~~~~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~ 216 (614)
. +.+...+..+...+.. .|++++|..+|+++.+ + +..+|..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 0 1113334444444443 8999999999988744 1 34578889999999999
Q ss_pred hhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHH
Q 038206 217 FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296 (614)
Q Consensus 217 ~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 296 (614)
+++|+..|+++... .|+..++..+..++...|+++.|...+..+.+. .+.+..++..+...|.+.|++++|...|
T Consensus 253 ~~~A~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIEL-FPRVNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhh-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998876 344788888899999999999999999999874 3446778999999999999999999999
Q ss_pred hcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 297 ESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 297 ~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
++.. ..+..+|..+...|...|++++|+..|+++ ... .+.+..++..+...+...|++++|...++.+.+...-.
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA-KRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-HHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 8764 346788999999999999999999999998 442 12245678888889999999999999999987643333
Q ss_pred CC----hhHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 374 PV----LEHYGCLVDLLAR---AGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 374 p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
++ ...+..+...|.+ .|++++|.+.+++. ...| +..+|..+...+ ...|++++|...++++.+..|. +.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~-~~ 483 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK-LQQEDIDEAITLFEESADLART-ME 483 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSS-HH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhccc-cH
Confidence 33 4488899999999 99999999999887 2334 577888888888 9999999999999999999988 66
Q ss_pred hhHHHH
Q 038206 445 GVYVLL 450 (614)
Q Consensus 445 ~~~~~l 450 (614)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=4.1e-18 Score=181.59 Aligned_cols=385 Identities=8% Similarity=-0.001 Sum_probs=282.1
Q ss_pred HHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 70 IYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 70 ~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
.+..+...|.+ |++++|...|+++.. .++..|..+...+.+. |++++|++.|+++.+.+ + .+..++..+..++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIK-P-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-C-chHHHHHHHHHHH
Confidence 44555666666 888888888887654 3667788888888888 88888888888888876 2 3556777778888
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------------------------
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-------------------------- 199 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------------- 199 (614)
...|++++|...++ ... ..|+. .+..+..+...+....|...++.+...
T Consensus 104 ~~~g~~~~A~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLS--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHh--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 88888888888885 332 22221 122233444445556666666655331
Q ss_pred -----------Chh---HHHHHHHHHHh--------cCChhHHHHHHHHhhhccCCCh-------hhHHHHHHHHHhhCc
Q 038206 200 -----------SLV---SWNVMIDAFVQ--------FGEFDSALKLFRRMQILFEPDG-------YTFQSITSACAGLAT 250 (614)
Q Consensus 200 -----------~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~pd~-------~t~~~ll~a~~~~~~ 250 (614)
+.. .+..+...+.. .|++++|+.+|+++....+.+. .++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 110 22222222221 2478899999998876533332 245566677788899
Q ss_pred hhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038206 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYF 327 (614)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (614)
++.+...+..+.+. .|+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|
T Consensus 259 ~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 259 LLDAQVLLQESINL-----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHHHH-----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999986 3447788889999999999999999999775 346789999999999999999999999
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 038206 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM----P 403 (614)
Q Consensus 328 ~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 403 (614)
++. .... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ +
T Consensus 334 ~~a-~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 334 QKA-QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHH-HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 998 4432 223467888888999999999999999999763 3445778899999999999999999999886 1
Q ss_pred CC----CCHHHHHHHHHHHHHhc----------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 404 MK----PDAVIWRSLLDACCKKH----------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 404 ~~----p~~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.. .....+..+...+ ... |++++|...++++.+..|. +...+..+..+|.+.|++++|.+.+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATIL-ARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHH-HHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH-HHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 1222344444555 666 9999999999999999998 889999999999999999999999999
Q ss_pred HHhC
Q 038206 470 MTDK 473 (614)
Q Consensus 470 m~~~ 473 (614)
..+.
T Consensus 488 al~~ 491 (537)
T 3fp2_A 488 SAIL 491 (537)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 12
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.7e-18 Score=170.83 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=136.9
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 160 (614)
|++++|.+++++++.|+ +|+.+..++.+. |++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~-g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHc-CCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999999999997664 899999999999 9999999999642 6778999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHH
Q 038206 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240 (614)
Q Consensus 161 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ 240 (614)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 7774 45678899999999999999999988864 77789999999999999999999999987 37899
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038206 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320 (614)
Q Consensus 241 ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 320 (614)
+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA---------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA---------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH---------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHc---------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 999999999999999888766 267899999999999999999988887765 4444455688999999999
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCHHH
Q 038206 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP------VLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 394 (614)
++|+.+++.......-.-...|...++.+-.+.+++.+..+.|. ++-+++| +...|.-++-.|..-++++.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999998762222222223444455555555666666666664 3235555 46678899999999999999
Q ss_pred HHHHHHhC
Q 038206 395 ALHLVSNM 402 (614)
Q Consensus 395 A~~~~~~m 402 (614)
|...+-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 98766554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=2.4e-16 Score=158.16 Aligned_cols=313 Identities=10% Similarity=0.057 Sum_probs=203.0
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
|+..|..+...+... |++++|+..|+++.+.. + .+..++..+...+...|++++|...++.+++.. +.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-P-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-c-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 345667777788888 88888888888888775 2 345677777778888888888888888888764 3355677778
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHH------------HHHHHhcCChhHHHHHHHHhhhccCCChhhH
Q 038206 177 IHFYASCGHLDLANKVFDNMLERS------LVSWNVM------------IDAFVQFGEFDSALKLFRRMQILFEPDGYTF 238 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~ 238 (614)
..+|.+.|++++|...|+...+.+ ...|..+ ...+...|++++|++.|+++.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---------- 147 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL---------- 147 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------
Confidence 888888888888888887774322 2233333 344445555555555555443
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 038206 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFA 315 (614)
Q Consensus 239 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 315 (614)
+. .+.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|.
T Consensus 148 ------------------------~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 148 ------------------------EV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp ------------------------HH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred ------------------------Hh----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 32 22344556666666777777777777776554 235666777777777
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccH-HHH------------HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh--hHHH
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNS-ITF------------VGVLSACNHRGMVSEGRDYFDVMINEYNITPVL--EHYG 380 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~-~t~------------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~ 380 (614)
..|++++|...|++. ... .|+. ..+ ..+...+.+.|++++|...++.+.+...-.+.. ..+.
T Consensus 200 ~~~~~~~A~~~~~~a-~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 200 QLGDHELSLSEVREC-LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276 (359)
T ss_dssp HHTCHHHHHHHHHHH-HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH-Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 777777777777766 331 2222 111 122445677788888888887776532111111 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
.+...|.+.|++++|.+.+++. ...| +..+|..+...+ ...|++++|...++++.+..|. +...+..+..++..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY-LIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 5667777888888888877766 2234 566777777777 7778888888888888888777 66666666555443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=1.3e-16 Score=169.93 Aligned_cols=382 Identities=10% Similarity=0.027 Sum_probs=282.4
Q ss_pred CcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHH
Q 038206 45 SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIV 120 (614)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~ 120 (614)
....+...+..+++.. |.+ + ..+..+...|.+ |++++|.+.|++... .+...|..+...+... |++++|+.
T Consensus 40 ~~~~A~~~~~~al~~~--p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~ 114 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD--PNE-P-VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-GNFTDAMF 114 (537)
T ss_dssp CCC-CHHHHHHHHHHC--TTC-H-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred cHHHHHHHHHHHHhhC--CCC-c-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHH
Confidence 3344477778877765 356 7 889999999999 999999999998754 4677888899999999 99999999
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC------CCCchh-----------------------
Q 038206 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG------LVSDVY----------------------- 171 (614)
Q Consensus 121 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~----------------------- 171 (614)
.|+.+ ... |+.. ...+..+...+....+...+..+.+.. ..|+..
T Consensus 115 ~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 115 DLSVL-SLN---GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHH-hcC---CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99744 322 3322 112233334444566777777664421 111111
Q ss_pred -------HHHHHHHHHHhc--------CCHHHHHHHHhhcCCC--C--------hhHHHHHHHHHHhcCChhHHHHHHHH
Q 038206 172 -------INNSLIHFYASC--------GHLDLANKVFDNMLER--S--------LVSWNVMIDAFVQFGEFDSALKLFRR 226 (614)
Q Consensus 172 -------~~~~li~~~~~~--------g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (614)
....+...+... |++++|..+|+++.+. + ..+|..+...+...|++++|+..|++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 233333333222 4789999999988443 2 22577777889999999999999999
Q ss_pred hhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 038206 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRD 303 (614)
Q Consensus 227 m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~ 303 (614)
.... .|+..++..+...+...|+++.|...+..+.+. .+.+..++..+...|.+.|++++|...|++.. ..+
T Consensus 269 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 269 SINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHH-CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhc-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 9875 566788888999999999999999999999986 34467789999999999999999999999875 346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP----VLEHY 379 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~ 379 (614)
...|..+...|...|++++|++.|+++ .... +.+...+..+...+...|++++|...|+.+.+...-.+ ....+
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNET-KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 788999999999999999999999998 4432 23346778888899999999999999999866321111 22334
Q ss_pred HHHHHHHHHc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 380 GCLVDLLARA----------GNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 380 ~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
..+...|.+. |++++|...|++. ...| +..+|..+...+ ...|++++|.+.++++.+..|. +...
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~ 498 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK-LQMEKIDEAIELFEDSAILART-MDEK 498 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC---CHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCC-cHHH
Confidence 5556778888 9999999999987 3334 577888888888 9999999999999999999988 4443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=9.5e-16 Score=153.74 Aligned_cols=305 Identities=10% Similarity=0.009 Sum_probs=231.9
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 038206 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAF 211 (614)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 211 (614)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777888888888888888888765 34567788888888888888888888887632 3566788888888
Q ss_pred HhcCChhHHHHHHHHhhhccCC----ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcC
Q 038206 212 VQFGEFDSALKLFRRMQILFEP----DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~~~p----d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 287 (614)
.+.|++++|+..|++.... .| +...+..+... . ....+..+...+...|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~-----------------~---------~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS-NPSEQEEKEAESQLVKA-----------------D---------EMQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHH-----------------H---------HHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhc-CCcccChHHHHHHHHHH-----------------H---------HHHHHHHHHHHHHHcc
Confidence 8888888888888887653 33 11111111110 0 0112334567889999
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 038206 288 SLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364 (614)
Q Consensus 288 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 364 (614)
++++|...|+++. ..+...|..+...|...|++++|+..+++. ... .+.+..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKL-KSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999875 347788999999999999999999999998 443 23455778888889999999999999999
Q ss_pred HHHHhcCCCCChhHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHhcCchH
Q 038206 365 VMINEYNITPVLEHYG------------CLVDLLARAGNIDEALHLVSNM-PMKPD-A----VIWRSLLDACCKKHASVV 426 (614)
Q Consensus 365 ~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~ 426 (614)
...+.. +.+...+. .+...+.+.|++++|.+.+++. ...|+ . ..|..+...+ ...|+++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF-SKDEKPV 289 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-HHTTCHH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-HHccCHH
Confidence 997632 22333332 2366789999999999999987 33344 2 2344566677 8899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.|...++++.+..|. ++.++..+..+|.+.|++++|...+++..+.
T Consensus 290 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 290 EAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999998 8999999999999999999999999998764
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.6e-15 Score=150.36 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=144.8
Q ss_pred CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 038206 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMID 209 (614)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 209 (614)
.+...+......+...|++++|.++++.+.+.. +.+...+..++..+.+.|++++|..+|+++.+ .+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344455555556666666666666666666554 22344455555556666666666666665521 24455666666
Q ss_pred HHHhcC-ChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 210 AFVQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 210 ~~~~~g-~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
.+...| ++++|...|++.....+.+ ...+..+...|...|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTY--------------------------------------GPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTC--------------------------------------THHHHHHHHHHHHHTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCcc--------------------------------------HHHHHHHHHHHHHccC
Confidence 666666 6666666666655432222 3344444445555555
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 038206 289 LDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365 (614)
Q Consensus 289 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 365 (614)
+++|...|++.. ..+...|..+...|...|++++|.+.+++. ... .+.+...+..+...+...|++++|...++.
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA-LSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 555555444433 112344444555555555555555555544 221 112234444444555555555555555555
Q ss_pred HHHhcC-------CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 366 MINEYN-------ITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 366 ~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
..+... .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+ ...|++++|.+.++++.
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH-SLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH-HHHTCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH-HHhccHHHHHHHHHHHH
Confidence 443210 0223445555666666666666666655554 1122 344555555555 55666666666666666
Q ss_pred HhcCCCCchhHHHHHHHH
Q 038206 437 ESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~ 454 (614)
+..|. +...+..+..++
T Consensus 298 ~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp TTCSC-CHHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHH
Confidence 66655 555555555555
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.9e-15 Score=145.28 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=219.3
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHH
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (614)
.+...+..+...+... |++++|+++|+++.+.. + .+...+..++..+...|++++|..++..+.+.. +.+..++..
T Consensus 20 ~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKD-P-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-C-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4666778888899999 99999999999999887 2 355667778888899999999999999999875 446778899
Q ss_pred HHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCch
Q 038206 176 LIHFYASCG-HLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251 (614)
Q Consensus 176 li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~ 251 (614)
+...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|++.....+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------- 156 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK------------------- 156 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-------------------
Confidence 999999999 99999999998743 3567899999999999999999999998875311
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
.+...+..+...|...|++++|...|++.. ..+..+|..+...|...|++++|...++
T Consensus 157 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 157 -------------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp -------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 223445556666777777777777776554 2356777778888888888888888887
Q ss_pred HHhhhcC--------CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038206 329 RLVVEES--------FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400 (614)
Q Consensus 329 ~m~~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 400 (614)
+. .... ...+..++..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.|+
T Consensus 218 ~a-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 218 DA-LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HH-HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HH-HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 3311 1233467788888888999999999999988763 23367788889999999999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHhcCch
Q 038206 401 NM-PMKP-DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 401 ~m-~~~p-~~~~~~~ll~~~~~~~~~~ 425 (614)
+. ...| +...+..+..++....|+.
T Consensus 295 ~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 295 TALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHccCCCchHHHHHHHHHHHHHhCch
Confidence 87 5556 5566666666552344543
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.5e-14 Score=152.05 Aligned_cols=391 Identities=11% Similarity=0.059 Sum_probs=282.9
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH
Q 038206 64 QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~ 139 (614)
.+ . .+|..++.. .+ |+++.|+.+|+++.. | +...|...+..+.+. |++++|..+|+++.... |+...|.
T Consensus 11 ~~-~-~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~~---p~~~lw~ 83 (530)
T 2ooe_A 11 YD-L-DAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKV---LHIDLWK 83 (530)
T ss_dssp TC-H-HHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTC---CCHHHHH
T ss_pred CC-H-HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcC---CChHHHH
Confidence 56 6 889999985 55 999999999999865 4 556799999999999 99999999999999876 7766676
Q ss_pred HHHHHH-HccCCcHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh-
Q 038206 140 FALKAC-AYLFAFSQGKQ----AHAHIFKR-GLVS-DVYINNSLIHFYAS---------CGHLDLANKVFDNMLE-RSL- 201 (614)
Q Consensus 140 ~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~f~~m~~-~~~- 201 (614)
..+... ...|+.+.|++ +|+..++. |..| +..+|...+....+ .|+++.|..+|++..+ |+.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 666533 34577777665 77766653 5544 45678888877665 7889999999998754 221
Q ss_pred --hHHHHHHHHH-------------HhcCChhHHHHHHHHhh------hc----cCCCh--------hhHHHHHHHHHhh
Q 038206 202 --VSWNVMIDAF-------------VQFGEFDSALKLFRRMQ------IL----FEPDG--------YTFQSITSACAGL 248 (614)
Q Consensus 202 --~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~----~~pd~--------~t~~~ll~a~~~~ 248 (614)
..|....... .+.+++.+|..++.+.. .. ++|+. ..|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2343322210 12456777877777632 11 24431 2333333322221
Q ss_pred ----Cch----hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC---C-
Q 038206 249 ----ATL----SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK-------CGSLD-------IARQVFESMPK---R- 302 (614)
Q Consensus 249 ----~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~m~~---~- 302 (614)
++. ..+..+++..++. .+.+..+|..+...+.+ .|+++ +|..+|++..+ |
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred CccCCcchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 122 2556678877775 34467788888888876 69987 89999987653 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHY 379 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 379 (614)
+...|..++..+.+.|+.++|..+|++. .. +.|+. ..|......+.+.|++++|..+|+...+. .| +...|
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~ 393 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRL-LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 393 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH-hC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHH
Confidence 6889999999999999999999999998 54 45653 46888888888899999999999999752 33 33333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch----hHHHHHH
Q 038206 380 GCLVDL-LARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG----VYVLLSR 452 (614)
Q Consensus 380 ~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~ 452 (614)
.....+ +...|+.++|.++|++. ...| +...|..++... ...|+.+.|..+|+++++..+. ++. .|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~-~~~g~~~~Ar~~~~~al~~~~~-~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL-SHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHSCCS-CGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH-HhCCCHhhHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 332222 34689999999999976 3334 578999999988 9999999999999999998765 333 6777888
Q ss_pred HHhhcCChhhHHHHHHHHHhC
Q 038206 453 VYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 453 ~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.....|+.+.+.++.+++.+.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999888653
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=1.8e-15 Score=152.55 Aligned_cols=278 Identities=12% Similarity=0.001 Sum_probs=192.8
Q ss_pred cCCHHHHHH-HHhhcCC--C-----ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHH
Q 038206 183 CGHLDLANK-VFDNMLE--R-----SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254 (614)
Q Consensus 183 ~g~~~~A~~-~f~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~ 254 (614)
.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++....+.+..++..+..++...|+++.|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555655 5554311 1 2344556666666666666666666666554444555566666666666666666
Q ss_pred HHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHH---------------HHHHHHh
Q 038206 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNS---------------IILGFAL 316 (614)
Q Consensus 255 ~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~~~ 316 (614)
...+..+.+. .+.+..++..+...|.+.|++++|...|+++.+ | +...+.. .+..+..
T Consensus 118 ~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 6666666654 233455666667777777777777777765431 1 1111111 2333348
Q ss_pred cCCHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 317 HGRAEAALKYFDRLVVEE-SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
.|++++|+..|+++ ... .-.++..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAA-VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHH-HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHH-HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999998 442 22224688888999999999999999999998763 234678899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHhhcCChhh
Q 038206 396 LHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-----------SGVYVLLSRVYASARRWND 462 (614)
Q Consensus 396 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 462 (614)
.+.|+++ ...| +..+|..+...+ ...|++++|...++++++..|. + ..+|..+..+|...|++++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISC-INLGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999987 3334 577888888888 9999999999999999998877 4 6789999999999999999
Q ss_pred HHHHHHH
Q 038206 463 VGLVRKL 469 (614)
Q Consensus 463 a~~~~~~ 469 (614)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998763
No 20
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=177.86 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=116.7
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.|||+.|+.++|.++|++| ...|+.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCcHH
Confidence 44456699999999999999999999997753 689999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 342 TFVGVLSACNHRGM-VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 342 t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
||+++|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999997 5789999999987 499999999999999888876555555554444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=3.4e-15 Score=150.63 Aligned_cols=117 Identities=8% Similarity=-0.111 Sum_probs=74.4
Q ss_pred CCchHHHH-HHHHHHHcCCCCC--CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 038206 113 DAKPQAIV-LFQRMIEQGNVLP--DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189 (614)
Q Consensus 113 ~~~~~A~~-~~~~m~~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 189 (614)
|++++|++ .|++........| +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 66667766 6665443321111 34556667777777777777777777777654 34566677777777777888887
Q ss_pred HHHHhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 190 NKVFDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 190 ~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
...|++. ...+..+|..+...|...|++++|+..|+++...
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777765 2235667777888888888888888888877654
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=172.52 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVV---EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
..|||+||.+||+.|+.++|.++|.+| . ..|+.||.+||++||.+|++.|++++|.++|++|.+ .|+.||..+||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM-~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVH-HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-HHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHH
Confidence 469999999999999999999999887 4 458999999999999999999999999999999976 59999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC------chhHHHH
Q 038206 381 CLVDLLARAGNI-DEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC------SGVYVLL 450 (614)
Q Consensus 381 ~li~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 450 (614)
+||+++++.|+. ++|.++|++| ++.||..+|++++.++ .+. ..++..+++ .-+..|+ ..+...|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~-eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE-DRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH-HHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh-hHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999984 7899999999 8999999999999887 433 333333333 1122222 3445678
Q ss_pred HHHHhhcC
Q 038206 451 SRVYASAR 458 (614)
Q Consensus 451 ~~~~~~~g 458 (614)
.+.|++.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 88888766
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=1.2e-16 Score=159.05 Aligned_cols=250 Identities=12% Similarity=0.086 Sum_probs=109.6
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+...
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6788888888888886554 8888888888888888888888653 57778888888888888888888877776
Q ss_pred HHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 262 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
.+. .+++.+.+.|+.+|.|+|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 88 rk~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 88 RKK-----ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------T
T ss_pred HHh-----CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 653 34577888899999999999998888763 77789999999999999999999999876 3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 421 (614)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..| .+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Y-ek 219 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYY-QD 219 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHH-HH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHH-HH
Confidence 6888899999999999999888876 26788899999999999999997766665544544 44677788 88
Q ss_pred cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc--CChhhHHHHH
Q 038206 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA--RRWNDVGLVR 467 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 467 (614)
.|.+++|..+++..+..++. ....|.-|..+|++- |+..+..+.|
T Consensus 220 ~G~~eEai~lLe~aL~le~a-h~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999999998888866 778888877777654 4455555544
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=1.8e-14 Score=140.03 Aligned_cols=242 Identities=10% Similarity=0.051 Sum_probs=169.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHh
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCK 285 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~ 285 (614)
+..+|...|++++|+..++.. -+|+..++..+...+...++.+.+.+.++.+... +..| +...+..+...|..
T Consensus 40 l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~---~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR---SVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS---CCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHH
Confidence 344444444444444333221 2233334444444444444444444444444433 4334 45566777889999
Q ss_pred cCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH---HHHHHHHhccCCHHHHHHH
Q 038206 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF---VGVLSACNHRGMVSEGRDY 362 (614)
Q Consensus 286 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~ 362 (614)
.|++++|.+.|++ ..+...+..+...|.+.|+.++|.+.|+++ ... .|+.... ...+..+...|++++|..+
T Consensus 114 ~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~-~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM-QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999998 568889999999999999999999999999 554 4664322 1233444566999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhc
Q 038206 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVL-SEEVAKQVIESE 439 (614)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~-a~~~~~~~~~~~ 439 (614)
|+.+.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+|..++..+ ...|+.++ +.++++++++..
T Consensus 189 ~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~-~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 189 FQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS-QHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC
Confidence 9999874 4568889999999999999999999999986 4445 677898898888 77888765 689999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
|+ ++.+ .+...+.+.++++..-|
T Consensus 266 P~-~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 266 RS-HPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TT-CHHH----HHHHHHHHHHHHHHHHH
T ss_pred CC-ChHH----HHHHHHHHHHHHHHHHc
Confidence 99 6644 34455666666655433
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=4.2e-15 Score=149.92 Aligned_cols=263 Identities=9% Similarity=-0.042 Sum_probs=194.1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
+...|..+...+.+.|++++|+..|+++....+.+..++..+..++...|+++.|...+..+.+. .+.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHH
Confidence 34456677777777777777777777776554455666777777777777777777777777765 23346677888
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPK--RD-----------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~l 346 (614)
...|.+.|++++|...|+++.+ |+ ...+..+...+...|++++|++.|+++.....-.++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888888888877652 21 2234455778889999999999999983332222257788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+ ...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC-INLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHCCC
Confidence 89999999999999999999763 3446888999999999999999999999887 3345 478888888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGI-----------CSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
+++|...++++++..|.. +...|..+..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999887651 357788999999999999998887654
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=146.89 Aligned_cols=227 Identities=12% Similarity=-0.005 Sum_probs=129.4
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 210 (614)
+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|++.. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777777778888888888888887765 3456777888888888888888888887763 2356778888888
Q ss_pred HHhcCChhHHHHHHHHhhhccCCCh----------hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCC-ccccHHHHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDG----------YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV-TDVLVNNSL 279 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~----------~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l 279 (614)
|.+.|++++|+..|+++....+.+. ..+..+...+...|+++.|...+..+.+. ... .+..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHH
Confidence 8888888888888888765311111 11122234444555555555555555544 111 134455555
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~ 355 (614)
...|.+.|++++|.+.|++.. ..+..+|+.+...|...|++++|+..|++. ... .|+ ..++..+..+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA-LEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc--CCCchHHHHHHHHHHHHCCC
Confidence 555555555555555555443 224445555555555555555555555554 221 222 3444444455555555
Q ss_pred HHHHHHHHHHHH
Q 038206 356 VSEGRDYFDVMI 367 (614)
Q Consensus 356 ~~~a~~~~~~~~ 367 (614)
+++|...|+.+.
T Consensus 297 ~~~A~~~~~~al 308 (365)
T 4eqf_A 297 YREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.7e-12 Score=134.85 Aligned_cols=336 Identities=13% Similarity=0.044 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY----LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----CG 184 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g 184 (614)
+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.+....+.| +...+..|-.+|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 44444444444444432 22233333333433 444444444444444433 23333444444444 44
Q ss_pred CHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh----hCchhHHH
Q 038206 185 HLDLANKVFDNMLER-SLVSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITSACAG----LATLSLGM 255 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~----~~~~~~~~ 255 (614)
+.++|...|+...+. +...+..|...|.. .+++++|++.|++..+. .+...+..+-..+.. .++.+.+.
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 455555554443222 33344444444444 44455555555444332 233333334444433 44555555
Q ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038206 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFAL----HGRAEAALKY 326 (614)
Q Consensus 256 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l 326 (614)
..+....+. + +...+..|..+|.. .++.++|...|++..+ .+...+..+-..|.. .++.++|++.
T Consensus 208 ~~~~~a~~~---~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATS---G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 555554443 3 33456666666665 6778888888876543 355666666666766 7788888888
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---CHHHHHHH
Q 038206 327 FDRLVVEESFSPNSITFVGVLSACNHR-----GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG---NIDEALHL 398 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~ 398 (614)
|++. .+.| +...+..+-..+... ++.++|..+|+...+. + +...+..|..+|.+.| ++++|.+.
T Consensus 282 ~~~a-~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 282 YRKS-AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHH-HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHH-HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 8877 4443 233444455555555 7888888888887652 2 4456667777777756 67888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHH
Q 038206 399 VSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLM 470 (614)
Q Consensus 399 ~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 470 (614)
|++.-...+...+..|-..+ .. .+++++|...+++..+.+ ++..+..|..+|.+ .++.++|...+++.
T Consensus 354 ~~~a~~~~~~~a~~~Lg~~y-~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 354 FRKAAAKGEKAAQFNLGNAL-LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 87762234677777777777 66 678888888888888765 45777788888887 78888888888888
Q ss_pred HhCCC
Q 038206 471 TDKGV 475 (614)
Q Consensus 471 ~~~g~ 475 (614)
.+.|.
T Consensus 430 ~~~~~ 434 (490)
T 2xm6_A 430 STNDM 434 (490)
T ss_dssp HHHHC
T ss_pred HHCCC
Confidence 77663
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=8.4e-13 Score=140.22 Aligned_cols=396 Identities=8% Similarity=0.052 Sum_probs=277.2
Q ss_pred ChhhHHHHHHhc--cCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHH
Q 038206 32 NHSSLLSSLTEC--KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIR 106 (614)
Q Consensus 32 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~ 106 (614)
|...+..++... +....++.++..+++. .|.+ . .+|..++..+.+ |+++.|+++|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~-~-~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSS-G-RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTC-H-HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 444565555532 2233346777777664 3356 6 899999999999 999999999999865 78778877775
Q ss_pred HH-HcCCCCchHHHH----HHHHHHHc-CCCCCCcchHHHHHHHHHc---------cCCcHHHHHHHHHHHHhCCCCchh
Q 038206 107 AC-ARSVDAKPQAIV----LFQRMIEQ-GNVLPDKHTFPFALKACAY---------LFAFSQGKQAHAHIFKRGLVSDVY 171 (614)
Q Consensus 107 ~~-~~~~~~~~~A~~----~~~~m~~~-~~~~p~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~ 171 (614)
-. ... |+.++|.+ +|++.... |..+++...|...+..... .|+++.|..+|+..++....+...
T Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETK-GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHT-TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHc-cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 33 345 77777765 77776653 4441344566666665543 688999999999998731111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHhhc------C-------CCC--------hhHHHHHHHHHHhc---
Q 038206 172 INNSLIHFY-------------ASCGHLDLANKVFDNM------L-------ERS--------LVSWNVMIDAFVQF--- 214 (614)
Q Consensus 172 ~~~~li~~~-------------~~~g~~~~A~~~f~~m------~-------~~~--------~~~~~~li~~~~~~--- 214 (614)
.|....... .+.++++.|..++..+ . .|+ ...|...+.-...+
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443333211 1235567777766641 1 112 24666666443332
Q ss_pred -CCh----hHHHHHHHHhhhccCCChhhHHHHHHHHHh-------hCchh-------HHHHHHHHHHHhccCCCCccccH
Q 038206 215 -GEF----DSALKLFRRMQILFEPDGYTFQSITSACAG-------LATLS-------LGMWAHAYILRHCDHSLVTDVLV 275 (614)
Q Consensus 215 -g~~----~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~-------~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~ 275 (614)
++. ++|+.+|++.....+-+...|......+.. .|+++ .+..+++...+. -.+.+...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCcccHHH
Confidence 222 377888988877655567777777777665 68877 888888888862 23445789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHH-
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP--KR-DL-TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSA- 349 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a- 349 (614)
|..++..+.+.|++++|..+|+++. .| +. ..|...+..+.+.|+.++|.++|++. ... .|+ ...|......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A-l~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA-RED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH-Hhc--cCCchHHHHHHHHHH
Confidence 9999999999999999999999875 34 33 58999999999999999999999987 443 333 2333322222
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHhcC
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPD--AVIWRSLLDACCKKHA 423 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~ 423 (614)
+...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+... ..+|
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e-~~~G 477 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIG 477 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH-HHSS
T ss_pred HHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcC
Confidence 335899999999999988743 336788999999999999999999999987 33332 55898888887 8999
Q ss_pred chHHHHHHHHHHHHhcCC
Q 038206 424 SVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~ 441 (614)
+.+.+..+++++.+..|.
T Consensus 478 ~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHCch
Confidence 999999999999988763
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1e-12 Score=138.05 Aligned_cols=365 Identities=8% Similarity=-0.036 Sum_probs=286.3
Q ss_pred CCchHHHHHHHHHHHhc-----CChhHHHHHHhcCCC-CChhhHHHHHHHHHc----CCCCchHHHHHHHHHHHcCCCCC
Q 038206 64 QHKTLLIYSRIIHFASF-----ADLDYAFRVFYQIEN-PNSFTWNTLIRACAR----SVDAKPQAIVLFQRMIEQGNVLP 133 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-----g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~~~~~~~A~~~~~~m~~~~~~~p 133 (614)
.+ + ..+..|-.+|.. ++++.|...|.+..+ .+...+..+-..|.. . +++++|++.|++....|
T Consensus 37 g~-~-~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GE-A-KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVP-QDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TC-H-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT----
T ss_pred CC-H-HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC----
Confidence 34 5 666666666654 789999999987644 467778888888887 7 99999999999998865
Q ss_pred CcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHH
Q 038206 134 DKHTFPFALKACAY----LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----CGHLDLANKVFDNMLE-RSLVSW 204 (614)
Q Consensus 134 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~ 204 (614)
+...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44566677777776 789999999999999876 56778888888887 7899999999988743 467788
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh----hCchhHHHHHHHHHHHhccCCCCccccHH
Q 038206 205 NVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITSACAG----LATLSLGMWAHAYILRHCDHSLVTDVLVN 276 (614)
Q Consensus 205 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (614)
..+...|.+ .+++++|++.|++.... .+...+..+...+.. .++.+.+...+....+. + +...+
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~ 258 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---G---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---T---CHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHH
Confidence 899999988 89999999999988754 455666666666665 78899999999888765 4 34567
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 038206 277 NSLIDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFALH-----GRAEAALKYFDRLVVEESFSPNSITFVGV 346 (614)
Q Consensus 277 ~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~p~~~t~~~l 346 (614)
..|..+|.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++. .+.+ +...+..+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a-~~~~---~~~a~~~l 334 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS-AEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH-HHTT---CHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-HhcC---CHHHHHHH
Confidence 778888888 8999999999998764 4677888888888887 8999999999998 6554 33455555
Q ss_pred HHHHhccC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038206 347 LSACNHRG---MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419 (614)
Q Consensus 347 l~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 419 (614)
-..+...| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|-..+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y- 409 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY- 409 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-
Confidence 55665545 789999999999763 367788889999998 899999999999873234677888888777
Q ss_pred Hh----cCchHHHHHHHHHHHHhcCCC--CchhHHHHHHHHh
Q 038206 420 KK----HASVVLSEEVAKQVIESEGGI--CSGVYVLLSRVYA 455 (614)
Q Consensus 420 ~~----~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 455 (614)
.. .++.++|...|+++.+.++++ +......|..++.
