Query 038208
Match_columns 228
No_of_seqs 191 out of 1614
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 2.8E-35 6.2E-40 241.7 12.4 167 53-223 3-190 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 1.6E-33 3.5E-38 235.1 15.5 219 2-225 15-270 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 8.6E-33 1.9E-37 234.5 19.0 203 5-225 2-249 (306)
4 PF12847 Methyltransf_18: Meth 99.7 4.3E-16 9.3E-21 112.6 8.3 92 134-225 2-106 (112)
5 PRK15451 tRNA cmo(5)U34 methyl 99.6 2.6E-15 5.6E-20 123.8 11.5 94 132-225 55-159 (247)
6 COG2226 UbiE Methylase involve 99.6 2.9E-15 6.2E-20 121.5 10.3 91 133-225 51-151 (238)
7 PRK06922 hypothetical protein; 99.6 2.7E-15 6E-20 135.8 11.2 132 91-225 377-532 (677)
8 PRK14103 trans-aconitate 2-met 99.6 3.2E-15 6.9E-20 123.8 10.4 100 120-225 19-121 (255)
9 TIGR00740 methyltransferase, p 99.6 3.2E-15 6.9E-20 122.6 10.2 94 132-225 52-156 (239)
10 PF13649 Methyltransf_25: Meth 99.6 2.3E-15 5.1E-20 107.1 5.9 88 137-224 1-101 (101)
11 PF08242 Methyltransf_12: Meth 99.6 5.6E-16 1.2E-20 109.8 1.9 86 138-225 1-98 (99)
12 PF01209 Ubie_methyltran: ubiE 99.6 3.5E-15 7.5E-20 121.7 6.8 93 131-225 45-148 (233)
13 PRK01683 trans-aconitate 2-met 99.6 3.2E-14 7E-19 117.9 11.6 102 119-225 20-125 (258)
14 COG4106 Tam Trans-aconitate me 99.6 1.1E-14 2.3E-19 114.4 8.1 102 119-225 19-124 (257)
15 PF08241 Methyltransf_11: Meth 99.6 1E-14 2.3E-19 101.6 7.0 85 138-225 1-92 (95)
16 PTZ00098 phosphoethanolamine N 99.5 3.2E-14 6.8E-19 118.3 10.4 102 120-225 42-151 (263)
17 PRK11207 tellurite resistance 99.5 2.6E-14 5.5E-19 114.0 9.1 101 120-225 20-129 (197)
18 PLN02233 ubiquinone biosynthes 99.5 6.1E-14 1.3E-18 116.5 11.5 93 131-225 71-177 (261)
19 PF13847 Methyltransf_31: Meth 99.5 2.1E-14 4.5E-19 109.7 7.7 91 133-225 3-105 (152)
20 smart00138 MeTrc Methyltransfe 99.5 1.5E-13 3.3E-18 114.2 11.5 93 133-225 99-237 (264)
21 PLN02244 tocopherol O-methyltr 99.5 2E-13 4.2E-18 117.6 10.1 91 132-225 117-218 (340)
22 KOG1540 Ubiquinone biosynthesi 99.5 3.9E-13 8.4E-18 108.1 10.2 90 133-224 100-208 (296)
23 TIGR02752 MenG_heptapren 2-hep 99.5 3.2E-13 6.9E-18 110.0 9.7 93 131-225 43-146 (231)
24 TIGR00477 tehB tellurite resis 99.5 3.3E-13 7.1E-18 107.4 9.2 101 120-225 20-128 (195)
25 TIGR03587 Pse_Me-ase pseudamin 99.5 3.2E-13 6.9E-18 108.2 9.1 91 131-221 41-135 (204)
26 smart00828 PKS_MT Methyltransf 99.5 2.6E-13 5.7E-18 110.0 8.6 89 135-225 1-99 (224)
27 PRK11036 putative S-adenosyl-L 99.5 2.8E-13 6E-18 112.2 8.9 90 132-225 43-144 (255)
28 PLN03075 nicotianamine synthas 99.4 5E-13 1.1E-17 111.6 9.0 92 133-225 123-228 (296)
29 PLN02490 MPBQ/MSBQ methyltrans 99.4 6.4E-13 1.4E-17 113.6 8.5 91 133-225 113-210 (340)
30 PRK10258 biotin biosynthesis p 99.4 1.9E-12 4.1E-17 106.9 11.0 116 103-225 9-135 (251)
31 TIGR02021 BchM-ChlM magnesium 99.4 2.2E-12 4.7E-17 104.4 11.0 129 93-224 16-152 (219)
32 PLN02336 phosphoethanolamine N 99.4 1.4E-12 3E-17 117.2 10.3 92 131-225 264-364 (475)
33 TIGR02072 BioC biotin biosynth 99.4 1.7E-12 3.7E-17 105.7 9.9 91 133-225 34-130 (240)
34 PRK08317 hypothetical protein; 99.4 2.3E-12 5E-17 104.8 10.2 93 131-225 17-119 (241)
35 PRK05785 hypothetical protein; 99.4 4.2E-12 9.1E-17 103.3 10.9 87 132-223 50-140 (226)
36 PF05401 NodS: Nodulation prot 99.4 9E-13 1.9E-17 103.0 6.6 93 131-225 41-141 (201)
37 PRK12335 tellurite resistance 99.4 2.4E-12 5.2E-17 108.4 9.5 92 132-225 119-218 (287)
38 PRK15001 SAM-dependent 23S rib 99.4 3E-12 6.5E-17 110.9 10.3 92 134-225 229-335 (378)
39 PLN02396 hexaprenyldihydroxybe 99.4 1.1E-12 2.5E-17 111.6 7.5 89 133-225 131-230 (322)
40 PRK15068 tRNA mo(5)U34 methylt 99.4 1.9E-12 4.1E-17 110.5 8.8 90 133-225 122-221 (322)
41 PRK06202 hypothetical protein; 99.4 5.7E-12 1.2E-16 102.9 10.1 90 132-221 59-159 (232)
42 PRK08287 cobalt-precorrin-6Y C 99.4 3.7E-12 8.1E-17 100.6 8.7 90 131-225 29-126 (187)
43 TIGR03438 probable methyltrans 99.3 3.3E-12 7.2E-17 108.2 8.4 94 132-225 62-172 (301)
44 PF05175 MTS: Methyltransferas 99.3 5.7E-12 1.2E-16 98.1 9.0 93 133-225 31-135 (170)
45 PRK11873 arsM arsenite S-adeno 99.3 5.1E-12 1.1E-16 105.5 9.1 93 131-225 75-178 (272)
46 TIGR03840 TMPT_Se_Te thiopurin 99.3 1E-11 2.2E-16 100.1 10.1 92 132-225 33-147 (213)
47 TIGR00452 methyltransferase, p 99.3 5.7E-12 1.2E-16 106.9 8.9 91 132-225 120-220 (314)
48 PLN02336 phosphoethanolamine N 99.3 9.3E-12 2E-16 111.8 10.3 101 120-225 27-137 (475)
49 PRK00216 ubiE ubiquinone/menaq 99.3 2.2E-11 4.8E-16 99.2 11.5 92 132-225 50-153 (239)
50 PRK09489 rsmC 16S ribosomal RN 99.3 1.8E-11 3.8E-16 105.3 10.3 92 134-225 197-298 (342)
51 TIGR00138 gidB 16S rRNA methyl 99.3 6.5E-12 1.4E-16 98.8 6.5 87 133-225 42-137 (181)
52 TIGR02469 CbiT precorrin-6Y C5 99.3 3.8E-11 8.2E-16 87.9 10.1 90 131-225 17-117 (124)
53 PRK07580 Mg-protoporphyrin IX 99.3 2.2E-11 4.8E-16 99.0 9.7 90 132-223 62-159 (230)
54 PF03848 TehB: Tellurite resis 99.3 1.3E-11 2.8E-16 97.2 8.0 101 120-225 20-128 (192)
55 PF13489 Methyltransf_23: Meth 99.3 1.5E-11 3.2E-16 94.1 8.1 87 131-225 20-110 (161)
56 PF02353 CMAS: Mycolic acid cy 99.3 1.1E-11 2.4E-16 103.3 7.6 102 120-225 52-161 (273)
57 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.7E-11 5.8E-16 97.7 9.6 92 132-225 38-138 (223)
58 PRK00107 gidB 16S rRNA methylt 99.3 1.8E-11 3.9E-16 96.6 7.8 88 132-225 44-140 (187)
59 COG2227 UbiG 2-polyprenyl-3-me 99.2 7.4E-12 1.6E-16 100.5 5.1 89 133-225 59-156 (243)
60 PRK00121 trmB tRNA (guanine-N( 99.2 1.3E-11 2.8E-16 98.8 6.4 93 133-225 40-151 (202)
61 PRK11705 cyclopropane fatty ac 99.2 5E-11 1.1E-15 104.1 9.9 94 131-225 165-262 (383)
62 TIGR00091 tRNA (guanine-N(7)-) 99.2 2E-11 4.4E-16 97.0 6.7 92 133-225 16-127 (194)
63 COG2230 Cfa Cyclopropane fatty 99.2 4E-11 8.7E-16 99.3 8.6 102 120-225 62-171 (283)
64 PRK13255 thiopurine S-methyltr 99.2 1.1E-10 2.5E-15 94.3 10.1 92 132-225 36-150 (218)
65 TIGR00537 hemK_rel_arch HemK-r 99.2 7.3E-11 1.6E-15 92.6 8.7 92 132-225 18-135 (179)
66 KOG1270 Methyltransferases [Co 99.2 1.6E-11 3.5E-16 99.4 5.0 88 134-225 90-190 (282)
67 COG2813 RsmC 16S RNA G1207 met 99.2 1.5E-10 3.3E-15 96.2 9.8 102 121-225 149-261 (300)
68 TIGR03533 L3_gln_methyl protei 99.2 1.4E-10 3.1E-15 97.5 9.0 93 133-225 121-246 (284)
69 TIGR03534 RF_mod_PrmC protein- 99.1 2.8E-10 6.1E-15 93.6 9.5 93 133-225 87-212 (251)
70 PRK11805 N5-glutamine S-adenos 99.1 1.9E-10 4.2E-15 97.6 8.6 91 135-225 135-258 (307)
71 PRK04266 fibrillarin; Provisio 99.1 5.3E-10 1.1E-14 90.8 10.5 90 131-225 70-171 (226)
72 PRK04457 spermidine synthase; 99.1 1.2E-10 2.6E-15 96.7 6.7 93 132-225 65-172 (262)
73 PRK13944 protein-L-isoaspartat 99.1 3.7E-10 8E-15 90.6 8.9 87 131-225 70-168 (205)
74 PRK14121 tRNA (guanine-N(7)-)- 99.1 4.5E-10 9.8E-15 97.3 9.4 92 133-225 122-230 (390)
75 PRK11088 rrmA 23S rRNA methylt 99.1 2E-10 4.3E-15 96.0 6.8 84 133-225 85-176 (272)
76 TIGR00536 hemK_fam HemK family 99.1 4.5E-10 9.7E-15 94.5 8.5 91 135-225 116-239 (284)
77 PRK11188 rrmJ 23S rRNA methylt 99.1 9.2E-10 2E-14 88.5 9.9 91 131-225 49-160 (209)
78 PF13659 Methyltransf_26: Meth 99.1 2.1E-10 4.5E-15 83.3 5.6 90 135-225 2-110 (117)
79 PRK13942 protein-L-isoaspartat 99.1 8.2E-10 1.8E-14 89.0 9.4 87 131-225 74-171 (212)
80 PLN02585 magnesium protoporphy 99.1 4.2E-10 9.2E-15 95.6 7.5 89 133-224 144-244 (315)
81 TIGR02081 metW methionine bios 99.0 7.8E-10 1.7E-14 87.8 7.9 88 132-223 12-105 (194)
82 TIGR00080 pimt protein-L-isoas 99.0 1.3E-09 2.8E-14 88.0 9.3 87 131-225 75-172 (215)
83 PRK07402 precorrin-6B methylas 99.0 9E-10 2E-14 87.6 7.9 89 131-225 38-137 (196)
84 PRK09328 N5-glutamine S-adenos 99.0 1.8E-09 3.8E-14 90.2 10.0 94 132-225 107-233 (275)
85 KOG2899 Predicted methyltransf 99.0 7.9E-10 1.7E-14 88.6 7.2 106 119-225 45-204 (288)
86 cd02440 AdoMet_MTases S-adenos 99.0 1.5E-09 3.2E-14 75.7 7.5 88 136-225 1-99 (107)
87 COG4123 Predicted O-methyltran 99.0 1.1E-09 2.5E-14 89.1 6.9 94 131-224 42-164 (248)
88 KOG2361 Predicted methyltransf 99.0 1E-09 2.2E-14 88.0 6.1 91 135-225 73-178 (264)
89 PRK00811 spermidine synthase; 99.0 1.4E-09 3E-14 91.4 7.3 94 132-225 75-186 (283)
90 PRK14966 unknown domain/N5-glu 99.0 3.3E-09 7.3E-14 92.6 9.7 94 132-225 250-376 (423)
91 COG2242 CobL Precorrin-6B meth 98.9 5.6E-09 1.2E-13 81.1 9.0 88 131-224 32-129 (187)
92 PHA03411 putative methyltransf 98.9 2.4E-09 5.3E-14 88.5 7.3 93 134-226 65-179 (279)
93 TIGR01983 UbiG ubiquinone bios 98.9 3.1E-09 6.8E-14 86.0 7.2 89 133-225 45-144 (224)
94 PRK14968 putative methyltransf 98.9 7.5E-09 1.6E-13 81.3 9.2 92 132-225 22-143 (188)
95 PRK13256 thiopurine S-methyltr 98.9 6.6E-09 1.4E-13 84.1 8.9 92 132-225 42-158 (226)
96 PRK00377 cbiT cobalt-precorrin 98.9 4.7E-09 1E-13 83.7 8.0 90 131-225 38-140 (198)
97 PRK01544 bifunctional N5-gluta 98.9 3.9E-09 8.5E-14 95.4 8.4 92 134-225 139-264 (506)
98 PLN02366 spermidine synthase 98.9 4.1E-09 8.8E-14 89.4 7.9 95 131-225 89-201 (308)
99 PRK05134 bifunctional 3-demeth 98.9 7E-09 1.5E-13 84.6 8.9 89 133-225 48-146 (233)
100 PF01739 CheR: CheR methyltran 98.9 3.4E-09 7.3E-14 84.2 6.4 92 133-224 31-169 (196)
101 PRK14967 putative methyltransf 98.9 7.2E-09 1.6E-13 84.1 8.4 94 131-225 34-154 (223)
102 TIGR03704 PrmC_rel_meth putati 98.9 6.6E-09 1.4E-13 85.9 8.2 92 134-225 87-211 (251)
103 TIGR00406 prmA ribosomal prote 98.9 6.8E-09 1.5E-13 87.5 8.2 88 132-225 158-254 (288)
104 PF07021 MetW: Methionine bios 98.9 4.6E-09 9.9E-14 82.1 6.4 85 131-219 11-101 (193)
105 TIGR00438 rrmJ cell division p 98.9 8.7E-09 1.9E-13 81.4 8.0 91 131-225 30-141 (188)
106 PRK01581 speE spermidine synth 98.9 5E-09 1.1E-13 89.8 6.5 95 131-225 148-263 (374)
107 PTZ00146 fibrillarin; Provisio 98.8 1.8E-08 3.9E-13 84.2 9.4 91 131-225 130-232 (293)
108 PF06080 DUF938: Protein of un 98.8 1.8E-08 3.9E-13 79.8 8.9 100 126-225 17-136 (204)
109 PRK00312 pcm protein-L-isoaspa 98.8 1.6E-08 3.4E-13 81.4 8.9 85 131-225 76-170 (212)
110 PRK00517 prmA ribosomal protei 98.8 1.9E-08 4E-13 83.1 9.1 84 131-225 117-208 (250)
111 TIGR00417 speE spermidine synt 98.8 1.1E-08 2.3E-13 85.5 7.2 94 132-225 71-181 (270)
112 PF08003 Methyltransf_9: Prote 98.8 1.8E-08 3.9E-13 84.0 7.3 89 133-225 115-214 (315)
113 COG1352 CheR Methylase of chem 98.8 9.3E-08 2E-12 79.3 11.4 133 92-225 45-236 (268)
114 PRK03612 spermidine synthase; 98.8 1.7E-08 3.7E-13 91.6 7.6 93 132-225 296-410 (521)
115 PF05724 TPMT: Thiopurine S-me 98.8 1.7E-08 3.7E-13 81.6 6.7 92 132-225 36-150 (218)
116 PRK10611 chemotaxis methyltran 98.7 4.3E-08 9.3E-13 82.2 8.2 92 134-225 116-257 (287)
117 PRK13943 protein-L-isoaspartat 98.7 4.4E-08 9.6E-13 83.5 8.0 87 131-225 78-175 (322)
118 PLN02781 Probable caffeoyl-CoA 98.7 1.8E-07 3.9E-12 76.5 10.8 90 131-225 66-173 (234)
119 COG2890 HemK Methylase of poly 98.7 2.5E-08 5.3E-13 83.6 5.5 90 136-225 113-233 (280)
120 PHA03412 putative methyltransf 98.7 8.3E-08 1.8E-12 77.8 7.6 92 133-224 49-157 (241)
121 TIGR01177 conserved hypothetic 98.7 1.4E-07 3E-12 81.0 9.4 93 131-225 180-289 (329)
122 PRK10901 16S rRNA methyltransf 98.6 1.8E-07 3.8E-12 83.2 9.5 95 131-225 242-367 (427)
123 PRK14902 16S rRNA methyltransf 98.6 1.8E-07 3.8E-12 83.6 9.5 95 131-225 248-374 (444)
124 PF05891 Methyltransf_PK: AdoM 98.6 3.7E-08 8E-13 78.5 4.3 92 133-225 55-156 (218)
125 smart00650 rADc Ribosomal RNA 98.6 1.5E-07 3.2E-12 73.1 7.7 80 131-213 11-98 (169)
126 KOG4300 Predicted methyltransf 98.6 9.1E-08 2E-12 75.2 5.8 91 132-225 75-177 (252)
127 KOG1271 Methyltransferases [Ge 98.6 5E-08 1.1E-12 75.2 4.2 92 134-225 68-176 (227)
128 KOG3010 Methyltransferase [Gen 98.6 1.6E-07 3.5E-12 75.5 7.0 88 132-224 32-130 (261)
129 PRK14904 16S rRNA methyltransf 98.6 2.5E-07 5.5E-12 82.6 9.0 94 132-225 249-372 (445)
130 TIGR00563 rsmB ribosomal RNA s 98.6 2.2E-07 4.8E-12 82.5 8.5 95 131-225 236-363 (426)
131 PLN02672 methionine S-methyltr 98.6 1.7E-07 3.7E-12 90.5 8.1 65 134-198 119-210 (1082)
132 PRK14896 ksgA 16S ribosomal RN 98.6 3.4E-07 7.3E-12 76.0 8.8 74 131-207 27-106 (258)
133 PF01135 PCMT: Protein-L-isoas 98.6 1.4E-07 2.9E-12 75.8 5.9 93 121-224 63-166 (209)
134 PF12147 Methyltransf_20: Puta 98.5 4.3E-07 9.4E-12 75.1 8.7 94 132-225 134-244 (311)
135 PF02390 Methyltransf_4: Putat 98.5 2.6E-07 5.7E-12 73.4 7.2 91 134-225 18-128 (195)
136 COG2264 PrmA Ribosomal protein 98.5 3.6E-07 7.9E-12 76.5 8.0 94 126-225 155-258 (300)
137 PRK00274 ksgA 16S ribosomal RN 98.5 3E-07 6.4E-12 76.9 7.4 72 131-205 40-118 (272)
138 PF06325 PrmA: Ribosomal prote 98.5 2.7E-07 5.8E-12 77.7 7.1 84 132-224 160-253 (295)
139 TIGR00755 ksgA dimethyladenosi 98.5 3.2E-07 6.9E-12 75.9 7.2 89 120-213 19-115 (253)
140 TIGR00446 nop2p NOL1/NOP2/sun 98.5 6.3E-07 1.4E-11 74.7 8.6 95 131-225 69-194 (264)
141 PRK14903 16S rRNA methyltransf 98.5 6.3E-07 1.4E-11 79.7 9.0 95 131-225 235-361 (431)
142 PF03291 Pox_MCEL: mRNA cappin 98.5 3.9E-07 8.5E-12 78.0 7.4 92 133-225 62-181 (331)
143 PRK14901 16S rRNA methyltransf 98.5 6.5E-07 1.4E-11 79.7 8.8 95 131-225 250-379 (434)
144 COG0421 SpeE Spermidine syntha 98.5 3.9E-07 8.4E-12 76.2 6.7 93 132-225 75-185 (282)
145 COG2518 Pcm Protein-L-isoaspar 98.5 1.2E-06 2.6E-11 69.6 9.1 85 131-225 70-164 (209)
146 KOG1541 Predicted protein carb 98.5 2.8E-07 6.1E-12 73.2 5.3 90 133-224 50-154 (270)
147 COG2519 GCD14 tRNA(1-methylade 98.5 1.3E-06 2.7E-11 71.1 9.2 108 108-225 68-190 (256)
148 PLN02823 spermine synthase 98.4 4.4E-07 9.6E-12 77.8 6.0 93 132-225 102-215 (336)
149 PRK00536 speE spermidine synth 98.4 8.5E-07 1.9E-11 73.4 7.4 85 131-225 70-166 (262)
150 PF05185 PRMT5: PRMT5 arginine 98.4 7.2E-07 1.6E-11 79.4 7.3 125 93-225 152-292 (448)
151 PF10294 Methyltransf_16: Puta 98.4 4.9E-07 1.1E-11 70.6 5.4 93 131-225 43-151 (173)
152 PLN02232 ubiquinone biosynthes 98.4 3.2E-07 6.9E-12 70.7 4.2 63 161-225 1-76 (160)
153 COG3963 Phospholipid N-methylt 98.4 2.1E-06 4.5E-11 65.4 8.2 95 131-225 46-151 (194)
154 PTZ00338 dimethyladenosine tra 98.4 1.3E-06 2.8E-11 73.8 7.8 80 131-213 34-122 (294)
155 PF08123 DOT1: Histone methyla 98.4 1E-06 2.2E-11 70.5 6.4 96 122-223 34-151 (205)
156 PF01564 Spermine_synth: Sperm 98.3 5.4E-07 1.2E-11 74.2 4.6 95 131-225 74-186 (246)
157 KOG1975 mRNA cap methyltransfe 98.3 1.2E-06 2.6E-11 73.3 6.1 93 132-225 116-232 (389)
158 PRK04148 hypothetical protein; 98.3 4.4E-06 9.6E-11 62.0 8.4 80 133-220 16-101 (134)
159 COG4976 Predicted methyltransf 98.3 2.7E-07 5.9E-12 73.7 1.9 119 103-225 94-220 (287)
160 PF01596 Methyltransf_3: O-met 98.3 5.3E-07 1.1E-11 72.2 3.5 90 131-225 43-150 (205)
161 PLN02476 O-methyltransferase 98.3 3.4E-06 7.3E-11 70.4 7.8 90 131-225 116-223 (278)
162 KOG1500 Protein arginine N-met 98.3 3.2E-06 7E-11 71.2 7.6 91 134-225 178-277 (517)
163 KOG1331 Predicted methyltransf 98.3 2E-06 4.4E-11 70.9 6.2 91 131-225 43-138 (293)
164 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.3E-06 5.1E-11 68.2 6.2 68 133-201 53-131 (199)
165 COG0220 Predicted S-adenosylme 98.2 2.8E-06 6E-11 69.0 6.6 91 134-225 49-159 (227)
166 PRK13168 rumA 23S rRNA m(5)U19 98.2 1.7E-06 3.8E-11 77.2 5.8 85 132-224 296-394 (443)
167 COG4122 Predicted O-methyltran 98.2 6.6E-06 1.4E-10 66.2 7.7 90 131-225 57-161 (219)
168 COG2263 Predicted RNA methylas 98.2 5.7E-06 1.2E-10 64.4 7.0 71 133-204 45-121 (198)
169 PF04672 Methyltransf_19: S-ad 98.1 1.2E-05 2.7E-10 66.3 7.7 92 133-224 68-184 (267)
170 KOG1499 Protein arginine N-met 98.1 6.8E-06 1.5E-10 69.7 5.6 93 132-225 59-162 (346)
171 PRK11727 23S rRNA mA1618 methy 98.1 1.4E-05 3E-10 68.2 7.5 75 133-207 114-205 (321)
172 PF05219 DREV: DREV methyltran 98.1 1.7E-05 3.6E-10 65.0 7.6 88 133-225 94-183 (265)
173 PF05148 Methyltransf_8: Hypot 98.0 2.8E-05 6E-10 61.8 8.4 117 93-225 30-153 (219)
174 PRK15128 23S rRNA m(5)C1962 me 98.0 9.4E-06 2E-10 71.3 6.4 93 132-225 219-334 (396)
175 PRK11783 rlmL 23S rRNA m(2)G24 98.0 9.8E-06 2.1E-10 76.3 6.7 93 132-225 537-651 (702)
176 PRK03522 rumB 23S rRNA methylu 98.0 1.3E-05 2.7E-10 68.6 6.6 64 133-198 173-247 (315)
177 PF08704 GCD14: tRNA methyltra 98.0 1.3E-05 2.9E-10 65.8 6.5 110 106-225 12-141 (247)
178 PRK00050 16S rRNA m(4)C1402 me 98.0 1.2E-05 2.5E-10 67.8 6.2 76 119-197 8-96 (296)
179 KOG0820 Ribosomal RNA adenine 98.0 1.6E-05 3.5E-10 65.2 6.5 66 131-198 56-130 (315)
180 TIGR03439 methyl_EasF probable 98.0 2E-05 4.4E-10 67.1 7.4 93 132-224 75-191 (319)
181 PLN02589 caffeoyl-CoA O-methyl 98.0 2.1E-05 4.6E-10 64.7 6.4 90 131-225 77-185 (247)
182 TIGR00478 tly hemolysin TlyA f 98.0 2.3E-05 5E-10 63.7 6.5 79 133-222 75-164 (228)
183 PRK01544 bifunctional N5-gluta 97.9 1.7E-05 3.6E-10 72.0 6.2 92 133-225 347-457 (506)
184 PF08100 Dimerisation: Dimeris 97.9 1.1E-05 2.3E-10 49.6 2.9 27 8-34 1-28 (51)
185 TIGR00479 rumA 23S rRNA (uraci 97.9 1.5E-05 3.3E-10 70.9 4.4 65 131-197 290-368 (431)
186 TIGR00095 RNA methyltransferas 97.8 2.2E-05 4.8E-10 62.1 4.2 88 133-224 49-153 (189)
187 COG0030 KsgA Dimethyladenosine 97.8 0.0001 2.2E-09 60.8 8.1 89 120-214 20-117 (259)
188 PF09243 Rsm22: Mitochondrial 97.8 0.00011 2.4E-09 61.6 8.2 90 133-222 33-133 (274)
189 PF03141 Methyltransf_29: Puta 97.8 5.8E-06 1.3E-10 73.2 0.5 88 133-224 117-213 (506)
190 KOG2904 Predicted methyltransf 97.7 6.9E-05 1.5E-09 61.6 5.9 68 131-198 146-229 (328)
191 KOG1661 Protein-L-isoaspartate 97.7 8.9E-05 1.9E-09 58.7 6.2 94 122-224 72-187 (237)
192 KOG2940 Predicted methyltransf 97.7 8.1E-05 1.8E-09 59.8 6.1 90 133-225 72-169 (325)
193 TIGR02085 meth_trns_rumB 23S r 97.7 3.9E-05 8.4E-10 67.1 4.4 64 133-198 233-307 (374)
194 KOG3045 Predicted RNA methylas 97.7 0.00038 8.3E-09 56.9 9.2 115 93-225 138-259 (325)
195 COG4262 Predicted spermidine s 97.6 0.00013 2.7E-09 62.5 6.1 88 132-225 288-402 (508)
196 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00018 3.9E-09 59.8 7.1 91 119-218 19-119 (262)
197 COG0293 FtsJ 23S rRNA methylas 97.6 0.0003 6.6E-09 55.9 7.7 100 120-225 34-154 (205)
198 KOG3191 Predicted N6-DNA-methy 97.5 0.00032 6.9E-09 54.4 6.4 67 134-200 44-119 (209)
199 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00014 3.1E-09 63.6 5.1 86 134-225 58-153 (382)
200 KOG3420 Predicted RNA methylas 97.5 9.6E-05 2.1E-09 55.2 3.2 68 133-202 48-125 (185)
201 PF13679 Methyltransf_32: Meth 97.4 0.00025 5.3E-09 53.4 5.1 77 132-208 24-116 (141)
202 PRK11760 putative 23S rRNA C24 97.4 0.001 2.2E-08 56.9 9.0 67 132-200 210-279 (357)
203 PF09445 Methyltransf_15: RNA 97.4 6.9E-05 1.5E-09 57.6 1.6 62 135-198 1-76 (163)
204 PF11968 DUF3321: Putative met 97.4 0.00024 5.2E-09 56.8 4.6 80 135-225 53-139 (219)
205 TIGR02143 trmA_only tRNA (urac 97.4 0.00016 3.4E-09 62.8 3.4 51 135-187 199-256 (353)
206 KOG4589 Cell division protein 97.3 0.0006 1.3E-08 53.2 6.1 91 131-225 67-179 (232)
207 KOG1709 Guanidinoacetate methy 97.3 0.0013 2.8E-08 52.5 7.9 93 131-225 99-201 (271)
208 PRK11933 yebU rRNA (cytosine-C 97.3 0.0012 2.7E-08 59.3 8.9 94 132-225 112-237 (470)
209 PF02475 Met_10: Met-10+ like- 97.3 0.00019 4.2E-09 57.2 3.1 89 131-225 99-197 (200)
210 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00018 3.9E-09 62.6 3.0 51 135-187 208-265 (362)
211 PF01728 FtsJ: FtsJ-like methy 97.3 0.00014 3.1E-09 56.8 2.2 88 133-224 23-133 (181)
212 TIGR01444 fkbM_fam methyltrans 97.3 0.00062 1.3E-08 50.9 5.5 52 136-187 1-59 (143)
213 KOG3115 Methyltransferase-like 97.3 0.00023 5E-09 56.1 3.0 93 133-225 60-178 (249)
214 COG4076 Predicted RNA methylas 97.2 0.00083 1.8E-08 52.5 5.9 88 135-224 34-129 (252)
215 PF01170 UPF0020: Putative RNA 97.2 0.0012 2.5E-08 51.8 6.7 73 131-203 26-118 (179)
216 COG0500 SmtA SAM-dependent met 97.1 0.0024 5.1E-08 46.8 7.5 85 137-225 52-150 (257)
217 COG2521 Predicted archaeal met 97.1 0.00092 2E-08 54.0 5.1 87 132-224 133-239 (287)
218 COG4301 Uncharacterized conser 97.0 0.0018 4E-08 52.7 6.0 93 132-224 77-187 (321)
219 PF02527 GidB: rRNA small subu 97.0 0.00098 2.1E-08 52.5 4.3 83 136-224 51-142 (184)
220 PF03059 NAS: Nicotianamine sy 97.0 0.0024 5.2E-08 53.3 6.6 90 134-224 121-224 (276)
221 PF07091 FmrO: Ribosomal RNA m 96.9 0.0011 2.4E-08 54.2 3.9 76 132-207 104-187 (251)
222 COG3897 Predicted methyltransf 96.8 0.0039 8.6E-08 49.0 6.1 90 131-224 77-172 (218)
223 PF04816 DUF633: Family of unk 96.7 0.002 4.3E-08 51.6 4.1 77 137-217 1-88 (205)
224 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.0098 2.1E-07 56.3 9.3 90 132-221 189-335 (702)
225 COG0357 GidB Predicted S-adeno 96.7 0.0027 5.8E-08 51.1 4.4 86 134-225 68-163 (215)
226 COG5459 Predicted rRNA methyla 96.6 0.00084 1.8E-08 57.2 0.9 91 134-224 114-219 (484)
227 COG4798 Predicted methyltransf 96.5 0.0066 1.4E-07 47.8 5.7 96 131-226 46-162 (238)
228 TIGR02987 met_A_Alw26 type II 96.5 0.0051 1.1E-07 56.2 6.0 67 133-199 31-120 (524)
229 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.5 0.0015 3.2E-08 54.0 2.0 90 133-224 56-193 (256)
230 KOG1269 SAM-dependent methyltr 96.5 0.0026 5.5E-08 55.3 3.3 90 133-225 110-210 (364)
231 TIGR00006 S-adenosyl-methyltra 96.2 0.013 2.9E-07 49.6 6.4 66 119-187 9-80 (305)
232 PF04072 LCM: Leucine carboxyl 96.2 0.018 3.8E-07 45.2 6.5 86 132-217 77-183 (183)
233 PF13578 Methyltransf_24: Meth 96.2 0.0015 3.2E-08 46.3 0.3 85 138-225 1-100 (106)
234 KOG2187 tRNA uracil-5-methyltr 96.2 0.0083 1.8E-07 53.7 4.9 54 131-186 381-441 (534)
235 TIGR00027 mthyl_TIGR00027 meth 96.0 0.035 7.5E-07 46.2 7.9 92 132-224 80-191 (260)
236 PF01795 Methyltransf_5: MraW 96.0 0.018 3.9E-07 48.9 6.2 66 119-187 9-80 (310)
237 KOG1663 O-methyltransferase [S 96.0 0.029 6.3E-07 45.3 6.9 90 131-225 71-178 (237)
238 PF07757 AdoMet_MTase: Predict 96.0 0.0058 1.2E-07 43.4 2.5 31 133-165 58-88 (112)
239 KOG2915 tRNA(1-methyladenosine 95.8 0.065 1.4E-06 44.4 8.3 90 105-197 76-183 (314)
240 PF03602 Cons_hypoth95: Conser 95.8 0.0042 9.2E-08 48.8 1.3 89 133-224 42-147 (183)
241 PF02384 N6_Mtase: N-6 DNA Met 95.8 0.023 4.9E-07 48.3 5.8 94 132-225 45-178 (311)
242 TIGR00308 TRM1 tRNA(guanine-26 95.7 0.03 6.5E-07 49.0 6.5 85 135-225 46-142 (374)
243 KOG1562 Spermidine synthase [A 95.4 0.015 3.2E-07 48.7 3.2 94 131-225 119-231 (337)
244 COG2384 Predicted SAM-dependen 95.3 0.036 7.9E-07 44.5 5.1 85 132-220 15-110 (226)
245 COG3315 O-Methyltransferase in 95.3 0.035 7.6E-07 47.1 5.2 89 133-223 92-202 (297)
246 KOG3201 Uncharacterized conser 95.1 0.0044 9.5E-08 47.3 -0.5 90 134-225 30-135 (201)
247 PF07942 N2227: N2227-like pro 95.1 0.15 3.2E-06 42.6 8.3 89 133-225 56-197 (270)
248 COG2265 TrmA SAM-dependent met 95.0 0.02 4.3E-07 51.0 3.0 65 131-197 291-368 (432)
249 COG0116 Predicted N6-adenine-s 94.9 0.12 2.6E-06 45.0 7.6 90 131-220 189-330 (381)
250 COG2520 Predicted methyltransf 94.9 0.049 1.1E-06 46.9 5.1 86 132-224 187-283 (341)
251 KOG0822 Protein kinase inhibit 94.9 0.16 3.4E-06 45.9 8.3 123 94-225 335-473 (649)
252 PLN02668 indole-3-acetate carb 94.9 0.2 4.3E-06 44.0 8.8 73 133-205 63-176 (386)
253 PF11312 DUF3115: Protein of u 94.7 0.05 1.1E-06 46.0 4.6 89 135-223 88-235 (315)
254 PF05958 tRNA_U5-meth_tr: tRNA 94.6 0.024 5.1E-07 49.3 2.6 49 135-185 198-253 (352)
255 KOG2730 Methylase [General fun 94.6 0.028 6E-07 45.2 2.6 53 133-187 94-154 (263)
256 COG1092 Predicted SAM-dependen 94.4 0.045 9.9E-07 48.1 3.8 91 133-225 217-331 (393)
257 KOG3987 Uncharacterized conser 94.3 0.014 3E-07 46.5 0.4 87 133-224 112-201 (288)
258 COG1041 Predicted DNA modifica 94.3 0.42 9.1E-06 41.2 9.2 91 132-224 196-304 (347)
259 COG0275 Predicted S-adenosylme 94.3 0.13 2.8E-06 43.4 5.9 65 120-187 13-84 (314)
260 PF04989 CmcI: Cephalosporin h 94.2 0.2 4.2E-06 40.1 6.6 91 132-224 31-141 (206)
261 PF01861 DUF43: Protein of unk 94.2 0.2 4.3E-06 41.0 6.7 88 133-224 44-142 (243)
262 PF01269 Fibrillarin: Fibrilla 93.9 0.26 5.6E-06 39.9 6.8 90 131-224 71-172 (229)
263 KOG1099 SAM-dependent methyltr 93.8 0.088 1.9E-06 42.7 4.0 92 130-225 38-158 (294)
264 KOG2793 Putative N2,N2-dimethy 93.8 0.28 6.1E-06 40.4 6.9 88 133-223 86-192 (248)
265 COG0742 N6-adenine-specific me 93.7 0.19 4.1E-06 39.6 5.6 92 133-225 43-149 (187)
266 COG0144 Sun tRNA and rRNA cyto 93.5 0.52 1.1E-05 41.0 8.5 95 131-225 154-283 (355)
267 PF10672 Methyltrans_SAM: S-ad 93.2 0.094 2E-06 44.2 3.5 93 132-225 122-233 (286)
268 KOG4058 Uncharacterized conser 92.9 0.12 2.5E-06 39.1 3.2 60 133-193 72-140 (199)
269 KOG2798 Putative trehalase [Ca 92.8 0.46 1E-05 40.4 6.9 90 134-225 151-291 (369)
270 COG1189 Predicted rRNA methyla 92.5 0.63 1.4E-05 38.0 7.1 94 123-224 71-172 (245)
271 PRK10742 putative methyltransf 92.4 0.31 6.7E-06 40.1 5.3 74 120-198 76-171 (250)
272 PF05971 Methyltransf_10: Prot 92.0 0.28 6E-06 41.6 4.7 73 134-207 103-193 (299)
273 KOG3924 Putative protein methy 92.0 0.31 6.6E-06 42.6 5.0 90 131-223 190-301 (419)
274 COG4627 Uncharacterized protei 91.4 0.06 1.3E-06 40.9 0.1 48 178-225 31-81 (185)
275 PF12692 Methyltransf_17: S-ad 91.3 0.99 2.1E-05 34.1 6.4 54 134-187 29-82 (160)
276 KOG1501 Arginine N-methyltrans 91.2 0.28 6.1E-06 43.5 4.0 89 133-222 66-166 (636)
277 PF03141 Methyltransf_29: Puta 90.8 0.28 6.2E-06 44.1 3.7 88 132-225 364-462 (506)
278 PF09339 HTH_IclR: IclR helix- 90.4 0.21 4.6E-06 30.5 1.9 32 16-47 6-51 (52)
279 KOG2352 Predicted spermine/spe 90.2 0.99 2.1E-05 40.5 6.6 89 136-225 51-156 (482)
280 COG1255 Uncharacterized protei 89.2 4.5 9.8E-05 29.2 8.1 80 131-220 11-94 (129)
281 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.9 1.3 2.7E-05 37.4 6.1 95 131-225 83-214 (283)
282 smart00346 HTH_ICLR helix_turn 87.6 1 2.2E-05 30.6 3.9 44 15-61 7-64 (91)
283 PF06859 Bin3: Bicoid-interact 87.4 0.17 3.8E-06 36.1 0.0 34 192-225 2-39 (110)
284 PF03492 Methyltransf_7: SAM d 86.7 0.77 1.7E-05 39.6 3.6 75 131-205 14-121 (334)
285 COG1889 NOP1 Fibrillarin-like 86.6 2.3 4.9E-05 34.1 5.7 89 131-224 74-174 (231)
286 PF14338 Mrr_N: Mrr N-terminal 86.5 1.4 2.9E-05 30.4 4.1 32 34-69 60-91 (92)
287 PF03686 UPF0146: Uncharacteri 86.4 4.4 9.6E-05 29.8 6.9 63 132-200 12-79 (127)
288 PF02153 PDH: Prephenate dehyd 86.2 0.55 1.2E-05 38.9 2.4 72 147-224 1-73 (258)
289 PF05206 TRM13: Methyltransfer 86.1 1.3 2.9E-05 36.7 4.5 35 131-165 16-55 (259)
290 PF11899 DUF3419: Protein of u 86.0 1.1 2.4E-05 39.3 4.3 51 175-225 274-329 (380)
291 PF02636 Methyltransf_28: Puta 86.0 1.8 3.9E-05 35.6 5.3 32 134-165 19-58 (252)
292 PF10354 DUF2431: Domain of un 85.9 3 6.6E-05 32.1 6.2 87 139-225 2-120 (166)
293 PRK11569 transcriptional repre 84.7 1.5 3.3E-05 36.6 4.3 45 15-62 30-88 (274)
294 COG1565 Uncharacterized conser 84.4 2.2 4.7E-05 37.1 5.1 62 100-169 51-122 (370)
295 COG1414 IclR Transcriptional r 84.3 1.4 3.1E-05 36.2 3.9 44 16-62 7-64 (246)
296 KOG2918 Carboxymethyl transfer 84.0 3.8 8.2E-05 34.9 6.3 93 131-223 85-220 (335)
297 TIGR02431 pcaR_pcaU beta-ketoa 83.9 1.5 3.2E-05 36.0 3.9 44 15-63 11-68 (248)
298 PRK10163 DNA-binding transcrip 83.3 1.8 3.9E-05 36.1 4.2 45 15-62 27-85 (271)
299 cd08283 FDH_like_1 Glutathione 82.7 8.8 0.00019 33.5 8.5 92 131-224 182-300 (386)
300 PRK09834 DNA-binding transcrip 81.2 2.3 5.1E-05 35.2 4.1 49 14-65 12-74 (263)
301 PTZ00357 methyltransferase; Pr 80.3 8 0.00017 36.7 7.4 130 91-222 639-823 (1072)
302 PRK07502 cyclohexadienyl dehyd 80.2 5.3 0.00011 33.8 6.0 86 134-224 6-94 (307)
303 COG1064 AdhP Zn-dependent alco 78.5 4.4 9.4E-05 35.1 4.9 84 131-224 164-253 (339)
304 PRK07417 arogenate dehydrogena 78.3 6.5 0.00014 32.8 5.9 80 136-223 2-84 (279)
305 PRK15090 DNA-binding transcrip 78.3 3 6.5E-05 34.4 3.9 44 15-62 16-73 (257)
306 PF01555 N6_N4_Mtase: DNA meth 78.1 3 6.6E-05 33.0 3.8 39 132-172 190-229 (231)
307 PF13463 HTH_27: Winged helix 74.0 5.4 0.00012 25.2 3.5 47 15-61 5-67 (68)
308 PRK09424 pntA NAD(P) transhydr 73.6 14 0.00031 33.8 7.2 88 133-225 164-280 (509)
309 PF05711 TylF: Macrocin-O-meth 73.2 4.8 0.0001 33.2 3.7 91 134-225 75-207 (248)
310 KOG2651 rRNA adenine N-6-methy 73.0 7.5 0.00016 34.2 4.9 35 131-166 151-185 (476)
311 KOG1098 Putative SAM-dependent 72.7 4.1 8.8E-05 37.9 3.4 91 131-225 42-153 (780)
312 PF06962 rRNA_methylase: Putat 72.7 4.9 0.00011 30.1 3.4 65 159-225 1-87 (140)
313 PF02254 TrkA_N: TrkA-N domain 72.6 3.4 7.4E-05 29.2 2.5 71 142-217 4-84 (116)
314 cd00315 Cyt_C5_DNA_methylase C 72.0 5.4 0.00012 33.3 3.9 68 136-205 2-76 (275)
315 COG1063 Tdh Threonine dehydrog 71.8 9 0.0002 33.2 5.3 83 135-225 170-264 (350)
316 KOG2666 UDP-glucose/GDP-mannos 70.4 5.1 0.00011 34.3 3.3 63 136-198 3-85 (481)
317 PF04445 SAM_MT: Putative SAM- 70.3 5.5 0.00012 32.6 3.4 78 120-202 63-162 (234)
318 cd07153 Fur_like Ferric uptake 69.3 9.5 0.00021 27.0 4.2 33 16-48 4-55 (116)
319 KOG2920 Predicted methyltransf 68.4 4.6 0.0001 33.8 2.6 36 133-169 116-152 (282)
320 COG0287 TyrA Prephenate dehydr 68.2 9.7 0.00021 32.0 4.6 84 135-223 4-91 (279)
321 PF14947 HTH_45: Winged helix- 67.6 9.5 0.00021 25.2 3.6 27 34-65 39-65 (77)
322 PF13460 NAD_binding_10: NADH( 67.6 41 0.00088 25.5 7.8 79 140-225 3-90 (183)
323 PF02981 FokI_N: Restriction e 67.1 6.6 0.00014 29.4 2.9 31 34-67 112-142 (145)
324 COG4742 Predicted transcriptio 66.8 14 0.0003 30.8 5.1 53 9-68 9-75 (260)
325 KOG1596 Fibrillarin and relate 66.4 22 0.00047 29.5 6.0 89 131-224 154-255 (317)
326 PF14394 DUF4423: Domain of un 65.9 12 0.00026 29.0 4.3 58 2-63 21-86 (171)
327 PRK05562 precorrin-2 dehydroge 65.7 30 0.00065 28.1 6.8 66 133-199 24-93 (223)
328 PRK06719 precorrin-2 dehydroge 65.7 19 0.00041 27.4 5.4 63 133-198 12-77 (157)
329 PRK08507 prephenate dehydrogen 64.5 15 0.00033 30.5 5.1 80 136-223 2-84 (275)
330 TIGR01470 cysG_Nterm siroheme 64.2 20 0.00044 28.5 5.5 63 133-198 8-76 (205)
331 PF03514 GRAS: GRAS domain fam 64.1 14 0.0003 32.4 4.9 101 119-223 99-237 (374)
332 smart00550 Zalpha Z-DNA-bindin 63.8 16 0.00034 23.5 4.0 46 13-60 6-66 (68)
333 PRK11524 putative methyltransf 63.6 15 0.00032 30.9 4.8 40 132-173 207-247 (284)
334 COG2933 Predicted SAM-dependen 62.6 18 0.00038 30.4 4.9 55 131-187 209-263 (358)
335 PRK09273 hypothetical protein; 61.7 7.5 0.00016 31.2 2.6 51 132-182 61-111 (211)
336 COG0686 Ald Alanine dehydrogen 60.0 23 0.00051 30.4 5.3 89 134-225 168-263 (371)
337 COG1568 Predicted methyltransf 59.5 31 0.00066 29.2 5.8 173 34-223 54-250 (354)
338 PF08461 HTH_12: Ribonuclease 59.4 19 0.00041 23.1 3.8 42 18-63 3-63 (66)
339 COG3682 Predicted transcriptio 58.2 13 0.00028 27.2 3.1 45 13-61 6-68 (123)
340 TIGR00561 pntA NAD(P) transhyd 57.9 22 0.00047 32.7 5.2 89 133-225 163-279 (511)
341 TIGR01120 rpiB ribose 5-phosph 57.8 11 0.00024 28.3 2.8 46 136-181 58-103 (143)
342 COG5379 BtaA S-adenosylmethion 57.4 9.1 0.0002 32.5 2.4 49 175-223 306-359 (414)
343 PF01358 PARP_regulatory: Poly 56.1 17 0.00037 30.7 3.8 68 133-200 58-136 (294)
344 PRK05571 ribose-5-phosphate is 56.0 12 0.00027 28.2 2.8 47 140-186 64-112 (148)
345 TIGR00689 rpiB_lacA_lacB sugar 55.7 13 0.00027 28.1 2.8 48 138-185 59-108 (144)
346 TIGR00675 dcm DNA-methyltransf 55.4 22 0.00048 30.3 4.6 66 137-205 1-73 (315)
347 COG1179 Dinucleotide-utilizing 55.3 35 0.00077 28.2 5.4 35 134-168 30-65 (263)
348 COG0735 Fur Fe2+/Zn2+ uptake r 55.3 21 0.00045 26.8 3.9 35 14-48 22-75 (145)
349 PF12840 HTH_20: Helix-turn-he 55.2 14 0.0003 23.0 2.6 41 7-48 4-58 (61)
350 PRK10857 DNA-binding transcrip 55.1 31 0.00067 26.5 5.0 49 7-61 8-70 (164)
351 cd01842 SGNH_hydrolase_like_5 54.9 14 0.00031 28.9 3.0 32 192-223 51-92 (183)
352 PRK01747 mnmC bifunctional tRN 54.0 13 0.00028 35.2 3.2 88 134-225 58-201 (662)
353 PF08672 APC2: Anaphase promot 53.9 20 0.00044 22.6 3.1 27 27-58 31-60 (60)
354 PF01638 HxlR: HxlR-like helix 53.7 17 0.00038 24.6 3.1 33 34-66 39-73 (90)
355 PF07279 DUF1442: Protein of u 53.4 1.2E+02 0.0026 24.5 8.4 80 133-217 41-137 (218)
356 TIGR02147 Fsuc_second hypothet 53.3 22 0.00048 29.8 4.1 56 3-62 120-183 (271)
357 PF02502 LacAB_rpiB: Ribose/Ga 52.5 9.8 0.00021 28.5 1.7 50 136-185 58-109 (140)
358 PRK13699 putative methylase; P 52.3 37 0.0008 27.5 5.2 40 132-173 162-202 (227)
359 PHA01634 hypothetical protein 51.9 22 0.00048 26.4 3.4 39 133-172 28-67 (156)
360 smart00347 HTH_MARR helix_turn 51.2 29 0.00062 23.3 3.9 51 15-66 12-78 (101)
361 TIGR03329 Phn_aa_oxid putative 51.0 18 0.00039 32.4 3.6 32 135-166 25-58 (460)
362 COG3432 Predicted transcriptio 50.7 23 0.00049 24.7 3.2 32 34-66 51-82 (95)
363 PF01978 TrmB: Sugar-specific 50.5 8.6 0.00019 24.5 1.0 34 14-48 9-56 (68)
364 PRK06718 precorrin-2 dehydroge 49.7 39 0.00084 26.8 4.9 63 133-198 9-77 (202)
365 PTZ00325 malate dehydrogenase; 49.4 79 0.0017 27.2 7.0 95 133-227 7-119 (321)
366 PF03486 HI0933_like: HI0933-l 49.3 7.2 0.00016 34.7 0.7 80 136-216 2-89 (409)
367 PF07381 DUF1495: Winged helix 49.1 29 0.00064 23.9 3.5 54 12-65 8-86 (90)
368 PRK10669 putative cation:proto 48.8 29 0.00063 32.1 4.6 46 142-188 423-471 (558)
369 PF05050 Methyltransf_21: Meth 47.6 31 0.00067 25.5 3.9 31 139-169 1-36 (167)
370 PF07101 DUF1363: Protein of u 47.5 8.3 0.00018 26.7 0.6 23 137-159 6-29 (124)
371 PRK03659 glutathione-regulated 47.1 30 0.00065 32.4 4.4 76 136-218 402-487 (601)
372 PRK06545 prephenate dehydrogen 46.9 58 0.0013 28.3 6.0 83 136-223 2-88 (359)
373 PF02082 Rrf2: Transcriptional 46.5 60 0.0013 21.5 4.8 27 34-62 45-71 (83)
374 CHL00194 ycf39 Ycf39; Provisio 46.5 93 0.002 26.1 7.1 57 140-197 5-70 (317)
375 COG0286 HsdM Type I restrictio 46.5 49 0.0011 30.2 5.6 92 133-224 186-320 (489)
376 COG0698 RpiB Ribose 5-phosphat 46.4 22 0.00048 27.0 2.8 49 134-182 58-106 (151)
377 COG1321 TroR Mn-dependent tran 46.1 26 0.00057 26.6 3.3 37 27-67 37-73 (154)
378 PRK12615 galactose-6-phosphate 46.0 22 0.00049 27.6 2.9 45 137-181 60-104 (171)
379 PF01210 NAD_Gly3P_dh_N: NAD-d 45.5 19 0.00041 27.2 2.4 82 136-223 1-96 (157)
380 COG3355 Predicted transcriptio 45.2 40 0.00086 24.8 3.9 33 15-48 29-76 (126)
381 TIGR01119 lacB galactose-6-pho 45.2 23 0.00049 27.5 2.8 45 138-182 61-105 (171)
382 PF01475 FUR: Ferric uptake re 45.1 24 0.00051 25.2 2.8 46 14-59 9-73 (120)
383 KOG2782 Putative SAM dependent 45.0 20 0.00044 29.2 2.5 35 132-166 42-76 (303)
384 PTZ00215 ribose 5-phosphate is 44.2 24 0.00053 26.8 2.8 48 138-185 65-114 (151)
385 TIGR02337 HpaR homoprotocatech 44.0 50 0.0011 23.4 4.3 52 15-67 30-97 (118)
386 PRK03562 glutathione-regulated 43.9 31 0.00066 32.5 4.0 77 135-218 401-487 (621)
387 PF02056 Glyco_hydro_4: Family 43.8 14 0.00031 29.0 1.5 64 136-199 1-81 (183)
388 COG1088 RfbB dTDP-D-glucose 4, 43.5 60 0.0013 27.8 5.2 48 140-187 5-62 (340)
389 PRK09496 trkA potassium transp 43.4 33 0.00071 30.5 4.0 62 134-197 231-303 (453)
390 PRK03902 manganese transport t 43.3 49 0.0011 24.4 4.3 29 34-66 42-70 (142)
391 PF06016 Reovirus_L2: Reovirus 43.2 53 0.0011 33.4 5.5 91 133-225 822-920 (1289)
392 cd05298 GH4_GlvA_pagL_like Gly 43.0 34 0.00073 30.8 3.9 63 136-199 2-82 (437)
393 PRK08293 3-hydroxybutyryl-CoA 43.0 83 0.0018 26.2 6.2 85 135-223 4-113 (287)
394 PRK08622 galactose-6-phosphate 42.9 25 0.00054 27.3 2.7 45 138-182 61-105 (171)
395 cd05197 GH4_glycoside_hydrolas 42.7 36 0.00079 30.5 4.1 63 136-199 2-82 (425)
396 PF11599 AviRa: RRNA methyltra 42.4 27 0.00058 28.4 2.8 93 132-224 50-208 (246)
397 KOG2078 tRNA modification enzy 42.3 9.7 0.00021 34.0 0.4 53 131-185 247-308 (495)
398 TIGR02010 IscR iron-sulfur clu 41.9 61 0.0013 23.7 4.7 33 27-61 24-70 (135)
399 PF13412 HTH_24: Winged helix- 41.8 41 0.00088 19.6 3.0 31 14-45 4-48 (48)
400 TIGR02261 benz_CoA_red_D benzo 41.5 20 0.00044 29.8 2.1 25 131-155 95-144 (262)
401 COG3510 CmcI Cephalosporin hyd 41.3 64 0.0014 25.8 4.7 90 132-223 68-173 (237)
402 cd00092 HTH_CRP helix_turn_hel 41.1 85 0.0018 19.2 5.1 23 34-60 45-67 (67)
403 PF01073 3Beta_HSD: 3-beta hyd 40.9 69 0.0015 26.7 5.4 64 142-205 4-81 (280)
404 cd05297 GH4_alpha_glucosidase_ 39.8 13 0.00028 33.2 0.8 65 136-200 2-83 (423)
405 PRK10141 DNA-binding transcrip 39.7 47 0.001 24.0 3.6 50 6-60 9-75 (117)
406 COG4190 Predicted transcriptio 39.7 54 0.0012 24.3 3.8 46 2-48 53-112 (144)
407 PF13405 EF-hand_6: EF-hand do 39.5 29 0.00064 18.1 1.9 25 18-42 5-31 (31)
408 PF12242 Eno-Rase_NADH_b: NAD( 39.5 33 0.00072 22.9 2.5 33 131-163 36-70 (78)
409 TIGR01118 lacA galactose-6-pho 38.9 25 0.00054 26.4 2.1 44 142-185 63-108 (141)
410 smart00419 HTH_CRP helix_turn_ 38.7 54 0.0012 18.6 3.3 25 29-58 23-47 (48)
411 PF01022 HTH_5: Bacterial regu 37.6 42 0.00092 19.5 2.6 30 15-46 4-47 (47)
412 PF12802 MarR_2: MarR family; 37.5 40 0.00088 20.5 2.7 34 15-48 7-55 (62)
413 COG0451 WcaG Nucleoside-diphos 37.3 94 0.002 25.6 5.7 84 137-223 3-106 (314)
414 COG5631 Predicted transcriptio 37.2 69 0.0015 24.7 4.2 61 2-63 65-147 (199)
415 smart00529 HTH_DTXR Helix-turn 36.8 50 0.0011 22.3 3.3 36 27-66 12-47 (96)
416 PF07992 Pyr_redox_2: Pyridine 36.5 42 0.00091 25.7 3.2 30 136-165 1-30 (201)
417 PF07801 DUF1647: Protein of u 36.5 90 0.002 23.5 4.7 42 149-191 81-126 (142)
418 KOG3851 Sulfide:quinone oxidor 36.4 53 0.0011 28.5 3.8 34 132-165 37-72 (446)
419 PRK12613 galactose-6-phosphate 36.3 29 0.00063 26.0 2.1 40 142-181 62-101 (141)
420 COG4567 Response regulator con 36.2 48 0.001 25.4 3.2 37 2-41 88-124 (182)
421 PRK11639 zinc uptake transcrip 36.0 62 0.0014 24.9 4.0 35 14-48 27-80 (169)
422 PF05059 Orbi_VP4: Orbivirus V 35.8 64 0.0014 30.0 4.5 44 120-164 178-225 (644)
423 PRK05225 ketol-acid reductoiso 35.4 25 0.00055 31.8 1.9 84 133-224 35-125 (487)
424 PF09012 FeoC: FeoC like trans 35.4 39 0.00085 21.6 2.4 30 18-48 5-48 (69)
425 KOG2352 Predicted spermine/spe 35.2 19 0.00041 32.6 1.1 120 100-225 267-411 (482)
426 PRK09462 fur ferric uptake reg 35.1 74 0.0016 23.7 4.2 35 14-48 18-72 (148)
427 KOG0821 Predicted ribosomal RN 35.0 36 0.00077 27.8 2.5 53 133-187 50-109 (326)
428 PF14314 Methyltrans_Mon: Viru 34.7 81 0.0018 30.0 5.1 41 118-162 311-351 (675)
429 TIGR02259 benz_CoA_red_A benzo 34.6 30 0.00066 30.7 2.2 25 131-155 265-314 (432)
430 PRK07680 late competence prote 34.5 82 0.0018 26.0 4.8 81 137-223 3-89 (273)
431 PRK10637 cysG siroheme synthas 34.5 67 0.0015 29.0 4.5 65 133-198 11-79 (457)
432 PRK04176 ribulose-1,5-biphosph 34.4 77 0.0017 26.1 4.6 31 135-165 26-56 (257)
433 PRK15076 alpha-galactosidase; 34.4 45 0.00098 29.9 3.4 64 136-199 3-83 (431)
434 COG1748 LYS9 Saccharopine dehy 34.2 96 0.0021 27.5 5.3 64 135-198 2-75 (389)
435 PRK04663 murD UDP-N-acetylmura 33.9 1.8E+02 0.0038 25.9 7.1 68 133-202 6-79 (438)
436 PRK13512 coenzyme A disulfide 33.9 53 0.0012 29.3 3.8 31 135-165 2-34 (438)
437 PF03807 F420_oxidored: NADP o 33.9 22 0.00048 24.0 1.1 75 143-223 6-87 (96)
438 PRK06223 malate dehydrogenase; 33.7 1.5E+02 0.0031 25.0 6.3 64 135-199 3-78 (307)
439 PRK06847 hypothetical protein; 33.7 57 0.0012 28.0 3.9 33 133-165 3-35 (375)
440 PRK11050 manganese transport r 33.2 86 0.0019 23.6 4.3 29 34-66 71-99 (152)
441 KOG2198 tRNA cytosine-5-methyl 32.9 78 0.0017 27.8 4.4 35 131-165 153-191 (375)
442 COG1867 TRM1 N2,N2-dimethylgua 32.8 66 0.0014 28.3 3.9 87 134-226 53-150 (380)
443 PRK08621 galactose-6-phosphate 32.8 32 0.0007 25.8 1.8 40 142-181 63-102 (142)
444 PRK06153 hypothetical protein; 32.7 64 0.0014 28.6 3.9 32 134-165 176-208 (393)
445 PRK11908 NAD-dependent epimera 32.5 1E+02 0.0022 26.3 5.2 60 136-196 3-73 (347)
446 PRK06475 salicylate hydroxylas 32.3 53 0.0012 28.7 3.5 31 135-165 3-33 (400)
447 PF06406 StbA: StbA protein; 32.0 96 0.0021 26.4 4.9 39 131-169 270-310 (318)
448 PTZ00117 malate dehydrogenase; 31.9 97 0.0021 26.5 4.9 66 133-199 4-81 (319)
449 PRK07574 formate dehydrogenase 31.6 1.1E+02 0.0023 27.2 5.1 83 134-223 192-277 (385)
450 PLN02427 UDP-apiose/xylose syn 31.4 1.1E+02 0.0024 26.5 5.3 61 135-196 15-91 (386)
451 TIGR00518 alaDH alanine dehydr 31.3 36 0.00078 29.8 2.2 37 134-171 167-205 (370)
452 PF01047 MarR: MarR family; I 30.9 41 0.00088 20.4 1.9 33 15-48 5-51 (59)
453 TIGR02702 SufR_cyano iron-sulf 30.9 88 0.0019 24.7 4.2 51 16-67 4-72 (203)
454 PRK08163 salicylate hydroxylas 30.7 69 0.0015 27.7 3.9 32 134-165 4-35 (396)
455 cd05188 MDR Medium chain reduc 30.5 2.6E+02 0.0056 22.1 7.1 39 132-171 133-173 (271)
456 PRK06912 acoL dihydrolipoamide 30.3 60 0.0013 29.1 3.5 30 136-165 2-31 (458)
457 PF06690 DUF1188: Protein of u 29.7 1.4E+02 0.0031 24.6 5.1 66 133-204 41-109 (252)
458 TIGR00738 rrf2_super rrf2 fami 29.7 1E+02 0.0023 22.1 4.2 50 7-62 8-71 (132)
459 PF14740 DUF4471: Domain of un 29.1 28 0.00062 29.4 1.1 42 175-224 199-248 (289)
460 PHA03108 poly(A) polymerase sm 28.9 69 0.0015 27.0 3.3 66 134-200 61-139 (300)
461 cd05291 HicDH_like L-2-hydroxy 28.8 2.3E+02 0.005 23.9 6.7 87 136-223 2-107 (306)
462 PF03721 UDPG_MGDP_dh_N: UDP-g 28.6 89 0.0019 24.4 3.8 87 136-223 2-113 (185)
463 PRK07236 hypothetical protein; 28.5 76 0.0016 27.5 3.8 32 134-165 6-37 (386)
464 KOG0024 Sorbitol dehydrogenase 28.5 73 0.0016 27.6 3.4 87 131-225 167-268 (354)
465 PLN03209 translocon at the inn 28.4 3.1E+02 0.0066 25.8 7.7 66 133-199 79-167 (576)
466 TIGR02133 RPI_actino ribose 5- 28.3 26 0.00057 26.5 0.7 44 139-182 63-106 (148)
467 PRK09496 trkA potassium transp 28.1 1.7E+02 0.0036 26.0 6.0 61 136-198 2-72 (453)
468 PF00549 Ligase_CoA: CoA-ligas 27.8 84 0.0018 23.9 3.4 34 132-165 34-81 (153)
469 PRK14806 bifunctional cyclohex 27.8 1.6E+02 0.0034 28.3 6.0 84 135-223 4-90 (735)
470 PRK11512 DNA-binding transcrip 27.7 1.1E+02 0.0024 22.5 4.1 51 15-66 42-108 (144)
471 TIGR01884 cas_HTH CRISPR locus 27.6 1.1E+02 0.0023 24.2 4.2 44 15-61 145-202 (203)
472 PRK07535 methyltetrahydrofolat 27.6 93 0.002 25.8 3.9 117 100-225 9-152 (261)
473 PF07574 SMC_Nse1: Nse1 non-SM 27.5 57 0.0012 25.8 2.6 25 34-62 172-196 (200)
474 TIGR02944 suf_reg_Xantho FeS a 27.4 83 0.0018 22.7 3.3 32 27-60 24-69 (130)
475 TIGR03192 benz_CoA_bzdQ benzoy 27.2 70 0.0015 27.2 3.1 23 133-155 125-172 (293)
476 PF04820 Trp_halogenase: Trypt 27.1 75 0.0016 28.6 3.5 31 136-166 1-34 (454)
477 PLN02353 probable UDP-glucose 27.1 2.4E+02 0.0052 25.7 6.8 87 136-223 3-120 (473)
478 PRK15181 Vi polysaccharide bio 26.9 1.5E+02 0.0033 25.3 5.3 63 135-198 16-97 (348)
479 COG1232 HemY Protoporphyrinoge 26.9 84 0.0018 28.4 3.8 30 136-165 2-33 (444)
480 COG1733 Predicted transcriptio 26.8 2.2E+02 0.0048 20.5 5.3 62 5-66 24-91 (120)
481 cd00401 AdoHcyase S-adenosyl-L 26.7 1.1E+02 0.0023 27.4 4.4 81 133-225 201-284 (413)
482 PLN02688 pyrroline-5-carboxyla 26.7 1.8E+02 0.0039 23.7 5.5 80 137-223 3-88 (266)
483 PF14737 DUF4470: Domain of un 26.6 1.5E+02 0.0033 20.4 4.4 40 131-170 21-67 (100)
484 PF01494 FAD_binding_3: FAD bi 26.4 70 0.0015 26.7 3.1 30 136-165 3-32 (356)
485 PRK09126 hypothetical protein; 26.3 74 0.0016 27.5 3.3 30 136-165 5-34 (392)
486 PRK08655 prephenate dehydrogen 26.2 1.4E+02 0.0031 26.7 5.2 81 136-224 2-86 (437)
487 PRK03573 transcriptional regul 26.1 1.4E+02 0.0031 21.8 4.4 34 34-67 66-101 (144)
488 PF00145 DNA_methylase: C-5 cy 26.1 44 0.00094 28.0 1.8 66 136-205 2-75 (335)
489 PRK00066 ldh L-lactate dehydro 26.0 2.3E+02 0.005 24.2 6.2 88 133-221 5-110 (315)
490 PRK06474 hypothetical protein; 25.9 94 0.002 24.1 3.5 56 7-62 5-79 (178)
491 PF04703 FaeA: FaeA-like prote 25.8 1.2E+02 0.0026 19.2 3.3 32 17-48 4-49 (62)
492 PLN02927 antheraxanthin epoxid 25.8 83 0.0018 30.0 3.7 34 132-165 79-112 (668)
493 PLN02166 dTDP-glucose 4,6-dehy 25.7 2E+02 0.0044 25.7 6.0 62 134-196 120-189 (436)
494 PF03965 Penicillinase_R: Peni 25.7 52 0.0011 23.3 1.9 34 14-48 4-55 (115)
495 PF00036 EF-hand_1: EF hand; 25.7 64 0.0014 16.8 1.8 23 18-40 5-28 (29)
496 PF09821 AAA_assoc_C: C-termin 25.6 80 0.0017 22.9 2.8 37 29-70 9-48 (120)
497 PF13450 NAD_binding_8: NAD(P) 25.6 71 0.0015 20.3 2.3 25 140-165 2-27 (68)
498 TIGR00872 gnd_rel 6-phosphoglu 25.5 1.2E+02 0.0025 25.5 4.3 78 137-223 3-86 (298)
499 PRK07045 putative monooxygenas 25.5 82 0.0018 27.3 3.5 32 134-165 5-36 (388)
500 PF06163 DUF977: Bacterial pro 25.4 1.3E+02 0.0029 22.1 3.9 44 11-58 10-67 (127)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=2.8e-35 Score=241.73 Aligned_cols=167 Identities=34% Similarity=0.670 Sum_probs=146.2
Q ss_pred CCeEeCChhchhhhhCCC-CC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHH
Q 038208 53 EEAYGLTASSTLLIKENP-FS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMA 112 (228)
