BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038213
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L+ + I+TF DD+ L G I L AIE S ++++FSE YA+SRWCL++LVKI+E K
Sbjct: 35 LNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECK 94
Query: 60 KEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASL 116
+ Q VIP+FY VDPS VRNQ SF F + E + K + E +Q WR AL EAA+L
Sbjct: 95 TRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANL 151
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
Query: 4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
+ I TF DD + R I L AI S ISV+LFSE YASS WCLD+L++I++ K+E
Sbjct: 37 KGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQG 96
Query: 64 QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLN 123
V+PVFY+VDPSD+R Q G FG+ F LE E+ +WR AL +AA++ H N
Sbjct: 97 LKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 4/113 (3%)
Query: 8 TFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVI 67
TF+DD++ R I L++AI+ S I++++FS+ YASS WCL++LV+I + Q+VI
Sbjct: 41 TFIDDEIERSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVI 100
Query: 68 PVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTE-KLQSWRNALKEAASLSSF 119
P+F+ VD S+V+ Q G FG +F EE K +E + QSW+ AL A ++ +
Sbjct: 101 PIFFHVDASEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMAGY 150
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
L ++ I F+D+Q RG + SL + I S I++++FSEGY S WC+D+LVKI E
Sbjct: 45 LKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFSEGYCESHWCMDELVKIKEYMD 103
Query: 61 EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSS 118
+ I+IP+FYR+D V++ G FG F L ++ + +KL W AL L S
Sbjct: 104 QNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHKWTEALFSVCELFS 161
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63
+ I F D+ RG ++ L IE S ++V +FSE Y S WCLD+LVK+ E ++
Sbjct: 384 EKINVFTDEVELRGTNLN-YLFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGK 442
Query: 64 QIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNAL 110
+V+PVFYR++ + + MG+FG LE + E++Q W+ AL
Sbjct: 443 LVVVPVFYRLNATACKRFMGAFGDNLRNLEWEYRSEPERIQKWKEAL 489
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 5 NIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQ 64
NI F+D G ++ V I+ S ++V++FS+ Y SS WCLD+L +I + +
Sbjct: 41 NINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGL 99
Query: 65 IVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
IP+FY++ PS V G FG F L+E+ K + E+ Q W+ AL+ L
Sbjct: 100 NAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
L NI F+D+ G E++ +L+ IE S +++++FS + S CL++L KI E K
Sbjct: 38 LREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKD 96
Query: 61 EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALK 111
+ IVIP+FY+V PS V+ G FG F LE + Q W+ AL+
Sbjct: 97 QGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHMLPITQKWKEALE 147
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana
GN=WRKY19 PE=2 SV=1
Length = 1895
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 16 RGDEISESL--VNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRV 73
RG + E V+A+ + +I+ + Y S L+ ILE + ++V P+FYR+
Sbjct: 695 RGISVYEKFNEVDALPKCRVLIIVLTSTYVPS-----NLLNILEHQHTEDRVVYPIFYRL 749
Query: 74 DPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSF 119
P D + SK ER + E + W+ ALKE + +
Sbjct: 750 SPYDF--------VCNSKNYERFYLQDEP-KKWQAALKEITQMPGY 786
>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis
thaliana GN=PP2A7 PE=4 SV=1
Length = 332
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
L +NI F+D++ RG + ++L I+ S IS+ +FSE S+ + L+K
Sbjct: 65 LQNKNINVFIDEEEVRGKGL-KNLFKRIQDSKISLAIFSE----SKCDFNDLLK----NN 115
Query: 61 EYAQIVIPVFYRVDPS 76
E A IP+FY+VD +