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 76 799999999999999999651 3344444444433
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=1.8e-13 Score=135.23 Aligned_cols=256 Identities=12% Similarity=-0.025 Sum_probs=134.3
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcC
Q 038206 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFG 215 (614)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g 215 (614)
......+...|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 333344444444444444444444432 2233444444445555555555555554431 123445555555555556
Q ss_pred ChhHHHHHHHHhhhccCCChhhHHHH--------------HH-HHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHH
Q 038206 216 EFDSALKLFRRMQILFEPDGYTFQSI--------------TS-ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280 (614)
Q Consensus 216 ~~~~A~~~~~~m~~~~~pd~~t~~~l--------------l~-a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 280 (614)
++++|++.|+++....+.+...+..+ .. .+...|+++.+...+..+.+. .+.+..++..+.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la 179 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPNDAQLHASLG 179 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh----CCCCHHHHHHHH
Confidence 66666655555544311122222111 11 244555666666666666554 223455666666
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 281 DMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
..|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|++.|++. .... +.+..++..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA-LDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 67777777777777666553 234566666666777777777777777665 3321 223455566666666667777
Q ss_pred HHHHHHHHHHHhcCCC----------CChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 358 EGRDYFDVMINEYNIT----------PVLEHYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
+|...++.+.+...-. .+...+..+..+|.+.|+.++|..++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777666665421110 0245566666666666666666666654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=3.9e-14 Score=139.99 Aligned_cols=273 Identities=10% Similarity=-0.010 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh
Q 038206 171 YINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247 (614)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~ 247 (614)
..+..+...+.+.|++++|..+|+++. ..+...|..+...+.+.|++++|...|+++....+.+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344556666677777777777776652 22455666677777777777777777776655433344445555555555
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL--GFALHGRAEAALK 325 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~--~~~~~g~~~~A~~ 325 (614)
.|+++.|...+..+.+. .+.+...+..+.... ++......+.. .+...|++++|.+
T Consensus 102 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS----QPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp TTCHHHHHHHHHHHHHT----STTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh----CCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 55555555555555543 111111111110000 00001111112 2667788889999
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038206 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM 404 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 404 (614)
.++++ .... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.|++. ..
T Consensus 160 ~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 160 LLHAA-LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99887 4432 235577778888888999999999999988763 2345778889999999999999999999886 33
Q ss_pred CC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 405 KP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----------CSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 405 ~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
.| +..+|..+...+ ...|++++|.+.++++.+..|.. +...+..+..+|.+.|++++|..++++.
T Consensus 236 ~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSY-SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34 577888888888 99999999999999999988773 4677889999999999999999988643
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.60 E-value=5.8e-12 Score=139.59 Aligned_cols=369 Identities=12% Similarity=0.096 Sum_probs=233.8
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCC-CCChhhHHH-HHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGS-FNNHSSLLS-SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS 79 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~-~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~ 79 (614)
+.+|...|.+.+ |++++++....+- .-+....-. ++....+. +....-..+.+.+ . +....+...+.
T Consensus 992 vKaf~~aglp~E---aieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~------~d~~eIA~Iai 1060 (1630)
T 1xi4_A 992 VKAFMTADLPNE---LIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-N------YDAPDIANIAI 1060 (1630)
T ss_pred HHHHHhCCCHHH---HHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-h------ccHHHHHHHHH
Confidence 467888899986 6788888874321 001111111 22211111 2233333333332 1 22344555566
Q ss_pred c-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHH
Q 038206 80 F-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158 (614)
Q Consensus 80 ~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 158 (614)
. |.+++|..+|++... .....+.++. .. +++++|.++.++. -+..+|..+.+++...|++++|...|
T Consensus 1061 ~lglyEEAf~IYkKa~~-~~~A~~VLie---~i-~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-NTSAVQVLIE---HI-GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-HHHHHHHHHH---HH-hhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6 888888888888752 2223344443 33 7788888887644 24567788888888888888888887
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 159 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
... .|...|..++..+.+.|++++|.+.+....+ ++....+.++.+|++.+++++. +-|- -.|+..
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel-e~fI-----~~~n~a 1196 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL-EEFI-----NGPNNA 1196 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH-HHHH-----hCCCHH
Confidence 543 4666777788888888888888888865422 3333344588888888877753 3331 145556
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 316 (614)
.+..+-..|...|+++.|..++..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhh
Confidence 6777888888888888888888764 25788888888888888888888776 456777777777777
Q ss_pred cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHc--CCHH
Q 038206 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARA--GNID 393 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--g~~~ 393 (614)
.|++..|...... +..+...+..++..|.+.|.+++|..+++... ++.| ....|+-|..+|++- +++.
T Consensus 1263 ~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 7777777665532 23344445577777778888888888776554 3333 344555566666543 4555
Q ss_pred HHHHHHHhC-CCCC------CHHHHHHHHHHHHHhcCchHHHH
Q 038206 394 EALHLVSNM-PMKP------DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 394 ~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
++.++|..- .+.| +...|.-++--| .+.|+++.|.
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY-~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLY-DKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHH-HhcccHHHHH
Confidence 555555432 3222 455677777777 7777777776
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.1e-12 Score=137.12 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHH-HHHHcCCHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL--EHYGCLVD-LLARAGNIDEA 395 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A 395 (614)
..++|...|++. .... +.+..++..+...+...|++++|...|+...+. ...|.. ..+..+.. .+...|+.++|
T Consensus 315 ~~~~A~~~~~~a-~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 315 LIGHAVAHLKKA-DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HHHHHHHHHHHH-HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred hHHHHHHHHHHH-hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 356788888776 3321 223356777888899999999999999988752 322221 12223332 23467899999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 396 LHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 396 ~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+..|++. .+.|+...+.. ..+.+.+++++.++.+|. ++.+|..|..+|...|++++|.+.+++..+.|
T Consensus 392 i~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9998876 56676543332 234456777888888999 89999999999999999999999999988765
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
-.
T Consensus 461 ~~ 462 (472)
T 4g1t_A 461 SL 462 (472)
T ss_dssp --
T ss_pred CC
Confidence 43
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=3.3e-11 Score=133.72 Aligned_cols=379 Identities=13% Similarity=0.052 Sum_probs=276.6
Q ss_pred ChhhHHHHHHhccCcchHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC-CC-----hhhHHH
Q 038206 32 NHSSLLSSLTECKSMSQLKQIHAQALRTALPQ-QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN-PN-----SFTWNT 103 (614)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~-~~-----~~~~~~ 103 (614)
|...|+.+|......+ +++.++.....++. .+ + .--...+..|.. |.+.+|.+++++..- |+ ...-|.
T Consensus 952 d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~-P-eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 952 DPELWGSVLLESNPYR--RPLIDQVVQTALSETQD-P-EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred CHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccC-H-HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 5566666664432111 45555554444321 23 3 334666777777 899999999888753 22 244556
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 104 li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
++.+..+. +..+..+..++.. .....-+...|...|.+++|.++|+... ......+.++ -..
T Consensus 1028 Li~tAIka--D~~Rv~eyI~kLd--------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i 1089 (1630)
T 1xi4_A 1028 LILTAIKA--DRTRVMEYINRLD--------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHI 1089 (1630)
T ss_pred HHHHHHHh--ChhhHHHHHHHhh--------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHH
Confidence 66666654 3455555554443 1223446677888999999999998852 1222223333 277
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 184 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
|++++|.++.++.. +..+|..+..++.+.|++++|+..|.+. -|...|..++.+|.+.|+++++.+.+....+
T Consensus 1090 ~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999998774 4678999999999999999999999765 4677888899999999999999999998887
Q ss_pred hccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 264 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
. . +++.+.+.++.+|+|.+++++..... ..++...|..+...|...|++++|..+|... ..|
T Consensus 1163 ~---~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny 1224 (1630)
T 1xi4_A 1163 K---A--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 1224 (1630)
T ss_pred h---c--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHH
Confidence 5 3 44445556999999999998655543 4567778888889999999999999999865 378
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcC
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~ 423 (614)
..+..++.+.|++++|.+.++.. .+..+|..+..++...|++..|......+ ..+...+..++..| ...|
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yY-e~~G 1294 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYY-QDRG 1294 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHH-HHcC
Confidence 89999999999999999988766 34578888888888999999998877653 34555666888888 9999
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc--CChhhHHHHHH
Q 038206 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA--RRWNDVGLVRK 468 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 468 (614)
.+++|+.+++..+.+++. +...|.-|...|++- ++..++.+.|.
T Consensus 1295 ~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999988877 777887777777654 45555555554
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=1e-12 Score=127.60 Aligned_cols=245 Identities=9% Similarity=0.059 Sum_probs=196.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhhccCCCh--hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQILFEPDG--YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~~~pd~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 285 (614)
|.-....|++.+|+..+++.... .|+. .....+.+++...|+.+.+...++. .-+|+...+..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcC
Confidence 34456689999999988876433 3332 3456678899999999888864422 345677888999999999
Q ss_pred cCCHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHH
Q 038206 286 CGSLDIARQVFESMP----KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 286 ~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 360 (614)
.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999863 24 566777788999999999999999963 456678888889999999999999
Q ss_pred HHHHHHHHhcCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 038206 361 DYFDVMINEYNITPVLEH---YGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435 (614)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 435 (614)
+.++.+.+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++ ...|++++|+..++++
T Consensus 151 ~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH-MAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 999999764 355321 233445555669999999999988 2235788899999888 9999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhhcCChhh-HHHHHHHHHh
Q 038206 436 IESEGGICSGVYVLLSRVYASARRWND-VGLVRKLMTD 472 (614)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 472 (614)
++..|. ++.++..++..+...|+.++ +.++++++.+
T Consensus 227 l~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 227 LDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999 99999999999999999976 5688888765
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.9e-11 Score=127.67 Aligned_cols=358 Identities=8% Similarity=-0.047 Sum_probs=230.1
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCC-----------C-CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC-----C
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIE-----------N-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-----N 130 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~-----~ 130 (614)
.+||.|-..|.. |++++|++.|++.. . ...++|+.+-..|... |++++|...|++..+.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhcccc
Confidence 789999888888 99999999987642 1 2456899999999999 99999999998876531 1
Q ss_pred CCCC-cchHHHHHHHHHc--cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCCHHHHHHHHhhc---CCCCh
Q 038206 131 VLPD-KHTFPFALKACAY--LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF---YASCGHLDLANKVFDNM---LERSL 201 (614)
Q Consensus 131 ~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~f~~m---~~~~~ 201 (614)
..++ ..++.....++.. .+++++|...|+..++... .++..+..+..+ +...++.++|.+.|++. ...+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1012 2345444444443 4578999999999998752 345555555544 34567777888887765 23355
Q ss_pred hHHHHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHH
Q 038206 202 VSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277 (614)
Q Consensus 202 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (614)
..+..+...+.. .|++++|.+.+++.....+.+...+..+...+...|+.+.+...+..+.+. .+.+..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChHHHHH
Confidence 666666655554 467889999999887665667778888999999999999999999999986 334456677
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 278 SLIDMYCKC-------------------GSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 278 ~li~~y~~~-------------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
.+...|... +..+.|...|++.. ..+..+|..+...|...|++++|++.|++. ....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka-L~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE-FSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH-HHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH-HhcC
Confidence 776666432 23556777776554 335567888999999999999999999988 5543
Q ss_pred CCccHH--HHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHH
Q 038206 336 FSPNSI--TFVGVLS-ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVI 410 (614)
Q Consensus 336 ~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 410 (614)
..|... .+..+.. .....|+.++|...|....+ +.|+........ ..+.++++.. ...| +..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHH
Confidence 333321 2222222 24578999999999998864 455543322222 2233333332 1223 5678
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
|..|-..+ ...|++++|++.|+++++.++. ++.++
T Consensus 433 ~~~LG~~~-~~~g~~~~A~~~y~kALe~~~~-~p~a~ 467 (472)
T 4g1t_A 433 LHVLAFLQ-ELNEKMQQADEDSERGLESGSL-IPSAS 467 (472)
T ss_dssp HHHHHHHH-HHHHHCC---------------------
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-CCcHh
Confidence 88888888 9999999999999999999877 44443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.1e-11 Score=117.62 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=142.6
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R----D----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
.+..++..+...|...|++++|...|++..+ | + ..+|..+...|...|++++|++.|++. .. ..|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~--~~~~~ 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LT--EHRTA 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCCCH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-Hh--cCchh
Confidence 4556667777777777777777777766542 1 1 467778888888888888888888877 44 23442
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 418 (614)
..+...|++++|...++.+.+ ..+.+...+..+...+...|++++|.+.+++. ... .+..+|..+...+
T Consensus 113 -------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 183 (258)
T 3uq3_A 113 -------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183 (258)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 235556778888888888764 22335667788888888899999998888876 223 3577788888888
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
...|++++|...++++++..|. +...|..+..+|.+.|++++|...+++..+.
T Consensus 184 -~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 184 -AKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8889999999999999998888 7888888999999999999999998887653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=7.6e-12 Score=115.80 Aligned_cols=194 Identities=13% Similarity=-0.016 Sum_probs=152.2
Q ss_pred CccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHH
Q 038206 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVG 345 (614)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ 345 (614)
+++...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++. .. ..|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL-VA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCcHHHHHH
Confidence 4567788888999999999999999998765 346788999999999999999999999987 44 3454 466777
Q ss_pred HHHHHhcc-----------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 038206 346 VLSACNHR-----------GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRS 413 (614)
Q Consensus 346 ll~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 413 (614)
+..++... |++++|...++...+. -+-+...+..+...|...|++++|++.|++. ....+...|..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 77788888 9999999999999763 2235778889999999999999999999886 21268888999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
+...+ ...|++++|...++++++..|. +...+..+..++.+.|++++|...+++.
T Consensus 157 la~~~-~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELY-LSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 98888 9999999999999999999999 8999999999999999999999998764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.9e-11 Score=116.02 Aligned_cols=222 Identities=13% Similarity=0.040 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHH
Q 038206 171 YINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSAC 245 (614)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~ 245 (614)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... ..|+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY---------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch----------
Confidence 4455566666666666666666665411 45556666666666666666666666665432 11110
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A 323 (614)
+....++..+...|.+.|++++|...|++.. .|+. ..+...|++++|
T Consensus 76 ------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 76 ------------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHH
Confidence 0013456666777777777777777776654 2332 335556778888
Q ss_pred HHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 324 LKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...++++ .. ..|+ ...+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.|++.
T Consensus 125 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAE-AY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHH-HH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888876 43 2333 355666777778888888888888888653 2345677888888888888888888888776
Q ss_pred -CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 403 -PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 403 -~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
...| +...|..+...+ ...|+++.|...++++.+..
T Consensus 200 l~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQ-IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhC
Confidence 2234 467777777777 88889999999999888877
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=9e-12 Score=119.64 Aligned_cols=215 Identities=9% Similarity=-0.082 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Q 038206 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGF 314 (614)
Q Consensus 238 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 314 (614)
+..+...+...|+++.|...+..+.+. .+.+..++..+...|...|++++|...|++.. ..+..+|..+...|
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 333344444444444444444444443 22345667777777777888888877777665 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.+.|++++|++.|+++ .. ..|+.......+..+...|++++|...+...... .+++...+ .++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a-~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAF-YQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHH
Confidence 8888888888888877 44 3455544444555556678888888888777653 33444444 36667777788888
Q ss_pred HHHHHHhC-CCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 395 ALHLVSNM-PMKPD-----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 395 A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
|.+.+++. ...|+ ..+|..+...+ ...|++++|...++++++..|. +...+ ..++...|++++|.+.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYY-LSLGDLDSATALFKLAVANNVH-NFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCT-TCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCch-hHHHH---HHHHHHHHHHHhhHHHH
Confidence 88888775 32232 46777788888 8889999999999999988776 44433 55677778888877665
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=4.2e-11 Score=114.80 Aligned_cols=242 Identities=12% Similarity=0.026 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~ 248 (614)
+.......|.+.|++++|...|++.. .| +...|..+...|.+.|++++|+..|++.... .++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA----------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH-----------
Confidence 34445566667777777777777652 22 3446777777777777777777777776652 111111
Q ss_pred CchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038206 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 325 (614)
....+..+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|++
T Consensus 73 -----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 73 -----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 01124444444555555555555554433 1233445555555555555555555
Q ss_pred HHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC---HHHHHHHHHh
Q 038206 326 YFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN---IDEALHLVSN 401 (614)
Q Consensus 326 l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~ 401 (614)
.|++. .. ..|+. ..+..+...+...+++++|...|+.+.+. .+.+...+..+...+...|+ +++|...+++
T Consensus 130 ~~~~a-l~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 130 YMEKQ-IR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHGGG-CC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHH-hh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 55544 22 12322 22222221222333555555555555432 11224444445555555554 4444444443
Q ss_pred C----CCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 402 M----PMKPD------AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 402 m----~~~p~------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
. ...|+ ..+|..+...+ ...|+++.|.+.++++++..|. +......+.....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYY-TINRDKVKADAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 3 11122 23556666666 7778888888888888888887 6666655544433
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=9.1e-11 Score=111.06 Aligned_cols=203 Identities=12% Similarity=0.011 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHH
Q 038206 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280 (614)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 280 (614)
...|..+...+...|++++|+..|+++.... +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~la 78 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------------------------------------PSSADAHAALA 78 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------------------------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------------------CChHHHHHHHH
Confidence 4567778888888888888888888876431 22334555666
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCH
Q 038206 281 DMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMV 356 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~ 356 (614)
..|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++ ...+..|+ ...+..+...+...|++
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 79 VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCH
Confidence 66667777777777666553 235667777777788888888888888877 44334443 35666677777888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+ ...|+.+.|.+.+++
T Consensus 158 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 158 AQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA-KVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHccCHHHHHHHHHH
Confidence 8888888887653 2335677778888888888888888888776 3333 556666666666 788888888888888
Q ss_pred HHHhcCCCCchh
Q 038206 435 VIESEGGICSGV 446 (614)
Q Consensus 435 ~~~~~~~~~~~~ 446 (614)
+.+..|. +...
T Consensus 235 ~~~~~p~-~~~~ 245 (252)
T 2ho1_A 235 LKRLYPG-SLEY 245 (252)
T ss_dssp HHHHCTT-SHHH
T ss_pred HHHHCCC-CHHH
Confidence 8888777 4443
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=2.7e-11 Score=116.31 Aligned_cols=211 Identities=9% Similarity=-0.059 Sum_probs=141.5
Q ss_pred CCchHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVL--PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (614)
|++++|+..|+++.+..... .+..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 67778888888887753210 134566677777778888888888888887765 335677778888888888888888
Q ss_pred HHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccC
Q 038206 191 KVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267 (614)
Q Consensus 191 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 267 (614)
+.|++..+ .+..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|+.+.+...+......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 88877632 35677888888888888888888888887654 444444444444556667777777777666654
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-------LTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+++...+ .++..+...++.++|...++...+.+ ..+|..+...|...|++++|...|++.
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22333333 35666666677777777776655432 355666666666667777777666665
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=1.2e-10 Score=107.88 Aligned_cols=198 Identities=10% Similarity=-0.031 Sum_probs=153.1
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.+++. .... +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA-LSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHH-HHhC-CCChHHHHHHH
Confidence 345677778888888888888888888664 345778888888888888888888888887 4321 23456677777
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcC
Q 038206 348 SACNHR-GMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHA 423 (614)
Q Consensus 348 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 423 (614)
..+... |++++|...++.+.+ .+..| +...+..+...+.+.|++++|.+.++++ ...| +...|..+...+ ...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK-MLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHcC
Confidence 788888 889999888888875 33334 3567788888888889999998888876 2234 467777777777 8888
Q ss_pred chHHHHHHHHHHHHhcC-CCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 424 SVVLSEEVAKQVIESEG-GICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
++++|...++++.+..| . +...+..+...+...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVL-QADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999888888 6 7777888888888889999998888887653
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=2e-10 Score=116.86 Aligned_cols=292 Identities=11% Similarity=-0.002 Sum_probs=163.9
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHH
Q 038206 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSD---VYINNSLIHFYASCGHLDLANKVFDNMLE-----R----SLVSWNV 206 (614)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~ 206 (614)
......+...|++++|...++.+++.+.... ..++..+...|...|++++|...|++... . ...+|..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3334444555555555555555555432111 23455555666666666666666554311 1 1335666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc--cCCC----hhhHHHHHHHHHhhCc--------------------hhHHHHHHHH
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQIL--FEPD----GYTFQSITSACAGLAT--------------------LSLGMWAHAY 260 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~--~~pd----~~t~~~ll~a~~~~~~--------------------~~~~~~~~~~ 260 (614)
+...|...|++++|+..+++.... ..++ ..++..+...+...|+ ++.|...+..
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 777777777777777777776543 1111 1133333333334444 3333333222
Q ss_pred HHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR--DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
..+ ++.....+ ...+|..+...|...|++++|+..+++......-.+
T Consensus 173 al~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 173 NLS-------------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHH-------------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHH-------------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 221 11111111 123556666666777777777777766521111111
Q ss_pred c----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC
Q 038206 339 N----SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNM----PMKP 406 (614)
Q Consensus 339 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p 406 (614)
+ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|.+.+++. +..+
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 1 235666667777788888888877776542111111 456777888888888888888888765 1112
Q ss_pred C----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHhhcCChhh
Q 038206 407 D----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----CSGVYVLLSRVYASARRWND 462 (614)
Q Consensus 407 ~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 462 (614)
+ ..++..+...+ ...|+++.|...+++..+..... ...++..+...|...|+...
T Consensus 302 ~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 2 45667777777 88899999999999988764331 23456677788887777643
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.33 E-value=7.1e-11 Score=109.24 Aligned_cols=191 Identities=14% Similarity=0.060 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHH
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a 244 (614)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++....-+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 3445555555666666666666666665422 13445555666666666666666666655433111
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc-----------CCHHHHHHHHhcCC--CC-CHHHHHHH
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-----------GSLDIARQVFESMP--KR-DLTSWNSI 310 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~--~~-~~~~~~~l 310 (614)
+...+..+...|.+. |++++|...|++.. .| +...|..+
T Consensus 72 ---------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 72 ---------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 233344444444444 66666666665543 22 44556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
-..|...|++++|+..|++. .... .+...+..+..++...|++++|...|+...+. -+.+...+..+...+.+.|
T Consensus 125 g~~~~~~g~~~~A~~~~~~a-l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQA-LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCChHHHHHHHHHH-Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence 66666666666666666665 3333 44455555666666666666666666666542 1224555556666666666
Q ss_pred CHHHHHHHHHh
Q 038206 391 NIDEALHLVSN 401 (614)
Q Consensus 391 ~~~~A~~~~~~ 401 (614)
++++|.+.|++
T Consensus 200 ~~~~A~~~~~~ 210 (217)
T 2pl2_A 200 KAEEAARAAAL 210 (217)
T ss_dssp -----------
T ss_pred CHHHHHHHHHH
Confidence 66666666554
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.33 E-value=4.4e-10 Score=116.34 Aligned_cols=343 Identities=9% Similarity=-0.031 Sum_probs=197.0
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF---SQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
.+.+. |++++|+++|++..+.|. ...+..+-..+...|+. ++|...+....+. ++..+..|..++...
T Consensus 12 ~~~~~-g~~~~A~~~~~~aa~~g~----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 12 EALKR-GDTVTAQQNYQQLAELGY----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTC----CTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHhC-CCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 33444 666666666666655541 12222233333334444 5666666655533 333444444433333
Q ss_pred C-----CHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHH
Q 038206 184 G-----HLDLANKVFDNMLER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256 (614)
Q Consensus 184 g-----~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~ 256 (614)
| +.++|...|++..++ +...+..|...|...+..+++.+.++..... -..+......+...+...+.++....
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 3 555666666555332 3345555666665555444333333333322 12233344444444555554444333
Q ss_pred HHHHHHHhccCCCCccccHHHHHHHHHHhcC---CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 038206 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCG---SLDIARQVFESMP---KRDLTSWNSIILGFALH----GRAEAALKY 326 (614)
Q Consensus 257 ~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~----g~~~~A~~l 326 (614)
....+.+. ....++..+..|..+|.+.| +.++|.+.|++.. .++...+..|...|... ++.++|++.
T Consensus 163 ~a~~~~~~---a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 163 DVERICKA---ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHH---HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHH---HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 33333332 22234447788888888888 8888888887654 33455556666666544 689999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-----CHHHHHHH
Q 038206 327 FDRLVVEESFSPNSITFVGVLSA-C--NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG-----NIDEALHL 398 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 398 (614)
|++. . . -+...+..+-.. + ...++.++|..+|+...+ .| +...+..|..+|. .| ++++|.+.
T Consensus 240 ~~~a-a-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 240 LEKI-A-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHH-G-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHH-c-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9887 4 2 233344444443 3 458899999999999875 34 5667777888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHH
Q 038206 399 VSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLM 470 (614)
Q Consensus 399 ~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 470 (614)
|++.- .-+...+..|-..| .. ..+.++|...|++..+.|. +.....|..+|.. ..+.++|...++..
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y-~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIY-RRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHH-HTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHh-CCCHHHHHHHHHHH-HCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99987 66777777777666 54 3489999999999988763 4677788888874 45889999999988
Q ss_pred HhCCCc
Q 038206 471 TDKGVT 476 (614)
Q Consensus 471 ~~~g~~ 476 (614)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 887753
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=3.7e-10 Score=104.44 Aligned_cols=206 Identities=11% Similarity=0.012 Sum_probs=146.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
+...|..+...+...|++++|++.|+++.... +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~l 48 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------------------------------------PKNELAWLVR 48 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------------------------------------ccchHHHHHH
Confidence 34566677777777777777777777665431 2234456666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccC
Q 038206 280 IDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALH-GRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRG 354 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g 354 (614)
...|...|++++|.+.|++.. ..+..+|..+...|... |++++|+..++++ ...+..|+ ...+..+..++...|
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcC
Confidence 677777777777777776654 33566777788888888 8888888888887 44333343 466777777888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHhcCchHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK--PDAVIWRSLLDACCKKHASVVLSEEV 431 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~~a~~~ 431 (614)
++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ... .+...+..+...+ ...|+.+.+...
T Consensus 128 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~ 204 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA-KALGNAQAAYEY 204 (225)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HhcCcHHHHHHH
Confidence 888888888888653 2335777888888899999999999888876 222 3566666666666 888999999999
Q ss_pred HHHHHHhcCCCCchhHH
Q 038206 432 AKQVIESEGGICSGVYV 448 (614)
Q Consensus 432 ~~~~~~~~~~~~~~~~~ 448 (614)
++.+.+..|. +.....
T Consensus 205 ~~~~~~~~p~-~~~~~~ 220 (225)
T 2vq2_A 205 EAQLQANFPY-SEELQT 220 (225)
T ss_dssp HHHHHHHCTT-CHHHHH
T ss_pred HHHHHHhCCC-CHHHHH
Confidence 9998888877 554443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.32 E-value=3.4e-10 Score=108.37 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=178.7
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHH
Q 038206 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSL----VSWNVMI 208 (614)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~----~~~~~li 208 (614)
...+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667778899999999999999999875 34566888899999999999999999998744 222 2488999
Q ss_pred HHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
..|...|++++|++.|++.... .+.+..++..+...|.+.|+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--------------------------------------~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--------------------------------------DTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------------------------------------STTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhc--------------------------------------CcccHHHHHHHHHHHHHccC
Confidence 9999999999999999988642 12345678888899999999
Q ss_pred HHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCC---HHHHHH
Q 038206 289 LDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGM---VSEGRD 361 (614)
Q Consensus 289 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~ 361 (614)
+++|...|++..+ .+...|..+...+...+++++|++.|++. .. ..|+ ...+..+...+...++ .++|..
T Consensus 124 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV-LE--LKPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--hCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 9999999988763 35677777772344456999999999988 44 2344 4556666666776677 777888
Q ss_pred HHHHHHHhcCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 038206 362 YFDVMINEYNITPV------LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSL 414 (614)
Q Consensus 362 ~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 414 (614)
.++...+...-.|+ ...|..+...|.+.|++++|.+.|++. ...|+ ...+..+
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 88887664333344 257788899999999999999999886 34453 4444333
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=2.5e-10 Score=108.01 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
...|..+...+... |++++|++.|+++.+.. + .+...+..+...+...|++++|.+.++.+.+.. +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQR-GNTEQAKVPLRKALEID-P-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHT-TCTGGGHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 45677777788888 88999999988888775 2 355677777788888888888888888888765 33566777788
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh
Q 038206 178 HFYASCGHLDLANKVFDNMLE----R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 252 (614)
..|.+.|++++|.+.|++..+ + +...|..+...|.+.|++++|+..|++.....
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------- 171 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------------------- 171 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------
Confidence 888888888888888887754 2 34567777777888888888888877765431
Q ss_pred HHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
+.+...+..+...|.+.|++++|...|+.+. ..+...|..+...+...|+.++|.+.+++
T Consensus 172 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 172 -----------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp -----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2234455666666777777777777776553 23556666777777777777777777777
Q ss_pred H
Q 038206 330 L 330 (614)
Q Consensus 330 m 330 (614)
+
T Consensus 235 ~ 235 (252)
T 2ho1_A 235 L 235 (252)
T ss_dssp H
T ss_pred H
Confidence 6
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=4.5e-11 Score=112.35 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=147.7
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.....+..+...+...|++++|...|+++. ..+...|..+...|...|++++|++.|++. .... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKA-LELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CcchHHHHHHH
Confidence 345677788888999999999999988774 346788888999999999999999999988 4432 23557777888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCch
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~ 425 (614)
..+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+ ...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL-ANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHcCCH
Confidence 8899999999999999998763 2446778888999999999999999999886 223 3677888888888 889999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.|...++++.+..|. +..++..+..+|.+.|++++|.+.+++..+.
T Consensus 176 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999888 8889999999999999999999999988764
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=4.4e-11 Score=112.42 Aligned_cols=209 Identities=11% Similarity=0.051 Sum_probs=126.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
....|..+...+.+.|++++|+..|++.....+ .+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--------------------------------------~~~~~~~~l 63 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--------------------------------------EDAIPYINF 63 (243)
T ss_dssp --------------------CCTTHHHHHTTCT--------------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--------------------------------------ccHHHHHHH
Confidence 344566666777777777777777777654312 223344455
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH
Q 038206 280 IDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~ 356 (614)
...|.+.|++++|...|++.. ..+..+|..+...|...|++++|++.++++ .... +.+...+..+...+...|++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA-LRAG-MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHhccH
Confidence 555555566666665555443 235566666777777777777777777776 3321 22445566667777778888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ... .+..+|..+...+ ...|++++|...+++
T Consensus 142 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 142 KLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY-AYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHccCHHHHHHHHHH
Confidence 8888888777652 2335667778888888888888888888776 222 3567788888888 888999999999999
Q ss_pred HHHhcCCCCchhHHHHHH
Q 038206 435 VIESEGGICSGVYVLLSR 452 (614)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~ 452 (614)
+.+..|. +...+..+..
T Consensus 219 ~~~~~p~-~~~~~~~~~~ 235 (243)
T 2q7f_A 219 AIDIQPD-HMLALHAKKL 235 (243)
T ss_dssp HHHHCTT-CHHHHHHHTC
T ss_pred HHccCcc-hHHHHHHHHH
Confidence 9998888 6666655433
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=2.1e-10 Score=116.81 Aligned_cols=267 Identities=13% Similarity=0.102 Sum_probs=152.4
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc-----chHHHHHHHHHccCCcHHHHHHHHHHHHh----CCC
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK-----HTFPFALKACAYLFAFSQGKQAHAHIFKR----GLV 167 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~ 167 (614)
....+...-..+... |++++|+..|++..+.+ |+. ..+..+...+...|+++.|...++.+++. +-.
T Consensus 8 ~~~~l~~~g~~~~~~-g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKS-GDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 344555566677777 88888888888888775 432 45666777788888888888888876543 211
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCC--------------------h
Q 038206 168 S-DVYINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGE--------------------F 217 (614)
Q Consensus 168 ~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~ 217 (614)
| ...++..+...|...|++++|...|++..+ .+ ..+|..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 245677788888888998888888876632 12 3477888888888888 8
Q ss_pred hHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHH
Q 038206 218 DSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295 (614)
Q Consensus 218 ~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (614)
++|+..+.+.... ..++.. ....++..+...|...|++++|...