Q Consensus 53 ~~~~~~t~~~~~l~~~~~-~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 112 (228)
+++|+||++|+.|+.+++ .+ |.++++++. ++|+..+|.++|+|+.++|+..+.|+++|+
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999997776655 22 667777776 789888999999999999999999999999
Q ss_pred hccchhH-HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCC
Q 038208 113 SDSEIMT-SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 113 ~~~~~~~-~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p~ 191 (228)
..+.... ..++. .++ +++..+|||||||+|.++.+++++||+++++++|+|++++.+++.+||++++|||++++|.
T Consensus 82 ~~~~~~~~~~~~~-~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLE-AFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHH-HST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhc-ccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9888777 67777 777 7888999999999999999999999999999999999999988899999999999998999
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
+|+|++++|||+|+|++|.+||++++++|+||
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=235.11 Aligned_cols=219 Identities=29% Similarity=0.440 Sum_probs=186.8
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH----------------HHHHHHhCCceeecccCCCCCeEeCChhchhh
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE----------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLL 65 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e----------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l 65 (228)
+++..+++|.+|+||||||+|+..++|..++- +||.|+++++++....+ .. .|++++.++++
T Consensus 15 ~~~~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~-~Y~~~~~~~~~ 92 (342)
T KOG3178|consen 15 NGFALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE-VYSATPVCKYF 92 (342)
T ss_pred hhhhhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-eeeccchhhhh
Confidence 67889999999999999999998642322221 99999999999987521 11 79999999966
Q ss_pred hhC-CCCC-------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHhccchhHHHHHHH
Q 038208 66 IKE-NPFS-------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMASDSEIMTSFVVKA 125 (228)
Q Consensus 66 ~~~-~~~~-------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~ 125 (228)
.++ +..+ +.+.+..++ .+|..++|+.+|+|...++.....|+++|...+....+.+++
T Consensus 93 l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~- 170 (342)
T KOG3178|consen 93 LKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILE- 170 (342)
T ss_pred eecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhh-
Confidence 643 3333 334444554 578889998899999999988899999999999888878888
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPET-DNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~-~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
.+. .++.....||||||.|..+..++..||+++++.+|+|.+++.+... +.|+.+.||+|.+.|..|+|++.||||||
T Consensus 171 ~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 171 VYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDW 249 (342)
T ss_pred hhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccC
Confidence 776 4788999999999999999999999999999999999999988875 78999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++|.+||+|++++|+|||+
T Consensus 250 tDedcvkiLknC~~sL~~~Gk 270 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGK 270 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCE
Confidence 999999999999999999974
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=8.6e-33 Score=234.51 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhhhhC-C
Q 038208 5 LSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKE-N 69 (228)
Q Consensus 5 ~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~-~ 69 (228)
+...+|++|+++||||+|++ +|.|++| |||+|+++|+|+++ ++.|++|+.++.+..+ +
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~ 74 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTP 74 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCc
Confidence 45789999999999999987 7999998 99999999999997 5899999999855543 3
Q ss_pred CC---C------------------hHHhhccCCCCccccccCCChhhhcccCccHHHHHHHHHHh-ccchhHHHHHHHhh
Q 038208 70 PF---S------------------LSSWFKGTELTLWGTVHGIKFWEFLNQNPGINQRFNEAMAS-DSEIMTSFVVKAEC 127 (228)
Q Consensus 70 ~~---~------------------l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~-~~~~~~~~~~~~~~ 127 (228)
+. + +.+.++. .++|. ..+++....++. ..|...|.. ......+.+++ .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~--~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~ 145 (306)
T TIGR02716 75 KEPNLHQTPVAKAMAFLADDFYMGLSQAVRG--QKNFK-----GQVPYPPVTRED-NLYFEEIHRSNAKFAIQLLLE-EA 145 (306)
T ss_pred cchhhhcCchHHHHHHHHHHHHHhHHHHhcC--Ccccc-----cccCCCCCCHHH-HHhHHHHHHhcchhHHHHHHH-Hc
Confidence 31 1 1111111 11221 112222222222 345555543 33344455566 55
Q ss_pred hhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehh
Q 038208 128 KQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 128 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~ 199 (228)
+ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|++|+|++++
T Consensus 146 ~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~ 223 (306)
T TIGR02716 146 K--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 223 (306)
T ss_pred C--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence 5 67788999999999999999999999999999999999887653 5789999999997 677899999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|+|+++++.++|++++++|+|||.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~ 249 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGR 249 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999999963
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.66 E-value=4.3e-16 Score=112.62 Aligned_cols=92 Identities=25% Similarity=0.498 Sum_probs=79.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCC-CC-CC-CCceEeeehh-hh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDM-FQ-FV-PPADAFLFKL-VF 201 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~-~~-~~-p~~D~v~~~~-vl 201 (228)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+||+++++|+ .. +. +.||+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999999 888877653 68999999999 33 33 3599999999 67
Q ss_pred cCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
|++. .++..++|+++++.|+|||.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcE
Confidence 7554 46789999999999999964
No 5
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=2.6e-15 Score=123.80 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=83.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA--FPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~v 200 (228)
.+..+|||||||+|..+..+++. +|+.+++++|+ |.+++.+++ ..+++++.+|+.+ +.+.+|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 46689999999999999999884 68999999999 999988764 3489999999987 6667999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++++...++++++++|+|||.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~ 159 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGA 159 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCE
Confidence 9999988889999999999999974
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=2.9e-15 Score=121.54 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=82.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCC--ceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh 202 (228)
++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...|+|+.+|+.+ |+|+ ||+|++++.|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 578999999999999999999999999999999 899998875 2239999999998 8884 99999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+|. .+.|++++|+|||||.
T Consensus 131 nv~d~--~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 131 NVTDI--DKALKEMYRVLKPGGR 151 (238)
T ss_pred cCCCH--HHHHHHHHHhhcCCeE
Confidence 99977 6899999999999973
No 7
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=135.80 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=103.3
Q ss_pred CChhhhcccCccHHHHHHHHHHhccchh--HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hH
Q 038208 91 IKFWEFLNQNPGINQRFNEAMASDSEIM--TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PH 167 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~ 167 (228)
..+|+++..+++..++|.+.|....... ...... .++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~-i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ 453 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRI-ILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN 453 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHH-Hhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 4678888888888888988776543331 111122 333 44678999999999999999999999999999999 77
Q ss_pred HHhcCCC-----CCCeEEEeCCCCC-C--CC--CceEeeehhhhcCC-----------ChhHHHHHHHHHHHHhccCCC
Q 038208 168 VVANLPE-----TDNLKYIAGDMFQ-F--VP--PADAFLFKLVFHGL-----------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 168 ~i~~a~~-----~~rv~~~~gD~~~-~--~p--~~D~v~~~~vlh~~-----------~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++.+++ ..+++++++|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|||||.
T Consensus 454 MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 454 VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcE
Confidence 8877653 3578889999876 3 44 39999999999976 356789999999999999974
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=3.2e-15 Score=123.77 Aligned_cols=100 Identities=21% Similarity=0.351 Sum_probs=85.0
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CceEee
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP--PADAFL 196 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p--~~D~v~ 196 (228)
..+++ .+. .....+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+++++.+|+.+..+ .||+|+
T Consensus 19 ~~ll~-~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLA-RVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 44566 554 45678999999999999999999999999999999 899988875 479999999865322 599999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.++|++++. .++++++++.|||||.
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~ 121 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAPGSW 121 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCCCcE
Confidence 99999988865 6899999999999974
No 9
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=3.2e-15 Score=122.61 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=83.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~v 200 (228)
....+|||||||+|.++..+++++ |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999974 7899999999 899987764 3579999999987 6677999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++++...+|++++++|+|||.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 9999988889999999999999974
No 10
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.59 E-value=2.3e-15 Score=107.11 Aligned_cols=88 Identities=19% Similarity=0.417 Sum_probs=73.9
Q ss_pred EEEecCCCcHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeeh-hhhcC
Q 038208 137 LVDVGGGNGSFSRIISEAF---PGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFK-LVFHG 203 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~-~vlh~ 203 (228)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++ ..+++++++|+.+ ++. .+|+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 889887764 3589999999987 433 59999995 55999
Q ss_pred CChhHHHHHHHHHHHHhccCC
Q 038208 204 LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG 224 (228)
+++++..++|+++++.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999996
No 11
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.58 E-value=5.6e-16 Score=109.83 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=58.3
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEeCCCCCCC-C-CceEeeehhhhcCCC
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TD---NLKYIAGDMFQFV-P-PADAFLFKLVFHGLG 205 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~---rv~~~~gD~~~~~-p-~~D~v~~~~vlh~~~ 205 (228)
||||||+|.++..+++++|..+++++|+ |.+++.+++ .. ++++...|..+.. + .||+|++.++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899987775 22 3444555554433 3 599999999999994
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+...+|+++++.|+|||.
T Consensus 81 --~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-E
T ss_pred --hHHHHHHHHHHHcCCCCC
Confidence 446999999999999974
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=3.5e-15 Score=121.72 Aligned_cols=93 Identities=19% Similarity=0.352 Sum_probs=71.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCC--ceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPP--ADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~--~D~v~~~~ 199 (228)
..+..+|||||||+|..+..++++. |+.+++++|+ +.+++.+++ ..+|+++++|..+ |+|+ ||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999885 6789999999 899998874 3589999999988 7874 99999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+++|. .+.|++++++|||||.
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGR 148 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEE
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeE
Confidence 99999986 5789999999999974
No 13
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=3.2e-14 Score=117.85 Aligned_cols=102 Identities=20% Similarity=0.375 Sum_probs=86.3
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceE
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADA 194 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~ 194 (228)
...++. .++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+..+ .+|+
T Consensus 20 ~~~ll~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 20 ARDLLA-RVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHHHHh-hCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccE
Confidence 345555 554 56678999999999999999999999999999999 888988875 5689999999976323 5999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++.++|+.+|. .++|++++++|+|||.
T Consensus 97 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~ 125 (258)
T PRK01683 97 IFANASLQWLPDH--LELFPRLVSLLAPGGV 125 (258)
T ss_pred EEEccChhhCCCH--HHHHHHHHHhcCCCcE
Confidence 9999999988765 6899999999999974
No 14
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=114.44 Aligned_cols=102 Identities=21% Similarity=0.376 Sum_probs=89.9
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceE
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADA 194 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~ 194 (228)
+..++. .++ .....+|+|+|||+|..+..+++++|+.+++++|- |.|++.|+. .++++|..+|+.+-.| .+|+
T Consensus 19 a~dLla-~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 19 ARDLLA-RVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHHHHh-hCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccch
Confidence 355666 666 67889999999999999999999999999999998 999998875 8899999999987434 6999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.+-+||..+|- .++|.++...|.|||+
T Consensus 96 lfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 96 LFANAVLQWLPDH--PELLPRLVSQLAPGGV 124 (257)
T ss_pred hhhhhhhhhcccc--HHHHHHHHHhhCCCce
Confidence 9999999977765 7899999999999986
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=1e-14 Score=101.64 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=73.3
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHH
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~ 210 (228)
||||||+|..+..++++ +..+++++|. +.+++.+++ ..+++++.+|+.+ ++|+ +|+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8999999999 777877764 5678899999988 6763 9999999999999 4458
Q ss_pred HHHHHHHHHhccCCC
Q 038208 211 KILKKRREAIASNGE 225 (228)
Q Consensus 211 ~il~~~~~aL~pgG~ 225 (228)
+++++++++|||||.
T Consensus 78 ~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 78 AALREIYRVLKPGGR 92 (95)
T ss_dssp HHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHcCcCeE
Confidence 999999999999974
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=3.2e-14 Score=118.33 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=84.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~ 191 (228)
..++. .+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ .++++++.+|+.+ ++| .
T Consensus 42 ~~~l~-~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILS-DIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 34455 444 5677899999999999999998875 679999999 788776653 4689999999987 666 3
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..+++++++++...+|+++++.|||||.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence 9999999998888877778999999999999974
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=2.6e-14 Score=113.98 Aligned_cols=101 Identities=26% Similarity=0.286 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p- 190 (228)
+.+++ .+. .....+|||+|||+|..+..++++ ..+++++|+ +.+++.+++ ..++++...|+.+ +++
T Consensus 20 ~~l~~-~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 20 SEVLE-AVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred HHHHH-hcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 44555 554 445689999999999999999986 568999999 888876653 3468899999976 444
Q ss_pred CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++++...++++++++|+|||.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 49999999999999988889999999999999985
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.54 E-value=6.1e-14 Score=116.51 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=80.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCC--ceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVPP--ADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p~--~D~v~ 196 (228)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +++++.+++ .++++++.+|+.+ |+++ ||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 3456899999999999999999875 6789999999 899887753 3479999999987 6663 99999
Q ss_pred ehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+..++|++++. .++|++++++|||||.
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSR 177 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcE
Confidence 99999999876 6799999999999974
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.54 E-value=2.1e-14 Score=109.72 Aligned_cols=91 Identities=24% Similarity=0.376 Sum_probs=79.2
Q ss_pred CCCeEEEecCCCcHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIIS-EAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~~~v 200 (228)
+..+|||+|||+|.++..++ +.+|..+++++|+ +.+++.++. .++++|..+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5588999999999 899988764 4589999999998 4 43 6999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+|+++.+.|+|||.
T Consensus 83 l~~~~~~--~~~l~~~~~~lk~~G~ 105 (152)
T PF13847_consen 83 LHHFPDP--EKVLKNIIRLLKPGGI 105 (152)
T ss_dssp GGGTSHH--HHHHHHHHHHEEEEEE
T ss_pred hhhccCH--HHHHHHHHHHcCCCcE
Confidence 9999887 5889999999999974
No 20
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.51 E-value=1.5e-13 Score=114.23 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCcH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC---------------------------
Q 038208 133 GLGSLVDVGGGNGS----FSRIISEAFP-----GIKCTVLDL-PHVVANLPET--------------------------- 175 (228)
Q Consensus 133 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-p~~i~~a~~~--------------------------- 175 (228)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5666777665 578999999 8899877651
Q ss_pred ------CCeEEEeCCCCCC-CC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 176 ------DNLKYIAGDMFQF-VP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 176 ------~rv~~~~gD~~~~-~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|+|..+|+.++ .| .||+|+++++||++++++..+++++++++|+|||.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~ 237 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGY 237 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeE
Confidence 3799999999883 33 49999999999999999889999999999999974
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=2e-13 Score=117.58 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 789999999 777776543 3689999999987 665 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+++|. .+++++++++|||||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGR 218 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcE
Confidence 9999875 6899999999999974
No 22
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.47 E-value=3.9e-13 Score=108.14 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCC--ce
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG------IKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVPP--AD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p~--~D 193 (228)
...++|||+||||..+..|++.-+. .+++++|+ |++++.+++ ..++.++++|..+ |+|. +|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 3579999999999999999998877 78999999 999976542 4569999999988 8884 99
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.|++..-+-+|++. .+.|++++++|||||
T Consensus 180 ~yTiafGIRN~th~--~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 180 AYTIAFGIRNVTHI--QKALREAYRVLKPGG 208 (296)
T ss_pred eEEEecceecCCCH--HHHHHHHHHhcCCCc
Confidence 99999999999988 689999999999996
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.46 E-value=3.2e-13 Score=110.04 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=79.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
.....+|||||||+|.++..+++.. |+.+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+|+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 4556899999999999999999986 6789999999 888876653 4589999999977 555 399999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. .++|+++.+.|+|||.
T Consensus 123 ~l~~~~~~--~~~l~~~~~~Lk~gG~ 146 (231)
T TIGR02752 123 GLRNVPDY--MQVLREMYRVVKPGGK 146 (231)
T ss_pred ccccCCCH--HHHHHHHHHHcCcCeE
Confidence 99988776 5799999999999974
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.46 E-value=3.3e-13 Score=107.42 Aligned_cols=101 Identities=23% Similarity=0.189 Sum_probs=81.0
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~ 191 (228)
..+++ .+. .....+|||||||+|..+..++++ ..+++++|+ |.+++.+++ .-++++...|+.. +++ .
T Consensus 20 ~~l~~-~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 20 SAVRE-AVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNED 94 (195)
T ss_pred HHHHH-Hhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCC
Confidence 34445 444 345679999999999999999986 568999999 888876543 2247788888765 344 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+|++..++|++++++...+++++++.|+|||.
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 9999999999999888888999999999999974
No 25
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=3.2e-13 Score=108.18 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=80.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~~~d 206 (228)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+++++..+|+.++++ .||+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45677999999999999999999889999999999 899998876 5678899999988655 4999999999999988
Q ss_pred hHHHHHHHHHHHHhc
Q 038208 207 EDGLKILKKRREAIA 221 (228)
Q Consensus 207 ~~~~~il~~~~~aL~ 221 (228)
++..++++++++.++
T Consensus 121 ~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 121 DNLPTAYRELYRCSN 135 (204)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888999999999873
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=2.6e-13 Score=110.01 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=77.3
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CceEeeehhhhcCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGL 204 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~ 204 (228)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777766553 4689999999976 455 49999999999998
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
++. ..+|+++++.|+|||.
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGH 99 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCE
Confidence 775 6899999999999974
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=2.8e-13 Score=112.21 Aligned_cols=90 Identities=22% Similarity=0.381 Sum_probs=76.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--FVP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~~p--~~D~v~~~~ 199 (228)
+...+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 568999999 889887764 3689999999865 233 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+||++++. ..+|+++++.|||||.
T Consensus 121 vl~~~~~~--~~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRPGGA 144 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCCCeE
Confidence 99998876 5799999999999975
No 28
>PLN03075 nicotianamine synthase; Provisional
Probab=99.43 E-value=5e-13 Score=111.62 Aligned_cols=92 Identities=13% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCCeEEEecCCCcHHHH--HHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC---CCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSR--IISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV---PPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~---p~~D~v~~~ 198 (228)
.+++|+|||||.|-++. .+++.+|+.+++++|+ |++++.|++ .+|++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 67899999999885433 3445689999999999 888876653 478999999998732 359999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+||+|..++..++|+++++.|+|||.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGAL 228 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcE
Confidence 99999877779999999999999974
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.41 E-value=6.4e-13 Score=113.60 Aligned_cols=91 Identities=26% Similarity=0.301 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~ 205 (228)
...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 888887764 4579999999977 555 399999999999999
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
+. .++|+++++.|+|||.
T Consensus 193 d~--~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGK 210 (340)
T ss_pred CH--HHHHHHHHHhcCCCcE
Confidence 87 4689999999999975
No 30
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.41 E-value=1.9e-12 Score=106.90 Aligned_cols=116 Identities=23% Similarity=0.288 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccch------hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-
Q 038208 103 INQRFNEAMASDSEI------MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE- 174 (228)
Q Consensus 103 ~~~~f~~~m~~~~~~------~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~- 174 (228)
..+.|.++...+... .+..+++ .++ .....+|||||||+|.++..+.+. ..+++++|+ +.+++.+++
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLA-MLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHH-hcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhh
Confidence 445666665554431 2233344 333 234679999999999999988774 578999999 889988765
Q ss_pred CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...+.++.+|+.+ +++ .||+|+++.++|..+|. ..+|+++++.|+|||.
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~ 135 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGV 135 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeE
Confidence 3456789999977 555 39999999999866654 6899999999999974
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=2.2e-12 Score=104.43 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=95.0
Q ss_pred hhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc
Q 038208 93 FWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN 171 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~ 171 (228)
.|+.+..++.....+...|..........+++ .+.....+..+|||||||+|.++..+++. +.+++++|+ |.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLD-WLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQM 92 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence 35555555555556666664433333444444 33311235789999999999999999886 458999999 888887
Q ss_pred CCC-------CCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 172 LPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 172 a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++ .+++++..+|+.+....||+|++..+++++++++...+++++++.+++++
T Consensus 93 a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 93 ARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERV 152 (219)
T ss_pred HHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCE
Confidence 764 25899999999763356999999999999988878889999999888764
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=1.4e-12 Score=117.21 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
+.+..+|||||||+|..+..+++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| .||+|++..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 4556799999999999999999876 779999999 788876643 4589999999987 565 39999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++++. .++|++++++|+|||.
T Consensus 343 ~h~~d~--~~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 343 LHIQDK--PALFRSFFKWLKPGGK 364 (475)
T ss_pred cccCCH--HHHHHHHHHHcCCCeE
Confidence 999876 5899999999999974
No 33
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.40 E-value=1.7e-12 Score=105.73 Aligned_cols=91 Identities=22% Similarity=0.373 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCCh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD 206 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d 206 (228)
...+|||||||+|.++..+++.+|..+++++|+ +.++..++. .++++++.+|+.+ +++ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999999 777766654 4589999999977 544 3999999999998766
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+|+++++.|+|||.
T Consensus 114 ~--~~~l~~~~~~L~~~G~ 130 (240)
T TIGR02072 114 L--SQALSELARVLKPGGL 130 (240)
T ss_pred H--HHHHHHHHHHcCCCcE
Confidence 5 5799999999999974
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=2.3e-12 Score=104.82 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=79.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
+....+|||||||+|.++..+++.+ |..+++++|+ +..++.+++ ..++++..+|+.+ +++ .||+|++.++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5567899999999999999999998 7889999999 777765543 4679999999876 554 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|++++. ..+++++++.|+|||.
T Consensus 97 ~~~~~~~--~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 97 LQHLEDP--ARALAEIARVLRPGGR 119 (241)
T ss_pred hhccCCH--HHHHHHHHHHhcCCcE
Confidence 9999876 6789999999999973
No 35
>PRK05785 hypothetical protein; Provisional
Probab=99.38 E-value=4.2e-12 Score=103.30 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDE 207 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~ 207 (228)
....+|||||||+|.++..+++++ +.+++++|+ +++++.+++. ..++.+|+.+ |++ .||+|++..+||+++|.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 346899999999999999999987 679999999 8999988753 3467888877 666 39999999999998876
Q ss_pred HHHHHHHHHHHHhccC
Q 038208 208 DGLKILKKRREAIASN 223 (228)
Q Consensus 208 ~~~~il~~~~~aL~pg 223 (228)
.+.|++++++|||.
T Consensus 127 --~~~l~e~~RvLkp~ 140 (226)
T PRK05785 127 --EKVIAEFTRVSRKQ 140 (226)
T ss_pred --HHHHHHHHHHhcCc
Confidence 67999999999994
No 36
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.38 E-value=9e-13 Score=103.01 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=74.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
-....+++|+|||.|.++..|+.++ -+++++|+ +..++.+++ .++|+++..|+-+..| .||+|+++-++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4556899999999999999999996 46899999 888888764 6799999999987656 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHHhccCCC
Q 038208 204 LGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
+.+ ++...+++++.++|+|||.
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~ 141 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGH 141 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCE
Confidence 986 6788999999999999973
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=2.4e-12 Score=108.40 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~ 203 (228)
....+|||||||+|..+..++++ +.+++++|. +.+++.+++ .-++++...|+.. +++ .||+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999986 578999999 788776543 3378889999876 344 4999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++++...+++++++.|+|||.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcE
Confidence 9988889999999999999974
No 38
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=3e-12 Score=110.94 Aligned_cols=92 Identities=27% Similarity=0.417 Sum_probs=77.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC--CceEeeehhhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQFVP--PADAFLFKLVF 201 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~~p--~~D~v~~~~vl 201 (228)
..+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++..|.++.++ .||+|+++-.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 46999999999999999999999999999999 778877653 2478999999987553 49999997665
Q ss_pred c---CCChhHHHHHHHHHHHHhccCCC
Q 038208 202 H---GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h---~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
| .++++...++++.+++.|+|||.
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG~ 335 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKINGE 335 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCCE
Confidence 5 35667778999999999999974
No 39
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=1.1e-12 Score=111.56 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
...+|||||||+|.++..+++ ++.+++++|. +.+++.++. ..+|+++++|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998886 4678999999 888887763 2489999999865 433 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+++|. ..+|+++++.|||||.
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGA 230 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcE
Confidence 999987 5799999999999974
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=1.9e-12 Score=110.54 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQ-FVP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh 202 (228)
...+|||||||+|.++..+++..+. +++++|. +.++.+++ ...+++++.+|+.+ +.+ .||+|++..+||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4579999999999999999998766 5999998 55554321 14589999999976 544 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+..+. ..+|+++++.|+|||.
T Consensus 201 H~~dp--~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVPGGE 221 (322)
T ss_pred ccCCH--HHHHHHHHHhcCCCcE
Confidence 98776 5799999999999974
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.35 E-value=5.7e-12 Score=102.86 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
.+..+|||||||+|.++..+++. .|+.+++++|+ |.+++.+++ ..++++...|... +.+ .+|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 46779999999 899988765 3456666665433 223 4999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhc
Q 038208 201 FHGLGDEDGLKILKKRREAIA 221 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~ 221 (228)
||++++++...+|+++++.++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC
Confidence 999999888899999999987
No 42
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=3.7e-12 Score=100.59 Aligned_cols=90 Identities=26% Similarity=0.374 Sum_probs=74.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh 202 (228)
.....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|...+++ .+|+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45678999999999999999999999999999999 888877653 3579999999865555 499999876654
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++ ..+++++++.|+|||.
T Consensus 109 ~~-----~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 109 NL-----TAIIDWSLAHLHPGGR 126 (187)
T ss_pred CH-----HHHHHHHHHhcCCCeE
Confidence 33 4689999999999974
No 43
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.34 E-value=3.3e-12 Score=108.22 Aligned_cols=94 Identities=17% Similarity=0.299 Sum_probs=76.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-C-----ceE
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF--VP-P-----ADA 194 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~--~p-~-----~D~ 194 (228)
....+|||+|||+|..+..++++.+ ..+++++|+ +++++.+++ ..+|.++++|+.+. ++ . ..+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4557899999999999999999987 689999999 788766643 24577889999763 33 2 235
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++..++|+++++++..+|++++++|+|||.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5667889999999999999999999999973
No 44
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.34 E-value=5.7e-12 Score=98.13 Aligned_cols=93 Identities=24% Similarity=0.427 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
...++||+|||+|..+..+++++|+.+++++|+ +.+++.+++ .+.++++..|.+++.+ .||+|+++-.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999999999999999999999999 888877654 2339999999999665 4999999988886
Q ss_pred CCh---hHHHHHHHHHHHHhccCCC
Q 038208 204 LGD---EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d---~~~~~il~~~~~aL~pgG~ 225 (228)
-.+ +-..++++++.+.|+|||.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCE
Confidence 654 4568899999999999974
No 45
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.34 E-value=5.1e-12 Score=105.54 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=78.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
+....+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999988777764 6678999999 888888764 3689999999976 555 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. .++++++++.|+|||.
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGR 178 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcE
Confidence 99988765 5799999999999974
No 46
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.33 E-value=1e-11 Score=100.09 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-C---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQ-F--- 188 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~-~--- 188 (228)
....+|||+|||.|..+..++++ +.+++++|+ |..++.+. +..+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 778999999 77777531 13579999999988 3
Q ss_pred CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.||.|+-+.++|+++++...+.++++.++|+|||.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 2349999999999999999999999999999999974
No 47
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.33 E-value=5.7e-12 Score=106.86 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=73.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CC-CCceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQ-FV-PPADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~-~~-p~~D~v~~~~vl 201 (228)
.+..+|||||||+|.++..+++..+. +++++|. +.++.+++ ...++.+...|+.+ +. ..||+|++..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 34689999999999999999988764 7999998 65654321 24688888888865 32 359999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++. ...|++++++|+|||.
T Consensus 199 ~H~~dp--~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 199 YHRKSP--LEHLKQLKHQLVIKGE 220 (314)
T ss_pred hccCCH--HHHHHHHHHhcCCCCE
Confidence 999876 5799999999999974
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=9.3e-12 Score=111.85 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC---CCC-
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ---FVP- 190 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~---~~p- 190 (228)
..+++ .++ ..+..+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ .++++++++|+.+ ++|
T Consensus 27 ~~il~-~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILS-LLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHh-hcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 44445 444 3356799999999999999999985 47899999 888876542 4689999999964 344
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|++..++|++++++...+|+++++.|+|||.
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGY 137 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeE
Confidence 39999999999999998889999999999999974
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.31 E-value=2.2e-11 Score=99.23 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~ 199 (228)
.+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .+|+|++.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 3457999999999999999999998 789999999 777766553 3579999999977 433 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|++++. ..+|+++.+.|+|||.
T Consensus 130 ~l~~~~~~--~~~l~~~~~~L~~gG~ 153 (239)
T PRK00216 130 GLRNVPDI--DKALREMYRVLKPGGR 153 (239)
T ss_pred ccccCCCH--HHHHHHHHHhccCCcE
Confidence 99998875 6789999999999974
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.29 E-value=1.8e-11 Score=105.28 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=77.2
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-CceEeeehhhhcCC--
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP-PADAFLFKLVFHGL-- 204 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~-- 204 (228)
..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .-..+++..|.++..+ .||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 46899999999999999999999999999999 788877754 2346788889877555 49999999999864
Q ss_pred -ChhHHHHHHHHHHHHhccCCC
Q 038208 205 -GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 -~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+...++++++.+.|+|||.
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~ 298 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGE 298 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCE
Confidence 345678999999999999974
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.28 E-value=6.5e-12 Score=98.76 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-CCceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FV-PPADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~-p~~D~v~~~~vlh~ 203 (228)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ +. ..||+|++.. +|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 367999999999999999999999999999999 676665442 3579999999976 22 3599998876 544
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ ..+++.+++.|+|||.
T Consensus 121 ~-----~~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGY 137 (181)
T ss_pred H-----HHHHHHHHHhcCCCCE
Confidence 3 3578888999999974
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=3.8e-11 Score=87.86 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FV-PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~-p~~D~v~~~~ 199 (228)
.....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.. .. +.+|+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 34567999999999999999999999999999999 777776553 4679999998764 12 2599999866
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+ ...++++++++.|+|||.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRPGGR 117 (124)
T ss_pred cch-----hHHHHHHHHHHHcCCCCE
Confidence 443 345899999999999974
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=2.2e-11 Score=98.95 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh~ 203 (228)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .+++++..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999875 45999999 888877764 25899999995333345999999999999
Q ss_pred CChhHHHHHHHHHHHHhccC
Q 038208 204 LGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pg 223 (228)
+++++...+++++.+.++++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~ 159 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGS 159 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCe
Confidence 99998899999999877554
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.28 E-value=1.3e-11 Score=97.24 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=78.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-FVP-P 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~~p-~ 191 (228)
+.+++ .++ .-+..++||||||.|..+..++++ +..++++|. +..++.++. .-.|+....|+.+ .++ .
