BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038208
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 151/267 (56%), Gaps = 41/267 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLS-----------------ELMRLLVHSGC 43
M+ + SMSLK +IE++I +IIH HG+ ITLS LMR L H+G
Sbjct: 24 MYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDNVQRLMRYLAHNGF 83
Query: 44 F---NKTKVNGQEEAYGLTASSTLLIKENPFSLS-------------------SWFKGTE 81
F ++ +EEAY LT +S LL+K L+ W +
Sbjct: 84 FEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEED 143
Query: 82 LTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVG 141
LTL+ G WEFLN+NP N +N+A+ASDS+++ + +C +FEGL S+VDVG
Sbjct: 144 LTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMIN--LAMKDCNLVFEGLESIVDVG 201
Query: 142 GGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVF 201
GGNG+ +II E FP + C V D P VV NL ++NL Y+ GDMF VP ADA L K V
Sbjct: 202 GGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLKAVL 261
Query: 202 HGLGDEDGLKILKKRREAIASNGERGK 228
H D+D +KILKK +EA+ S+G+RGK
Sbjct: 262 HDWTDKDCIKILKKCKEAVTSDGKRGK 288
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 153/264 (57%), Gaps = 40/264 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLS-----------------ELMRLLVHSGC 43
++ + SMSLK A+E++I +II HG+ I+LS LMR L H+G
Sbjct: 24 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFSLS-------------------SWFKGTELTL 84
F + +EE+Y LT +S LL++ + L+ W +LTL
Sbjct: 84 FEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G G FW+FL++NP N FN+AMASDS+++ + +C +F+GL S+VDVGGG
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLESIVDVGGGT 199
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF +P ADA L K + H
Sbjct: 200 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 259
Query: 205 GDEDGLKILKKRREAIASNGERGK 228
D+D L+ILKK +EA+ ++G+RGK
Sbjct: 260 TDKDCLRILKKCKEAVTNDGKRGK 283
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 149/264 (56%), Gaps = 40/264 (15%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSELM-----------------RLLVHSGC 43
++ + S SLK A+E +I +II HG+ I+LS L+ R L H+G
Sbjct: 24 IYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLXRYLAHNGF 83
Query: 44 FNKTKVNGQEEAYGLTASSTLLIKENPFSLS-------------------SWFKGTELTL 84
F + +EE+Y LT +S LL++ + L+ W +LTL
Sbjct: 84 FEI--ITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 85 WGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G G FW+FL++NP N FN+A ASDS+++ + +C +F+GL S+VDVGGG
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLIN--LALRDCDFVFDGLESIVDVGGGT 199
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ ++II E FP +KC V D P VV NL ++NL Y+ GD F +P ADA L K + H
Sbjct: 200 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYILHNW 259
Query: 205 GDEDGLKILKKRREAIASNGERGK 228
D+D L+ILKK +EA+ ++G+RGK
Sbjct: 260 TDKDCLRILKKCKEAVTNDGKRGK 283
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 151/273 (55%), Gaps = 47/273 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD IH HG+ +TLSEL +RLL H+G
Sbjct: 17 VYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGF 76
Query: 44 FNKTKVNGQEE------AYGLTASSTLLIKENPFSLSSWFKGT----------------- 80
F KT V G+E AY LT S LLI P LSS KG
Sbjct: 77 FAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFN 136
Query: 81 ---ELTLWGTVHGIKFWEFLNQNPGIN--QRFNEAMASDSEIMTSFVVKAECKQIFEGLG 135
E TL+ G FW+FLN++ + F +AMASDS + +V E K++FEGL
Sbjct: 137 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LVLQENKRVFEGLE 194
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
SLVDVGGG G +++I E FP +KCTV D P VV NL +NL ++ GDMF+ +P ADA
Sbjct: 195 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 254
Query: 196 LFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
L K V H DE LKILK +EAI+ G+ GK
Sbjct: 255 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGK 287
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 151/273 (55%), Gaps = 47/273 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD IH HG+ +TLSEL +RLL H+G
Sbjct: 18 VYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGF 77
Query: 44 FNKTKVNGQEE------AYGLTASSTLLIKENPFSLSSWFKGT----------------- 80
F KT V G+E AY LT S LLI P LSS KG
Sbjct: 78 FAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFN 137
Query: 81 ---ELTLWGTVHGIKFWEFLNQNPGIN--QRFNEAMASDSEIMTSFVVKAECKQIFEGLG 135
E TL+ G FW+FLN++ + F +AMASDS + +V E K++FEGL
Sbjct: 138 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LVLQENKRVFEGLE 195
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
SLVDVGGG G +++I E FP +KCTV D P VV NL +NL ++ GDMF+ +P ADA
Sbjct: 196 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 255
Query: 196 LFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
L K V H DE LKILK +EAI+ G+ GK