Sbjct: 116 ESADEAIPIFYKVDAT 131
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana
GN=WRKY16 PE=2 SV=1
Length = 1372
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 1 LSRQNIQ-TFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L R+ + F+D S +E S+S+V E + +SV++ S LDKLVK+L+ +
Sbjct: 28 LQRKGVNDVFIDSDDSLSNE-SQSMV---ERARVSVMILPGNRTVS---LDKLVKVLDCQ 80
Query: 60 KEYAQIVIPVFYRVDPSDV 78
K Q+V+PV Y V S+
Sbjct: 81 KNKDQVVVPVLYGVRSSET 99
>sp|P17632|MBHL_RUBGE Uptake hydrogenase large subunit OS=Rubrivivax gelatinosus GN=hupB
PE=3 SV=1
Length = 618
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 43 ASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF 85
A+ R L ++I +GK E Q V+P + P D + Q+G+F
Sbjct: 527 AAPRGMLGHWIRIKDGKIENYQCVVPTTWNGSPRDAKGQIGAF 569
>sp|Q9Y2C9|TLR6_HUMAN Toll-like receptor 6 OS=Homo sapiens GN=TLR6 PE=1 SV=2
Length = 796
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWC 48
L +++IQ + ++ G I E+++N IE S S+ + S + S WC
Sbjct: 664 LEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWC 712
>sp|P31891|MBHL_CUPNH Uptake hydrogenase large subunit OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxG PE=1
SV=4
Length = 618
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 43 ASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF 85
A+ R L ++I +G+ E Q V+P + P D + Q+G+F
Sbjct: 527 AAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRDYKGQIGAF 569
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2
Length = 1613
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 1 LSRQNIQTFVDD---QLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILE 57
L R+ I FVD Q ++ I ++ A + V++ E W K +K+++
Sbjct: 40 LRREGISVFVDACGLQETKFFSIKQNQPLTDGARVLVVVISDEVEFYDPW-FPKFLKVIQ 98
Query: 58 GKKEYAQIVIPVFYRVD 74
G + +V+PVFY VD
Sbjct: 99 GWQNNGHVVVPVFYGVD 115
>sp|Q704V6|TLR6_BOVIN Toll-like receptor 6 OS=Bos taurus GN=TLR6 PE=2 SV=1
Length = 793
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 17 GDEISESLVNAIEASAISVILFSEGYASSRWC 48
G I E+++N IE S S+ + S + S WC
Sbjct: 681 GKSIVENIINCIEKSYKSIFVLSPNFVQSEWC 712
>sp|Q47GH9|SYS_DECAR Serine--tRNA ligase OS=Dechloromonas aromatica (strain RCB)
GN=serS PE=3 SV=1
Length = 427
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 3 RQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEY 62
R N+ + RG I S +A+EA ++ ++ + R L K + +L+GK E
Sbjct: 8 RSNLDAVAEGLAKRGKPIDFSEFSALEAERKTLQTRTQDLQAQRNSLSKQIGMLKGKGE- 66
Query: 63 AQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERL 96
D S+V Q+GS G E RL
Sbjct: 67 -----------DASEVMAQVGSIGDELKASEARL 89
>sp|P15284|MBHL_RHOCA Uptake hydrogenase large subunit OS=Rhodobacter capsulatus GN=hupB
PE=3 SV=1
Length = 597
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 44 SSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF--GILFSKLE 93
+ R L VKI +G+ E Q V+P + P D + +G+F +L +K+E
Sbjct: 507 APRGALGHWVKIKDGRIENYQCVVPTTWNGSPRDSKGNIGAFEASLLNTKME 558
>sp|P33374|MBHL_ALCHY Uptake hydrogenase large subunit OS=Alcaligenes hydrogenophilus
GN=hupL PE=3 SV=2
Length = 621
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 43 ASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSF 85
A+ R ++I +GK E Q V+P + P D + Q+G+F
Sbjct: 530 AAPRGACGHWIRIKDGKIENYQCVVPTTWNGSPRDSKGQIGAF 572
>sp|Q11D15|RS16_MESSB 30S ribosomal protein S16 OS=Mesorhizobium sp. (strain BNC1)
GN=rpsP PE=3 SV=1
Length = 134
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 51 KLVKILEGKKEYAQIVIPVFYRVDPSDVR--NQMGSFGILFSKLEERLKVNTEKLQSW 106
+L + K+ Y IV+ R P D R Q+GS+ + K ER+K+N E+++ W
Sbjct: 6 RLARAGSKKRPYYHIVV-ADVRA-PRDGRFIEQIGSWNPMLPKDSERVKLNEERIKHW 61
>sp|Q1GDC7|RS16_RUEST 30S ribosomal protein S16 OS=Ruegeria sp. (strain TM1040) GN=rpsP