T Consensus 20 s~v~~-a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~ 94 (192)
T PF03848_consen 20 SEVLE-AVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEE 94 (192)
T ss_dssp HHHHH-HCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTT
T ss_pred HHHHH-HHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCC
Confidence 34555 555 446789999999999999999998 778999999 666655432 4459999999977 555 4
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+|++..|+++++.+...++++++.++++|||.
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGY 128 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEE
Confidence 9999999999999999999999999999999973
No 55
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.28 E-value=1.5e-11 Score=94.11 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=67.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CC--CCceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FV--PPADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~--p~~D~v~~~~vlh~~~d 206 (228)
.....+|||||||+|.++..+++... +++++|+ +.+++. .++.....+... +. ..||+|++..+||+.+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977643 9999999 777776 233333332223 22 25999999999999996
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
. ..+|+++++.|||||.
T Consensus 94 ~--~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 94 P--EEFLKELSRLLKPGGY 110 (161)
T ss_dssp H--HHHHHHHHHCEEEEEE
T ss_pred H--HHHHHHHHHhcCCCCE
Confidence 4 7999999999999974
No 56
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.27 E-value=1.1e-11 Score=103.34 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=76.8
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------ETDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------~~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||-|.++..+++++ +++++++.+ ++..+.++ ..+++++...|+.+--+.
T Consensus 52 ~~~~~-~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 52 DLLCE-KLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHT-TTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHH-HhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 33455 554 6788999999999999999999998 899999999 55444332 267899999999763337
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.|++..++.+..++.-..+++++.+.|+|||.
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 9999999999999988889999999999999974
No 57
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.27 E-value=2.7e-11 Score=97.70 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVP--PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh 202 (228)
.+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+|+|++..++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 45789999999999999999999987 79999999 777766553 3579999999987 444 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.++. ..+++++++.|+|||.
T Consensus 118 ~~~~~--~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 118 NVTDI--QKALREMYRVLKPGGR 138 (223)
T ss_pred CcccH--HHHHHHHHHHcCCCcE
Confidence 88764 6899999999999974
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.26 E-value=1.8e-11 Score=96.64 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP-PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh 202 (228)
+...+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|+++.+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 788876653 3459999999977 323 4999998752
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ....+++++++.|+|||.
T Consensus 122 --~--~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKPGGR 140 (187)
T ss_pred --c--CHHHHHHHHHHhcCCCeE
Confidence 1 235789999999999974
No 59
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.25 E-value=7.4e-12 Score=100.50 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC--CeEEEeCCCCC-CC--CCceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TD--NLKYIAGDMFQ-FV--PPADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~--rv~~~~gD~~~-~~--p~~D~v~~~~vlh~ 203 (228)
...+|||||||-|.++..+++.. .++++.|+ +..|+.|+. .. .+++.+....+ .. ..||+|++..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46799999999999999999985 88999999 888888774 22 34455555544 22 35999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|++ .+++.+.+.+||||+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~ 156 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGI 156 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcE
Confidence 99995 599999999999985
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.24 E-value=1.3e-11 Score=98.79 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC-CC-C--CC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDM-FQ-F--VP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~-~~-~--~p--~~D~v~~~~ 199 (228)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 888876653 36899999999 33 3 43 399998876
Q ss_pred hhcCCCh------hHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGD------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d------~~~~~il~~~~~aL~pgG~ 225 (228)
..+.... .....+|+++++.|+|||.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 151 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGE 151 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCE
Confidence 5432211 1236789999999999974
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.23 E-value=5e-11 Score=104.11 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=78.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCCCceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQFVPPADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d 206 (228)
+.+..+|||||||+|.++..+++++ +.+++++|+ +++++.+++ ...+++...|+.+....||+|++..++++.++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 4567899999999999999999876 679999999 888877664 33588888888653235999999999999888
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
+....+++++++.|||||.
T Consensus 244 ~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred HHHHHHHHHHHHHcCCCcE
Confidence 7778999999999999974
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.23 E-value=2e-11 Score=97.01 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C---CC--CceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F---VP--PADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~---~p--~~D~v~~~~ 199 (228)
...++||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 467999999999999999999999999999999 778776643 3589999999965 1 34 388888776
Q ss_pred hhcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
..+ |+... ...+++++++.|+|||.
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGV 127 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCE
Confidence 543 43321 14689999999999975
No 63
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=4e-11 Score=99.28 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=87.2
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~ 191 (228)
..+++ .+. +.+..+|||||||-|.+++.++++| +++++++++ ++..+.+++ ..+|++.-.|+....+.
T Consensus 62 ~~~~~-kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 62 DLILE-KLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHH-hcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 34455 565 7889999999999999999999999 999999999 666555443 56899999999764444
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||-|++.-+++++..+.-...++++++.|+|||.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCce
Confidence 9999999999999998889999999999999975
No 64
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.20 E-value=1.1e-10 Score=94.28 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=78.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCCC----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQF---- 188 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~~---- 188 (228)
.+..+|||+|||.|..+..|+++ +.+++++|+ |..++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 778999999 77776431 136799999999883
Q ss_pred CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 189 ~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.||+|+-+.++|+++++...+.++++.+.|+|||.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 2358999999999999999999999999999999975
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.20 E-value=7.3e-11 Score=92.57 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-CceEeeehhhhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP-PADAFLFKLVFHGL 204 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~ 204 (228)
.+..+|||+|||+|.++..++++.+ +++++|+ |.+++.+++ ..+++++.+|+.+..+ .||+|+++..+|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 888877664 3468899999977433 59999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHHhccCCC
Q 038208 205 GDE-------------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~-------------------~~~~il~~~~~aL~pgG~ 225 (228)
+++ ....+|+++.+.|+|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 542 135789999999999974
No 66
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.6e-11 Score=99.40 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=75.3
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------C----CCeEEEeCCCCCCCCCceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------T----DNLKYIAGDMFQFVPPADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~----~rv~~~~gD~~~~~p~~D~v~~~~v 200 (228)
..+|||||||.|.++..|++. ..+++++|. +.+++.|++ . -|+++.+.|.....+.||.|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 367999999999999999998 478999999 889988764 2 2588888888665566999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++|..|. ..+++.+.+.|||||.
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGR 190 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCc
Confidence 9999877 6899999999999964
No 67
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-10 Score=96.19 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=82.4
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCC-c
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVPP-A 192 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p~-~ 192 (228)
-+++ .++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.+++ .++..+...|.+++.++ |
T Consensus 149 lLl~-~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 149 LLLE-TLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHH-hCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 3455 665 34445999999999999999999999999999999 677877775 23336778888887664 9
Q ss_pred eEeeehhhhcCC---ChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGL---GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~---~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+++=.+|.= .+.-..+|++.+++.|++||+
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 999999999964 344556999999999999974
No 68
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.16 E-value=1.4e-10 Score=97.46 Aligned_cols=93 Identities=22% Similarity=0.372 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehh---
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKL--- 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~--- 199 (228)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|++++++ .+|+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 356899999999999999999999999999999 888887764 3589999999988665 499999751
Q ss_pred ----------hhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 200 ----------VFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 ----------vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
.+++.|. +....+++++.+.|+|||.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 1121111 2346889999999999974
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.13 E-value=2.8e-10 Score=93.60 Aligned_cols=93 Identities=22% Similarity=0.377 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhhc-
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVFH- 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vlh- 202 (228)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++. .++++++.+|++++++ .+|+|+++-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446899999999999999999999999999999 888876653 3479999999988654 499998853322
Q ss_pred -----CCChhH------------------HHHHHHHHHHHhccCCC
Q 038208 203 -----GLGDED------------------GLKILKKRREAIASNGE 225 (228)
Q Consensus 203 -----~~~d~~------------------~~~il~~~~~aL~pgG~ 225 (228)
.+..+. ...+++++.+.|+|||.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 222221 24789999999999974
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.9e-10 Score=97.58 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=73.4
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehh-----
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKL----- 199 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~----- 199 (228)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++.+| .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887764 3579999999987655 499999751
Q ss_pred --------hhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 200 --------VFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 --------vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
..++.|. +....+++++.+.|+|||.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCE
Confidence 1122221 2346889999999999974
No 71
>PRK04266 fibrillarin; Provisional
Probab=99.13 E-value=5.3e-10 Score=90.85 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC-----CC-CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVA----NLPETDNLKYIAGDMFQF-----VP-PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~----~a~~~~rv~~~~gD~~~~-----~p-~~D~v~~~~ 199 (228)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++..+|.++.+|..++ ++ .+|+++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~--- 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY--- 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence 45678999999999999999999988778999999 76665 344457899999998653 22 388887
Q ss_pred hhcCCChh-HHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
|+.++. ....+|+++++.|||||.
T Consensus 147 --~d~~~p~~~~~~L~~~~r~LKpGG~ 171 (226)
T PRK04266 147 --QDVAQPNQAEIAIDNAEFFLKDGGY 171 (226)
T ss_pred --ECCCChhHHHHHHHHHHHhcCCCcE
Confidence 444433 335678999999999974
No 72
>PRK04457 spermidine synthase; Provisional
Probab=99.12 E-value=1.2e-10 Score=96.75 Aligned_cols=93 Identities=23% Similarity=0.387 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC-CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVP-PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p-~~D~v~~~~ 199 (228)
+.+.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999999999999999999 999987763 3789999999865 234 499998752
Q ss_pred hhc--CCChh-HHHHHHHHHHHHhccCCC
Q 038208 200 VFH--GLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh--~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
.+ ..+.. ....+++++++.|+|||+
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGv 172 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGI 172 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcE
Confidence 22 12211 126899999999999975
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=3.7e-10 Score=90.57 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=69.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP---PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p---~~D~v~~~ 198 (228)
..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+.++ .||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 34567999999999999999998864 568999999 788876653 2469999999987433 49999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+++.+ +++.+.|+|||.
T Consensus 150 ~~~~~~~--------~~l~~~L~~gG~ 168 (205)
T PRK13944 150 AAASTIP--------SALVRQLKDGGV 168 (205)
T ss_pred cCcchhh--------HHHHHhcCcCcE
Confidence 8887655 356788999974
No 74
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=4.5e-10 Score=97.28 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVP--PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p--~~D~v~~~~v 200 (228)
....+||||||+|.++..+++++|+..++++|+ +.+++.+.. .+++.++.+|+.. .+| .+|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 456999999999999999999999999999999 777665542 4689999999843 455 3899987654
Q ss_pred hcCCChhHH-----HHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDG-----LKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~-----~~il~~~~~aL~pgG~ 225 (228)
. .|+...- ..+|+.+++.|+|||.
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGT 230 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcE
Confidence 3 2543322 4789999999999974
No 75
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.09 E-value=2e-10 Score=96.02 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=68.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC---eEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CceEeeehhhhcCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI---KCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~ 204 (228)
...+|||||||+|.++..+++..|.. +++++|+ +.+++.+++ .++++++.+|..+ |++ .+|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 888887765 5789999999887 665 3999987543
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
+ ..+++++++|+|||.
T Consensus 161 ~-----~~~~e~~rvLkpgG~ 176 (272)
T PRK11088 161 P-----CKAEELARVVKPGGI 176 (272)
T ss_pred C-----CCHHHHHhhccCCCE
Confidence 1 235789999999974
No 76
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.08 E-value=4.5e-10 Score=94.47 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=73.7
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeeh------
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFK------ 198 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~------ 198 (228)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++++ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888877664 3469999999988765 49999885
Q ss_pred -------hhhcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 199 -------LVFHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 -------~vlh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
.++++-|. +...++++++.+.|+|||.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 22332221 2457899999999999974
No 77
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.08 E-value=9.2e-10 Score=88.51 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VP--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p--~~D~v~~~ 198 (228)
+.+..+|||||||+|.++..++++. +..+++++|+.++. ...+++++.+|+.++ ++ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 3566799999999999999999987 55799999995432 245699999999873 33 39999998
Q ss_pred hhhcCCChh---------HHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDE---------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~---------~~~~il~~~~~aL~pgG~ 225 (228)
...|...+. ....+|+.+++.|+|||.
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 777654322 125689999999999974
No 78
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.08 E-value=2.1e-10 Score=83.34 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=72.3
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CC--CceEeeehhhh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F--VP--PADAFLFKLVF 201 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~--~p--~~D~v~~~~vl 201 (228)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+++ . .+ .+|+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 887776653 4789999999977 2 33 49999998877
Q ss_pred cCCCh------hHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGD------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d------~~~~~il~~~~~aL~pgG~ 225 (228)
+.... +....+++++.+.|+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~ 110 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGV 110 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeE
Confidence 65421 2346889999999999975
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=8.2e-10 Score=89.01 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=69.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
+.+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.+++ .++++++.+|..+..+ .||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 5667899999999999999999875 4579999999 888877764 4589999999977332 499999887
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+..+ +.+.+.|+|||.
T Consensus 154 ~~~~~~--------~~l~~~LkpgG~ 171 (212)
T PRK13942 154 AGPDIP--------KPLIEQLKDGGI 171 (212)
T ss_pred Ccccch--------HHHHHhhCCCcE
Confidence 665443 456678999974
No 80
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=4.2e-10 Score=95.61 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCCceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFVPPADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~p~~D~v~~~~v 200 (228)
+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++|...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 578999999 888876653 13678899997543235999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+|+++++....+++.+.+ +.+||
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~ 244 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKR 244 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCE
Confidence 999998877788888875 45543
No 81
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.04 E-value=7.8e-10 Score=87.83 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=70.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CceEeeehhhhcCCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVP--PADAFLFKLVFHGLG 205 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p--~~D~v~~~~vlh~~~ 205 (228)
+...+|||||||+|.++..+++. ...+++++|+ +++++.++. .+++++.+|+.+ +++ .||+|++++++|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 45679999999999999988876 4567899999 778877653 468899999865 243 399999999999997
Q ss_pred hhHHHHHHHHHHHHhccC
Q 038208 206 DEDGLKILKKRREAIASN 223 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pg 223 (228)
+. ..+|+++.+.++++
T Consensus 90 d~--~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 NP--EEILDEMLRVGRHA 105 (194)
T ss_pred CH--HHHHHHHHHhCCeE
Confidence 75 56788888877654
No 82
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=1.3e-09 Score=88.04 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=69.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++..+ +.+++++|+ |++++.+++ .++++++.+|..+..+ .||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 56678999999999999999999864 578999998 888887764 3689999999977332 499999876
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..... .+.+.+.|+|||.
T Consensus 155 ~~~~~--------~~~~~~~L~~gG~ 172 (215)
T TIGR00080 155 AGPKI--------PEALIDQLKEGGI 172 (215)
T ss_pred Ccccc--------cHHHHHhcCcCcE
Confidence 55433 3557888999974
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.03 E-value=9e-10 Score=87.62 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=69.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FV-PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~-p~~D~v~~~~ 199 (228)
.....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++ .++++++.+|..+ .+ +.+|.+++.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~- 116 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE- 116 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-
Confidence 45668999999999999999999899999999999 888877653 3579999999865 22 235665442
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ......+++++.+.|+|||.
T Consensus 117 ----~-~~~~~~~l~~~~~~LkpgG~ 137 (196)
T PRK07402 117 ----G-GRPIKEILQAVWQYLKPGGR 137 (196)
T ss_pred ----C-CcCHHHHHHHHHHhcCCCeE
Confidence 1 23346889999999999974
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=1.8e-09 Score=90.20 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=73.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeehhhh-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFKLVF- 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~~vl- 201 (228)
.+..+|||+|||+|..+..+++..|+.+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|+++-..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567999999999999999999999999999999 777776653 3689999999988654 49999875322
Q ss_pred -----cCCCh------------------hHHHHHHHHHHHHhccCCC
Q 038208 202 -----HGLGD------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 -----h~~~d------------------~~~~~il~~~~~aL~pgG~ 225 (228)
+...+ +....+++++.+.|+|||.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 11111 2236789999999999974
No 85
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=7.9e-10 Score=88.58 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=79.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------------- 174 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------------- 174 (228)
.+..++ .+...+-.+..+|||||.+|.++..|++.+-...++++|+ +..|..|++
T Consensus 45 ~D~rLk-~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLK-VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhh-hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 345566 6654466789999999999999999999998889999999 666665542
Q ss_pred ------------------CCCeEEEeC-------CCCC-CCCCceEeee----hhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 175 ------------------TDNLKYIAG-------DMFQ-FVPPADAFLF----KLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 175 ------------------~~rv~~~~g-------D~~~-~~p~~D~v~~----~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.+++.|+.+ ||.. ..|.||+|++ .||--+|.|+..+++|+++.+.|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 113333333 3443 3456999964 445457999999999999999999997
Q ss_pred C
Q 038208 225 E 225 (228)
Q Consensus 225 ~ 225 (228)
+
T Consensus 204 i 204 (288)
T KOG2899|consen 204 I 204 (288)
T ss_pred E
Confidence 5
No 86
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=1.5e-09 Score=75.66 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=73.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCCC----CCceEeeehhhhcCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------ETDNLKYIAGDMFQFV----PPADAFLFKLVFHGL 204 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------~~~rv~~~~gD~~~~~----p~~D~v~~~~vlh~~ 204 (228)
+++|+|||.|..+..+++ .+..+++++|+ +..+..++ ...+++++.+|+.+.. +.+|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67889999999 66655444 1578999999998732 249999999999875
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+....+++++.+.|+|||.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGV 99 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCE
Confidence 55668999999999999974
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=89.14 Aligned_cols=94 Identities=14% Similarity=0.303 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC--CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVP--PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p--~~D~v~~ 197 (228)
.+...+|||+|||+|..+..+++++++.+++++|+ +.+.+.|++ .+||++++.|+.+ ..+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34589999999999999999999999999999999 777777764 7899999999976 222 3899999
Q ss_pred hhhhcCCChh----------------HHHHHHHHHHHHhccCC
Q 038208 198 KLVFHGLGDE----------------DGLKILKKRREAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~----------------~~~~il~~~~~aL~pgG 224 (228)
+=..+.-++. .-..+++.+...|||||
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 8776654433 24578899999999996
No 88
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=1e-09 Score=87.99 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=79.1
Q ss_pred CeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-----CC--CceEeeehh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF-----VP--PADAFLFKL 199 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~-----~p--~~D~v~~~~ 199 (228)
.++++||||.|...-.+++.+|+ +++..+|. |..++..++ ..|+.....|+..+ .+ ..|++++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 99999999 888887664 56777777787652 11 389999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||.-.+++.....++++++.|||||.
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~ 178 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGS 178 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcE
Confidence 99999999999999999999999975
No 89
>PRK00811 spermidine synthase; Provisional
Probab=98.97 E-value=1.4e-09 Score=91.39 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=72.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC---C-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------TDNLKYIAGDMFQFV---P-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------~~rv~~~~gD~~~~~---p-~~D~v 195 (228)
+++.+||+||||+|..+.++++..+..+++++|+ +.+++.+++ .+|++++.+|..+-+ + .||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 5678999999999999999998655568999999 888887763 468999999987622 2 49999
Q ss_pred eehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
++-..-+..+.. ....+++.+++.|+|||+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGv 186 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGI 186 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 985543332222 136789999999999975
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.97 E-value=3.3e-09 Score=92.55 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC---CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF-VP---PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~-~p---~~D~v~~~~vl 201 (228)
.+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|++++ .| .||+|+++-..
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 888887764 45899999999873 33 39999985432
Q ss_pred cCCCh-----------------------hHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGD-----------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d-----------------------~~~~~il~~~~~aL~pgG~ 225 (228)
..-.+ +--+++++.+.+.|+|||.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 11100 1234778888889999974
No 91
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.94 E-value=5.6e-09 Score=81.13 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCCceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVPPADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p~~D~v~~~~v 200 (228)
..+..+++|||||+|..+.+++..+|..+++.+|. ++.++..+. .++++++.||.-+ ..|.+|.|++.-.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 56778999999999999999999999999999998 777766543 7899999999866 3446999999876
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
- ....+|+.+...|+|||
T Consensus 112 ~------~i~~ile~~~~~l~~gg 129 (187)
T COG2242 112 G------NIEEILEAAWERLKPGG 129 (187)
T ss_pred C------CHHHHHHHHHHHcCcCC
Confidence 2 22578999999999996
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=98.94 E-value=2.4e-09 Score=88.48 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=74.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC-C-CceEeeehhhhcCCChhHH
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFV-P-PADAFLFKLVFHGLGDEDG 209 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~-p-~~D~v~~~~vlh~~~d~~~ 209 (228)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+.+.. . .||+|+++-..+..+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 56999999999999999999888889999999 888887765 468999999998733 3 4999999888876554322
Q ss_pred ------------------HHHHHHHHHHhccCCCC
Q 038208 210 ------------------LKILKKRREAIASNGER 226 (228)
Q Consensus 210 ------------------~~il~~~~~aL~pgG~~ 226 (228)
.++++.+...|+|+|+.
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~ 179 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSA 179 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceE
Confidence 35667777888888753
No 93
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.92 E-value=3.1e-09 Score=86.00 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEeCCCCC-C--CC-CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----T-DNLKYIAGDMFQ-F--VP-PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~-~rv~~~~gD~~~-~--~p-~~D~v~~~~vl 201 (228)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++ . .++++...|+.+ + .+ .+|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 367999999999999999988654 5999999 777776653 2 268999998865 2 22 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+..+. ..+|+++.+.|+|||.
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGI 144 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcE
Confidence 998776 5799999999999974
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=98.92 E-value=7.5e-09 Score=81.29 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=71.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCCCC--CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDN-LKYIAGDMFQFVP--PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~r-v~~~~gD~~~~~p--~~D~v~~~~v 200 (228)
.+..+|||+|||+|.++..++++ ..+++++|+ |.+++.+++ .++ +.++.+|+.++++ .+|+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999998 678999999 788876643 222 8999999988655 4999998655
Q ss_pred hcCCC-------------------hhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLG-------------------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~-------------------d~~~~~il~~~~~aL~pgG~ 225 (228)
++... ......+++++.+.|+|||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 43211 12346689999999999974
No 95
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.91 E-value=6.6e-09 Score=84.07 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC--
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQ-FV-- 189 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~-~~-- 189 (228)
.+..+||+.|||.|.-+..|++. +.+++++|+ +..++.+. ...+|+++++|+|+ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999997 667999999 77776631 14689999999998 32
Q ss_pred ---CCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 190 ---PPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 ---p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+|+|+=+.+++.++++...+..+++.+.|+|||.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 249999999999999999999999999999999964
No 96
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.91 E-value=4.7e-09 Score=83.67 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-CCceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V-PPADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~-p~~D~v~~ 197 (228)
.....+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.+. . +.+|+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4567899999999999999998874 6789999999 888876653 36899999998652 2 35999988
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. ..++...+++.+.+.|+|||.
T Consensus 118 ~~-----~~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCCCcE
Confidence 43 223346789999999999974
No 97
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.91 E-value=3.9e-09 Score=95.37 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CceEeeehhh---
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--PADAFLFKLV--- 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~~D~v~~~~v--- 200 (228)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .++++++.+|+++.++ .||+|+++-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888887764 3589999999987554 4999998421
Q ss_pred -----------hcCCCh----------hHHHHHHHHHHHHhccCCC
Q 038208 201 -----------FHGLGD----------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 -----------lh~~~d----------~~~~~il~~~~~aL~pgG~ 225 (228)
+.+.|. +.-.++++++.+.|+|||.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 111111 2235678889999999974
No 98
>PLN02366 spermidine synthase
Probab=98.91 E-value=4.1e-09 Score=89.37 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=71.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC--CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP--PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p--~~D~ 194 (228)
.+++.+||+||||.|..+.++++..+..+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35688999999999999999987533457999999 778876654 4699999999754 333 4999
Q ss_pred eeehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
|++-..-+.-+.. -...+++.+++.|+|||+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGV 201 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 9874433222211 135789999999999985
No 99
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.91 E-value=7e-09 Score=84.57 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ-F--VP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~-~--~p-~~D~v~~~~vlh 202 (228)
+..+|||||||+|.++..+++. ..+++++|+ +..++.+++ ..+++++..|+.+ + .+ .||+|++.++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999886 467999999 677766553 3467888888755 2 22 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.++. ..+|+++.+.|+|||.
T Consensus 126 ~~~~~--~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 126 HVPDP--ASFVRACAKLVKPGGL 146 (233)
T ss_pred ccCCH--HHHHHHHHHHcCCCcE
Confidence 88765 5789999999999974
No 100
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.89 E-value=3.4e-09 Score=84.19 Aligned_cols=92 Identities=13% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCcH--HHH--HHHHH----CC-CCeEEEeec-hHHHhcCCC----------------------------
Q 038208 133 GLGSLVDVGGGNGS--FSR--IISEA----FP-GIKCTVLDL-PHVVANLPE---------------------------- 174 (228)
Q Consensus 133 ~~~~vlDvGgG~G~--~~~--~l~~~----~p-~~~~~~~Dl-p~~i~~a~~---------------------------- 174 (228)
+.-+|.-.||++|. ++. .+.+. .+ +.++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999997 333 33331 12 468999999 888887652
Q ss_pred ------CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 175 ------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 175 ------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
..+|+|..+|..+ +.+ .+|+|++++||-+++++...+++++++++|+|||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC
Confidence 3679999999998 322 4999999999999999999999999999999997
No 101
>PRK14967 putative methyltransferase; Provisional
Probab=98.89 E-value=7.2e-09 Score=84.11 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=69.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh 202 (228)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+.++ .||+|+++-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 345679999999999999998886 3358999999 777875553 3468899999977544 499999874322
Q ss_pred CCCh-------------------hHHHHHHHHHHHHhccCCC
Q 038208 203 GLGD-------------------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d-------------------~~~~~il~~~~~aL~pgG~ 225 (228)
.-++ +....+++++.+.|+|||.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 1111 1235688999999999974
No 102
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.89 E-value=6.6e-09 Score=85.85 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCC-----CceEeeehhhhc--
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQFVP-----PADAFLFKLVFH-- 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~~~p-----~~D~v~~~~vlh-- 202 (228)
..+|||+|||+|.++..+++..|..+++++|+ |.+++.+++ ..+++++.+|+++.++ .+|+|+++-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888887765 2346899999987432 499998764321
Q ss_pred ----CCChh------------------HHHHHHHHHHHHhccCCC
Q 038208 203 ----GLGDE------------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ----~~~d~------------------~~~~il~~~~~aL~pgG~ 225 (228)
..+++ ..+.+++.+.+.|+|||.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 11111 134788888899999974
No 103
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.88 E-value=6.8e-09 Score=87.51 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=66.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-CceEeeehhhhc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP-PADAFLFKLVFH 202 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p-~~D~v~~~~vlh 202 (228)
....+|||||||+|.++..+++. +..+++++|+ |.+++.+++ ..++.+...|.....+ .||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35689999999999999888865 4458999999 788877664 3567777776433223 59999986543
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+....+++++++.|+|||.
T Consensus 236 ----~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred ----HHHHHHHHHHHHHcCCCcE
Confidence 2346789999999999974
No 104
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.88 E-value=4.6e-09 Score=82.11 Aligned_cols=85 Identities=16% Similarity=0.288 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCC--ceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVPP--ADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p~--~D~v~~~~vlh~~ 204 (228)
.++..+|||+|||.|.++..+.+. .++++.++|+ ++-+..+. ...++++.+|+.+ .+|+ ||.|+++++|...
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 356799999999999999888885 5899999999 55444333 3568899999976 3663 9999999999988
Q ss_pred ChhHHHHHHHHHHHH
Q 038208 205 GDEDGLKILKKRREA 219 (228)
Q Consensus 205 ~d~~~~~il~~~~~a 219 (228)
..+ ..+|+++.+.
T Consensus 89 ~~P--~~vL~EmlRV 101 (193)
T PF07021_consen 89 RRP--DEVLEEMLRV 101 (193)
T ss_pred hHH--HHHHHHHHHh
Confidence 766 4567777655
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.87 E-value=8.7e-09 Score=81.42 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=68.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VP--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p--~~D~v~~~ 198 (228)
..+..+|||||||+|.++..+++++ +..+++++|+.+.. ..++++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4567899999999999999999987 66789999994332 246789999998652 23 39999985
Q ss_pred hhhc---CCCh------hHHHHHHHHHHHHhccCCC
Q 038208 199 LVFH---GLGD------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh---~~~d------~~~~~il~~~~~aL~pgG~ 225 (228)
...| .|.. +....+|+++++.|+|||.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 4322 1221 2246789999999999974
No 106
>PRK01581 speE spermidine synthase; Validated
Probab=98.85 E-value=5e-09 Score=89.82 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=72.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CC-Cc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQF---VP-PA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~---~p-~~ 192 (228)
..++.+||+||||+|..++++++..+..+++++|+ |.+++.|++ .+|++++.+|..+- .+ .|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45678999999999999999998656678999999 888887662 57999999999762 22 49
Q ss_pred eEeeehhhhc---CCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFH---GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh---~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++-..-. ....-....+++.+++.|+|||+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGA 263 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcE
Confidence 9999863210 01112236789999999999985
No 107
>PTZ00146 fibrillarin; Provisional
Probab=98.85 E-value=1.8e-08 Score=84.15 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=70.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PH----VVANLPETDNLKYIAGDMFQFV------PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~----~i~~a~~~~rv~~~~gD~~~~~------p~~D~v~~~ 198 (228)
+.+..+|||+|||+|.++..+++.. |.-+++++|+ +. +++.++...+|.++.+|+..+. +.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 4566899999999999999999986 4568999998 53 5566555688999999986532 248999776
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. .+++...++.++++.|||||.
T Consensus 210 va----~pdq~~il~~na~r~LKpGG~ 232 (293)
T PTZ00146 210 VA----QPDQARIVALNAQYFLKNGGH 232 (293)
T ss_pred CC----CcchHHHHHHHHHHhccCCCE
Confidence 63 233456677899999999974
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=1.8e-08 Score=79.80 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred hhhhhccCCCe-EEEecCCCcHHHHHHHHHCCCCeEEEeech-HHHhcCC------CCCCe-EEEeCCCCCC---CC---
Q 038208 126 ECKQIFEGLGS-LVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVVANLP------ETDNL-KYIAGDMFQF---VP--- 190 (228)
Q Consensus 126 ~~~~~~~~~~~-vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~------~~~rv-~~~~gD~~~~---~p--- 190 (228)
.+...++...+ ||+||+|||.++..+++++|+++..--|.+ .....++ ..+++ .-+.-|+.++ .+
T Consensus 17 vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 17 VLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred HHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc
Confidence 44333555554 999999999999999999999998877873 3222211 11221 1123344432 11
Q ss_pred -----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 -----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 -----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+|.|++.+++|..+-+.+..+++.+.+.|+|||.
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGL 136 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCE
Confidence 48999999999999999999999999999999974
No 109
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.85 E-value=1.6e-08 Score=81.41 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ..+++++.+|..+.++ .||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678999999999999988887753 7999998 788776653 3469999999877433 4999999876
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++++ .+.+.+.|+|||.
T Consensus 154 ~~~~--------~~~l~~~L~~gG~ 170 (212)
T PRK00312 154 APEI--------PRALLEQLKEGGI 170 (212)
T ss_pred chhh--------hHHHHHhcCCCcE
Confidence 6544 3557789999974
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.83 E-value=1.9e-08 Score=83.13 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=61.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVPPADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p~~D~v~~~~vlh 202 (228)
.....+|||||||+|.++..+++..+. +++++|+ |.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~-- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL-- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc--
Confidence 346789999999999999887776443 6999999 888887764 13344433332 5899987532
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+....+++++.+.|+|||.
T Consensus 189 ---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 189 ---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred ---HHHHHHHHHHHHHhcCCCcE
Confidence 23346789999999999974
No 111
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.82 E-value=1.1e-08 Score=85.52 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|.++- .+ .||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766778999999 788776653 36899999998652 23 499999
Q ss_pred ehhhhcCCChhH--HHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDED--GLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~~--~~~il~~~~~aL~pgG~ 225 (228)
+...-+.-+... ...+++++++.|+|||+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGI 181 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcE
Confidence 866533222222 46789999999999975
No 112
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.78 E-value=1.8e-08 Score=83.96 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=65.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhc------CC-CCCCeEEEeCCCCCCCC---CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVAN------LP-ETDNLKYIAGDMFQFVP---PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~------a~-~~~rv~~~~gD~~~~~p---~~D~v~~~~vl 201 (228)
..++|||||||+|.++..++++.|. .++++|- +....+ .- ...++.++..-+ +.+| .||+|++--||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccccCCcCEEEEeeeh
Confidence 5789999999999999999999654 5899995 322222 11 123344443222 2333 49999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|..++ ...|+++++.|+|||.
T Consensus 193 YHrr~P--l~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 193 YHRRSP--LDHLKQLKDSLRPGGE 214 (315)
T ss_pred hccCCH--HHHHHHHHHhhCCCCE
Confidence 999888 7899999999999974
No 113
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.78 E-value=9.3e-08 Score=79.26 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=95.5
Q ss_pred ChhhhcccCccHHHHHHHHHHhccchh----------HHHHHHHhhhhhc-cCCCeEEEecCCCcH----HHHHHHHHCC
Q 038208 92 KFWEFLNQNPGINQRFNEAMASDSEIM----------TSFVVKAECKQIF-EGLGSLVDVGGGNGS----FSRIISEAFP 156 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~f~~~m~~~~~~~----------~~~~~~~~~~~~~-~~~~~vlDvGgG~G~----~~~~l~~~~p 156 (228)
.++..+..+++..+.|-.+|..-...+ ...+++ .+-..- .+.-+|.-.||++|. .++.+.+..|
T Consensus 45 ~y~~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p-~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~ 123 (268)
T COG1352 45 EYLNLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLP-ELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALG 123 (268)
T ss_pred HHHHHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHH-HHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhc
Confidence 345566666666667777766433211 112222 111001 136789999999996 5566667776
Q ss_pred -----CCeEEEeec-hHHHhcCCC-----------------------------------CCCeEEEeCCCCCC--CC-Cc
Q 038208 157 -----GIKCTVLDL-PHVVANLPE-----------------------------------TDNLKYIAGDMFQF--VP-PA 192 (228)
Q Consensus 157 -----~~~~~~~Dl-p~~i~~a~~-----------------------------------~~rv~~~~gD~~~~--~p-~~ 192 (228)
..++++.|+ ..+++.|+. ...|.|..+|..++ .+ .+
T Consensus 124 ~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~f 203 (268)
T COG1352 124 KLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKF 203 (268)
T ss_pred cccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCC
Confidence 478999999 788877652 24599999999884 44 49
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|+|++||-+++.+...+|+++.+..|+|||.
T Consensus 204 D~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 204 DLIFCRNVLIYFDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred CEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCE
Confidence 999999999999999999999999999999974
No 114
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=1.7e-08 Score=91.63 Aligned_cols=93 Identities=17% Similarity=0.304 Sum_probs=71.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CC-Cc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQF---VP-PA 192 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~---~p-~~ 192 (228)
+++++|||||||+|..+.++++ +|. .+++++|+ |++++.+++ .+|++++.+|..+. .+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 5678999999999999999997 565 79999999 889987764 26899999998762 23 59
Q ss_pred eEeeehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
|+|++...-...+.. -...+++++++.|+|||+
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~ 410 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGL 410 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeE
Confidence 999887433221211 124689999999999975
No 115
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.77 E-value=1.7e-08 Score=81.59 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=77.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CCC-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------------------ETDNLKYIAGDMFQ-FVP- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------~~~rv~~~~gD~~~-~~p- 190 (228)
....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+. ...+|++.++|+|+ +..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 45679999999999999999997 678999999 77776541 04579999999998 322
Q ss_pred --CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 191 --PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|+=+..|+-++++.+.+-.+++.+.|+|||.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 49999999999999999999999999999999974
No 116
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.73 E-value=4.3e-08 Score=82.17 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=74.2
Q ss_pred CCeEEEecCCCcH--HHH--HHHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 038208 134 LGSLVDVGGGNGS--FSR--IISEAFP----GIKCTVLDL-PHVVANLPE------------------------------ 174 (228)
Q Consensus 134 ~~~vlDvGgG~G~--~~~--~l~~~~p----~~~~~~~Dl-p~~i~~a~~------------------------------ 174 (228)
.-+|...||++|. |++ .+.+..+ +.++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997 333 3444332 468999999 788876652
Q ss_pred -------CCCeEEEeCCCCC-CCC---CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 -------TDNLKYIAGDMFQ-FVP---PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 -------~~rv~~~~gD~~~-~~p---~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+|+|..+|..+ ++| .+|+|+++++|.+++++...+++++++++|+|||.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~ 257 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGL 257 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 2558999999988 444 49999999999999999999999999999999973
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=4.4e-08 Score=83.54 Aligned_cols=87 Identities=14% Similarity=0.273 Sum_probs=67.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV---PPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~---p~~D~v~~~~ 199 (228)
..+..+|||||||+|.++..+++..+. .+++++|+ +++++.+++ .++++++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 456689999999999999999998864 57999999 888776653 467999999987632 2499999876
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++..+ ..+.+.|+|||.
T Consensus 158 g~~~ip--------~~~~~~LkpgG~ 175 (322)
T PRK13943 158 GVDEVP--------ETWFTQLKEGGR 175 (322)
T ss_pred chHHhH--------HHHHHhcCCCCE
Confidence 554432 345678999974
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=1.8e-07 Score=76.50 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p~~ 192 (228)
..++++|||||||+|.-+..+++..| +.+++.+|+ |+.++.+++ .++|+++.+|..+. + +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45788999999999999999999865 689999999 777777664 57899999999762 1 249
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++- -..+.-...+..+.+.|+|||+
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeE
Confidence 999873 3334456789999999999975
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.5e-08 Score=83.65 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CceEeeehhhh--cC--
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-PADAFLFKLVF--HG-- 203 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-~~D~v~~~~vl--h~-- 203 (228)
+|||||||||..+..+++++|+.++++.|+ |..++.|++ ..++.++.+|++++++ .||+|+++=-. ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888887764 2667778889999776 59999765321 10
Q ss_pred -C----------------C--hhHHHHHHHHHHHHhccCCC
Q 038208 204 -L----------------G--DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 -~----------------~--d~~~~~il~~~~~aL~pgG~ 225 (228)
. . -+...+++..+.+.|+|||.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~ 233 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGV 233 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcE
Confidence 0 0 13456788888889999864
No 120
>PHA03412 putative methyltransferase; Provisional
Probab=98.66 E-value=8.3e-08 Score=77.76 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CceEeeehhhhcCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF---PGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLG 205 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~ 205 (228)
...+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++.+|+.. +.. .||+|+++=-.+...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 35799999999999999999875 4678999999 888888876 4679999999976 444 499999887766432
Q ss_pred h----------hHHHHHHHHHHHHhccCC
Q 038208 206 D----------EDGLKILKKRREAIASNG 224 (228)
Q Consensus 206 d----------~~~~~il~~~~~aL~pgG 224 (228)
. .-...+++++.+.++||+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 1 224568888888666663
No 121
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.66 E-value=1.4e-07 Score=81.04 Aligned_cols=93 Identities=18% Similarity=0.092 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~v 200 (228)
+.+..+|||+|||+|.++.+.+.. ..+++++|+ +.++..++. .+.+.++.+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456679999999999999887654 678999999 788876553 2448899999987 554 4999998533
Q ss_pred hcC-------CChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHG-------LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~-------~~d~~~~~il~~~~~aL~pgG~ 225 (228)
... ...+...++|+++++.|+|||.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 211 1223357899999999999974
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=1.8e-07 Score=83.16 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQF---VP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~---~p--~~D~v~~~~ 199 (228)
..+..+|||+|||+|..+..+++..++.+++++|+ +.+++.+++ .-+++++.+|..+. .+ .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 34568999999999999999999998889999999 888877654 23578999999762 22 399998422
Q ss_pred ------hhc-------CCChhH-------HHHHHHHHHHHhccCCC
Q 038208 200 ------VFH-------GLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 200 ------vlh-------~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
++. .+..++ ..++|+++.+.|+|||.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~ 367 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGT 367 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 111 122222 35799999999999974
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=1.8e-07 Score=83.56 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=71.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+|+++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 3456799999999999999999986 6789999999 777776653 24699999999762 34 49999864
Q ss_pred hh------hc-------CCChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 LV------FH-------GLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~v------lh-------~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
-. +. .++.++ ...+|+++.+.|+|||.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 21 11 122222 25689999999999974
No 124
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.62 E-value=3.7e-08 Score=78.47 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC-eEEEeCCCCC--CCC-CceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDN-LKYIAGDMFQ--FVP-PADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~r-v~~~~gD~~~--~~p-~~D~v~~~~vlh 202 (228)
+..+.||.|+|.|..+..++-.+ --++-++|. +..++.|++ ..+ .++.+..+.+ |.+ .||+|++-|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999877543 124777776 788887763 223 5566665544 433 499999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++|++...+|+++.++|+|||.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~ 156 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGV 156 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcE
Confidence 99999999999999999999974
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.62 E-value=1.5e-07 Score=73.09 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=59.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC--ceEeeehhhhc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFH 202 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh 202 (228)
..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. +|.++.+-..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py- 87 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY- 87 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-
Confidence 456679999999999999999998 568999999 777776653 4689999999988 5553 7888765444
Q ss_pred CCChhHHHHHH
Q 038208 203 GLGDEDGLKIL 213 (228)
Q Consensus 203 ~~~d~~~~~il 213 (228)
+...+...+++
T Consensus 88 ~~~~~~i~~~l 98 (169)
T smart00650 88 NISTPILFKLL 98 (169)
T ss_pred ccHHHHHHHHH
Confidence 34444333333
No 126
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=9.1e-08 Score=75.22 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=67.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEeCCCCC-C-CC--CceEeeehh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLK-YIAGDMFQ-F-VP--PADAFLFKL 199 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~-~~~gD~~~-~-~p--~~D~v~~~~ 199 (228)
+....||+||||+|..-... .--|..++|.+|- |.+.+.+.+ ...+. |+.++..+ + ++ .+|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 34567899999999865431 1124678999997 666554432 56677 88888866 3 44 499999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|+...|. .+.|+++.+.|+|||.
T Consensus 154 vLCSve~~--~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRPGGR 177 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCCCcE
Confidence 99877655 8999999999999974
No 127
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.59 E-value=5e-08 Score=75.24 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-CceEeeehhhhc
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF--VP-PADAFLFKLVFH 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~--~p-~~D~v~~~~vlh 202 (228)
..+|||+|||+|+++..|++.--.-+.+++|. +..++.|+. .+.|+|+..|+++| .+ .||+|+=+-++-
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999999865666899998 777766542 45599999999985 33 499997666553
Q ss_pred C------CChhHHHHHHHHHHHHhccCCC
Q 038208 203 G------LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~------~~d~~~~~il~~~~~aL~pgG~ 225 (228)
- -++.....-+..+.+.|+|||+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gi 176 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGI 176 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcE
Confidence 2 2222223447788888999974
No 128
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.58 E-value=1.6e-07 Score=75.49 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=65.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC--CCC----C-C--C-CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGD--MFQ----F-V--P-PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD--~~~----~-~--p-~~D~v~~~~v 200 (228)
...+.++|||||+|..++.++..+. ++++.|. +.+++.+++..+++...-- |.+ + . + ..|+|++.++
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445999999999977777777654 4899999 8999999885555544332 221 1 1 2 3899999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+|.+.-+ ++++.+++.|++.|
T Consensus 110 ~HWFdle---~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 110 VHWFDLE---RFYKEAYRVLRKDG 130 (261)
T ss_pred HHhhchH---HHHHHHHHHcCCCC
Confidence 9977654 78999999998876
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=2.5e-07 Score=82.58 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=70.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CceEeeeh---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP--PADAFLFK--- 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p--~~D~v~~~--- 198 (228)
....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+..+ .||+|++-
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 3567999999999999999888764 468999999 888877654 3579999999977323 49999851
Q ss_pred ---hhh-------cCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 199 ---LVF-------HGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ---~vl-------h~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
.++ +.+++++ -.++|+++.+.|+|||.
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 111 2233332 24699999999999974
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.57 E-value=2.2e-07 Score=82.52 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--C--CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FV--P--PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~--p--~~D~v~~ 197 (228)
..+..+|||+|||+|..+..+++..++.+++++|+ +..++.+++ ..+++++.+|... +. + .||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 44568999999999999999999988889999999 777776653 2234557788765 22 2 4999985
Q ss_pred h------hhhcCCCh-------h-------HHHHHHHHHHHHhccCCC
Q 038208 198 K------LVFHGLGD-------E-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~------~vlh~~~d-------~-------~~~~il~~~~~aL~pgG~ 225 (228)
- .+++..|+ + ...++|+++.+.|||||.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2 34554443 1 136899999999999974
No 131
>PLN02672 methionine S-methyltransferase
Probab=98.57 E-value=1.7e-07 Score=90.47 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=54.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEeCCCCCCCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------------TDNLKYIAGDMFQFVP 190 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------------~~rv~~~~gD~~~~~p 190 (228)
..+|||||||+|..+..+++++|+.+++++|+ |.+++.+++ .+||+++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999999999999 888876632 1489999999988543
Q ss_pred ----CceEeeeh
Q 038208 191 ----PADAFLFK 198 (228)
Q Consensus 191 ----~~D~v~~~ 198 (228)
.+|+|+.+
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 38998765
No 132
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.56 E-value=3.4e-07 Score=76.03 Aligned_cols=74 Identities=18% Similarity=0.378 Sum_probs=58.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPPADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~~ 204 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.|+.+-.. ++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy-~i 103 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY-QI 103 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc-cc
Confidence 4567899999999999999999984 57999999 777776653 4689999999988 67778988775554 44
Q ss_pred Chh
Q 038208 205 GDE 207 (228)
Q Consensus 205 ~d~ 207 (228)
+.+
T Consensus 104 ~s~ 106 (258)
T PRK14896 104 SSP 106 (258)
T ss_pred CcH
Confidence 433
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.55 E-value=1.4e-07 Score=75.80 Aligned_cols=93 Identities=15% Similarity=0.299 Sum_probs=67.5
Q ss_pred HHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--
Q 038208 121 FVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP-- 190 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p-- 190 (228)
.+++ .++ +.+..+|||||||+|.++..+++.. +..+++.+|. |..++.|++ ..+|+++.+|....++
T Consensus 63 ~~l~-~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 63 RMLE-ALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHH-HTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHH-HHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 3445 454 6778899999999999999999875 5567999998 888887764 5689999999877444
Q ss_pred -CceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 191 -PADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 191 -~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.||.|++.......|. ...+.|++||
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gG 166 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGG 166 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCc
Confidence 4999999887755443 3556688886
No 134
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.54 E-value=4.3e-07 Score=75.14 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC------CCCceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF------VPPADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~------~p~~D~v 195 (228)
..+.+||||.||+|.+...+++.+|. .++.+.|. |.-++..++ .+-++|..+|.|.. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35789999999999999999999998 78999999 766665443 44559999999882 2458999
Q ss_pred eehhhhcCCChhH-HHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDED-GLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~-~~~il~~~~~aL~pgG~ 225 (228)
+.+-+.-.++|.+ ....|+.+++++.|||.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcE
Confidence 9999999999966 55579999999999974
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.54 E-value=2.6e-07 Score=73.43 Aligned_cols=91 Identities=18% Similarity=0.319 Sum_probs=64.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCC----CC--CceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP------ETDNLKYIAGDMFQF----VP--PADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------~~~rv~~~~gD~~~~----~p--~~D~v~~~~v 200 (228)
...+||||||.|.++..+++++|+..++++|+ ...+..+. ...++.++++|...- ++ ..|-|++.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34999999999999999999999999999999 55554443 278999999998761 33 3566655433
Q ss_pred hcCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
== |+.. -...+|+.+++.|+|||.
T Consensus 98 DP-WpK~rH~krRl~~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 98 DP-WPKKRHHKRRLVNPEFLELLARVLKPGGE 128 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEE
T ss_pred CC-CcccchhhhhcCCchHHHHHHHHcCCCCE
Confidence 21 3321 125689999999999974
No 136
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.6e-07 Score=76.51 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=65.3
Q ss_pred hhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEeCCCCC-CC-CCceEe
Q 038208 126 ECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLK----YIAGDMFQ-FV-PPADAF 195 (228)
Q Consensus 126 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~----~~~gD~~~-~~-p~~D~v 195 (228)
.+.....+..+|+|||||||.++++.++.. ..+++++|+ |..++.+++ ...|. ....+..+ +. ..||+|
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvI 233 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVI 233 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEE
Confidence 333334588999999999999999999874 346999999 888877765 23333 22223322 22 249999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+= | . +-...+...+++.++|||.