Sbjct: 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGK 288
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 151/273 (55%), Gaps = 47/273 (17%)
Query: 1 MFNHLSSMSLKCAIELSIADIIHCHGRAITLSEL-----------------MRLLVHSGC 43
++N +SSM+LK A+EL IAD IH HG+ +TLSEL +RLL H+G
Sbjct: 14 VYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGF 73
Query: 44 FNKTKVNGQEE------AYGLTASSTLLIKENPFSLSSWFKGT----------------- 80
F KT V G+E AY LT S LLI P LSS KG
Sbjct: 74 FAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFN 133
Query: 81 ---ELTLWGTVHGIKFWEFLNQNPGIN--QRFNEAMASDSEIMTSFVVKAECKQIFEGLG 135
E TL+ G FW+FLN++ + F +AMASDS + +V E K++FEGL
Sbjct: 134 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LVLQENKRVFEGLE 191
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
SLVDVGGG G +++I E FP +KCTV D P VV NL +NL ++ GDMF+ +P ADA
Sbjct: 192 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 251
Query: 196 LFKLVFHGLGDEDGLKILKKRREAIASNGERGK 228
L K V H DE LKILK +EAI+ G+ GK
Sbjct: 252 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGK 284
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 122/261 (46%), Gaps = 45/261 (17%)
Query: 8 MSLKCAIELSIADIIHCHG--------------------RAITLSELMRLL---VHSGCF 44
M LK A+EL + +II G + L ++RLL + C
Sbjct: 34 MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCS 93
Query: 45 NKTKVNGQ-EEAYGLTASSTLLIK-ENPFSLS-------------SWFKGTELTLWGTV- 88
+T+ +G+ + YGL + L+K E+ S+S SW+ + L G +
Sbjct: 94 VRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIP 153
Query: 89 ----HGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGN 144
+G+ +E+ +P N+ FN+ M+ S I ++ E FEGL SLVDVGGG
Sbjct: 154 FNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKIL--ETYTGFEGLKSLVDVGGGT 211
Query: 145 GSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204
G+ I +P IK DLPHV+ + P ++++ GDMF +P ADA K + H
Sbjct: 212 GAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDW 271
Query: 205 GDEDGLKILKKRREAIASNGE 225
DE LK LK EA+ NG+
Sbjct: 272 SDEHCLKFLKNCYEALPDNGK 292
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 57 GLTASSTLLIKENPFSLSSWFKGTELTLWGTV-----HGIKFWEFLNQNPGINQRFNEAM 111
G++ ++ L+ ++ + SW+ + L G + +G+ +E+ +P N+ FNE M
Sbjct: 122 GVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGM 181
Query: 112 ASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVAN 171
+ S I+T ++ E FEGLG+LVDVGGG G+ I+ +P IK DLPHV++
Sbjct: 182 KNHSIIITKKLL--ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239
Query: 172 LPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225
P+ + ++ GDMF+ VP D L K + H D+ +LK +A+ ++G+
Sbjct: 240 APQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGK 293
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 38/225 (16%)
Query: 31 LSELMRLLVHSGCFNKTKVN----GQEEAYGLTASSTLLIKEN--------------PFS 72
L ++RLL T G E YGL+ L+ + P
Sbjct: 85 LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPAL 144
Query: 73 LSSWFKGTE------LTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAE 126
L W E + L+ VHG+ +EF+ ++ +NQ FN++M V E
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD--------VCATE 196
Query: 127 CKQI------FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKY 180
K++ FEG+ +LVDVGGG+G +I +P IK DLP V+ N P +++
Sbjct: 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256
Query: 181 IAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225
+ GDMF VP DA + K V H DE ++ L +A++ NG+
Sbjct: 257 VGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK 301
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 57 GLTASSTLLIKENPFSLSSWFKGTELTLWGTV-----HGIKFWEFLNQNPGINQRFNEAM 111
G++ + LL+ + L WF + L G + +G+ +++ + IN+ FN+ M
Sbjct: 124 GVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGM 183
Query: 112 ASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVAN 171
+S+S I ++ E FEGL ++VDVGGG G+ + +I +P I DLPHV+ +
Sbjct: 184 SSNSTITMKKIL--EMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQD 241
Query: 172 LPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225
P ++++ GDMF VP DA K + H DE LK+LK A+ +G+
Sbjct: 242 APAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGK 295
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 51 GQEEAYGLTASSTLLIKEN--------------PFSLSSW--FK----GTELTLWGTVHG 90
G E YGL+ L+ + P L W FK ++ L+ VHG
Sbjct: 109 GAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHG 168
Query: 91 IKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRI 150
+ +EF ++ NQ FN++ T E FEG+ +LVDVGGG+G +
Sbjct: 169 VTKYEFXGKDKKXNQIFNKSXVD--VCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLEL 226
Query: 151 ISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGL 210
I +P IK DLP V+ N P ++++ GD F VP DA + K V H DE +
Sbjct: 227 IISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCI 286
