Query 038213
Match_columns 125
No_of_seqs 157 out of 1104
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 3.5E-48 1.2E-52 293.1 7.2 123 1-125 59-183 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 2.1E-48 7.3E-53 288.7 6.0 120 1-122 32-152 (176)
3 3h16_A TIR protein; bacteria T 99.9 2E-29 6.8E-34 181.6 -1.7 108 1-113 43-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.8 3.7E-23 1.3E-27 148.5 -4.7 104 4-110 37-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.7 6.7E-20 2.3E-24 131.5 -0.8 75 4-78 33-110 (149)
6 2j67_A TOLL like receptor 10; 99.7 3.5E-19 1.2E-23 131.6 -0.1 70 4-73 63-134 (178)
7 1t3g_A X-linked interleukin-1 99.7 1.1E-18 3.8E-23 126.6 1.9 74 3-76 39-115 (159)
8 2js7_A Myeloid differentiation 99.7 6.4E-19 2.2E-23 127.9 -1.2 72 4-75 43-117 (160)
9 3j0a_A TOLL-like receptor 5; m 99.4 7.8E-14 2.7E-18 120.8 3.8 74 3-76 700-775 (844)
10 3hyn_A Putative signal transdu 88.7 0.57 2E-05 34.5 4.5 66 18-86 67-133 (189)
11 1eiw_A Hypothetical protein MT 84.3 0.33 1.1E-05 32.6 1.2 31 27-57 35-65 (111)
12 4a6h_A Phosphatidylinositol 4, 48.6 11 0.00038 24.9 2.4 20 98-117 101-120 (120)
13 3dt5_A Uncharacterized protein 47.6 7 0.00024 26.0 1.2 57 23-79 18-78 (135)
14 2d00_A V-type ATP synthase sub 46.4 27 0.00092 22.8 4.1 38 4-44 21-58 (109)
15 3ro3_B Minsc, peptide of prote 40.2 22 0.00075 16.9 2.0 15 100-114 7-21 (22)
16 1upq_A PEPP1; PH domain, phosp 39.8 20 0.0007 22.5 2.6 23 98-120 92-114 (123)
17 2jug_A TUBC protein; docking d 38.9 8.9 0.00031 23.4 0.7 35 1-35 14-52 (78)
18 1byr_A Protein (endonuclease); 37.8 32 0.0011 22.5 3.4 29 15-43 10-38 (155)
19 2yry_A Pleckstrin homology dom 37.8 24 0.00082 22.1 2.7 19 98-116 103-121 (122)
20 1v5p_A Pleckstrin homology dom 36.8 23 0.00079 23.3 2.6 20 98-117 103-122 (126)
21 2coc_A FYVE, rhogef and PH dom 34.6 27 0.00094 22.6 2.6 18 98-115 89-106 (112)
22 2d9v_A Pleckstrin homology dom 34.3 32 0.0011 22.3 2.9 22 98-119 97-118 (130)
23 2i5f_A Pleckstrin; PH domain, 33.4 30 0.001 21.0 2.6 17 98-114 92-108 (109)
24 2cof_A Protein KIAA1914; PH do 32.8 29 0.00098 21.5 2.4 19 98-116 84-102 (107)
25 2nrl_A Myoglobin; transport pr 29.8 17 0.00058 24.4 0.9 44 71-117 93-136 (147)
26 3aon_B V-type sodium ATPase su 29.0 26 0.0009 23.2 1.8 38 3-44 19-56 (115)
27 2w2x_D 1-phosphatidylinositol- 28.8 34 0.0012 22.1 2.3 19 98-116 102-120 (124)
28 1dro_A Beta-spectrin; cytoskel 28.6 41 0.0014 21.4 2.7 20 98-117 102-121 (122)
29 1wgq_A FYVE, rhogef and PH dom 28.4 40 0.0014 20.7 2.5 18 98-115 86-103 (109)
30 3cxb_B Pleckstrin homology dom 28.3 41 0.0014 21.2 2.6 18 98-115 84-101 (112)
31 1x1g_A Pleckstrin 2; PH domain 28.2 41 0.0014 21.2 2.6 19 98-116 107-125 (129)
32 1tu9_A Hypothetical protein PA 28.1 19 0.00066 23.5 1.0 42 71-116 84-127 (134)
33 2i4r_A V-type ATP synthase sub 27.8 22 0.00077 23.1 1.2 39 4-44 27-65 (102)
34 2pp6_A Gifsy-2 prophage ATP-bi 27.8 10 0.00035 25.1 -0.4 22 23-44 43-64 (102)
35 3aj4_A Pleckstrin homology dom 27.7 43 0.0015 20.6 2.6 17 98-114 94-110 (112)
36 1x1f_A Signal-transducing adap 26.7 42 0.0014 22.9 2.5 21 98-118 96-116 (149)
37 2dkp_A Pleckstrin homology dom 26.6 44 0.0015 21.0 2.5 19 98-116 102-120 (128)
38 1wjm_A Beta-spectrin III; PH d 26.5 40 0.0014 21.3 2.3 18 98-115 100-117 (123)
39 1x05_A Pleckstrin; PH domain, 26.3 50 0.0017 20.8 2.8 19 98-116 103-121 (129)
40 1v89_A Hypothetical protein KI 25.4 48 0.0017 20.3 2.5 19 98-116 95-113 (118)
41 2d9y_A Pleckstrin homology dom 25.4 47 0.0016 20.4 2.5 20 98-117 92-111 (117)
42 2lul_A Tyrosine-protein kinase 25.1 47 0.0016 22.6 2.6 19 98-116 104-122 (164)
43 1u5d_A SKAP55, SRC kinase-asso 24.9 47 0.0016 19.9 2.3 18 98-115 88-105 (108)
44 4hde_A SCO1/SENC family lipopr 24.7 52 0.0018 22.2 2.8 55 16-76 21-79 (170)
45 1v88_A Oxysterol binding prote 24.7 54 0.0019 21.6 2.8 20 98-117 107-126 (130)
46 2dn6_A KIAA0640 protein; PH do 24.2 48 0.0016 20.3 2.3 19 98-116 86-104 (115)
47 1egw_A MADS box transcription 24.1 7.4 0.00025 24.3 -1.6 31 29-59 38-68 (77)
48 2dhk_A TBC1 domain family memb 24.0 52 0.0018 20.7 2.5 17 98-114 87-103 (119)
49 2d9x_A Oxysterol binding prote 24.0 48 0.0016 20.8 2.3 20 98-117 87-106 (120)