PE=3 SV=1
Length = 121
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 70 FYRVDPSDVR--------NQMGSFGILFSK-LEERLKVNTEKLQSW 106
FYR+ +D R ++G++ L K EER+K++ EK+Q+W
Sbjct: 17 FYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAW 62
>sp|Q9EPQ1|TLR1_MOUSE Toll-like receptor 1 OS=Mus musculus GN=Tlr1 PE=1 SV=1
Length = 795
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWC 48
L + +IQ + ++ G I E+++N IE S S+ + S + S WC
Sbjct: 662 LEKDDIQICLHERNFVPGKSIVENIINFIEKSYKSIFVLSPHFIQSEWC 710
>sp|Q6R5N8|TLR13_MOUSE Toll-like receptor 13 OS=Mus musculus GN=Tlr13 PE=1 SV=1
Length = 991
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 17 GDEISESLVNAIEASAISVILFSEGYASSRWC-LDKLVKILEGKKEYAQIVIPVFYRVDP 75
G +I E++ NAI S ++ + S Y S WC L+ + ++ E+ ++I +F P
Sbjct: 876 GIDIFENIQNAINTSRKTLCVVSNHYLHSEWCRLEVQLASMKMFYEHKDVIILIFLEEIP 935
Query: 76 S 76
+
Sbjct: 936 N 936
>sp|Q54EF5|OSB12_DICDI Oxysterol-binding protein 12 OS=Dictyostelium discoideum GN=osbL
PE=3 SV=1
Length = 402
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 44 SSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERLKVN 99
S R L L+K L KE +V+P F + P R+ + SF +F+ ++E K+N
Sbjct: 12 SKRVILSSLIKQLSPNKEIKHMVLPCFL-LQP---RSTLESFTDMFTYIDELYKIN 63
>sp|O86186|GRDF_EUBAC Sarcosine reductase complex component B subunit beta OS=Eubacterium
acidaminophilum GN=grdF PE=3 SV=3
Length = 436
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 15 SRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVD 74
++G+ + V I F E S R +D LV L G+K + +PVF RV
Sbjct: 159 AKGELVGPPEVEGYHMMGIRTNFFHEKRGSER-AIDMLVNKLNGEKFETEYPMPVFDRVP 217
Query: 75 PSDVRNQM 82
P+ M
Sbjct: 218 PNPAVKDM 225
>sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens GN=TLR10 PE=1 SV=2
Length = 811
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 17 GDEISESLVNAIEASAISVILFSEGYASSRWC 48
G ISE++V+ IE S S+ + S + + WC
Sbjct: 675 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 706
>sp|Q2KWF5|SYS_BORA1 Serine--tRNA ligase OS=Bordetella avium (strain 197N) GN=serS PE=3
SV=1
Length = 449
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKK 60
L R+++QT VD SRG N +E+ V +E + R L K + L+ K
Sbjct: 6 LLRKDLQTVVDRLQSRGVSFDTERFNDLESRRKLVQTETEALQARRNALAKQIGQLKAKG 65
Query: 61 EYAQIVIPVFYRVDPSDVRNQMGSFGILFSKLEERL 96
E A V+ + P ++ S +L +L E L
Sbjct: 66 EDASAVMAESQAL-PGQLKQLEESLAMLQQQLNELL 100
>sp|Q7VW08|SYS_BORPE Serine--tRNA ligase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=serS PE=3 SV=1
Length = 451
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L R+++QT VD SRG + + N +E+ +V +E + R L K + L+GK
Sbjct: 6 LLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGK 64
>sp|Q7W545|SYS_BORPA Serine--tRNA ligase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=serS PE=3 SV=1
Length = 451
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L R+++QT VD SRG + + N +E+ +V +E + R L K + L+GK
Sbjct: 6 LLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGK 64
>sp|Q7WCM7|SYS_BORBR Serine--tRNA ligase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=serS PE=3 SV=1
Length = 451
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 1 LSRQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK 59
L R+++QT VD SRG + + N +E+ +V +E + R L K + L+GK
Sbjct: 6 LLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGK 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,148,457
Number of Sequences: 539616
Number of extensions: 1354294
Number of successful extensions: 4632
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4608
Number of HSP's gapped (non-prelim): 38
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)