Query: 211 KILKKRREAIASNGE 225
+ L +A++ NG+
Sbjct: 287 EFLSNCHKALSPNGK 301
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 88 VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSF 147
+G FW+ +++P + FN A S S V A F G + VD+GGG GS
Sbjct: 160 ANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAA---YDFSGAATAVDIGGGRGSL 216
Query: 148 SRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVPP-ADAFLFKL 199
+ +AFPG++ T+L+ P V E D + + GD F+ +P AD +L K
Sbjct: 217 XAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKH 276
Query: 200 VFHGLGDEDGLKILKK 215
V H D+D ++IL++
Sbjct: 277 VLHDWDDDDVVRILRR 292
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVA----NLPE-TDNLKYIAGDM 185
F G++ DVGGG G F + PG++ +LD VVA + P+ K + GD
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241
Query: 186 FQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225
+ VP AD + K + H GDED ++IL R ++G
Sbjct: 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGR 281
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 35/220 (15%)
Query: 31 LSELMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK-ENPFS----------LSSWFKG 79
+ LMRLLV F +G Y T +S LL E F ++W
Sbjct: 58 IHRLMRLLVAFEIFQGDTRDG----YANTPTSHLLRDVEGSFRDMVLFYGEEFHAAWTPA 113
Query: 80 TELTLWGT-----VHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGL 134
E L GT G F+ +L + P +RF AM + S + E ++ +
Sbjct: 114 CEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKA------SNLAFHEIPRLLDFR 167
Query: 135 G-SLVDVGGGNGSFSRIISEAFPGIKCTVLDLP-------HVVANLPETDNLKYIAGDMF 186
G S VDVGGG+G ++ I +A P + +LD +++L + + + GDM
Sbjct: 168 GRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227
Query: 187 QFVPP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225
Q VP D +L + L + L++L REA+A +G
Sbjct: 228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGR 267
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 89 HGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFS 148
+G FWE L+ + + F+ M+ D ++ ++ A+ + + ++DVGGGNG
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDL--AYEAPADAYD-WSAVRHVLDVGGGNGGML 197
Query: 149 RIISEAFPGIKCTVLDLP-------HVVANLPETDNLKYIAGDMFQFVP-PADAFLFKLV 200
I+ P ++ T+++L A+ D + GD F+ +P AD L V
Sbjct: 198 AAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 257
Query: 201 FHGLGDEDGLKILKKRREAIASNGE 225
DED L IL+ A+ G
Sbjct: 258 LLNWSDEDALTILRGCVRALEPGGR 282
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 104 NQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVL 163
N F E S+++ +++ E K +G+ ++DVGGG G S + + FP + T+L
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLE-EAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL 220
Query: 164 DLPHVVANLPE-------TDNLKYIAGDMF-QFVPPADAFLFKLVFHGLGDEDGLKILKK 215
+LP + + E D ++ IA D++ + P ADA LF + + ++ + KK
Sbjct: 221 NLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKK 280
Query: 216 RREAIASNG 224
+A+ S G
Sbjct: 281 AFDAMRSGG 289
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 137 LVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVA------NLPETDNLKYIAGDMFQF-V 189
+ D+GGG G+ ++ +PG K TV D+P VV + E + + + GD F+ +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 190 PPADAFLFKLVFHGLGD 206
P AD ++ V H D
Sbjct: 243 PEADLYILARVLHDWAD 259
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 103/256 (40%), Gaps = 40/256 (15%)
Query: 6 SSMSLKCAIELSIADIIHCHGRAI--------TLSE-LMRLLVHSGCFNKTKVNGQEEAY 56
+ M ++ A L + D I R + T E L+RL+ H + + E +
Sbjct: 32 TPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGE-F 90
Query: 57 GLTASSTLLIKENPFSLSSWFKGTELT-------------------LWGTVHGIKFWEFL 97
T LL ++P + +W T+ + +++G F+E L
Sbjct: 91 VPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDL 150
Query: 98 NQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPG 157
P + F+ +A D ++ +F A + + ++DVGGG G F+ I+ P
Sbjct: 151 AGRPDLRASFDSLLACDQDV--AFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPH 207
Query: 158 IKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFKLVFHGLGDEDG 209
+ TVL++ V +D + + GD F+ +P ADA + V D D
Sbjct: 208 VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDA 267
Query: 210 LKILKKRREAIASNGE 225
++IL + EA+ G
Sbjct: 268 VRILTRCAEALEPGGR 283
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETD-----NLKYIAGDM--FQF 188
++D+G G G S + E +P T++D+ + + + +KYI D + F
Sbjct: 47 DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF 106
Query: 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224
D + L H L DED ++ K+ + +G
Sbjct: 107 EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESG 142
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 46/258 (17%)
Query: 6 SSMSLKCAIELSIADIIHCHGR------------AITLSELMRLLVHSGCFNKTKVNGQE 53