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRA----------------------------------AQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH----------------------------------HHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcH----------------------------------HHHHHHHHHHHHHHHccCHHHHHHH
Confidence 8888887776543 111110 0112333444444444444444444
Q ss_pred HhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCcc-HHHHHHHHHHHhccCCHHHHHH
Q 038206 296 FESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSPN-SITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 296 ~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
|++..+ ++ ..+|..+...|...|++++|...+++. .. .+..+. ..++..+...+...|++++|..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 443321 11 124444555555555555555555544 21 111111 2344555555556666666666
Q ss_pred HHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 362 YFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 362 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.++...+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65555432111111 345556666666666666666665543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=9.1e-11 Score=119.96 Aligned_cols=265 Identities=9% Similarity=0.004 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hHHHHHHHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHH
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLE--R-SL----VSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSIT 242 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll 242 (614)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.... ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 344556677778888888888877622 2 22 35777777777888888888887776543 0000
Q ss_pred HHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCHHHHHHHHHH
Q 038206 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---------RDLTSWNSIILG 313 (614)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~ 313 (614)
.+....++..+...|...|++++|...|++..+ ....+|..+...
T Consensus 122 --------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 122 --------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 111234455566666666676666666655431 123456666667
Q ss_pred HHhcCC-----------------HHHHHHHHHHHhhh----cCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 314 FALHGR-----------------AEAALKYFDRLVVE----ESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 314 ~~~~g~-----------------~~~A~~l~~~m~~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
|...|+ +++|++.+++. .. .+-.|. ..++..+...+...|++++|...++...+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 777777 77777777654 21 111222 24566667777888888888888877754211
Q ss_pred CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 372 ITPV----LEHYGCLVDLLARAGNIDEALHLVSNM----PMKP----DAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
-.++ ...+..+...|...|++++|.+.+++. +... ...++..+...+ ...|++++|...++++++..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Confidence 1112 236777888888888888888888765 1011 145677777777 88899999999999888764
Q ss_pred CCC-----CchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 440 GGI-----CSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 440 ~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+.. ...++..+..+|.+.|++++|...+++..+
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 331 134677889999999999999999988755
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=2.8e-10 Score=112.30 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PM---KPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
..+..+...|...|++++|.+.+++. .. .++ ..++..+...+ ...|++++|...++++.+..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHH
Confidence 34455555555556666555555543 00 011 23455555555 666667777776666665543
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.26 E-value=3.7e-10 Score=116.90 Aligned_cols=367 Identities=10% Similarity=-0.001 Sum_probs=205.8
Q ss_pred CChhHHHHHHhcCCC-CChhhHHHHHHHHHcCCCCc---hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC-----Cc
Q 038206 81 ADLDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAK---PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF-----AF 151 (614)
Q Consensus 81 g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~~~~~---~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-----~~ 151 (614)
|++++|.+.|.+..+ .++.++..+-..|... |++ ++|+..|++.... +...+..+...+...+ +.
T Consensus 17 g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~-g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYSEAQVGLADIQVGT-RDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 677777777766543 2333444444444444 555 6777777666543 2223444444333332 55
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH---HHHHHhhcC-CCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL---ANKVFDNML-ERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
++|...+....+.|. ...+..|..+|...+..+. +.+.+.... ..+...+..|...|...+.++++.......
T Consensus 91 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 91 HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 667777777766552 2255556666665544333 222232221 224556666666677666665555554444
Q ss_pred hhc-cCCChhhHHHHHHHHHhhC---chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc----CCHHHHHHHHhcC
Q 038206 228 QIL-FEPDGYTFQSITSACAGLA---TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC----GSLDIARQVFESM 299 (614)
Q Consensus 228 ~~~-~~pd~~t~~~ll~a~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m 299 (614)
.+. ...+...+..+-..+...| +.+.+...+....+. | +++...+..|..+|... +++++|...|++.
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 333 3334446666666666666 666666666666665 4 33344445677777554 6889999999877
Q ss_pred CCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcC
Q 038206 300 PKRDLTSWNSIILG-F--ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG-----MVSEGRDYFDVMINEYN 371 (614)
Q Consensus 300 ~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~ 371 (614)
...+...+..|-.. | ...++.++|++.|++. ...| +...+..+-..|. .| ++++|..+|+...
T Consensus 244 a~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A-a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 244 APGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG-RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp GGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 73366677777666 3 4578999999999887 6655 3444444544454 44 8999999888663
Q ss_pred CCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCC
Q 038206 372 ITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGIC 443 (614)
Q Consensus 372 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 443 (614)
.-+...+..|..+|.. ..++++|.+.|++.-..-+......|-..| .. ..+.++|...+++..+.|.. +
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~G~g~~~d~~~A~~~~~~A~~~g~~-~ 391 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF-SQGKGTKPDPLNAYVFSQLAKAQDTP-E 391 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HSCTTBCCCHHHHHHHHHHHHTTCCH-H
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHCCCH-H
Confidence 3456677777777776 348999999998762222344445555555 42 45889999999999888865 3
Q ss_pred chhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 444 SGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.......+......++.++|..+.++-.+
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33333333333445566777777766543
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.26 E-value=2.6e-09 Score=102.41 Aligned_cols=158 Identities=11% Similarity=-0.048 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 274 LVNNSLIDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 274 ~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
..+..+...|.. .|++++|...|++..+ .+..++..+...|.. .++.++|++.|++. ...+ +...+.
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a-~~~~---~~~a~~ 150 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA-CDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH-HHTT---CHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HhcC---cHHHHH
Confidence 344444555555 5555555555544332 234444444455554 55555555555554 3322 222333
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038206 345 GVLSACNH----RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLD 416 (614)
Q Consensus 345 ~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 416 (614)
.+-..+.. .+++++|...|+...+. + +...+..+..+|.. .+++++|.+.|++.-...+...+..+-.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 226 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGA 226 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33333333 45555555555544431 1 23334444444444 4444444444444310112333333333
Q ss_pred HHHHh----cCchHHHHHHHHHHHHhcC
Q 038206 417 ACCKK----HASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 417 ~~~~~----~~~~~~a~~~~~~~~~~~~ 440 (614)
.+ .. .+++++|.+.+++..+.+|
T Consensus 227 ~~-~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQ-YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HH-HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HH-HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 33 33 4444444444444444443
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=1e-08 Score=109.97 Aligned_cols=400 Identities=9% Similarity=0.035 Sum_probs=225.0
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCC---chHHHHHHHHHHHcCCCCCCcc
Q 038206 64 QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDA---KPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~---~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
.| . ..|..++..+.+ +.++.++.+|+++.. | ....|..-+..-.+. +. ++.+..+|++........|+..
T Consensus 64 ~d-~-~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 64 TD-I-FLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TC-H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CC-H-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 56 6 888888888877 888888888888765 3 455677777777777 77 8888888888887653226666
Q ss_pred hHHHHHHHHHccCCc--------HHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHH---------hcCCHHHHHHHHhhc
Q 038206 137 TFPFALKACAYLFAF--------SQGKQAHAHIFK-RGL-VSD-VYINNSLIHFYA---------SCGHLDLANKVFDNM 196 (614)
Q Consensus 137 t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~---------~~g~~~~A~~~f~~m 196 (614)
.|..-+.-....++. +...++|+..+. .|. .++ ..+|...+.... ..++++.+.++|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 676666655444443 334577776655 465 453 457777776543 234567788888877
Q ss_pred CC-C--Ch-hHHH---HHHHHHH----------hcCChhHHHHHHHHhhhc---c---CCCh------------------
Q 038206 197 LE-R--SL-VSWN---VMIDAFV----------QFGEFDSALKLFRRMQIL---F---EPDG------------------ 235 (614)
Q Consensus 197 ~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~---~---~pd~------------------ 235 (614)
.. | +. .+|. .+...+. ...+++.|...+.++... + -|..
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 43 2 11 1232 2222110 011223344444443211 0 0100
Q ss_pred --hhHHHHHHHHHhhC-------chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH-HHHhcCC---CC
Q 038206 236 --YTFQSITSACAGLA-------TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR-QVFESMP---KR 302 (614)
Q Consensus 236 --~t~~~ll~a~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~---~~ 302 (614)
..|...+.---..+ ..+....+++..+.. ++.+..+|-..+..+...|+.++|. ++|++.. ..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 11222221111111 012234556666654 3445566666666666777776775 6666544 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC---------CCcc------------HHHHHHHHHHHhccCCHHHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEES---------FSPN------------SITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
+...|-..+...-+.|++++|.++|+++ .... -.|+ ...|...+....+.|.++.|+.
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~-l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSC-IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666666667777777777777766 3210 0131 2345566666666677777777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAG-NIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 438 (614)
+|....+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+.-. ...|+.+.|..+|++++..
T Consensus 456 vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe-~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 456 IFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL-IYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHh
Confidence 777775520 1112233333333333443 367777777665 1112455566666655 6667777777777777766
Q ss_pred cCCC--CchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 439 EGGI--CSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 439 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+.+ ....|...+..-.+.|..+.+.++.+++.+.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5531 2345666666667777777777777777654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=4e-10 Score=111.15 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=178.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 173 NNSLIHFYASCGHLDLANKVFDNMLE--R-S----LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
+......+...|++++|...|++..+ | + ...|..+...|...|++++|++.+++....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 72 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL--------------- 72 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------
Confidence 34445566777777777777776521 2 2 245666777777777777777777766532
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPK-----RD----LTSWNSIILGFA 315 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~ 315 (614)
..+. +..+ ...++..+...|...|++++|...|++..+ ++ ..++..+...|.
T Consensus 73 ---------------~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 73 ---------------ARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp ---------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------hhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 0000 1111 234556666777777777777777665431 12 236666777777
Q ss_pred hcCC--------------------HHHHHHHHHHHhh---hcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 316 LHGR--------------------AEAALKYFDRLVV---EESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 316 ~~g~--------------------~~~A~~l~~~m~~---~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
..|+ +++|++.+++... ..+..|. ..++..+...+...|++++|...++...+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777 7778777766511 1111222 24566677778888999999998888764211
Q ss_pred CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 372 ITPV----LEHYGCLVDLLARAGNIDEALHLVSNM----PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+ ...|++++|...++++.+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 1112 337788889999999999999988875 11122 45677777777 89999999999999998765
Q ss_pred CCC-C----chhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 440 GGI-C----SGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 440 ~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.. + ..++..+..+|.+.|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 431 1 346778999999999999999999987653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=2.3e-10 Score=116.97 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP----VLEHYGCLVDLLARAGNIDEALHLVSNM-PM---KPD----AV 409 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~ 409 (614)
++..+...+...|++++|...++...+...-.. ....+..+...|...|++++|.+.+++. .. .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 445555556666666666666655543211001 1345666677777777777777766654 10 011 33
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
++..+...+ ...|++++|.+.++++.+....
T Consensus 345 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAH-SAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHH-HHhccHHHHHHHHHHHHHHHhh
Confidence 566666666 7778888888888888776544
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.24 E-value=4.7e-10 Score=112.70 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=147.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCc-hhHHHHHHHHHHHhccCCCCccccHHHHHHH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT-LSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~ 281 (614)
.|+.+...+.+.|++++|+..|++....-+-+...|..+..++...|+ +++|...+..+++. -+.+..+|+.+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHHHHHHH
Confidence 445555555555555555555555544323334444444445555553 55555555555543 2234556677777
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhc-cCCH
Q 038206 282 MYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNH-RGMV 356 (614)
Q Consensus 282 ~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~-~g~~ 356 (614)
+|.+.|++++|...|+++. ..+...|..+...+.+.|++++|+..|+++ .. +.| +...|..+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a-l~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL-LK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 7777777777777777665 336677777777777777777777777776 33 233 33556666666666 4554
Q ss_pred HHH-----HHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhcC----
Q 038206 357 SEG-----RDYFDVMINEYNITP-VLEHYGCLVDLLARAG--NIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHA---- 423 (614)
Q Consensus 357 ~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~---- 423 (614)
++| ...|+..++ +.| +...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+ ...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~-~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY-EDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH-HHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHH-HHHhcccc
Confidence 555 466666654 234 4667777777777777 5777887777764444 455666676666 5442
Q ss_pred -----chHHHHHHHHHH-HHhcCCCCchhHHHHHHHHh
Q 038206 424 -----SVVLSEEVAKQV-IESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 424 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 455 (614)
.+++|.++++++ .+.+|. ....|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 257888888888 777777 5666666555444
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.24 E-value=4.4e-09 Score=100.86 Aligned_cols=224 Identities=12% Similarity=-0.002 Sum_probs=178.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
+..++..+...|...|++++|+..|++.. +. + +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----------------------------------~~---~---~~~a~~~l 44 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC----------------------------------DL---K---ENSGCFNL 44 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------------HT---T---CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH----------------------------------HC---C---CHHHHHHH
Confidence 44555666666666666666666666554 21 2 23456677
Q ss_pred HHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 280 IDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 280 i~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
...|.. .|++++|...|++..+ .+..++..+...|.. .++.++|++.|++. ...+ +...+..+-..+
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA-CDLK---YAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHH-HHcC---CccHHHHHHHHH
Confidence 788888 9999999999987653 377888999999999 99999999999998 5554 566777788888
Q ss_pred hc----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-
Q 038206 351 NH----RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK- 421 (614)
Q Consensus 351 ~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~- 421 (614)
.. .+++++|...|+...+. + +...+..+...|.. .+++++|.+.|++.--..+...+..+-..+ ..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~-~~g 195 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY-HHG 195 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHT
T ss_pred HcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HcC
Confidence 88 99999999999999763 3 56677888889988 999999999998862224667788888888 88
Q ss_pred ---cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHHHhCCC
Q 038206 422 ---HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 422 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 475 (614)
.+++++|...+++..+.++ ...+..+..+|.+ .|++++|.+.+++..+.|-
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8999999999999999865 5778889999999 9999999999999877653
No 63
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.20 E-value=2.8e-09 Score=106.97 Aligned_cols=211 Identities=8% Similarity=0.007 Sum_probs=142.6
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHccCC-cHHHHHHHHHHHHhCCCCchhHHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFA-FSQGKQAHAHIFKRGLVSDVYINNS 175 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (614)
...|+.+-..+.+. |++++|+..|++.++.. | +...|..+..++...|+ +++|...++.+++.. +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~-g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRD-ERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHC-CChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 35677777788888 89999999999988876 4 45567777788888886 999999999888876 346778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh-hCch
Q 038206 176 LIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG-LATL 251 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~-~~~~ 251 (614)
+..+|.+.|++++|+..|++.. ..+...|..+...+.+.|++++|+..|+++...-+-+...|..+..++.. .+..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888888773 33667888888888888888888888888876544455566666666655 3433
Q ss_pred hHH-----HHHHHHHHHhccCCCCccccHHHHHHHHHHhcC--CHHHHHHHHhcCC--CCCHHHHHHHHHHHHhc
Q 038206 252 SLG-----MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG--SLDIARQVFESMP--KRDLTSWNSIILGFALH 317 (614)
Q Consensus 252 ~~~-----~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~ 317 (614)
+.+ ...+..+++. -+.+...|+.+...|.+.| ++++|.+.+.++. ..+...+..+...|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 444 2444444443 1223445555555555555 3455555554441 12344455555555444
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=2.3e-10 Score=119.20 Aligned_cols=193 Identities=8% Similarity=-0.046 Sum_probs=163.9
Q ss_pred ccccHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSL-DIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~l 346 (614)
.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|++.|++. .. +.|+...+..+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~l 176 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA-LT--HCKNKVSLQNL 176 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HT--TCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--hCCCHHHHHHH
Confidence 4567788888888888999 99998888765 335788999999999999999999999987 44 45777888888
Q ss_pred HHHHhcc---------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC--
Q 038206 347 LSACNHR---------GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA--------GNIDEALHLVSNM-PMKP-- 406 (614)
Q Consensus 347 l~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p-- 406 (614)
...+... |++++|...|+...+. -+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 8889998 9999999999999763 233678889999999998 9999999999887 4455
Q ss_pred --CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 407 --DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 407 --~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
+...|..+...+ ...|++++|.+.|+++.+..|. +...+..+..++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLH-KYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 778888888888 9999999999999999999999 8889999999999999999998765443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=2.4e-09 Score=95.88 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
+...|..+-..|.+.|++++|++.|++. .+ +.|+ ..++..+..++.+.|++++|...+...... .+.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKV-LK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 3455666666666666666776666665 32 2333 345555666666777777777777666542 2234555666
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+...+...++++.|.+.+.+. ...| +...|..+...+ ...|++++|++.++++++..|. +..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY-DSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCC
Confidence 666777777777777777665 2233 456666666666 7778888888888888888877 77788888888888888
Q ss_pred hhhHHHHHHHHHh
Q 038206 460 WNDVGLVRKLMTD 472 (614)
Q Consensus 460 ~~~a~~~~~~m~~ 472 (614)
+++|.+.|++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877665
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=8.7e-09 Score=100.76 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHH-HHHHHHHHHHhcCCHHHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLT-SWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l 326 (614)
++|..+++..++. +.| +...|..+...+.+.|++++|..+|++..+ | +.. .|..+...+.+.|+.++|..+
T Consensus 81 ~~A~~~~~rAl~~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAIST----LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTT----TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 4555555555541 233 344677777777777777777777776542 2 233 677777777777777777777
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-
Q 038206 327 FDRLVVEESFSPNSITFVGVLSAC-NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P- 403 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~- 403 (614)
|++. .... +++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++. .
T Consensus 157 ~~~a-~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 157 FKKA-REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHH-HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHH-HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7776 3321 12223333222221 23577777777777776532 235666777777777777777777777765 1
Q ss_pred --CCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 404 --MKP--DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 404 --~~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.| ....|..++... ...|+.+.|..+++++.+..|+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~-~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHccc
Confidence 233 355677777666 7777777777777777777765
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=3.6e-09 Score=107.07 Aligned_cols=162 Identities=11% Similarity=0.109 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCc-cH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSP-NS 340 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p-~~ 340 (614)
+++.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++. .. .+..| ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHH
Confidence 455555666666666666665554331 11 124555555556666666666665554 22 02212 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEY---NITPVLEHYGCLVDLLARAGN---IDEALHLVSNMPMKPDAV-IWRS 413 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ 413 (614)
.++..+...+...|++++|...++...+-. +-+.....+..+...|...|+ +++|..++++.+..|+.. .+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 445555555555666666666555543311 111111223344444555555 555555555543333222 2333
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHh
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~ 438 (614)
+...+ ...|+++.|...++++.+.
T Consensus 345 la~~y-~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 345 VAKYY-HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHH
Confidence 33333 4555555555555554443
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=7e-09 Score=101.44 Aligned_cols=113 Identities=5% Similarity=0.023 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCCCCCcchHHHHHHHHH-------ccCCc-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACA-------YLFAF-------SQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (614)
++|+..|++..... + -+...|......+. ..|++ ++|..+++..++.-.+.+...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~-p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-G-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56777888777765 1 24456666665554 34665 777777777776311334556777777777
Q ss_pred hcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 182 SCGHLDLANKVFDNMLE--R-SLV-SWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77778888777777633 2 233 6777777777777777777777777654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=5.9e-10 Score=108.84 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+.+..+...++......+. +..++..+..+|.+.|++++|.+.+++..
T Consensus 258 ~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444555555544444 45566666677777777777777666554
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.09 E-value=9.4e-09 Score=91.90 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 038206 170 VYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACA 246 (614)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~ 246 (614)
..+|..|-..|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+.+.....+-+...+..+...+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4455555555555555555555555542 1244455555556666666666666655554433333334444444444
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 323 (614)
..++.+.+...+....+. .+.+...+..+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIAL----NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 455555555555554443 23344556666666777777777777666554 23556666666777777777777
Q ss_pred HHHHHHH
Q 038206 324 LKYFDRL 330 (614)
Q Consensus 324 ~~l~~~m 330 (614)
++.|++.
T Consensus 161 ~~~~~~a 167 (184)
T 3vtx_A 161 VKYFKKA 167 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=8.9e-09 Score=91.67 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~ 351 (614)
.+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|.+.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--------------------- 68 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS--------------------- 68 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------
Confidence 344445555555555555555555442 23444555555555555555555555544
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCchHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
.+. .+.+...+..+...|...|++++|.+.++++ .. ..+...|..+...+ ...|++++|.
T Consensus 69 ---------------~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~ 130 (186)
T 3as5_A 69 ---------------LAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL-DNLGRFDEAI 130 (186)
T ss_dssp ---------------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHH
T ss_pred ---------------Hhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH-HHcCcHHHHH
Confidence 331 1223344444555555555555555555443 11 12444555555555 5666666666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..++++.+..|. +...+..+..+|...|++++|...+++..+
T Consensus 131 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 131 DSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666655 556666666666666666666666665543
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.06 E-value=4.8e-09 Score=109.21 Aligned_cols=208 Identities=10% Similarity=-0.012 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 038206 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF-SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193 (614)
Q Consensus 115 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 193 (614)
+++++..+++..... + .+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+..+|.+.|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-Q-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-C-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-c-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666554433 1 2445566666667777777 77777777777654 234556666777777777777777777
Q ss_pred hhc--CCCChhHHHHHHHHHHhc---------CChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHH
Q 038206 194 DNM--LERSLVSWNVMIDAFVQF---------GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262 (614)
Q Consensus 194 ~~m--~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 262 (614)
++. ..|+...|..+...|... |++++|+..|++..+..+
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------------------------------ 210 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV------------------------------ 210 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT------------------------------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC------------------------------
Confidence 665 234445666666666666 666666666666554322
Q ss_pred HhccCCCCccccHHHHHHHHHHhc--------CCHHHHHHHHhcCC--C----CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 263 RHCDHSLVTDVLVNNSLIDMYCKC--------GSLDIARQVFESMP--K----RDLTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 263 ~~~~~g~~~~~~~~~~li~~y~~~--------g~~~~A~~~~~~m~--~----~~~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
.+...+..+...|... |++++|...|++.. . .+...|..+...|...|++++|++.|+
T Consensus 211 --------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 211 --------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2334455555555555 55666666665543 2 255666666666777777777777776
Q ss_pred HHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 329 RLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 329 ~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
+. .. ..|+ ...+..+..++...|++++|.+.+..+
T Consensus 283 ~a-l~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 283 QA-AA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH-HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH-HH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 65 33 2233 244555666666667777777666655
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.05 E-value=1e-08 Score=103.70 Aligned_cols=220 Identities=8% Similarity=-0.048 Sum_probs=121.0
Q ss_pred HHHccCCcHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----hhHHHHHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKR----GLVS-DVYINNSLIHFYASCGHLDLANKVFDNMLE-----RS-----LVSWNVMI 208 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~-----~~~~~~li 208 (614)
.+...|++++|...+....+. +-.+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345556666666666665542 1011 123455555566666666655555544311 11 23455555
Q ss_pred HHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 209 DAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
..|...|++++|+..|++.... -.++. .....++..+...|...
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQP----------------------------------QLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCCh----------------------------------HHHHHHHHHHHHHHHHC
Confidence 5566666666666655555432 01111 01123566666677777
Q ss_pred CCHHHHHHHHhcCCC--------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc----CCCccHHHHHHHHHHHhcc
Q 038206 287 GSLDIARQVFESMPK--------R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEE----SFSPNSITFVGVLSACNHR 353 (614)
Q Consensus 287 g~~~~A~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----g~~p~~~t~~~ll~a~~~~ 353 (614)
|++++|.+.|++..+ | ...++..+...|...|++++|.+.+++. ... +-+.....+..+-..+...
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG-MAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 777776666655432 2 2345666667777777777777777665 221 1111123345566667777
Q ss_pred CC---HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 354 GM---VSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 354 g~---~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
|+ .++|..+++.. +..| ....+..+...|.+.|++++|.+.+++.
T Consensus 317 ~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77 66666666544 2233 3446667788888888888888777654
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.04 E-value=2.3e-07 Score=99.53 Aligned_cols=370 Identities=10% Similarity=0.043 Sum_probs=248.3
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC---cHHHHHHHHHHHHhCC-CCchh
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA---FSQGKQAHAHIFKRGL-VSDVY 171 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~ 171 (614)
.|..+|..+|..+.+. +.++.+..+|+++...- + .+...|..-+..-.+.++ .+.+.++|+..+.... .|++.
T Consensus 64 ~d~~~W~~yi~~~~~~-~~~~~aR~vyEraL~~f-P-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSL-KQWKQVYETFDKLHDRF-P-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4888999999999998 99999999999999875 2 345567777777778888 9999999999988642 47888
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHhhc-----C-CC-ChhHHHHHHHHHH---------hcCChhHHHHHHHHh
Q 038206 172 INNSLIHFYASCGHL--------DLANKVFDNM-----L-ER-SLVSWNVMIDAFV---------QFGEFDSALKLFRRM 227 (614)
Q Consensus 172 ~~~~li~~~~~~g~~--------~~A~~~f~~m-----~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 227 (614)
.|...+....+.++. +...++|+.. . .+ +...|...+.-.. ..++.+.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 898888876666654 3344777753 1 23 3457888776443 234567788888888
Q ss_pred hhc-cCCChhhHH---HHHHHHH----------hhCchhHHHHHHHHHHHhccCCC----Ccc-----------------
Q 038206 228 QIL-FEPDGYTFQ---SITSACA----------GLATLSLGMWAHAYILRHCDHSL----VTD----------------- 272 (614)
Q Consensus 228 ~~~-~~pd~~t~~---~ll~a~~----------~~~~~~~~~~~~~~~~~~~~~g~----~~~----------------- 272 (614)
... ...-..+|. ....... ....++.|+..+..+.+..+ ++ +..
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccchhccCCCCchhHH
Confidence 743 111122222 2111110 01122333444443333211 11 110
Q ss_pred --ccHHHHHHHHHHhcC-------CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhhcCCCcc
Q 038206 273 --VLVNNSLIDMYCKCG-------SLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAAL-KYFDRLVVEESFSPN 339 (614)
Q Consensus 273 --~~~~~~li~~y~~~g-------~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~~g~~p~ 339 (614)
...|...++.--..+ ..+.+..+|++.. ..+...|-..+.-+.+.|+.++|. ++|++. .. ..+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA-i~-~~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG-QQ-CIPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH-HH-HCTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HH-hCCCC
Confidence 235556665444332 1344556677664 347788888888888899999997 999987 43 23334
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---------CCCCC------------hhHHHHHHHHHHHcCCHHHHHHH
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEY---------NITPV------------LEHYGCLVDLLARAGNIDEALHL 398 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---------~~~p~------------~~~~~~li~~~~~~g~~~~A~~~ 398 (614)
...+...+...-..|+++.|.++|+.+.... .. |+ ...|...++...+.|.++.|.++
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456667777788899999999999987631 11 42 34788899999999999999999
Q ss_pred HHhCCCC-----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 399 VSNMPMK-----PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 399 ~~~m~~~-----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
|.+.... +......+.+.- ...++.+.|..+|+..++.-|. +...+...++.....|+.+.|..+|++....
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~--~~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEY--HISKDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHH--TTTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCChHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9987211 223333333331 2345699999999999999888 7777788899889999999999999998765
Q ss_pred CC
Q 038206 474 GV 475 (614)
Q Consensus 474 g~ 475 (614)
..
T Consensus 534 ~~ 535 (679)
T 4e6h_A 534 IS 535 (679)
T ss_dssp SS
T ss_pred cC
Confidence 44
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=1.2e-07 Score=95.49 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=95.2
Q ss_pred HHHHhcCChhHHHHHHHHhhhc--cCCC----hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCC--Cc-cccHHHHH
Q 038206 209 DAFVQFGEFDSALKLFRRMQIL--FEPD----GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL--VT-DVLVNNSL 279 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~--~~pd----~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~--~~-~~~~~~~l 279 (614)
..+...|++++|+..|++.... ..+| ..++..+..++...|+.+.|...+....+...... .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3345566666666666665443 1122 11233333333444444444444433333211000 11 12344555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCccHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSPNSITFVGV 346 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p~~~t~~~l 346 (614)
...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++. .. .+.+....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhHHHHHHHH
Confidence 5556666666666555544321 11 124444555555555555555555544 21 0111113344444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNI---TPVLEHYGCLVDLLARAGN---IDEALHLVSNMPMKPDAV-IWRSLLDACC 419 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~~~ 419 (614)
...+.+.|++++|...++...+...- +.....+..+...|...|+ +++|...+++.+..|+.. .+..+...+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y- 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF- 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH-
Confidence 44555555555555555554432111 1112223333334444444 444555554443222222 222233333
Q ss_pred HhcCchHHHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVI 436 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~ 436 (614)
...|+++.|...++++.
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44445555554444443
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=7.5e-09 Score=112.37 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGC 381 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 381 (614)
..+|+.|-..|.+.|++++|++.|++. .+ +.|+ ..++..+-.++.+.|++++|.+.|+...+. .| +...|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kA-l~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKA-LE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345666666666666666666666655 32 2343 355666666666777777777777666542 33 4566777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+..+|.+.|++++|++.|++. .+.| +...|+.+...+ ...|++++|++.|+++++..|+ +...|..|..+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~-~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH-KDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 777777777777777777665 3344 456777777777 7778888888888888888887 77788888888888888
Q ss_pred hhhHHHHHHHHH
Q 038206 460 WNDVGLVRKLMT 471 (614)
Q Consensus 460 ~~~a~~~~~~m~ 471 (614)
+++|.+.+++..
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=8.2e-10 Score=107.80 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHc-------CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh------
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQ-------GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR------ 164 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 164 (614)
..+|..+...+... |++++|+..|+++.+. ..+ ....++..+...+...|++++|...+..+++.
T Consensus 27 ~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 27 LRTLHNLVIQYASQ-GRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45566777777777 7888888887777663 111 23345566666667777777777777766653
Q ss_pred CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 165 GL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLE-------R----SLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 165 g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+- +....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++..
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 11234555666666666666666666655421 0 12345555555666666666666665554
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.00 E-value=3e-08 Score=88.19 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHH
Q 038206 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIIL 312 (614)
Q Consensus 236 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 312 (614)
..+..+...+...|+++.+...+..+.+. .+.+..++..+...|...|++++|...|+++. ..+...|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35666777888999999999999887753 34467788999999999999999999998765 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (614)
.+...|++++|.+.++++ ... .+.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKV-AEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHH-Hhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCH
Confidence 888888888888888877 332 1233455555666666667777777766666542 122344444455555555555
Q ss_pred HHHHHHHHh
Q 038206 393 DEALHLVSN 401 (614)
Q Consensus 393 ~~A~~~~~~ 401 (614)
++|.+.+++
T Consensus 161 ~~A~~~~~~ 169 (186)
T 3as5_A 161 EEALPHFKK 169 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=3.9e-07 Score=91.51 Aligned_cols=196 Identities=14% Similarity=0.027 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC-------C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC--Cc--c
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP-------K---R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESF--SP--N 339 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~-------~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~--~p--~ 339 (614)
++..+...|...|++++|...+++.. . + ...++..+...+...|++++|...+++. ..... .+ .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTTTSCGGGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHhhccCcHHH
Confidence 34566677778888888877776543 1 1 1245566777788889999999888876 33211 11 2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----H
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-----CLVDLLARAGNIDEALHLVSNMP-MKPD-----A 408 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~ 408 (614)
..++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 24566677778889999999999988765311111111111 23445778999999999998872 2221 3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC----c-hhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC----S-GVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+..+...+ ...|++++|...++++.+..+... . ..+..+..+|...|+.++|...+++...
T Consensus 254 ~~~~~la~~~-~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566666777 888999999999998876543211 1 3566778889999999999999988654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=6.2e-07 Score=90.05 Aligned_cols=222 Identities=10% Similarity=0.001 Sum_probs=105.4
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-Cc----hhHHHHHH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKH----TFPFALKACAYLFAFSQGKQAHAHIFKRGLV-SD----VYINNSLI 177 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li 177 (614)
.+... |++++|...+++....... .+.. ++..+...+...|+++.|.+.+.+..+.... .+ ..++..+.