50 3g46_A Globin-1; oxygen transp 23.8 26 0.0009 23.4 1.1 41 71-115 104-144 (146)
51 4h3d_A 3-dehydroquinate dehydr 23.2 28 0.00096 26.0 1.2 54 9-63 116-169 (258)
52 2i2x_B MTAC, methyltransferase 23.1 64 0.0022 23.8 3.2 63 1-72 147-210 (258)
53 1fgy_A GRP1; PH domain, signal 23.0 52 0.0018 20.5 2.3 18 98-115 103-120 (127)
54 1btn_A Beta-spectrin; signal t 22.7 49 0.0017 19.9 2.1 16 98-113 91-106 (106)
55 1unq_A RAC-alpha serine/threon 21.6 57 0.0019 20.5 2.3 18 98-115 93-110 (125)
56 1sct_A Hemoglobin II (carbonmo 21.6 48 0.0016 22.1 2.0 45 71-116 105-149 (150)
57 3ubc_A Hemoglobin-like flavopr 21.3 51 0.0017 21.3 2.1 42 71-116 84-128 (131)
58 2j59_M RHO-GTPase activating p 20.7 65 0.0022 21.5 2.6 19 98-116 94-112 (168)
59 2cod_A Centaurin-delta 1; ARF 20.7 68 0.0023 19.8 2.5 17 98-114 82-98 (115)
60 2f62_A Nucleoside 2-deoxyribos 20.4 55 0.0019 22.7 2.2 55 2-57 37-96 (161)
61 2w72_C Human hemoglobin A; iro 20.4 33 0.0011 22.6 1.0 42 71-116 91-135 (141)
62 1pls_A Pleckstrin homology dom 20.3 70 0.0024 19.6 2.5 19 98-116 84-102 (113)
63 1v5u_A SBF1, SET binding facto 20.2 53 0.0018 20.1 1.9 19 98-116 94-112 (117)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.5e-48 Score=293.09 Aligned_cols=123 Identities=41% Similarity=0.750 Sum_probs=116.5
Q ss_pred CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhc-cCceeeeEEeecCCccc
Q 038213 1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKE-YAQIVIPVFYRVDPSDV 78 (125)
Q Consensus 1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~-~~~~ViPVfy~v~psdV 78 (125)
|.++||++|+|++ +++|+.|.++|++||++|+++|||||+||++|.|||+||++|++|+++ ++++||||||+|+|++|
T Consensus 59 L~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~V 138 (204)
T 3ozi_A 59 LRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDV 138 (204)
T ss_dssp HHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHH
T ss_pred HHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHH
Confidence 5689999999987 999999999999999999999999999999999999999999999875 68999999999999999
Q ss_pred ccccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccCCC
Q 038213 79 RNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSLNMR 125 (125)
Q Consensus 79 r~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~ 125 (125)
|+|+|.||++|.+|++++ +.+++++||.||++||+++||++.+++
T Consensus 139 r~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 139 RHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp HHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred HhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCC
Confidence 999999999999999876 478999999999999999999998763
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-48 Score=288.74 Aligned_cols=120 Identities=43% Similarity=0.674 Sum_probs=102.8
Q ss_pred CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcccc
Q 038213 1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVR 79 (125)
Q Consensus 1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr 79 (125)
|+++||++|+|++ +++|+.|.++|.+||++|+++|||||+||++|+|||+||++|++|+++++++||||||+|+|+|||
T Consensus 32 L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr 111 (176)
T 3jrn_A 32 LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVR 111 (176)
T ss_dssp HHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHH
T ss_pred HHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhh
Confidence 5689999999987 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeecc
Q 038213 80 NQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLSSFHSL 122 (125)
Q Consensus 80 ~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~ 122 (125)
+|+|+||++|.+|+++ .+.+++++||.||++||+++||++.
T Consensus 112 ~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 112 WQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred hccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999999999987 4689999999999999999999984
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=2e-29 Score=181.62 Aligned_cols=108 Identities=15% Similarity=0.269 Sum_probs=93.9
Q ss_pred CCcCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcccc
Q 038213 1 LSRQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSDVR 79 (125)