+ M+++ A L +AD I R A +L L+R LV G F + +GQ
Sbjct: 18 TPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTR---DGQ- 73
Query: 54 EAYGLTASSTLLIKENPFSLSSWF-------KG------------TELTLWGTVHGIKFW 94
YGLT L ++ W +G T + +G FW
Sbjct: 74 GVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFW 133
Query: 95 EFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA 154
E L +P ++ F+ M+ E+ + + K + LG +VDVGGG+G + A
Sbjct: 134 EDLGSDPVLSASFDTLMSHHLELDYTGIA---AKYDWAALGHVVDVGGGSGGLLSALLTA 190
Query: 155 FPGIKCTVLDL--PHVVANLPETDN-----LKYIAGDMFQFVPP-ADAFLFKLVFHGLGD 206
+ TVLDL P A+ D + + G F +P A ++ V H D
Sbjct: 191 HEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDD 250
Query: 207 EDGLKILKKRREAIASNG 224
+ IL++ EA S G
Sbjct: 251 LSAVAILRRCAEAAGSGG 268
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 89 HGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFS 148
+G FWE L+ + + F+ + D ++ ++ A+ + + ++DVGGGNG
Sbjct: 141 YGRPFWEDLSADVALADSFDALXSCDEDL--AYEAPADAYD-WSAVRHVLDVGGGNGGXL 197
Query: 149 RIISEAFPGIKCTVLDLP-------HVVANLPETDNLKYIAGDMFQFVP-PADAFLFKLV 200
I+ P ++ T+++L A+ D + GD F+ +P AD L V
Sbjct: 198 AAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 257
Query: 201 FHGLGDEDGLKILKKRREAIASNGE 225
DED L IL+ A+ G
Sbjct: 258 LLNWSDEDALTILRGCVRALEPGGR 282
>pdb|1FLA|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57d Reduced
pdb|4NLL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57d Oxidized
Length = 138
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|1FVX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57n Oxidized
Length = 138
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|1FLD|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Oxidized
pdb|2FLV|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Reduced
(150k)
pdb|2FVX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Reduced
(277k)
pdb|5NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t
Semiquinone (150k)
Length = 138
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|3NLL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57a Oxidized
Length = 138
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|2FOX|A Chain A, Clostridium Beijerinckii Flavodoxin: Semiquinone
pdb|5NLL|A Chain A, Clostridium Beijerinckii Flavodoxin: Oxidized
pdb|5ULL|A Chain A, Clostridium Beijerinckii Flavodoxin: Reduced
Length = 138
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 144 NGSFSRIISEAFP-----GIKCTVLDLPHVVANLPETDNLK 179
NG + I+ AF G C+ D P+V +NLPET NLK
Sbjct: 80 NGCYGGYITNAFDDMIDLGGLCSQDDYPYV-SNLPETCNLK 119
>pdb|2FAX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: N137a Oxidized
(150k)
pdb|2FDX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant N137a Oxidized
pdb|6NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: N137a Reduced
(150k)
Length = 138
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|1FLN|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: D58p Reduced
pdb|4NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: D58p Oxidized
Length = 138
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 GGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE 174
G G+G + R E G C V++ P +V N P+
Sbjct: 89 GWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPD 122
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 137 LVDVGGGNGSFSRIISEAFPGIKCTVLDL 165
++DVG G+G + I+ A PG+ T +DL
Sbjct: 34 VIDVGTGSGCIAVSIALACPGVSVTAVDL 62
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 146 SFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYI 181
+ R ++E PG+ C+V + N+P TD L+ +
Sbjct: 108 NLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEV 143
>pdb|4E5S|A Chain A, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|B Chain B, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|C Chain C, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|D Chain D, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
Length = 331
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 150 IISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPPADAF 195
+I + G +CT+ D+ +A+ PE ++ IA F P F
Sbjct: 264 VIGKXQKGAECTIEDIQEXIASKPELAHIPIIANASFGHTTPIFTF 309
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 85 WGTVHGIKFWEFLNQNPG-INQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVG-- 141
WGTV I FW +++ + + EA+ D ++T V++ + + ++ + V
Sbjct: 61 WGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPK 120
Query: 142 -GGNGSF 147
GG GS
Sbjct: 121 PGGPGSI 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,719,591
Number of Sequences: 62578
Number of extensions: 269929
Number of successful extensions: 659
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 35
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)