T Consensus 23 ~~~~~-g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAIND-GNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHC-CCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455 7777777777776665411 1211 2334445556667777777777666542111 11 12244555
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cC--C--ChhhHHHH
Q 038206 178 HFYASCGHLDLANKVFDNMLE----------R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE--P--DGYTFQSI 241 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--p--d~~t~~~l 241 (614)
..|...|++++|...+++..+ + ....+..+...+...|++++|...+++.... .. + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 666667777776666655411 1 1224455556666667777777766665543 10 1 01223333
Q ss_pred HHHHHhhCchhHHHHHHHHHHHhccC-CCCccccHH--HHHHHHHHhcCCHHHHHHHHhcCCCCC-------HHHHHHHH
Q 038206 242 TSACAGLATLSLGMWAHAYILRHCDH-SLVTDVLVN--NSLIDMYCKCGSLDIARQVFESMPKRD-------LTSWNSII 311 (614)
Q Consensus 242 l~a~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li 311 (614)
...+...|+++.|...++........ +.++..... ...+..+...|++++|...++....++ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 44444455555555555444433100 110000000 012233445555555555555444221 11333444
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 038206 312 LGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m 330 (614)
..+...|++++|...+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555443
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=9.8e-08 Score=96.24 Aligned_cols=226 Identities=8% Similarity=-0.021 Sum_probs=161.7
Q ss_pred HHHHhhCchhHHHHHHHHHHHhccCCC--CccccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----CHHHHHHH
Q 038206 243 SACAGLATLSLGMWAHAYILRHCDHSL--VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-----R-----DLTSWNSI 310 (614)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~-----~~~~~~~l 310 (614)
..+...|+++.|...+..+.+.....- +....++..+...|...|+++.|...+++..+ + ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345788999999999999887521111 11355788899999999999999888776531 1 24578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhh---cCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCChhHHHHHH
Q 038206 311 ILGFALHGRAEAALKYFDRLVVE---ESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEY---NITPVLEHYGCLV 383 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~---~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li 383 (614)
...|...|++++|++.|++.... .+-.+ ...++..+...+...|++++|...++...+-. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999887221 12111 12567778888999999999999999886511 2233467788899
Q ss_pred HHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHhcCCC-CchhHHHHHH
Q 038206 384 DLLARAGNIDEALHLVSNM----PM--KPD-AVIWRSLLDACCKKHAS---VVLSEEVAKQVIESEGGI-CSGVYVLLSR 452 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 452 (614)
..|.+.|++++|.+.+++. +. .|. ...+..+-..+ ...++ ++.|...+++ .+..| ....+..+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly-~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY-KETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 9999999999999999875 11 233 33444444444 67777 6666666665 22221 2345678999
Q ss_pred HHhhcCChhhHHHHHHHHHh
Q 038206 453 VYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 453 ~~~~~g~~~~a~~~~~~m~~ 472 (614)
.|.+.|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999987653
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.91 E-value=9.7e-08 Score=88.57 Aligned_cols=203 Identities=9% Similarity=0.040 Sum_probs=126.8
Q ss_pred CChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHH
Q 038206 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNS 309 (614)
Q Consensus 233 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~ 309 (614)
.|...+......+...|+++.|...+..+.+. .-+++...+..+...|.+.|++++|...|++.. ..+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL---TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 34556666667777778888888888777776 322455566667777777788888777777654 224566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--------HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSPNS--------ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV---LEH 378 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 378 (614)
+...|...|++++|++.|++. .. ..|+. ..|..+-..+...|++++|...|+...+ ..|+ ...
T Consensus 82 l~~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~ 155 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEG-IK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHH-HH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHH
Confidence 777777777888887777776 33 22332 3355555666677777777777777743 3444 455
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 379 YGCLVDLLARAGNI--DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 379 ~~~li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
+..+...|...|+. ++|..+ . ..+...|..... ...+.+++|...+++..+..|. +..+...+..+
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~~---~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPL----A-SSNKEKYASEKA---KADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 66666666555432 222211 1 123344443332 3345678888888888888888 66665555443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.81 E-value=7.4e-08 Score=92.17 Aligned_cols=224 Identities=14% Similarity=0.162 Sum_probs=151.1
Q ss_pred HhhCchhHHHHHHHHHHHhccC----CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-CHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDH----SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK----------R-DLTSWNSI 310 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~l 310 (614)
...|+++.|...++...+.... ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888888777764211 2233467888899999999999999999887641 1 34678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhc------CCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-----CCCC-Chh
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEE------SFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEY-----NITP-VLE 377 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~ 377 (614)
...|...|++++|++.|.+. ... .-.|+ ..++..+...+...|++++|..+++...+.. +-.| ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987 432 11233 4677788888999999999999999887531 1123 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHhcCchHHHH------HHHHHHHHhcC
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNMP----------MKPD-AVIWRSLLDACCKKHASVVLSE------EVAKQVIESEG 440 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~~~~~~~a~------~~~~~~~~~~~ 440 (614)
.+..+...|.+.|++++|.+.+++.- ..+. ...|..+.... ...+....+. ..++......+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE-ESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH-HTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 78889999999999999999987751 1222 22333333333 3322222222 22211111112
Q ss_pred CCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
. ...++..+..+|.+.|++++|...+++..+
T Consensus 250 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 T-VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 345678899999999999999999988754
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.77 E-value=2.5e-07 Score=100.51 Aligned_cols=156 Identities=8% Similarity=0.087 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALK 143 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~ 143 (614)
..++.|-..|.+ |++++|.+.|++..+ | +..+|+.+-..|.+. |++++|++.|++..+.. | +...|..+..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~-g~~~eA~~~~~~Al~l~---P~~~~a~~nLg~ 85 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRIS---PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 677777777777 778888777776543 3 456677777777777 77777877777777765 4 3456777777
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHhcCChhHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--E-RSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A 220 (614)
++...|++++|.+.+++.++.. +.+...++.|..+|.+.|++++|.+.|++.. . .+...|..+...|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777777764 3345667777777777777777777777652 2 2456777777777777777777
Q ss_pred HHHHHHhhh
Q 038206 221 LKLFRRMQI 229 (614)
Q Consensus 221 ~~~~~~m~~ 229 (614)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.74 E-value=3.3e-07 Score=76.32 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=63.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~ 424 (614)
...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ .. ..+...|..+...+ ...|+
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 84 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQGD 84 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HHhcC
Confidence 33344444444444444444331 1123344444455555555555555555444 11 12344555555555 56666
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++.|.+.++++.+..|. +...+..++.+|.+.|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666655 555666666666666666666666666544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.72 E-value=2.6e-07 Score=88.34 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+|..+...|...|++++|..+|++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666666666666654
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.71 E-value=1.4e-06 Score=80.68 Aligned_cols=128 Identities=8% Similarity=-0.024 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|...-..+... |++++|++.|++..+.... ++...+..+..++...|++++|...++..++.. +.+..++..+..
T Consensus 8 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3344444444444 5555555555554444422 233333334444444455555555555444432 223344444445
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-Ch-------hHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 179 FYASCGHLDLANKVFDNMLE--R-SL-------VSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~--~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.|.+.|++++|...|++..+ | +. ..|..+...+.+.|++++|++.|++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 55555555555555544311 1 22 2344444445555555555555555443
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=2.2e-05 Score=81.49 Aligned_cols=349 Identities=11% Similarity=0.014 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCC-CchHHHHHHHHHHHc-CCCCCCcchHHHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVD-AKPQAIVLFQRMIEQ-GNVLPDKHTFPFALKA 144 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~-~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~ 144 (614)
.+|...+..+-.|+++.+..+|++... |++..|...+.-..+. + ..+....+|+..... |..+++...|...+.-
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-SQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-C----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 566777777666889999999988665 8888888887766665 4 345566777777654 4221355566666655
Q ss_pred HH----ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-------------CCHHHHHHHHhhcC----CCChhH
Q 038206 145 CA----YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC-------------GHLDLANKVFDNML----ERSLVS 203 (614)
Q Consensus 145 ~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------------g~~~~A~~~f~~m~----~~~~~~ 203 (614)
+. ..++.+.++.+|+.+++.....-..+|......-... +.+..|..+++... ..+...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 2456778888888888732211112222222211110 11222333332221 112334
Q ss_pred HHHHHHHHHhcCC-------hhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHH
Q 038206 204 WNVMIDAFVQFGE-------FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276 (614)
Q Consensus 204 ~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (614)
|...+.--..++. .+.+..+|++.....+-+...|...+.-+...|+.+.+..+++...+. +.+...+
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-----P~~~~l~ 249 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-----SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCcHHHH
Confidence 5444433221110 223455666655444444555555555556666677777777666653 2222222
Q ss_pred HHHHHHHHhcCCHHH-HHHHHhcCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 277 NSLIDMYCKCGSLDI-ARQVFESMP------------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 277 ~~li~~y~~~g~~~~-A~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
. .|+...+.++ ...+.+... ......|...+....+.+..+.|..+|.+. ...+ ++...|
T Consensus 250 ~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~ 322 (493)
T 2uy1_A 250 L----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVF 322 (493)
T ss_dssp H----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHH
T ss_pred H----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHH
Confidence 2 1221111000 011111100 001133444444444555566666666554 2221 122222
Q ss_pred H--HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 038206 344 V--GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421 (614)
Q Consensus 344 ~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 421 (614)
. +.+... ..++.+.|..+|+...+.++ -++..+...++...+.|+.+.|..+|++.. .....|...+.-- ..
T Consensus 323 i~~A~lE~~-~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE-~~ 396 (493)
T 2uy1_A 323 IYCAFIEYY-ATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYE-FM 396 (493)
T ss_dssp HHHHHHHHH-HHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHH-HH
T ss_pred HHHHHHHHH-HCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHH-HH
Confidence 2 111111 12245566666665555322 123334445555555566666666666552 2345555555443 55
Q ss_pred cCchHHHHHHHHHHH
Q 038206 422 HASVVLSEEVAKQVI 436 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~ 436 (614)
+|+.+.+..++++..
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=6.9e-06 Score=78.32 Aligned_cols=162 Identities=9% Similarity=-0.013 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----Ch
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-----VL 376 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~ 376 (614)
+..++..+...+...|+.++|++++.+. ...+..+ +...+..++..+.+.|+++.|.+.++.|.+ ..| +.
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~-i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d 174 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEG-IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDN 174 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccch
Confidence 3444445555566666666666666554 2322211 234444555556666666666666666643 233 12
Q ss_pred hHHHHHHHH--HHH--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh----------cCC
Q 038206 377 EHYGCLVDL--LAR--AGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES----------EGG 441 (614)
Q Consensus 377 ~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----------~~~ 441 (614)
.+...|..+ ... .+++.+|..+|+++ ...|+..+-..++.++ ...|++++|++.++.+.+. +|.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~-~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLH-LQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHH-HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHH-HHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 333333333 222 22566666666665 2224422333333344 5566666666666655544 244
Q ss_pred CCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|+.++..++..+...|+ +|.++++++.+
T Consensus 254 -~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 254 -KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp -HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 55555455555555554 56666666554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.67 E-value=5.1e-06 Score=78.63 Aligned_cols=206 Identities=9% Similarity=0.017 Sum_probs=117.7
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHH
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMPK--R-D---LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVG 345 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ 345 (614)
...+-.+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++......-.|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34445555566666666666666665542 2 2 445556666666666666666666665222111122 233344
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038206 346 VLSACNH--------RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417 (614)
Q Consensus 346 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 417 (614)
+..++.. .|++++|...|+.+.+...- +......+.......+.+. ..+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~---------------~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLA---------------RKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444545 66666666666666543211 1112111111110000000 113445556
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCCCC--chhHHHHHHHHhhc----------CChhhHHHHHHHHHhCCCccCCCccEEE
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGGIC--SGVYVLLSRVYASA----------RRWNDVGLVRKLMTDKGVTKEPGCSSIE 485 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 485 (614)
+ ...|+++.|...++++++..|... ...+..+..+|... |++++|...+++..+.. |
T Consensus 158 ~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p-------- 226 (261)
T 3qky_A 158 Y-ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--P-------- 226 (261)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred H-HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--C--------
Confidence 6 889999999999999999988721 24677888888866 89999999999887632 2
Q ss_pred ECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhh
Q 038206 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519 (614)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 519 (614)
.++...++...+..+..++.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 244556666666666665543
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.66 E-value=1.2e-06 Score=83.14 Aligned_cols=202 Identities=9% Similarity=-0.009 Sum_probs=137.4
Q ss_pred CCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc---ccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----
Q 038206 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD---VLVNNSLIDMYCKCGSLDIARQVFESMPK--R---- 302 (614)
Q Consensus 232 ~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---- 302 (614)
+.+...+-.....+...|+++.|...+..+.+. .+.+ ...+..+...|.+.|++++|...|+...+ |
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345566777778889999999999999999875 2223 56788889999999999999999998752 3
Q ss_pred CHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 038206 303 DLTSWNSIILGFAL--------HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374 (614)
Q Consensus 303 ~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 374 (614)
....+..+..++.. .|++++|+..|++. ... .|+..... .+...+......
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~--~p~~~~~~-------------~a~~~~~~~~~~----- 146 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF-IDR--YPNHELVD-------------DATQKIRELRAK----- 146 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH-HHH--CTTCTTHH-------------HHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-HHH--CcCchhHH-------------HHHHHHHHHHHH-----
Confidence 24567777888888 99999999999998 442 34432111 111111111110
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhc----------CchHHHHHHHHHHHHhc
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKH----------ASVVLSEEVAKQVIESE 439 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~ 439 (614)
....+..+...|.+.|++++|...|++. ...|+ ...+..+..++ ... |++++|...++++++..
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~-~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY-IAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 0122456778888999999999988876 22233 34566666666 544 88899999999999998
Q ss_pred CCCCch---hHHHHHHHHhhcCCh
Q 038206 440 GGICSG---VYVLLSRVYASARRW 460 (614)
Q Consensus 440 ~~~~~~---~~~~l~~~~~~~g~~ 460 (614)
|+ +.. ....+...+.+.|++
T Consensus 226 p~-~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 PD-SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp TT-CTHHHHHHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHHh
Confidence 88 543 233444444444443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.65 E-value=7.6e-07 Score=86.09 Aligned_cols=234 Identities=11% Similarity=-0.004 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--C-CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASC--G-HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+|.+++.+..+.- ++....+ . .+ +. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~---~~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K---LF-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H---HH-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h---hc-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4666666666653 3222222 2 22 22 2 478888877664 5567888999999998887754
Q ss_pred ccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC
Q 038206 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMPK-----RD 303 (614)
Q Consensus 230 ~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~ 303 (614)
. + .+. |-+++ ..+++.+..+|.+.|++++|...|++..+ .+
T Consensus 66 ~--------------~----------------~~~---~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 66 Y--------------Q----------------KKA---GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp H--------------H----------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred H--------------H----------------HHh---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2 0 000 11111 23455566666666666666665554331 11
Q ss_pred ----HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhc----CCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 304 ----LTSWNSIILGFALH-GRAEAALKYFDRLVVEE----SFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 304 ----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
..+|+.+...|... |++++|+..|++. ... +-.+. ..++..+...+...|++++|...|+...+...-.
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 23566666677775 7777777777765 221 10001 2346666667777777777777777776521111
Q ss_pred CCh-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHHH--hcCchHHHHHHHHHHHHh
Q 038206 374 PVL-----EHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAV------IWRSLLDACCK--KHASVVLSEEVAKQVIES 438 (614)
Q Consensus 374 p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~ 438 (614)
+.. ..|..+..++...|++++|...|++. .+.|+.. .+..++.++ . ..++++.|...|+++.+.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCcc
Confidence 111 14556666777777777777777765 3344321 233344444 3 234556666665554443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.65 E-value=8.1e-07 Score=73.87 Aligned_cols=131 Identities=17% Similarity=0.272 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
.|..+...+...|++++|+.+|+++ .... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKA-LELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHH-HHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 4556666667777777777777766 3322 223455556666667777777777777776542 23345566677777
Q ss_pred HHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 386 LARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.+.|++++|.+.++++ ... .+..+|..+...+ ...|+++.|...++++.+..|.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHccHHHHHHHHHHHHccCCC
Confidence 77777777777777765 222 3566677777777 7778888888888887776654
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.59 E-value=2.7e-06 Score=82.18 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=43.8
Q ss_pred HHccCCcHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHH
Q 038206 145 CAYLFAFSQGKQAHAHIFKR----GLVSD-VYINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDA 210 (614)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~ 210 (614)
+...|++++|...+....+. |-.++ ..+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44456666666655555442 21111 34555566666666666666655554411 01 2345555566
Q ss_pred HHhc-CChhHHHHHHHHhhh
Q 038206 211 FVQF-GEFDSALKLFRRMQI 229 (614)
Q Consensus 211 ~~~~-g~~~~A~~~~~~m~~ 229 (614)
|... |++++|+..|++...
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH
Confidence 6664 666666666665543
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.55 E-value=5.8e-06 Score=76.32 Aligned_cols=182 Identities=10% Similarity=0.038 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK--RD----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVL 347 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll 347 (614)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++......-.|.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 444556667777888888888877652 32 2466667777888888888888888772222112221 1222222
Q ss_pred HHHhc------------------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 038206 348 SACNH------------------RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409 (614)
Q Consensus 348 ~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 409 (614)
.++.. .|+.++|...|+.+.+.+ +-+...+.++..+.. +..... .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~~~~~-----------~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LKDRLA-----------K 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HHHHHH-----------H
Confidence 33322 345566666666654321 111212111111000 000000 0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS---GVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
....+...+ ...|+++.|...|+++++..|+ ++ ..+..+..+|.+.|++++|.+.++.+...+.
T Consensus 149 ~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 YEYSVAEYY-TERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHH-HHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112334455 7889999999999999999888 44 4678899999999999999999998887654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=1.5e-05 Score=75.92 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=122.0
Q ss_pred CccccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-----c
Q 038206 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-----RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-----N 339 (614)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-----~ 339 (614)
.++......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++| +. ..| +
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~-~~--~~~d~~~~~ 173 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY-TN--AIEDTVSGD 173 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCccccccc
Confidence 34445556788889999999999999987632 35677888899999999999999999999 65 466 3
Q ss_pred HHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------
Q 038206 340 SITFVGVLSACN----HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM---------- 404 (614)
Q Consensus 340 ~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---------- 404 (614)
..+...+..++. ..++..+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 566666666632 234899999999998653 355333445555899999999999998764 21
Q ss_pred CC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 405 KP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 405 ~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
.| |..+...+|... ...|+ .|.++++++.+..|+ ++..
T Consensus 251 ~p~~~~~LaN~i~l~-~~lgk--~a~~l~~qL~~~~P~-hp~i 289 (310)
T 3mv2_B 251 VLYKPTFLANQITLA-LMQGL--DTEDLTNQLVKLDHE-HAFI 289 (310)
T ss_dssp HSSHHHHHHHHHHHH-HHTTC--TTHHHHHHHHHTTCC-CHHH
T ss_pred CCCCHHHHHHHHHHH-HHhCh--HHHHHHHHHHHhCCC-ChHH
Confidence 24 455554555544 45565 889999999999988 5543
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.54 E-value=2.8e-07 Score=79.14 Aligned_cols=140 Identities=11% Similarity=0.003 Sum_probs=103.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
.+...|+.++|+..+... . ...|+. ..+..+-..|.+.|++++|.+.|+...+. -+-+...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a-~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGS-T--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHH-S--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHh-c--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344567788888888765 2 234443 44556777788889999999888888753 22367788888889999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 392 IDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEE-VAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 392 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+++|...|++. .+.| +..+|..+...+ ...|+.+++.+ .++++++..|. ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELL-CKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999888876 4455 466788887777 78888766555 46889999998 88888888877777764
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=3.2e-05 Score=74.56 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=115.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSI----TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV----LEHYGC 381 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 381 (614)
.+..+...|++++|.+++++........|+.. .+..+...+...+++++|...|+...+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888899999999888722223334432 2334555667778899999999888763222223 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----CchhH
Q 038206 382 LVDLLARAGNIDEALHLVSNMP-------M-KPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----CSGVY 447 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~ 447 (614)
+...|...|++++|...|++.- . .|. ..+|..+...| ...|++++|...++++++..+.. -..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y-~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL-YLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8899999999999988887651 1 122 23677788888 89999999999999998764331 14678
Q ss_pred HHHHHHHhhcCC-hhhHHHHHHHHH
Q 038206 448 VLLSRVYASARR-WNDVGLVRKLMT 471 (614)
Q Consensus 448 ~~l~~~~~~~g~-~~~a~~~~~~m~ 471 (614)
..+..+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 699999887764
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.46 E-value=1.4e-05 Score=82.99 Aligned_cols=355 Identities=10% Similarity=0.002 Sum_probs=201.2
Q ss_pred ChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC-cHHHHHHHHH
Q 038206 82 DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA-FSQGKQAHAH 160 (614)
Q Consensus 82 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~ 160 (614)
+++.|+.+|+.+. ..+-. |.++.+..+|++....- |+...|...++-..+.++ .+...++|+.
T Consensus 10 ~i~~aR~vyer~l-----------~~~P~--~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHAR-----------RLYMS--KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHH-----------HHHHT--TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHH-----------HHCCC--CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3667777776653 22222 67999999999998854 888888888887766653 4567788888
Q ss_pred HHHh-CCCC-chhHHHHHHHHHH----hcCCHHHHHHHHhhcCC-C--Ch-hHHHHHHHHHH-------------hcCCh
Q 038206 161 IFKR-GLVS-DVYINNSLIHFYA----SCGHLDLANKVFDNMLE-R--SL-VSWNVMIDAFV-------------QFGEF 217 (614)
Q Consensus 161 ~~~~-g~~~-~~~~~~~li~~~~----~~g~~~~A~~~f~~m~~-~--~~-~~~~~li~~~~-------------~~g~~ 217 (614)
++.. |..+ +..+|...+..+. ..|+++.+.++|++... | +. ..|.....--. ..+.+
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 7774 5433 5677888777654 34678899999998733 2 11 12222211100 01123
Q ss_pred hHHHHHHHHhhhcc-CCChhhHHHHHHHHHhh--Cc-----hhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCH
Q 038206 218 DSALKLFRRMQILF-EPDGYTFQSITSACAGL--AT-----LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289 (614)
Q Consensus 218 ~~A~~~~~~m~~~~-~pd~~t~~~ll~a~~~~--~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 289 (614)
..|..+++.+.... ..+...|...+.--... +. .+.+..+++.++.. .+.+..+|-..+..+.+.|++
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCH
Confidence 33444444443321 11222333333322111 10 23345677777764 344567787788888888889
Q ss_pred HHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---c-----CC-Cc--cHHHHHHHHHHHhccCCH
Q 038206 290 DIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVE---E-----SF-SP--NSITFVGVLSACNHRGMV 356 (614)
Q Consensus 290 ~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~-----g~-~p--~~~t~~~ll~a~~~~g~~ 356 (614)
+.|..+|++.. ..+...|. .|+...+.++. ++.+... . +. .+ ....|...+....+.+..
T Consensus 230 ~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 230 EKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 88888887543 22333333 22222111222 2222010 0 00 11 123455555555566778
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG-NIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+.|+.+|+.. +..+ .+...|...+.+-.+.| +.+.|.++|+.. ..-| +...|...+.-. ...|+.+.|..+|+
T Consensus 303 ~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e-~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 303 ELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL-LRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 8898888887 3211 23444443333333334 588888888765 1112 344566666655 77788888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++ +. ....|...+..-...|+.+.+.++++++.+
T Consensus 379 r~----~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RL----EK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HS----CC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HH----HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 86 23 356677777777778888888887777653
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=2.2e-06 Score=75.71 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=114.2
Q ss_pred HHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH--
Q 038206 71 YSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA-- 144 (614)
Q Consensus 71 ~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~-- 144 (614)
...+...+.. |++++|...|++..+ .+...|..+...+.+. |++++|+..|++..... |+. .+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~---p~~-~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEY---QDN-SYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGGG---CCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhcc---CCh-HHHHHHHHHH
Confidence 3445555666 999999999999875 4567788888899999 99999999999887765 533 23332221
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhHHHHHHHHHHhcCChhH
Q 038206 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R---SLVSWNVMIDAFVQFGEFDS 219 (614)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~ 219 (614)
+...+....+...++..++.. +.+...+..+...|...|++++|...|++..+ | +...|..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233445788888888765 33577888899999999999999999988743 2 24578889999999999999
Q ss_pred HHHHHHHhhh
Q 038206 220 ALKLFRRMQI 229 (614)
Q Consensus 220 A~~~~~~m~~ 229 (614)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=6.2e-06 Score=72.76 Aligned_cols=156 Identities=8% Similarity=-0.018 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH-
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC- 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~- 350 (614)
....+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++. .. ..|+.. +..+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a-~~--~~p~~~-~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI-PL--EYQDNS-YKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC-CG--GGCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh-hh--ccCChH-HHHHHHHHH
Confidence 455566778888889999888888773 36677888888888888888888888876 32 233322 22111101
Q ss_pred -hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhcCchHHH
Q 038206 351 -NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 351 -~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~~a 428 (614)
...+....+...++...+ ..| +...+..+...+ ...|++++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~-----------------------------------~~P~~~~~~~~la~~~-~~~g~~~~A 127 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELA-----------------------------------ANPDNFELACELAVQY-NQVGRDEEA 127 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHH-----------------------------------HSTTCHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHhhcccchHHHHHHHHHH-----------------------------------hCCCCHHHHHHHHHHH-HHcccHHHH
Confidence 010011112333333322 123 345555555555 666666666
Q ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 429 EEVAKQVIESEGGI-CSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 429 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
...++++++..|.+ +...+..+..+|...|+.++|...+++.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 66666666666542 2345666666666666666666666544
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.43 E-value=5.1e-06 Score=90.44 Aligned_cols=168 Identities=13% Similarity=-0.034 Sum_probs=117.3
Q ss_pred HccCCcHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhc
Q 038206 146 AYLFAFSQGKQAHAHIF--------KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQF 214 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 214 (614)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 322 33556777778888888888888888887633 3566788888888888
Q ss_pred CChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHH
Q 038206 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294 (614)
Q Consensus 215 g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 294 (614)
|++++|++.|++..+..+-+...+..+-.++...|++++ ...++.+.+. -+.+...+..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST----NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh----CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888776534455666777777777777777 7777777765 23345677777788888888888888
Q ss_pred HHhcCCC--C-CHHHHHHHHHHHHhcCC
Q 038206 295 VFESMPK--R-DLTSWNSIILGFALHGR 319 (614)
Q Consensus 295 ~~~~m~~--~-~~~~~~~li~~~~~~g~ 319 (614)
.|++..+ | +...|..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8887763 3 34556666666544443
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=1.1e-05 Score=78.48 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
.+..+...+...|++++|...|++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444455555555555555554
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.38 E-value=8.2e-06 Score=78.49 Aligned_cols=170 Identities=8% Similarity=-0.012 Sum_probs=111.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 293 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
.+.+......+...+..+...+.+.|++++|...|++. .. ..|+ ...+..+...+...|++++|...++.+..
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--- 179 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDA-WQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--- 179 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH-HH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---
Confidence 33333333334455556666677777777777777766 33 2343 34555666677777777777777776643
Q ss_pred CCCChhHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC--chh
Q 038206 372 ITPVLEHYGCL-VDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC--SGV 446 (614)
Q Consensus 372 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 446 (614)
..|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+ ...|++++|...++++++..|. + ...
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l-~~~g~~~~A~~~l~~~l~~~p~-~~~~~a 257 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL-HQVGRNEEALELLFGHLRXDLT-AADGQT 257 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-GGGGHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH-HHcccHHHHHHHHHHHHhcccc-cccchH
Confidence 23443322222 22345566666677766655 2234 566777777777 8888888888888888888887 4 667
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHH
Q 038206 447 YVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
+..|+.+|...|+.++|...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 888888888888888888877654
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.38 E-value=7.1e-06 Score=89.30 Aligned_cols=182 Identities=10% Similarity=-0.066 Sum_probs=147.9
Q ss_pred HcCCCCchHHHHHHHHHH--------HcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 038206 109 ARSVDAKPQAIVLFQRMI--------EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 109 ~~~~~~~~~A~~~~~~m~--------~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
... |++++|++.|++.. +.. + .+...+..+..++...|++++|.+.++.+++.. +.+...+..+..+|
T Consensus 402 ~~~-~~~~~A~~~~~~al~~~~~~~~~~~-p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVL-SQPVQTLDSLRAARHGALDADGVDF-S-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTT-CCHHHHHHHHHHHHTC-------CC-T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccc-cCHHHHHHHHHHhhhhccccccccc-c-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 566 99999999999998 443 2 355678888889999999999999999999875 44677889999999
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHH
Q 038206 181 ASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWA 257 (614)
Q Consensus 181 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~ 257 (614)
.+.|++++|...|++.. ..+...|..+...|.+.|++++ ++.|++..+.-+-+...+..+..++...|+.++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999873 2367789999999999999999 9999998776555677888999999999999999999
Q ss_pred HHHHHHhccCCCCc-cccHHHHHHHHHHhcC--------CHHHHHHHHhcCC
Q 038206 258 HAYILRHCDHSLVT-DVLVNNSLIDMYCKCG--------SLDIARQVFESMP 300 (614)
Q Consensus 258 ~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g--------~~~~A~~~~~~m~ 300 (614)
++.+.+. .| +...+..+..+|...| ++++|.+.+..+.
T Consensus 557 ~~~al~l-----~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPT-----SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTT-----STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhccc-----CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9887754 34 3567777777776644 3777888887775
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.37 E-value=5e-06 Score=88.67 Aligned_cols=159 Identities=12% Similarity=0.077 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHH
Q 038206 286 CGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 286 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++. .. ..|+ ...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG-LA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788999999998763 36788999999999999999999999987 44 3454 5778888889999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc---CchHHHHHHHHHHH
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH---ASVVLSEEVAKQVI 436 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~---~~~~~a~~~~~~~~ 436 (614)
.++...+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+ ... |+.++|.+.+++++
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR-RRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhccccHHHHHHHHHHHH
Confidence 99999763 2336788999999999999999999999887 3344 577888888888 888 99999999999999
Q ss_pred HhcCCCCchhHHHHH
Q 038206 437 ESEGGICSGVYVLLS 451 (614)
Q Consensus 437 ~~~~~~~~~~~~~l~ 451 (614)
+.+|. +...|..+.
T Consensus 156 ~~~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVG-AVEPFAFLS 169 (568)
T ss_dssp HHTCC-CSCHHHHTT
T ss_pred hcCCc-ccChHHHhC
Confidence 99998 677776654
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.36 E-value=9.1e-06 Score=86.63 Aligned_cols=146 Identities=11% Similarity=-0.029 Sum_probs=102.1
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAAL 324 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 324 (614)
.|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46778888888887764 23356788888889999999999999998765 236778888888999999999999
Q ss_pred HHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHH
Q 038206 325 KYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA---GNIDEALHLVS 400 (614)
Q Consensus 325 ~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~ 400 (614)
+.|++. ... .|+ ...+..+..++...|++++|.+.++...+. -+.+...+..+...+... |+.++|.+.++
T Consensus 78 ~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 78 VLLQQA-SDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHH-HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHH-Hhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999887 442 343 467777888889999999999999988763 233567788888889888 99999998888
Q ss_pred hC
Q 038206 401 NM 402 (614)
Q Consensus 401 ~m 402 (614)
+.
T Consensus 153 ~a 154 (568)
T 2vsy_A 153 AA 154 (568)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.1e-05 Score=73.29 Aligned_cols=132 Identities=9% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhc
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNH 352 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~ 352 (614)
+.+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++. .. +.|+ ..++..+..++..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--cCCCCHHHHHHHHHHHHH
Confidence 345666666666666666666554 225566666666666677777777777665 33 2333 2444444444433
Q ss_pred cCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038206 353 RGM--VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSL 414 (614)
Q Consensus 353 ~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 414 (614)
.|. .+.+...+.... ...|....+..+...+...|++++|...|++. ...|+......+
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 332 223333333331 11122222233344455566777777777664 555665544443
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=2.8e-06 Score=72.77 Aligned_cols=100 Identities=7% Similarity=-0.053 Sum_probs=82.0
Q ss_pred CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 372 ITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 372 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+-.++ ...|++++|...|+++++..|. ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~-~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY-QIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 444 3556777778888889999998888877 3345 577788887777 8889999999999999999998 888999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+..+|.+.|++++|...|++..+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999887764
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=8.3e-07 Score=76.20 Aligned_cols=120 Identities=9% Similarity=-0.055 Sum_probs=98.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
..+...|++++|...+.... ...| +...+-.+...|.+.|++++|++.|++. .+.| +..+|..+-..+ ...|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY-ELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTC
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCc
Confidence 34566788999999888764 3344 3445667899999999999999999987 4455 677888888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHH-HHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV-RKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 472 (614)
++.|+..|+++++..|. ++.+|..+..+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999987765 466554
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.34 E-value=1.5e-05 Score=72.42 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=70.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh
Q 038206 176 LIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 252 (614)
+..+|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------- 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---------------------- 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------
Confidence 5555556666666666665542 124455555666666666666666666555432
Q ss_pred HHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC--HHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS--LDIARQVFESMPKRDLT--SWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
-+.+..++..+...|...|+ .+.+...|+....++.. .|..+-.++...|++++|+..|+
T Consensus 118 ----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 118 ----------------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 12234455556665554433 34556666666655543 23334445566778888888888
Q ss_pred HHhhhcCCCccHHHHHHH
Q 038206 329 RLVVEESFSPNSITFVGV 346 (614)
Q Consensus 329 ~m~~~~g~~p~~~t~~~l 346 (614)
+. .. +.|+......+
T Consensus 182 ~a-l~--l~P~~~~~~~l 196 (208)
T 3urz_A 182 KV-IL--RFPSTEAQKTL 196 (208)
T ss_dssp HH-TT--TSCCHHHHHHH
T ss_pred HH-HH--hCCCHHHHHHH
Confidence 66 33 56665544433
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.33 E-value=3.9e-05 Score=69.96 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCChh
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG----MVSEGRDYFDVMINEYNITPVLE 377 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~ 377 (614)
.+..++..+-..|...++.++|++.|++. ...| +...+..+-..|.. + +.++|..+|+...+. | +..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKA-AAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHH
Confidence 35566666666666777777777777766 4443 33444445555555 5 677777777777542 2 455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCCch
Q 038206 378 HYGCLVDLLAR----AGNIDEALHLVSNM-PMKPD---AVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 378 ~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
.+..|..+|.. .+++++|.++|++. ...|+ ...+..|-..+ .. .++.++|...|++..+.+ . ++.
