BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038213
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 1 LSRQNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L R I TF DD +L +G EI +L+ AI+ S I V + S GYA S+WCL +L +I+ +
Sbjct: 59 LRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQ 118
Query: 60 KEYA-QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSS 118
+E +I++P+FY VDPSDVR+Q G + F K K + + +Q+W++ALK+ L
Sbjct: 119 EEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN--KFDGQTIQNWKDALKKVGDLKG 176
Query: 119 FH 120
+H
Sbjct: 177 WH 178
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 1 LSRQNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L R++I+TF DD +L G S L + IE S +V++ SE YA+S WCLD+LV I++ +
Sbjct: 32 LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91
Query: 60 KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLS 117
K+ + V+P+FY V+P+ VR Q G F K R + EK+ WR AL A LS
Sbjct: 92 KKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLS 147
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 43 ASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF 85
A+ R L ++I +G+ E Q V+P + P D + Q+G+F
Sbjct: 527 AAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRDYKGQIGAF 569
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 17 GDEISESLVNAIEASAISVILFSEGYASSRWC 48
G ISE++V+ IE S S+ + S + + WC
Sbjct: 77 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108
>pdb|1TP7|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|B Chain B, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|C Chain C, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|D Chain D, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
Length = 460
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 8 TFVDDQLSRGDEISESLVNAIEASAIS-VILFSEGYAS 44
TF+ D+L + D+I+ IEAS+I+ ILF Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
>pdb|1XR7|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
pdb|1XR7|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
Length = 460
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 8 TFVDDQLSRGDEISESLVNAIEASAIS-VILFSEGYAS 44
TF+ D+L + D+I+ IEAS+I+ ILF Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 15 SRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVF 70
+ G I L A+ +S V+L + G+ WC ++++ L IP+
Sbjct: 49 TPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 15 SRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVF 70
+ G I L A+ +S V+L + G+ WC ++++ L IP+
Sbjct: 49 TPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 15 SRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVF 70
+ G I L A+ +S V+L + G+ WC ++++ L IP+
Sbjct: 49 TPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 15 SRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVF 70
+ G I L A+ +S V+L + G+ WC ++++ L IP+
Sbjct: 48 TPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 103
>pdb|3UQY|L Chain L, H2-Reduced Structure Of E. Coli Hydrogenase-1
pdb|3UQY|M Chain M, H2-Reduced Structure Of E. Coli Hydrogenase-1
pdb|3USC|L Chain L, Crystal Structure Of E. Coli Hydrogenase-1 In A
Ferricyanide-Oxidized Form
pdb|3USC|M Chain M, Crystal Structure Of E. Coli Hydrogenase-1 In A
Ferricyanide-Oxidized Form
pdb|3USE|L Chain L, Crystal Structure Of E. Coli Hydrogenase-1 In Its
As-Isolated Form
pdb|3USE|M Chain M, Crystal Structure Of E. Coli Hydrogenase-1 In Its
As-Isolated Form
pdb|4GD3|L Chain L, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|M Chain M, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|J Chain J, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|K Chain K, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
Length = 582
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 44 SSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF 85
+ R L I +GK + Q V+P + P D + Q+G++
Sbjct: 507 APRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 51 KLVKILEGKKE------YAQIVIPVFYRVDP-SDVRNQMGSFGILF-SKLEERLKVNTEK 102
K+ ++EGK + YAQI+ ++ P S V + GI+ + E++LK+ EK
Sbjct: 324 KMEDVMEGKGKLTLRDVYAQII--ALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEK 381
Query: 103 LQSWRNAL 110
++ W AL
Sbjct: 382 IRRWLAAL 389
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 51 KLVKILEGKKE------YAQIVIPVFYRVDP-SDVRNQMGSFGILF-SKLEERLKVNTEK 102
K+ ++EGK + YAQI+ ++ P S V + GI+ + E++LK+ EK
Sbjct: 317 KMEDVMEGKGKLTLRDVYAQII--ALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEK 374