T Consensus 234 VANI-L---A-~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 234 VANI-L---A-EVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred Eehh-h---H-HHHHHHHHHHHHHcCCCce
Confidence 8754 3 2 2346889999999999974
No 137
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.52 E-value=3e-07 Score=76.93 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=55.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCCc--eEeeehhhhcC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGDMFQ-FVPPA--DAFLFKLVFHG 203 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD~~~-~~p~~--D~v~~~~vlh~ 203 (228)
.....+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++.+|+.+ +++.. |.++. +.-++
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~-NlPY~ 116 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVA-NLPYN 116 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEE-eCCcc
Confidence 45667999999999999999999976 7999999 888887654 3689999999987 44443 44443 34444
Q ss_pred CC
Q 038208 204 LG 205 (228)
Q Consensus 204 ~~ 205 (228)
.+
T Consensus 117 is 118 (272)
T PRK00274 117 IT 118 (272)
T ss_pred ch
Confidence 44
No 138
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.52 E-value=2.7e-07 Score=77.70 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=60.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC--CCceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV--PPADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~--p~~D~v~~~~vl 201 (228)
.+..+|||||||||.+++..++... .+++++|+ |..++.+++ .+++.+. . ..+. ..||+|+.+-.-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 4568999999999999999998743 47999999 887877664 4566553 1 1222 359999865433
Q ss_pred cCCChhHHHHHHHHHHHHhccCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG 224 (228)
+....++..+.+.|+|||
T Consensus 236 -----~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGG 253 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCC
Confidence 334678888999999996
No 139
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.51 E-value=3.2e-07 Score=75.91 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=62.1
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCce
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPPAD 193 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~~D 193 (228)
..+++ .++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.++. .++++++.+|+.+ +++.+|
T Consensus 19 ~~i~~-~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 19 QKIVE-AAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHH-hcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 33444 443 456789999999999999999999864 888998 777766653 4789999999988 555555
Q ss_pred --EeeehhhhcCCChhHHHHHH
Q 038208 194 --AFLFKLVFHGLGDEDGLKIL 213 (228)
Q Consensus 194 --~v~~~~vlh~~~d~~~~~il 213 (228)
.+++.+.-++++.+-..+++
T Consensus 94 ~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 94 KQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred CcceEEEcCChhhHHHHHHHHh
Confidence 34444444445544333333
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.49 E-value=6.3e-07 Score=74.65 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCCceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VPPADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p~~D~v~~~~ 199 (228)
..+..+|||+|||+|..+..+++... ..+++++|+ +..++.+++ ..+|+++..|... + .+.||.|++--
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 34567999999999999999999875 468999999 777776653 3578999999754 2 23599998621
Q ss_pred ------hh-------cCCChhHH-------HHHHHHHHHHhccCCC
Q 038208 200 ------VF-------HGLGDEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 200 ------vl-------h~~~d~~~-------~~il~~~~~aL~pgG~ 225 (228)
++ ..|.+++. .++|+++.+.|||||.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 194 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV 194 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 11 12343322 5699999999999974
No 141
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=6.3e-07 Score=79.66 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F--VP-PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~--~p-~~D~v~~~ 198 (228)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|..+ + .+ .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4556799999999999999999986 5679999999 888877654 3468999999865 2 22 49999862
Q ss_pred ------hhhc-------CCChh-------HHHHHHHHHHHHhccCCC
Q 038208 199 ------LVFH-------GLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ------~vlh-------~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
.++. .++.+ .-.++|.++.+.|+|||.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 1122 22221 236789999999999975
No 142
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.49 E-value=3.9e-07 Score=78.04 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCCC-----CC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------------TDNLKYIAGDMFQF-----VP 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------------~~rv~~~~gD~~~~-----~p 190 (228)
+..+|||+|||-|.-+.-..+.. -..++++|+ +..|++|++ .-...|+.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999888777666652 346899999 677776653 12467788888752 22
Q ss_pred ----CceEeeehhhhcCC--ChhHHHHHHHHHHHHhccCCC
Q 038208 191 ----PADAFLFKLVFHGL--GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ----~~D~v~~~~vlh~~--~d~~~~~il~~~~~aL~pgG~ 225 (228)
.||+|-+-..||+. +.+.++.+|+++.+.|+|||.
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCE
Confidence 49999999999983 577888899999999999974
No 143
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=6.5e-07 Score=79.72 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C----C-C-CceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-F----V-P-PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~----~-p-~~D~v 195 (228)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+|+++++|..+ + . + .||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 3456899999999999999999986 4568999999 778876653 3579999999876 2 1 1 49999
Q ss_pred eeh------hhhcCCCh-------hH-------HHHHHHHHHHHhccCCC
Q 038208 196 LFK------LVFHGLGD-------ED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~------~vlh~~~d-------~~-------~~~il~~~~~aL~pgG~ 225 (228)
++- .+++..++ ++ ..++|+++.+.|||||.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 862 24443333 22 36899999999999974
No 144
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.47 E-value=3.9e-07 Score=76.24 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---FVP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~~p-~~D~v~ 196 (228)
+++++||-||+|.|..++++++..+.-+++.+|+ |.+++.+++ .+|++++.+|-.+ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4567999999999999999999988889999999 899988774 4899999999876 344 499998
Q ss_pred ehhhhcCCChh---HHHHHHHHHHHHhccCCC
Q 038208 197 FKLVFHGLGDE---DGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~d~---~~~~il~~~~~aL~pgG~ 225 (228)
+-..=.. .+. -...+++.++++|+|+|+
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGI 185 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcE
Confidence 7553321 110 125789999999999986
No 145
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.2e-06 Score=69.56 Aligned_cols=85 Identities=12% Similarity=0.237 Sum_probs=68.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
+....+||+||||+|..+.-+++.-- +++.+|+ +...+.|++ ..+|.+.++|-..-+| .||.|+..-.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeec
Confidence 67889999999999999999998754 7888998 788877764 4579999999988544 4999998887
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.-..|+ .+.+.|+|||.
T Consensus 148 a~~vP~--------~Ll~QL~~gGr 164 (209)
T COG2518 148 APEVPE--------ALLDQLKPGGR 164 (209)
T ss_pred cCCCCH--------HHHHhcccCCE
Confidence 766664 35677899964
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.46 E-value=2.8e-07 Score=73.18 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--CC-C-ceEeeehhhhcC---
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQF--VP-P-ADAFLFKLVFHG--- 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~--~p-~-~D~v~~~~vlh~--- 203 (228)
....|||||||+|..+..+... ....+++|+ |+|++.+.+ .-.-.++-+|+-+. ++ + ||-+++...+..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 3789999999999988887764 578999999 999998875 11145778888874 33 3 998876655532
Q ss_pred ------CChhHHHHHHHHHHHHhccCC
Q 038208 204 ------LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ------~~d~~~~~il~~~~~aL~pgG 224 (228)
.|......++..++.+|++|+
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGA 154 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCc
Confidence 122344566788999999984
No 147
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.3e-06 Score=71.11 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=83.9
Q ss_pred HHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------
Q 038208 108 NEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISE-AFPGIKCTVLDL-PHVVANLPE------- 174 (228)
Q Consensus 108 ~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~Dl-p~~i~~a~~------- 174 (228)
...|...++.. +..++. ... .+...+|+|.|-|+|.++..|++ -.|..+++.+|+ ++..+.|++
T Consensus 68 ~~~~~R~tQiIyPKD~~~I~~-~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 68 LLSMKRRTQIIYPKDAGYIVA-RLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHhCcCCCceecCCCHHHHHH-HcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc
Confidence 33355544432 334444 444 77899999999999999999997 568899999998 777777764
Q ss_pred CCCeEEEeCCCCCC-CC-CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 TDNLKYIAGDMFQF-VP-PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ~~rv~~~~gD~~~~-~p-~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|++..+|+.+. .+ .+|++++ |.|++ -..+.++.++|+|||.
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~ 190 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKPGGV 190 (256)
T ss_pred ccceEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCCCcE
Confidence 57799999999883 33 5898876 78877 6789999999999975
No 148
>PLN02823 spermine synthase
Probab=98.42 E-value=4.4e-07 Score=77.84 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=70.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CC-CceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQF---VP-PADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~---~p-~~D~v~ 196 (228)
+++++||.||||.|..++++++..+..+++++|+ |.+++.+++ .+|++++.+|.++- .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4678999999999999999998766778999999 888887763 47999999998762 22 499998
Q ss_pred ehhhhcCCC--hh---HHHHHHH-HHHHHhccCCC
Q 038208 197 FKLVFHGLG--DE---DGLKILK-KRREAIASNGE 225 (228)
Q Consensus 197 ~~~vlh~~~--d~---~~~~il~-~~~~aL~pgG~ 225 (228)
+--. ..+. .. -...+++ .+++.|+|||+
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 7521 1110 00 1245777 89999999985
No 149
>PRK00536 speE spermidine synthase; Provisional
Probab=98.41 E-value=8.5e-07 Score=73.37 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=66.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCC-CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQFV-PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~~~-p~~D~v~~~ 198 (228)
.+++++||=||||.|..++++++. |. +++.+|+ +.|++.+++ .+|++++.. +.+.. ..||+|++=
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 467899999999999999999996 55 9999999 788877664 689999862 32222 359999865
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. .+ ....+.++++|+|||+
T Consensus 147 s~----~~---~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKEDGV 166 (262)
T ss_pred CC----CC---hHHHHHHHHhcCCCcE
Confidence 42 22 4678999999999985
No 150
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.41 E-value=7.2e-07 Score=79.39 Aligned_cols=125 Identities=21% Similarity=0.297 Sum_probs=79.3
Q ss_pred hhhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhh--ccCCCeEEEecCCCcHHHHHHHHHC----CCCeEEEeec-
Q 038208 93 FWEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQI--FEGLGSLVDVGGGNGSFSRIISEAF----PGIKCTVLDL- 165 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~Dl- 165 (228)
-|+-+++|+...+.|.+++.. .+.+..... -.+...|+|||||+|-++...+++. -..++.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~--------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE--------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH--------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH--------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 467777888877778777522 122011100 0135789999999999987766653 4578999997
Q ss_pred hHHHhcC----C--C-CCCeEEEeCCCCC-CCCC-ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 166 PHVVANL----P--E-TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 166 p~~i~~a----~--~-~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|..+... + . .++|+++.+|+.+ ..|. +|+++.-..=.....|-....|....+-|||||+
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCE
Confidence 5433221 1 1 6899999999988 6774 9999876665434445556678888889999964
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.40 E-value=4.9e-07 Score=70.55 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=63.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------C-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE---------TDNLKYIAGDMFQFV------P-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~---------~~rv~~~~gD~~~~~------p-~~D~ 194 (228)
.....+||++|||+|..++.+++..+..++++-|.+++++..+. ..++++...|+.++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999999877888999999767664432 467899998886632 2 4999
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+.+.++|+ ++....+++-+.+.|+|+|.
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TT
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCE
Confidence 999999975 57778999999999999864
No 152
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.39 E-value=3.2e-07 Score=70.67 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=52.3
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 161 TVLDL-PHVVANLPE---------TDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 161 ~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+++|. +++++.+++ ..+|+++.+|+.+ ++++ ||+|++..++|+++|. .+.|++++++|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeE
Confidence 46888 888887642 2479999999977 6653 9999999999999765 6899999999999974
No 153
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.38 E-value=2.1e-06 Score=65.45 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=79.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C-----CC--CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQ-F-----VP--PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~-~-----~p--~~D~v~~~~ 199 (228)
+....-|+++|.|+|.++.+|+++. ++-..+.++. ++......+ -+.++++.||.+. . .+ .+|.|++.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 5566789999999999999999975 6667888887 777766654 6778899999876 2 33 399999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-+-.+|.....+||.++..-|++||.
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~ 151 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGP 151 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999964
No 154
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.38 E-value=1.3e-06 Score=73.80 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=61.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeehhhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFKLVF 201 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~~vl 201 (228)
..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|+++. +.-
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~Vva-NlP 110 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVA-NVP 110 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEe-cCC
Confidence 4566899999999999999999974 46899999 777776653 4689999999987 6667887765 455
Q ss_pred cCCChhHHHHHH
Q 038208 202 HGLGDEDGLKIL 213 (228)
Q Consensus 202 h~~~d~~~~~il 213 (228)
++++.+...++|
T Consensus 111 Y~Istpil~~ll 122 (294)
T PTZ00338 111 YQISSPLVFKLL 122 (294)
T ss_pred cccCcHHHHHHH
Confidence 556665555555
No 155
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=1e-06 Score=70.54 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=60.2
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCCC
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---------------TDNLKYIAGDM 185 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------------~~rv~~~~gD~ 185 (228)
+++ .+. +.+...++|||||.|......+-.++--+++++++ |...+.+.. ..++++..+||
T Consensus 34 il~-~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 34 ILD-ELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHH-HTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHH-HhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 344 444 56678999999999999998887776556999998 655543321 56799999999
Q ss_pred CC-C-----CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 186 FQ-F-----VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 186 ~~-~-----~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.+ + +.++|+|++++.+ |+++...++ ++....||||
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G 151 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPG 151 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCC
Confidence 87 3 2469999999986 676655555 6777788887
No 156
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.34 E-value=5.4e-07 Score=74.22 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CC-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----------TDNLKYIAGDMFQ---F-VP-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----------~~rv~~~~gD~~~---~-~p-~~D~ 194 (228)
.+++++||=||+|.|..+.++++..+..+++++|+ |.+++.+++ .+|++++.+|... . .. .||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 35789999999999999999998766778999999 888887764 4799999999865 2 23 5999
Q ss_pred eeehhhhcCCChh--HHHHHHHHHHHHhccCCC
Q 038208 195 FLFKLVFHGLGDE--DGLKILKKRREAIASNGE 225 (228)
Q Consensus 195 v~~~~vlh~~~d~--~~~~il~~~~~aL~pgG~ 225 (228)
|++-..=-..+.. -...+++.+++.|+|||+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv 186 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGV 186 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcE
Confidence 9863332111211 136789999999999985
No 157
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=73.33 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=72.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCC-----C----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TD----NLKYIAGDMFQF-----V---- 189 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~----rv~~~~gD~~~~-----~---- 189 (228)
+....++|+|||-|.-++..-++. =-.+++.|+ .-.|.++++ .. .+.|+++|-+.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 567889999999999888776652 125899999 556777664 12 378999998751 2
Q ss_pred CCceEeeehhhhcC-C-ChhHHHHHHHHHHHHhccCCC
Q 038208 190 PPADAFLFKLVFHG-L-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p~~D~v~~~~vlh~-~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
|.||+|-+-+++|+ | +.+.++.+|+++.+.|+|||+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 24999999999997 4 567888899999999999985
No 158
>PRK04148 hypothetical protein; Provisional
Probab=98.31 E-value=4.4e-06 Score=61.99 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCeEEEecCCCcH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CceEeeehhhhcCCCh
Q 038208 133 GLGSLVDVGGGNGS-FSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP----PADAFLFKLVFHGLGD 206 (228)
Q Consensus 133 ~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p----~~D~v~~~~vlh~~~d 206 (228)
+..+++|||||+|. .+..+.+. +.+++++|+ |..++.+++ ..++++.+|+|++-+ ++|+|+..+ |+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 45789999999996 77777765 678999999 888877764 468999999999533 599998865 33
Q ss_pred hHHHHHHHHHHHHh
Q 038208 207 EDGLKILKKRREAI 220 (228)
Q Consensus 207 ~~~~~il~~~~~aL 220 (228)
.+...-+.++++..
T Consensus 88 ~el~~~~~~la~~~ 101 (134)
T PRK04148 88 RDLQPFILELAKKI 101 (134)
T ss_pred HHHHHHHHHHHHHc
Confidence 44445555555443
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.30 E-value=2.7e-07 Score=73.70 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccchhHHHHHHHhhhhh-ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC-eE
Q 038208 103 INQRFNEAMASDSEIMTSFVVKAECKQI-FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDN-LK 179 (228)
Q Consensus 103 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~r-v~ 179 (228)
..++|....-..-....+..+...+... .....++||+|||||..+..|...- -+.+++|+ ..|++.+.+..- =+
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~ 171 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDT 171 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHH
Confidence 3456665554333333344443122211 2337899999999999999888763 35789999 788888875111 11
Q ss_pred EEeC---CCCC--CCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 180 YIAG---DMFQ--FVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 180 ~~~g---D~~~--~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+... +|.. ....+|+|....||-++.+- ..++--+...|+|||-
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGl 220 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAPGGL 220 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCCCce
Confidence 1112 2433 22349999999999988765 5789999999999974
No 160
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.30 E-value=5.3e-07 Score=72.17 Aligned_cols=90 Identities=19% Similarity=0.303 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC---------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV---------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~---------p~~ 192 (228)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .++|+++.+|..+.+ ..|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45789999999999999999999987 589999999 777776654 579999999986521 249
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++-. ...+-...+..+.+.|+|||+
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEE
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeE
Confidence 9998754 445557888999999999975
No 161
>PLN02476 O-methyltransferase
Probab=98.27 E-value=3.4e-06 Score=70.40 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=73.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V------PPA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~------p~~ 192 (228)
..++++|||||+++|..+..+++..| +.+++.+|. |+..+.|++ .++|+++.||..+. + ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45789999999999999999999875 668999999 777776654 57999999998662 2 248
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|+|++- -+..+-...+..+.+.|+|||+
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcE
Confidence 988874 3455668889999999999985
No 162
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.27 E-value=3.2e-06 Score=71.15 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCC-ceEeeehhhhcCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVPP-ADAFLFKLVFHGL 204 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p~-~D~v~~~~vlh~~ 204 (228)
.+.|||||||+|.++.-.+++. ..++..++-.+|.+-|++ .+||+++.|-+.+ ++|+ +|+++.--.-+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 5789999999999998888774 346888888777776654 7899999999988 8896 9999876555555
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
-.|....-.-.+++.|+|+|.
T Consensus 257 ~NERMLEsYl~Ark~l~P~Gk 277 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGK 277 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCc
Confidence 555555555667799999974
No 163
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=2e-06 Score=70.85 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=74.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCCC-
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLG- 205 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~- 205 (228)
.+....++|+|||.|.++.- +|.+-.+++|+ -..+..++..+.......|+.+ |.+ .+|..+...++|+|+
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 34578999999999998754 58889999999 6677777654444677789887 655 499999999999997
Q ss_pred hhHHHHHHHHHHHHhccCCC
Q 038208 206 DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG~ 225 (228)
.+...+++++..+.++|||-
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~ 138 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGN 138 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 45667899999999999974
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.25 E-value=2.3e-06 Score=68.16 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=52.9
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C-CceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQFV---P-PADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~~---p-~~D~v~~~~vl 201 (228)
...+|||+|||+|.++.+++.+.. .+++.+|. +..++.+++ .++++++.+|+++.+ . .||+|++.=..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999998766653 68999999 777776653 357999999997632 2 39999876654
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.24 E-value=2.8e-06 Score=68.96 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC-CC----C-CCeEEEeCCCCC---CC-C--CceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL-PE----T-DNLKYIAGDMFQ---FV-P--PADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-~~----~-~rv~~~~gD~~~---~~-p--~~D~v~~~~v 200 (228)
...+||||||.|.++..+++++|+.-++++++ ..++..+ ++ . .++.++++|..+ .+ + +.|-|++.+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 36899999999999999999999999999998 4444333 21 3 399999999866 22 3 2555554432
Q ss_pred hcCCChhH-------HHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDED-------GLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~-------~~~il~~~~~aL~pgG~ 225 (228)
= -|+... ...+|+.+.+.|+|||.
T Consensus 129 D-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~ 159 (227)
T COG0220 129 D-PWPKKRHHKRRLTQPEFLKLYARKLKPGGV 159 (227)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHccCCCE
Confidence 1 133221 24679999999999975
No 166
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.24 E-value=1.7e-06 Score=77.21 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=60.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----CC--CceEeee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF-----VP--PADAFLF 197 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~-----~p--~~D~v~~ 197 (228)
.+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+. ++ .||+|++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 456799999999999999999885 58999999 888887764 35799999998652 22 3899876
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
. -|-.....+++.+.+ ++|++
T Consensus 374 d-----PPr~g~~~~~~~l~~-~~~~~ 394 (443)
T PRK13168 374 D-----PPRAGAAEVMQALAK-LGPKR 394 (443)
T ss_pred C-----cCCcChHHHHHHHHh-cCCCe
Confidence 3 222222334444443 56654
No 167
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.19 E-value=6.6e-06 Score=66.19 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=74.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEe-CCCCC--C---CCCceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIA-GDMFQ--F---VPPADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~-gD~~~--~---~p~~D~v 195 (228)
.++++++|+||.+.|.-+..++...| +.+++.+|+ |+.++.|++ .++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 888888774 67788888 58765 2 2359999
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++ |-...+-...|..+.+.|+|||+
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLRPGGL 161 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhCCCcE
Confidence 87 34444557889999999999986
No 168
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=5.7e-06 Score=64.44 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
..++|+|+|||+|.++...+-..| .+++++|+ |+.++.++. ..+|.|++.|....-..+|.++++=.+--|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 567899999999999998877654 47999999 888887765 568999999997644457777776655444
No 169
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.10 E-value=1.2e-05 Score=66.26 Aligned_cols=92 Identities=24% Similarity=0.399 Sum_probs=59.9
Q ss_pred CCCeEEEecCCCcH--HHHHHHHH-CCCCeEEEeec-hHHHhcCCC----CCC--eEEEeCCCCCC---C--C-------
Q 038208 133 GLGSLVDVGGGNGS--FSRIISEA-FPGIKCTVLDL-PHVVANLPE----TDN--LKYIAGDMFQF---V--P------- 190 (228)
Q Consensus 133 ~~~~vlDvGgG~G~--~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~----~~r--v~~~~gD~~~~---~--p------- 190 (228)
+...+||||||-=. ...+++++ .|+.+++-+|. |-++..++. .++ ..++.+|+.++ + |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999543 56667664 69999999999 888887764 344 89999999874 1 2
Q ss_pred --CceEeeehhhhcCCCh-hHHHHHHHHHHHHhccCC
Q 038208 191 --PADAFLFKLVFHGLGD-EDGLKILKKRREAIASNG 224 (228)
Q Consensus 191 --~~D~v~~~~vlh~~~d-~~~~~il~~~~~aL~pgG 224 (228)
..=.+++..+||+.+| ++...+++.++++|.||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS 184 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc
Confidence 1346789999999987 788999999999999984
No 170
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.07 E-value=6.8e-06 Score=69.66 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=70.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vl 201 (228)
-+.++|||||||+|.++..-+++. ..+++++|-.++++.+.+ .+.|+++.|.+.+ .+| ..|+|+.-|.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 357899999999999999999987 668999998777766653 5679999998877 566 49999888776
Q ss_pred cCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
+..- +.....+|-.==+.|+|||.
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCce
Confidence 6543 33333444444567889875
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.06 E-value=1.4e-05 Score=68.18 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=57.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEe----CCCCCCC--C--CceEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIA----GDMFQFV--P--PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~----gD~~~~~--p--~~D~v 195 (228)
...++||||||+|.....++.+.++.+++++|+ |..++.|++ .++|++.. .++++.+ + .||++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999988998999999999999 888877764 35787754 2344422 2 49999
Q ss_pred eehhhhcCCChh
Q 038208 196 LFKLVFHGLGDE 207 (228)
Q Consensus 196 ~~~~vlh~~~d~ 207 (228)
+++=-+|.-.++
T Consensus 194 vcNPPf~~s~~e 205 (321)
T PRK11727 194 LCNPPFHASAAE 205 (321)
T ss_pred EeCCCCcCcchh
Confidence 999988865544
No 172
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.06 E-value=1.7e-05 Score=64.96 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-CceEeeehhhhcCCChhHHH
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP-PADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~~d~~~~ 210 (228)
+..++||||.|.|..+..++..+.+ +.+-+. +.|....++ ..++++..|=....+ .||+|.+.++|---.++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998877 555677 666655543 445555443333223 59999999999655555 7
Q ss_pred HHHHHHHHHhccCCC
Q 038208 211 KILKKRREAIASNGE 225 (228)
Q Consensus 211 ~il~~~~~aL~pgG~ 225 (228)
.+|+.++++|+|+|.
T Consensus 169 ~LL~~i~~~l~p~G~ 183 (265)
T PF05219_consen 169 TLLRDIRRALKPNGR 183 (265)
T ss_pred HHHHHHHHHhCCCCE
Confidence 899999999999964
No 173
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.05 E-value=2.8e-05 Score=61.77 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=65.9
Q ss_pred hhhhcccCccHHHHHHHHHHhcc----chhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHH
Q 038208 93 FWEFLNQNPGINQRFNEAMASDS----EIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHV 168 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 168 (228)
-++.+.++|+....|+..-+... ......+++ .+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~-~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~ 104 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIE-WLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP 104 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHH-HHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC
Confidence 34566778877666666554332 223344454 332 124457899999999999966542 357899998221
Q ss_pred HhcCCCCCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 169 VANLPETDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 169 i~~a~~~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++ +...|+.+ |++. .|+++++-.|-.-+ -...++++.+.|||||.
T Consensus 105 ------n~~--Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 105 ------NPR--VTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGI 153 (219)
T ss_dssp ------STT--EEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEE
T ss_pred ------CCC--EEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcE
Confidence 233 56689966 7763 89999888774321 25789999999999973
No 174
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.05 E-value=9.4e-06 Score=71.32 Aligned_cols=93 Identities=9% Similarity=0.040 Sum_probs=66.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---C---C-CceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T-DNLKYIAGDMFQF---V---P-PADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~-~rv~~~~gD~~~~---~---p-~~D~v 195 (228)
.+..+|||+|||+|.++...+.. ...+++.+|+ +.+++.+++ . ++++++.+|+++. + . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45689999999999998876643 3458999999 888877664 2 4799999999872 1 2 49999
Q ss_pred eehhhhcCCCh-------hHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGD-------EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d-------~~~~~il~~~~~aL~pgG~ 225 (228)
++.-.--.-+. ..-..+++.+.+.|+|||.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 87643211111 1234566678899999974
No 175
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.03 E-value=9.8e-06 Score=76.30 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------T-DNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~-~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
.+..+|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ . ++++++.+|.++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 45689999999999999999986 3347999999 888887764 2 5899999998762 23 59999874
Q ss_pred hhh--------cCC-ChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVF--------HGL-GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vl--------h~~-~d~~~~~il~~~~~aL~pgG~ 225 (228)
--- ..+ ....-..+++.+.+.|+|||.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~ 651 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGT 651 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCE
Confidence 211 001 112346788999999999974
No 176
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.03 E-value=1.3e-05 Score=68.55 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=52.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~p-~~D~v~~~ 198 (228)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++|+.+|+.+. .. .+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4579999999999999999985 468999999 888887764 35799999999662 22 48998876
No 177
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.03 E-value=1.3e-05 Score=65.83 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=74.8
Q ss_pred HHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----
Q 038208 106 RFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEA-FPGIKCTVLDL-PHVVANLPE----- 174 (228)
Q Consensus 106 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~~----- 174 (228)
.|...|...++.. +..++. .++ +....+||+-|.|+|.++..|++. .|..++.-+|. ++..+.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~-~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILM-RLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHH-HTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcceeeCchHHHHHH-HcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 3555555544432 223444 444 678899999999999999999985 58999999998 777777664
Q ss_pred --CCCeEEEeCCCCC-CCC-----CceEeeehhhhcCCChhHHHHHHHHHHHHh-ccCCC
Q 038208 175 --TDNLKYIAGDMFQ-FVP-----PADAFLFKLVFHGLGDEDGLKILKKRREAI-ASNGE 225 (228)
Q Consensus 175 --~~rv~~~~gD~~~-~~p-----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL-~pgG~ 225 (228)
.++|++..+|+.+ -++ .+|.|++ |+|++ -..+..+.++| +|||.
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~ 141 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGR 141 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEE
T ss_pred CCCCCceeEecceecccccccccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCce
Confidence 5789999999965 232 3898876 77776 46789999999 89964
No 178
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.02 E-value=1.2e-05 Score=67.82 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=58.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC--C-C
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ--F-V 189 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~--~-~ 189 (228)
...+++ .+. ..+...+||.+||.|.++..+++..| +.+++++|. |.+++.+++ .+|++++.+||.+ . .
T Consensus 8 l~Evl~-~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVD-ALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHH-hhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 345566 554 34567999999999999999999996 789999999 889887764 3689999999975 1 2
Q ss_pred C----CceEeee
Q 038208 190 P----PADAFLF 197 (228)
Q Consensus 190 p----~~D~v~~ 197 (228)
+ .+|.|++
T Consensus 85 ~~~~~~vDgIl~ 96 (296)
T PRK00050 85 AEGLGKVDGILL 96 (296)
T ss_pred HcCCCccCEEEE
Confidence 1 4676654
No 179
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.00 E-value=1.6e-05 Score=65.19 Aligned_cols=66 Identities=26% Similarity=0.517 Sum_probs=56.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
......||+||.|+|.++..++++ ..+++++++ |.+++...+ ....+++.||+++ ++|-+|.++.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeecc
Confidence 566789999999999999999998 677999998 888876653 5789999999999 78988888764
No 180
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.00 E-value=2e-05 Score=67.14 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCC----CCeEEEeec-hHHHhcCCC------CCCeEE--EeCCCCCC---CC-----
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFP----GIKCTVLDL-PHVVANLPE------TDNLKY--IAGDMFQF---VP----- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~~------~~rv~~--~~gD~~~~---~p----- 190 (228)
.....+||+|||+|.-...|++... ..+++.+|+ .+.++.+.. .+.+++ +++||... +|
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 4556899999999998777766553 467999999 455544321 344555 89999652 21
Q ss_pred -CceEe-eehhhhcCCChhHHHHHHHHHHH-HhccCC
Q 038208 191 -PADAF-LFKLVFHGLGDEDGLKILKKRRE-AIASNG 224 (228)
Q Consensus 191 -~~D~v-~~~~vlh~~~d~~~~~il~~~~~-aL~pgG 224 (228)
...++ ++..++.+++++++..+|+++++ .|+|||
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d 191 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSD 191 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 14444 67779999999999999999999 999985
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.95 E-value=2.1e-05 Score=64.68 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=71.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-------CC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V-------PP 191 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~-------p~ 191 (228)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .++|+++.||..+- + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45789999999999999999999874 779999999 777766653 68999999998662 1 25
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++=. ..+.-...+..+.+.|+|||+
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeE
Confidence 99998753 344456778888899999975
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.95 E-value=2.3e-05 Score=63.73 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCeE-EEeCCCCC----CC----CCceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVA-NLPETDNLK-YIAGDMFQ----FV----PPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-~a~~~~rv~-~~~gD~~~----~~----p~~D~v~~~~vl 201 (228)
+..++||||||+|.++..++++ +..+++++|. +.++. ..+..+++. +...|+.. ++ +.+|+.+++..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 5679999999999999999987 4567999999 53444 455556654 33335442 12 237877766554
Q ss_pred cCCChhHHHHHHHHHHHHhcc
Q 038208 202 HGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~p 222 (228)
+|..+.+.|+|
T Consensus 154 ----------~l~~i~~~l~~ 164 (228)
T TIGR00478 154 ----------ILPELDLLLNP 164 (228)
T ss_pred ----------HHHHHHHHhCc
Confidence 35666666666
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.94 E-value=1.7e-05 Score=72.00 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hH-HHhcCCC-----CCCeEEEeCCCCC---CCCC--ceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PH-VVANLPE-----TDNLKYIAGDMFQ---FVPP--ADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~-~i~~a~~-----~~rv~~~~gD~~~---~~p~--~D~v~~~~v 200 (228)
+...+||||||.|.++..+++++|+..++++|+ .. +...+++ ..++.++++|+.. .+|. .|-+++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999999999999999999999998 33 3332221 5688889888732 3552 677766554
Q ss_pred hcCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
=- |+.. -...+|+.+++.|+|||.
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGN 457 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence 21 4321 135689999999999974
No 184
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=97.90 E-value=1.1e-05 Score=49.63 Aligned_cols=27 Identities=59% Similarity=0.997 Sum_probs=23.6
Q ss_pred HHHHHHHHcChhhHhhhCC-CCcCHHHH
Q 038208 8 MSLKCAIELSIADIIHCHG-RAITLSEL 34 (228)
Q Consensus 8 ~~L~~a~~lglfd~L~~~~-~p~t~~el 34 (228)
++|++|+||||||.|...| +|+|++|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~ei 28 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEI 28 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHH
Confidence 5899999999999999986 79999993
No 185
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.86 E-value=1.5e-05 Score=70.93 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=51.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C---C-CceEee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V---P-PADAFL 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~---p-~~D~v~ 196 (228)
..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+. + . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999999874 47999999 888887764 46899999998642 1 1 378887
Q ss_pred e
Q 038208 197 F 197 (228)
Q Consensus 197 ~ 197 (228)
+
T Consensus 368 ~ 368 (431)
T TIGR00479 368 L 368 (431)
T ss_pred E
Confidence 5
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.82 E-value=2.2e-05 Score=62.10 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=58.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--C-C-ceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V--P-P-ADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~--p-~-~D~v~~ 197 (228)
...+|||++||+|.++.+++.+... +++.+|. +..++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999999999753 7999999 677765543 35799999999652 1 1 2 566665
Q ss_pred hhhhcCCChhHHHHHHHHHHH--HhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRRE--AIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~--aL~pgG 224 (228)
-=....... ..++..+.+ .|+++|
T Consensus 128 DPPy~~~~~---~~~l~~l~~~~~l~~~~ 153 (189)
T TIGR00095 128 DPPFFNGAL---QALLELCENNWILEDTV 153 (189)
T ss_pred CcCCCCCcH---HHHHHHHHHCCCCCCCe
Confidence 433322112 333444433 466665
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.0001 Score=60.78 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC--
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP-- 191 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~-- 191 (228)
..+++ ... ..+..+|++||+|.|.++..++++... ++++++ +..++..++ .++++++.+|+.+ ++|.
T Consensus 20 ~kIv~-~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVE-AAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHH-hcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 44555 443 445789999999999999999999655 777776 555554443 6899999999998 7774
Q ss_pred -ceEeeehhhhcCCChhHHHHHHH
Q 038208 192 -ADAFLFKLVFHGLGDEDGLKILK 214 (228)
Q Consensus 192 -~D~v~~~~vlh~~~d~~~~~il~ 214 (228)
++. +..+.-++.+.+-..+++.
T Consensus 95 ~~~~-vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 95 QPYK-VVANLPYNISSPILFKLLE 117 (259)
T ss_pred CCCE-EEEcCCCcccHHHHHHHHh
Confidence 344 4445555566554444443
No 188
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.79 E-value=0.00011 Score=61.58 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=64.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CC--CeEEEeCCCCC---CCCCceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE----TD--NLKYIAGDMFQ---FVPPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~----~~--rv~~~~gD~~~---~~p~~D~v~~~~vl 201 (228)
.+.+|||+|+|+|..+-++.+.+|.+ +++++|. +.+++.++. .. +......++.. +++..|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46799999999999999998888855 5899998 777765442 11 11111122221 34457999999999
Q ss_pred cCCChhHHHHHHHHHHHHhcc
Q 038208 202 HGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~p 222 (228)
-.++++....+++++-+.+.+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC
Confidence 999988888888888666543
No 189
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.79 E-value=5.8e-06 Score=73.20 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=59.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEeCCCCC---CCCC--ceEeeehhhhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVL---DL-PHVVANLPETDNLKYIAGDMFQ---FVPP--ADAFLFKLVFHG 203 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~---Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p~--~D~v~~~~vlh~ 203 (228)
..+++||||||+|.++..++++. +..+-+ |- +..+.-|-+ -.|-.+-+-+.+ |+|. ||+|.+..++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999983 332222 22 222222221 112222222212 6774 999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCC
Q 038208 204 LGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG 224 (228)
|.+.+ -.+|-.+-+.|+|||
T Consensus 194 W~~~~-g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGG 213 (506)
T ss_pred chhcc-cceeehhhhhhccCc
Confidence 98776 468999999999997
No 190
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=6.9e-05 Score=61.64 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=51.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCC----CCCC---C-ceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMF----QFVP---P-ADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~----~~~p---~-~D~ 194 (228)
+.+...++|+|||+|..+..++...|+.+++++|. +..+..+.+ .+++..+..++. .+.+ + .|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 34566899999999999999999999999999999 666655543 788888865553 3333 2 677
Q ss_pred eeeh
Q 038208 195 FLFK 198 (228)
Q Consensus 195 v~~~ 198 (228)
++.+
T Consensus 226 lvsN 229 (328)
T KOG2904|consen 226 LVSN 229 (328)
T ss_pred EecC
Confidence 7654
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=8.9e-05 Score=58.71 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=68.2
Q ss_pred HHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCeEEEe
Q 038208 122 VVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPE----------------TDNLKYIA 182 (228)
Q Consensus 122 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~----------------~~rv~~~~ 182 (228)
+++ .++..+.+..++||||.|+|.++..++.-- +....+++|+ |++++.+++ ..++.++.
T Consensus 72 ~le-~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 ALE-YLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHH-HHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 344 444346678899999999999999888643 3333488998 888875442 56799999
Q ss_pred CCCCCC---CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 183 GDMFQF---VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 183 gD~~~~---~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
||-..- ...||.|++.- .+.++.+++...|+|||
T Consensus 151 GDgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKPGG 187 (237)
T ss_pred CCccccCCccCCcceEEEcc--------CccccHHHHHHhhccCC
Confidence 999773 33599998772 23456778888888885
No 192
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=8.1e-05 Score=59.80 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC--CeEEEeCCCCC-CCC--CceEeeehhhhcCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TD--NLKYIAGDMFQ-FVP--PADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~--rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~ 204 (228)
...+++||||+-|.....+..+. --+.+.+|. -.|++.++. .+ .++...+|=.. ++. .+|+++.+..+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 46799999999999999999986 346889998 678887765 22 34455566433 444 49999999999955
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
+|- ..-+.++..+|||+|.
T Consensus 151 NdL--Pg~m~~ck~~lKPDg~ 169 (325)
T KOG2940|consen 151 NDL--PGSMIQCKLALKPDGL 169 (325)
T ss_pred ccC--chHHHHHHHhcCCCcc
Confidence 543 5678999999999975
No 193
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.71 E-value=3.9e-05 Score=67.09 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=51.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---V-PPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~-p~~D~v~~~ 198 (228)
...+|||++||+|.++..++.+ ..+++++|. +..++.+++ .++++++.+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3579999999999999999965 468999999 888877664 35899999998652 1 248988775
No 194
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.67 E-value=0.00038 Score=56.91 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=74.6
Q ss_pred hhhhcccCccHHHHHHHHHHhccc----hhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHH
Q 038208 93 FWEFLNQNPGINQRFNEAMASDSE----IMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHV 168 (228)
Q Consensus 93 ~~~~~~~~~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 168 (228)
.++.+.++|.....|+...+..-. -....+++ .+. .-++...|-|+|||.+.++.. -..+++-+||-.
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~-~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a- 209 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIR-KIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA- 209 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHH-HHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec-
Confidence 345556778777777666554322 12334444 333 135667899999999998862 123578888722
Q ss_pred HhcCCCCCCeEEEeCCCCC-CCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 169 VANLPETDNLKYIAGDMFQ-FVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 169 i~~a~~~~rv~~~~gD~~~-~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+-+++..|+.. |++. .|+++++-.|-.- ....+++++++.|+|||.
T Consensus 210 -------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 210 -------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGL 259 (325)
T ss_pred -------CCCceeeccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCce
Confidence 223346788887 6663 8998877766421 236789999999999974
No 195
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.63 E-value=0.00013 Score=62.45 Aligned_cols=88 Identities=23% Similarity=0.451 Sum_probs=68.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCC----Cc
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQFVP----PA 192 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~~p----~~ 192 (228)
.+.++||-+|||.|..++++++ ||+. +++.+|+ |.|++.+++ .+|++++..|.++-+. .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999887 7865 7999999 999998773 6899999999988322 37
Q ss_pred eEeeehhhhcCCChhH--------HHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDED--------GLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~--------~~~il~~~~~aL~pgG~ 225 (228)
|+++. |++|+. ...+-+-+.+.|+++|.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl 402 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGL 402 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCce
Confidence 77654 444432 34567778888999864
No 196
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.63 E-value=0.00018 Score=59.85 Aligned_cols=91 Identities=18% Similarity=0.317 Sum_probs=62.8
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE----TDNLKYIAGDMFQ-FVPP- 191 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~----~~rv~~~~gD~~~-~~p~- 191 (228)
+..+++ .++ ..+...|||||+|.|.++..|++.. .+++++|. +..++..++ .++++++.+|+++ +.+.
T Consensus 19 ~~~Iv~-~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVD-ALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHH-HHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHH-hcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 344555 554 5578999999999999999999997 77899998 666655443 6899999999988 4333
Q ss_pred ---ceEeeehhhhcCCChhHHHHHHHHHHH
Q 038208 192 ---ADAFLFKLVFHGLGDEDGLKILKKRRE 218 (228)
Q Consensus 192 ---~D~v~~~~vlh~~~d~~~~~il~~~~~ 218 (228)
..+.++.+.-++.+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 344455555444443 45555444
No 197
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0003 Score=55.89 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=69.6
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------C
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------V 189 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~ 189 (228)
.++.+ .+. .+.+..+|+|+|+-+|.|+..++++. +..+++++|+.++-. .+.|.++.+|++.+ +
T Consensus 34 ~el~~-k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 34 LELNE-KFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHH-hcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 34444 553 46788999999999999999888876 456799999844333 45699999999873 2
Q ss_pred CC--ceEee---ehhhhcCCC------hhHHHHHHHHHHHHhccCCC
Q 038208 190 PP--ADAFL---FKLVFHGLG------DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 190 p~--~D~v~---~~~vlh~~~------d~~~~~il~~~~~aL~pgG~ 225 (228)
+. +|+|+ ..++--.|. -.-+...+.-+.+.|+|||+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~ 154 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGS 154 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCe
Confidence 22 58886 333322332 23455567777888999975
No 198
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00032 Score=54.43 Aligned_cols=67 Identities=16% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFV--PPADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~--p~~D~v~~~~v 200 (228)
...++|||||+|..+..+++.. |+.-....|+ |+.++...+ ..++..+..|+.+.+ .+.|+++++--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 6789999999999999998875 7888999999 887775433 455778888887732 24787777653
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.50 E-value=0.00014 Score=63.61 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCCceEeeehhhhcC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF---VPPADAFLFKLVFHG 203 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~---~p~~D~v~~~~vlh~ 203 (228)
..+|||++||+|.++..++++.+..+++++|+ |..++.+++ .+++++..+|..+. .+.||+|++-- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 45899999999999999999887668999999 888877664 34577899998652 23599998742 2
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. ...++..+.+.++|||+
T Consensus 135 -Gs--~~~~l~~al~~~~~~gi 153 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKRGGL 153 (382)
T ss_pred -CC--cHHHHHHHHHHhcCCCE
Confidence 11 14577887888899875
No 200
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=9.6e-05 Score=55.23 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=52.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--C-ceEeeehhhhc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--P-ADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~-~D~v~~~~vlh 202 (228)
...++.|+|||.|.+. ++-.+|.. .++++|+ |+.++.... .-++.+++.|+.++.+ + ||..+++.-+.
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 4679999999999998 44456655 5899999 888887664 4467899999988544 3 89988877654
No 201
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.45 E-value=0.00025 Score=53.37 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=57.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--CCCceEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQF--VPPADAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~--~p~~D~v 195 (228)
.+..+|+|+|||.|.++..++.. .|+++++++|. +..++.+.. ..++++..+++... ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999982 27899999998 666655442 35677777776542 2347888
Q ss_pred eehhhhcCCChhH
Q 038208 196 LFKLVFHGLGDED 208 (228)
Q Consensus 196 ~~~~vlh~~~d~~ 208 (228)
+--|.--+.++.-
T Consensus 104 vgLHaCG~Ls~~~ 116 (141)
T PF13679_consen 104 VGLHACGDLSDRA 116 (141)
T ss_pred EEeecccchHHHH
Confidence 8777777777653
No 202
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.43 E-value=0.001 Score=56.93 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=53.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
....++|||||++|.|+..++++ +.+++++|...+-......++|+++.+|-+...| .+|++++=.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 46789999999999999999998 5699999986666666668899999999887433 3777766544
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.40 E-value=6.9e-05 Score=57.63 Aligned_cols=62 Identities=21% Similarity=0.466 Sum_probs=46.0
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--C-ceEeeeh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP--P-ADAFLFK 198 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p--~-~D~v~~~ 198 (228)
.+|+|+-||.|.-++.+++.+. +++.+|+ |..++.++. .+||+++++|+++. +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3799999999999999999964 4899998 777776653 67999999999872 22 2 7999865
No 204
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.40 E-value=0.00024 Score=56.76 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=61.6
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCC-----CceEeeehhhhcCCC-hh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ-FVP-----PADAFLFKLVFHGLG-DE 207 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~~p-----~~D~v~~~~vlh~~~-d~ 207 (228)
-++|||||=+...... .++-+.++-+||.+. .+. +...||++ |+| .||+|.++-||.+.| +.
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~~~--I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------HPG--ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCCC------CCC--ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 5999999876554433 355677999998331 122 36679988 777 299999999999998 46
Q ss_pred HHHHHHHHHHHHhccCCC
Q 038208 208 DGLKILKKRREAIASNGE 225 (228)
Q Consensus 208 ~~~~il~~~~~aL~pgG~ 225 (228)
++-.+|+++++.|+|+|.
T Consensus 122 ~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 777889999999999975
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.35 E-value=0.00016 Score=62.84 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=43.5
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 888887764 3579999999865
No 206
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0006 Score=53.18 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=62.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeC-CCCCC---------CCC--ceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAG-DMFQF---------VPP--ADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~g-D~~~~---------~p~--~D~v~~ 197 (228)
+.+..+|||+||.+|.|+.-..++. |+..+.++|+-.+.. .+.++++++ |+..| +|. .|+|+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5678899999999999999777776 999999999855443 456666666 66543 343 677764
Q ss_pred hhhh---------cCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVF---------HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vl---------h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-+.- |.-.-+-|..+|.-+...+.|+|+
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~ 179 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGS 179 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcE
Confidence 3221 222335566666666677778864
No 207
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0013 Score=52.47 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC---CCCC--ceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE-----TDNLKYIAGDMFQ---FVPP--ADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~-----~~rv~~~~gD~~~---~~p~--~D~v~~~~v 200 (228)
..+..+||.||=|-|.....+.++.|..+.++---|+|....+. .++|..+.|-... .+|+ ||=|+.-..
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 36789999999999999999999989888887767999987764 6788888885543 4553 777654432
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
-- .-++.+.+.+.+.+.|||+|+
T Consensus 179 ~e--~yEdl~~~hqh~~rLLkP~gv 201 (271)
T KOG1709|consen 179 SE--LYEDLRHFHQHVVRLLKPEGV 201 (271)
T ss_pred hh--HHHHHHHHHHHHhhhcCCCce
Confidence 11 126668889999999999976
No 208
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.33 E-value=0.0012 Score=59.27 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=68.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCC-ceEee---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVPP-ADAFL--- 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p~-~D~v~--- 196 (228)
....+|||+++++|.=+..|++...+ ..++..|+ +.-+..+++ ..+|.+...|... .++. ||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 46689999999999999999998754 57999998 555544432 4678888888754 2343 89987
Q ss_pred -ehh---------hhcCCChhHH-------HHHHHHHHHHhccCCC
Q 038208 197 -FKL---------VFHGLGDEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 197 -~~~---------vlh~~~d~~~-------~~il~~~~~aL~pgG~ 225 (228)
++. +...|+.++. .+||+++.+.|||||.
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~ 237 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT 237 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 331 2334554433 7899999999999974
No 209
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.30 E-value=0.00019 Score=57.18 Aligned_cols=89 Identities=24% Similarity=0.349 Sum_probs=62.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C-CceEeeehhh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFV-P-PADAFLFKLV 200 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~-p-~~D~v~~~~v 200 (228)
..+..+|+|.-||.|.++..+++..+..+++..|+ |..++-+++ .++|..+.+|..+-. . .+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34678999999999999999999877888999999 877765442 678999999997733 2 489777654
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|. .+..+|..+.+.+++||+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKEGGI 197 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEEEEE
T ss_pred ----hH-HHHHHHHHHHHHhcCCcE
Confidence 32 234678888888888864
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.28 E-value=0.00018 Score=62.64 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=43.2
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 7999999 888877664 3589999999865
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.28 E-value=0.00014 Score=56.85 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------C----CCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------V----PPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~----p~~D~v~~~ 198 (228)
+..++||+||++|.|+..++++. +..+++++|+...- ....+.++.+|+.++ . ..+|+|++=
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999998 77899999994431 135666667776541 1 137888654
Q ss_pred hh---hcCC------ChhHHHHHHHHHHHHhccCC
Q 038208 199 LV---FHGL------GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ~v---lh~~------~d~~~~~il~~~~~aL~pgG 224 (228)
.. -.++ .-+.+...|.-+.+.|+|||
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG 133 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGG 133 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 42 1111 11333444555556689997
No 212
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.28 E-value=0.00062 Score=50.87 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=42.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ 187 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~ 187 (228)
+++|||||.|.++..+++.+|..+++++|. |...+.+++ ..+++++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 589999999999999999999999999998 777765543 2457777766654
No 213
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.25 E-value=0.00023 Score=56.13 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=59.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC------CCCeEEEeCCCCCCCCC-ceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVA-------NLPE------TDNLKYIAGDMFQFVPP-ADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-------~a~~------~~rv~~~~gD~~~~~p~-~D~v~~ 197 (228)
....+.|||||.|.++..+...+|+.-++++++ -.|.+ .++. ..++.++..+.+.-+|. |.--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 446799999999999999999999999999987 33332 2221 45677777776665553 222222
Q ss_pred hhhhcCCChh-----------HHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDE-----------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~-----------~~~~il~~~~~aL~pgG~ 225 (228)
+-.++.+||+ -+..++.+..=.|++||.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~ 178 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGI 178 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCce
Confidence 2222223322 124567777778888865
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.25 E-value=0.00083 Score=52.47 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=69.0
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCceEeeehhhhcCCCh
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ-FVPPADAFLFKLVFHGLGD 206 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~-~~p~~D~v~~~~vlh~~~d 206 (228)
.++.|+|.|+|.++.-.+++ .-+++.++. |...+-+.+ ..+++++.||... ++..+|+|++-..=.-+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58999999999999877766 557899988 666555554 5789999999988 7877999987765444556
Q ss_pred hHHHHHHHHHHHHhccCC
Q 038208 207 EDGLKILKKRREAIASNG 224 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG 224 (228)
++...+++.+.+-|+-.+
T Consensus 112 E~qVpV~n~vleFLr~d~ 129 (252)
T COG4076 112 EKQVPVINAVLEFLRYDP 129 (252)
T ss_pred ccccHHHHHHHHHhhcCC
Confidence 666788888888887664
No 215
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.22 E-value=0.0012 Score=51.80 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=52.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIK---------CTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVP-- 190 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p-- 190 (228)
+.+...|+|-=||+|.++++.+...++.. +++.|+ +.+++.++. ...|.+...|+.+ +++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999888777766 999999 888876653 5679999999988 533
Q ss_pred CceEeeehhhhcC
Q 038208 191 PADAFLFKLVFHG 203 (228)
Q Consensus 191 ~~D~v~~~~vlh~ 203 (228)
.+|+|++.--.-.