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y-~~g~g~~~d~~~A~~~~~~A~~~~-~-~~~ 163 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY-ASGVHGPEDDVKASEYFKGSSSLS-R-TGY 163 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-HHTSSSSCCHHHHHHHHHHHHHTS-C-TTH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHcC-C-CHH
Confidence 66667677765 67788888887776 32332 56666666666 55 567888888888887772 2 455
Q ss_pred hHHHHHHHHhhc-C-----ChhhHHHHHHHHHhCCC
Q 038206 446 VYVLLSRVYASA-R-----RWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 446 ~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 475 (614)
.+..|..+|... | ++++|...+++..+.|.
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 677777777653 3 78888888887766654
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.32 E-value=1.9e-05 Score=75.84 Aligned_cols=157 Identities=9% Similarity=-0.015 Sum_probs=87.6
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHH-HHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSW-NVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~ 210 (614)
+...+..+...+...|++++|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+.... ......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555556666777777777777776654 23455666666777777777777777776643 222211 112223
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
+.+.++.++|+..|++....- +.+...+..+...|...|+++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~--------------------------------------P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN--------------------------------------PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC--------------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcC--------------------------------------CccHHHHHHHHHHHHHcccHH
Confidence 445556666666665554332 223445555555555556666
Q ss_pred HHHHHHhcCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 291 IARQVFESMP--KR---DLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 291 ~A~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
+|...|.++. .| +...+..+...|...|+.++|...|++
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 6555555544 12 144556666666666666666655554
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.31 E-value=1.7e-05 Score=77.15 Aligned_cols=222 Identities=12% Similarity=0.095 Sum_probs=145.5
Q ss_pred cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 293 (614)
.|++++|.+++++..+..+.. + +...++++.+... |+.....|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---~------~~~~~~~~~A~~~------------------~~~a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---F------MKWKPDYDSAASE------------------YAKAAVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---S------SSCSCCHHHHHHH------------------HHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---c------cCCCCCHHHHHHH------------------HHHHHHHHHHcCCHHHHH
Confidence 466777888777776542211 0 0012444444443 444456677889998888
Q ss_pred HHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hcCCCcc-HHHHHHHHHHHhccCCHHHHH
Q 038206 294 QVFESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVV---EESFSPN-SITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 294 ~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 360 (614)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++... ..|-.+. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88776541 11 35788888899999999999999987621 1121111 3567777788888 9999999
Q ss_pred HHHHHHHHhcC---CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhcCchHHH
Q 038206 361 DYFDVMINEYN---ITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PM---KPD----AVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 361 ~~~~~~~~~~~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~~a 428 (614)
..|+...+-.. -.+ ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+ ...|+++.|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ-LHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-HHcCCHHHH
Confidence 99998765321 111 1467888999999999999999999876 11 122 22555566666 777999999
Q ss_pred HHHHHHHHHhcCCCCc----hhHHHHHHHHhhcCChhhHHHH
Q 038206 429 EEVAKQVIESEGGICS----GVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
...+++.+ ..|.... .....++.+| ..|+.+.+..+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 7765211 1233455555 56776665553
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.29 E-value=2.2e-05 Score=71.38 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
.+...|...|++++|...|++...++...|..+...|...|++++|++.|++. .... +.+...+..+..++...|+++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-ccchHHHHHHHHHHHHcccHH
Confidence 34445555555555555555555555555555555555555555555555544 2211 112233444444444455555
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
+|...|+...+...-.+... +...| +...|+ ...|..+...+ ...|+++.|...++++.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHH-HHccCHHHHHHHHHHHH
Confidence 55554444433111000000 00000 012222 35666677777 88889999999999888
Q ss_pred HhcCC
Q 038206 437 ESEGG 441 (614)
Q Consensus 437 ~~~~~ 441 (614)
+..|.
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 88776
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.29 E-value=2.7e-05 Score=70.78 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHH
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILG 313 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 313 (614)
.+..+...+...|+++.|...+..+ +.|+..++..+...|.+.|++++|...|++.. ..+...|..+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3445566778899999999888755 35577899999999999999999999998765 3477899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhh
Q 038206 314 FALHGRAEAALKYFDRLVVE 333 (614)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~ 333 (614)
|...|++++|++.|++. ..
T Consensus 81 ~~~~~~~~~A~~~~~~a-l~ 99 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEA-LI 99 (213)
T ss_dssp HHHTTCHHHHHHHHHHH-HH
T ss_pred HHHcccHHHHHHHHHHH-HH
Confidence 99999999999999988 44
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.27 E-value=1.1e-05 Score=66.73 Aligned_cols=113 Identities=5% Similarity=-0.053 Sum_probs=72.8
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWR 412 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 412 (614)
+.|+. ..+...-..+.+.|++++|.+.|+..++. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 44555566667777777777777776542 2235666677777777777777777777665 3333 455666
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
.+..++ ...|++++|.+.|+++++..|. +...+..|.+
T Consensus 86 ~lg~~~-~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACL-VAMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 666666 7777777777777777777777 6665555443
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.27 E-value=0.00073 Score=64.88 Aligned_cols=132 Identities=8% Similarity=-0.041 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccC--CcHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLF--AFSQGKQAHAHIFKRGLVSDVYINNSLIHFY----ASC-- 183 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~-- 183 (614)
...++|+.++..++..+ |+.. .|+.--..+...+ +++++++.++.++.... -+..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccc
Confidence 45567888888888776 5544 3555555666666 78888888888877653 2444555444444 444
Q ss_pred -CCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChh--HHHHHHHHhhhccCCChhhHHHHHHHHHhh
Q 038206 184 -GHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFD--SALKLFRRMQILFEPDGYTFQSITSACAGL 248 (614)
Q Consensus 184 -g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~ 248 (614)
+++++++.+++.+. .+|..+|+--...+.+.|.++ ++++.++++.+.-+-|-..|+.-.......
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 67788888887773 345667777666777777777 888888887765344444554433333333
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=2.1e-05 Score=64.05 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 418 (614)
..+..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44455555566666666666666666542 1234556666667777777777777776665 11 23556667777777
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
...|+++.|...++++.+..|. +...+..+..++...
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 -YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred -HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 7777888888888888777777 666666666655543
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.24 E-value=4.5e-05 Score=70.27 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=31.5
Q ss_pred CChhHHHHHHhcCCC--CCh----hhHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 81 ADLDYAFRVFYQIEN--PNS----FTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~~~----~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
|++++|...|+++.. |+. ..+..+..++.+. |++++|+..|++..+..
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHC
Confidence 777777777776643 321 3455566667777 77777777777777665
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.23 E-value=2.5e-05 Score=67.61 Aligned_cols=126 Identities=6% Similarity=-0.101 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACC 419 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 419 (614)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~- 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN- 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-
Confidence 3445555666777777777777776552 2235667777777888888888888877765 2233 566777777777
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHH--HHHHHhhcCChhhHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVL--LSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
...|++++|...++++.+..|. +...+.. ++..+.+.|++++|.+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888999999999999988887 6666644 3444778899999988887654
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.23 E-value=6.5e-05 Score=72.35 Aligned_cols=164 Identities=10% Similarity=-0.001 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCC--h
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNS----ITFVGVLSACNHRGMVSEGRDYFDVMINEYNI--TPV--L 376 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 376 (614)
.+...+..+...|++++|++.+.+. .... ..++. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNE-LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566777888888888888766 3322 11211 22333445567778889998888887642111 111 4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC----
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM----PMKPD-----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---- 443 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 443 (614)
..++.+...|...|++++|...|++. ...|+ ..++..+...| ...|++++|...+++.++.....+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y-~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL-YLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH-HHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 47888888999999999988888765 11222 25777788888 899999999999999887642211
Q ss_pred -chhHHHHHHHHhhcCChhhH-HHHHHHHH
Q 038206 444 -SGVYVLLSRVYASARRWNDV-GLVRKLMT 471 (614)
Q Consensus 444 -~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 471 (614)
..+|..+..+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46778899999999999999 77676654
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=2.3e-05 Score=64.48 Aligned_cols=117 Identities=9% Similarity=-0.039 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDA 417 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 417 (614)
...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666677777777777777777652 2335667777778888888888888877765 2233 46677777777
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
+ ...|+++.|...++++.+..|. +...+..+..++.+.|++
T Consensus 90 ~-~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 L-SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred H-HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 7 8888899999999998888887 777888888888877765
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.19 E-value=1.1e-05 Score=66.73 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 372 ITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 372 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++ ...|++++|+..++++++.+|. +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACL-TKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHH-HhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 4553 456777888999999999999999986 4445 677888888888 9999999999999999999999 899999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+|...|++++|.+.|++..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998776
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.18 E-value=0.0001 Score=70.90 Aligned_cols=147 Identities=7% Similarity=-0.058 Sum_probs=74.0
Q ss_pred CChhHHHHHHhcCCC-----CCh---h-hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHc
Q 038206 81 ADLDYAFRVFYQIEN-----PNS---F-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK----HTFPFALKACAY 147 (614)
Q Consensus 81 g~~~~A~~~f~~m~~-----~~~---~-~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~ 147 (614)
|++++|...+++... |+. . .+..+...+... +++++|+..|++........++. .+++.+...+..
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 666666666655432 110 1 122233334444 56666666666666533221221 135555556666
Q ss_pred cCCcHHHHHHHHHHHHh-----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-----ChhHHHHHHHHHH
Q 038206 148 LFAFSQGKQAHAHIFKR-----GLVSD-VYINNSLIHFYASCGHLDLANKVFDNMLE----R-----SLVSWNVMIDAFV 212 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~-----~~~~~~~li~~~~ 212 (614)
.|++++|...++.+++. +..+. ..++..+...|.+.|++++|...+++..+ . -..+|..+...|.
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 66666666666665531 11111 22455566666666666666666554411 0 0335555566666
Q ss_pred hcCC-hhHHHHHHHHhh
Q 038206 213 QFGE-FDSALKLFRRMQ 228 (614)
Q Consensus 213 ~~g~-~~~A~~~~~~m~ 228 (614)
+.|+ +++|++.|++..
T Consensus 248 ~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTCCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 6663 366666555543
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.16 E-value=6.7e-05 Score=68.37 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=86.4
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC----CcHHHHHHHHHHHHhCCCCchh
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF----AFSQGKQAHAHIFKRGLVSDVY 171 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~ 171 (614)
.++.++..+-..|... +++++|++.|++..+.| +...+..+-..+.. + +.++|.+.++...+.| ++.
T Consensus 16 g~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3455555555555555 66666666666665543 33444445555554 4 6666666666665544 444
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhH
Q 038206 172 INNSLIHFYAS----CGHLDLANKVFDNMLERS-----LVSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTF 238 (614)
Q Consensus 172 ~~~~li~~~~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~ 238 (614)
.+..|-.+|.. .++.++|...|++..+.+ ..++..|...|.. .+++++|+..|++.... .++...+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 55555556655 566666666666654432 3566666666666 55666666666665443 2233333
Q ss_pred HHHHHHHHhh-C-----chhHHHHHHHHHHHh
Q 038206 239 QSITSACAGL-A-----TLSLGMWAHAYILRH 264 (614)
Q Consensus 239 ~~ll~a~~~~-~-----~~~~~~~~~~~~~~~ 264 (614)
..+-..+... + +.+.|...++...+.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3333333221 1 445555555554444
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.16 E-value=4.1e-05 Score=73.77 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC---CCcc--H
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP---KRDL------TSWNSIILGFALHGRAEAALKYFDRLVVEES---FSPN--S 340 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g---~~p~--~ 340 (614)
.+...+..+...|++++|.+.+++.. ..+. ..+..+...+...|++++|+..+++. .... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-LNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH-HTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCchHHHH
Confidence 44556778889999999998887543 1111 23444556677889999999999887 3321 1122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C------CCCC-
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNM-P------MKPD- 407 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p~- 407 (614)
.+++.+...|...|++++|..+|+...+ ..+..+ ...++..+...|.+.|++++|.+.+++. . ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888899999999999999998873 222222 1257888999999999999999998875 1 1111
Q ss_pred HHHHHHHHHHHHHhcCchHHH-HHHHHHHHHh
Q 038206 408 AVIWRSLLDACCKKHASVVLS-EEVAKQVIES 438 (614)
Q Consensus 408 ~~~~~~ll~~~~~~~~~~~~a-~~~~~~~~~~ 438 (614)
..+|..+...+ ...|+.++| ...++++...
T Consensus 236 ~~~~~~lg~~y-~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECL-RKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHH
Confidence 56777787787 899999999 7778887754
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.12 E-value=3.6e-05 Score=63.59 Aligned_cols=114 Identities=10% Similarity=0.083 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 418 (614)
..+..+...+...|++++|...|+...+ -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3444444445555555555555555432 11223444555555555555555555555544 1122 445555555566
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
...|++++|.+.++++.+..|. +...+..+..++.+.|
T Consensus 95 -~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 -EAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred -HHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 6667777777777777776666 5566666666665544
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.11 E-value=9.2e-06 Score=69.35 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=79.2
Q ss_pred CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 372 ITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 372 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+-.++ ...|++++|...|+++++..|. ++..+.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~-~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIX-EPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTT-CTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CchHHH
Confidence 344 4556667778888888888888888876 3334 677777777777 8888999999999999999888 888888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+|...|++++|...+++..+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999998887765
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=0.00011 Score=69.14 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--SITFVGVLSAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~a~ 350 (614)
+.-.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+.. .... .|. ...+..+-.++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a-~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSA-GKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTG-GGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHh-hccC-CcccHHHHHHHHHHHH
Confidence 34456677788888899988888886 343335555556777888888888888754 2211 221 23455566677
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...|++++|...|+.... ....|. .........++.+.|+.++|...|+++
T Consensus 182 ~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 182 ANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778888888888877753 122143 234445556666777777777777665
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=3.2e-05 Score=76.18 Aligned_cols=144 Identities=12% Similarity=-0.020 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 382 (614)
+...|..+...|.+.|++++|+..|++. ... .|+...+ ..+.+.++- . -....|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~A-l~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKI-VSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHH
Confidence 3456666677777777777777777765 321 2221100 001111100 0 014577788
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 383 VDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
..+|.+.|++++|++.+++. ...| +...|..+-.++ ...|++++|+..|+++++..|. +...+..+..++.+.|++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH-LAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 88889999999999888876 3334 677888888888 9999999999999999999999 888999999999999999
Q ss_pred hhH-HHHHHHHH
Q 038206 461 NDV-GLVRKLMT 471 (614)
Q Consensus 461 ~~a-~~~~~~m~ 471 (614)
++| ...++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988 44555553
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.09 E-value=2.3e-05 Score=70.56 Aligned_cols=149 Identities=13% Similarity=-0.006 Sum_probs=107.0
Q ss_pred CChhHHHH---HHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC----CCCCCcchHHHHHHHHHccCCcHH
Q 038206 81 ADLDYAFR---VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG----NVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 81 g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~----~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
|++++|.+ .+..-+......|+.+-..+... |++++|+..|++..... .......++..+...+...|++++
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88999998 66554444566788888888888 99999999998887621 110123456667777888899999
Q ss_pred HHHHHHHHHHh----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChh
Q 038206 154 GKQAHAHIFKR----GLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 154 a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~ 218 (614)
|...+.+..+. +-.+ ...++..+...|...|++++|...|++..+ .+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99888887664 2111 244577788888899999999888877521 12 224577788888899999
Q ss_pred HHHHHHHHhhhc
Q 038206 219 SALKLFRRMQIL 230 (614)
Q Consensus 219 ~A~~~~~~m~~~ 230 (614)
+|...+++....
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.06 E-value=8.3e-06 Score=78.17 Aligned_cols=188 Identities=9% Similarity=-0.036 Sum_probs=114.4
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHH
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLS 348 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~ 348 (614)
...+..+...|.+.|++++|...|++.. .| +...|..+...|.+.|++++|+..+++. .. +.|+ ...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA-LE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TT--SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HH--hCCCCHHHHHHHHH
Confidence 3455666777777888888888777654 23 6677777778888888888888888766 33 3443 356666777
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCch
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITP---VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 425 (614)
++...|++++|...|....+...-.+ ....+..+ ...+...+.. .......++...... +..+ . .|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~-l~~l-~-~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSY-LTRL-I-AAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHH-HHHH-H-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHH-HHHH-H-HHHH
Confidence 77888888888888877654211001 11111111 1122111111 122222233333333 3333 3 5788
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc-CChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASA-RRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 473 (614)
++|.+.++++.+..|. +......+...+.+. +++++|.++|.+..+.
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888887776 555555666666665 7788999999887653
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=4.5e-05 Score=72.98 Aligned_cols=187 Identities=10% Similarity=0.001 Sum_probs=107.9
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER---SLVSWNVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~ 210 (614)
+...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...++...+. +...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456666667777788888888888777764 335667777888888888888888888876442 45678888888
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
|.+.|++++|+..|++.....+-+...+...+....... .. ..+...... ..+.+..+...+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~---~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KK-KRWNSIEER---RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HH-HHHHHHHHT---CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HH-HHHHHHHHH---HHhhhHHHHHHHHHHH--HHHHH
Confidence 888899999988888876541101111111111111100 11 111112222 3444555544443332 57777
Q ss_pred HHHHHHhcCCC--CC-HHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 038206 291 IARQVFESMPK--RD-LTSWNSIILGFALH-GRAEAALKYFDRL 330 (614)
Q Consensus 291 ~A~~~~~~m~~--~~-~~~~~~li~~~~~~-g~~~~A~~l~~~m 330 (614)
+|.+.++...+ |+ ......+-..+.+. +..++|.++|.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777766542 32 22233333333333 4566777777665
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.05 E-value=1.8e-05 Score=69.77 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=88.1
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHhcCch--
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDA-CCKKHASV-- 425 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~~~-- 425 (614)
...|++++|...++...+. -+.+...+..+...|...|++++|...|++. ...| +...|..+... + ...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~-~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLY-YQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH-HHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhcCCcch
Confidence 4567777888888777653 2345677888888888888888888888776 2223 56667767666 5 677887
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.|...++++++..|. +...+..+..+|...|++++|...+++..+.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8899999999888888 7888888888899999999999998887764
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.05 E-value=9e-05 Score=63.96 Aligned_cols=126 Identities=9% Similarity=0.003 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|..+...+... |++++|...|++..... + .+...+..+...+...|++++|...+...++.. +.+..++..+..
T Consensus 14 ~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~-~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKA-KDYENAIKFYSQAIELN-P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455666667777 88888888888777765 1 245566666677777788888888877777764 335566777777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHH--HHHHHhcCChhHHHHHHHHhh
Q 038206 179 FYASCGHLDLANKVFDNMLE---RSLVSWNVM--IDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 228 (614)
+|.+.|++++|...|++..+ .+...+..+ ...+.+.|++++|++.+.+..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776622 233444333 333666677777777776654
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.02 E-value=6.6e-05 Score=67.43 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=79.1
Q ss_pred hcCCHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCcc-HHHHHHHHHHHhccCCH
Q 038206 285 KCGSLDIARQ---VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSPN-SITFVGVLSACNHRGMV 356 (614)
Q Consensus 285 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p~-~~t~~~ll~a~~~~g~~ 356 (614)
..|++++|.+ ++..-+.....++..+...|...|++++|+..+++. .. .+..|. ..++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4567777777 554433334556666677777777777777777665 22 122222 24455555566667777
Q ss_pred HHHHHHHHHHHHh---cCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcC
Q 038206 357 SEGRDYFDVMINE---YNITP--VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPD----AVIWRSLLDACCKKHA 423 (614)
Q Consensus 357 ~~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~ 423 (614)
++|...++...+. .+-.| ....+..+...+...|++++|.+.+++. +..++ ..++..+...+ ...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA-QQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHCc
Confidence 7777766665442 11111 1234555566666666666666665543 00111 11233444444 5556
Q ss_pred chHHHHHHHHHHHHh
Q 038206 424 SVVLSEEVAKQVIES 438 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (614)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666665555543
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.02 E-value=8.8e-05 Score=69.73 Aligned_cols=126 Identities=10% Similarity=-0.039 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
+-.+...+...|++++|.++|..+... .|+....-.+...+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~---------------------------------------~p~~~~~~~~a~l~ 145 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA---------------------------------------GSEHLVAWMKAVVY 145 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT---------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------------------CCchHHHHHHHHHH
Confidence 345667788889999999998877532 12221444555688
Q ss_pred HhcCCHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCH
Q 038206 284 CKCGSLDIARQVFESMPKR-D----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMV 356 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~ 356 (614)
.+.|++++|+..|+..... + ...+..+-.++.+.|++++|+..|++. ......|.. ......-.++.+.|+.
T Consensus 146 ~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a-~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 146 GAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA-NDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH-hcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 8899999999999866532 2 236777788899999999999999987 433332542 2444555678889999
Q ss_pred HHHHHHHHHHHHh
Q 038206 357 SEGRDYFDVMINE 369 (614)
Q Consensus 357 ~~a~~~~~~~~~~ 369 (614)
++|...|+.+...
T Consensus 225 deA~~~l~~a~a~ 237 (282)
T 4f3v_A 225 SAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999753
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.01 E-value=0.00016 Score=58.68 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCCh
Q 038206 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEF 217 (614)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~ 217 (614)
+...+...|+++.|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence 3333334444444444444443332 1223334444444444444444444444431 12333444455555555555
Q ss_pred hHHHHHHHHhh
Q 038206 218 DSALKLFRRMQ 228 (614)
Q Consensus 218 ~~A~~~~~~m~ 228 (614)
++|...|+++.
T Consensus 94 ~~A~~~~~~~~ 104 (125)
T 1na0_A 94 DEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=5.7e-05 Score=63.72 Aligned_cols=95 Identities=11% Similarity=-0.087 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
...+..+...+.+.|++++|...|++. ...| +...|..+-..+ ...|+++.|...|+++++.+|. ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR-QSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344555666777788888888888775 2334 566677776676 8888888888888888888888 78888888888
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 038206 454 YASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 454 ~~~~g~~~~a~~~~~~m~~ 472 (614)
|...|++++|.+.+++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887655
No 141
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.99 E-value=0.0033 Score=60.24 Aligned_cols=212 Identities=7% Similarity=-0.026 Sum_probs=125.3
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----Hhc---CCh
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG--HLDLANKVFDNMLE---RSLVSWNVMIDAF----VQF---GEF 217 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~----~~~---g~~ 217 (614)
.-++|.++.+.++... +-+..+|+.--..+...| +++++++.++.+.. .+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888898888875 334556777777777788 89999999988733 3556677654444 444 788
Q ss_pred hHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh--HHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC------H
Q 038206 218 DSALKLFRRMQILFEPDGYTFQSITSACAGLATLS--LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS------L 289 (614)
Q Consensus 218 ~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~------~ 289 (614)
++++++++++...-+-|..+|..---.....+..+ ........+++. -+.|...|+.-.....+.|. +
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 89999998887665556666666655556666665 666666666654 23344455554444545444 5
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhhcC--CCccHHHHHHHHHHHhccCCHHHHHHHH
Q 038206 290 DIARQVFESMP---KRDLTSWNSIILGFALHGRAEA-ALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSEGRDYF 363 (614)
Q Consensus 290 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 363 (614)
+++.+.++++. ..|...|+-+-..+.+.|+... +.++..+. ...+ -..+...+..+...+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF-VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT-EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH-HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55555555443 2355566655555555555333 33344433 2111 0123344444555555555555555555
Q ss_pred HHHH
Q 038206 364 DVMI 367 (614)
Q Consensus 364 ~~~~ 367 (614)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.95 E-value=9.1e-05 Score=61.11 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|...++++.+..|. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACY-TKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 35677888999999999999999999986 4445 677888888888 9999999999999999999998 889999999
Q ss_pred HHHhhcCChhhHHHHHHHHHhC
Q 038206 452 RVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+|.+.|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.95 E-value=7.3e-05 Score=61.42 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
..+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|+..++++++..|. +...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL-AKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34555666677777777777777765 2233 466677676666 7778888888888888888777 777777888888
Q ss_pred hhcCChhhHHHHHHHHHh
Q 038206 455 ASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~ 472 (614)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888877655
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.94 E-value=6.8e-05 Score=65.90 Aligned_cols=115 Identities=10% Similarity=0.153 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCH--HHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF-YASCGHL--DLA 189 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~~A 189 (614)
|++++|+..|++..... + .+...+..+...+...|++++|...++.+++.. +.+...+..+..+ |...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-P-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHC-C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 77888888888887765 2 355677777788888888888888888888765 3356677777777 7788887 888
Q ss_pred HHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 190 NKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 190 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
...|+... ..+...|..+...|...|++++|+..|++....
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888763 235667888888888999999999998888765
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.93 E-value=0.00018 Score=58.92 Aligned_cols=114 Identities=11% Similarity=-0.042 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|..+...+... |++++|+..|++..... + .+...+..+...+...|++++|.+.+....+.. +.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKV-ENFEAAVHFYGKAIELN-P-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3455555556666 66666666666666554 1 234455555556666666666666666666543 223445555556
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCC
Q 038206 179 FYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 216 (614)
.|.+.|++++|...|++.. ..+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666665542 1234455555555555444
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.92 E-value=0.00013 Score=60.81 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+ ...|+++.|...++++++..|. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 35666777777788888888888877765 2233 466677777666 7888888888888888888888 778888888
Q ss_pred HHHhhcCChhhHHHHHHHHHh
Q 038206 452 RVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+|...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888887765
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.91 E-value=9e-05 Score=63.22 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=67.7
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWR 412 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 412 (614)
+.|+. ..+..+-..+.+.|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34443 34455555666777777777777777542 2235666777777777777777777777765 3334 355666
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+-.++ ...|++++|...|+++++..|+
T Consensus 109 ~lg~~~-~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQ-LRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Confidence 666666 7777778888888777777766
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.90 E-value=0.00014 Score=65.29 Aligned_cols=170 Identities=8% Similarity=-0.059 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-cCCCccHHHHHHHHHHHhccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFVGVLSACNHRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~p~~~t~~~ll~a~~~~g~ 355 (614)
+......|++++|.+.|+.-.+. ....|..+...+...|++++|+..|++. .. ..-.|+.... .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~--~--------- 78 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA-LDFFIHTEEWDDQ--I--------- 78 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTTTCTTCCCH--H---------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhcccccchh--h---------
Confidence 33344456666666666543321 3345666666677777777777777766 33 1112211000 0
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
...- -.. .....+..+..+|.+.|++++|...+++. ...| +...|..+..++ ...|+++.|...|+
T Consensus 79 ~~~~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 79 LLDK---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN-MYFGFLEEAKENLY 146 (198)
T ss_dssp HHHH---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHTCHHHHHHHHH
T ss_pred HHHH---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcccHHHHHHHHH
Confidence 0000 000 01356677788888888888888888776 2234 567777787788 88899999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhhcCChhhHH-HHHHHHHhCC
Q 038206 434 QVIESEGGICSGVYVLLSRVYASARRWNDVG-LVRKLMTDKG 474 (614)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 474 (614)
++++..|. +...+..+..++...|+.+++. ..++.|...+
T Consensus 147 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 147 KAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998 8888888888888888887777 5555554443
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.89 E-value=0.01 Score=57.62 Aligned_cols=179 Identities=8% Similarity=0.042 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLF-AFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
++.+-....+. +..++|+++++.++..+ |+.. .|+.--..+...+ +++++.+.++.+++.. +-+..+|+.--.
T Consensus 57 ~~~~r~~~~~~-e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKE-EKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTT-CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33333344444 66778999999998887 5544 4565555566667 5888999999888765 346667777766
Q ss_pred HHHhc-C-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChh--------HHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 179 FYASC-G-HLDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFD--------SALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 179 ~~~~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
++.+. + +.++++++++.+.+. |..+|+--...+.+.|.++ ++++.++++.+.-+-|...|+-.-...
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66666 6 788888888888654 4556665555555555555 788888877765445556666555555
Q ss_pred HhhCc-------hhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 246 AGLAT-------LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 246 ~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
.+.+. ++++.+.....+.. .+.|...|+-+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCC
Confidence 55443 34444444444443 23344555554444444443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.89 E-value=0.00024 Score=56.86 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH 422 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 422 (614)
.+...+...|++++|...++...+. .+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+ ...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL-EFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHH
Confidence 3333444444444444444444331 1123344444444455555555555544443 1122 344444444444 555
Q ss_pred CchHHHHHHHHHHHHhcCC
Q 038206 423 ASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~ 441 (614)
|+++.|...+++..+..|.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTT
T ss_pred hhHHHHHHHHHHHHHcCCC
Confidence 5555555555555555544
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.89 E-value=7.6e-05 Score=64.72 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 418 (614)
..+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+-..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444444555555555555555555432 1123444445555555555555555555443 2222 244444444444
Q ss_pred HHhcCchHHHHHHHHHHHHhcCC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|++++|...|+++++..|.
T Consensus 90 -~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 -FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHSS
T ss_pred -HHccCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555544
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=0.00014 Score=58.38 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
....+..+...+...|++++|.+.|++. ...| +...|..+...+ ...|+++.|...++++.+..|. +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAY-AKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3456778888999999999999999987 3334 677888888888 8999999999999999999998 8889999999
Q ss_pred HHhhcCChhhHHHHHHHHHhC
Q 038206 453 VYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 453 ~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+|...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987754
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00017 Score=60.73 Aligned_cols=93 Identities=19% Similarity=0.140 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+ ...|++++|...++++.+..|. +...+..+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH-LKLEDYDKAETEASKAIEKDGG-DVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH-HHHccHHHHHHHHHHHHhhCcc-CHHHHHHHH
Confidence 33444444444444444444444443 22333 23344444444 4444555555555555544444 444444444
Q ss_pred HHHhhcCChhhHHHHHHHHH
Q 038206 452 RVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~ 471 (614)
.+|...|++++|...+++..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555554443
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=8.3e-05 Score=60.77 Aligned_cols=93 Identities=13% Similarity=-0.051 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
+..+...+.+.|++++|...|++. ...| +...|..+-..+ ...|++++|+..++++++..|. +...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445667788889999999888876 3345 667777777777 8889999999999999999998 88888899999999
Q ss_pred cCChhhHHHHHHHHHhC
Q 038206 457 ARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 457 ~g~~~~a~~~~~~m~~~ 473 (614)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887653
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00021 Score=58.61 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACC 419 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 419 (614)
.+......+.+.|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~- 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ- 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-
Confidence 3444555566667777777777666542 2234566677777777777777777777665 2334 455666666666
Q ss_pred HhcCchHHHHHHHHHHHHhc
Q 038206 420 KKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~ 439 (614)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777888888888777777
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.81 E-value=0.00018 Score=70.78 Aligned_cols=143 Identities=10% Similarity=0.007 Sum_probs=93.3
Q ss_pred CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc----------------chHHHH
Q 038206 81 ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK----------------HTFPFA 141 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----------------~t~~~l 141 (614)
++++.|...|+.... | +...|..+-..+.+. |++++|+..|++..... |+. ..|..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE-GKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHH
Confidence 445555555554432 2 455677777788888 99999999999888876 443 566666
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChh
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~ 218 (614)
..++...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++.. ..+...|..+...+.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777776654 3355666666667777777777777776652 224556666666666666666
Q ss_pred HH-HHHHHHhh
Q 038206 219 SA-LKLFRRMQ 228 (614)
Q Consensus 219 ~A-~~~~~~m~ 228 (614)
+| ..+|..|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33555553
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.80 E-value=0.00016 Score=60.84 Aligned_cols=102 Identities=9% Similarity=-0.101 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACC 419 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 419 (614)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~- 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH- 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-
Confidence 3444555667777777777777777652 2235666777777788888888888877765 2233 445566666666
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
...|++++|...++++++..|. ++...
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~-~~~~~ 123 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAA-QPAHE 123 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHT-CGGGH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CcchH
Confidence 7788888888888888888776 44443
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=0.00061 Score=57.24 Aligned_cols=107 Identities=8% Similarity=-0.080 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLL 415 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 415 (614)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 333444444445555555555554432 2233 344555555566666666666655544 2223 445555555
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
..+ ...|++++|...++++++..|. +...+..+..+
T Consensus 107 ~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QAL-EKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHH-HHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 555 6667777777777777777666 55544444433
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.78 E-value=0.00021 Score=60.74 Aligned_cols=106 Identities=11% Similarity=-0.022 Sum_probs=74.9
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWR 412 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 412 (614)
+.|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34433 44555666677788888888888877652 2336667777888888888888888888776 3334 456667
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
.+..++ ...|++++|...|+++++..|. ++.