Q Consensus 1 L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psdVr 79 (125)
|+++||++|+|+. +.+|+.+.++|.+||++|+++|+|+|+||++|.||++||..+++|...+++.||||||+|+|++|+
T Consensus 43 L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~ 122 (154)
T 3h16_A 43 LRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVA 122 (154)
T ss_dssp HHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGT
T ss_pred HHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHh
Confidence 4678999999998 999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred cccCcHHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 038213 80 NQMGSFGILFSKLEERLKVNTEKLQSWRNALKEA 113 (125)
Q Consensus 80 ~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v 113 (125)
+|+|.|+++|..... ...+..+-+.|.++
T Consensus 123 ~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 123 SFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp TTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred hCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 999999988764322 23345555555443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.83 E-value=3.7e-23 Score=148.48 Aligned_cols=104 Identities=17% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeecCCcc----c
Q 038213 4 QNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRVDPSD----V 78 (125)
Q Consensus 4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v~psd----V 78 (125)
+|+++|+|++ +.+|+.+.++|.+||++||.+|+|||+||++|.||+.||..++++...+...||||||+|++++ +
T Consensus 37 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~L 116 (146)
T 3ub2_A 37 ASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPEL 116 (146)
T ss_dssp ----------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGG
T ss_pred CCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHH
Confidence 6999999998 9999999999999999999999999999999999999999999986433336779999998544 5
Q ss_pred ccccCcHHHHHHHHHHHhccChHHHHHHHHHH
Q 038213 79 RNQMGSFGILFSKLEERLKVNTEKLQSWRNAL 110 (125)
Q Consensus 79 r~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL 110 (125)
+........ .+...|....+.|.+|++||
T Consensus 117 r~~~~id~~---~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 117 RFMYYVDGR---GPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp GGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred hCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence 655432211 12223333357889999886
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.75 E-value=6.7e-20 Score=131.49 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHh-hhhccCceeeeEEee-cCCccc
Q 038213 4 QNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILE-GKKEYAQIVIPVFYR-VDPSDV 78 (125)
Q Consensus 4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~-~~~~~~~~ViPVfy~-v~psdV 78 (125)
.|+++|+|++ +.+|+.+.++|.+||++|+++|+|+|+||++|.||+.||..++. +.+.+++.||||||+ +++..+
T Consensus 33 ~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 33 PPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp SCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred CCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 3999999998 99999999999999999999999999999999999999999986 556677899999995 555444
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.72 E-value=3.5e-19 Score=131.55 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=60.3
Q ss_pred CCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhh-hhccCceeeeEEeec
Q 038213 4 QNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEG-KKEYAQIVIPVFYRV 73 (125)
Q Consensus 4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~-~~~~~~~ViPVfy~v 73 (125)
+|+++|+|++ +.+|+.+.++|.+||++|+.+|+|||+||++|.||+.||..++.+ .+.+++.||||||+-
T Consensus 63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSC
T ss_pred CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 8999999998 999999999999999999999999999999999999999999974 456778999999964
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.72 E-value=1.1e-18 Score=126.58 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=68.1
Q ss_pred cCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCcc-CcHHHHHHHHHHHhhh-hccCceeeeEEeecCCc
Q 038213 3 RQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYA-SSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDPS 76 (125)