T Consensus 106 ~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 106 SVDAIVTNPPYGR 118 (179)
T ss_dssp BSCEEEEE--STT
T ss_pred CCCEEEECcchhh
Confidence 3899888765543
No 216
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.14 E-value=0.0024 Score=46.79 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=57.9
Q ss_pred EEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEeCCCCC---CCC---CceEeeehhhhc
Q 038208 137 LVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE-T--DN---LKYIAGDMFQ---FVP---PADAFLFKLVFH 202 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~-~--~r---v~~~~gD~~~---~~p---~~D~v~~~~vlh 202 (228)
++|+|||+|... .+.+..+. ..++++|. +.++...+. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 44444443 47788898 655554332 1 11 6788888764 333 38999 555544
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
++.+ ....++++.+.++|+|.
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~ 150 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGR 150 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcE
Confidence 4444 57899999999999864
No 217
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.11 E-value=0.00092 Score=53.99 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=66.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCC--CceEeee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ---FVP--PADAFLF 197 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~---~~p--~~D~v~~ 197 (228)
+...+|||.+.|-|.++++.+++.. ..++-++- |.|++.|.. ..+|+++.||..+ .++ +||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi- 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII- 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe-
Confidence 4578999999999999999999842 35666665 888887763 4479999999987 455 388764
Q ss_pred hhhhcCCC------hhHHHHHHHHHHHHhccCC
Q 038208 198 KLVFHGLG------DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~------d~~~~~il~~~~~aL~pgG 224 (228)
||-| .--...+-+++++.|+|||
T Consensus 211 ----HDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 211 ----HDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred ----eCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 5433 2345678999999999996
No 218
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0018 Score=52.69 Aligned_cols=93 Identities=19% Similarity=0.312 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC----CeEEEeec-hHHHhcCC-----C--CCCeEEEeCCCCC---CCCC---ce
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG----IKCTVLDL-PHVVANLP-----E--TDNLKYIAGDMFQ---FVPP---AD 193 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dl-p~~i~~a~-----~--~~rv~~~~gD~~~---~~p~---~D 193 (228)
-+..+++|+|.|+..=++.+...+.+ ++++-+|+ ..++.... + .-.|.-+++|+.. .+|. ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888887766 78999999 44443221 2 4457778899865 2442 34
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.+++...|.++++++|..+|.+++.+|.||-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 4578889999999999999999999999983
No 219
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.99 E-value=0.00098 Score=52.47 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=61.4
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCeEEEeCCCCC-CCC-CceEeeehhhhcCCCh
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQ-FVP-PADAFLFKLVFHGLGD 206 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~-~~p-~~D~v~~~~vlh~~~d 206 (228)
+++|||.|.|.=+.-++=.+|+.+++++|- . ..+..+.. .++++++++.+.+ ..+ .||+++++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 2 22332221 5789999999977 333 599999998641
Q ss_pred hHHHHHHHHHHHHhccCC
Q 038208 207 EDGLKILKKRREAIASNG 224 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG 224 (228)
...++.-+...++|||
T Consensus 127 --l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGG 142 (184)
T ss_dssp --HHHHHHHHGGGEEEEE
T ss_pred --HHHHHHHHHHhcCCCC
Confidence 2467777777888886
No 220
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.97 E-value=0.0024 Score=53.32 Aligned_cols=90 Identities=14% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCeEEEecCCCcHHHH-HHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCCCceEeeehh
Q 038208 134 LGSLVDVGGGNGSFSR-IISEAF-PGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ---FVPPADAFLFKL 199 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~-~l~~~~-p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~---~~p~~D~v~~~~ 199 (228)
+.+|+=||+|+=-++. .+++++ ++..++++|+ |+.++.+++ ..+++|+++|..+ ++.++|+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4699999999766554 555443 7888999999 777776643 6899999999976 245799998877
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
..- ...++..+||.++.+.|+||.
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTS
T ss_pred hcc-cccchHHHHHHHHHhhCCCCc
Confidence 663 444566899999999999984
No 221
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.90 E-value=0.0011 Score=54.22 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=56.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CceEeeehhhhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVP--PADAFLFKLVFHG 203 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p--~~D~v~~~~vlh~ 203 (228)
+.+.+|+|||||---++.-.....|+.+++++|+ +..++.... ..+.+....|..+..| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999999998888889999999999 666665443 5678888889998655 3999999999987
Q ss_pred CChh
Q 038208 204 LGDE 207 (228)
Q Consensus 204 ~~d~ 207 (228)
+...
T Consensus 184 le~q 187 (251)
T PF07091_consen 184 LERQ 187 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 222
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.81 E-value=0.0039 Score=49.04 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPPADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~ 204 (228)
+-..++|||+|.|+|..++.-++.. ...++.-|+ |..+..++. .-.|.+...|..-+-|.+|+++...++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 3457899999999999999888764 334666676 555554442 446788888886655579999999999766
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 038208 205 GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG 224 (228)
+. +.+++. ....++-.|
T Consensus 156 ~~--a~~l~~-~~~~l~~~g 172 (218)
T COG3897 156 TE--ADRLIP-WKDRLAEAG 172 (218)
T ss_pred hH--HHHHHH-HHHHHHhCC
Confidence 53 456666 666665554
No 223
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.72 E-value=0.002 Score=51.61 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=54.0
Q ss_pred EEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--C-ceEeeehhhhcCCC
Q 038208 137 LVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP--P-ADAFLFKLVFHGLG 205 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p--~-~D~v~~~~vlh~~~ 205 (228)
|.||||-.|.+...++++..--+++..|+ +.-++.|++ .++|++..+|=++.++ + .|+|++.-+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999988888999999 777776653 6899999999888654 3 78887665322
Q ss_pred hhHHHHHHHHHH
Q 038208 206 DEDGLKILKKRR 217 (228)
Q Consensus 206 d~~~~~il~~~~ 217 (228)
.....||.+..
T Consensus 78 -~lI~~ILe~~~ 88 (205)
T PF04816_consen 78 -ELIIEILEAGP 88 (205)
T ss_dssp -HHHHHHHHHTG
T ss_pred -HHHHHHHHhhH
Confidence 33445555443
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.70 E-value=0.0098 Score=56.32 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=63.7
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHC------------------------------------------CCCeEEEeec-hHH
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAF------------------------------------------PGIKCTVLDL-PHV 168 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~------------------------------------------p~~~~~~~Dl-p~~ 168 (228)
.+...++|-.||+|.++++.+... +..+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 346799999999999999876531 1236899999 888
Q ss_pred HhcCCC-------CCCeEEEeCCCCC-CCC----CceEeeehhhhcC-CC-hhHHHHHHHHHHHHhc
Q 038208 169 VANLPE-------TDNLKYIAGDMFQ-FVP----PADAFLFKLVFHG-LG-DEDGLKILKKRREAIA 221 (228)
Q Consensus 169 i~~a~~-------~~rv~~~~gD~~~-~~p----~~D~v~~~~vlh~-~~-d~~~~~il~~~~~aL~ 221 (228)
++.++. .++|++..+|+.+ +.+ .+|+|+++--.-. +. +++...+.+.+.+.++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 887764 4679999999977 332 3899887754322 33 3445566666666665
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.0027 Score=51.11 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=64.3
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCeEEEeCCCCC--CCCC-ceEeeehhhhcC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQ--FVPP-ADAFLFKLVFHG 203 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~--~~p~-~D~v~~~~vlh~ 203 (228)
..+++|||.|.|.=+.-++=.+|+++++++|- . ..++.+.. .++++++++.+.+ +.+. ||+|+++-+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999998899999999995 2 33343332 6789999998866 2335 99999887541
Q ss_pred CChhHHHHHHHHHHHHhccCCC
Q 038208 204 LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 204 ~~d~~~~~il~~~~~aL~pgG~ 225 (228)
. ..++.-+...+++||.
T Consensus 147 L-----~~l~e~~~pllk~~g~ 163 (215)
T COG0357 147 L-----NVLLELCLPLLKVGGG 163 (215)
T ss_pred h-----HHHHHHHHHhcccCCc
Confidence 2 3455666677777654
No 226
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.00084 Score=57.23 Aligned_cols=91 Identities=24% Similarity=0.409 Sum_probs=59.9
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCe-EEEeechH----HHhcCCC---CCCeEEEeCCCCC---CCCCceEeeehhhhc
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDLPH----VVANLPE---TDNLKYIAGDMFQ---FVPPADAFLFKLVFH 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dlp~----~i~~a~~---~~rv~~~~gD~~~---~~p~~D~v~~~~vlh 202 (228)
+.++||||-|.|.-+-+.-.-+|+++ +++++... +++...+ ..+-..-..|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56799999999999999999999986 66666632 2222211 2222233344433 567677776666666
Q ss_pred CCC----hhHHHHHHHHHHHHhccCC
Q 038208 203 GLG----DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 203 ~~~----d~~~~~il~~~~~aL~pgG 224 (228)
.+- +......++++-..+.|||
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCC
Confidence 543 3334448899999999986
No 227
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.54 E-value=0.0066 Score=47.78 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=62.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeechHHHh-----------cCCC--CCCeEEEeCCCCC-CCC-CceE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDLPHVVA-----------NLPE--TDNLKYIAGDMFQ-FVP-PADA 194 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~-----------~a~~--~~rv~~~~gD~~~-~~p-~~D~ 194 (228)
+....+|+|+=.|.|.|++-+.... |.-.+..+--.+... .+++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 5678999999999999999888764 554444432112211 1111 3456666555544 223 3677
Q ss_pred eeehhhhcC-----CChhHHHHHHHHHHHHhccCCCC
Q 038208 195 FLFKLVFHG-----LGDEDGLKILKKRREAIASNGER 226 (228)
Q Consensus 195 v~~~~vlh~-----~~d~~~~~il~~~~~aL~pgG~~ 226 (228)
+.....-|+ ++...+.++.+.++++|||||+-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~ 162 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVY 162 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEE
Confidence 766544443 34567789999999999999874
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.54 E-value=0.0051 Score=56.23 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--------C
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPG--------IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF--------V 189 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~--------~ 189 (228)
...+|+|.+||+|.++.+++++.+. ..++++|+ +..+..++. ...++....|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999987753 46799999 666665442 12455666665431 1
Q ss_pred CCceEeeehh
Q 038208 190 PPADAFLFKL 199 (228)
Q Consensus 190 p~~D~v~~~~ 199 (228)
+.||+|+.+=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 2489997654
No 229
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.48 E-value=0.0015 Score=53.98 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=56.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCC---------------------C-------------CC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLP---------------------E-------------TD 176 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~---------------------~-------------~~ 176 (228)
+..++||||+|+-.+- ++...+..+ ++..|. +.-.+..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999997663 333344443 777787 44332111 0 11
Q ss_pred CeE-EEeCCCCCC--C------CC-ceEeeehhhhcCC--ChhHHHHHHHHHHHHhccCC
Q 038208 177 NLK-YIAGDMFQF--V------PP-ADAFLFKLVFHGL--GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 177 rv~-~~~gD~~~~--~------p~-~D~v~~~~vlh~~--~d~~~~~il~~~~~aL~pgG 224 (228)
.|+ ++..|.+++ + |+ +|++++..+|..- +.++-.+.++++.+.|||||
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG 193 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG 193 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence 244 667888772 2 33 9999999998764 34677899999999999996
No 230
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.45 E-value=0.0026 Score=55.32 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCC--ceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPP--ADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~--~D~v~~~~vl 201 (228)
....++|+|||.|.....+..- -..+++++|. +.-+..... ..+..++.+|+.+ ++++ +|.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 3457999999999999988763 4667888887 333332221 5667779999988 6663 9999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+.++- ..++++++++++|||.
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKPGGL 210 (364)
T ss_pred ccCCcH--HHHHHHHhcccCCCce
Confidence 888876 6899999999999974
No 231
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.24 E-value=0.013 Score=49.63 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=53.4
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ 187 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~ 187 (228)
..++++ .+. ..+...+||.=+|.|..+..|+++.|+.+++++|. |.+++.+++ .+|++++.++|.+
T Consensus 9 l~Evl~-~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVE-GLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHH-hcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 345555 443 34567999999999999999999998899999999 888877754 4689999999865
No 232
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=96.19 E-value=0.018 Score=45.22 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=63.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCC-----C------CC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE---------TDNLKYIAGDMFQF-----V------PP 191 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~---------~~rv~~~~gD~~~~-----~------p~ 191 (228)
++...||-+|||-=.....+...+++++++-+|+|++++.-++ ..+++++..|+.++ + ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4456999999999999999999888999999999998875442 23467899999862 1 12
Q ss_pred -ceEeeehhhhcCCChhHHHHHHHHHH
Q 038208 192 -ADAFLFKLVFHGLGDEDGLKILKKRR 217 (228)
Q Consensus 192 -~D~v~~~~vlh~~~d~~~~~il~~~~ 217 (228)
.-++++-.++.+++++++..+|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 57888888999999999999998764
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.17 E-value=0.0015 Score=46.33 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=37.3
Q ss_pred EEecCCCcHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC---CC--CceEeeehhhhc
Q 038208 138 VDVGGGNGSFSRIISEAFPGI---KCTVLDL-P---HVVANLPE---TDNLKYIAGDMFQF---VP--PADAFLFKLVFH 202 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-p---~~i~~a~~---~~rv~~~~gD~~~~---~p--~~D~v~~~~vlh 202 (228)
|+||+..|..+..+++..+.. +++.+|. + ..-+..++ .++++++.+|..+- ++ .+|++++=- -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 6899998 5 23333332 67899999999652 33 488887654 22
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+....-++.+.+.|+|||+
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggv 100 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGV 100 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEE
T ss_pred --CHHHHHHHHHHHHHHcCCCeE
Confidence 235667889999999999975
No 234
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.0083 Score=53.68 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=45.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMF 186 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~ 186 (228)
++....++|+-||||.++.++++. -.+++++++ |+.++.|+. ..+++|++|...
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 556689999999999999999986 467899998 888888774 678999999443
No 235
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.04 E-value=0.035 Score=46.18 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=71.1
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC----------CC-
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLP---------ETDNLKYIAGDMFQFV----------PP- 191 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------~~~rv~~~~gD~~~~~----------p~- 191 (228)
.+...||.+|||-=.....+... +++++.=+|+|++++.-+ ...+++++..|+...+ |+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998888776422 257888888899886422 2578999999986321 11
Q ss_pred ceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 192 ADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.-++++-.++.+++++++.++|+.+.+...||+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs 191 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGS 191 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCc
Confidence 457788899999999999999999999887774
No 236
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.04 E-value=0.018 Score=48.86 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ 187 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~ 187 (228)
..++++ .+. ..+...+||.=-|.|.++.+|++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~-~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLE-ALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHH-HHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHH-hhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 455566 554 45678999999999999999999999999999999 888866653 5899999999865
No 237
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.99 E-value=0.029 Score=45.29 Aligned_cols=90 Identities=10% Similarity=0.132 Sum_probs=68.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHh-------cCCCCCCeEEEeCCCCCCC----C-----Cc
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVA-------NLPETDNLKYIAGDMFQFV----P-----PA 192 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~-------~a~~~~rv~~~~gD~~~~~----p-----~~ 192 (228)
+-++++++|||.=+|.-+..++.+.|+ .+++.+|+ +...+ .|.-...|+++.++..+.+ + .|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 457899999999999999999999975 58999998 33333 2333788999999987632 1 38
Q ss_pred eEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 193 DAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 193 D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
|++++= +|.+.- ...+.++.+.+++||+
T Consensus 151 DfaFvD----adK~nY-~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 151 DFAFVD----ADKDNY-SNYYERLLRLLRVGGV 178 (237)
T ss_pred eEEEEc----cchHHH-HHHHHHHHhhcccccE
Confidence 888763 355554 4889999999999986
No 238
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.99 E-value=0.0058 Score=43.40 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
....++|||||+|.+..-|.+. +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4678999999999999988887 566888885
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.065 Score=44.44 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=63.3
Q ss_pred HHHHHHHHhccchh----HHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-hHHHhcCC----C
Q 038208 105 QRFNEAMASDSEIM----TSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-PHVVANLP----E 174 (228)
Q Consensus 105 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----~ 174 (228)
+.|..+|-..++.. ...++. .++ .....+||+-|.|+|.++.+|++.- |.-++.-+|. ..-.+.+. +
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~-~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~ 152 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILS-MLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE 152 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHH-Hhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence 44566666555432 334455 555 6778999999999999999999986 8888888988 33333333 2
Q ss_pred ---CCCeEEEeCCCCCC-CC----CceEeee
Q 038208 175 ---TDNLKYIAGDMFQF-VP----PADAFLF 197 (228)
Q Consensus 175 ---~~rv~~~~gD~~~~-~p----~~D~v~~ 197 (228)
.+++++...|.... ++ .+|.|++
T Consensus 153 hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 153 HGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred hCCCcceEEEEeecccCCccccccccceEEE
Confidence 78999999998762 33 2788765
No 240
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.79 E-value=0.0042 Score=48.85 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---C-CceEeee
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---V---P-PADAFLF 197 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~---p-~~D~v~~ 197 (228)
...+|||+=||+|.++.+.+.|. ..+++.+|. +..+..+++ .++++.+..|.+.. . . .||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 57899999999999999999985 347999998 666665543 45799999997652 1 2 4999987
Q ss_pred hhhhcCCChhHHHHHHHHHH--HHhccCC
Q 038208 198 KLVFHGLGDEDGLKILKKRR--EAIASNG 224 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~--~aL~pgG 224 (228)
-=... .... ...++..+. ..|+++|
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~~~ 147 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNEDG 147 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEEEE
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCCCE
Confidence 64433 2221 245666665 5667664
No 241
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.75 E-value=0.023 Score=48.31 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C-CC---
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEA-------FPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQ-F-VP--- 190 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~-~-~p--- 190 (228)
....+|+|-.||+|.++.++.+. .+..++.++|+ +.++..++. .....+..+|.+. + ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34568999999999999998874 47889999999 666554431 3345688899876 2 22
Q ss_pred CceEeeehhhhcC--CChh-----------------HHHHHHHHHHHHhccCCC
Q 038208 191 PADAFLFKLVFHG--LGDE-----------------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 191 ~~D~v~~~~vlh~--~~d~-----------------~~~~il~~~~~aL~pgG~ 225 (228)
.||+|+++-..-. |.++ .-..++..+.+.|++||.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 4999986543322 1111 113478889999999974
No 242
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.72 E-value=0.03 Score=49.01 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=64.9
Q ss_pred CeEEEecCCCcHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--C--CCceEeeehhhhc
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPG-IKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF--V--PPADAFLFKLVFH 202 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~--~--p~~D~v~~~~vlh 202 (228)
-+|||.-||+|..+++++++.++ -+++..|+ |..++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998765 46999999 888876654 34688999998762 1 2499988743 2
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+ ..++..+.+++++||.
T Consensus 124 Gs~----~~fld~al~~~~~~gl 142 (374)
T TIGR00308 124 GTP----APFVDSAIQASAERGL 142 (374)
T ss_pred CCc----HHHHHHHHHhcccCCE
Confidence 222 3578888899998864
No 243
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.38 E-value=0.015 Score=48.68 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeech-HHHhcCCC----------CCCeEEEeCCCCC---CCC--Cce
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDLP-HVVANLPE----------TDNLKYIAGDMFQ---FVP--PAD 193 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dlp-~~i~~a~~----------~~rv~~~~gD~~~---~~p--~~D 193 (228)
.+++.+|+-||+|.|.++++..+. +.+ .+..+|+. .+++..++ .++|.++.||-+. ..+ .+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 357899999999999999999987 666 47888884 45544332 7899999999765 333 499
Q ss_pred EeeehhhhcCCCh--hHHHHHHHHHHHHhccCCC
Q 038208 194 AFLFKLVFHGLGD--EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 194 ~v~~~~vlh~~~d--~~~~~il~~~~~aL~pgG~ 225 (228)
+|+.-..=-.-|- --....+.-+.++|||+|+
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv 231 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGV 231 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcE
Confidence 9875432111111 1123456678899999986
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.33 E-value=0.036 Score=44.49 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=61.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQFVP---PADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~~p---~~D~v~~~~v 200 (228)
.....+.||||-.+.+...+.+.+|...++..|+ +.-++.|.. .++++...+|-+.++. +.|++++.-+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3455699999999999999999999999999998 655554432 7899999999988543 3888876543
Q ss_pred hcCCChhHHHHHHHHHHHHh
Q 038208 201 FHGLGDEDGLKILKKRREAI 220 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL 220 (228)
= -...+.||.+-.+-|
T Consensus 95 G----G~lI~~ILee~~~~l 110 (226)
T COG2384 95 G----GTLIREILEEGKEKL 110 (226)
T ss_pred c----HHHHHHHHHHhhhhh
Confidence 2 233345555444443
No 245
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.27 E-value=0.035 Score=47.05 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEeCCCCC-CCC------C----
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDLPHVVANLPE---------TDNLKYIAGDMFQ-FVP------P---- 191 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~~---------~~rv~~~~gD~~~-~~p------~---- 191 (228)
+...||-+|||-=.-+..+- +| ++++.-+|+|++++.-++ ..++++++.|+++ +++ +
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 47899999999776665543 34 467777788999975322 3489999999995 433 1
Q ss_pred -ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 192 -ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 192 -~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.-++++-.++.++++++..++|++|....+||
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~g 202 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPG 202 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCC
Confidence 45778999999999999999999999998887
No 246
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0044 Score=47.34 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCeEEEecCCCcHHH-HHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--C--C-CceEeee
Q 038208 134 LGSLVDVGGGNGSFS-RIISEAFPGIKCTVLDL-PHVVANLPE---------TDNLKYIAGDMFQF--V--P-PADAFLF 197 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~-~~l~~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~~gD~~~~--~--p-~~D~v~~ 197 (228)
..+||++|||--.++ ..++...|...+.+-|- ...++..++ ..++..+.-+.... + . .||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999965555 45566668888999997 555544332 45666666555442 1 1 3999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..++ +=|+-...+.+.|..-|+|-|.
T Consensus 110 ADCl--FfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 110 ADCL--FFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred ccch--hHHHHHHHHHHHHHHHhCcccc
Confidence 9998 4456678899999999999864
No 247
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.13 E-value=0.15 Score=42.62 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech-HHH-------hc---CC----------------------C-----
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVV-------AN---LP----------------------E----- 174 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i-------~~---a~----------------------~----- 174 (228)
+..+||-=|||-|.++.+|+++ +..+.+.+.. .|+ .. .. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999998 5566777762 221 11 00 0
Q ss_pred ---------CCCeEEEeCCCCC--CCC----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ---------TDNLKYIAGDMFQ--FVP----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ---------~~rv~~~~gD~~~--~~p----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
..+++...|||.+ +.+ .+|+|+..+.+-- -+....-|+.|++.|||||.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCE
Confidence 3579999999988 223 3999988865532 24467889999999999973
No 248
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.02 Score=51.05 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=51.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-CC---CceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ--F-VP---PADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~--~-~p---~~D~v~~ 197 (228)
..+..+|+|+=||.|.++..++++ ..+++++|+ |+.++.|++ .++++|+.+|..+ + .. .+|+|++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 346679999999999999999965 567999999 888887764 5679999999876 2 21 3677654
No 249
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.12 Score=44.99 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGI---------------------------------------KCTVLDL-PHVVA 170 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~~~~Dl-p~~i~ 170 (228)
|.....++|==||+|+++++.+-..+++ .++++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4555799999999999999988877642 2679999 88888
Q ss_pred cCCC-------CCCeEEEeCCCCC-CCC--CceEeeehhhhcC-CChhH-HHHHHHHHHHHh
Q 038208 171 NLPE-------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHG-LGDED-GLKILKKRREAI 220 (228)
Q Consensus 171 ~a~~-------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~-~~d~~-~~~il~~~~~aL 220 (228)
.|+. .+.|+|..+|+.. +-| .+|+|+++-.--. +.++. ...+-+..-+.|
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 7763 7889999999976 333 5898887754332 23332 222444444444
No 250
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.92 E-value=0.049 Score=46.90 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=64.3
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ--FV-PPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~--~~-p~~D~v~~~~v 200 (228)
....+|||.=+|.|.++..+++...-. ++.+|+ |..++-+++ .++|+.+.||..+ +. +.||-|+|...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 348899999999999999999975333 999999 887765543 5669999999987 33 45999998875
Q ss_pred hcCCChhHHHHHHHHHHHHhccCC
Q 038208 201 FHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~pgG 224 (228)
- .+.+.+-.+.+.+++||
T Consensus 266 ~------~a~~fl~~A~~~~k~~g 283 (341)
T COG2520 266 K------SAHEFLPLALELLKDGG 283 (341)
T ss_pred C------cchhhHHHHHHHhhcCc
Confidence 4 12345555566666664
No 251
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.91 E-value=0.16 Score=45.94 Aligned_cols=123 Identities=17% Similarity=0.302 Sum_probs=78.3
Q ss_pred hhhcccCccHHHHHHHHHHhccchhHHHHHHHhhhhhc-cCCCeEEEecCCCcHHHHHHHHH----CCCCeEEEeec-hH
Q 038208 94 WEFLNQNPGINQRFNEAMASDSEIMTSFVVKAECKQIF-EGLGSLVDVGGGNGSFSRIISEA----FPGIKCTVLDL-PH 167 (228)
Q Consensus 94 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~ 167 (228)
|+-+++||-....|++++- ..+++ ..+.+- +....++-+|+|.|-+..+..+. ...++.++++- |.
T Consensus 335 YetFEkD~VKY~~Yq~Ai~-------~AL~D-rvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAIL-------KALLD-RVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhccchHHHHHHHHHH-------HHHHh-hCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 5666677777777776642 22233 322111 12456788999999988876664 23456777776 65
Q ss_pred HHhcCCC------CCCeEEEeCCCCC-CCC--CceEeeehhhhcCCCh-hHHHHHHHHHHHHhccCCC
Q 038208 168 VVANLPE------TDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGLGD-EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 168 ~i~~a~~------~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d-~~~~~il~~~~~aL~pgG~ 225 (228)
.+--.+. ..||+++..||.+ +-| .+|+++. ..|..+.| |-...-|..+-..|||+|+
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgI 473 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGI 473 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCce
Confidence 5543332 7899999999988 444 4887754 34444443 3344458888899999975
No 252
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.89 E-value=0.2 Score=44.00 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCcHHHHH--------HHHH-------CCCCeEEEeechH-----HHhcCC---------------CCCC
Q 038208 133 GLGSLVDVGGGNGSFSRI--------ISEA-------FPGIKCTVLDLPH-----VVANLP---------------ETDN 177 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~--------l~~~-------~p~~~~~~~Dlp~-----~i~~a~---------------~~~r 177 (228)
+.-+|+|+|||+|..+.. +.++ -|++++..-|+|. +..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 466899999999966542 3333 2568888889872 111111 0111
Q ss_pred ---eEEEeCCCCC-CCCC--ceEeeehhhhcCCC
Q 038208 178 ---LKYIAGDMFQ-FVPP--ADAFLFKLVFHGLG 205 (228)
Q Consensus 178 ---v~~~~gD~~~-~~p~--~D~v~~~~vlh~~~ 205 (228)
+.-++|.|.. -+|. .++++.++.||.++
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 4456678887 4673 89999999999765
No 253
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.73 E-value=0.05 Score=46.01 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=65.8
Q ss_pred CeEEEecCCCcHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC-----------------
Q 038208 135 GSLVDVGGGNGSFSRIISEAF--------------------PGIKCTVLDL---PHVVANLPE----------------- 174 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---p~~i~~a~~----------------- 174 (228)
.+||-||||.|.=..+++..+ |.+.++++|+ ..|+.....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999988666666555 2368999998 355543210
Q ss_pred ------CCCeEEEeCCCCC-CC---------CCceEeeehhhhcCC---ChhHHHHHHHHHHHHhccC
Q 038208 175 ------TDNLKYIAGDMFQ-FV---------PPADAFLFKLVFHGL---GDEDGLKILKKRREAIASN 223 (228)
Q Consensus 175 ------~~rv~~~~gD~~~-~~---------p~~D~v~~~~vlh~~---~d~~~~~il~~~~~aL~pg 223 (228)
.-+++|.+.|+++ .. |..++|.+-++++-+ +..+..++|.++-..++||
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~G 235 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPG 235 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCC
Confidence 2358999999987 22 236899888887753 4567789999999999998
No 254
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.64 E-value=0.024 Score=49.27 Aligned_cols=49 Identities=29% Similarity=0.491 Sum_probs=37.7
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDM 185 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~ 185 (228)
..|||+=||.|.++..+++.. -+++++|. +++++.|++ .++++|+.++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 389999999999999999875 46999998 888887764 57899998764
No 255
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.60 E-value=0.028 Score=45.19 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ 187 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~ 187 (228)
....|+|.-||-|.-.+.++.++|. ++.+|+ |.-|.-|+. .+||+|++||++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 6789999999999999999999876 677888 766666654 6799999999976
No 256
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.42 E-value=0.045 Score=48.05 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC----C---CceEe
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGI-KCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV----P---PADAF 195 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~----p---~~D~v 195 (228)
...+|||+=|=||.++...+.. +. ++|.+|+ ...++-+++ ..++.++.+|.|+-+ . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4789999999999999998886 44 7999999 677776654 577999999998832 2 39999
Q ss_pred eehhh------hcCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLV------FHGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~v------lh~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
++==. =.-|+ ..+-..++..+.+.|+|||+
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCE
Confidence 76211 11132 23456789999999999975
No 257
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.33 E-value=0.014 Score=46.46 Aligned_cols=87 Identities=21% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAG-DMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~g-D~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
.+.++||+|.|.|..+..++..+.+ +..-++ ..|..+.++ .+.+++.. +..+.--.+|+|.+.++|--.-++ -
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 4689999999999999888765543 333344 334444443 12222211 111111138999999999655555 7
Q ss_pred HHHHHHHHHhcc-CC
Q 038208 211 KILKKRREAIAS-NG 224 (228)
Q Consensus 211 ~il~~~~~aL~p-gG 224 (228)
++|+.++.+|+| +|
T Consensus 187 kLL~Di~~vl~psng 201 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNG 201 (288)
T ss_pred HHHHHHHHHhccCCC
Confidence 899999999998 53
No 258
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.26 E-value=0.42 Score=41.16 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=67.2
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeC-CCCC-CCCC--ceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAG-DMFQ-FVPP--ADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~g-D~~~-~~p~--~D~v~~~~v 200 (228)
.....|+|==||||.++++..-- ++++++.|+ ..++..++. .+...++.. |+.. |+++ +|.|..=--
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 45669999999999999987765 788999999 678877765 244555555 8877 7775 787754221
Q ss_pred ------hcCC-ChhHHHHHHHHHHHHhccCC
Q 038208 201 ------FHGL-GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 201 ------lh~~-~d~~~~~il~~~~~aL~pgG 224 (228)
..-- -++--.++|..+.+.|++||
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG 304 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGG 304 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence 2211 25667889999999999986
No 259
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.25 E-value=0.13 Score=43.39 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=52.9
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLPE-----TDNLKYIAGDMFQ 187 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~ 187 (228)
.+.++ .+. .......||.==|.|.++..|++++|+.. ++++|. |.+++.+++ .+|++++.++|.+
T Consensus 13 ~E~i~-~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVE-LLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHH-hcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 44455 443 34568999999999999999999999765 999999 899988875 6799999998754
No 260
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.18 E-value=0.2 Score=40.10 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=46.7
Q ss_pred cCCCeEEEecC---CCcHHHHHHHHHC-CCCeEEEeec-h-HHHhcCCC----CCCeEEEeCCCCCC-----CC----Cc
Q 038208 132 EGLGSLVDVGG---GNGSFSRIISEAF-PGIKCTVLDL-P-HVVANLPE----TDNLKYIAGDMFQF-----VP----PA 192 (228)
Q Consensus 132 ~~~~~vlDvGg---G~G~~~~~l~~~~-p~~~~~~~Dl-p-~~i~~a~~----~~rv~~~~gD~~~~-----~p----~~ 192 (228)
-++.+|+++|- |+-.+...+++.. ++.+++++|+ . ..-..+.+ .+||+++.||...+ .. ..
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 35889999995 4445555666776 8889999998 2 22222222 48999999998652 11 11
Q ss_pred -eEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 193 -DAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 193 -D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
-++++-..=|.+ +.+.+.|+.....++||+
T Consensus 111 ~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 111 HPVLVILDSSHTH--EHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp SSEEEEESS------SSHHHHHHHHHHT--TT-
T ss_pred CceEEEECCCccH--HHHHHHHHHhCccCCCCC
Confidence 223333344444 335788888888888884
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.17 E-value=0.2 Score=40.98 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=52.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCC-----ceEeeehhhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----TDNLKYIAGDMFQFVPP-----ADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----~~rv~~~~gD~~~~~p~-----~D~v~~~~vl 201 (228)
..++||=||=.. ..+.+++-.++..+++++|+ +.+++-+++ .-.|+.+..|+..++|. ||+++.-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 467899898444 44555666677789999999 566654432 44599999999998873 899876432
Q ss_pred cCCChhHHHHHHHHHHHHhccCC
Q 038208 202 HGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pgG 224 (228)
+..+...-++.+..++||.-|
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT
T ss_pred --CCHHHHHHHHHHHHHHhCCCC
Confidence 455777888999999998665
No 262
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.92 E-value=0.26 Score=39.86 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=66.2
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCC------CCceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-P----HVVANLPETDNLKYIAGDMFQFV------PPADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-p----~~i~~a~~~~rv~~~~gD~~~~~------p~~D~v~~~ 198 (228)
+.+..+||-+|..+|.....+..-- |+-.+.+++. | +.+..+++..||--+-.|...|. +..|+++.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 5678899999999999999998865 5778899988 5 44555666899998999998752 237887653
Q ss_pred hhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 199 LVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
-. .+++++-++.|+..-||+||
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~gG 172 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKPGG 172 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEEEE
T ss_pred CC----ChHHHHHHHHHHHhhccCCc
Confidence 32 24677888999999999996
No 263
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.84 E-value=0.088 Score=42.66 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=65.1
Q ss_pred hccCCCeEEEecCCCcHHHHHHHHHCCC------C---eEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC-
Q 038208 130 IFEGLGSLVDVGGGNGSFSRIISEAFPG------I---KCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VP- 190 (228)
Q Consensus 130 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~------~---~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p- 190 (228)
.+.+..++||+....|.|+.-+.++.-+ - +++.+||..|.. .+.|.-+.+|+.++ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 3567889999999999999888775321 1 289999966654 57888899999772 23
Q ss_pred -CceEeeehh-----hhcCCChhHHHH----HHHHHHHHhccCCC
Q 038208 191 -PADAFLFKL-----VFHGLGDEDGLK----ILKKRREAIASNGE 225 (228)
Q Consensus 191 -~~D~v~~~~-----vlh~~~d~~~~~----il~~~~~aL~pgG~ 225 (228)
.+|+|++-. -||++.+=...+ .|.-....|+|||+
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~ 158 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGS 158 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCe
Confidence 289998753 478776532223 34455677899975
No 264
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.76 E-value=0.28 Score=40.39 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCeEEEeCCCCCC------CCC-ce
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPE------------TDNLKYIAGDMFQF------VPP-AD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~------------~~rv~~~~gD~~~~------~p~-~D 193 (228)
....+|++|+|+|..++..+. ....+++.-|+|.+++..+. ...|....-+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999955555444 45778999999877765432 23566655555442 234 89
Q ss_pred EeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 194 AFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 194 ~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
+++.+.+++.-..- ..++.-++.-|.-+
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~~ 192 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAKD 192 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhcC
Confidence 99999998754321 33444444444433
No 265
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.68 E-value=0.19 Score=39.55 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC---CceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQF---VP---PADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~~---~p---~~D~v~~~ 198 (228)
...++||+=+|+|.++.+.+.|. ..+++.+|. ...+..+++ ..+++++..|...- .+ .||+|++=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46899999999999999999986 346888887 555544432 58899999988741 11 39999987
Q ss_pred hhhcC-CChhHHHHHHHHHHHHhccCCC
Q 038208 199 LVFHG-LGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 199 ~vlh~-~~d~~~~~il~~~~~aL~pgG~ 225 (228)
=..+. ..+.+...++-.-...|+|+|.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~ 149 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGAL 149 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcE
Confidence 66651 2222222223234556788753
No 266
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.45 E-value=0.52 Score=41.04 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=65.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCC--CeEEEeec-hHHHhcCC----C--CCCeEEEeCCCCC---CCC--C-ceEe
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPG--IKCTVLDL-PHVVANLP----E--TDNLKYIAGDMFQ---FVP--P-ADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~----~--~~rv~~~~gD~~~---~~p--~-~D~v 195 (228)
.....+|||...+.|.=+..+++.-++ ..++.+|. +.-+...+ . ..++..+..|... ..+ + ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 356799999999999999999998776 55689998 54443332 2 4557778777643 223 2 8888
Q ss_pred ee------hhhh-------cCCChh-------HHHHHHHHHHHHhccCCC
Q 038208 196 LF------KLVF-------HGLGDE-------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~------~~vl-------h~~~d~-------~~~~il~~~~~aL~pgG~ 225 (228)
++ ..++ ..|..+ ...+||+.+.+.|||||.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~ 283 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGV 283 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 64 1233 334433 236789999999999974
No 267
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.22 E-value=0.094 Score=44.19 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=64.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC------CCceEee
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDMFQFV------PPADAFL 196 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~~~~~------p~~D~v~ 196 (228)
....+|||+=|=+|.++...+.. -..+++.+|. ...++.+++ .++++++..|.++.+ ..||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999987664 3457999999 677776653 478999999998732 2499997
Q ss_pred ehhh---hcCCC-hhHHHHHHHHHHHHhccCCC
Q 038208 197 FKLV---FHGLG-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 ~~~v---lh~~~-d~~~~~il~~~~~aL~pgG~ 225 (228)
+-=. =..+. ..+-.++++++.+.|+|||.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 5211 01121 23446789999999999974
No 268
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=0.12 Score=39.09 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCce
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-FVPPAD 193 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~~p~~D 193 (228)
+..+.+|+|.|.|....+.++.. -...+++++ |..+.-++- ..+..|..-|+++ ++.++.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~ 140 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYR 140 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccc
Confidence 45899999999999998888875 456789999 776654431 5677888888877 555543
No 269
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.84 E-value=0.46 Score=40.36 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEee---------------c-------hHHH---------hcCCC--------
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLD---------------L-------PHVV---------ANLPE-------- 174 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D---------------l-------p~~i---------~~a~~-------- 174 (228)
..++|-=|||.|.++..|+...+.+++-=+- + |-+. ++.++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 5689999999999999999988876542110 0 1000 01111
Q ss_pred ------CCCeEEEeCCCCC--CCC----CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ------TDNLKYIAGDMFQ--FVP----PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ------~~rv~~~~gD~~~--~~p----~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+..+...|||.+ ..+ .+|+|+..+.+- .-.....-|+.|...|||||+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGv 291 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGV 291 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcE
Confidence 2345567899987 233 289998886552 223457889999999999985
No 270
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.63 Score=37.97 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=60.7
Q ss_pred HHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeC-CCCCC----CC-CceE
Q 038208 123 VKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL--PHVVANLPETDNLKYIAG-DMFQF----VP-PADA 194 (228)
Q Consensus 123 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~~~~rv~~~~g-D~~~~----~p-~~D~ 194 (228)
++ .|. ...+...+||||..||.|+.-++++. ..++.++|. .+.....+..+||..+.. |+..- +. ..|+
T Consensus 71 le-~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 71 LE-EFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HH-hcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 44 444 22467899999999999999999973 346888887 455556666788777665 55431 22 2455
Q ss_pred eeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 195 FLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 195 v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
+++--.+ .....+|-.+...++|++
T Consensus 148 ~v~DvSF-----ISL~~iLp~l~~l~~~~~ 172 (245)
T COG1189 148 IVIDVSF-----ISLKLILPALLLLLKDGG 172 (245)
T ss_pred EEEEeeh-----hhHHHHHHHHHHhcCCCc
Confidence 5432221 223567777777777764
No 271
>PRK10742 putative methyltransferase; Provisional
Probab=92.44 E-value=0.31 Score=40.12 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=52.9
Q ss_pred HHHHHHhhhhhccCCC--eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------------C--CCCeEEE
Q 038208 120 SFVVKAECKQIFEGLG--SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP-------------E--TDNLKYI 181 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------~--~~rv~~~ 181 (228)
+.+++ +.. +.+.. +|||.=+|.|..+..++.+ +.+++.+|. |.+....+ . ..|++++
T Consensus 76 ~~l~k-Avg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAK-AVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHH-HhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 44566 554 44444 9999999999999999998 777999998 54332211 1 1579999
Q ss_pred eCCCCCC---CC-CceEeeeh
Q 038208 182 AGDMFQF---VP-PADAFLFK 198 (228)
Q Consensus 182 ~gD~~~~---~p-~~D~v~~~ 198 (228)
.+|..+- .+ .||+|++=
T Consensus 151 ~~da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYLD 171 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEEC
Confidence 9998662 33 48999864
No 272
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.96 E-value=0.28 Score=41.56 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCeEEEecCCCcH-HHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC--C--CceEe
Q 038208 134 LGSLVDVGGGNGS-FSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAG----DMFQFV--P--PADAF 195 (228)
Q Consensus 134 ~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~g----D~~~~~--p--~~D~v 195 (228)
..++||||+|... |...-++.| +-++++.|+ +..++.|++ .++|+++.. +++..+ + .+|+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5689999999875 445445554 889999999 777776653 578888644 345432 2 29999
Q ss_pred eehhhhcCCChh
Q 038208 196 LFKLVFHGLGDE 207 (228)
Q Consensus 196 ~~~~vlh~~~d~ 207 (228)
+++=-+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 998888876554
No 273
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.95 E-value=0.31 Score=42.57 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=61.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEe---echHHHhcCC-------------CCCCeEEEeCCCCCC------
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVL---DLPHVVANLP-------------ETDNLKYIAGDMFQF------ 188 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~---Dlp~~i~~a~-------------~~~rv~~~~gD~~~~------ 188 (228)
+......+|+|+|.|......+...-..+-+++ |-|.-++... ....++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 345688999999999988877765543344444 4444333222 145689999999873
Q ss_pred CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 189 VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 189 ~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.+++++++++++. ++++...++= ++..-+++|
T Consensus 270 ~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~g 301 (419)
T KOG3924|consen 270 QTEATVIFVNNVA--FDPELKLRSK-EILQKCKDG 301 (419)
T ss_pred hhcceEEEEeccc--CCHHHHHhhH-HHHhhCCCc
Confidence 2469999999988 5666555544 666666665
No 274
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.37 E-value=0.06 Score=40.94 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=38.1
Q ss_pred eEEEeCCCCC-CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 178 LKYIAGDMFQ-FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 178 v~~~~gD~~~-~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+.+++.-.++ .+. ..|+|+..||+-++.-++-...++.+++.|||||.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~ 81 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGK 81 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcE
Confidence 4444443333 444 49999999999999988889999999999999974
No 275
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=91.28 E-value=0.99 Score=34.12 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ 187 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~ 187 (228)
..-|+|+|=|+|..=..+.+.+|+-++.++|..-..--..-.+.-.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999972111111113445577788866
No 276
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.21 E-value=0.28 Score=43.47 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCC--ceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ-F-VPP--ADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~-~-~p~--~D~v~~~~v 200 (228)
+...|||||.|+|.++...+++..+ .++.++. ..|.+.|++ .++|+++.---.+ . .|. +|+++.-.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3467999999999999998888744 4888887 777776664 6778877654433 2 233 777766655
Q ss_pred hcCCChhHHHHHHHHHHHHhcc
Q 038208 201 FHGLGDEDGLKILKKRREAIAS 222 (228)
Q Consensus 201 lh~~~d~~~~~il~~~~~aL~p 222 (228)
...+--+.+..-++.+++.|..
T Consensus 145 dtEligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhhhccccchhHHHHHHHhcc
Confidence 5555555566677777777743
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.77 E-value=0.28 Score=44.09 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=60.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCC-eEEEeCCCCCC---CC-CceEeeehhhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P----HVVANLPETDN-LKYIAGDMFQF---VP-PADAFLFKLVF 201 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p----~~i~~a~~~~r-v~~~~gD~~~~---~p-~~D~v~~~~vl 201 (228)
...+.|+|...|.|.|+.+|.+. | +.++.. | ..+..+ .+| ..-+-+|..++ +| .+|++...+++
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vI--ydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVI--YDRGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhh--hhcccchhccchhhccCCCCcchhheehhhhh
Confidence 45689999999999999999764 2 444443 2 222222 122 22244566664 45 39999999999
Q ss_pred cCCChh-HHHHHHHHHHHHhccCCC
Q 038208 202 HGLGDE-DGLKILKKRREAIASNGE 225 (228)
Q Consensus 202 h~~~d~-~~~~il~~~~~aL~pgG~ 225 (228)
..+.+. +...||-++-+.|+|+|-
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~ 462 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGW 462 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCce
Confidence 887643 556889999999999974
No 278
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=90.41 E-value=0.21 Score=30.46 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=27.5
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeec
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKT 47 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~ 47 (228)
+.|++.|...++++|+.| +|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 467888888777788888 99999999999986
No 279
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.19 E-value=0.99 Score=40.53 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=65.5
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEeCCCCC-CCC--CceEeeehhhhcCC-C
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL-----PETDNLKYIAGDMFQ-FVP--PADAFLFKLVFHGL-G 205 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-----~~~~rv~~~~gD~~~-~~p--~~D~v~~~~vlh~~-~ 205 (228)
+++-+|||.-.+...+-+.. --.++-+|. +.+++.. ++.+-..+...|+.. .++ +||+++....++.+ .
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 89999999998888777652 223677788 4444432 235668889999987 566 59999999999975 3
Q ss_pred hhHH-------HHHHHHHHHHhccCCC
Q 038208 206 DEDG-------LKILKKRREAIASNGE 225 (228)
Q Consensus 206 d~~~-------~~il~~~~~aL~pgG~ 225 (228)
|++. -..+..+.+.|+|||.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 4332 2357899999999964
No 280
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.23 E-value=4.5 Score=29.24 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=53.1
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C---CCceEeeehhhhcCCCh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQF-V---PPADAFLFKLVFHGLGD 206 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~-~---p~~D~v~~~~vlh~~~d 206 (228)
.....+|++||-|.=......++++ +..+++.|+.+- .+ ...++++.-|+++| . .++|+|++-. |+
T Consensus 11 e~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 11 ENARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred HhcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 3456799999988877555444443 377899998433 22 47899999999996 2 3689888654 33
Q ss_pred hHHHHHHHHHHHHh
Q 038208 207 EDGLKILKKRREAI 220 (228)
Q Consensus 207 ~~~~~il~~~~~aL 220 (228)
.+...-+-.+.+++
T Consensus 81 pEl~~~ildva~aV 94 (129)
T COG1255 81 PELQSAILDVAKAV 94 (129)
T ss_pred HHHHHHHHHHHHhh
Confidence 44444444555544
No 281
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=88.90 E-value=1.3 Score=37.36 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=65.6
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CCC-ceEeee
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP-GIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQF----VPP-ADAFLF 197 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~~----~p~-~D~v~~ 197 (228)
.....+|||..++.|.=+..+++..+ ..+++..|+ +.-+...++ ..++.....|..+. .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34567899999999999999999887 678999998 555544332 56788887887652 223 888865
Q ss_pred ------hhhhcCCCh--------------hHHHHHHHHHHHHh----ccCCC
Q 038208 198 ------KLVFHGLGD--------------EDGLKILKKRREAI----ASNGE 225 (228)
Q Consensus 198 ------~~vlh~~~d--------------~~~~~il~~~~~aL----~pgG~ 225 (228)
..++..-++ ..-.+||+++.+.+ +|||.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 112222222 12357899999999 99964
No 282
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=87.57 E-value=1 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=33.9
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTAS 61 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~ 61 (228)
-+.|++.|...++++|+.| +|+.|+..|++++... ++.|.+++.