T Consensus 94 ~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~ 124 (148)
T 2vgx_A 94 HAAECL-LQXGELAEAESGLFLAQELIAN-XPE 124 (148)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHHTT-CGG
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHCcC-CCc
Confidence 777777 8888888888888888888876 443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.77 E-value=0.0003 Score=60.83 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
+...|..+...+.+.|++++|++.|++. .. ..| +...+..+..++...|++++|...|+...+. -+.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQA-LS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 4456666677777777777777777766 33 223 3455666666677777777777777777652 1224666777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 038206 382 LVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m 402 (614)
+..+|.+.|++++|.+.|++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777665
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.77 E-value=5.3e-05 Score=68.11 Aligned_cols=146 Identities=9% Similarity=-0.060 Sum_probs=72.2
Q ss_pred HHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc------------
Q 038206 72 SRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK------------ 135 (614)
Q Consensus 72 ~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~------------ 135 (614)
+..+..... |+++.|.+.|+.-.. .....|..+-..+... |++++|+..|++........|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 333444444 777777777764433 2345577777788888 99999999999998865221211
Q ss_pred --chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 038206 136 --HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDA 210 (614)
Q Consensus 136 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 210 (614)
..+..+..++...|++++|...++..++.. +.+...+..+..+|...|++++|...|++.. ..+...+..+...
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 344444444555555555555555555543 2234444445555555555555555554431 1133344444444
Q ss_pred HHhcCChhH
Q 038206 211 FVQFGEFDS 219 (614)
Q Consensus 211 ~~~~g~~~~ 219 (614)
+...++.++
T Consensus 166 ~~~~~~~~~ 174 (198)
T 2fbn_A 166 VNKLKEARK 174 (198)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 444433333
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00035 Score=71.25 Aligned_cols=165 Identities=7% Similarity=-0.070 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH---HHHHHHH-HHhccCCHHHHHHHHHHHHHh---cCCCC-Chh
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI---TFVGVLS-ACNHRGMVSEGRDYFDVMINE---YNITP-VLE 377 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~---t~~~ll~-a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 377 (614)
++..+...|...|++++|.+.+.......+..++.. .....+. .+...|+.+.+..++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356677788888888888888877622222222221 1222232 344568888888887766431 12222 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC---CCC---
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG---GIC--- 443 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--- 443 (614)
++..|...|...|++++|..++++. ..+|. ..++..+...| ...|++++|..++++.....+ .|.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY-HKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 7778899999999999999888765 11232 44667777777 888999999999988876532 211
Q ss_pred chhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 444 SGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
...+..++..+...|++++|...+.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2445677778888999999988876654
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00016 Score=59.70 Aligned_cols=93 Identities=4% Similarity=-0.026 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc-------hhHH
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS-------GVYV 448 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ 448 (614)
.+..+...+.+.|++++|++.|++. .+.| +...|..+-.++ ...|++++|++.++++++..|. +. .+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~-~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY-FEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-HHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHHHH
Confidence 3445566666677777777766654 3334 455566666666 6777777777777777776654 22 2455
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+|...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777766543
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.70 E-value=0.00031 Score=55.67 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC-CCchhHHHHHHHH
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG-ICSGVYVLLSRVY 454 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 454 (614)
.+..+...+.+.|++++|...|++. ... .+...|..+...+ ...|++++|...++++.+..|. .+...+..+..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL-YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3444455555555555555555543 111 2344555555555 5556666666666666655443 1234555566666
Q ss_pred hhc-CChhhHHHHHHHHHhC
Q 038206 455 ASA-RRWNDVGLVRKLMTDK 473 (614)
Q Consensus 455 ~~~-g~~~~a~~~~~~m~~~ 473 (614)
.+. |++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 666 6666666666655443
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.67 E-value=0.00033 Score=55.50 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP---DAVIWRSLLD 416 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 416 (614)
..+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445556667777777777777777652 2235566777777788888888888877765 3333 4667777777
Q ss_pred HHHHhc-CchHHHHHHHHHHHHhcCC
Q 038206 417 ACCKKH-ASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 417 ~~~~~~-~~~~~a~~~~~~~~~~~~~ 441 (614)
.+ ... |++++|.+.++++.+..|.
T Consensus 85 ~~-~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 AL-RYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HH-TTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HH-HHHhCCHHHHHHHHHHHhhcccC
Confidence 77 788 8888888888888877766
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.65 E-value=0.00016 Score=74.83 Aligned_cols=116 Identities=6% Similarity=-0.079 Sum_probs=80.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
.+.+.|++++|.+.++...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++ ...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN-MALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH-HHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHH
Confidence 345677778888877777652 2234677777888888888888888877766 3344 466777777777 7788888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHH--HhhcCChhhHHHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRV--YASARRWNDVGLVRK 468 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 468 (614)
+|++.++++++..|. +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888877 66667666666 777788888888776
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00084 Score=68.36 Aligned_cols=190 Identities=11% Similarity=-0.015 Sum_probs=99.3
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcc---------------hHHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCch
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKH---------------TFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDV 170 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~---------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 170 (614)
.+.+. |++++|++.|.+..+......+.. .+..+...|...|++++|.+.+..+.+.- -.++.
T Consensus 13 ~l~~~-~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNE-KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHC-CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45556 888888888888877653211111 24556666777777777777666655421 11111
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChh
Q 038206 171 ----YINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236 (614)
Q Consensus 171 ----~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~ 236 (614)
.+.+.+-..+...|+.+.|..+++.... .+ ..++..+...|...|++++|..++++.... ...+.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~- 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD- 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-
Confidence 1222233333445666666666654411 11 234556666666777777777766665543 11110
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC---HHH
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-------KRD---LTS 306 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~---~~~ 306 (614)
-+....++..++..|...|++++|...+++.. .+. ...
T Consensus 171 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 171 --------------------------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp --------------------------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred --------------------------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 01112345555555666666666555554432 110 133
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
+..+...+...|++++|...|.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555666666666655544
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.62 E-value=0.00032 Score=57.37 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC-------chhH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-------SGVY 447 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~ 447 (614)
..+..+...+...|++++|...|++. ... .+...|..+...+ ...|+++.|...++++.+..|. + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVY-FEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHH
Confidence 45566677777778888887777765 222 3566677777777 7788888888888888887665 3 5677
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 448 VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+..+|...|++++|.+.+++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7888888888999999988888765
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.61 E-value=0.00056 Score=70.40 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+-.++ ...|++++|+..|+++++..|. +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~-~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ-LLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 457788888999999999999988876 3334 677888888888 9999999999999999999999 88999999999
Q ss_pred HhhcCChhhHHH-HHHHHHhC
Q 038206 454 YASARRWNDVGL-VRKLMTDK 473 (614)
Q Consensus 454 ~~~~g~~~~a~~-~~~~m~~~ 473 (614)
+.+.|+++++.+ .++.|..+
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999988764 45555443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.60 E-value=0.00029 Score=57.79 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC---chhHHHHHHHH
Q 038206 383 VDLLARAGNIDEALHLVSNM-PMKPDA----VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SGVYVLLSRVY 454 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 454 (614)
...+.+.|++++|.+.|++. ...|+. ..+..+...+ ...|+++.|...++++.+..|. + +..+..+..+|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESY-YATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33444555555555555443 111211 2344444444 5555555555555555555555 3 34455555555
Q ss_pred hhcCChhhHHHHHHHHHh
Q 038206 455 ASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~ 472 (614)
.+.|++++|...+++..+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555666666655555543
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.59 E-value=0.0006 Score=70.52 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccC
Q 038206 279 LIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRG 354 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g 354 (614)
+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.+++. .. +.|+ ...+..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~--l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA-IE--LDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--SCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcC
Confidence 3345566778888877777654 235677777777777788888888877776 33 2333 356666667777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHH--HHHcCCHHHHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDL--LARAGNIDEALHLVS 400 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 400 (614)
++++|.+.|+...+...- +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 788887777777653222 23334444444 666777777777776
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.57 E-value=0.025 Score=54.90 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=89.1
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhC-chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc-C-CH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA-TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-G-SL 289 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~ 289 (614)
+.+..++|+++++++...-+-+...|+.--.+....+ .++++......+.+. .+-+..+|+.-...+.+. + ++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344456666666665432223333444444444444 355555555555543 333445565555555554 5 66
Q ss_pred HHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCC---
Q 038206 290 DIARQVFESMPK---RDLTSWNSIILGFALHGRAE--------AALKYFDRLVVEESFSPNSITFVGVLSACNHRGM--- 355 (614)
Q Consensus 290 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~--- 355 (614)
+++.++++.+.+ +|..+|+.-.-.+.+.|..+ ++++.++++ .+.. .-|...|+..-..+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~-I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM-LRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 777777777663 35666665544444444444 677777766 3322 2234455544444555443
Q ss_pred ----HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 356 ----VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 356 ----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
++++.+.+...+.. -+-|...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45666666655542 22345555555555555544
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.57 E-value=0.00034 Score=57.21 Aligned_cols=94 Identities=6% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHHHH
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM----KPD----AVIWRSL 414 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~l 414 (614)
..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33334444445555555555544431 1223444445555555555555555555443 11 111 4455555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
...+ ...|+++.|.+.++++.+..+
T Consensus 86 a~~~-~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 86 GNSY-FKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHH-HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHH-HHhccHHHHHHHHHHHHHhCC
Confidence 5555 666666666666666666554
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.53 E-value=0.00088 Score=56.99 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----Cc
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM----PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----CS 444 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 444 (614)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+ ...|++++|...+++..+..... ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 3444555555555555555555443 00011 33455555555 67777777777777776553211 13
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+..+...|...|++++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566778888888888888888877643
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.53 E-value=0.00045 Score=58.58 Aligned_cols=90 Identities=13% Similarity=0.001 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-------c
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKPD-------------AVIWRSLLDACCKKHASVVLSEEVAKQVIES-------E 439 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------~ 439 (614)
.....+.+.|++++|++.|++. .+.|+ ...|..+-.++ ...|++++|+..+++.++. +
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al-~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL-AGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3344445555555555555543 11222 23787777777 8888888888888888888 8
Q ss_pred CCCCchhH----HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 440 GGICSGVY----VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 440 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|+ +...| .....++...|++++|...|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88 77888 8888899999999999999988754
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.52 E-value=0.0012 Score=54.56 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=49.7
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 038206 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFV 212 (614)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 212 (614)
..+..+...+...|+++.|...+...++.. +.+...+..+..+|...|++++|...|+... ..+...|..+...|.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 344444445555555555555555555443 2234455555555555555555555555442 123445666666666
Q ss_pred hcCChhHHHHHHHHhhh
Q 038206 213 QFGEFDSALKLFRRMQI 229 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~ 229 (614)
..|++++|+..|++...
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666543
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.49 E-value=0.0017 Score=52.99 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=54.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHh
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKK 421 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~ 421 (614)
..+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|...|++. ...|+ ...+..+...+ ..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~-~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ-YG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-HH
Confidence 3455566666666666666543211110 135555666666777777777766655 22232 34455555566 67
Q ss_pred cCchHHHHHHHHHHHHhcCC
Q 038206 422 HASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~ 441 (614)
.|+++.|...++++.+..|+
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHCCC
Confidence 77777777777777777766
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.47 E-value=0.00085 Score=57.08 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=47.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITP----VLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKP-DAVI 410 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~ 410 (614)
+..+...+...|++++|...++...+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 33444444555555555555554432110001 1234455555566666666666555543 1011 1234
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
+..+...+ ...|++++|.+.+++..+..
T Consensus 132 ~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAY-TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHH-HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHccCHHHHHHHHHHHHHHH
Confidence 44555555 66677777777777766553
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.47 E-value=0.00013 Score=59.13 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHH
Q 038206 353 RGMVSEGRDYFDVMINEYNI-TP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a 428 (614)
.|++++|...|+...+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++ ...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL-YNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHcCCHHHH
Confidence 34555555555555431 10 12 2344445555555555555555555544 1222 233444444444 555555555
Q ss_pred HHHHHHHHHhcCC
Q 038206 429 EEVAKQVIESEGG 441 (614)
Q Consensus 429 ~~~~~~~~~~~~~ 441 (614)
...+++.++..|.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 5555555555444
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.46 E-value=0.0011 Score=54.47 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+|..+...+...|++++|++.|++...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555666666677777766666543
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.42 E-value=0.027 Score=54.29 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC-HHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG--SLDIARQVFESMP---KRDLTSWNSIILGFALHGR-AEAALK 325 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~ 325 (614)
+.+..+...+... .+-+..+|+.-...+.+.| .++++..+++.+. .+|..+|+.-.-.+...|. .+++++
T Consensus 91 ~~EL~~~~~~L~~----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3344444444442 2334455555555555555 3667777776665 3466677666666666666 467777
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc--
Q 038206 326 YFDRLVVEESFSPNSITFVGVLSACNHR--------------GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA-- 389 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-- 389 (614)
.+.++ .... .-|...|+.....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 167 ~~~~~-I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 167 FTDSL-ITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHH-HHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHH-HHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccC
Confidence 77776 3322 12333333332222221 3355566666555432 222444554444444433
Q ss_pred ---------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----HhcCchHHHHHHHHHHHHhcCC
Q 038206 390 ---------GNIDEALHLVSNM-PMKPDAVIWRSLLDACC----KKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 390 ---------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~----~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.++++++.++++ ...||. .|..+-.+.+ ...+..++....+.++.+.+|.
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2345555555554 333443 2322111110 1234445555566666666555
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.39 E-value=0.00077 Score=58.03 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..|..+..++ ...|+++.|+..++++++.+|. +...|..+..+|...|++++|...+++..+
T Consensus 64 ~~~~nla~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCY-LNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4555555565 7777888888888888888777 777777788888888888888887777654
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.34 E-value=0.001 Score=54.07 Aligned_cols=92 Identities=9% Similarity=-0.110 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
+..+...+.+. |++++|+..|++..+.. + .+...+..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 20 ~~~~g~~~~~~-g~~~~A~~~~~~al~~~-P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKL-ANLAEAALAFEAVCQKE-P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33344455555 66666666666666654 1 234455555556666666666666666666654 22344555566666
Q ss_pred HhcCCHHHHHHHHhhc
Q 038206 181 ASCGHLDLANKVFDNM 196 (614)
Q Consensus 181 ~~~g~~~~A~~~f~~m 196 (614)
.+.|++++|...|++.
T Consensus 96 ~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 96 TNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666554
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.0016 Score=64.77 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCL 382 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 382 (614)
...|..+...+.+.|++++|++.|++. ... .|+.. .....++.. ...| +...|..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kA-l~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKV-LRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-HHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHH
Confidence 345667777777888888888888776 221 01000 000111110 1122 35678888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 383 VDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
..+|.+.|++++|++.+++. ...| +...|..+-.++ ...|++++|+..++++++..|. +...+..+..++.+.++.
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW-QGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 88999999999999998876 5555 567788888888 8899999999999999999998 888888888888888887
Q ss_pred hhHHHH
Q 038206 461 NDVGLV 466 (614)
Q Consensus 461 ~~a~~~ 466 (614)
+++.+.
T Consensus 358 ~~a~k~ 363 (370)
T 1ihg_A 358 KDKEKA 363 (370)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 776543
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.24 E-value=0.0038 Score=64.22 Aligned_cols=124 Identities=9% Similarity=0.042 Sum_probs=91.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYN--ITP----VLEHYGCLVDLLARAGNIDEALHLVSNM---------PMKPD-AVIWR 412 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 412 (614)
.+...|++++|..+++...+... +.| ...+++.|...|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888777654321 122 2467888888899999999988887764 23354 34678
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHH-----hcCCCCchh---HHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIE-----SEGGICSGV---YVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
.|-..| ...|++++|+.+++++++ .|++ .+.+ ...|..++...|++++|..++.+++++-
T Consensus 398 nLa~~~-~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTN-WHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 889999999999998876 3666 4433 3567778889999999999999998753
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.22 E-value=0.0013 Score=56.62 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++ ...|+++.|...++++++..|. +.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~l~p~-~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKAR-IAAWKLDEAEEDLKLLLRNHPA-AA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCGG-GH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHhcHHHHHHHHHHHHhcCCC-CH
Confidence 456777888888888888888888776 3344 567778888888 8889999999999999998887 55
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.17 E-value=0.0024 Score=65.57 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=90.3
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc----------------chHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK----------------HTFPFA 141 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----------------~t~~~l 141 (614)
++++.|...|+.... .....|..+-..+.+. |++++|+..|++..+.. |+. ..|..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~-g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG-GKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHHHH
Confidence 444555555544332 2345677777888888 99999999999998865 443 456666
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChh
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~ 218 (614)
..++.+.|++++|...++.+++.. +.+...+..+..+|.+.|++++|...|++..+ | +...|..+...+.+.++.+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777776654 33455666666677777777777777766532 2 3456666666666666666
Q ss_pred HHHH-HHHHhh
Q 038206 219 SALK-LFRRMQ 228 (614)
Q Consensus 219 ~A~~-~~~~m~ 228 (614)
++.+ ++..|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 5553 445554
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00028 Score=56.10 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC------chh
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC------SGV 446 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 446 (614)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|+..++++++..|. + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMAL-IKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 3456667777788888888888888775 2334 566777777777 8888999999999998888877 5 555
Q ss_pred HHHHHHHHhhcCChhhHHHHHH
Q 038206 447 YVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
+..+..++...|+.++|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 6667777777777776655543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.15 E-value=0.0014 Score=64.41 Aligned_cols=145 Identities=7% Similarity=-0.054 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
..|..+...+.+.|++++|+..|++. .. ..|+... +...++.+++...+ . ...|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~A-l~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMA-IA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHH-HH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-HH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 34555666667777888888877765 32 2344331 11222222222111 0 124555566
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hhcCChh
Q 038206 385 LLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY-ASARRWN 461 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 461 (614)
+|.+.|++++|+..+++. ...| +...|..+-.++ ...|++++|...|+++++..|. +...+..|..+. ...+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~-~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK-AELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554 2223 455555555565 6666666666666666666665 555555555442 3344555
Q ss_pred hHHHHHHHHHh
Q 038206 462 DVGLVRKLMTD 472 (614)
Q Consensus 462 ~a~~~~~~m~~ 472 (614)
.+...+++|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 55566655543
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.14 E-value=0.00073 Score=54.51 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
+...+..+...|.+.|++++|...|++.. ..+...|..+..+|.+.|++++|+..|++.
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566666677777777777777776654 224566666667777777777777777665
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.07 E-value=0.0024 Score=62.64 Aligned_cols=93 Identities=10% Similarity=-0.037 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc------------------hHHHHHHHHHccCCcHHHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH------------------TFPFALKACAYLFAFSQGKQAHAH 160 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~ 160 (614)
..|..+-..+.+. |++++|+..|++..... |+.. .|..+..++...|++++|...++.
T Consensus 180 ~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 180 DRRKMDGNSLFKE-EKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHTCSS-SCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666677777 88888888888887765 5443 444455555555555555555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 161 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
.++.. +.+...+..+..+|...|++++|...|++.
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55543 223445555555555555555555555555
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.07 E-value=0.18 Score=48.60 Aligned_cols=126 Identities=9% Similarity=0.003 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHccCC----------cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHT-FPFALKACAYLFA----------FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (614)
++|+.++..+...+ |+..| |+.=-..+...+. ++++..+++.++... +-+..+|+.--.++.+.|
T Consensus 47 ~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 47 ESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 46777777777665 54433 3322222211111 456666777666654 335566666666666666
Q ss_pred --CHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCC-hhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 185 --HLDLANKVFDNML---ERSLVSWNVMIDAFVQFGE-FDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 185 --~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
++++++.+++.+. .+|..+|+--...+.+.|. ++++++.+.++...-+-|...|+......
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 189 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3677777777763 3355666666666666666 47777777777655444555555444433
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.003 Score=49.13 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+...|..+...+ ...|++++|+..|+++++.+|. +...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEH-LKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777 8889999999999999999988 888889999999999999999999887654
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.004 Score=46.96 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
...+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|...++++.+..|. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 445666777777778888887777765 2223 556677777777 7888888888888888888887 77777777776
Q ss_pred HhhcC
Q 038206 454 YASAR 458 (614)
Q Consensus 454 ~~~~g 458 (614)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.01 E-value=0.0021 Score=51.44 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+...|..+...+ ...|+++.|+..++++++..|. +...|..+..+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTY-AEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666 7777777777777777777776 666777777777777777777777776554
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.00 E-value=0.036 Score=58.32 Aligned_cols=168 Identities=8% Similarity=0.020 Sum_probs=127.5
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhcc
Q 038206 288 SLDIARQVFESMP---KRDLTSWNSIILGFALHGR----------AEAALKYFDRLVVEESFSP-NSITFVGVLSACNHR 353 (614)
Q Consensus 288 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~ 353 (614)
.-++|.+.++.+. ..+..+|+.--..+...|+ ++++++.++++ .. ..| +...|..--.++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~-l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC-LR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHc
Confidence 3456788887765 2356678776666666666 88999999988 43 233 345666666666777
Q ss_pred C--CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc------
Q 038206 354 G--MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG-NIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH------ 422 (614)
Q Consensus 354 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~------ 422 (614)
+ +++++.+.++.+.+. -+-+-..|+.-...+.+.| ..+++++.++++ ...| |...|+.....+ ...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll-~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL-PQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH-HHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHH-Hhhcccccc
Confidence 8 779999999999863 2336777777777788888 899999998887 4445 788888877776 442
Q ss_pred --------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhh
Q 038206 423 --------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462 (614)
Q Consensus 423 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (614)
+.++++.+.+.++++..|. |...|..+...+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5679999999999999999 99999999999999888555
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.88 E-value=0.0072 Score=62.17 Aligned_cols=127 Identities=11% Similarity=0.000 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhh--cCC---CccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHh----cCC-CC-ChhHHH
Q 038206 313 GFALHGRAEAALKYFDRLVVE--ESF---SPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINE----YNI-TP-VLEHYG 380 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~--~g~---~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~p-~~~~~~ 380 (614)
.+...|++++|+.++++.... .-+ .|+. .+++.|..+|...|++++|..+++....- +|- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888765221 112 2333 67788888899999999998888876542 121 23 246788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 381 CLVDLLARAGNIDEALHLVSNM---------PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
.|...|...|++++|+.++++. +-.|++.....++..+....+.++.|+..+.++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988765 2345555544555555367888999999999987743
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.87 E-value=0.0061 Score=60.54 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------------------CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCC
Q 038206 173 NNSLIHFYASCGHLDLANKVFDNMLE-------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233 (614)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~f~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 233 (614)
+..+...|.+.|++++|...|++..+ .+...|+.+..+|.+.|++++|+..+++..+.-+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 55556666677777777776665432 12345666666666777777777776666543222
Q ss_pred ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 234 d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
+...+..+..++...+++++|...++.+.+. .+.+..++..+...+.+.++.+++
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l----~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEI----APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555543 112333444444444444444444
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.76 E-value=0.006 Score=51.64 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-P-------MKPD-AVIW----RSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
.|+.+..++.+.|++++|+..+++. . +.|+ ...| ...-.++ ...|++++|+..|++.++..|. |.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL-~~lgr~eEAl~~y~kAlel~p~-d~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL-DGLGRGAEAMPEFKKVVEMIEE-RK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH-CC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHH-HHCCCHHHHHHHHHHHHhcCCC-cH
Confidence 6666667777777777776666554 3 3775 4577 7888888 9999999999999999999887 55
Q ss_pred hh
Q 038206 445 GV 446 (614)
Q Consensus 445 ~~ 446 (614)
..
T Consensus 137 ~~ 138 (159)
T 2hr2_A 137 GE 138 (159)
T ss_dssp SC
T ss_pred HH
Confidence 43
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.72 E-value=0.0099 Score=47.34 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 170 VYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555544431 1233445555555555555555555555544
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.62 E-value=0.0021 Score=54.27 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=63.5
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 387 ARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS----------VVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
.+.+.+++|.+.++.. ...| +...|..+-.++ ...++ +++|+..|+++++.+|+ +..+|..+.++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l-~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVL-LELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3445566666666654 2334 455565555555 54444 56999999999999999 999999999999
Q ss_pred hhcC-----------ChhhHHHHHHHHHhC
Q 038206 455 ASAR-----------RWNDVGLVRKLMTDK 473 (614)
Q Consensus 455 ~~~g-----------~~~~a~~~~~~m~~~ 473 (614)
...| ++++|.+.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9875 899999999988763
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0098 Score=46.71 Aligned_cols=65 Identities=6% Similarity=-0.135 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+...|..+...+ ...|++++|...++++++..|. +...+..+..+|.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSL-FKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456777888888 8999999999999999999999 8999999999999999999999999988764
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.17 Score=55.92 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=103.4
Q ss_pred HcCCCCchHHHH-HHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 038206 109 ARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187 (614)
Q Consensus 109 ~~~~~~~~~A~~-~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 187 (614)
... +++++|.+ ++.. . |+......++..+.+.|..+.|.++.+ +. ..-......+|+++
T Consensus 610 ~~~-~~~~~a~~~~l~~------i-~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLR-GEIEEAIENVLPN------V-EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLT 669 (814)
T ss_dssp HHT-TCHHHHHHHTGGG------C-CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHH
T ss_pred HHh-CCHHHHHHHHHhc------C-CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHH
Confidence 345 77777766 4311 1 212234666677777777777776542 11 11234556789999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccC
Q 038206 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267 (614)
Q Consensus 188 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 267 (614)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-......
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~--- 736 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETT--- 736 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 9999987764 567899999999999999999999998863 334444444455555544444444433
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
| -++.-..+|.++|++++|.+++. +.+++++|..+-+.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 2 23445556666777777766554 45666666666543
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.37 E-value=0.019 Score=44.46 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 169 DVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+..++..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666666777777666666522 2445666677777777777777777766553
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.33 E-value=0.28 Score=51.54 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccCC----------cHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLFA----------FSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (614)
...++|++.++++.... |+.. .|+.--.++...++ ++++...++.+++.. +-+..+|+.--.++.
T Consensus 43 ~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44556777777777766 4433 34444444444444 677777777777765 335566666666666
Q ss_pred hcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHhcC-ChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh-------
Q 038206 182 SCG--HLDLANKVFDNML---ERSLVSWNVMIDAFVQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGL------- 248 (614)
Q Consensus 182 ~~g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~------- 248 (614)
+.| +++++++.++.+. .+|..+|+--...+.+.| .++++++.+.++.+.-+-|...|.....++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 777 5677777777763 345667777666666667 677777777777655444555555554444432
Q ss_pred -------CchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 249 -------ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 249 -------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
+.++++.+.+..++.. .+.|...|+-+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCC
Confidence 3344555555555543 23345566665555555554
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.31 E-value=0.025 Score=46.90 Aligned_cols=110 Identities=10% Similarity=-0.062 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDE 394 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 394 (614)
+.++|++.|++. .+.| .|+.. +-..|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 10 d~~~A~~~~~~a-a~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKA-CELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHH-HHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHH-HcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 455666666665 4444 22222 334445555566666666665442 234444455555554 455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhc
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESE 439 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~ 439 (614)
|.++|++.-..-+...+..|-..| .. .++.++|.+.+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y-~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQ-YAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-HCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555441122344444444444 33 345555555555554443
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.31 E-value=0.043 Score=45.49 Aligned_cols=113 Identities=9% Similarity=-0.059 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----cCchHHHH
Q 038206 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK----HASVVLSE 429 (614)
Q Consensus 354 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~ 429 (614)
++.++|..+|+...+ .| .|... |..+|...+.+++|.+.|++.-..-+...+..|-..| .. .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y-~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH-HcCCCCCccHHHHH
Confidence 467899999999876 35 33333 7778888888999999999873345778888887777 66 78999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCc
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 476 (614)
+.|++..+.+ ++..+..|..+|.. .++.++|.+.+++..+.|..
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999875 56888899999998 89999999999998887753
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.28 E-value=0.031 Score=42.59 Aligned_cols=68 Identities=10% Similarity=-0.066 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 406 PDAVIWRSLLDACCKKHAS---VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
+|...+..+-.++ ...++ .++|..+++++++.+|+ ++.....+...+.+.|++++|...|+++.+.+-
T Consensus 4 ~~~~~~~~~a~al-~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTL-YYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHH-HHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4666777777777 43333 69999999999999999 999999999999999999999999999987543
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.15 E-value=0.037 Score=41.35 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|..+-..+... |++++|+..|++..+.. + .+...+..+...+...|++++|...++...+.. +.+..++..+..
T Consensus 10 ~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQ-GDYDEAIEYYQKALELD-P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455555555666 66666666666666554 1 233445555555666666666666666665543 223344444444
Q ss_pred HHH
Q 038206 179 FYA 181 (614)
Q Consensus 179 ~~~ 181 (614)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.89 E-value=0.011 Score=49.90 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 038206 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN----------IDEALHLVSNM-PMKP-DAVIWRSLLDACCKK 421 (614)
Q Consensus 354 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 421 (614)
+.+++|...++...+. -+.+...|..+..++...|+ +++|+..|++. .+.| +...|..+-.+| ..
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay-~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY-TS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HH
Confidence 3455566666555442 12245555555555555544 34777777665 4455 456777777777 55
Q ss_pred c-----------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 422 H-----------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 422 ~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
. |++++|++.|+++++.+|+ +. .|...+. ..++|-+++-.+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~-~~-~y~~al~------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NT-HYLKSLE------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CH-HHHHHHH------HHHTHHHHHHHHHHS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC-CH-HHHHHHH------HHHhCHhccCccccc
Confidence 4 5899999999999999988 43 3332222 234455555544444
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.77 E-value=0.038 Score=55.78 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=79.9
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----cCCCCc---
Q 038206 383 VDLLARAGNIDEALHLVSNM---------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIES-----EGGICS--- 444 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~--- 444 (614)
+.-+.+.|++++|++++++. +..|+ ..+++.|...| ...|++++|+.+++++++. |+. ++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y-~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a 371 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC-INLGLLEEALFYGTRTMEPYRIFFPGS-HPVRG 371 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHH
Confidence 34455677888888777654 11122 34677788888 8888888888888888753 444 33
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 518 (614)
.+++.|...|...|++++|..++++..+--.. ..| ..||...++...+.....+|+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999998876542110 001 148888888888877777765
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.51 E-value=0.44 Score=38.31 Aligned_cols=140 Identities=10% Similarity=0.067 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.-.|..++..++..+. .. ..+..-|+.++--....-+-+-..++++.+-+-+.+ ..||++..
T Consensus 18 ildG~v~qGveii~k~-~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEI-TK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHH-HH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHhhhHHHHHHHHHHH-cC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 3457777777777665 22 123344555555445555555555555555322221 23555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...-+-.++ .+..-...-+... ...|.-+.-.+++..++... .|++.....+.++|.+.|...+|.+++++.=++|
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~l-v~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDIL-VIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHH-HHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHH-HHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 555555544 2444455566777 88889999999998865533 3368888999999999999999999999999999
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.49 E-value=0.29 Score=53.92 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=66.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHH
Q 038206 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 360 (614)
..+..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++ .. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHH
Confidence 34566788888888877664 5578888888888888888888888877 32 333444444466666555
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038206 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403 (614)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (614)
.+-+..... | -++.-..+|.+.|++++|.+++.++.
T Consensus 728 ~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 544444331 2 12334445666777777777666554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.20 E-value=0.095 Score=52.86 Aligned_cols=83 Identities=6% Similarity=-0.040 Sum_probs=56.4
Q ss_pred ccCCcHHHHHHHHHHHHh---CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhcC----------CCC-hhHHHHHH
Q 038206 147 YLFAFSQGKQAHAHIFKR---GLVSD----VYINNSLIHFYASCGHLDLANKVFDNML----------ERS-LVSWNVMI 208 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~----------~~~-~~~~~~li 208 (614)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++++.. .|+ ..++|.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888887776652 12222 3467778888888888888887777651 122 24677888
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 038206 209 DAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~ 229 (614)
..|...|++++|+.+|++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.13 E-value=0.18 Score=50.87 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=63.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHH
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEY--NITPV----LEHYGCLVDLLARAGNIDEALHLVSNM---------PMKPD-AVI 410 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 410 (614)
+..+.+.|++++|..+++...+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777665421 12222 456777777888888888887777654 23344 346
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHH-----hcCCCCchh
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIE-----SEGGICSGV 446 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 446 (614)
++.|-..| ...|++++|+.+++++++ .|++ ++.+
T Consensus 374 l~nLa~~~-~~~g~~~eA~~~~~~Al~i~~~~lG~~-Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQ-LHQGMFPQAMKNLRLAFDIMRVTHGRE-HSLI 412 (429)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHH
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHH
Confidence 77777777 888888888888888775 3666 4443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.06 E-value=0.033 Score=56.18 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----cCCCCc---hhHHHH
Q 038206 389 AGNIDEALHLVSNM---------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIES-----EGGICS---GVYVLL 450 (614)
Q Consensus 389 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~---~~~~~l 450 (614)
.|++++|+.++++. +..|+ ..+++.|...| ...|++++|+.+++++++. |++ ++ .+|+.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC-LYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 35666666665543 12233 34677777777 7788888888888877753 444 33 456788
Q ss_pred HHHHhhcCChhhHHHHHHHHHh
Q 038206 451 SRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 451 ~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|...|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 8889999999999988887654
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.02 E-value=0.76 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHH--hcC---CHHHHHHHHHHHhhhcCCCccH
Q 038206 303 DLTSWNSIILGFA--LHG---RAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 303 ~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
|...|...+.+.. ..+ ...+|..+|++. .+ ..|+.