Q Consensus 3 ~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~-~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~ps 76 (125)
++|+++|+|++ +.+|+.+.++|.++|++||.+|+|+|+||+ .|.||+.|+..++.+. ..+++.||||||+-.+.
T Consensus 39 ~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 39 HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 68999999998 999999999999999999999999999996 9999999999999875 66788999999976554
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.70 E-value=6.4e-19 Score=127.94 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=65.4
Q ss_pred CCceeEeeCC-CCCCCcchHHHHHHHH-hcchhheecccCccCcHHHHHHHHHHHhhh-hccCceeeeEEeecCC
Q 038213 4 QNIQTFVDDQ-LSRGDEISESLVNAIE-ASAISVILFSEGYASSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDP 75 (125)
Q Consensus 4 ~gi~~f~D~~-~~~G~~i~~~i~~aI~-~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~p 75 (125)
.|+++|+|++ +.+|+.+.++|.++|+ .|+.+|+|+|+||++|.||+.|+..++++. +.+++.||||||+.-+
T Consensus 43 ~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 43 YRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp SCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred CceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 5799999998 9999999999999999 799999999999999999999999999875 4566799999998653
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.41 E-value=7.8e-14 Score=120.77 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.5
Q ss_pred cCCceeEeeCC-CCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhh-hccCceeeeEEeecCCc
Q 038213 3 RQNIQTFVDDQ-LSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGK-KEYAQIVIPVFYRVDPS 76 (125)
Q Consensus 3 ~~gi~~f~D~~-~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~-~~~~~~ViPVfy~v~ps 76 (125)
+.|+++|++++ +.+|+.+.++|.+||++||..|+|+|++|+.|.||..|+..++.+. +++++.||||||+--|.
T Consensus 700 ~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 700 QNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred CCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 57899999998 9999999999999999999999999999999999999999998754 67788999999975543
No 10
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=88.68 E-value=0.57 Score=34.48 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=49.0
Q ss_pred CcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEeec-CCcccccccCcHH
Q 038213 18 DEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYRV-DPSDVRNQMGSFG 86 (125)
Q Consensus 18 ~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~v-~psdVr~q~g~f~ 86 (125)
..|-+.|.+.|..|+..|+++|++...|.|-..|+..+++ +.+..||-|.-+- +.+++..-.|+|.
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 4678899999999999999999999999999999888772 2345677665332 2345555455543
No 11
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=84.26 E-value=0.33 Score=32.60 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=26.0
Q ss_pred HHHhcchhheecccCccCcHHHHHHHHHHHh
Q 038213 27 AIEASAISVILFSEGYASSRWCLDKLVKILE 57 (125)
Q Consensus 27 aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~ 57 (125)
.|+.|.+.||..+++-..|+||..|+....+
T Consensus 35 ~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~ 65 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRRDEILGAVDLARK 65 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred ccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence 4667888888888988999999999976654
No 12
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=48.55 E-value=11 Score=24.88 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 038213 98 VNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~ 117 (125)
.+.+..+.|.+||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 46789999999999998764
No 13
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=47.59 E-value=7 Score=26.01 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhc--c--CceeeeEEeecCCcccc
Q 038213 23 SLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKE--Y--AQIVIPVFYRVDPSDVR 79 (125)
Q Consensus 23 ~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~--~--~~~ViPVfy~v~psdVr 79 (125)
.|-+.+++--+-++--=.+|+-..-.-||+..|+.|++- + -..|+|.-++.....+.