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~---~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQ---NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCC---CCceeecHH
Confidence 3567888877535788887 8999999999998742 567988874
No 283
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.43 E-value=0.17 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred ceEeeehhh---hc-CCChhHHHHHHHHHHHHhccCCC
Q 038208 192 ADAFLFKLV---FH-GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 192 ~D~v~~~~v---lh-~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
||+|++..| +| +|.|+...++++++++.|+|||.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~ 39 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGI 39 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCE
Confidence 788876554 33 58899999999999999999973
No 284
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=86.73 E-value=0.77 Score=39.64 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=43.7
Q ss_pred ccCCCeEEEecCCCcHHHHHHHH--------HC--------CCCeEEEeechH-----HHhcCCC-------CCC--eEE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISE--------AF--------PGIKCTVLDLPH-----VVANLPE-------TDN--LKY 180 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~--------~~--------p~~~~~~~Dlp~-----~i~~a~~-------~~r--v~~ 180 (228)
.++.-+|+|+||.+|..+..+.. ++ |.+++..-|+|. +...... ..+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 34567999999999997764432 32 346788889863 1111111 122 556
Q ss_pred EeCCCCC-CCCC--ceEeeehhhhcCCC
Q 038208 181 IAGDMFQ-FVPP--ADAFLFKLVFHGLG 205 (228)
Q Consensus 181 ~~gD~~~-~~p~--~D~v~~~~vlh~~~ 205 (228)
++|.|.. -+|. .|+++.++.||.++
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred cCchhhhccCCCCceEEEEEechhhhcc
Confidence 7889988 4673 89999999999664
No 285
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.57 E-value=2.3 Score=34.06 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=69.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCCC------CceEeeehh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-P----HVVANLPETDNLKYIAGDMFQFVP------PADAFLFKL 199 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p----~~i~~a~~~~rv~~~~gD~~~~~p------~~D~v~~~~ 199 (228)
+.+..+||=+|..+|.....+..-.++-.+.+++. | +.++.+++.+|+-=+-+|...|.. ..|+++.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 67889999999999999999999888777888887 4 455566667888888889977532 3677653
Q ss_pred hhcCC-ChhHHHHHHHHHHHHhccCC
Q 038208 200 VFHGL-GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 200 vlh~~-~d~~~~~il~~~~~aL~pgG 224 (228)
|. .++++.-+.+|+..-||+||
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhcccCC
Confidence 33 35677778889999999997
No 286
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=86.55 E-value=1.4 Score=30.38 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.6
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhhhCC
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKEN 69 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~~ 69 (228)
-+-.|...|+++... .|.|++|+.++.+...+
T Consensus 60 a~~~L~~aGli~~~~----rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 60 ARSYLKKAGLIERPK----RGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHHHCCCccCCC----CCceEECHhHHHHHhhC
Confidence 567899999999876 68999999998555443
No 287
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.45 E-value=4.4 Score=29.76 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=34.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC----CCceEeeehhh
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFV----PPADAFLFKLV 200 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~----p~~D~v~~~~v 200 (228)
.+..++++||=|.=.-....++++ +..+++.|+ |. .+ ...+.++.-|+++|- .++|+|++.+.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 456699999977766544444443 488999998 44 22 378999999999963 36899988763
No 288
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=86.21 E-value=0.55 Score=38.87 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 147 FSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 147 ~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
++.++.++.|+.+++++|. +..++.+.+..-+.-...+ .+.+.++|+|++.- |.+....+++++...+++|.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCc
Confidence 4678889999999999999 7777776443333333333 22355689998865 55778899999999888874
No 289
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.06 E-value=1.3 Score=36.74 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=31.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-----CCCeEEEeec
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-----PGIKCTVLDL 165 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl 165 (228)
+.+...++|+|||.|.++..+++.. +...++++|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4567799999999999999999998 5678999997
No 290
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.99 E-value=1.1 Score=39.33 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCCC---CCC--CceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 TDNLKYIAGDMFQ---FVP--PADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ~~rv~~~~gD~~~---~~p--~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.+||+++.+++.+ ..| .+|.+++..+.-.+++++...+++.+.++++|||.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaR 329 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGAR 329 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCE
Confidence 6899999999876 343 49999999999888999999999999999999963
No 291
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.96 E-value=1.8 Score=35.65 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCC--------CeEEEeec
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPG--------IKCTVLDL 165 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl 165 (228)
.-+|+++|+|+|.++..+++.... +++++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 479999999999999998885443 47999998
No 292
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.88 E-value=3 Score=32.15 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=54.9
Q ss_pred EecCCCcHHHHHHHHHCC-C--CeEEEeec-hHHHhcCCC---------CCCeEEEeC-CCCC--C-C--C--CceEeee
Q 038208 139 DVGGGNGSFSRIISEAFP-G--IKCTVLDL-PHVVANLPE---------TDNLKYIAG-DMFQ--F-V--P--PADAFLF 197 (228)
Q Consensus 139 DvGgG~G~~~~~l~~~~p-~--~~~~~~Dl-p~~i~~a~~---------~~rv~~~~g-D~~~--~-~--p--~~D~v~~ 197 (228)
=||=|.=.++.+|++.++ . +..|.+|- .++.+.-.. ...++++.+ |..+ . . . .||.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888889999999987 3 44677776 334433321 344544444 6655 1 2 2 3999998
Q ss_pred hhhhcCC-----------ChhHHHHHHHHHHHHhccCCC
Q 038208 198 KLVFHGL-----------GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 198 ~~vlh~~-----------~d~~~~~il~~~~~aL~pgG~ 225 (228)
++...-. +.+-...+|+.+...|+++|.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~ 120 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGE 120 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 8765541 123345567888888999864
No 293
>PRK11569 transcriptional repressor IclR; Provisional
Probab=84.66 E-value=1.5 Score=36.56 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=36.3
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
-+.|++.|.+...|+|+.| +|..|+..|+++++.. .+.|++.+..
T Consensus 30 al~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 88 (274)
T PRK11569 30 GLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE---LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEecCHHH
Confidence 3567888887657899998 9999999999998642 6889998754
No 294
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.45 E-value=2.2 Score=37.08 Aligned_cols=62 Identities=21% Similarity=0.454 Sum_probs=42.0
Q ss_pred CccHHHHHHHHHHhccchhHHHHHHHhhhhh-ccCCCeEEEecCCCcHHHHHHHHH----CC----CCeEEEeec-hHHH
Q 038208 100 NPGINQRFNEAMASDSEIMTSFVVKAECKQI-FEGLGSLVDVGGGNGSFSRIISEA----FP----GIKCTVLDL-PHVV 169 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~Dl-p~~i 169 (228)
.|+..+.|...++ .++++ .++.. .+.+..+|+||.|+|.++.-|++. +| .+++.+++. |...
T Consensus 51 Apels~lFGella-------~~~~~-~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 51 APELSQLFGELLA-------EQFLQ-LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred chhHHHHHHHHHH-------HHHHH-HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 5788888877653 33444 33311 234578999999999998877764 45 457888887 4443
No 295
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=84.26 E-value=1.4 Score=36.22 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=34.4
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
+.|+++|...+.++++.| +|..|+..|++++++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~---~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPE---DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEeehHHH
Confidence 567888887434456777 9999999999999973 5689999743
No 296
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.04 E-value=3.8 Score=34.88 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeechHHHhcCC----C------------------------CCCeEE
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDLPHVVANLP----E------------------------TDNLKY 180 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dlp~~i~~a~----~------------------------~~rv~~ 180 (228)
..+...||-+|||.-.+...+...+ +.++++-+|.|++++.-- + ..|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4677899999999999999999988 788999999988775311 0 355666
Q ss_pred EeCCCCC--CC----------CC-ceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 181 IAGDMFQ--FV----------PP-ADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 181 ~~gD~~~--~~----------p~-~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
...|... ++ ++ +-+++.--+|.+.+++++..+++.+.+..+..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a 220 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENA 220 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcc
Confidence 6667653 11 11 45667777899999999999999998866543
No 297
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=83.90 E-value=1.5 Score=36.01 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=35.9
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhch
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST 63 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~ 63 (228)
-+.|++.|.....|+|+.| +|..|+..|+++++ ++.|++++...
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~ 68 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHH
Confidence 3567888877557899998 99999999999986 58899998543
No 298
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=83.25 E-value=1.8 Score=36.10 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=36.1
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
-+.|++.|...+.++|+.| +|..|+..|+|++++. .+.|+++...
T Consensus 27 ~l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 85 (271)
T PRK10163 27 GIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ---LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEEecHHH
Confidence 4567888887656789888 9999999999988743 6789998743
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.71 E-value=8.8 Score=33.48 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=56.2
Q ss_pred ccCCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCC-CCCC---C-C--CceEeeeh
Q 038208 131 FEGLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYI---AGD-MFQF---V-P--PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~---~gD-~~~~---~-p--~~D~v~~~ 198 (228)
+....+|+.+|+|. |..+..++++....++++.|. ++..+.+++...+.++ ..+ +.+. . + ++|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 44567899999988 889999999986546888887 6666655432122222 221 2111 1 1 36776542
Q ss_pred ---------------hhhcCCChhHHHHHHHHHHHHhccCC
Q 038208 199 ---------------LVFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ---------------~vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
++|+-.++. ...++.+.+.|+|+|
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G 300 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGG 300 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCC
Confidence 122222333 457888899999986
No 300
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=81.15 E-value=2.3 Score=35.19 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhchhh
Q 038208 14 IELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLL 65 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l 65 (228)
--+.|++.|...++++|+.| +|+.|+..|++++... ++.|++++....|
T Consensus 12 ral~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~---~~~Y~Lg~~~~~l 74 (263)
T PRK09834 12 RGLMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSAS---DDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC---CCcEEEcHHHHHH
Confidence 34567888876555689888 9999999999998743 5789999755433
No 301
>PTZ00357 methyltransferase; Provisional
Probab=80.29 E-value=8 Score=36.75 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=74.2
Q ss_pred CChhhhcccCccHHHHHHHHHHhcc-chhH-----------HHH------HHHhhhhhc--cCCCeEEEecCCCcHHHHH
Q 038208 91 IKFWEFLNQNPGINQRFNEAMASDS-EIMT-----------SFV------VKAECKQIF--EGLGSLVDVGGGNGSFSRI 150 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~f~~~m~~~~-~~~~-----------~~~------~~~~~~~~~--~~~~~vlDvGgG~G~~~~~ 150 (228)
...||.+++++-..+.|.+++...- .+.. ..+ +. ..+..- .....|+-||+|.|-+...
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~md-rvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQ-RVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccc-ccccccCCCceEEEEEEcCCccHHHHH
Confidence 3457888899988888988876432 1100 000 00 001000 1124689999999998887
Q ss_pred HHHHCC----CCeEEEeec-hHHH----hcC-C--C--------CCCeEEEeCCCCC-CCC-------------CceEee
Q 038208 151 ISEAFP----GIKCTVLDL-PHVV----ANL-P--E--------TDNLKYIAGDMFQ-FVP-------------PADAFL 196 (228)
Q Consensus 151 l~~~~p----~~~~~~~Dl-p~~i----~~a-~--~--------~~rv~~~~gD~~~-~~p-------------~~D~v~ 196 (228)
.++..- .+++.+++- |..+ .+- . . .++|+++..|+.+ ..+ .+|+++
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV 797 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence 776543 356777775 4421 111 1 1 3579999999987 222 278775
Q ss_pred ehhhhcCCCh-hHHHHHHHHHHHHhcc
Q 038208 197 FKLVFHGLGD-EDGLKILKKRREAIAS 222 (228)
Q Consensus 197 ~~~vlh~~~d-~~~~~il~~~~~aL~p 222 (228)
. -.|-.|.| |-...-|..+.+-||+
T Consensus 798 S-ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 798 S-ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred H-hhhcccccccCCHHHHHHHHHhhhh
Confidence 4 34444543 3334456666666665
No 302
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.20 E-value=5.3 Score=33.82 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=47.1
Q ss_pred CCeEEEecCCC-c-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 134 LGSLVDVGGGN-G-SFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 134 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+...++|+|++.-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788888775 2 34444444433347899998 55555544321111111222112345888876653 33345
Q ss_pred HHHHHHHHHhccCC
Q 038208 211 KILKKRREAIASNG 224 (228)
Q Consensus 211 ~il~~~~~aL~pgG 224 (228)
.+++.+...++||.
T Consensus 81 ~v~~~l~~~l~~~~ 94 (307)
T PRK07502 81 AVAAEIAPHLKPGA 94 (307)
T ss_pred HHHHHHHhhCCCCC
Confidence 66777777777764
No 303
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.49 E-value=4.4 Score=35.05 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=55.2
Q ss_pred ccCCCeEEEec-CCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC---CCCCCCCC-ceEeeehhhhcCC
Q 038208 131 FEGLGSLVDVG-GGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAG---DMFQFVPP-ADAFLFKLVFHGL 204 (228)
Q Consensus 131 ~~~~~~vlDvG-gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~g---D~~~~~p~-~D~v~~~~vlh~~ 204 (228)
..+..+|+=+| ||-|+.+.++++..- .+++++|. ++-.+.+++...-.++.. |..+..++ +|+++-.-.-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~--- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGP--- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCCh---
Confidence 34567777777 467889999999765 99999999 676777776444444443 33333333 8888765441
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 038208 205 GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG 224 (228)
.-+....++|++||
T Consensus 240 ------~~~~~~l~~l~~~G 253 (339)
T COG1064 240 ------ATLEPSLKALRRGG 253 (339)
T ss_pred ------hhHHHHHHHHhcCC
Confidence 22456667778885
No 304
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.33 E-value=6.5 Score=32.82 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=46.0
Q ss_pred eEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHH
Q 038208 136 SLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKI 212 (228)
Q Consensus 136 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~i 212 (228)
+|.=||+|. |.++..+.++ +.+++++|. ++.++.+.....+.....+. +...++|+|++.- |+....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 355577654 3444555444 467999998 66666554322222111111 1233588888764 45666778
Q ss_pred HHHHHHHhccC
Q 038208 213 LKKRREAIASN 223 (228)
Q Consensus 213 l~~~~~aL~pg 223 (228)
++++...++|+
T Consensus 74 ~~~l~~~l~~~ 84 (279)
T PRK07417 74 SEQLIPALPPE 84 (279)
T ss_pred HHHHHHhCCCC
Confidence 88888877765
No 305
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=78.27 E-value=3 Score=34.37 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.9
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
-+.|++.|... +++|+.| +|+.|+..|++++... ++.|.+++..
T Consensus 16 ~l~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~---~~~Y~lG~~~ 73 (257)
T PRK15090 16 VFGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGE---SEKYSLTLKL 73 (257)
T ss_pred HHHHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEEecHHH
Confidence 35677777765 5889888 9999999999998642 5889999744
No 306
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.11 E-value=3 Score=32.95 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=29.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL 172 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a 172 (228)
.....|||-=||+|..+.+..+. +.+++++|+ |..++.|
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHh
Confidence 45789999999999999998887 567999999 7776654
No 307
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=74.00 E-value=5.4 Score=25.17 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=28.6
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccC--CCCCeEeCChh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVN--GQEEAYGLTAS 61 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~--~~~~~~~~t~~ 61 (228)
++-+...|....++++..+ .++.|...|++++.... .+...|++|+.
T Consensus 5 q~~vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 5 QWQVLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp HHHHHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred HHHHHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 3444555552225777666 89999999999877532 13346888875
No 308
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=73.55 E-value=14 Score=33.79 Aligned_cols=88 Identities=9% Similarity=0.145 Sum_probs=55.1
Q ss_pred CCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC------------------CCC------
Q 038208 133 GLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAG------------------DMF------ 186 (228)
Q Consensus 133 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~g------------------D~~------ 186 (228)
...+|+=+|+|. |..+...++..- .+++++|. ++..+.+++. ..+++.- |+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 468999999886 556667777764 58999999 8877777651 1222111 110
Q ss_pred -CC-CCCceEeeehhhhcCCChhHHHHH-HHHHHHHhccCCC
Q 038208 187 -QF-VPPADAFLFKLVFHGLGDEDGLKI-LKKRREAIASNGE 225 (228)
Q Consensus 187 -~~-~p~~D~v~~~~vlh~~~d~~~~~i-l~~~~~aL~pgG~ 225 (228)
.+ ..++|+++-.--. +...+..+ .+...+.|+|||+
T Consensus 242 ~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgv 280 (509)
T PRK09424 242 FAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSV 280 (509)
T ss_pred HHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCE
Confidence 00 1358888765532 22212234 5999999999975
No 309
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=73.16 E-value=4.8 Score=33.24 Aligned_cols=91 Identities=19% Similarity=0.287 Sum_probs=50.4
Q ss_pred CCeEEEecCCCcHHHHH---HHHHC--CCCeEEEeec----hHHHhc---------------------------CCC---
Q 038208 134 LGSLVDVGGGNGSFSRI---ISEAF--PGIKCTVLDL----PHVVAN---------------------------LPE--- 174 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~---l~~~~--p~~~~~~~Dl----p~~i~~---------------------------a~~--- 174 (228)
+.-|+++|+=.|..+.. +++.+ ++-++.++|- |+.-.. ...
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 57999999988876654 44443 5667999994 332210 000
Q ss_pred -CCCeEEEeCCCCCCCCC--ceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 -TDNLKYIAGDMFQFVPP--ADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 -~~rv~~~~gD~~~~~p~--~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.++|+++.|.|.+.+|. .+-|-+.++=.||-+. ....|..++.-|.|||+
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~GGi 207 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSPGGI 207 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEEEEE
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCCCeE
Confidence 36899999999765553 2222222222245444 47889999999999975
No 310
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=73.03 E-value=7.5 Score=34.16 Aligned_cols=35 Identities=34% Similarity=0.758 Sum_probs=29.9
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP 166 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp 166 (228)
+.+...|+|||.|.|+++.-+.-.| ++++.++|-.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 5578899999999999998877765 8899999974
No 311
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=72.72 E-value=4.1 Score=37.92 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=58.8
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCe-EEEeechHHHhcCCCCCCeEEEeCCCCCC---CC--------CceEee--
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIK-CTVLDLPHVVANLPETDNLKYIAGDMFQF---VP--------PADAFL-- 196 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---~p--------~~D~v~-- 196 (228)
+.....|||+||.+|.|+.-.++..|-.. ++++||-.+- ..++|.....|+.++ ++ .+|+|+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----p~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhD 117 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----PIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHD 117 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----cCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeec
Confidence 46778999999999999999999998554 7999984332 246666667777552 11 267774
Q ss_pred -ehhhhcCCChh------HHHHHHHHHHHHhccCCC
Q 038208 197 -FKLVFHGLGDE------DGLKILKKRREAIASNGE 225 (228)
Q Consensus 197 -~~~vlh~~~d~------~~~~il~~~~~aL~pgG~ 225 (228)
+.+|--.|..+ -....|+-+..-|+-||+
T Consensus 118 gapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~ 153 (780)
T KOG1098|consen 118 GAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGT 153 (780)
T ss_pred CCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCc
Confidence 33444445322 223345555666666654
No 312
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=72.71 E-value=4.9 Score=30.11 Aligned_cols=65 Identities=28% Similarity=0.383 Sum_probs=43.7
Q ss_pred eEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCCC--ceEeeehhhhcCCC---------hhHHHHHHHHH
Q 038208 159 KCTVLDL-PHVVANLPE-------TDNLKYIAGDMFQ---FVPP--ADAFLFKLVFHGLG---------DEDGLKILKKR 216 (228)
Q Consensus 159 ~~~~~Dl-p~~i~~a~~-------~~rv~~~~gD~~~---~~p~--~D~v~~~~vlh~~~---------d~~~~~il~~~ 216 (228)
++.+||+ ++.++..++ .+||+++..+=.+ .+++ .|+++++-- ++| .+.-...|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 788876653 4689998875433 2443 788876642 222 24567789999
Q ss_pred HHHhccCCC
Q 038208 217 REAIASNGE 225 (228)
Q Consensus 217 ~~aL~pgG~ 225 (228)
.+.|+|||.
T Consensus 79 l~lL~~gG~ 87 (140)
T PF06962_consen 79 LELLKPGGI 87 (140)
T ss_dssp HHHEEEEEE
T ss_pred HHhhccCCE
Confidence 999999974
No 313
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.57 E-value=3.4 Score=29.18 Aligned_cols=71 Identities=34% Similarity=0.430 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--C-----CCceEeeehhhhcCCChhHHHH
Q 038208 142 GGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF--V-----PPADAFLFKLVFHGLGDEDGLK 211 (228)
Q Consensus 142 gG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~--~-----p~~D~v~~~~vlh~~~d~~~~~ 211 (228)
||.|.++..+++.. .+.+++++|. ++.++.+++ ..+.++.||..++ + ..++.+++..- +|+.+..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 55567777777654 3347999998 777777664 3388999999873 2 13676654432 4555555
Q ss_pred HHHHHH
Q 038208 212 ILKKRR 217 (228)
Q Consensus 212 il~~~~ 217 (228)
+...++
T Consensus 79 ~~~~~r 84 (116)
T PF02254_consen 79 IALLAR 84 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 314
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=72.02 E-value=5.4 Score=33.32 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=46.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCCCCeEEEeCCCCC----C-CCCceEeeehhhhcCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLPETDNLKYIAGDMFQ----F-VPPADAFLFKLVFHGLG 205 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~----~-~p~~D~v~~~~vlh~~~ 205 (228)
+++|+-||.|.+...+.+.. .+ +..+|+ +..++..+..-.-.++.+|+.+ . .+.+|+++.......++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 68999999999999988874 54 577898 6666544431111256777765 1 34589998877655443
No 315
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=71.85 E-value=9 Score=33.15 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=57.2
Q ss_pred CeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCC-CCC---CC--C-CceEeeehhhhc
Q 038208 135 GSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPE---TDNLKYIAGD-MFQ---FV--P-PADAFLFKLVFH 202 (228)
Q Consensus 135 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---~~rv~~~~gD-~~~---~~--p-~~D~v~~~~vlh 202 (228)
.+|+=+|+|+ |.++..+++.+...++++.|. +.-++.|++ .+.+.....+ ... .. . ++|+++=..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 4899999997 777788999998899999999 888888765 1222222221 111 11 2 4898875543
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
....++.+.++++|||.
T Consensus 248 ------~~~~~~~ai~~~r~gG~ 264 (350)
T COG1063 248 ------SPPALDQALEALRPGGT 264 (350)
T ss_pred ------CHHHHHHHHHHhcCCCE
Confidence 13368889999999975
No 316
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=70.37 E-value=5.1 Score=34.35 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=39.9
Q ss_pred eEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------CCCeEEEeCCCCCCCCCceEe
Q 038208 136 SLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------TDNLKYIAGDMFQFVPPADAF 195 (228)
Q Consensus 136 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-----------------~~rv~~~~gD~~~~~p~~D~v 195 (228)
+|+-||.|. |-...-++.++|+++++++|+ ..-+..-.. ..+=-|..-|+.+.+.++|+|
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlv 82 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLV 82 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceE
Confidence 577788774 556677888999999999998 344433221 222234444544445568888
Q ss_pred eeh
Q 038208 196 LFK 198 (228)
Q Consensus 196 ~~~ 198 (228)
+.+
T Consensus 83 fis 85 (481)
T KOG2666|consen 83 FIS 85 (481)
T ss_pred EEE
Confidence 654
No 317
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.32 E-value=5.5 Score=32.58 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=44.1
Q ss_pred HHHHHHhhhhhccCC--CeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcC-C----------C-----CCCeEEE
Q 038208 120 SFVVKAECKQIFEGL--GSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANL-P----------E-----TDNLKYI 181 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a-~----------~-----~~rv~~~ 181 (228)
+.+++ +.. +.+. .+|||.=+|-|.-+.-++.. +.++++++...++... + + ..|++++
T Consensus 63 ~~l~k-A~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLAK-AVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHHH-HTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHHH-HhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 44566 554 3333 49999999999999888765 6789999985444321 1 1 2589999
Q ss_pred eCCCCCC--CC--CceEeeehhhhc
Q 038208 182 AGDMFQF--VP--PADAFLFKLVFH 202 (228)
Q Consensus 182 ~gD~~~~--~p--~~D~v~~~~vlh 202 (228)
.+|..+- .+ .+|+|++==.+.
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE--S--
T ss_pred cCCHHHHHhhcCCCCCEEEECCCCC
Confidence 9998873 32 499998755443
No 318
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=69.30 E-value=9.5 Score=27.03 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=23.7
Q ss_pred cChhhHhhhCCCCcCHHH-------------------HHHHHHhCCceeecc
Q 038208 16 LSIADIIHCHGRAITLSE-------------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e-------------------ll~~L~~~g~l~~~~ 48 (228)
.-|++.|...+++.|++| .|+.|+..|++.+..
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 345666665445667666 788999999998865
No 319
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=68.42 E-value=4.6 Score=33.85 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=28.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHH
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVV 169 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i 169 (228)
...+|||+|||+|.-........ ..++..+|. .+++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 56899999999999888877764 267888888 4555
No 320
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=68.19 E-value=9.7 Score=32.02 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=54.1
Q ss_pred CeEEEecCC--CcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCC-CCCCCCceEeeehhhhcCCChhHHH
Q 038208 135 GSLVDVGGG--NGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDM-FQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 135 ~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~-~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
.+|+=+|.| -|.++..+.++.+...+++.|. ...++.+.+.+-+.-...+. ......+|+|+++- |-....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAV-----PIEATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEec-----cHHHHH
Confidence 355666654 3567777777888888899998 55555554322222222233 23455689998875 445667
Q ss_pred HHHHHHHHHhccC
Q 038208 211 KILKKRREAIASN 223 (228)
Q Consensus 211 ~il~~~~~aL~pg 223 (228)
.+++++...|+||
T Consensus 79 ~~l~~l~~~l~~g 91 (279)
T COG0287 79 EVLKELAPHLKKG 91 (279)
T ss_pred HHHHHhcccCCCC
Confidence 8899999888887
No 321
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=67.58 E-value=9.5 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.6
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhh
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLL 65 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l 65 (228)
.|+.|...|+++.. ++.|.+|+-+..+
T Consensus 39 yL~~L~~~gLI~~~-----~~~Y~lTekG~~~ 65 (77)
T PF14947_consen 39 YLKELEEKGLIKKK-----DGKYRLTEKGKEF 65 (77)
T ss_dssp HHHHHHHTTSEEEE-----TTEEEE-HHHHHH
T ss_pred HHHHHHHCcCeeCC-----CCEEEECccHHHH
Confidence 89999999999875 6999999988743
No 322
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=67.56 E-value=41 Score=25.47 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=51.0
Q ss_pred ecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC------CCCceEeeehhhhcCCChhHHH
Q 038208 140 VGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF------VPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 140 vGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~------~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
|=|++|..+..+++.. .+.+++++-. ++-.+. ..+++.+.+|+.++ +.++|.++..-.- +..+ .
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~--~~~~--~ 75 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP--PPKD--V 75 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS--TTTH--H
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh--hccc--c
Confidence 3467788777776643 2367777765 443333 68999999999873 2358877665522 2222 6
Q ss_pred HHHHHHHHHhccCCC
Q 038208 211 KILKKRREAIASNGE 225 (228)
Q Consensus 211 ~il~~~~~aL~pgG~ 225 (228)
...+++.++++..|+
T Consensus 76 ~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 76 DAAKNIIEAAKKAGV 90 (183)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred ccccccccccccccc
Confidence 677788888876653
No 323
>PF02981 FokI_N: Restriction endonuclease FokI, recognition domain; InterPro: IPR004234 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition and cleavage functions (IPR004233 from INTERPRO), respectively. The recognition domain is made of three smaller subdomains (D1, D2 and D3) which are evolutionarily related to the helix-turn-helix-containing DNA-binding domain of the catabolite gene activator protein CAP []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=67.12 E-value=6.6 Score=29.35 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=26.3
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhhh
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK 67 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~ 67 (228)
+||..+++||++.... .++|+.|..++.++.
T Consensus 112 flrwAvslgfl~~~~~---~Dtf~IT~lG~~~~~ 142 (145)
T PF02981_consen 112 FLRWAVSLGFLDYDRE---TDTFSITELGKKYVK 142 (145)
T ss_dssp HHHHHHHTTSEEEETT---TTEEEE-HHHHHHHH
T ss_pred eeeeeeeeCceeeccC---CCEEEeehhHHHHhh
Confidence 9999999999998865 799999999986653
No 324
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=66.79 E-value=14 Score=30.76 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=42.7
Q ss_pred HHHHHHHcChhhHhhhCCCCcCHHH-----------H---HHHHHhCCceeecccCCCCCeEeCChhchhhhhC
Q 038208 9 SLKCAIELSIADIIHCHGRAITLSE-----------L---MRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKE 68 (228)
Q Consensus 9 ~L~~a~~lglfd~L~~~~~p~t~~e-----------l---l~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~ 68 (228)
.+....+.+|+=.|.+ +|.|.+| + ++-|...|++.++ ++.|++|..++.++..
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~-----~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQE-----GDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEec-----CCEEEecchHHHHHHH
Confidence 3445567888888988 7999999 3 4677899999999 5999999999977643
No 325
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=66.42 E-value=22 Score=29.47 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=63.4
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHC-CCCeEEEeec-----hHHHhcCCCCCCeEEEeCCCCCCCC------CceEeeeh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAF-PGIKCTVLDL-----PHVVANLPETDNLKYIAGDMFQFVP------PADAFLFK 198 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-----p~~i~~a~~~~rv~~~~gD~~~~~p------~~D~v~~~ 198 (228)
+....+||-+|.++|.....+..-- |+--+..++. -+.+..|++..+|.-+.-|...|.. -.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 3567899999999999887776643 6666666665 2466667777888888888876643 1455543
Q ss_pred hhhcCC-ChhHHHHHHHHHHHHhccCC
Q 038208 199 LVFHGL-GDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 199 ~vlh~~-~d~~~~~il~~~~~aL~pgG 224 (228)
|. ++++++.+.-++..-||+||
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~gG 255 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKNGG 255 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhccCC
Confidence 43 35566777788999999996
No 326
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=65.86 E-value=12 Score=29.03 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHcChhh----HhhhCC-CCcCHHH---HHHHHHhCCceeecccCCCCCeEeCChhch
Q 038208 2 FNHLSSMSLKCAIELSIAD----IIHCHG-RAITLSE---LMRLLVHSGCFNKTKVNGQEEAYGLTASST 63 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd----~L~~~~-~p~t~~e---ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~ 63 (228)
+.-|...+++..+.+.=|+ .|+..- .++|.+| -|+.|..+|++++.. +|.|..|..+-
T Consensus 21 ~~~W~~~~ir~l~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~----~g~y~~t~~~l 86 (171)
T PF14394_consen 21 YSSWYHPAIRELLPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDG----DGKYVQTDKSL 86 (171)
T ss_pred HhhhHHHHHHHHhhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECC----CCcEEEeccee
Confidence 3457777888888777665 344321 4788888 899999999999997 67998887543
No 327
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=65.73 E-value=30 Score=28.09 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCCeEEEecCCCcHHHH--HHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeehh
Q 038208 133 GLGSLVDVGGGNGSFSR--IISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~~ 199 (228)
+..+||=||||.=..-. .|++...+++++.-++ |++.+.+. ..+++++..++.. .+.++++|+...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEECC
Confidence 46789999999877653 4445444555555566 55544333 5789999888865 455678777664
No 328
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=65.71 E-value=19 Score=27.37 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=37.9
Q ss_pred CCCeEEEecCCCcHH--HHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSF--SRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~--~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
...+||=||||.=.. +..|++. +.++++++ |+..+...+.+.+++....+.+ .+.++|+++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEEC
Confidence 568899999986544 3345554 45666665 4433333333466666666654 45678888774
No 329
>PRK08507 prephenate dehydrogenase; Validated
Probab=64.53 E-value=15 Score=30.49 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=44.5
Q ss_pred eEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHH
Q 038208 136 SLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKI 212 (228)
Q Consensus 136 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~i 212 (228)
+|.=||+|. +.++..+.++....+++++|. ++.++.+.+..-+.. ..+. .+...+|+|++.- |+.....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEeC-----cHHHHHHH
Confidence 455677665 445555555544457888998 555554433221111 1121 1223478887754 55666777
Q ss_pred HHHHHHHhccC
Q 038208 213 LKKRREAIASN 223 (228)
Q Consensus 213 l~~~~~aL~pg 223 (228)
++++.. ++|+
T Consensus 75 ~~~l~~-l~~~ 84 (275)
T PRK08507 75 LPKLLD-IKEN 84 (275)
T ss_pred HHHHhc-cCCC
Confidence 777777 7665
No 330
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=64.17 E-value=20 Score=28.55 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=40.1
Q ss_pred CCCeEEEecCCCcHHH--HHHHHHCCCCeEEEeec---hHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFS--RIISEAFPGIKCTVLDL---PHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~--~~l~~~~p~~~~~~~Dl---p~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
...+||=||||.=... ..+++. +.++++++- ++..+.+ +..+++++.+++.. .+.++|+|+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 3568999999875443 344443 456777764 2333222 24589999998865 45678887765
No 331
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=64.08 E-value=14 Score=32.43 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhccCCCeEEEecCCCcHH----HHHHHHHC---CCCeEEEeechH-----HHhcCCC---------CCC
Q 038208 119 TSFVVKAECKQIFEGLGSLVDVGGGNGSF----SRIISEAF---PGIKCTVLDLPH-----VVANLPE---------TDN 177 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~----~~~l~~~~---p~~~~~~~Dlp~-----~i~~a~~---------~~r 177 (228)
.+.+++ .+. -.+.-.|+|+|-|.|.. ..+++++. |.+++|+++.|. .++.+.. .-.
T Consensus 99 NqaIle-A~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~ 175 (374)
T PF03514_consen 99 NQAILE-AFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP 175 (374)
T ss_pred hHHHHH-Hhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc
Confidence 355666 554 34567899999999973 34555543 678999999843 2222211 223
Q ss_pred eEEEeC--CCCCCC--------C-CceEeeehhhhcCCChh------HHHHHHHHHHHHhccC
Q 038208 178 LKYIAG--DMFQFV--------P-PADAFLFKLVFHGLGDE------DGLKILKKRREAIASN 223 (228)
Q Consensus 178 v~~~~g--D~~~~~--------p-~~D~v~~~~vlh~~~d~------~~~~il~~~~~aL~pg 223 (228)
.+|... +-.+++ + ++=+|.+...||+..++ ....+|+.++ .|+|.
T Consensus 176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~ 237 (374)
T PF03514_consen 176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK 237 (374)
T ss_pred EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC
Confidence 444442 222211 1 35566677778887632 2344665554 77775
No 332
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=63.83 E-value=16 Score=23.50 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHcChhhHhhhCCC-CcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCCh
Q 038208 13 AIELSIADIIHCHGR-AITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTA 60 (228)
Q Consensus 13 a~~lglfd~L~~~~~-p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~ 60 (228)
..+-.|++.|...++ ++|+.| .|..|...|+++.... .++.|.++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~--~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGG--TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC--CCCceEeec
Confidence 456678888988754 288887 8899999999998641 136777654
No 333
>PRK11524 putative methyltransferase; Provisional
Probab=63.56 E-value=15 Score=30.85 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=33.6
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP 173 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 173 (228)
.....|||-=||+|..+.+..+. +-+++++|+ ++.++.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGL 247 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHH
Confidence 35789999999999999987776 677999999 77777665
No 334
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=62.57 E-value=18 Score=30.38 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=40.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIAGDMFQ 187 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~ 187 (228)
+.+.-.-+|+|.-.|.++-.+.++ ++.++.+|--.+.+..-...+|+.+..|-|+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk 263 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFK 263 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcc
Confidence 445678999999999999999998 7999999975444443334555555555554
No 335
>PRK09273 hypothetical protein; Provisional
Probab=61.69 E-value=7.5 Score=31.16 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=35.9
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIA 182 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~ 182 (228)
++.....=++||||.=..-.+.++|++++-.+--|.....++...+.+.++
T Consensus 61 ~g~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~ 111 (211)
T PRK09273 61 SKAVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALS 111 (211)
T ss_pred cCCCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 444556678999999999999999999976655466665555544444443
No 336
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=59.96 E-value=23 Score=30.41 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=57.7
Q ss_pred CCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC---CCCCceEeeehhhhcCCCh
Q 038208 134 LGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ---FVPPADAFLFKLVFHGLGD 206 (228)
Q Consensus 134 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~---~~p~~D~v~~~~vlh~~~d 206 (228)
..+|+-||||. |.-+..++-- =+.+++++|+ ..-+.+... ..|++..--+... .++.+|+++-.-.+---.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788899885 5556665543 3568999998 555555443 5677777655533 3567898875443332222
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 038208 207 EDGLKILKKRREAIASNGE 225 (228)
Q Consensus 207 ~~~~~il~~~~~aL~pgG~ 225 (228)
+ .-+.++....||||.+
T Consensus 247 P--kLvt~e~vk~MkpGsV 263 (371)
T COG0686 247 P--KLVTREMVKQMKPGSV 263 (371)
T ss_pred c--eehhHHHHHhcCCCcE
Confidence 3 3567888999999964
No 337
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=59.52 E-value=31 Score=29.20 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=88.4
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhhhCCCCChHHhhccCCCCccccccCCChhh----------hcccCccH
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKENPFSLSSWFKGTELTLWGTVHGIKFWE----------FLNQNPGI 103 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~ 103 (228)
+++.|...|++..+. +...+|..++.++..-.. . +.... .-......|.++.+ +..+.|+-
T Consensus 54 i~~~l~~egiv~~~~-----g~v~~TekG~E~~e~~gi--~-~~~~~-~C~~CeGrgi~l~~f~dll~kf~eiaK~RP~p 124 (354)
T COG1568 54 ILEILEDEGIVKIEE-----GGVELTEKGEELAEELGI--K-KKYDY-TCECCEGRGISLQAFKDLLEKFREIAKDRPEP 124 (354)
T ss_pred HHHHHHhcCcEEEec-----CcEeehhhhHHHHHHhCC--C-ccccc-cccCcCCccccchhHHHHHHHHHHHHhcCCCc
Confidence 999999999999994 668999998876642110 0 00000 01112223333322 22222322
Q ss_pred HHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech-HHHhcCC----C--CC
Q 038208 104 NQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP-HVVANLP----E--TD 176 (228)
Q Consensus 104 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~----~--~~ 176 (228)
...|.+........... ++= .++..--..+.|+=+| -.-.++.+++-..-.-++.++|+. ..+.-.. + -.
T Consensus 125 ~~~yDQgfvTpEttv~R-v~l-m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~ 201 (354)
T COG1568 125 LHQYDQGFVTPETTVSR-VAL-MYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN 201 (354)
T ss_pred chhcccccccccceeee-eee-eccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc
Confidence 22222221110000000 000 1110011345688888 555555555554434478999994 4443222 2 56
Q ss_pred CeEEEeCCCCCCCCC-----ceEeeehhhhcCCCh--hHHHHHHHHHHHHhccC
Q 038208 177 NLKYIAGDMFQFVPP-----ADAFLFKLVFHGLGD--EDGLKILKKRREAIASN 223 (228)
Q Consensus 177 rv~~~~gD~~~~~p~-----~D~v~~~~vlh~~~d--~~~~~il~~~~~aL~pg 223 (228)
+++.+..|..+|+|+ ||+++. +-|. .....+|.+=..+||--
T Consensus 202 ~ie~~~~Dlr~plpe~~~~kFDvfiT-----DPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 202 NIEAFVFDLRNPLPEDLKRKFDVFIT-----DPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred chhheeehhcccChHHHHhhCCeeec-----CchhhHHHHHHHHhccHHHhcCC
Confidence 799999999999984 888753 2221 23344566666677544
No 338
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=59.36 E-value=19 Score=23.08 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=28.4
Q ss_pred hhhHhhhCCCCcCHHH-------------------HHHHHHhCCceeecccCCCCCeEeCChhch
Q 038208 18 IADIIHCHGRAITLSE-------------------LMRLLVHSGCFNKTKVNGQEEAYGLTASST 63 (228)
Q Consensus 18 lfd~L~~~~~p~t~~e-------------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~ 63 (228)
|++.|.+.+.|++..+ -|++|...|++++.. .+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g----~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG----RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC----CcccccCHHHH
Confidence 4566666656776554 789999999777664 34456776554
No 339
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=58.17 E-value=13 Score=27.18 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=35.1
Q ss_pred HHHcChhhHhhhCCCCcCHHH------------------HHHHHHhCCceeecccCCCCCeEeCChh
Q 038208 13 AIELSIADIIHCHGRAITLSE------------------LMRLLVHSGCFNKTKVNGQEEAYGLTAS 61 (228)
Q Consensus 13 a~~lglfd~L~~~~~p~t~~e------------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~ 61 (228)
+.|+-|.++|-.. +|+|+.| +|+-|+..|++..... ++.|..+|+
T Consensus 6 ~aE~eVM~ilW~~-~~~t~~eI~~~l~~~~ews~sTV~TLl~RL~KKg~l~~~kd---gr~~~y~pL 68 (123)
T COG3682 6 AAEWEVMEILWSR-GPATVREIIEELPADREWSYSTVKTLLNRLVKKGLLTRKKD---GRAFRYSPL 68 (123)
T ss_pred HHHHHHHHHHHHc-CCccHHHHHHHHhhcccccHHHHHHHHHHHHhccchhhhhc---CCeeeeecc
Confidence 4678888888887 5888888 8888999999987763 566777763
No 340
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=57.85 E-value=22 Score=32.66 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCCeEEEecCCCc-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCC------------------CC-----
Q 038208 133 GLGSLVDVGGGNG-SFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDM------------------FQ----- 187 (228)
Q Consensus 133 ~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~------------------~~----- 187 (228)
...+++=+|+|.= ..+..+++.. +.+++++|. +...+.++. -..+++.-|. .+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 3579999998765 5566666664 456899998 666666654 1222322222 10
Q ss_pred ---CCCCceEeeehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 188 ---FVPPADAFLFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 188 ---~~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
...++|+++..-.+.--+.+ .-+.++..+.||||++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsv 279 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSV 279 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCE
Confidence 12358999544433322222 3577888999999964
No 341
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=57.78 E-value=11 Score=28.33 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=32.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYI 181 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~ 181 (228)
..-=+.||||.=..-.+.++|++++..+--+.....+++..+.+.+
T Consensus 58 ~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNvl 103 (143)
T TIGR01120 58 DGGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHNDANVL 103 (143)
T ss_pred ceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEE
Confidence 3344569999988888999999998776656666666664443333
No 342
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=57.39 E-value=9.1 Score=32.51 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=42.5
Q ss_pred CCCeEEEeCCCCCC-----CCCceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 175 TDNLKYIAGDMFQF-----VPPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 175 ~~rv~~~~gD~~~~-----~p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
..||.++.+|+.+- ....|-|++..+--..+|.+...++.++.+.+.||
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~g 359 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAG 359 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCC
Confidence 67899999999762 23589999999988789999999999999999887
No 343
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=56.14 E-value=17 Score=30.66 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCe----EEEeechHHHhcCCCCCCeEEEeCCCCCC----CC---CceEeeehhh
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIK----CTVLDLPHVVANLPETDNLKYIAGDMFQF----VP---PADAFLFKLV 200 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~----~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~----~p---~~D~v~~~~v 200 (228)
+..+||=+|.+.|.+..-|.+.+|+++ .+++|-.......++..+|+++..=+.++ +. .-++++++.+
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~fftee~~~~~~~~~~~~illISDI 136 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQRFFTEEYARRLRDKLNLKILLISDI 136 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES---HHHHHHHHHHHTTEEEEEE--
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehhhCCHHHHHHHHhhcCCCeEEEEec
Confidence 457899999999999999999999865 89999844444455555687776544332 11 1267777766
No 344
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=55.99 E-value=12 Score=28.24 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=34.2
Q ss_pred ecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCC--CeEEEeCCCC
Q 038208 140 VGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETD--NLKYIAGDMF 186 (228)
Q Consensus 140 vGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~--rv~~~~gD~~ 186 (228)
+-||||.=..-.+.++|++++..+--+.....+++.. +|-.+.+.+.
T Consensus 64 liCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~i 112 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHNNANVLALGARVI 112 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECcccc
Confidence 4599999888899999999987776677777777644 4444444443
No 345
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=55.72 E-value=13 Score=28.08 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=34.0
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCC--CeEEEeCCC
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETD--NLKYIAGDM 185 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~--rv~~~~gD~ 185 (228)
-=+.||||.=..-.+.++|++++..+--+.....+++.. +|-.+.+.+
T Consensus 59 GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ 108 (144)
T TIGR00689 59 GILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVLCLGSRV 108 (144)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 345699999999999999999987666577666666633 444444444
No 346
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.37 E-value=22 Score=30.29 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=43.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCeE-EEeec-hHHHhcCCC-CCCeEEEeCCCCC----CCCCceEeeehhhhcCCC
Q 038208 137 LVDVGGGNGSFSRIISEAFPGIKC-TVLDL-PHVVANLPE-TDNLKYIAGDMFQ----FVPPADAFLFKLVFHGLG 205 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p~~~~-~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~----~~p~~D~v~~~~vlh~~~ 205 (228)
|+|+=||.|.+...+.+.. .++ ..+|+ +..++..+. .+. .+..+|+.+ .+|+.|+++.......|+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 5899999999999998764 564 45887 555543332 122 455678765 256688887776655554
No 347
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=55.33 E-value=35 Score=28.18 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCeEEEec-CCCcHHHHHHHHHCCCCeEEEeechHH
Q 038208 134 LGSLVDVG-GGNGSFSRIISEAFPGIKCTVLDLPHV 168 (228)
Q Consensus 134 ~~~vlDvG-gG~G~~~~~l~~~~p~~~~~~~Dlp~~ 168 (228)
..+|+-|| ||-|.|+.+.+.|.-=-+.+++|...+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 56788888 788999998888865557888887543
No 348
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.32 E-value=21 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHcChhhHhhhCCCCcCHHH-------------------HHHHHHhCCceeecc
Q 038208 14 IELSIADIIHCHGRAITLSE-------------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e-------------------ll~~L~~~g~l~~~~ 48 (228)
-++.|++.|..++++.|+++ .|+.|+..|++.+..
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 35567777776656677776 789999999999875
No 349
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=55.23 E-value=14 Score=23.01 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=32.7
Q ss_pred HHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 7 SMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 7 ~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
..+|.--.++.|++.|... +|+|+.| =|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 4566667889999999444 6999888 578899999998875
No 350
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=55.10 E-value=31 Score=26.50 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=32.8
Q ss_pred HHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChh
Q 038208 7 SMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTAS 61 (228)
Q Consensus 7 ~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~ 61 (228)
-.+|++.+.+. ....++|+|+++ +|..|...||+.... +.+|.|.+..-
T Consensus 8 ~yAl~~l~~lA----~~~~~~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~r--G~~GGy~Lar~ 70 (164)
T PRK10857 8 RYAVTAMLDVA----LNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVR--GPGGGYLLGKD 70 (164)
T ss_pred HHHHHHHHHHH----hCCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC--CCCCCeeccCC
Confidence 34555555555 122225888887 999999999999753 23567887653
No 351
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.94 E-value=14 Score=28.91 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=23.6
Q ss_pred ceEeeehhhhcCCCh----------hHHHHHHHHHHHHhccC
Q 038208 192 ADAFLFKLVFHGLGD----------EDGLKILKKRREAIASN 223 (228)
Q Consensus 192 ~D~v~~~~vlh~~~d----------~~~~~il~~~~~aL~pg 223 (228)
.|+|+++++|||++- +...+++.++.+.|+|.
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~ 92 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIE 92 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCc
Confidence 699999999999854 34456666777766554
No 352
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=53.98 E-value=13 Score=35.17 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCeEEEecCCCcHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcC----------------------CC-
Q 038208 134 LGSLVDVGGGNGSFSRIISEAF-------P-----GIKCTVLDL-P---HVVANL----------------------PE- 174 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~-------p-----~~~~~~~Dl-p---~~i~~a----------------------~~- 174 (228)
.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+ ..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999666665444 4 367888885 3 111111 00
Q ss_pred ------CC--CeEEEeCCCCCC---CC-CceEeeehh-----hhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 175 ------TD--NLKYIAGDMFQF---VP-PADAFLFKL-----VFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 ------~~--rv~~~~gD~~~~---~p-~~D~v~~~~-----vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
.. ++++..||+.+- +. .+|++++=- .-..|++ .+|+++++.++|||.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~----~~~~~l~~~~~~~~~ 201 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSP----NLFNALARLARPGAT 201 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccH----HHHHHHHHHhCCCCE
Confidence 12 355677888653 32 388887542 1122554 589999999999964
No 353
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=53.87 E-value=20 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=19.7
Q ss_pred CCcCHHH---HHHHHHhCCceeecccCCCCCeEeC
Q 038208 27 RAITLSE---LMRLLVHSGCFNKTKVNGQEEAYGL 58 (228)
Q Consensus 27 ~p~t~~e---ll~~L~~~g~l~~~~~~~~~~~~~~ 58 (228)
.+.|.+| +|..++..|.++.. +|.|++
T Consensus 31 ~~~s~~eL~~fL~~lv~e~~L~~~-----~G~YkL 60 (60)
T PF08672_consen 31 YDISLEELQEFLDRLVEEGKLECS-----GGSYKL 60 (60)
T ss_dssp TT--HHHHHHHHHHHHHTTSEE-------TTEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCcEEec-----CCEEeC
Confidence 5778777 99999999999999 588874
No 354
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=53.70 E-value=17 Score=24.61 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=23.2
Q ss_pred HHHHHHhCCceeecccCC--CCCeEeCChhchhhh
Q 038208 34 LMRLLVHSGCFNKTKVNG--QEEAYGLTASSTLLI 66 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~--~~~~~~~t~~~~~l~ 66 (228)
-|+.|...|++++..... ..-.|++|+.+..|.