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~A-l~--lDP~~ 232 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEI-VQ--SSPEF 232 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHH-HH--HCTTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH--hCCCC
Confidence 5556666665533 222 346778888776 33 45653
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.96 E-value=0.16 Score=38.67 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAV-IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
....+.+.|++++|.+.|++. ...| +.. .|..+-..+ ...|++++|.+.|+++++..|. +...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAY-RKLGDWQKALNNYQSAIELNPD-SPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 345567778888888888776 3334 445 666666666 7888888888888888888887 66554
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.95 E-value=0.067 Score=40.83 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=50.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSG-VYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..+ ...|+++.|...++++++..|. +.. .+..+..+|...|++++|.+.+++..+.
T Consensus 8 ~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KEL-INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345 6789999999999999999998 888 9999999999999999999999998764
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.89 Score=38.86 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=91.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a 359 (614)
.+....+|+++.|.++-+.+ .+...|..|-......|+++-|.+.|.+. .. |..+.-.|.-.|+.+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ-HS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-TC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-CC---------HHHHHHHHHHhCCHHHH
Confidence 44567789999999998776 46789999999999999999999999876 32 34444456667777776
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 038206 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435 (614)
Q Consensus 360 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 435 (614)
..+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... +...+|..+.|.++.+.+
T Consensus 80 ~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-------HHHHcCcHHHHHHHHHHh
Confidence 6554444331 2 244555667778999999999988763332211 115567778888887654
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.54 E-value=1.8 Score=42.00 Aligned_cols=148 Identities=11% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHc--C--CCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHH---ccC--CcHHHH
Q 038206 86 AFRVFYQIENPNSFTWNTLIRACAR--S--VDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACA---YLF--AFSQGK 155 (614)
Q Consensus 86 A~~~f~~m~~~~~~~~~~li~~~~~--~--~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~---~~~--~~~~a~ 155 (614)
+.+.....+ .+...|...+.+... . .....+|..+|++..+.. |+- ..|..+.-++. ..+ ......
T Consensus 183 ~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 183 QETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 334444433 477788888876542 2 133478999999999887 653 33443333322 111 111111
Q ss_pred H---HHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 156 Q---AHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 156 ~---~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
. .+..... ..-+.+..++.++..++...|++++|...+++.. .++...|..+...+.-.|++++|.+.|++...
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 1111111 1124566677777666666788888888887763 35555666666777778888888888876654
Q ss_pred ccCCChhhH
Q 038206 230 LFEPDGYTF 238 (614)
Q Consensus 230 ~~~pd~~t~ 238 (614)
. .|...||
T Consensus 339 L-~P~~~t~ 346 (372)
T 3ly7_A 339 L-RPGANTL 346 (372)
T ss_dssp H-SCSHHHH
T ss_pred c-CCCcChH
Confidence 3 5555444
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.92 E-value=0.52 Score=39.20 Aligned_cols=66 Identities=2% Similarity=-0.140 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHhc-CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 406 PDAVIWRSLLDACCKKHA---SVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++..+.-.+--++ .+.+ ++++|..+++.+.+.+ |.-+...+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~L-v~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCL-VRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4544444444445 5544 5567777777777766 411344555666677777777777777777655
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.28 E-value=3.5 Score=35.18 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=80.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHH
Q 038206 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWA 257 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~ 257 (614)
+...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.+.-.|+.+.-..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3455688899988888776 3567899999999999999999998888753 34444444555665554444
Q ss_pred HHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
-+..... | -++.-...+.-.|+++++.++|.+...-..... .....|..+.|.++.+++
T Consensus 83 a~iA~~~---g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR---E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT---T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC---c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 4433333 2 245555556667777777777766543221111 112255566666666554
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.06 E-value=0.0023 Score=63.41 Aligned_cols=223 Identities=14% Similarity=0.179 Sum_probs=147.2
Q ss_pred ChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 038206 82 DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161 (614)
Q Consensus 82 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (614)
+++.|.+.-++...| ..|+.+-.+.... +...+|++.|- +--|...|..++.++.+.|.+++-..++...
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~-~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQK-GMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTS-SSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHcc-CchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344444444443333 4588888888888 88888876652 2146667888888888888888888887766
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-----------
Q 038206 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----------- 230 (614)
Q Consensus 162 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------- 230 (614)
.+. ..++.+=+.|+-+|++.+++.+-.+++ ..||+.-...+..-|...|.++.|.-+|..+..-
T Consensus 110 Rk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 110 RKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp STT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred HHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 654 334556678888899888876654443 3355555566666666666666666666554221
Q ss_pred ----------cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 231 ----------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 231 ----------~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
-.-+..||-.+-.+|...+.+..|...--.++-. ..-...|+..|-+.|.+++-..+++.-.
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--------adeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--------ADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--------SSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--------HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2346789999999999999888776543333321 2223356777888888888877777443
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 301 ---KRDLTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 301 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
......|+-|.-.|++- ++++..+.++
T Consensus 257 glErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 45778888888888775 4555555543
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.92 E-value=0.48 Score=44.12 Aligned_cols=68 Identities=3% Similarity=-0.037 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc-CChhhHHHHHHHHHhCCCc
Q 038206 408 AVIWRSLLDACCKK-----HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA-RRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 408 ~~~~~~ll~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~ 476 (614)
-..|..|...| .+ .|+.++|++.|++.++++|.-+..++......++.. |+.+++.+.+++.......
T Consensus 199 GsA~~~LG~lY-~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFY-AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHH-HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHH-HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555555555 55 478888888888888888762477777777877774 7788888888877776555
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.70 E-value=0.99 Score=42.02 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHH-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 376 LEHYGCLVDLLAR-----AGNIDEALHLVSNM-PMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 376 ~~~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++...-..+|...|+.+.+.+.+++.+...|.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3345555555655 36666666666655 33442 4445555555522346666666666666666655
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.60 E-value=1.3 Score=34.06 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-----P----MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
+-.|...+.+.|+++.|...|+.. + -.+...++..|..++ .+.|+++.|...++++.+..|. +..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~-~~~g~~~~A~~~~~~al~l~P~-~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV-YQQGDLDKALLLTKKLLELDPE-HQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCC-CHHH
Confidence 344555555556665555555443 0 012455666677777 7778888888888888887777 5444
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.50 E-value=1.8 Score=32.54 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 186 LDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 186 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
.++|..+|++.. ..++.++..+...+.+.|++++|+..|+++...
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555442 123444555555566666666666666666544
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.15 E-value=1.1 Score=37.21 Aligned_cols=86 Identities=9% Similarity=-0.016 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhcCchHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG---NIDEALHLVSNM-PMK-P--DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
..+.+-|.+..+. + .++..+.-.+..++.+.+ +++++..++++. ... | +...+..|--++ .+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~-~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN-YRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTSCHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH-HHccCHHHHH
Confidence 3344444444331 2 255566566666666666 455666666655 212 4 233445555567 8889999999
Q ss_pred HHHHHHHHhcCCCCchh
Q 038206 430 EVAKQVIESEGGICSGV 446 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (614)
+.++.+++..|. +...
T Consensus 92 ~y~~~lL~ieP~-n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQ-NNQA 107 (152)
T ss_dssp HHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHhcCCC-CHHH
Confidence 999999999998 5544
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.92 E-value=5.4 Score=32.16 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
+....+..+..+...|+-++-.+++..+....+|++.....+..||.+.|+...+.++...+-+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33445556667777777777777777754445666666777777777777777776666666655
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.87 E-value=2 Score=32.97 Aligned_cols=65 Identities=15% Similarity=-0.040 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC------CCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG------GICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+..-...|...+ ...++++.|...++.+++... .+....+..|..+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~-~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455666677 888999999999999987631 12456788999999999999999999998865
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.56 E-value=21 Score=35.85 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhc--CCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHh-cCC--CCC--
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEE--SFSPN---SITFVGVLSACNHRGMVSEGRDYFDVMINE-YNI--TPV-- 375 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~--~p~-- 375 (614)
....|...|-..|++.+|.+++.++ ..+ |..+. ...+...+..|...+++..|..+...+... ... .|+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l-~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCEL-QVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3455667788888888888888887 432 22222 134556667788888999888888876421 111 222
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...|..++..+...+++.+|.+.|.+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345677888888888888888777665
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.17 E-value=2 Score=46.22 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=48.1
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
...|+++.|+++.++....-|. +-.+|..|..+|.+.|+|+.|.-.++.+.
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6789999999999999999999 99999999999999999999999998874
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.10 E-value=0.02 Score=56.85 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
.+|+.|..++.. |.+.+|.+-|= ...|+..|..+|.+..+. |.+++-+..+...++.. -+...=+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~-~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA---RESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTS-SCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh---cccccHHHHHHHHHh
Confidence 678888888888 88888877663 345666788899998888 99988888776555543 344556678889999
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC------------------------CCChhH
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML------------------------ERSLVS 203 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------~~~~~~ 203 (614)
.+++.+-.+++ -.|+..-...+-+-+...|.++.|.-+|..+. ..++.|
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88876654432 24565556677777888888888888887662 236789
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
|-.+-.+|...+.+.-|--.--.+. +.|| -...++..|-..|.+++-..+++.-... -.....+++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI--vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl----ErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV--VHAD--ELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH--CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS----TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc--ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC----CchhHHHHHHHHHHH
Confidence 9999999999999887654433332 2222 2334556677788888877777665521 223566888888888
Q ss_pred HhcCCHHHHHHHHhc----CCCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 038206 284 CKCGSLDIARQVFES----MPKR-------DLTSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~----m~~~-------~~~~~~~li~~~~~~g~~~~A~~ 325 (614)
+|- ++++-.+-++. +.-| ....|.-++--|++..+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 34444443332 2222 34579999999999898887754
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.47 E-value=6.8 Score=32.25 Aligned_cols=53 Identities=6% Similarity=-0.044 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCc
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 476 (614)
+|.++|.++|+.+++...+. +..|......-.+.|+.+.|.+++.+....+-+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67778888888887764442 455556666667788888888888776665443
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.05 E-value=26 Score=33.03 Aligned_cols=170 Identities=9% Similarity=0.016 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHH----Hhhhc-cCCChhhHHHHHHHHH
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR----RMQIL-FEPDGYTFQSITSACA 246 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-~~pd~~t~~~ll~a~~ 246 (614)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++-. -..+. +++|..+..-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556677788888999988886542 223445566555544322 22223 5666666655555554
Q ss_pred hhCchh-HHHHHHHHHHHhcc-CC--CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CC
Q 038206 247 GLATLS-LGMWAHAYILRHCD-HS--LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH---GR 319 (614)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~-~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 319 (614)
....-+ .-..+...+++... .| -.-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432111 12233333333211 12 2236677888889999999999998877633222455555444443333 33
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 320 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
..++-- ..-.+++. |...+++..|..+|+...+
T Consensus 184 ~~e~dl---------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAE---------------FFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH---------------HHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred cchHHH---------------HHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 333211 11222332 4456788888888887654
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.33 E-value=8.7 Score=31.66 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=62.8
Q ss_pred CChhhHHHHHHHHHcCCCCc------hHHHHHHHHHHHcCCCCCCcc----hHHHHHHH---HHccCCcHHHHHHHHHHH
Q 038206 96 PNSFTWNTLIRACARSVDAK------PQAIVLFQRMIEQGNVLPDKH----TFPFALKA---CAYLFAFSQGKQAHAHIF 162 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~------~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~---~~~~~~~~~a~~~~~~~~ 162 (614)
.|..+|=..+.-+-+. |++ ++.+++|++....- + |+.. .|..+.-- +...+|.+.|+++|..++
T Consensus 11 ~~yd~W~~yl~llE~~-g~p~~d~~l~rlrd~YerAia~~-P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKN-SVPLSDALLNKLIGRYSQAIEAL-P-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHHHHHHHHS-C-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHHHHHcC-C-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4677787778777777 888 77888888777643 3 4432 12221111 123378888888888887
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 163 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
+..-.- ..+|-.....-.+.|++..|.+++...
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 763232 666766667777778888888877653
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.19 E-value=6.8 Score=29.64 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
+.-+..+-++.+ -...+.|+.....+.|.||.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l-~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 455677777777 677889999999999999999999999999999886643 334556776664
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.03 E-value=3.1 Score=41.11 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=41.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh-----CCCccCCCc
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD-----KGVTKEPGC 481 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 481 (614)
++.++ ...|+.+.+...+..+....|- +...|..|+.+|.++|+..+|.+.|+...+ .|+.|.|..
T Consensus 177 ~~~~~-l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAE-IACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44445 5566666676666666666666 666667777777777777777766665432 366665543
No 240
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.79 E-value=51 Score=34.77 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.1
Q ss_pred HHcCCHHHHHHHHHhCCCCCCH
Q 038206 387 ARAGNIDEALHLVSNMPMKPDA 408 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~p~~ 408 (614)
...|+++.|++.++++++-|..
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHcCCHHHHHHHHHhCCCCCCC
Confidence 5789999999999988766643
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.69 E-value=45 Score=33.32 Aligned_cols=314 Identities=11% Similarity=0.063 Sum_probs=149.0
Q ss_pred CCchHHHHHHHHHHHcC-----CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-hCCCCchhH--HHHHHHHHHhcC
Q 038206 113 DAKPQAIVLFQRMIEQG-----NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK-RGLVSDVYI--NNSLIHFYASCG 184 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~~~~~g 184 (614)
+++++|++.+..+.+.. .. ........++..|...++++...+.+..+.+ +|..+...+ .+.++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~-s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLA-SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 56777777766655431 11 2344567778888888888887776665554 332222211 122233333333
Q ss_pred CHH--HHHHHHhhcCC---C-------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCch
Q 038206 185 HLD--LANKVFDNMLE---R-------SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251 (614)
Q Consensus 185 ~~~--~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~ 251 (614)
..+ .-..+.+.... . .......|...|-..|++.+|..++..+... ...+....
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence 222 22233332211 1 0112345777888889999999888888655 22221110
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCC--HHHHHHHHHHHHhcCCHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--------KRD--LTSWNSIILGFALHGRAE 321 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~--~~~~~~li~~~~~~g~~~ 321 (614)
-+.++...+..|...+++..|..++.++. .|+ ..-+..++..+...+++.
T Consensus 176 --------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 176 --------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred --------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 01223334444555555555554444432 111 123444455555566666
Q ss_pred HHHHHHHHHhhhcCCCccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc--CCHHH
Q 038206 322 AALKYFDRLVVEESFSPNSITFV-----GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA--GNIDE 394 (614)
Q Consensus 322 ~A~~l~~~m~~~~g~~p~~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~ 394 (614)
+|-+.|.+......+.-|...+. .++......... .-..+......+ ..-++...|..++.+|... .+++.
T Consensus 236 ~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~-~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~ 313 (445)
T 4b4t_P 236 EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN-LQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPI 313 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS-TTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHH
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHH
Confidence 66555555422211111221111 111111111111 111222222222 2235677888899998764 35677
Q ss_pred HHHHHHhCC-CC-------CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHH
Q 038206 395 ALHLVSNMP-MK-------PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 395 A~~~~~~m~-~~-------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
+.+.|...- -. .....|..|.... ..+. +- .+.+.. +..++..+.....- ..+++...
T Consensus 314 ~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v-~ehn-l~-------~i~k~Y---s~I~l~~la~lL~l--~~~evE~~ 379 (445)
T 4b4t_P 314 VQKTYEPVLNEDDLAFGGEANKHHWEDLQKRV-IEHN-LR-------VISEYY---SRITLLRLNELLDL--TESQTETY 379 (445)
T ss_dssp HHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHH-HHHH-HH-------HHHHHE---EEEEHHHHHHHHTS--CHHHHHHH
T ss_pred HHHHHHHHhcccchhhhcchhhHHHHHHHHHH-HHHH-HH-------HHHHHh---ceeeHHHHHHHhCc--CHHHHHHH
Confidence 777776541 01 1133455555554 3331 11 111111 23444444444432 46788888
Q ss_pred HHHHHhCCCc
Q 038206 467 RKLMTDKGVT 476 (614)
Q Consensus 467 ~~~m~~~g~~ 476 (614)
...|...|..
T Consensus 380 ls~mI~~g~i 389 (445)
T 4b4t_P 380 ISDLVNQGII 389 (445)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHCCCE
Confidence 8888776653
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.60 E-value=13 Score=31.15 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMK 405 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (614)
...---+..+|.+.|+.++|+.+++.+|.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344445667777788888888888777644
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.28 E-value=57 Score=34.20 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHhhhc-CCCccHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 318 GRAEAALKYFDRLVVEE-SFSPNSI--TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.+.+.|..+|... ... ...+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~-~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSL-AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhh-hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 3789999999887 433 3333322 2222333344455344555566655332 2343344455555567899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 395 ALHLVSNMPMKP-D-AVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 395 A~~~~~~m~~~p-~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
|...|+.|+..+ + ..-..=+-.+. ...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~-~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLL-LERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHH-HHcCCHHHHHHHHHHHhc
Confidence 999999996443 2 22222233455 677999999999999864
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.04 E-value=6.4 Score=29.77 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
+...-++.+...+.. |++....+.|+||.+.+|+..|.++++.++..- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 455555555666666 777777777777777777777777777665432 22234455444
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.97 E-value=7.7 Score=30.92 Aligned_cols=26 Identities=4% Similarity=0.010 Sum_probs=16.2
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
.+.|+++.|.+.++.+++..|. |...
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~-n~QA 110 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQ-NNQA 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 5666666666666666666665 5443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.50 E-value=36 Score=38.93 Aligned_cols=189 Identities=8% Similarity=0.021 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc---------------
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--------------- 339 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--------------- 339 (614)
....++..+.+.|..+.|.++..-.+. +..+--.+..+|...|++++|.+.|.+. ..|+..+
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhhcccccccc
Confidence 344566667777888777776655543 4433344556778889999999999764 2222111
Q ss_pred --------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C--hhHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CC
Q 038206 340 --------SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-V--LEHYGCLVDLLARAGNIDEALHLVSNMPMK-PD 407 (614)
Q Consensus 340 --------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~ 407 (614)
..-|..++..+.+.+.++.+.++-....+..+-.+ + ...|..+.+.+...|++++|...+-.++.. --
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 12356677778888888888887776665322222 1 225788889999999999998888776411 23
Q ss_pred HHHHHHHHHHHHHhcCc------------hHHHHHHHHHHH-Hh-cCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 408 AVIWRSLLDACCKKHAS------------VVLSEEVAKQVI-ES-EGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 408 ~~~~~~ll~~~~~~~~~------------~~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
......|+... ...+. .++..+++..-. .. .+...+.-|..|-.-+...|++..|..++
T Consensus 971 ~~cLr~LV~~l-ce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 971 KSCLLDFVNQL-TKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHHHHHHH-HHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHH-HhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 45566666666 33333 333344443222 22 23312344666666677888888777664
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.16 E-value=18 Score=28.73 Aligned_cols=92 Identities=11% Similarity=-0.033 Sum_probs=60.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHH---HHHHHHHHHHhcCCCC--ChhHHHHHHHHH
Q 038206 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE---GRDYFDVMINEYNITP--VLEHYGCLVDLL 386 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 386 (614)
..-........+.+-|.+. ...|. |+..+--.+..++.++..... |+.+++.+.+. -.| .....-.|.-++
T Consensus 9 ~~~~~~~~l~~~~~~y~~e-~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSE-KAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH-hccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 3333344455666666655 34343 555555556667788777665 88888888652 223 344455677788
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC
Q 038206 387 ARAGNIDEALHLVSNM-PMKPD 407 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p~ 407 (614)
.+.|++++|++.++.+ .++|+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhhHHHHHHHHHHHHHhCCC
Confidence 9999999999999887 45564
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.55 E-value=16 Score=29.27 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
+.-+..+-++.+ -...+.|+.....+.|.+|.+.+++..|..+|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l-~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 455666667777 67788999999999999999999999999999999664 4444556777764
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.27 E-value=22 Score=38.16 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHhhcCCCCh--hH--HHHHHHHHHhcC-ChhHHHHHHHHhhhc-------cCCChh----
Q 038206 174 NSLIHFYASCGH-LDLANKVFDNMLERSL--VS--WNVMIDAFVQFG-EFDSALKLFRRMQIL-------FEPDGY---- 236 (614)
Q Consensus 174 ~~li~~~~~~g~-~~~A~~~f~~m~~~~~--~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~-------~~pd~~---- 236 (614)
.+|+..+...|+ .+.|..+|+++.+.+. .+ ..++|..+.+.+ +--+|++++.+..+. ..+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555566 5778888888754432 12 223333333332 223455555544321 122111
Q ss_pred --hH-HHH----HHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 237 --TF-QSI----TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 237 --t~-~~l----l~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
.+ ..+ ..-|...++++.|..+-...+.. .+.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 00 112 23466789999999999998875 45557799999999999999999999999986
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.68 E-value=49 Score=36.44 Aligned_cols=251 Identities=11% Similarity=-0.003 Sum_probs=112.6
Q ss_pred HHHHHHHHccCCcHHH-H-HHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhhcCC----CChh--HHHHHHH
Q 038206 139 PFALKACAYLFAFSQG-K-QAHAHIFKRGLVSDVYINNSL-IHFYASCGHLDLANKVFDNMLE----RSLV--SWNVMID 209 (614)
Q Consensus 139 ~~ll~~~~~~~~~~~a-~-~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~----~~~~--~~~~li~ 209 (614)
.++.+++...|-.... . ....++-+. . +..-++++ --+....|+.++++.+++.... .+.. .-..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3555666666643322 1 112233332 2 22222222 2345567788888888777543 1212 2233444
Q ss_pred HHHhcCChhHHHHHHHHhhhccC---C---ChhhH-HH---HHHHHHhhCchhHHHHHHHHHHHhccCCCCccc--cHHH
Q 038206 210 AFVQFGEFDSALKLFRRMQILFE---P---DGYTF-QS---ITSACAGLATLSLGMWAHAYILRHCDHSLVTDV--LVNN 277 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~~~---p---d~~t~-~~---ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~ 277 (614)
|....|..++++.++......-. - +...- .+ +--++...++-+ +...+..+... . .+.. ...-
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee-v~e~L~~~L~d---d-~~~~~~~Aal 494 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE-VYEALKEVLYN---D-SATSGEAAAL 494 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH-HHHHHHHHHHT---C-CHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHhc---C-CHHHHHHHHH
Confidence 56666666667776665543311 0 01111 11 112222233322 23333333322 1 0111 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHH---HHHHHHh
Q 038206 278 SLIDMYCKCGSLDIARQVFESMP-KRD--LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV---GVLSACN 351 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m~-~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~---~ll~a~~ 351 (614)
+|.-.|.-.|+-+....++..+. ..+ +.-.-++--|+...|+.+.+..+.+.+ ... -.|. .-|. ++.-+|+
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L-~~~-~dp~-vRygaa~alglAya 571 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM-LAS-DESL-LRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH-HHC-SCHH-HHHHHHHHHHHHTT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHH-HhC-CCHH-HHHHHHHHHHHHhc
Confidence 33334455666666666655432 112 222223333444667777777777766 331 1222 2222 2334567
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
..|+.....+++..+.. ....++.....+.-++...|+.+.+.++++.+
T Consensus 572 GTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp TSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 77777777767777754 22223333333333333455555555555543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.36 E-value=29 Score=39.75 Aligned_cols=169 Identities=9% Similarity=0.028 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhH
Q 038206 174 NSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
..++..+.+.+..+.|.++..-.+ .+..+--.+..+|...|++++|.+.|.+.-..+..+......+ .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~----------~- 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVL----------R- 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSH----------H-
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhh----------c-
Confidence 345556666777777777655443 3444444566778889999999999987644321111110000 0
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhc----CCCCC--H--HHHHHHHHHHHhcCCHHHHHH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES----MPKRD--L--TSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----m~~~~--~--~~~~~li~~~~~~g~~~~A~~ 325 (614)
. ...+.... .....-..-|..++..+-+.|.++.+.++-.. ....+ . ..|..+..++...|++++|..
T Consensus 884 --~-~~~~~~~~-~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 --E-FQEIAEKY-HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp --H-HHHHHHTT-TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred --c-cccccccc-cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 00111100 00111123466777777777777766554432 22222 1 258888999999999999999
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 038206 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
.+-.+ .....+ ...+..|+...+..+..+.-..
T Consensus 960 aL~~~-pd~~~r--~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 960 ALMVL-STTPLK--KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHH-HHSSSC--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhC-CCHHHH--HHHHHHHHHHHHhCCChhhhhC
Confidence 99877 554443 3556667777777777666544
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.54 E-value=12 Score=36.72 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=43.4
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-----hCCCCchhH
Q 038206 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK-----RGLVSDVYI 172 (614)
Q Consensus 104 li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 172 (614)
++..+... |++++|+..+..+.... + .+...+..+|.++...|+..+|.+.|+.+.+ .|++|+..+
T Consensus 177 ~~~~~l~~-g~~~~a~~~l~~~~~~~-P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIAC-GRASAVIAELEALTFEH-P-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44455566 77777777777766655 2 3566777777777777777777777766543 477776554
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.39 E-value=71 Score=30.31 Aligned_cols=170 Identities=9% Similarity=0.056 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHh----hhc-cCCChhhHHHHHHHHH
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM----QIL-FEPDGYTFQSITSACA 246 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-~~pd~~t~~~ll~a~~ 246 (614)
+|.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++-.-| .+. +++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666788889999998886442 23344556655554443322 222 6666666666665555
Q ss_pred hhCchh-HHHHHHHHHHHhccC-C--CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038206 247 GLATLS-LGMWAHAYILRHCDH-S--LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322 (614)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~~-g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 322 (614)
....-+ .-..+...+++...+ | -.-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+--+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 444321 112223333322110 3 23456677888899999999999999884322333355554444333322211
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 323 A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.+|...-.+++. |...+++..|..+++...+
T Consensus 185 --------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122233333443 4556788888887766654
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.50 E-value=1.3e+02 Score=33.09 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=115.5
Q ss_pred CChhHHHHHHhcCCC----CChh--hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCC-CC---cch-HH-HHHHHHHcc
Q 038206 81 ADLDYAFRVFYQIEN----PNSF--TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PD---KHT-FP-FALKACAYL 148 (614)
Q Consensus 81 g~~~~A~~~f~~m~~----~~~~--~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~-p~---~~t-~~-~ll~~~~~~ 148 (614)
|+.++++.+++.-.. .+.. .-..+--|++.. |..+++++++.......... -+ ... .. ++--+.+..
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~a-g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYA-GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 777888888876543 1222 122222355666 66667777776665432100 00 111 11 111112222
Q ss_pred CC-cHHHHHHHHHHHHhCCCCchhH--HH--HHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhcCChhHH
Q 038206 149 FA-FSQGKQAHAHIFKRGLVSDVYI--NN--SLIHFYASCGHLDLANKVFDNMLE--RS-LVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 149 ~~-~~~a~~~~~~~~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A 220 (614)
|. -+++...+..++... +..+ .. +|--.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.+
T Consensus 467 GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 467 GSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp TCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred CCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 32 133444444444322 2111 11 222334445666666666655422 12 12223333455577888888
Q ss_pred HHHHHHhhhccCCChhhHH---HHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHh
Q 038206 221 LKLFRRMQILFEPDGYTFQ---SITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297 (614)
Q Consensus 221 ~~~~~~m~~~~~pd~~t~~---~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 297 (614)
..+.+.+.....|.. -|. ++.-+|+..|+.....+++..+... ...++.-...+.-+....|+.+.+.++++
T Consensus 544 ~~li~~L~~~~dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 544 DDLITKMLASDESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp HHHHHHHHHCSCHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHhCCCHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888777765322222 222 2234567778877777777777653 22233322223333444666666667766
Q ss_pred cCC-CCC--HHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 038206 298 SMP-KRD--LTSWNSIILGFALHGRA-EAALKYFDRL 330 (614)
Q Consensus 298 ~m~-~~~--~~~~~~li~~~~~~g~~-~~A~~l~~~m 330 (614)
.+. ..| +..-.++..|....|.. .++++++..+
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 443 223 33333344444444443 4677788777
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.23 E-value=36 Score=25.63 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=59.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356677777777766553 333333334456778999999999999999999999888654 6787788877777776
Q ss_pred hccCCChhhH
Q 038206 229 ILFEPDGYTF 238 (614)
Q Consensus 229 ~~~~pd~~t~ 238 (614)
..-.|....|
T Consensus 96 ~sg~p~~q~F 105 (115)
T 2uwj_G 96 GSSDPALADF 105 (115)
T ss_dssp TCSSHHHHHH
T ss_pred hCCCHHHHHH
Confidence 5434433333
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.22 E-value=17 Score=29.22 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
+...-++.+...+.. |++......|++|.+.+|+..|.++++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlV-PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444445555566666 777777777777777777777777777665432 33344555554
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.06 E-value=38 Score=25.52 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
...++|.-|-+.+...|- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-.. +.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356677777777766553 333333334456778999999999999999999999888664 5677777777776665
Q ss_pred hccCCCh
Q 038206 229 ILFEPDG 235 (614)
Q Consensus 229 ~~~~pd~ 235 (614)
..-.|..
T Consensus 97 ~sg~p~~ 103 (116)
T 2p58_C 97 RSQDPRI 103 (116)
T ss_dssp TCCCHHH
T ss_pred hCCCHHH
Confidence 4433333
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.95 E-value=52 Score=26.70 Aligned_cols=50 Identities=4% Similarity=-0.043 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+++.+++.+...+|.-.....-.|.-+|.+.|++++|.+..+.+.+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34556777777777766541223334566677777777777777777655
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.17 E-value=1.1e+02 Score=29.96 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--------CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--------PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~ 139 (614)
.....|...|.+ |+.++...++..... +....-..+|..+...++..+.-.++..+..+... -+..+|-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 345567778888 888888888877653 23344566777777664555555555555443221 1223331
Q ss_pred ------HHHHHHHccCCcHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 038206 140 ------FALKACAYLFAFSQGKQAHAHIFKRGLVSD-----VYINNSLIHFYASCGHLDLANKVFDN 195 (614)
Q Consensus 140 ------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~ 195 (614)
.+...+...|++.+|.+++..+.+.--..| ..++..-+.+|...+++..+...+..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456667777777777777666665311111 23455556666677776666655543
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.03 E-value=15 Score=29.46 Aligned_cols=49 Identities=4% Similarity=-0.042 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+..+|+.+++.+.+.+|.-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445555555555554421123333455555666666666666555443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=63.51 E-value=52 Score=26.35 Aligned_cols=71 Identities=10% Similarity=-0.071 Sum_probs=36.0
Q ss_pred CCccHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038206 336 FSPNSITFVGVLSACNHRG---MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD 407 (614)
Q Consensus 336 ~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 407 (614)
-.|+..|--.+..++.++. +..+|+.+++.+.+. +-.-.....--|.-++.+.|++++|++..+.+ .++|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3344433333333444443 344567777766653 21112334445555666666666666666655 44554
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.83 E-value=78 Score=28.52 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=91.0
Q ss_pred HHHHHhc-CChhHHHHHHhcCCCCCh----hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc---hHHHHHHHH
Q 038206 74 IIHFASF-ADLDYAFRVFYQIENPNS----FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH---TFPFALKAC 145 (614)
Q Consensus 74 li~~~~~-g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~---t~~~ll~~~ 145 (614)
.+...++ |+++....+++.-..++. .-++. +...+.. |+. ++++.+.+.|.. |+.. -.+ .+...
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~-g~~----~~v~~Ll~~g~~-~~~~~~~g~t-~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQM-SRE----DIVELLLRHGAD-PVLRKKNGAT-PFLLA 79 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHT-TCH----HHHHHHHHTTCC-TTCCCTTCCC-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHc-CCH----HHHHHHHHcCCC-CcccCCCCCC-HHHHH
Confidence 3333344 777777777766444322 12333 3333444 554 344445555543 4322 222 23333
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhhcCCCChh-------------HHHHHHHH
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYI--NNSLIHFYASCGHLDLANKVFDNMLERSLV-------------SWNVMIDA 210 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-------------~~~~li~~ 210 (614)
+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-...+++.-...+.. .++ .+..