Query: 103 LQSWRNAL 110
++ W AL
Sbjct: 375 IRRWLAAL 382
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 51 KLVKILEGKKE------YAQIVIPVFYRVDP-SDVRNQMGSFGILF-SKLEERLKVNTEK 102
K+ ++EGK + YAQI+ ++ P S V + GI+ + E++LK+ EK
Sbjct: 316 KMEDVMEGKGKLTLRDVYAQII--ALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEK 373
Query: 103 LQSWRNAL 110
++ W AL
Sbjct: 374 IRRWLAAL 381
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 21 SESLVNAIEASAISVILFSEGYA-SSRWCLDKL-VKILEGKKEY--AQIVI--------P 68
S+S A+ + V+LF+ RW D+L + + + ++ Y Q+ I
Sbjct: 299 SQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVGQVSIGDENSAYSS 358
Query: 69 VFYRVDPSDVRNQMGS---FGILFSKLEERLKVNTEKLQSWRN 108
V Y+ D +++ S + ++F++L L++ LQSW+N
Sbjct: 359 VLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKN 401
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 21 SESLVNAIEASAISVILFSEGYA-SSRWCLDKL-VKILEGKKEY--AQIVI--------P 68
S+S A+ + V+LF+ RW D+L + + + ++ Y Q+ I
Sbjct: 299 SQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVGQVSIGDENSAYSS 358
Query: 69 VFYRVDPSDVRNQMGS---FGILFSKLEERLKVNTEKLQSWRN 108
V Y+ D +++ S + ++F++L L++ LQSW+N
Sbjct: 359 VLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKN 401
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 21 SESLVNAIEASAISVILFSEGYA-SSRWCLDKL-VKILEGKKEY--AQIVI--------P 68
S+S A+ + V+LF+ RW D+L + + + ++ Y Q+ I
Sbjct: 299 SQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVGQVSIGDENSAHSS 358
Query: 69 VFYRVDPSDVRNQMGS---FGILFSKLEERLKVNTEKLQSWRN 108
V Y+ D +++ S + ++F++L L++ LQSW+N
Sbjct: 359 VLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKN 401
>pdb|4H7N|A Chain A, The Structure Of Putative Aldehyde Dehydrogenase Puta
From Anabaena Variabilis.
pdb|4H7N|B Chain B, The Structure Of Putative Aldehyde Dehydrogenase Puta
From Anabaena Variabilis.
pdb|4H7N|C Chain C, The Structure Of Putative Aldehyde Dehydrogenase Puta
From Anabaena Variabilis.
pdb|4H7N|D Chain D, The Structure Of Putative Aldehyde Dehydrogenase Puta
From Anabaena Variabilis
Length = 474
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 14 LSRGDEISESLVNAIEASAISVILFSEGYAS-SRWC 48
LSR ++++E+LVN +I+V+ AS RWC
Sbjct: 64 LSRREQLTEALVNDTGRLSITVLEIDSFLASIDRWC 99
>pdb|1XR6|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 1b
Length = 460
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 8 TFVDDQLSRGDEISESLVNAIEASAIS-VILFSEGYAS 44
TF+ D+L + ++IS IEAS+I+ ILF + +
Sbjct: 156 TFLKDELRKKEKISAGKTRVIEASSINDTILFRTTFGN 193
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 43 ASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF 85
A+ R L + I +GK + Q V+P + P D + +G+F
Sbjct: 520 AAPRGALAHWIVIEKGKIKNYQCVVPTTWNGSPRDPKGNIGAF 562
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 56 LEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQS 105
LEG + Q+ +P Y P DV + G + + E++L+ E+L++
Sbjct: 78 LEGAVQAGQLKVPPGY--HPLDVEKEWGKLHVAILEREKQLRSEFERLEA 125
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 LSRQNIQTFVDD-QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L + + DD L GD + S+ + +S +++ S + W +L + + +
Sbjct: 43 LRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLE 102
Query: 60 KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNT 100
++P++++V ++++ SF + ++L NT
Sbjct: 103 SSGRSRILPIWHKVS----KDEVASFS---PTMADKLAFNT 136
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 56 LEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQ 104
LEG + Q+ +P Y P DV + G + + E++L+ E+L+
Sbjct: 78 LEGAVQAGQLKVPPGY--HPLDVEKEWGKLHVAILEREKQLRSEFERLE 124
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 75 PSDVRNQMGSFGILFSKLEERLKVNTEK--LQSWRNALKEAASLSSFHSLN 123
P D+R F +LF +E+ +K +SWR A E + FH++N
Sbjct: 186 PVDMR----EFVLLFMVFDEKKSWYYDKKPTRSWRRASSEVKNSHEFHAIN 232
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 21 SESLVNAIEASAISVILFSEGYA-SSRWCLDKL-VKILEGKKEY--AQIVI--------P 68
S+S A+ + V+LF+ RW D+L + + + ++ Y Q+ I
Sbjct: 299 SQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVGQVSIGDENSAYSS 358
Query: 69 VFYRVDPSDVRNQMGS---FGILFSKLEERLKVNTEKLQSWRN 108
V Y+ D +++ S + ++F++L L++ LQSW+N
Sbjct: 359 VLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKN 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,122,709
Number of Sequences: 62578
Number of extensions: 108365
Number of successful extensions: 300
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 26
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)