T Consensus 39 ~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 39 RLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 789999999998864311 123599999888665
No 355
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=53.37 E-value=1.2e+02 Score=24.54 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCCeEEEecCCCc----HHHHHHHHHCCCCeEEEe--echH---HHhcCCC---CCCeEEEeCCCCC----CCCCceEee
Q 038208 133 GLGSLVDVGGGNG----SFSRIISEAFPGIKCTVL--DLPH---VVANLPE---TDNLKYIAGDMFQ----FVPPADAFL 196 (228)
Q Consensus 133 ~~~~vlDvGgG~G----~~~~~l~~~~p~~~~~~~--Dlp~---~i~~a~~---~~rv~~~~gD~~~----~~p~~D~v~ 196 (228)
+.+.+|++.++.| .++...+.+..+-+.+.+ |..+ ..+.... .+-++|+.||-.+ .+.+.|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 5678999864432 455566666666664433 3222 1111211 4567999888543 244688876
Q ss_pred ehhhhcCCChhHHH-HHHHHHH
Q 038208 197 FKLVFHGLGDEDGL-KILKKRR 217 (228)
Q Consensus 197 ~~~vlh~~~d~~~~-~il~~~~ 217 (228)
+ |...++.. ++|+-+.
T Consensus 121 V-----Dc~~~d~~~~vl~~~~ 137 (218)
T PF07279_consen 121 V-----DCKREDFAARVLRAAK 137 (218)
T ss_pred E-----eCCchhHHHHHHHHhc
Confidence 5 34445555 6666533
No 356
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=53.26 E-value=22 Score=29.78 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHcChhh----HhhhCC-CCcCHHH---HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 3 NHLSSMSLKCAIELSIAD----IIHCHG-RAITLSE---LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 3 g~~~~~~L~~a~~lglfd----~L~~~~-~p~t~~e---ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
..|...+++..+.+.=++ .|+.-- .++|.+| -|+.|..+|++++.. +|.|..|..+
T Consensus 120 ~~W~~~virel~~~~~~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~----~g~y~~t~~~ 183 (271)
T TIGR02147 120 RHWYNSVIRELLGVMPFADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNE----DGFYKQTDKA 183 (271)
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECC----CCcEEeecce
Confidence 457777888887763332 444432 4588888 899999999999987 7889888653
No 357
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=52.46 E-value=9.8 Score=28.50 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=32.7
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCC--CCeEEEeCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPET--DNLKYIAGDM 185 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~--~rv~~~~gD~ 185 (228)
..-=+.||||.=..-.+.++|++++..+--+.....+++. .+|-.+.+.+
T Consensus 58 d~GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~ 109 (140)
T PF02502_consen 58 DRGILICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDANVLCLGARV 109 (140)
T ss_dssp SEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEEEEETTT
T ss_pred CeEEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCcEEEechhh
Confidence 3455679999999999999999998777667666666653 3454454444
No 358
>PRK13699 putative methylase; Provisional
Probab=52.26 E-value=37 Score=27.50 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=32.4
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLP 173 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 173 (228)
.....|||-=||+|..+.+..+. +.+++++|+ |+..+.+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHH
Confidence 35679999999999999988876 667999999 76666553
No 359
>PHA01634 hypothetical protein
Probab=51.93 E-value=22 Score=26.39 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=29.0
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANL 172 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a 172 (228)
...+|+|||++.|..++.++-+. .-+++.++- |...+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~ 67 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKW 67 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHH
Confidence 57899999999999999998874 235777776 4444433
No 360
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=51.24 E-value=29 Score=23.27 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=31.8
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccC--CCCCeEeCChhchhhh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVN--GQEEAYGLTASSTLLI 66 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~--~~~~~~~~t~~~~~l~ 66 (228)
++.++..|... ++++..+ .++-|+..|++++.... .....|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 45556666554 3455554 89999999999877421 0123577777766444
No 361
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=50.98 E-value=18 Score=32.43 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=26.1
Q ss_pred CeEEEecCC-CcHHHH-HHHHHCCCCeEEEeech
Q 038208 135 GSLVDVGGG-NGSFSR-IISEAFPGIKCTVLDLP 166 (228)
Q Consensus 135 ~~vlDvGgG-~G~~~~-~l~~~~p~~~~~~~Dlp 166 (228)
..|+-||+| +|..+. .|+++.|..+++++|-.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 469999999 788666 67777889999999964
No 362
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=50.67 E-value=23 Score=24.67 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=23.2
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
.++.|+..|++..... ++...|.+|+-+..|.
T Consensus 51 yi~~L~~~Gli~~~~~-~~~~~y~lT~KG~~fl 82 (95)
T COG3432 51 YIEMLVEKGLIIKQDN-GRRKVYELTEKGKRFL 82 (95)
T ss_pred HHHHHHhCCCEEeccC-CccceEEEChhHHHHH
Confidence 9999999997766651 1122699999987443
No 363
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=50.45 E-value=8.6 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 14 IELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
.|..++..|... +++|++| .|+-|...|++++..
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 455667666544 6888887 899999999999885
No 364
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.67 E-value=39 Score=26.83 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCcHHH--HHHHHHCCCCeEEEee--c-hHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFS--RIISEAFPGIKCTVLD--L-PHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~--~~l~~~~p~~~~~~~D--l-p~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
...++|=||||.=... ..+.+.. .++++++ . ++..+.+. ..++.+....+.. .+.++|+++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~-~~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVE-EGKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHh-CCCEEEEecCCChhhcCCceEEEEc
Confidence 4678999998754332 2444443 4566665 3 22222222 3567777666654 46678888775
No 365
>PTZ00325 malate dehydrogenase; Provisional
Probab=49.43 E-value=79 Score=27.16 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=51.5
Q ss_pred CCCeEEEecC-CC-cHHHHHHHHHCC-CCeEEEeechHHHhcCCC----CCCeEEEe----CCCCCCCCCceEeeehhhh
Q 038208 133 GLGSLVDVGG-GN-GSFSRIISEAFP-GIKCTVLDLPHVVANLPE----TDNLKYIA----GDMFQFVPPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGg-G~-G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~~----~~rv~~~~----gD~~~~~p~~D~v~~~~vl 201 (228)
+-.+|.=||+ |. |......+.... .-+++++|++.....+.. ...+.+.. +|..+.+.++|+|+..--.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 4568888986 55 555444443322 236889998221111111 12333332 2223456678988765444
Q ss_pred cCCCh-------hHHHHHHHHHHHHhccCCCCC
Q 038208 202 HGLGD-------EDGLKILKKRREAIASNGERG 227 (228)
Q Consensus 202 h~~~d-------~~~~~il~~~~~aL~pgG~~g 227 (228)
..-+. ..+.++++++.++|+.-|..+
T Consensus 87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ 119 (321)
T PTZ00325 87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKA 119 (321)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 32221 233458888999998877654
No 366
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=49.33 E-value=7.2 Score=34.66 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=45.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-----CCCCceEeeehhhhcCCChh
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQ-----FVPPADAFLFKLVFHGLGDE 207 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~-----~~p~~D~v~~~~vlh~~~d~ 207 (228)
.|+=||+|...+..++.....+.+++++|. +.+-..... ..|+++...+... .++. +--++..+|+.|+.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~-~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGR-NPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TB-TTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhccc-chHHHHHHHhcCCHH
Confidence 477899999888887777767899999997 444333221 4788888733321 1121 222556778888887
Q ss_pred HHHHHHHHH
Q 038208 208 DGLKILKKR 216 (228)
Q Consensus 208 ~~~~il~~~ 216 (228)
+...++++.
T Consensus 81 d~~~ff~~~ 89 (409)
T PF03486_consen 81 DLIAFFEEL 89 (409)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 777777764
No 367
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=49.12 E-value=29 Score=23.87 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=35.6
Q ss_pred HHHHcChhhHhhhC-CCCcCHHH-----------HH-------------HHHHhCCceeecccCCCCCeEeCChhchhh
Q 038208 12 CAIELSIADIIHCH-GRAITLSE-----------LM-------------RLLVHSGCFNKTKVNGQEEAYGLTASSTLL 65 (228)
Q Consensus 12 ~a~~lglfd~L~~~-~~p~t~~e-----------ll-------------~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l 65 (228)
.=++..|+..|... +.+.++.| ++ +.|+.+|++++.....+...|++|+-+..+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~G~~~ 86 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEKGKRI 86 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChhhhhH
Confidence 44677888888876 46777777 22 567889999322211234479999877644
No 368
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.79 E-value=29 Score=32.06 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC
Q 038208 142 GGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF 188 (228)
Q Consensus 142 gG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~ 188 (228)
||.|.++..+++.. .+.+++++|. ++.++.+++ ..+..+.||..++
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~ 471 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANE 471 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCH
Confidence 66677777777754 3467999998 777777764 6789999999874
No 369
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=47.55 E-value=31 Score=25.52 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=18.8
Q ss_pred EecCCCc--HHHHHHH--HHCCCCeEEEeec-hHHH
Q 038208 139 DVGGGNG--SFSRIIS--EAFPGIKCTVLDL-PHVV 169 (228)
Q Consensus 139 DvGgG~G--~~~~~l~--~~~p~~~~~~~Dl-p~~i 169 (228)
|||+..| .....+. +..|..+++.+|- |...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~ 36 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF 36 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence 8999999 5555544 4568899999997 6543
No 370
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=47.52 E-value=8.3 Score=26.75 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=16.0
Q ss_pred EEEecCCCcHHHHHHHHHC-CCCe
Q 038208 137 LVDVGGGNGSFSRIISEAF-PGIK 159 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~-p~~~ 159 (228)
=+|||||.|....+--+.+ ++..
T Consensus 6 NIDIGcG~GNTmda~fRsct~htS 29 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTS 29 (124)
T ss_pred ccccccCCCcchhhhhhccccccc
Confidence 4799999999776655544 3443
No 371
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.07 E-value=30 Score=32.42 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=48.8
Q ss_pred eEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--C-----CCceEeeehhhhcCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF--V-----PPADAFLFKLVFHGLG 205 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~--~-----p~~D~v~~~~vlh~~~ 205 (228)
.|+= ||.|.++..+++.. .+.+++++|. |+.++.+++ .....+.||..++ + .++|+++... -+
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~----~d 474 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC----NE 474 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe----CC
Confidence 4444 56666666666543 3568999998 888887764 5678899999873 1 2477665432 23
Q ss_pred hhHHHHHHHHHHH
Q 038208 206 DEDGLKILKKRRE 218 (228)
Q Consensus 206 d~~~~~il~~~~~ 218 (228)
|+.+..+.+.+++
T Consensus 475 ~~~n~~i~~~~r~ 487 (601)
T PRK03659 475 PEDTMKIVELCQQ 487 (601)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 372
>PRK06545 prephenate dehydrogenase; Validated
Probab=46.91 E-value=58 Score=28.26 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=40.1
Q ss_pred eEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHH
Q 038208 136 SLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKI 212 (228)
Q Consensus 136 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~i 212 (228)
+|.=||.|. |.++..+.++.+++.++..|. +.....+....-+.-...|..+-..++|+|++.- |+.....+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilav-----P~~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAV-----PVDATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeC-----CHHHHHHH
Confidence 455566553 344555555555555555554 2222211111111111111111134589888765 44456777
Q ss_pred HHHHHH-HhccC
Q 038208 213 LKKRRE-AIASN 223 (228)
Q Consensus 213 l~~~~~-aL~pg 223 (228)
++++.. .++|+
T Consensus 77 l~~l~~~~l~~~ 88 (359)
T PRK06545 77 LAELADLELKPG 88 (359)
T ss_pred HHHHhhcCCCCC
Confidence 888876 36765
No 373
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=46.51 E-value=60 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=20.7
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
++..|...|+++... +..|.|.++...
T Consensus 45 il~~L~~~Gli~s~~--G~~GGy~L~~~~ 71 (83)
T PF02082_consen 45 ILQKLKKAGLIESSR--GRGGGYRLARPP 71 (83)
T ss_dssp HHHHHHHTTSEEEET--STTSEEEESS-C
T ss_pred HHHHHhhCCeeEecC--CCCCceeecCCH
Confidence 899999999998765 235788887643
No 374
>CHL00194 ycf39 Ycf39; Provisional
Probab=46.51 E-value=93 Score=26.14 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=36.6
Q ss_pred ecCCCcHHHHHHHHHC--CCCeEEEeech-HHHhcCCCCCCeEEEeCCCCCC------CCCceEeee
Q 038208 140 VGGGNGSFSRIISEAF--PGIKCTVLDLP-HVVANLPETDNLKYIAGDMFQF------VPPADAFLF 197 (228)
Q Consensus 140 vGgG~G~~~~~l~~~~--p~~~~~~~Dlp-~~i~~a~~~~rv~~~~gD~~~~------~p~~D~v~~ 197 (228)
|=||+|..+..++++. .+.++++++.. .-.... ...+++++.+|+.++ +.++|+|+.
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 4478898888877754 34578888763 221111 135799999999763 235787764
No 375
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=46.51 E-value=49 Score=30.21 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=57.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCC----CCeEEEeec-hHHHhcCCC------CC-CeEEEeCCCCC-CCC-------Cc
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFP----GIKCTVLDL-PHVVANLPE------TD-NLKYIAGDMFQ-FVP-------PA 192 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~~------~~-rv~~~~gD~~~-~~p-------~~ 192 (228)
...+|.|-.||+|.++....+..- ++...+++. +.+...++. .+ .+....+|-+. |.. .|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 456999999999998887666542 377899997 555554442 22 34556666554 322 17
Q ss_pred eEeeehhhhc--CCC--------------------hhHH-HHHHHHHHHHhccCC
Q 038208 193 DAFLFKLVFH--GLG--------------------DEDG-LKILKKRREAIASNG 224 (228)
Q Consensus 193 D~v~~~~vlh--~~~--------------------d~~~-~~il~~~~~aL~pgG 224 (228)
|+|+.+--.. .|. .... ...++.+...|+|||
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g 320 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGG 320 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCc
Confidence 7665544332 121 1122 677888888889887
No 376
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=46.35 E-value=22 Score=26.99 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIA 182 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~ 182 (228)
....-=+.||||.=..-.+.+.|++++-.+--+.....+++..+.+.++
T Consensus 58 ~~d~GIliCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~hNnaNvl~ 106 (151)
T COG0698 58 EADLGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLAREHNNANVLC 106 (151)
T ss_pred CCCeeEEEecCChhHHHHhhccCCeEEEEecCHHHHHHHHhcCCCcEEE
Confidence 3444556799999888899999999976665566666666655444444
No 377
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=46.05 E-value=26 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCcCHHHHHHHHHhCCceeecccCCCCCeEeCChhchhhhh
Q 038208 27 RAITLSELMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIK 67 (228)
Q Consensus 27 ~p~t~~ell~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~ 67 (228)
.|-|+.++++-|...|+++..+ .+.+.+|+.++.+..
T Consensus 37 sp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 37 SPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKAK 73 (154)
T ss_pred CcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHHH
Confidence 3566666999999999999987 789999988875543
No 378
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=46.02 E-value=22 Score=27.56 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=32.5
Q ss_pred EEEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 038208 137 LVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYI 181 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~ 181 (228)
.-=+-||||.=..-.+.++|++++..+--+.....+++..+.+++
T Consensus 60 ~GIliCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL 104 (171)
T PRK12615 60 LGVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEELNANVI 104 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEE
Confidence 344569999988888999999997666556666666664444444
No 379
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=45.51 E-value=19 Score=27.19 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=43.2
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCCceEeeehhhh
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------------TDNLKYIAGDMFQFVPPADAFLFKLVF 201 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------------~~rv~~~~gD~~~~~p~~D~v~~~~vl 201 (228)
+|.=||+|....+.+..-..-..++++... ++.++..++ .+++.+ .-|+.+-+.++|++++.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiiav-- 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAV-- 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S--
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecc--
Confidence 355678887776554433333467888887 455543321 223332 233322345688887653
Q ss_pred cCCChhHHHHHHHHHHHHhccC
Q 038208 202 HGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 202 h~~~d~~~~~il~~~~~aL~pg 223 (228)
|....+.+++++...++++
T Consensus 78 ---Ps~~~~~~~~~l~~~l~~~ 96 (157)
T PF01210_consen 78 ---PSQAHREVLEQLAPYLKKG 96 (157)
T ss_dssp ----GGGHHHHHHHHTTTSHTT
T ss_pred ---cHHHHHHHHHHHhhccCCC
Confidence 3334456777777766543
No 380
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=45.24 E-value=40 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=25.4
Q ss_pred HcChhhHhh-hCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 15 ELSIADIIH-CHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 15 ~lglfd~L~-~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
+..++.+|- .+ +|.|.++ -|+-|...|++.++.
T Consensus 29 Dv~v~~~LL~~~-~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEEN-GPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhc-CCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeee
Confidence 455666666 34 7999888 678889999999885
No 381
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=45.20 E-value=23 Score=27.52 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=32.2
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIA 182 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~ 182 (228)
-=+-||||.=..-.+.++|++++..+--+.....++...+.++++
T Consensus 61 GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~hNnaNVL~ 105 (171)
T TIGR01119 61 GVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIG 105 (171)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 334599999888889999999987665566666666644444443
No 382
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.10 E-value=24 Score=25.24 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHcChhhHhhhCCCCcCHHH-------------------HHHHHHhCCceeecccCCCCCeEeCC
Q 038208 14 IELSIADIIHCHGRAITLSE-------------------LMRLLVHSGCFNKTKVNGQEEAYGLT 59 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e-------------------ll~~L~~~g~l~~~~~~~~~~~~~~t 59 (228)
.+.-|++.|.....+.|++| .|+.|...|++.+....++...|...
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~ 73 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELS 73 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEES
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeec
Confidence 34455666665545666665 78899999999987532222345443
No 383
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=44.97 E-value=20 Score=29.17 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=32.0
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeech
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLP 166 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp 166 (228)
.+..+++|.-=|.|..+..|++++|+++..++|..
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrD 76 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRD 76 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccC
Confidence 35789999999999999999999999999999983
No 384
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=44.25 E-value=24 Score=26.78 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCC--CeEEEeCCC
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETD--NLKYIAGDM 185 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~--rv~~~~gD~ 185 (228)
-=+-||+|.=..-.+.++|++++..+--+.....++... +|-.+.+.+
T Consensus 65 GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~lGar~ 114 (151)
T PTZ00215 65 GILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRT 114 (151)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 335699999888899999999987776566666666644 444444444
No 385
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=43.95 E-value=50 Score=23.39 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=36.0
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccC--CCCCeEeCChhchhhhh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVN--GQEEAYGLTASSTLLIK 67 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~--~~~~~~~~t~~~~~l~~ 67 (228)
++.++..|..+ +++|..| +++-|...|++++.... .+.-.+.+|+.++.+..
T Consensus 30 q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 30 QWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 44567777665 4677766 88999999999986421 12336889998875543
No 386
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=43.90 E-value=31 Score=32.53 Aligned_cols=77 Identities=23% Similarity=0.420 Sum_probs=47.6
Q ss_pred CeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--C-----CCceEeeehhhhcCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF--V-----PPADAFLFKLVFHGL 204 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~--~-----p~~D~v~~~~vlh~~ 204 (228)
.+|+=+||| .++..+++.. .+.+++++|. |+.++.+++ .....+.||..++ + ..+|++++.. -
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----~ 473 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI----D 473 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe----C
Confidence 456666655 4444444322 3578999998 777877764 4678899999773 1 2477765543 3
Q ss_pred ChhHHHHHHHHHHH
Q 038208 205 GDEDGLKILKKRRE 218 (228)
Q Consensus 205 ~d~~~~~il~~~~~ 218 (228)
+|+.+..+...+++
T Consensus 474 d~~~n~~i~~~ar~ 487 (621)
T PRK03562 474 DPQTSLQLVELVKE 487 (621)
T ss_pred CHHHHHHHHHHHHH
Confidence 44556666655554
No 387
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=43.79 E-value=14 Score=28.95 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=38.0
Q ss_pred eEEEecCCCcHHHHHHHH---HCCCC---eEEEeec-hHHHhcCCC---------CCCeEEEe-CCCCCCCCCceEeeeh
Q 038208 136 SLVDVGGGNGSFSRIISE---AFPGI---KCTVLDL-PHVVANLPE---------TDNLKYIA-GDMFQFVPPADAFLFK 198 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~---~~p~~---~~~~~Dl-p~~i~~a~~---------~~rv~~~~-gD~~~~~p~~D~v~~~ 198 (228)
++.=||+|+-.+...+.. ..+.+ +++++|+ ++-++.... ...+++.. -|..+.++++|.|+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 466799999988875553 44554 6899998 554443221 34455543 3444457789988764
Q ss_pred h
Q 038208 199 L 199 (228)
Q Consensus 199 ~ 199 (228)
-
T Consensus 81 i 81 (183)
T PF02056_consen 81 I 81 (183)
T ss_dssp -
T ss_pred e
Confidence 3
No 388
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=43.46 E-value=60 Score=27.80 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=33.9
Q ss_pred ecCCCcHHHH----HHHHHCCCCeEEEeec------hHHHhcCCCCCCeEEEeCCCCC
Q 038208 140 VGGGNGSFSR----IISEAFPGIKCTVLDL------PHVVANLPETDNLKYIAGDMFQ 187 (228)
Q Consensus 140 vGgG~G~~~~----~l~~~~p~~~~~~~Dl------p~~i~~a~~~~rv~~~~gD~~~ 187 (228)
|=||.|..+. .+.+++|+.+++++|- ++.+......+|.+|+.+|+..
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 3467776554 5666889988999994 2333333346899999999975
No 389
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=43.38 E-value=33 Score=30.51 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=42.0
Q ss_pred CCeEEEecCCCcHHHHHHHHHCC--CCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--C-----CCceEeee
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFP--GIKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQF--V-----PPADAFLF 197 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~--~-----p~~D~v~~ 197 (228)
..+++=+|+ |.++..+++... +.+++++|. |+.++.+++ ...+.++.||..++ + ..+|.+++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 466777666 677777766552 467899998 777766554 45788899998762 2 24777654
No 390
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=43.34 E-value=49 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=23.8
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
.++.|...|++.+.. .+.|.+|+.+..+.
T Consensus 42 ~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 42 MVQKLDKDEYLIYEK----YRGLVLTPKGKKIG 70 (142)
T ss_pred HHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence 889999999999765 57899999886544
No 391
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=43.18 E-value=53 Score=33.44 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--C--CCceEeeehhhhcCC---
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF--V--PPADAFLFKLVFHGL--- 204 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~--~--p~~D~v~~~~vlh~~--- 204 (228)
....+||+|.|.=.-...+.- |++.++.+|. |.+.....=...-.|+..|+..+ + ..+|.+.+-..|-.-
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP--~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~ 899 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIP--PDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAAS 899 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS---TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHH
T ss_pred CcceEEEccCCccceeeeccC--CCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhc
Confidence 468999999888754433322 4788999998 54443332257789999999884 2 258999888777532
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 038208 205 GDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 205 ~d~~~~~il~~~~~aL~pgG~ 225 (228)
..-.....|+++.+.+++.|+
T Consensus 900 a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 900 ANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp CT--HHHHHHHHHHHHHCTT-
T ss_pred CCCcHHHHHHHHHHHHHhCCc
Confidence 223346677888887777654
No 392
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=43.02 E-value=34 Score=30.77 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=38.1
Q ss_pred eEEEecCCCcHHHHHHHH----H---CCCCeEEEeec-hHHHhcCC----C-----CCCeEEEeC-CCCCCCCCceEeee
Q 038208 136 SLVDVGGGNGSFSRIISE----A---FPGIKCTVLDL-PHVVANLP----E-----TDNLKYIAG-DMFQFVPPADAFLF 197 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~----~---~p~~~~~~~Dl-p~~i~~a~----~-----~~rv~~~~g-D~~~~~p~~D~v~~ 197 (228)
+|.=||+|+. ++..+.+ + .|..+++.+|+ ++-++... . ...+++..- |..+.++++|.|+.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 5778999996 7755443 2 34457999999 54443321 1 234555443 44445778888875
Q ss_pred hh
Q 038208 198 KL 199 (228)
Q Consensus 198 ~~ 199 (228)
..
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 44
No 393
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.02 E-value=83 Score=26.22 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=46.2
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------------CCCeEEEeCCCCCCC
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------------------------TDNLKYIAGDMFQFV 189 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------------------------~~rv~~~~gD~~~~~ 189 (228)
.+|.=||+|.=..+.+.+-...+.+++++|. ++.++.+++ ..++++. .|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHHh
Confidence 4677788775333333222223568999998 555544321 1233322 3332224
Q ss_pred CCceEeeehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 190 PPADAFLFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 190 p~~D~v~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
.++|+|+..-. -+.+....+++++.+.++|+
T Consensus 83 ~~aDlVieavp---e~~~~k~~~~~~l~~~~~~~ 113 (287)
T PRK08293 83 KDADLVIEAVP---EDPEIKGDFYEELAKVAPEK 113 (287)
T ss_pred cCCCEEEEecc---CCHHHHHHHHHHHHhhCCCC
Confidence 46888876532 11234567788888877665
No 394
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=42.86 E-value=25 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=32.5
Q ss_pred EEecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 038208 138 VDVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIA 182 (228)
Q Consensus 138 lDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~ 182 (228)
-=+-||||.=..-.+.++|++++..+--+.....++...+.++++
T Consensus 61 GIliCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~hNnaNVL~ 105 (171)
T PRK08622 61 GVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKEELNANVIG 105 (171)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 334599999888899999999977665577777777644444443
No 395
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=42.74 E-value=36 Score=30.45 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=38.8
Q ss_pred eEEEecCCCcHHHHHHHH-------HCCCCeEEEeec-hHHHhcCC----C-----CCCeEEEeC-CCCCCCCCceEeee
Q 038208 136 SLVDVGGGNGSFSRIISE-------AFPGIKCTVLDL-PHVVANLP----E-----TDNLKYIAG-DMFQFVPPADAFLF 197 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~-------~~p~~~~~~~Dl-p~~i~~a~----~-----~~rv~~~~g-D~~~~~p~~D~v~~ 197 (228)
+|.=||+|+. ++..+.+ ..|..+++.+|+ ++-++... . ...+++..- |..+.+.++|.|+.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 5778999996 7766554 244567999998 54443211 1 334555433 44445778898875
Q ss_pred hh
Q 038208 198 KL 199 (228)
Q Consensus 198 ~~ 199 (228)
..
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 44
No 396
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=42.40 E-value=27 Score=28.38 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=57.8
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCC-C-eEEEeec-hHHHhcCCC----------------------------------
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPG-I-KCTVLDL-PHVVANLPE---------------------------------- 174 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~-~~~~~Dl-p~~i~~a~~---------------------------------- 174 (228)
..+.++.|=.||+|.++.-+.-.+++ + .+++-|+ +++++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999998877776655 3 5888899 788875541
Q ss_pred --------------CCCeEEEeCCCCCCCC--------CceEeeehhh---hcCCC----hhHHHHHHHHHHHHhccCC
Q 038208 175 --------------TDNLKYIAGDMFQFVP--------PADAFLFKLV---FHGLG----DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 175 --------------~~rv~~~~gD~~~~~p--------~~D~v~~~~v---lh~~~----d~~~~~il~~~~~aL~pgG 224 (228)
.......+.|+|.+.+ ..|+|+.--. +.+|. .+-..++|..++.+|.++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 1336788889988422 2677764322 33463 4667899999999995543
No 397
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=42.26 E-value=9.7 Score=33.96 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=41.3
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCC
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--------TDNLKYIAGDM 185 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--------~~rv~~~~gD~ 185 (228)
+..+..|+|+=||.|-++...+++. ++++..|+ |++++-.+. ..+|+.+..|.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 5567899999999999999999884 99999999 888864432 33466666553
No 398
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=41.90 E-value=61 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=24.7
Q ss_pred CCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChh
Q 038208 27 RAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTAS 61 (228)
Q Consensus 27 ~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~ 61 (228)
+|+|.+| +|+.|...|++.... +..|.|.++.-
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~--G~~Ggy~l~~~ 70 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVR--GPGGGYQLGRP 70 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe--CCCCCEeccCC
Confidence 5778777 899999999998653 22567887753
No 399
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=41.76 E-value=41 Score=19.55 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCcee
Q 038208 14 IELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFN 45 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~ 45 (228)
.+..|+..|..+ +.+|..| .++-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 456788889886 4688777 788888888874
No 400
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=41.52 E-value=20 Score=29.84 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.1
Q ss_pred ccCCCeEEEecC-------------------------CCcHHHHHHHHHC
Q 038208 131 FEGLGSLVDVGG-------------------------GNGSFSRIISEAF 155 (228)
Q Consensus 131 ~~~~~~vlDvGg-------------------------G~G~~~~~l~~~~ 155 (228)
.+..++|+|||| |+|.|+..++++.
T Consensus 95 ~p~~~tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L 144 (262)
T TIGR02261 95 NPEARAVLDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARYL 144 (262)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHHh
Confidence 466788999998 9999999999873
No 401
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=41.33 E-value=64 Score=25.82 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=51.2
Q ss_pred cCCCeEEEecCCCcHHHHHHH---H-HCCCCeEEEeech--HHHhcCCCCCCeEEEeCCCCCC-C--C------Cc-eEe
Q 038208 132 EGLGSLVDVGGGNGSFSRIIS---E-AFPGIKCTVLDLP--HVVANLPETDNLKYIAGDMFQF-V--P------PA-DAF 195 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~---~-~~p~~~~~~~Dlp--~~i~~a~~~~rv~~~~gD~~~~-~--p------~~-D~v 195 (228)
.++..|+++|.-.|.-+..++ - -....+++++|+. ..-..|++.++|.|+.|+-..| + + ++ -+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 357899999965554443333 2 3345788888873 2223444478999999987663 1 1 12 233
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pg 223 (228)
++-..-| +-+.+...|+-....|..|
T Consensus 148 vilDsdH--s~~hvLAel~~~~pllsaG 173 (237)
T COG3510 148 VILDSDH--SMEHVLAELKLLAPLLSAG 173 (237)
T ss_pred EEecCCc--hHHHHHHHHHHhhhHhhcC
Confidence 3333333 3355566666665555443
No 402
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=41.07 E-value=85 Score=19.25 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCCh
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTA 60 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~ 60 (228)
.|+.|...|+++... .+.|.+++
T Consensus 45 ~l~~L~~~g~i~~~~----~~~~~l~~ 67 (67)
T cd00092 45 TLKELEEEGLISRRG----RGKYRVNP 67 (67)
T ss_pred HHHHHHHCCCEEecC----CCeEEeCC
Confidence 899999999999884 37787664
No 403
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=40.93 E-value=69 Score=26.69 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHC----CCCeEEEeechHHH---hcCCCCCCeEEEeCCCCCC------CCCceEeeeh-hhhcCCC
Q 038208 142 GGNGSFSRIISEAF----PGIKCTVLDLPHVV---ANLPETDNLKYIAGDMFQF------VPPADAFLFK-LVFHGLG 205 (228)
Q Consensus 142 gG~G~~~~~l~~~~----p~~~~~~~Dlp~~i---~~a~~~~rv~~~~gD~~~~------~p~~D~v~~~-~vlh~~~ 205 (228)
||+|.++..+.++. +..++.++|+..-- ......+..+++.+|+.++ +.++|+|+-. ...+.+.
T Consensus 4 GgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 4 GGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG 81 (280)
T ss_pred cCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence 78888888776643 23568888873222 1222244455999999873 3357877533 4445554
No 404
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=39.82 E-value=13 Score=33.20 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=36.4
Q ss_pred eEEEecCCCcHHHHH----HHH--HCCCCeEEEeec-hHHHhcCCC---------CCCeEEE-eCCCCCCCCCceEeeeh
Q 038208 136 SLVDVGGGNGSFSRI----ISE--AFPGIKCTVLDL-PHVVANLPE---------TDNLKYI-AGDMFQFVPPADAFLFK 198 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~----l~~--~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~-~gD~~~~~p~~D~v~~~ 198 (228)
+|.=||+|+-.++.+ ++. ..+..+++++|+ ++.++.... ....++. ..|..+.+.++|+|+..
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 567789999434322 332 344568999998 554443221 1223332 44554456678888765
Q ss_pred hh
Q 038208 199 LV 200 (228)
Q Consensus 199 ~v 200 (228)
-.
T Consensus 82 i~ 83 (423)
T cd05297 82 IQ 83 (423)
T ss_pred eE
Confidence 54
No 405
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=39.72 E-value=47 Score=24.01 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCe---EeCCh
Q 038208 6 SSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEA---YGLTA 60 (228)
Q Consensus 6 ~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~---~~~t~ 60 (228)
.+.+|.--.++.|+..|... ++.++.| =|+.|...|+++.+. .|+ |++++
T Consensus 9 ~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r----~Gr~~~Y~l~~ 75 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESGLLLDRK----QGKWVHYRLSP 75 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE----EcCEEEEEECc
Confidence 45566666899999999764 4777666 578999999998776 344 66655
No 406
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=39.71 E-value=54 Score=24.33 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
.+|-....+-+=-.+.|...|+.. +|.|+.| -|+.|...|++..+.
T Consensus 53 ~Sye~la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgRdv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 53 TSYEDLARVLSPRNLELLELIAQE-EPASINELAELVGRDVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred ccHHHHHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCcchHHHHHHHHHHHhcCeEEEec
Confidence 344444555555677888999887 6999888 789999999998875
No 407
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=39.52 E-value=29 Score=18.11 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=17.5
Q ss_pred hhhHhhhCC-CCcCHHHHHHHHH-hCC
Q 038208 18 IADIIHCHG-RAITLSELMRLLV-HSG 42 (228)
Q Consensus 18 lfd~L~~~~-~p~t~~ell~~L~-~~g 42 (228)
+|+.+..++ |-++.+|+..+|. ++|
T Consensus 5 ~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 5 AFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 566666654 7889999877777 665
No 408
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=39.49 E-value=33 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=20.2
Q ss_pred ccCCCeEEEecCCCcH-HHHHHHHHC-CCCeEEEe
Q 038208 131 FEGLGSLVDVGGGNGS-FSRIISEAF-PGIKCTVL 163 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~-~~~~l~~~~-p~~~~~~~ 163 (228)
.+++++||-|||.+|. ++..|+..| -+...+++
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV 70 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV 70 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence 4567899999999998 555677765 34444444
No 409
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=38.87 E-value=25 Score=26.40 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCC--CeEEEeCCC
Q 038208 142 GGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETD--NLKYIAGDM 185 (228)
Q Consensus 142 gG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~--rv~~~~gD~ 185 (228)
||||.=..-.+.++|++++..+--+.....++... +|-.+.+.+
T Consensus 63 CGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ 108 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMIAAEVSDERSAYMTRGHNNARMITVGAEI 108 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHHcCCcEEEECccc
Confidence 88988888889999999987776566666666644 444444343
No 410
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=38.71 E-value=54 Score=18.58 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHhCCceeecccCCCCCeEeC
Q 038208 29 ITLSELMRLLVHSGCFNKTKVNGQEEAYGL 58 (228)
Q Consensus 29 ~t~~ell~~L~~~g~l~~~~~~~~~~~~~~ 58 (228)
.++...|+.|...|+++.. .+.|..
T Consensus 23 ~tv~~~l~~L~~~g~l~~~-----~~~~~i 47 (48)
T smart00419 23 ETVSRTLKRLEKEGLISRE-----GGRIVI 47 (48)
T ss_pred HHHHHHHHHHHHCCCEEEe-----CCEEEE
Confidence 3444499999999999987 366754
No 411
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=37.59 E-value=42 Score=19.55 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=23.0
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceee
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNK 46 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~ 46 (228)
++.|...|.. +|.++.| =|+.|...|+++.
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCcCeeC
Confidence 5667788877 6888887 5778888888863
No 412
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=37.53 E-value=40 Score=20.53 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=24.4
Q ss_pred HcChhhHhhhCCCC-cCHHH--------------HHHHHHhCCceeecc
Q 038208 15 ELSIADIIHCHGRA-ITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 15 ~lglfd~L~~~~~p-~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
++.++-.|...+++ +|..| +++.|...|++++..
T Consensus 7 q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 44556666665322 67666 899999999999875
No 413
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.30 E-value=94 Score=25.57 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=49.7
Q ss_pred EEEecCCCcHHHHHHHHHCC--CCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-CC-----Cc-eEeeehhhhcCCCh
Q 038208 137 LVDVGGGNGSFSRIISEAFP--GIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF-VP-----PA-DAFLFKLVFHGLGD 206 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~-~p-----~~-D~v~~~~vlh~~~d 206 (228)
||=.|+ +|..+..++++.- +.+++++|. +.-..... .++.++.+|.... .. .. |+|+.....+.-+.
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~ 79 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPD 79 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccc--cccceeeecccchHHHHHHHhcCCCEEEEccccCchhh
Confidence 455555 9999999988775 568899997 22222111 5678888887662 11 23 77765555543221
Q ss_pred ----------hHHHHHHHHHHHHhccC
Q 038208 207 ----------EDGLKILKKRREAIASN 223 (228)
Q Consensus 207 ----------~~~~~il~~~~~aL~pg 223 (228)
+.+....+++.++.+..
T Consensus 80 ~~~~~~~~~~~~nv~gt~~ll~aa~~~ 106 (314)
T COG0451 80 SNASDPAEFLDVNVDGTLNLLEAARAA 106 (314)
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 23344456666666553
No 414
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=37.17 E-value=69 Score=24.67 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHHcCh-------hhHhhhCCCCcCHHH---------------HHHHHHhCCceeecccCCCCCeEeCC
Q 038208 2 FNHLSSMSLKCAIELSI-------ADIIHCHGRAITLSE---------------LMRLLVHSGCFNKTKVNGQEEAYGLT 59 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lgl-------fd~L~~~~~p~t~~e---------------ll~~L~~~g~l~~~~~~~~~~~~~~t 59 (228)
+|.|.-.|+.+|.+.++ +..|...+.|.++++ -||-|...|+++.... +..-+|..|
T Consensus 65 f~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~eDth~itYslrKL~k~gLit~t~~-gkevTy~vT 143 (199)
T COG5631 65 FGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNREDTHNITYSLRKLLKGGLITRTGS-GKEVTYEVT 143 (199)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHhccceecCCC-CceEEEEEe
Confidence 57788889988866553 444544457888888 5788999999998762 223468888
Q ss_pred hhch
Q 038208 60 ASST 63 (228)
Q Consensus 60 ~~~~ 63 (228)
+.+.
T Consensus 144 a~G~ 147 (199)
T COG5631 144 ALGH 147 (199)
T ss_pred cchH
Confidence 8775
No 415
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=36.80 E-value=50 Score=22.26 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCcCHHHHHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 27 RAITLSELMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 27 ~p~t~~ell~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
.+.|+...++-|...|++.+.+ +..|.+|+.+..+.
T Consensus 12 s~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~ 47 (96)
T smart00529 12 SPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLA 47 (96)
T ss_pred ChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHH
Confidence 3556667999999999999986 56899999877544
No 416
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=36.55 E-value=42 Score=25.72 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=25.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
+|+=||+|.+.+..+..-+.++.+++++|-
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 478899999998887777778899888863
No 417
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=36.50 E-value=90 Score=23.45 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHCCCCeEEEeec---hHHHhcCCC-CCCeEEEeCCCCCCCCC
Q 038208 149 RIISEAFPGIKCTVLDL---PHVVANLPE-TDNLKYIAGDMFQFVPP 191 (228)
Q Consensus 149 ~~l~~~~p~~~~~~~Dl---p~~i~~a~~-~~rv~~~~gD~~~~~p~ 191 (228)
..+.+.+|+-++++.|| +.-++..+. ..++++..-|+.. .|.
T Consensus 81 ~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~-YP~ 126 (142)
T PF07801_consen 81 SSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSK-YPK 126 (142)
T ss_pred HHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCCcc-CcH
Confidence 35666889999999998 566666766 4889999988854 443
No 418
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=36.36 E-value=53 Score=28.54 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred cCCCeEEEecCCCcHHHH--HHHHHCCCCeEEEeec
Q 038208 132 EGLGSLVDVGGGNGSFSR--IISEAFPGIKCTVLDL 165 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~Dl 165 (228)
++.-.||-||||+|..+. .+.++.|.-++.++|-
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep 72 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEP 72 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecc
Confidence 456789999999998655 6778888888777773
No 419
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=36.34 E-value=29 Score=26.04 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 038208 142 GGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYI 181 (228)
Q Consensus 142 gG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~ 181 (228)
||+|.=..-.+.++|++++..+--+.....+++..+.+++
T Consensus 62 CGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~hNnaNVl 101 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEVSDERSAYMTRGHNNARMI 101 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHHcCCcEE
Confidence 8898888888899999997666556666666654443333
No 420
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=36.20 E-value=48 Score=25.41 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHcChhhHhhhCCCCcCHHHHHHHHHhC
Q 038208 2 FNHLSSMSLKCAIELSIADIIHCHGRAITLSELMRLLVHS 41 (228)
Q Consensus 2 ~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~ell~~L~~~ 41 (228)
+||-....--.|+++|.-++|++ |....+++++|...
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaK---PAdaDdi~aAl~~~ 124 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAK---PADADDILAALLRR 124 (182)
T ss_pred ecchHHHHHHHHHHhhhhhhcCC---CCChHHHHHHHhhc
Confidence 57777777778999999999986 99999999888754
No 421
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.97 E-value=62 Score=24.86 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHcChhhHhhhCCCCcCHHH-------------------HHHHHHhCCceeecc
Q 038208 14 IELSIADIIHCHGRAITLSE-------------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e-------------------ll~~L~~~g~l~~~~ 48 (228)
-+.-|++.|....+++|++| .|+.|+..|++.+..
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 34556777776556777777 778888888887764
No 422
>PF05059 Orbi_VP4: Orbivirus VP4 core protein; InterPro: IPR007753 Orbivirus are double stranded RNA retroviruses of which the Bluetongue virus (BTV) is a member. The core of BTV is a multienzyme complex composed of two major proteins (VP7 and VP3) and three minor proteins (VP1, VP4 and VP6) in addition to the viral genome. VP4 has been shown to perform all RNA capping activities and has both methyltransferase type 1 and type 2 activities associated with it [].; GO: 0019028 viral capsid; PDB: 2JHP_A 2JHA_A 2JH9_A 2JH8_A 2JHC_A.
Probab=35.79 E-value=64 Score=29.97 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCC----CeEEEee
Q 038208 120 SFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPG----IKCTVLD 164 (228)
Q Consensus 120 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~D 164 (228)
..++. .+|...-+...|.=||||.|..+..++++-|. ++-+++|
T Consensus 178 EKLVS-MLDY~vysad~V~YVGsGDlRTL~~F~krdp~RF~rv~W~~~D 225 (644)
T PF05059_consen 178 EKLVS-MLDYAVYSADEVHYVGSGDLRTLMQFAKRDPKRFNRVQWHCID 225 (644)
T ss_dssp -HHHH-HHHHH-SS-SEEEEES-TTSHHHHHHHHHSHHHHHTSEEEEE-
T ss_pred hhHHH-HHHhhhccccEEEEeccCCcHHHHHHHhhChhhhhceEEEEEC
Confidence 44666 66644556779999999999999999998764 5778887
No 423
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=35.42 E-value=25 Score=31.81 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeechHHH-------hcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDLPHVV-------ANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLG 205 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i-------~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~ 205 (228)
...+|+=||||+=..+.++--+--.+.+++-=.+.+| +.|.+ +.+ ...+..+-.+.+|+|++. .|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lP 106 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TP 106 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CC
Confidence 4689999999875554333222223333311112222 22211 222 122322235679998864 45
Q ss_pred hhHHHHHHHHHHHHhccCC
Q 038208 206 DEDGLKILKKRREAIASNG 224 (228)
Q Consensus 206 d~~~~~il~~~~~aL~pgG 224 (228)
|+....+.+++...||||-
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga 125 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGA 125 (487)
T ss_pred hHHHHHHHHHHHhhCCCCC
Confidence 5656777899999999984
No 424
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=35.36 E-value=39 Score=21.58 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=22.4
Q ss_pred hhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 18 IADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 18 lfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
|-+.|... +.+|+.| +|+.|+.+|.+++..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 45566665 4667666 899999999999875
No 425
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=35.24 E-value=19 Score=32.62 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=75.3
Q ss_pred CccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----
Q 038208 100 NPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE---- 174 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~---- 174 (228)
.++..-.|+..|.+.-.+....... . ......++=||-|.|.+...+....|..+++++.+ |++++.++.
T Consensus 267 ~~~l~s~~h~~m~~g~aL~~n~~~~-~----~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 267 KPELASQYHQMMIGGLALIMNRPPQ-K----LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred CcccCcchhhhhhccceeccccCch-h----ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 3455555666665544332221111 1 23456777788888999999999999999999998 999998874
Q ss_pred --CCCeEEEeCCCCC----C---CC---CceEeee----hhhhcCC---C-hhHHHHHHHHHHHHhccCCC
Q 038208 175 --TDNLKYIAGDMFQ----F---VP---PADAFLF----KLVFHGL---G-DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 175 --~~rv~~~~gD~~~----~---~p---~~D~v~~----~~vlh~~---~-d~~~~~il~~~~~aL~pgG~ 225 (228)
..|...+-.|-.. . .+ .+|+++. .. .|-. + +--+..+|..+..+|+|.|.
T Consensus 342 ~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~ 411 (482)
T KOG2352|consen 342 MQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGM 411 (482)
T ss_pred hhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccce
Confidence 3344444444322 1 11 3787754 22 3332 2 33556789999999999874
No 426
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.11 E-value=74 Score=23.68 Aligned_cols=35 Identities=9% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHcChhhHhhhC-CCCcCHHH-------------------HHHHHHhCCceeecc
Q 038208 14 IELSIADIIHCH-GRAITLSE-------------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 14 ~~lglfd~L~~~-~~p~t~~e-------------------ll~~L~~~g~l~~~~ 48 (228)
-+.-|++.|... +++.|++| .|+.|+..|++.+..
T Consensus 18 qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 455677777653 25777777 788899999998764
No 427
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=35.01 E-value=36 Score=27.85 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-----h--HHHhcCCCCCCeEEEeCCCCC
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-----P--HVVANLPETDNLKYIAGDMFQ 187 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----p--~~i~~a~~~~rv~~~~gD~~~ 187 (228)
...-|.+||.|.|...+.++++.- .+..+++. | +++..|. ..+...+.+|.+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa-~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA-PGKLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC-CcceEEeccccce
Confidence 346799999999999999998632 13444433 2 2333333 3466677777643
No 428
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=34.74 E-value=81 Score=30.03 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=30.8
Q ss_pred hHHHHHHHhhhhhccCCCeEEEecCCCcHHHHHHHHHCCCCeEEE
Q 038208 118 MTSFVVKAECKQIFEGLGSLVDVGGGNGSFSRIISEAFPGIKCTV 162 (228)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~ 162 (228)
..+.++. .+. -...-.|-+|=|+|..+..+++.||..+++-
T Consensus 311 KlRsIL~-~~~---i~~~d~l~~GDGSGGita~lLR~~p~sr~iF 351 (675)
T PF14314_consen 311 KLRSILK-NLN---IKYRDALCGGDGSGGITACLLRMNPTSRGIF 351 (675)
T ss_pred hHHHHHH-hcC---CCcceeEEEecCchHHHHHHHHhCcccceee
Confidence 3455666 443 2346678889999999999999999998753
No 429
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=34.57 E-value=30 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.759 Sum_probs=21.6
Q ss_pred ccCCCeEEEecC-------------------------CCcHHHHHHHHHC
Q 038208 131 FEGLGSLVDVGG-------------------------GNGSFSRIISEAF 155 (228)
Q Consensus 131 ~~~~~~vlDvGg-------------------------G~G~~~~~l~~~~ 155 (228)
.++..+|+|||| |||.|+..++++.
T Consensus 265 ~P~vrTIIDIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L 314 (432)
T TIGR02259 265 YPGTRTVLDIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM 314 (432)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHc
Confidence 467789999999 9999999999873
No 430
>PRK07680 late competence protein ComER; Validated
Probab=34.54 E-value=82 Score=26.00 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=42.6
Q ss_pred EEEecCCC--cHHHHHHHHHCC-C-CeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 137 LVDVGGGN--GSFSRIISEAFP-G-IKCTVLDL-PHVVANLPE-TDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 137 vlDvGgG~--G~~~~~l~~~~p-~-~~~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
|.=||+|. +.++..+.+... + -.++++|. ++-.+.... ...++.. .|..+-...+|+|++.- ++....