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~ 154 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMD 154 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHH
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHH
Confidence 4445544 4444555665544221 122344455677777777776654333211 112 2333
Q ss_pred HHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc--HHHHHHHHHHhcC
Q 038206 211 FVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL--VNNSLIDMYCKCG 287 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 287 (614)
.+..|+.+-+..+++..... -..|..-.+.+..++ ..+.......+.+.+.+. |..++.. ...+.+...++.|
T Consensus 155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHT---TCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcC
Confidence 34456655444444432222 222222223333332 334433344555555555 5544322 1122333444455
Q ss_pred CHHHHHHHHh
Q 038206 288 SLDIARQVFE 297 (614)
Q Consensus 288 ~~~~A~~~~~ 297 (614)
+.+-+..+++
T Consensus 231 ~~~~v~~Ll~ 240 (285)
T 1wdy_A 231 HLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 5555544444
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.90 E-value=49 Score=24.93 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
..++|.-+-+.+... +. ...+--+-+..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+
T Consensus 21 ~HqEA~tIAdwL~~~---~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERL---GQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHT---TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 345555555555544 32 22222233456778899999999999999999999988766 477888888888877
Q ss_pred HhhhcCCCccHHHHHH
Q 038206 330 LVVEESFSPNSITFVG 345 (614)
Q Consensus 330 m~~~~g~~p~~~t~~~ 345 (614)
+ ...| .|....|..
T Consensus 94 l-a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 L-GGSS-DPALADFAA 107 (115)
T ss_dssp H-HTCS-SHHHHHHHH
T ss_pred H-HhCC-CHHHHHHHH
Confidence 7 4444 565555544
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.73 E-value=1.1e+02 Score=28.80 Aligned_cols=168 Identities=10% Similarity=0.016 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHhhhcCCCccHHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKY----FDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
.|.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-. .+.++++|......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Confidence 355666678889999999888643 22345667877666554 4444 6678888888877777766
Q ss_pred hccCCHH-HHHHHHHHHHH---hcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhc--
Q 038206 351 NHRGMVS-EGRDYFDVMIN---EYNI--TPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH-- 422 (614)
Q Consensus 351 ~~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-- 422 (614)
..-..-+ .=..+.+.+++ +.|- .-++.....+...|.+.|++.+|+.-|- .+..-|...+..++--+ ...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w-~~~~~ 180 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDW-LCQVD 180 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHH-HHHTT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHH-HHhcC
Confidence 5432111 11223333321 1222 2367778889999999999999998775 22111344555555544 322
Q ss_pred -CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 423 -ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 423 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|...++--+.. -.+--|.-.|+...|..+++...
T Consensus 181 ~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 32222211111 11223445677888888877654
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=61.70 E-value=71 Score=26.73 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=66.6
Q ss_pred hCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhc-----CCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 164 RGLVSDV--YINNSLIHFYASCGHLDLANKVFDNM-----LERSL-------VSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 164 ~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m-----~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.|+.|.- ..+-.-+..+...|.++.|.-+.+-+ ..+++ .+...+..++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444433 33445566777889999888777664 12332 2556677888999999999999998754
Q ss_pred c--cCCCh-hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 230 L--FEPDG-YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 230 ~--~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
. ..|.. .+.+++-. ...... .. ....+..+---+..+|.+.|+.++|..+++.++
T Consensus 92 ~~k~l~k~~s~~~~~~~---~ss~p~----------s~---~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGN---SASTPQ----------SQ---CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccccc---cCCCcc----------cc---cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4 21211 11111100 000000 00 123344444557778888888888888888887
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.81 E-value=51 Score=24.84 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
..++|.-+-+.+... +. ...+--+-+..+...|++++|..+.+....||...|-+|-.+ +.|..+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~~---~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLK---GE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHT---TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 345555555555544 32 222222334566788999999999999999999999887664 67888888888877
Q ss_pred HhhhcCCCccHHHHHH
Q 038206 330 LVVEESFSPNSITFVG 345 (614)
Q Consensus 330 m~~~~g~~p~~~t~~~ 345 (614)
+ ...| .|....|..
T Consensus 95 l-a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 L-ARSQ-DPRIQTFVN 108 (116)
T ss_dssp H-TTCC-CHHHHHHHH
T ss_pred H-HhCC-CHHHHHHHH
Confidence 7 4444 555555543
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.73 E-value=84 Score=27.00 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~ 247 (614)
++..+-...+.+.++.|+.+....+.+.+..+|...-...+.++.+.|..+ ++..+..+.. .+|...-...+.+...
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK--DEDGWVRQSAADALGE 169 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 444444555555555555433333333344444444444444444444432 2333332221 2344444444444444
Q ss_pred hCc
Q 038206 248 LAT 250 (614)
Q Consensus 248 ~~~ 250 (614)
.+.
T Consensus 170 ~~~ 172 (211)
T 3ltm_A 170 IGG 172 (211)
T ss_dssp HCS
T ss_pred hCc
Confidence 443
No 268
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=58.81 E-value=85 Score=30.26 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHHHHHHHhc-CChhHHHHHHhcCCCCC----hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 71 YSRIIHFASF-ADLDYAFRVFYQIENPN----SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 71 ~~~li~~~~~-g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
...+|.=|-. |++++|.+.++++..|+ .+.+..+..++-+....-+.+-.++..+...++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 4566777777 99999999999998875 2344444445544311224455777778776655
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=55.68 E-value=82 Score=25.57 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.7
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
--|+ .+.|+++.|.+..+.+++..|. |...
T Consensus 84 Avg~-ykl~~Y~~Ar~y~d~lL~~eP~-n~QA 113 (144)
T 1y8m_A 84 TIGC-YKLGEYSMAKRYVDTLFEHERN-NKQV 113 (144)
T ss_dssp HHHH-HTTTCHHHHHHHHHHHHHTCCC-CHHH
T ss_pred HHHH-HHhhhHHHHHHHHHHHHhcCCC-cHHH
Confidence 3355 7788888888888888888887 6543
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.38 E-value=66 Score=26.45 Aligned_cols=84 Identities=6% Similarity=-0.040 Sum_probs=52.5
Q ss_pred hHHHHHHhcCCC-CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHH
Q 038206 84 DYAFRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIF 162 (614)
Q Consensus 84 ~~A~~~f~~m~~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 162 (614)
+.+.+.|...+. +|-.-|-.+---|+.. .+++.++|..|...|+..--..-|..-...+...|++.+|.+++..-+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544433 3333333333344443 345888888888888663334456666667777888888888888888
Q ss_pred HhCCCCch
Q 038206 163 KRGLVSDV 170 (614)
Q Consensus 163 ~~g~~~~~ 170 (614)
+.+-+|-.
T Consensus 129 ~~~A~P~~ 136 (152)
T 4a1g_A 129 QNQAEPRE 136 (152)
T ss_dssp HTTCBSHH
T ss_pred HcCCccHH
Confidence 88777743
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.63 E-value=1.6e+02 Score=27.84 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHhhhcCCCccHHHHHHHHHHHh
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF----DRLVVEESFSPNSITFVGVLSACN 351 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~~g~~p~~~t~~~ll~a~~ 351 (614)
|.++..-|.+.+++++|.+++-. =...+.++|+...|-++- +-. .+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy-~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTF-RQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Confidence 45566678899999999987643 123455677766655444 444 66788888888777777766
Q ss_pred ccCC--HHHHHHHHHHHHH---hcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCc
Q 038206 352 HRGM--VSEGRDYFDVMIN---EYNIT--PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 352 ~~g~--~~~a~~~~~~~~~---~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 424 (614)
.... ++. ..+.+.+++ +.|-. -++.....+...|.+.+++.+|+.-|- .+..+....+..++-.+ ...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew-~~~~~ 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEW-YKQDE 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHH-HHTSC
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHH-HHhcC
Confidence 5443 221 222222221 22322 356777789999999999999998874 34344446666666555 33322
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHH-HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYV-LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.. ....|. -.+--|.-.|+...|..+++...+
T Consensus 183 ~~----------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SH----------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GG----------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc----------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 122222 223345566788888887766554
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.09 E-value=1.1e+02 Score=27.40 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=10.2
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038206 384 DLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m 402 (614)
...++.|+.+-+..+++..
T Consensus 224 ~~A~~~~~~~~v~~Ll~~~ 242 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQE 242 (285)
T ss_dssp HHHHHTTCHHHHHHHHHSS
T ss_pred HHHHHcCCHHHHHHHHhcc
Confidence 3344556666655555533
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.54 E-value=73 Score=27.60 Aligned_cols=58 Identities=10% Similarity=-0.117 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 170 (614)
+...++.++|..|...|+..--..-|..-...+...|++.+|.+++..-++.+-+|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4466888888888888766233445666666667778888888888887777766643
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.49 E-value=1.2e+02 Score=26.17 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=44.2
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcch---HHHHHHHHHccCCcHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT---FPFALKACAYLFAFSQG 154 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t---~~~ll~~~~~~~~~~~a 154 (614)
|+++....+++.-.. ++..-++. +...++. |+. ++++.+.+.|.. ++... -.+.+...+..|+.+
T Consensus 20 g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~-~~~----~~v~~Ll~~~~~-~~~~~~~~~~t~L~~A~~~~~~~-- 90 (240)
T 3eu9_A 20 GIYERCRELVEAGYDVRQPDKENVTL-LHWAAIN-NRI----DLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLS-- 90 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHT-TCH----HHHHHHHHTTCC-TTCCBTTTTBCHHHHHHHHTCHH--
T ss_pred CChHHHHHHHHcCCCcCCCCCCCCCH-HHHHHHh-CCH----HHHHHHHHcCCc-chhhcCCcCCChhHHHHHcCCHH--
Confidence 666666666654332 22222222 3333444 554 233444444433 22111 112333333445543
Q ss_pred HHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhh
Q 038206 155 KQAHAHIFKRGLVSDVY--INNSLIHFYASCGHLDLANKVFDN 195 (614)
Q Consensus 155 ~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 195 (614)
+.+.+++.|..++.. .....+...++.|+.+-+..+++.
T Consensus 91 --~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 91 --MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp --HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 333444555444321 111233444556666666655554
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.23 E-value=1.3e+02 Score=25.83 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 216 (614)
++..+-...+..+++.|+.+....+.+.+..+|...-...+.++.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 4455555555555555554333334444444444443344444444443
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.39 E-value=2.7e+02 Score=29.34 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
-+...|++++|..+|+- .|+++.|++++++....
T Consensus 452 ~ae~~G~~~dAi~LY~L------------------a~~~d~vl~lln~~Ls~ 485 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQL------------------AEEYDIVITLVNSLLSD 485 (661)
T ss_dssp HHHHTTCHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH------------------hcCHHHHHHHHHHHHHH
Confidence 45567888888877654 45666666666666544
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=48.23 E-value=44 Score=30.56 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 384 DLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..+.+.|++++|++....- +-+| |...=..|+.-+ +-.|++++|.+=++...++.|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLL-cv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELL-CIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888887765543 4455 455555566666 7778888888888888888776
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.12 E-value=1.4e+02 Score=28.54 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhcCCCccHH
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRD---LTSWNSIILGFALHGR--AEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
.+.++.=|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+ ...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L-~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHH-HHCCCCCHHH
Confidence 5678888999999999999999998763 3445556666655433 34577888877 6666544443
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.90 E-value=44 Score=33.17 Aligned_cols=31 Identities=0% Similarity=-0.218 Sum_probs=19.7
Q ss_pred CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
...+...|...+.- ..+++.+.+.+|...|.
T Consensus 346 s~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 346 KTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp SEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred ceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 34556666666543 46677778888876664
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.10 E-value=1.2e+02 Score=29.69 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=9.1
Q ss_pred CChhHHHHHHhcCCC
Q 038206 81 ADLDYAFRVFYQIEN 95 (614)
Q Consensus 81 g~~~~A~~~f~~m~~ 95 (614)
|+++-...+++.-..
T Consensus 25 g~~~~v~~Ll~~g~~ 39 (437)
T 1n11_A 25 GHLPIVKNLLQRGAS 39 (437)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 666666666665433
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.01 E-value=2.8e+02 Score=28.92 Aligned_cols=411 Identities=9% Similarity=-0.056 Sum_probs=202.3
Q ss_pred hhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCC
Q 038206 34 SSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSV 112 (614)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~ 112 (614)
..|..+....... ...++.+.+.+..-.|.. . .+-+.-+..+.+ +++......+.. +..+...-.....+....
T Consensus 41 l~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~-~-~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~- 115 (618)
T 1qsa_A 41 LEYRQITDDLMNQ-PAVTVTNFVRANPTLPPA-R-TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNT- 115 (618)
T ss_dssp HHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHH-H-HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhCcccC-CHHHHHHHHHHCCCChhH-H-HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHc-
Confidence 3555555544322 224666666665322122 2 344555555665 888888887766 323444444456677777
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHH--HHHHHHHHHhC-----------CCCch-hHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG--KQAHAHIFKRG-----------LVSDV-YINNSLIH 178 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~li~ 178 (614)
|+..+|....+.+-..|. ........++..+.+.|.+... .+=...+...| +.++. .....++.
T Consensus 116 G~~~~a~~~~~~lW~~~~--~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~a 193 (618)
T 1qsa_A 116 GQSEEAWQGAKELWLTGK--SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS 193 (618)
T ss_dssp TCHHHHHHHHHHHHSCSS--CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888888888877773 3455677888887766655432 22222333222 11111 11122222
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH----HhhCch
Q 038206 179 FYASCGHLDLANKVFDNMLERSLV---SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC----AGLATL 251 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~----~~~~~~ 251 (614)
.+.+ ...+....... .++.. .+..-+.-+.+. +.+.|..+|.........+......+-... ...+..
T Consensus 194 l~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~ 268 (618)
T 1qsa_A 194 LANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVT 268 (618)
T ss_dssp HHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCC
T ss_pred HHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 2221 22222222221 11211 112223334443 778899888887654222333333333222 233313
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC--C-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR--D-LTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
..+...+...... . .+.....-.+....+.|+++.|...|+.|... + ....-=+-.++...|+.++|..+|.
T Consensus 269 ~~~~~~~~~~~~~---~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 269 DEQAKWRDDAIMR---S--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp HHHHHHHHHHHHT---C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHhcccc---C--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444433332 2 22223334445556779999999999999753 2 2222223446677899999999998
Q ss_pred HHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-h---h--HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 329 RLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-L---E--HYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 329 ~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~--~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.. .. +. +|-.++.+ .+.|.... . ......+. . . ..-.-+..+...|....|...+...
T Consensus 344 ~~-a~----~~--~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~ 407 (618)
T 1qsa_A 344 QL-MQ----QR--GFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (618)
T ss_dssp HH-HT----SC--SHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hc----CC--ChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHH
Confidence 87 33 22 34333322 22221000 0 00000010 0 0 1112345677889999998877766
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC--CCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccC
Q 038206 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG--ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478 (614)
Q Consensus 403 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 478 (614)
.-..+......+.... ...|..+.+..........+.. .-+..|..++..+++.-.++...-.---..+.+..|.
T Consensus 408 ~~~~~~~~~~~la~~a-~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 408 VKSKSKTEQAQLARYA-FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HTTCCHHHHHHHHHHH-HHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HhcCCHHHHHHHHHHH-HHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 2233433333333333 5667777776655432221100 0022455666666665555554433223345555553
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.32 E-value=1.2e+02 Score=29.85 Aligned_cols=95 Identities=6% Similarity=-0.055 Sum_probs=64.4
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHH--
Q 038206 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRG--LVSDVYINNSLIHFYASCGHLDLANKVFDNML-----ERSLVSWNV-- 206 (614)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~~~~~~~~~-- 206 (614)
.+...+...+.+.|+++.|.+.+..+.... ...-..++-.++.++...+++..+....++.. .+|....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367778888888999999999998887743 33345667788888888899888887777651 122221111
Q ss_pred --HHHHHHhcCChhHHHHHHHHhhhc
Q 038206 207 --MIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 207 --li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
-...+...+++.+|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 112234568888888888776554
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=42.97 E-value=55 Score=29.89 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...+.|.++++++....-++ .-+-|...-..|+..|+-.|+++.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556677777666666554 33445666666777777777777776655544
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.88 E-value=1.8e+02 Score=25.19 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=67.9
Q ss_pred HHHHHHHhCC-CCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-CchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 394 EALHLVSNMP-MKPDA---VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-CSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 394 ~A~~~~~~m~-~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
.+.+.|...+ .+-|. ..|-..+..| ..++......+|..|...++-- -+..|......+...|++++|.++++
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555542 23343 3555555543 1344678999999998876542 35667888999999999999999998
Q ss_pred HHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCc
Q 038206 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGY 522 (614)
Q Consensus 469 ~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 522 (614)
.=.+++-.| .+...+....+..+|.+.++
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCC
Confidence 887777766 12333444556678888777
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.26 E-value=1.5e+02 Score=24.89 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=6.9
Q ss_pred CChhHHHHHHhcC
Q 038206 81 ADLDYAFRVFYQI 93 (614)
Q Consensus 81 g~~~~A~~~f~~m 93 (614)
|+.+....++..-
T Consensus 16 g~~~~v~~ll~~~ 28 (201)
T 3hra_A 16 RDTKKVKEILQDT 28 (201)
T ss_dssp TCHHHHHHHHTCT
T ss_pred ccHHHHHHHHHcC
Confidence 5555555555443
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.60 E-value=1.8e+02 Score=26.49 Aligned_cols=22 Identities=0% Similarity=0.061 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc
Q 038206 175 SLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m 196 (614)
+.+...+..|+.+-+..+++.-
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTS
T ss_pred CHHHHHHHcCCHHHHHHHHhCC
Confidence 3344445556665555555543
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.60 E-value=1.6e+02 Score=24.44 Aligned_cols=57 Identities=5% Similarity=-0.027 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 172 (614)
+.+.++|..|...|+..--...|..-...+-..|++..|.+++..-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 457788999988887633344566666677778899999999998888887776543
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.47 E-value=1.3e+02 Score=26.62 Aligned_cols=103 Identities=8% Similarity=0.004 Sum_probs=59.5
Q ss_pred CCchHHHHHHHHHHHhc----CC---------hhHHHHHHhcCCC-CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 64 QHKTLLIYSRIIHFASF----AD---------LDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~----g~---------~~~A~~~f~~m~~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
.| ++..|-.-|.-... |. ++.+.+.|..... +|-.-|-.+---|+.. .+++.++|..|...|
T Consensus 69 dD-PL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~ 144 (223)
T 4aez_C 69 DD-PLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHH 144 (223)
T ss_dssp SC-THHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTT
T ss_pred CC-ChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCC
Confidence 45 43667666654333 21 3344444444433 3333333333344443 346778888888887
Q ss_pred CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch
Q 038206 130 NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV 170 (614)
Q Consensus 130 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 170 (614)
+..--...|..-...+-..|++.+|..+|..-++.+-+|-.
T Consensus 145 IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 145 IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 66233445666666677778888888888888877777643
No 289
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.04 E-value=2e+02 Score=24.27 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038206 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 216 (614)
|..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333333444444433333333333333443333333444444443
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.10 E-value=2e+02 Score=24.91 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHh
Q 038206 281 DMYCKCGSLDIARQVFE 297 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~ 297 (614)
...++.|+.+-+..+++
T Consensus 155 ~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 155 IHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33444555555544444
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.66 E-value=1.4e+02 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=17.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
-+..+....++++|++++++....
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456677778888888888777654
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.65 E-value=1.2e+02 Score=26.86 Aligned_cols=84 Identities=8% Similarity=-0.090 Sum_probs=42.9
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcc-------hHHHHHHHHH--ccCCcHHHHHHHHHHHHhC---------CCCchhHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKH-------TFPFALKACA--YLFAFSQGKQAHAHIFKRG---------LVSDVYINN 174 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~~~~ 174 (614)
|+.+....+++.+...|.. ++.. -.+.|..|+. +.|+.+-++.+++.-...+ +........
T Consensus 16 g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~ 94 (260)
T 3jxi_A 16 GSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ 94 (260)
T ss_dssp TCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESB
T ss_pred CCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCC
Confidence 7777766777766666644 4432 2233443332 5567766666665543311 000000112
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC
Q 038206 175 SLIHFYASCGHLDLANKVFDNML 197 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m~ 197 (614)
+.+...+..|+.+-+.-+++.-.
T Consensus 95 t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 95 TALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCC
Confidence 23444556677777777776543
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.43 E-value=1.7e+02 Score=23.09 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhcCC
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRD---LTSWNSIILGFALHGR--AEAALKYFDRLVVEESF 336 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~g~ 336 (614)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+ ...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L-~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHCCC
Confidence 4556777777777777777777776552 2334444445544432 34556666666 44443
No 294
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=34.42 E-value=13 Score=25.48 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.3
Q ss_pred CceEEEecCCccccccCCccCC
Q 038206 589 NVEIIVRDRARFHHFKDGSCSC 610 (614)
Q Consensus 589 ~~~~~~~~~~~~h~~~~g~~~~ 610 (614)
...|-+.|....|+|+|||-+-
T Consensus 7 ~k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEEE
T ss_pred eeeEecCCCcEEEEEcCCceeh
Confidence 3567889999999999998653
No 295
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=34.02 E-value=14 Score=22.29 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=8.4
Q ss_pred cCCccCCCCC
Q 038206 604 KDGSCSCMDY 613 (614)
Q Consensus 604 ~~g~~~~~~~ 613 (614)
.+|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999876
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.53 E-value=4.2e+02 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=14.6
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
.+|.+++.|... +.+++|..+....
T Consensus 233 l~nllLRnYL~~-~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNN-GEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHS-SCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcc-CcHHHHHHHHhcC
Confidence 455566666665 6666666555544
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.97 E-value=2.2e+02 Score=26.91 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRD 303 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~ 303 (614)
...++.-|...|++++|.+.++++..|.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 5677888888888888888888887663
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.95 E-value=1.6e+02 Score=24.17 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhcC
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRD---LTSWNSIILGFALHGR--AEAALKYFDRLVVEES 335 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~g 335 (614)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+ ...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L-~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHCC
Confidence 4456666777777777777777766542 2334444444444322 23455555555 4444
No 299
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.41 E-value=50 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 115 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
.++|.+.|.+|++.... +..-||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 46889999999888766 7778999888887
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.17 E-value=1.1e+02 Score=30.90 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHH-------HHHHHHhcCChhHHHHHHHHhhh
Q 038206 171 YINNSLIHFYASCGHLDLANKVFDNMLERSL-VSWNV-------MIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.++|.++..|...+.++.|.++.....-|.. .+-+. +...+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566666667777777777777766644421 11111 22344556666666666665544
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.61 E-value=2.1e+02 Score=25.44 Aligned_cols=23 Identities=9% Similarity=-0.152 Sum_probs=16.5
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHH
Q 038206 104 LIRACARSVDAKPQAIVLFQRMIE 127 (614)
Q Consensus 104 li~~~~~~~~~~~~A~~~~~~m~~ 127 (614)
-++.+... .++++|+++.++..+
T Consensus 24 eLDv~IA~-r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELAR-LRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHH
Confidence 35666677 888888888776654
No 302
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.53 E-value=2.6e+02 Score=23.42 Aligned_cols=145 Identities=11% Similarity=0.085 Sum_probs=64.9
Q ss_pred CCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH
Q 038206 93 IENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI 172 (614)
Q Consensus 93 m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 172 (614)
+..+|...-...+.++.+. +.. ++...+.++... +|...-...+.++...++.+....+.. +. -.++..+
T Consensus 23 L~~~~~~vr~~A~~~L~~~-~~~-~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l---~d~~~~v 92 (201)
T 3ltj_A 23 LQDDSYYVRRAAAYALGKI-GDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIK-AL---KDEDGWV 92 (201)
T ss_dssp TTCSCHHHHHHHHHHHHHH-CCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHH
T ss_pred hcCCCHHHHHHHHHHHHhc-CCh-hHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHH-HH---cCCCHHH
Confidence 3344444444444444444 432 233333333321 444444444455555554333222222 21 1345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCc
Q 038206 173 NNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT 250 (614)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~ 250 (614)
-...+.++++.|+.+....+.+.+..+|...-...+.++.+.+.. +++..+..+.. .+|...-...+.+....+.
T Consensus 93 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 93 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK--DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc
Confidence 556666666666654444444444455554445555555555543 23333333322 2444444455555555544
No 303
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.96 E-value=2.2e+02 Score=24.52 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=8.7
Q ss_pred HhccCCHHHHHHHHHHH
Q 038206 350 CNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~ 366 (614)
....|+.+.+.++.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKAL 233 (237)
T ss_dssp SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555555555544
No 304
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=26.07 E-value=16 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=9.1
Q ss_pred ccccccchhhH
Q 038206 570 NLRVCKDCHEV 580 (614)
Q Consensus 570 ~~~~c~~~~~a 580 (614)
+||+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 69999999753
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.31 E-value=1.7e+02 Score=26.59 Aligned_cols=181 Identities=6% Similarity=-0.014 Sum_probs=83.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH---HHHHHHHHHHhccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLT-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS---ITFVGVLSACNHRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~---~t~~~ll~a~~~~g~ 355 (614)
+...++.|+.+-+..+++.-..++.. -++. +...+..|+.+-+..++ +.|..|+. ...+.|.. .+..|.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll-----~~ga~~~~~d~~g~t~L~~-A~~~g~ 107 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFP-LHQAATLEDTKIVKILL-----FSGLDDSQFDDKGNTALYY-AVDSGN 107 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCH-HHHHTTSSSCHHHHHHH-----HTTCCTTCCCTTSCCHHHH-HHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH-----HCCCCCCCcCCCCCcHHHH-HHHcCC
Confidence 44455567776666666543221111 1222 23334556654433333 33444432 22233333 334566
Q ss_pred HHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHhcCchHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLE---HYGCLVDLLARAGNIDEALHLVSNMPMKPDA-VIWRSLLDACCKKHASVVLSEEV 431 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~ 431 (614)
.+-...+++. |..++.. -+.+.+...+..|+.+-+.-+++.-....+. .-++.|..+ ...|+.+-+..+
T Consensus 108 ~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A--~~~g~~~~v~~L 180 (285)
T 3kea_A 108 MQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHIT--IKNGHVDMMILL 180 (285)
T ss_dssp HHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHH--HHcChHHHHHHH
Confidence 5544444332 4444321 1123444456677777766666654322232 344555444 456777766666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCC
Q 038206 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEP 479 (614)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 479 (614)
++.-...... +..-....+..-+..|+. ++.+.+.+.|..++.
T Consensus 181 l~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 181 LDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 6554443332 222222212223344553 455556677776543
No 306
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=24.96 E-value=30 Score=25.29 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHHHhhCCccCCCCccc
Q 038206 501 PQTKQIYGFLDLIDEKLKSRGYTPDYSQAA 530 (614)
Q Consensus 501 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~ 530 (614)
|...++.+.+++-..+++..|+.||...+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 455678888888889999999999966543
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.56 E-value=2.4e+02 Score=23.06 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCC
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM--VSEGRDYFDVMINEYNITP 374 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p 374 (614)
..+.++.-|...|+.++|.+.++++ ..... -.......+..++-+.+. .+....++..+.+. ++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL-~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~-~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcC
Confidence 3567888999999999999999988 32111 122444455555655322 45566777777653 4443
No 308
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.78 E-value=4.5e+02 Score=24.52 Aligned_cols=129 Identities=10% Similarity=0.169 Sum_probs=73.1
Q ss_pred CchHHHHHHHHHHHcC-----CCCCCcchHHHH---HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 114 AKPQAIVLFQRMIEQG-----NVLPDKHTFPFA---LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 114 ~~~~A~~~~~~m~~~~-----~~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
..++|..+|..+...- .. |+....... +..+.+..+ -+++..+.+.|+.|..++..-++..+++.=.
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYR-PDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGS-TTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hHHHHHHHHHHHHHhcCchhcCC-CChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 3467888888776532 12 443222221 122222222 3677888888999988888889988988888
Q ss_pred HHHHHHHHhhcCC--CChhHHHH--HHH----HHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhC
Q 038206 186 LDLANKVFDNMLE--RSLVSWNV--MID----AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA 249 (614)
Q Consensus 186 ~~~A~~~f~~m~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~ 249 (614)
++.+.+++|.+.. +....+-+ ++. ...+..++++.+..++.... ..+......++.-.....
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p--~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP--NLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC--CCCHHHHHHHHHHHHhCC
Confidence 9999999988722 22222222 111 12334467777777766432 123344455554433333
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.58 E-value=1e+02 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHH
Q 038206 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 184 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 221 (614)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999999998899999999987767655443
No 310
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.41 E-value=2.7e+02 Score=24.81 Aligned_cols=94 Identities=11% Similarity=-0.041 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCC-------CcchHHHHHHHHH--ccCCcHHHHHHHHHHHHhC----
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-------DKHTFPFALKACA--YLFAFSQGKQAHAHIFKRG---- 165 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 165 (614)
.-++.|..+ ++. |+.+.+..+++.....+.. . |..-.+.|..++. +.|+.+-++.+++.-...+
T Consensus 12 ~g~t~L~~A-~~~-g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 12 YDRRSIFDA-VAQ-SNCQELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp CCHHHHHHH-HHT-TCSSTTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHH-HHc-CCHHHHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 334444433 334 6666666666655554432 1 2233444444443 2466665555555432211
Q ss_pred -----CC-CchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 166 -----LV-SDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 166 -----~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
.. .|..-. +.+...+..|+.+-+..+++.-
T Consensus 89 ~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 89 FVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCC
Confidence 00 111122 2333445567777776666654
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.22 E-value=2.3e+02 Score=24.31 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI---NNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
.+...+..|+.+- .+.+++.|..++... ....+...+..|+.+-+..+++.-
T Consensus 45 ~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 99 (240)
T 3eu9_A 45 LLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99 (240)
T ss_dssp HHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence 4444555566543 344445554333211 223444555667777666666543
No 312
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.58 E-value=2.3e+02 Score=20.65 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhH
Q 038206 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219 (614)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 219 (614)
...+++.+.+.|+-.... +..+- +.....+.|.++++.++.+...+|..++.++.+.+...-
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 345666677666433222 22221 135678889999999998888899999999888775443
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.35 E-value=2.9e+02 Score=21.74 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCC
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM--VSEGRDYFDVMINEYNITP 374 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p 374 (614)
..+.++.-|...|+.++|.+.++++ ..... -.......+..++-+.+. .+....++..+.+. |+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL-~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh-CCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcC
Confidence 3567888999999999999999998 42111 122444455556655432 45677777777653 5444
No 314
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.32 E-value=3.2e+02 Score=22.32 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCC-CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCcc
Q 038206 426 VLSEEVAKQVIESEGGI-CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 477 (614)
+...++|..|...++-. -+..|......+...|++++|.++++.=.+++-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34788999998776542 34567888889999999999999998877777666
No 315
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.71 E-value=3.8e+02 Score=22.93 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=39.4
Q ss_pred HHcCCCCchHHHHHHHHHHHcCCCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhc
Q 038206 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHT--FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI--NNSLIHFYASC 183 (614)
Q Consensus 108 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 183 (614)
.++. |+.+-+..+++.+.+.+.. ++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..
T Consensus 16 A~~~-g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 16 AVVQ-GNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHT-TCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHc-CCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 3444 6665555555555554433 33221 112233333445543 3344445555443221 12334444566
Q ss_pred CCHHHHHHHHhhcC
Q 038206 184 GHLDLANKVFDNML 197 (614)
Q Consensus 184 g~~~~A~~~f~~m~ 197 (614)
|+.+-...+++...
T Consensus 90 ~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 90 RSPTCLRALLDSAA 103 (241)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcCC
Confidence 77777776766543
No 316
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.52 E-value=70 Score=21.37 Aligned_cols=46 Identities=9% Similarity=-0.127 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccC
Q 038206 431 VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKE 478 (614)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 478 (614)
..+.+.++.|..+..+...++. +..|+.+.|...+-.|...+..|+
T Consensus 12 ~l~~L~emFP~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 12 DLKAIQDMFPNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 3344445555544433222221 344667777777766666555553
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.05 E-value=5e+02 Score=24.08 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMPKR 302 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~~~ 302 (614)
+.++.-|...|+.++|.+.++++..|
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 34555555556666666666655544
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.02 E-value=1e+02 Score=22.96 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHH
Q 038206 51 QIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQA 118 (614)
Q Consensus 51 ~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A 118 (614)
.+...+.+.|+- .. .-...+- .... .+.+.|+++++.++.+...+|..++.++... |+..-|
T Consensus 25 ~vld~L~~~~vl-t~---~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et-~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-RP---HMIEDIQ-RAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDT-GQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-CH---HHHHHHH-TSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHcCCC-CH---HHHHHHH-hccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHc-CcHHHH
Confidence 355666666654 22 2222222 2212 4678888888888888888888888888776 665444
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.15 E-value=1.7e+02 Score=25.77 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCC-CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCcc
Q 038206 426 VLSEEVAKQVIESEGGI-CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 477 (614)
+....+|..|...++-. -+..|......+...|++++|..+|+.=.+++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46778999998876542 34667888899999999999999998877776665
Done!