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVilav-----~p~~~~ 76 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFICV-----KPLDIY 76 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEec-----CHHHHH
Confidence 55577655 334444444321 1 25788887 444433322 1134322 22222234578886654 566677
Q ss_pred HHHHHHHHHhccC
Q 038208 211 KILKKRREAIASN 223 (228)
Q Consensus 211 ~il~~~~~aL~pg 223 (228)
.+++++...++++
T Consensus 77 ~vl~~l~~~l~~~ 89 (273)
T PRK07680 77 PLLQKLAPHLTDE 89 (273)
T ss_pred HHHHHHHhhcCCC
Confidence 7888887777665
No 431
>PRK10637 cysG siroheme synthase; Provisional
Probab=34.52 E-value=67 Score=28.96 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=41.7
Q ss_pred CCCeEEEecCCCcHHH--HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCceEeeeh
Q 038208 133 GLGSLVDVGGGNGSFS--RIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ-FVPPADAFLFK 198 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~--~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~ 198 (228)
..++||=||||.=..- ..+++...+++++.-++ +++.+. ....+++++..++.. .+.++++|+..
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l-~~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAW-ADAGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHH-HhCCCEEEEeCCCChHHhCCCEEEEEC
Confidence 5689999999986654 34555444444444455 444332 235789999988866 46678877654
No 432
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=34.39 E-value=77 Score=26.10 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.5
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
..|+=||+|...++.++.-..++++++++|.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 4688899999998888777778999999996
No 433
>PRK15076 alpha-galactosidase; Provisional
Probab=34.37 E-value=45 Score=29.89 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred eEEEecCCC-cHHHH---HHH--HHCCCCeEEEeec-hHHHhcCCC---------CCCeEEE-eCCCCCCCCCceEeeeh
Q 038208 136 SLVDVGGGN-GSFSR---IIS--EAFPGIKCTVLDL-PHVVANLPE---------TDNLKYI-AGDMFQFVPPADAFLFK 198 (228)
Q Consensus 136 ~vlDvGgG~-G~~~~---~l~--~~~p~~~~~~~Dl-p~~i~~a~~---------~~rv~~~-~gD~~~~~p~~D~v~~~ 198 (228)
+|.=||+|+ |.... .++ ...+..+++++|+ ++.++.+.. ...+++. ..|..+.+.++|+|+..
T Consensus 3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~t 82 (431)
T PRK15076 3 KITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVINA 82 (431)
T ss_pred EEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeEe
Confidence 677899999 53322 332 4456668999998 554442211 2234444 55654556778888654
Q ss_pred h
Q 038208 199 L 199 (228)
Q Consensus 199 ~ 199 (228)
-
T Consensus 83 i 83 (431)
T PRK15076 83 I 83 (431)
T ss_pred e
Confidence 3
No 434
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=34.16 E-value=96 Score=27.48 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=43.1
Q ss_pred CeEEEecCC-CcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCC------CCCceEeeeh
Q 038208 135 GSLVDVGGG-NGSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAGDMFQF------VPPADAFLFK 198 (228)
Q Consensus 135 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~gD~~~~------~p~~D~v~~~ 198 (228)
.+||=|||| -|......+.++-+.++++-|. ++-++++.. ..+++...-|.... +.++|+++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 367888873 3444444444555578999999 677776654 45899999999762 2357776543
No 435
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.93 E-value=1.8e+02 Score=25.93 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=43.0
Q ss_pred CCCeEEEec-CCCcHHHHHHHHHCCC-CeEEEeech---HHHhcCCCCCCeEEEeCCCCC-CCCCceEeeehhhhc
Q 038208 133 GLGSLVDVG-GGNGSFSRIISEAFPG-IKCTVLDLP---HVVANLPETDNLKYIAGDMFQ-FVPPADAFLFKLVFH 202 (228)
Q Consensus 133 ~~~~vlDvG-gG~G~~~~~l~~~~p~-~~~~~~Dlp---~~i~~a~~~~rv~~~~gD~~~-~~p~~D~v~~~~vlh 202 (228)
+..+|+=|| ||+|.-+.+++.+.-. .++++.|.. ...+..+ ..+++..+.... .+.++|+|+.+--+.
T Consensus 6 ~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~--~g~~~~~g~~~~~~~~~~d~vV~SpgI~ 79 (438)
T PRK04663 6 GIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP--EDVELHSGGWNLEWLLEADLVVTNPGIA 79 (438)
T ss_pred CCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh--cCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 335677777 6788888777776644 789999972 2222221 266776554322 355689888877664
No 436
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=33.89 E-value=53 Score=29.25 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=24.5
Q ss_pred CeEEEecCCCcHHH--HHHHHHCCCCeEEEeec
Q 038208 135 GSLVDVGGGNGSFS--RIISEAFPGIKCTVLDL 165 (228)
Q Consensus 135 ~~vlDvGgG~G~~~--~~l~~~~p~~~~~~~Dl 165 (228)
.+||=||||.|.+. ..+++..|+.+++++|-
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC
Confidence 37999999998754 45666678899999985
No 437
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=33.85 E-value=22 Score=23.97 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHC-----CCCeEEEe-ec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHHHHHH
Q 038208 143 GNGSFSRIISEAF-----PGIKCTVL-DL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLKILKK 215 (228)
Q Consensus 143 G~G~~~~~l~~~~-----p~~~~~~~-Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~il~~ 215 (228)
|.|..+..|++.. +..++++. +. |+-.+...+.-.+.+...|..+-...+|+|++. .++.....+++.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila-----v~p~~~~~v~~~ 80 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA-----VKPQQLPEVLSE 80 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE-----ECHHHHHHHHHH
Confidence 5555555555532 22466634 76 665554433233444433332223357998876 455556677777
Q ss_pred HHHHhccC
Q 038208 216 RREAIASN 223 (228)
Q Consensus 216 ~~~aL~pg 223 (228)
+ ..+.++
T Consensus 81 i-~~~~~~ 87 (96)
T PF03807_consen 81 I-PHLLKG 87 (96)
T ss_dssp H-HHHHTT
T ss_pred H-hhccCC
Confidence 7 444443
No 438
>PRK06223 malate dehydrogenase; Reviewed
Probab=33.72 E-value=1.5e+02 Score=24.97 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=34.7
Q ss_pred CeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhc-C----C--C--CCCeEEE-eCCCCCCCCCceEeeehh
Q 038208 135 GSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVAN-L----P--E--TDNLKYI-AGDMFQFVPPADAFLFKL 199 (228)
Q Consensus 135 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~-a----~--~--~~rv~~~-~gD~~~~~p~~D~v~~~~ 199 (228)
.+|.=||+|. |......+....-.+++++|+ ++.... + . . ....++. ..|+ +.+.++|+|++.-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 3678899987 665554444332128999997 322211 0 0 0 1123333 2454 4466799998653
No 439
>PRK06847 hypothetical protein; Provisional
Probab=33.71 E-value=57 Score=28.00 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
+...|+=||+|.+.++.++.-+.-+++++++|.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 356799999999988777766656788999986
No 440
>PRK11050 manganese transport regulator MntR; Provisional
Probab=33.17 E-value=86 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhchhhh
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLI 66 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~ 66 (228)
.++.|...|++.+.. ...+.+|+.+..+.
T Consensus 71 ~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~ 99 (152)
T PRK11050 71 MLKRLARDGLVEMRP----YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHHCCCEEEec----CCceEECchHHHHH
Confidence 889999999999875 46788998887554
No 441
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=32.94 E-value=78 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=26.5
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCCCC----eEEEeec
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFPGI----KCTVLDL 165 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~----~~~~~Dl 165 (228)
+.+..+|||.....|.=+..+++..-.. .++.-|.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 5678999999999999888888764322 4566676
No 442
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.81 E-value=66 Score=28.25 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC-CceEeeehhhhc
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE------TDNLKYIAGDMFQ---FVP-PADAFLFKLVFH 202 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~------~~rv~~~~gD~~~---~~p-~~D~v~~~~vlh 202 (228)
..+|+|-=+|+|.-++.++...+..+++.-|+ |..++.+++ ......+..|... ... .||+|=+=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC----
Confidence 78999999999999999999999999999999 888877664 2233333355432 111 24444110
Q ss_pred CCChhHHHHHHHHHHHHhccCCCC
Q 038208 203 GLGDEDGLKILKKRREAIASNGER 226 (228)
Q Consensus 203 ~~~d~~~~~il~~~~~aL~pgG~~ 226 (228)
-+..+ .-++..+.++++.||..
T Consensus 129 PFGSP--aPFlDaA~~s~~~~G~l 150 (380)
T COG1867 129 PFGSP--APFLDAALRSVRRGGLL 150 (380)
T ss_pred CCCCC--chHHHHHHHHhhcCCEE
Confidence 01111 34566666677666643
No 443
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=32.79 E-value=32 Score=25.83 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 038208 142 GGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYI 181 (228)
Q Consensus 142 gG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~ 181 (228)
||||.=..-.+.++|+++...+--+.....++...+.+++
T Consensus 63 CGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL 102 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNARMI 102 (142)
T ss_pred cCCChhhhhhhhcCCCeEEEEECCHHHHHHHHHHcCCcEE
Confidence 8888888888999999997666556666666654443333
No 444
>PRK06153 hypothetical protein; Provisional
Probab=32.73 E-value=64 Score=28.58 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCeEEEecC-CCcHHHHHHHHHCCCCeEEEeec
Q 038208 134 LGSLVDVGG-GNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 134 ~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
..+|+=||| |+|.+....+.+.+-.+++++|-
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 468999995 78998888888888778999985
No 445
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=32.53 E-value=1e+02 Score=26.26 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=38.6
Q ss_pred eEEEecCCCcHHHHHHHHHC---CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC---C----CCceEee
Q 038208 136 SLVDVGGGNGSFSRIISEAF---PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF---V----PPADAFL 196 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~---~----p~~D~v~ 196 (228)
+|| |=||+|..+..+++.. .+.+++++|. +..........+++++.+|+..+ + .++|+|+
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 344 5578899888888765 3467888887 33222222245799999999732 1 2467765
No 446
>PRK06475 salicylate hydroxylase; Provisional
Probab=32.28 E-value=53 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=27.0
Q ss_pred CeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 135 GSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
.+|+=||||.+.++.+++-+..+.+++++|.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5789999999998888877777899999996
No 447
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=32.01 E-value=96 Score=26.41 Aligned_cols=39 Identities=31% Similarity=0.550 Sum_probs=29.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC--CCeEEEeechHHH
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP--GIKCTVLDLPHVV 169 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dlp~~i 169 (228)
+....+|+=+|||.-.+...+.+.+| +-++++.|-|+..
T Consensus 270 ~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfA 310 (318)
T PF06406_consen 270 FSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFA 310 (318)
T ss_dssp S-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGH
T ss_pred hccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhh
Confidence 44567899999999999999999976 5678888877643
No 448
>PTZ00117 malate dehydrogenase; Provisional
Probab=31.94 E-value=97 Score=26.47 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeech-HHHh-------cCCC--CCCeEEEe-CCCCCCCCCceEeeehh
Q 038208 133 GLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDLP-HVVA-------NLPE--TDNLKYIA-GDMFQFVPPADAFLFKL 199 (228)
Q Consensus 133 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dlp-~~i~-------~a~~--~~rv~~~~-gD~~~~~p~~D~v~~~~ 199 (228)
+..+|.=||+|+ |.....++....-.+++++|+. +..+ .+.. ..+.++.. .|+. .+.++|+|++.-
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 345889999988 7766655555432578999983 2211 1111 22234433 4543 567799998765
No 449
>PRK07574 formate dehydrogenase; Provisional
Probab=31.64 E-value=1.1e+02 Score=27.16 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=44.5
Q ss_pred CCeEEEecCCC-cHHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHH
Q 038208 134 LGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDLPH-VVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLK 211 (228)
Q Consensus 134 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dlp~-~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~ 211 (228)
..+|.=||.|. |......++.+ +.+++++|... ..+..+ ...++.. .++.+-++.+|+|++.-.+. ++...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr~~~~~~~~~-~~g~~~~-~~l~ell~~aDvV~l~lPlt----~~T~~ 264 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDRHRLPEEVEQ-ELGLTYH-VSFDSLVSVCDVVTIHCPLH----PETEH 264 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCCCCchhhHh-hcCceec-CCHHHHhhcCCEEEEcCCCC----HHHHH
Confidence 45777788764 54444444443 67899999622 111111 1123221 12222245689998776553 33344
Q ss_pred HH-HHHHHHhccC
Q 038208 212 IL-KKRREAIASN 223 (228)
Q Consensus 212 il-~~~~~aL~pg 223 (228)
++ ++....||||
T Consensus 265 li~~~~l~~mk~g 277 (385)
T PRK07574 265 LFDADVLSRMKRG 277 (385)
T ss_pred HhCHHHHhcCCCC
Confidence 44 4577778876
No 450
>PLN02427 UDP-apiose/xylose synthase
Probab=31.38 E-value=1.1e+02 Score=26.54 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=38.8
Q ss_pred CeEEEecCCCcHHHHHHHHHCC---CCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCC------CCCceEee
Q 038208 135 GSLVDVGGGNGSFSRIISEAFP---GIKCTVLDL-PHVVANLP------ETDNLKYIAGDMFQF------VPPADAFL 196 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~Dl-p~~i~~a~------~~~rv~~~~gD~~~~------~p~~D~v~ 196 (228)
.+|| |=||+|..+..++++.- ..+++++|. +.-+.... ...+++++.+|+.+. +.++|+|+
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 4666 66788888888877652 357888886 33222211 124799999999762 22467664
No 451
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.26 E-value=36 Score=29.78 Aligned_cols=37 Identities=24% Similarity=0.493 Sum_probs=25.5
Q ss_pred CCeEEEecCC-CcHHHHHHHHHCCCCeEEEeec-hHHHhc
Q 038208 134 LGSLVDVGGG-NGSFSRIISEAFPGIKCTVLDL-PHVVAN 171 (228)
Q Consensus 134 ~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~ 171 (228)
..+|+=||+| .|..+...+++. +.+++++|. ++..+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQ 205 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHH
Confidence 4678888876 556666767665 458999997 554443
No 452
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=30.88 E-value=41 Score=20.37 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=24.1
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
++.++..|... ++++..+ +++-|...|++++..
T Consensus 5 q~~iL~~l~~~-~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYEN-GGITQSELAEKLGISRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 44455556665 4677666 899999999999875
No 453
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=30.87 E-value=88 Score=24.67 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=33.6
Q ss_pred cChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeeccc---CC-CCCeEeCChhchhhhh
Q 038208 16 LSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKV---NG-QEEAYGLTASSTLLIK 67 (228)
Q Consensus 16 lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~---~~-~~~~~~~t~~~~~l~~ 67 (228)
..|+..|... +++|..| .|+.|...|++++... .+ ..-.|.+|+.+..+..
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 3466666655 4677766 8899999999987621 11 2223788887765443
No 454
>PRK08163 salicylate hydroxylase; Provisional
Probab=30.67 E-value=69 Score=27.72 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=27.8
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
...|+=||+|.+.++.+++-+..+++++++|.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 45799999999999888887777899999996
No 455
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=30.47 E-value=2.6e+02 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=27.5
Q ss_pred cCCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhc
Q 038208 132 EGLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVAN 171 (228)
Q Consensus 132 ~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~ 171 (228)
....+|+.+|+|+ |..+..+++... .++++.+. ++..+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~ 173 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLEL 173 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHH
Confidence 4567899999885 667777777653 77888877 444333
No 456
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=30.27 E-value=60 Score=29.07 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=25.3
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
+|+=||+|+|.++.++.-...+.+++++|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~ 31 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE 31 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 688899999988887777667889999985
No 457
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=29.71 E-value=1.4e+02 Score=24.56 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCCeEEEecC-CCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-CceEeeehhhhcCC
Q 038208 133 GLGSLVDVGG-GNGSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVP-PADAFLFKLVFHGL 204 (228)
Q Consensus 133 ~~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p-~~D~v~~~~vlh~~ 204 (228)
...++|=+|. =+|.+....+...- +++++|+ |++.+.. .++|.|... ..+.+ .+|+|+=-.-|--.
T Consensus 41 ~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll--~~~i~F~~~--~~~~~~~~DlIID~TGlGGv 109 (252)
T PF06690_consen 41 EFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL--NENIKFMEF--RNGLEGNPDLIIDTTGLGGV 109 (252)
T ss_pred ccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh--cCCCceeec--cCCCCCCCCEEEECCCCCCC
Confidence 3458888885 35666665555533 8999999 7777665 567777732 11222 35666544333333
No 458
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=29.66 E-value=1e+02 Score=22.08 Aligned_cols=50 Identities=18% Similarity=0.442 Sum_probs=31.1
Q ss_pred HHHHHHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 7 SMSLKCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 7 ~~~L~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
..+|++...+.. ..+++|+|.++ +++.|...|++.... +..+.|.++.-.
T Consensus 8 ~~al~~l~~la~----~~~~~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~--g~~ggy~l~~~~ 71 (132)
T TIGR00738 8 EYALRALLDLAL----NPDEGPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVR--GPGGGYRLARPP 71 (132)
T ss_pred HHHHHHHHHHHh----CCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecc--CCCCCccCCCCH
Confidence 344555544432 22224788877 899999999998753 114578876543
No 459
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=29.06 E-value=28 Score=29.41 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCCeEEEeCCCCCCCC------C-ceEeeehh-hhcCCChhHHHHHHHHHHHHhccCC
Q 038208 175 TDNLKYIAGDMFQFVP------P-ADAFLFKL-VFHGLGDEDGLKILKKRREAIASNG 224 (228)
Q Consensus 175 ~~rv~~~~gD~~~~~p------~-~D~v~~~~-vlh~~~d~~~~~il~~~~~aL~pgG 224 (228)
.-+|+|++.|....++ + ||++++++ ..|.+.++ +.++|+|++
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A 248 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDA 248 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCC
Confidence 3468888887766443 2 88886554 56666655 555677775
No 460
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=28.90 E-value=69 Score=26.99 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCC----CeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CCCceEeeehhh
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPG----IKCTVLDLPHVVANLPETDNLKYIAGDMFQF---------VPPADAFLFKLV 200 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dlp~~i~~a~~~~rv~~~~gD~~~~---------~p~~D~v~~~~v 200 (228)
...||=+|.+.|.+..-|.+.+++ ++.+.+|-.......+...+|+++.. ++++ ....|+++++.+
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~Le~l~nV~Li~~-f~de~~i~~~r~~~~~~~illISDI 139 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPILNGLRDVTLVTR-FVDEAYLRRLKKQLHPSKIILISDI 139 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHhhcCCCcEEeeHh-hcCHHHHHHHHHhccCCCEEEEEee
Confidence 359999999999999999998887 58999997333333333456666654 4331 113577776655
No 461
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=28.79 E-value=2.3e+02 Score=23.87 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=44.4
Q ss_pred eEEEecCCC-cHHHHHHHHHCCC-CeEEEeec-hHHHhc-CCC--------CCCeEEEeCCCCCCCCCceEeeehhhhcC
Q 038208 136 SLVDVGGGN-GSFSRIISEAFPG-IKCTVLDL-PHVVAN-LPE--------TDNLKYIAGDMFQFVPPADAFLFKLVFHG 203 (228)
Q Consensus 136 ~vlDvGgG~-G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~-a~~--------~~rv~~~~gD~~~~~p~~D~v~~~~vlh~ 203 (228)
+|.=||+|. |......+....- -+++++|. ++..+. +.. ...+.+..+++ +.+.++|++++..-.-.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~~ 80 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAPQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCCC
Confidence 567788765 3333332233222 37899997 333221 111 22344444443 34567999987654322
Q ss_pred CCh-------hHHHHHHHHHHHHhccC
Q 038208 204 LGD-------EDGLKILKKRREAIASN 223 (228)
Q Consensus 204 ~~d-------~~~~~il~~~~~aL~pg 223 (228)
-+. ..+..+++++.+.++..
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~ 107 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKAS 107 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 23456677777766543
No 462
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=28.59 E-value=89 Score=24.36 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=41.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEeCCCCCCCCCceEe
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL-PHVVANLPE-------------------TDNLKYIAGDMFQFVPPADAF 195 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~-------------------~~rv~~~~gD~~~~~p~~D~v 195 (228)
+|.=||.|.=.+..+++-..-+.+++++|. ++.++.... ..|+++. -|+.+....+|+|
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 455566665443333333333689999999 776665442 2233332 1221123347887
Q ss_pred eehhh--hcCC---ChhHHHHHHHHHHHHhccC
Q 038208 196 LFKLV--FHGL---GDEDGLKILKKRREAIASN 223 (228)
Q Consensus 196 ~~~~v--lh~~---~d~~~~~il~~~~~aL~pg 223 (228)
++.-- .... +-......++.+.+.++++
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~ 113 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPG 113 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSC
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhc
Confidence 65542 2111 1123566777888777774
No 463
>PRK07236 hypothetical protein; Provisional
Probab=28.53 E-value=76 Score=27.52 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=26.5
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
...|+-||+|.+.++.++.-+..+++++++|.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999999887777666666899999997
No 464
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.52 E-value=73 Score=27.58 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=55.9
Q ss_pred ccCCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeC-----CCCCC----CC--CceEe
Q 038208 131 FEGLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPE--TDNLKYIAG-----DMFQF----VP--PADAF 195 (228)
Q Consensus 131 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~--~~rv~~~~g-----D~~~~----~p--~~D~v 195 (228)
+....+||-+|+|+ |.++...++.+-..++++.|+ +.-++.|++ .+.+..... ++.+- +. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 45678999999885 777888888888889999999 888888876 111221111 11110 11 16666
Q ss_pred eehhhhcCCChhHHHHHHHHHHHHhccCCC
Q 038208 196 LFKLVFHGLGDEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 196 ~~~~vlh~~~d~~~~~il~~~~~aL~pgG~ 225 (228)
+-...++ .-++.+..++++||.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRSGGT 268 (354)
T ss_pred EEccCch--------HHHHHHHHHhccCCE
Confidence 6555443 335566778888864
No 465
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=28.36 E-value=3.1e+02 Score=25.81 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHh----cCC----------CCCCeEEEeCCCCCC------C
Q 038208 133 GLGSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVA----NLP----------ETDNLKYIAGDMFQF------V 189 (228)
Q Consensus 133 ~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~----~a~----------~~~rv~~~~gD~~~~------~ 189 (228)
..+++|-.| |+|.++..++++. .+.+++++++ ++-.. ... ...++.++.+|+.+. +
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 345566555 4566666665543 3557777766 22221 110 124689999999862 3
Q ss_pred CCceEeeehh
Q 038208 190 PPADAFLFKL 199 (228)
Q Consensus 190 p~~D~v~~~~ 199 (228)
.+.|+++..-
T Consensus 158 ggiDiVVn~A 167 (576)
T PLN03209 158 GNASVVICCI 167 (576)
T ss_pred cCCCEEEEcc
Confidence 4578776553
No 466
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=28.35 E-value=26 Score=26.49 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=31.9
Q ss_pred EecCCCcHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 038208 139 DVGGGNGSFSRIISEAFPGIKCTVLDLPHVVANLPETDNLKYIA 182 (228)
Q Consensus 139 DvGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~~~~rv~~~~ 182 (228)
=+-||||.=..-.+.++|++++..+--+.....++...+.+.++
T Consensus 63 IliCGtGiG~siaANK~~GiRAA~~~d~~sA~~ar~hNnaNVl~ 106 (148)
T TIGR02133 63 IVIGGSGNGEAIAANKVKGARAALAWDTASAGRARLHNNANVVG 106 (148)
T ss_pred EEEcCCChhheeeecccCCeEEEEECCHHHHHHHHHHcCCcEEE
Confidence 34599999888889999999987776566666666645444444
No 467
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.10 E-value=1.7e+02 Score=25.98 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=41.1
Q ss_pred eEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCceEeeeh
Q 038208 136 SLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQF-------VPPADAFLFK 198 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~-------~p~~D~v~~~ 198 (228)
+|+=+|+ |.++..+++.. .+.+++++|. ++.++.+++...+.++.||..++ ...+|.+++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 3555555 78888777753 3567899998 77676665435688899998762 2247777654
No 468
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=27.85 E-value=84 Score=23.87 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=24.6
Q ss_pred cCCCeEEEecCCCcH------------HHH--HHHHHCCCCeEEEeec
Q 038208 132 EGLGSLVDVGGGNGS------------FSR--IISEAFPGIKCTVLDL 165 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~------------~~~--~l~~~~p~~~~~~~Dl 165 (228)
.....+||+|++.-. ... .+....|+++++++|.
T Consensus 34 ~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~ 81 (153)
T PF00549_consen 34 GGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDI 81 (153)
T ss_dssp CTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEE
T ss_pred CCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEe
Confidence 356799999999873 333 3334568999999985
No 469
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=27.81 E-value=1.6e+02 Score=28.30 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=41.7
Q ss_pred CeEEEecCCC--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHH
Q 038208 135 GSLVDVGGGN--GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLK 211 (228)
Q Consensus 135 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~ 211 (228)
.+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.....|..+...++|+|++.-- +.....
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-----~~~~~~ 78 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-----VLAMEK 78 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-----HHHHHH
Confidence 4677777553 223333333322246888998 55554443211110011111111335788876543 345567
Q ss_pred HHHHHHHHhccC
Q 038208 212 ILKKRREAIASN 223 (228)
Q Consensus 212 il~~~~~aL~pg 223 (228)
+++++...++++
T Consensus 79 vl~~l~~~~~~~ 90 (735)
T PRK14806 79 VLADLKPLLSEH 90 (735)
T ss_pred HHHHHHHhcCCC
Confidence 777777777664
No 470
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=27.74 E-value=1.1e+02 Score=22.49 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=33.7
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccC--CCCCeEeCChhchhhh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVN--GQEEAYGLTASSTLLI 66 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~--~~~~~~~~t~~~~~l~ 66 (228)
++.|+-.|... +++|..| +++-|...|++++.... .+.-...+|+.++.+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34456666554 4677776 89999999999987531 1233466788777544
No 471
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=27.62 E-value=1.1e+02 Score=24.17 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=31.0
Q ss_pred HcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCChh
Q 038208 15 ELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTAS 61 (228)
Q Consensus 15 ~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~~ 61 (228)
++.++..|... ++++..| .+..|...|++++... +...|.+|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCC
Confidence 45667777664 4666666 7889999999998841 2456777764
No 472
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.61 E-value=93 Score=25.83 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=59.5
Q ss_pred CccHHHHHHHHHHhccchhHHHHHHHhhhhhccCCCeEEEecCCCcHHH---------HHHHHHCCCCeEEEeec--hHH
Q 038208 100 NPGINQRFNEAMASDSEIMTSFVVKAECKQIFEGLGSLVDVGGGNGSFS---------RIISEAFPGIKCTVLDL--PHV 168 (228)
Q Consensus 100 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~---------~~l~~~~p~~~~~~~Dl--p~~ 168 (228)
|+. .+.|.+++.......+..... . .......++|||+++..-- ..+.+.. ++ .+.+|- |++
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~-~---~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~-plsIDT~~~~v 81 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLAL-K---QAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DV-PLCIDSPNPAA 81 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHH-H---HHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CC-CEEEeCCCHHH
Confidence 455 567888777655433222222 1 2467899999999986311 1122221 22 367776 677
Q ss_pred HhcCCC----CCCeEEEeCCCCC-C--CC---C--ceEeeehhhhcC--CC--hhHHHHHHHHHHHHhccCCC
Q 038208 169 VANLPE----TDNLKYIAGDMFQ-F--VP---P--ADAFLFKLVFHG--LG--DEDGLKILKKRREAIASNGE 225 (228)
Q Consensus 169 i~~a~~----~~rv~~~~gD~~~-~--~p---~--~D~v~~~~vlh~--~~--d~~~~~il~~~~~aL~pgG~ 225 (228)
++.+-+ .+=|+-+.+.-.. + .+ . +.+|++. .|+ .| .++...+++++.+.+..-|+
T Consensus 82 ~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~--~~~~g~P~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 82 IEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALT--MDDTGIPKDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred HHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEe--cCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 765543 2224444443211 1 22 2 3344332 232 12 24556777777776665554
No 473
>PF07574 SMC_Nse1: Nse1 non-SMC component of SMC5-6 complex; InterPro: IPR011513 Saccharomyces cerevisiae Nse1 (Q07913 from SWISSPROT) forms part of a complex with SMC5-SMC6. This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism [, ]. It is conserved in eukaryotes from yeast to human.; PDB: 3NW0_A.
Probab=27.48 E-value=57 Score=25.82 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=20.8
Q ss_pred HHHHHHhCCceeecccCCCCCeEeCChhc
Q 038208 34 LMRLLVHSGCFNKTKVNGQEEAYGLTASS 62 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~~~~~~~~~t~~~ 62 (228)
+|.-|+..|.|.+.. +|.|.+++.+
T Consensus 172 lL~~lv~~gWl~~s~----~G~y~L~~Ra 196 (200)
T PF07574_consen 172 LLDRLVEDGWLYRSR----EGFYSLGPRA 196 (200)
T ss_dssp HHHHHHHTTSE-EEE----TTEEEE-HHH
T ss_pred HHHHHHHCCCceeCC----CCEEEEChHH
Confidence 999999999998877 7999999865
No 474
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=27.41 E-value=83 Score=22.71 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeCCh
Q 038208 27 RAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGLTA 60 (228)
Q Consensus 27 ~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~t~ 60 (228)
+++|+.| +|+.|...|+++... +..+.|.+..
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~--g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKR--GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecC--CCCCChhhcC
Confidence 5778776 899999999998653 1145666644
No 475
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.24 E-value=70 Score=27.15 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=19.9
Q ss_pred CCCeEEEecC-------------------------CCcHHHHHHHHHC
Q 038208 133 GLGSLVDVGG-------------------------GNGSFSRIISEAF 155 (228)
Q Consensus 133 ~~~~vlDvGg-------------------------G~G~~~~~l~~~~ 155 (228)
+.++|+|||| |||.|+..++++.
T Consensus 125 ~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~L 172 (293)
T TIGR03192 125 AVRTILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLM 172 (293)
T ss_pred CCCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 5678999988 9999999999873
No 476
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=27.11 E-value=75 Score=28.63 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=21.2
Q ss_pred eEEEecCCCcHHHH--HHHHHCCC-CeEEEeech
Q 038208 136 SLVDVGGGNGSFSR--IISEAFPG-IKCTVLDLP 166 (228)
Q Consensus 136 ~vlDvGgG~G~~~~--~l~~~~p~-~~~~~~Dlp 166 (228)
+|+-||||+..+.. .|++.+|. +++++++.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 47889999877544 66777777 899999863
No 477
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=27.11 E-value=2.4e+02 Score=25.68 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=48.2
Q ss_pred eEEEecCCCcHHHHH--HHHHCCCCeEEEeec-hHHHhcCCC------C-----------C-CeEEEeCCCCCCCCCceE
Q 038208 136 SLVDVGGGNGSFSRI--ISEAFPGIKCTVLDL-PHVVANLPE------T-----------D-NLKYIAGDMFQFVPPADA 194 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~--l~~~~p~~~~~~~Dl-p~~i~~a~~------~-----------~-rv~~~~gD~~~~~p~~D~ 194 (228)
+|.=||.|.-.+..+ ++++.++.+++++|. ++.++..+. . . +++ ...|+.+.+..+|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHHhcCCE
Confidence 466778777665444 445455788999998 777766442 0 0 111 11122112345888
Q ss_pred eeehh-hhcC---------CChhHHHHHHHHHHHHhccC
Q 038208 195 FLFKL-VFHG---------LGDEDGLKILKKRREAIASN 223 (228)
Q Consensus 195 v~~~~-vlh~---------~~d~~~~~il~~~~~aL~pg 223 (228)
|++.- +-.+ .+-.......+.+.+.|++|
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~ 120 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCC
Confidence 86643 2221 12235567777788777765
No 478
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=26.92 E-value=1.5e+02 Score=25.27 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=38.1
Q ss_pred CeEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hH----HHhcCC------CCCCeEEEeCCCCCC------CCCceEe
Q 038208 135 GSLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PH----VVANLP------ETDNLKYIAGDMFQF------VPPADAF 195 (228)
Q Consensus 135 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~----~i~~a~------~~~rv~~~~gD~~~~------~p~~D~v 195 (228)
.+||= =||+|..+..++++. .+.+++++|. +. .++... ...+++++.+|+.+. +.++|+|
T Consensus 16 ~~vlV-tGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~V 94 (348)
T PRK15181 16 KRWLI-TGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYV 94 (348)
T ss_pred CEEEE-ECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCEE
Confidence 35443 467888887777755 3457888886 21 121111 125789999999762 2357776
Q ss_pred eeh
Q 038208 196 LFK 198 (228)
Q Consensus 196 ~~~ 198 (228)
+-.
T Consensus 95 iHl 97 (348)
T PRK15181 95 LHQ 97 (348)
T ss_pred EEC
Confidence 533
No 479
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=26.90 E-value=84 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=24.9
Q ss_pred eEEEecCCCcHHHH--HHHHHCCCCeEEEeec
Q 038208 136 SLVDVGGGNGSFSR--IISEAFPGIKCTVLDL 165 (228)
Q Consensus 136 ~vlDvGgG~G~~~~--~l~~~~p~~~~~~~Dl 165 (228)
+++-||||.-.++. .|.+++|+++++++|-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~ 33 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEA 33 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEec
Confidence 67889999877554 7888999999999985
No 480
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=26.78 E-value=2.2e+02 Score=20.54 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=37.5
Q ss_pred hHHHHHHHHHH-cChhhHhhhCCCCcC---HHHHHHHHHhCCceeecccCC--CCCeEeCChhchhhh
Q 038208 5 LSSMSLKCAIE-LSIADIIHCHGRAIT---LSELMRLLVHSGCFNKTKVNG--QEEAYGLTASSTLLI 66 (228)
Q Consensus 5 ~~~~~L~~a~~-lglfd~L~~~~~p~t---~~ell~~L~~~g~l~~~~~~~--~~~~~~~t~~~~~l~ 66 (228)
|..-.|+...+ -.=|..|...-+++| +.+-|+.|...|++++..... ..-.|++|+.++.|.
T Consensus 24 W~~lIl~~L~~g~~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 24 WTLLILRDLFDGPKRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred cHHHHHHHHhcCCCcHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence 44445555444 123666665422243 445899999999999875311 123588998887655
No 481
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=26.75 E-value=1.1e+02 Score=27.41 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCCeEEEecCCC-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 133 GLGSLVDVGGGN-GSFSRIISEAFPGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 133 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
...+|+=+|+|. |......++.. +.+++++|. |.-.+.++. ..++.+ +..+...++|+++... . ..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~-~G~~~~--~~~e~v~~aDVVI~at-----G---~~ 268 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM-EGYEVM--TMEEAVKEGDIFVTTT-----G---NK 268 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh-cCCEEc--cHHHHHcCCCEEEECC-----C---CH
Confidence 467999999886 44444455544 568999998 555555443 122222 1112234578887532 1 13
Q ss_pred HHHHH-HHHHhccCCC
Q 038208 211 KILKK-RREAIASNGE 225 (228)
Q Consensus 211 ~il~~-~~~aL~pgG~ 225 (228)
.++.. ..+.|++||.
T Consensus 269 ~~i~~~~l~~mk~Ggi 284 (413)
T cd00401 269 DIITGEHFEQMKDGAI 284 (413)
T ss_pred HHHHHHHHhcCCCCcE
Confidence 45555 4888999864
No 482
>PLN02688 pyrroline-5-carboxylate reductase
Probab=26.66 E-value=1.8e+02 Score=23.70 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=42.8
Q ss_pred EEEecCCC--cHHHHHHHHHC--CCCeEEEe-ec-hHHHhcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHH
Q 038208 137 LVDVGGGN--GSFSRIISEAF--PGIKCTVL-DL-PHVVANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 137 vlDvGgG~--G~~~~~l~~~~--p~~~~~~~-Dl-p~~i~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
|.=||+|. +.++..+++.. +..+++++ |. ++..+.+.+ ..+... .|..+-...+|+|++.- +++...
T Consensus 3 I~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~~-~~~~e~~~~aDvVil~v-----~~~~~~ 75 (266)
T PLN02688 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKTA-ASNTEVVKSSDVIILAV-----KPQVVK 75 (266)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEEe-CChHHHHhcCCEEEEEE-----CcHHHH
Confidence 44567664 33445555542 23367888 76 544443332 233322 12111123478887654 456677
Q ss_pred HHHHHHHHHhccC
Q 038208 211 KILKKRREAIASN 223 (228)
Q Consensus 211 ~il~~~~~aL~pg 223 (228)
.+++.+...++|+
T Consensus 76 ~vl~~l~~~~~~~ 88 (266)
T PLN02688 76 DVLTELRPLLSKD 88 (266)
T ss_pred HHHHHHHhhcCCC
Confidence 8888887777765
No 483
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=26.56 E-value=1.5e+02 Score=20.35 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=27.0
Q ss_pred ccCCCeEEEecCCCcHHHHHHHHHCC------CCeEEEeec-hHHHh
Q 038208 131 FEGLGSLVDVGGGNGSFSRIISEAFP------GIKCTVLDL-PHVVA 170 (228)
Q Consensus 131 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~Dl-p~~i~ 170 (228)
..+.-.||=+|||.......-....| .+++++.|. |.+++
T Consensus 21 ~~~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlA 67 (100)
T PF14737_consen 21 PDEDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLA 67 (100)
T ss_pred CCCCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHH
Confidence 34567899999999986654443333 466788887 66654
No 484
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.44 E-value=70 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
.|+=||+|.+..+.+++-+.-+.+++++|.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 588899998777666655555788999997
No 485
>PRK09126 hypothetical protein; Provisional
Probab=26.32 E-value=74 Score=27.49 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=25.3
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
.|+-||||.+..+.++.-+-.+++++++|.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 588899999998887776666899999996
No 486
>PRK08655 prephenate dehydrogenase; Provisional
Probab=26.21 E-value=1.4e+02 Score=26.71 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=39.9
Q ss_pred eEEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHH-hcCCCCCCeEEEeCCCCCCCCCceEeeehhhhcCCChhHHHH
Q 038208 136 SLVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVV-ANLPETDNLKYIAGDMFQFVPPADAFLFKLVFHGLGDEDGLK 211 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i-~~a~~~~rv~~~~gD~~~~~p~~D~v~~~~vlh~~~d~~~~~ 211 (228)
+|.=|| |.|..+..+++.. .+.+++++|. ++.. +.+.+ ..+.+ ..|..+...++|+|++.-. .+....
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~-~gv~~-~~~~~e~~~~aDvVIlavp-----~~~~~~ 73 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE-LGVEY-ANDNIDAAKDADIVIISVP-----INVTED 73 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-cCCee-ccCHHHHhccCCEEEEecC-----HHHHHH
Confidence 455566 2333333333321 2356788887 4433 22221 22321 1222222345788877553 344456
Q ss_pred HHHHHHHHhccCC
Q 038208 212 ILKKRREAIASNG 224 (228)
Q Consensus 212 il~~~~~aL~pgG 224 (228)
+++++...++||.
T Consensus 74 vl~~l~~~l~~~~ 86 (437)
T PRK08655 74 VIKEVAPHVKEGS 86 (437)
T ss_pred HHHHHHhhCCCCC
Confidence 7788877777763
No 487
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=26.14 E-value=1.4e+02 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=24.1
Q ss_pred HHHHHHhCCceeecccC--CCCCeEeCChhchhhhh
Q 038208 34 LMRLLVHSGCFNKTKVN--GQEEAYGLTASSTLLIK 67 (228)
Q Consensus 34 ll~~L~~~g~l~~~~~~--~~~~~~~~t~~~~~l~~ 67 (228)
+++-|...|++++.... .+.-...+|+.++.+..
T Consensus 66 ~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 66 TLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 89999999999987531 12335778888875553
No 488
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=26.10 E-value=44 Score=27.97 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=44.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC----CCC-CceEeeehhhhcCCC
Q 038208 136 SLVDVGGGNGSFSRIISEAFPGIK-CTVLDL-PHVVANLPE-TDNLKYIAGDMFQ----FVP-PADAFLFKLVFHGLG 205 (228)
Q Consensus 136 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~~-~~rv~~~~gD~~~----~~p-~~D~v~~~~vlh~~~ 205 (228)
+++|+=||.|.+...+.+.. .+ +..+|+ +..++.-+. .+ ....+|+.+ .+| +.|+++.......++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPKDVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHHT-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--ccccccccccccccccccceEEEeccCCceEe
Confidence 68999999999999999985 44 567788 555544333 22 888899976 266 599998877666554
No 489
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=26.05 E-value=2.3e+02 Score=24.16 Aligned_cols=88 Identities=22% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCCeEEEecCCC-cHHHHHHHHHCCCC-eEEEeec-hHHH-h------cCCC-CCCeEEEeCCCCCCCCCceEeeehhhh
Q 038208 133 GLGSLVDVGGGN-GSFSRIISEAFPGI-KCTVLDL-PHVV-A------NLPE-TDNLKYIAGDMFQFVPPADAFLFKLVF 201 (228)
Q Consensus 133 ~~~~vlDvGgG~-G~~~~~l~~~~p~~-~~~~~Dl-p~~i-~------~a~~-~~rv~~~~gD~~~~~p~~D~v~~~~vl 201 (228)
...+|.=||+|. |......+...+-. +++++|+ ++.. . ++.. ..++....+|+ +.+.++|++++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 456899999876 55555444444443 6899997 2211 1 1111 23456655554 456789999875544
Q ss_pred cCCCh-------hHHHHHHHHHHHHhc
Q 038208 202 HGLGD-------EDGLKILKKRREAIA 221 (228)
Q Consensus 202 h~~~d-------~~~~~il~~~~~aL~ 221 (228)
-.-+. ..+..+++++...++
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~ 110 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVM 110 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22221 235566777766664
No 490
>PRK06474 hypothetical protein; Provisional
Probab=25.94 E-value=94 Score=24.13 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=39.0
Q ss_pred HHHHHHHHHcChhhHhhhCCCCcCHHH---------------HHHHHHhCCceeecccC----CCCCeEeCChhc
Q 038208 7 SMSLKCAIELSIADIIHCHGRAITLSE---------------LMRLLVHSGCFNKTKVN----GQEEAYGLTASS 62 (228)
Q Consensus 7 ~~~L~~a~~lglfd~L~~~~~p~t~~e---------------ll~~L~~~g~l~~~~~~----~~~~~~~~t~~~ 62 (228)
..+|.--.++.|++.|...++++|+.| -|+.|...|++++.... +....|+.++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~ 79 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEED 79 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccce
Confidence 456667788899999987644588887 68899999999976421 112346666543
No 491
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=25.82 E-value=1.2e+02 Score=19.23 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.1
Q ss_pred ChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecc
Q 038208 17 SIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 17 glfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~ 48 (228)
.|.+.|....+|++..| .|..|...|.+++.+
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 45666666226787776 899999999998865
No 492
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=25.82 E-value=83 Score=30.03 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.5
Q ss_pred cCCCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 132 EGLGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 132 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
.+..+|+-||+|.+.++.+++-+..+++++++|.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 3457899999999999998888777899999997
No 493
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=25.73 E-value=2e+02 Score=25.70 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCeEEEecCCCcHHHHHHHHHCC--CCeEEEeechH-----HHhcCCCCCCeEEEeCCCCCC-CCCceEee
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFP--GIKCTVLDLPH-----VVANLPETDNLKYIAGDMFQF-VPPADAFL 196 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dlp~-----~i~~a~~~~rv~~~~gD~~~~-~p~~D~v~ 196 (228)
..+|| |=||+|..+..++++.- +.+++++|... .+.......+++++.+|..++ +-++|+|+
T Consensus 120 ~mkIL-VTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~Vi 189 (436)
T PLN02166 120 RLRIV-VTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIY 189 (436)
T ss_pred CCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEE
Confidence 34555 44678888887777542 45788888521 111111135788999998774 33578664
No 494
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=25.72 E-value=52 Score=23.35 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=24.3
Q ss_pred HHcChhhHhhhCCCCcCHHH------------------HHHHHHhCCceeecc
Q 038208 14 IELSIADIIHCHGRAITLSE------------------LMRLLVHSGCFNKTK 48 (228)
Q Consensus 14 ~~lglfd~L~~~~~p~t~~e------------------ll~~L~~~g~l~~~~ 48 (228)
.|+.|.+.|-.. +++|+.| +|+-|+..|+|+...
T Consensus 4 ~E~~IM~~lW~~-~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~ 55 (115)
T PF03965_consen 4 LELEIMEILWES-GEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREK 55 (115)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEee
Confidence 455566666665 3466655 899999999999876
No 495
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=25.71 E-value=64 Score=16.84 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=15.7
Q ss_pred hhhHhhhCC-CCcCHHHHHHHHHh
Q 038208 18 IADIIHCHG-RAITLSELMRLLVH 40 (228)
Q Consensus 18 lfd~L~~~~-~p~t~~ell~~L~~ 40 (228)
+|..+..++ |-++.+|+.+.|.+
T Consensus 5 ~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 5 AFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455665554 78888887777654
No 496
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=25.63 E-value=80 Score=22.91 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=30.6
Q ss_pred cCHHH---HHHHHHhCCceeecccCCCCCeEeCChhchhhhhCCC
Q 038208 29 ITLSE---LMRLLVHSGCFNKTKVNGQEEAYGLTASSTLLIKENP 70 (228)
Q Consensus 29 ~t~~e---ll~~L~~~g~l~~~~~~~~~~~~~~t~~~~~l~~~~~ 70 (228)
+.+.+ +++++..+|+++.. +|...+|+.++.++..+.
T Consensus 9 ~eiDdL~p~~eAaelLgf~~~~-----~Gdi~LT~~G~~f~~a~~ 48 (120)
T PF09821_consen 9 LEIDDLLPIVEAAELLGFAEVE-----EGDIRLTPLGRRFAEADI 48 (120)
T ss_pred CcHHHHHHHHHHHHHcCCeeec-----CCcEEeccchHHHHHCCh
Confidence 45556 78999999999998 589999999997776554
No 497
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.58 E-value=71 Score=20.29 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=15.4
Q ss_pred ecCCCcHHH-HHHHHHCCCCeEEEeec
Q 038208 140 VGGGNGSFS-RIISEAFPGIKCTVLDL 165 (228)
Q Consensus 140 vGgG~G~~~-~~l~~~~p~~~~~~~Dl 165 (228)
||+|.+.++ ...+++. +.+++++|.
T Consensus 2 iGaG~sGl~aA~~L~~~-g~~v~v~E~ 27 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKA-GYRVTVFEK 27 (68)
T ss_dssp ES-SHHHHHHHHHHHHT-TSEEEEEES
T ss_pred EeeCHHHHHHHHHHHHC-CCcEEEEec
Confidence 688855544 4444443 779999995
No 498
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=25.54 E-value=1.2e+02 Score=25.54 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=40.8
Q ss_pred EEEecCCCcHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCCceEeeehhhhcCCChhHHH
Q 038208 137 LVDVGGGNGSFSRIISEAF--PGIKCTVLDL-PHVVANLPETDNLKYIAGDMFQ---FVPPADAFLFKLVFHGLGDEDGL 210 (228)
Q Consensus 137 vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~~~~rv~~~~gD~~~---~~p~~D~v~~~~vlh~~~d~~~~ 210 (228)
|-=||+|. .+..++++. .+.+++++|. ++.++.+.+. .+... .+..+ .....|+|++. .++....
T Consensus 3 Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-g~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~~~~ 73 (298)
T TIGR00872 3 LGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-RTTGV-ANLRELSQRLSAPRVVWVM-----VPHGIVD 73 (298)
T ss_pred EEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-CCccc-CCHHHHHhhcCCCCEEEEE-----cCchHHH
Confidence 44466654 343333322 3567888998 6555544331 11111 11111 12346777654 3444667
Q ss_pred HHHHHHHHHhccC
Q 038208 211 KILKKRREAIASN 223 (228)
Q Consensus 211 ~il~~~~~aL~pg 223 (228)
.+++.+...|++|
T Consensus 74 ~v~~~l~~~l~~g 86 (298)
T TIGR00872 74 AVLEELAPTLEKG 86 (298)
T ss_pred HHHHHHHhhCCCC
Confidence 7778888877775
No 499
>PRK07045 putative monooxygenase; Reviewed
Probab=25.47 E-value=82 Score=27.26 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=27.4
Q ss_pred CCeEEEecCCCcHHHHHHHHHCCCCeEEEeec
Q 038208 134 LGSLVDVGGGNGSFSRIISEAFPGIKCTVLDL 165 (228)
Q Consensus 134 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 165 (228)
...|+=||||.+..+.++.-+..+.+++++|.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 34799999999998888877777899999996
No 500
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.41 E-value=1.3e+02 Score=22.08 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=34.4
Q ss_pred HHHHHcChhhHhhhCCCCcCHHH--------------HHHHHHhCCceeecccCCCCCeEeC
Q 038208 11 KCAIELSIADIIHCHGRAITLSE--------------LMRLLVHSGCFNKTKVNGQEEAYGL 58 (228)
Q Consensus 11 ~~a~~lglfd~L~~~~~p~t~~e--------------ll~~L~~~g~l~~~~~~~~~~~~~~ 58 (228)
+..+...|.+.+..+ |.+|..| .++.|++.|-|...+. .|.|.-
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~~G~---~GvF~s 67 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVARGDLYRHGR---SGVFPS 67 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeCCC---cccccc
Confidence 456777888999888 6999988 8999999999999851 255643
Done!