T Consensus 18 aiedrlekfyiplikafssyvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkia 78 (135)
T 3dt5_A 18 AIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIA 78 (135)
T ss_dssp HHHHHHHHTHHHHHHHHHSSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCT
T ss_pred HHHHHHHHHHHHHHHHHHhHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhc
Confidence 344444444444443334565556678999999999863 2 24789987766554443
No 14
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=46.40 E-value=27 Score=22.81 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCceeEeeCCCCCCCcchHHHHHHHHhcchhheecccCccC
Q 038213 4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYAS 44 (125)
Q Consensus 4 ~gi~~f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~ 44 (125)
.||.+|.-. ..+++...+.+.+++..++||+++++.+.
T Consensus 21 aGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 21 AGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp TTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred cCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 578777543 23455556666667779999999999998
No 15
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=40.19 E-value=22 Score=16.89 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHhh
Q 038213 100 TEKLQSWRNALKEAA 114 (125)
Q Consensus 100 ~~~v~~W~~AL~~v~ 114 (125)
-+.|++|++-|.-.+
T Consensus 7 vDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 7 VDSVQRWMEDLKLMT 21 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 478999999987543
No 16
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=39.77 E-value=20 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=15.8
Q ss_pred cChHHHHHHHHHHHHhhcccCee
Q 038213 98 VNTEKLQSWRNALKEAASLSSFH 120 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~G~~ 120 (125)
++.+....|..||..+....+-.
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~~ 114 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGDD 114 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHHHhcccCC
Confidence 45788999999999998766543
No 17
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=38.91 E-value=8.9 Score=23.42 Aligned_cols=35 Identities=9% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCcCCceeEeeCC-CC---CCCcchHHHHHHHHhcchhh
Q 038213 1 LSRQNIQTFVDDQ-LS---RGDEISESLVNAIEASAISV 35 (125)
Q Consensus 1 L~~~gi~~f~D~~-~~---~G~~i~~~i~~aI~~Sri~I 35 (125)
|.++||..|.|.+ +. +-..+++++...+.+.+-.|
T Consensus 14 l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K~el 52 (78)
T 2jug_A 14 AASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGARHEL 52 (78)
T ss_dssp HHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCHHHH
T ss_pred HHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHHHHH
Confidence 3578999999988 52 44467888888887765443
No 18
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=37.83 E-value=32 Score=22.55 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.4
Q ss_pred CCCCcchHHHHHHHHhcchhheecccCcc
Q 038213 15 SRGDEISESLVNAIEASAISVILFSEGYA 43 (125)
Q Consensus 15 ~~G~~i~~~i~~aI~~Sri~IvV~S~ny~ 43 (125)
.||+.+...+.+.|+.++-.|.+.++.+.
T Consensus 10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~~ 38 (155)
T 1byr_A 10 SPEGSARVLVLSAIDSAKTSIRMMAYSFT 38 (155)
T ss_dssp ETTTHHHHHHHHHHHHCSSEEEEEESSBC
T ss_pred CCCCcHHHHHHHHHHHHhhEEEEEEEEeC
Confidence 46677888999999999999999987773
No 19
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.80 E-value=24 Score=22.08 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
++.+....|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999999865
No 20
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=36.81 E-value=23 Score=23.29 Aligned_cols=20 Identities=25% Similarity=0.528 Sum_probs=17.2
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 038213 98 VNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~ 117 (125)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46788999999999998874
No 21
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.56 E-value=27 Score=22.61 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.5
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 468899999999999765
No 22
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.31 E-value=32 Score=22.26 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.9
Q ss_pred cChHHHHHHHHHHHHhhcccCe
Q 038213 98 VNTEKLQSWRNALKEAASLSSF 119 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~G~ 119 (125)
++++....|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 4678899999999999876543
No 23
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=33.45 E-value=30 Score=21.04 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=14.4
Q ss_pred cChHHHHHHHHHHHHhh
Q 038213 98 VNTEKLQSWRNALKEAA 114 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~ 114 (125)
.+.+....|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999876
No 24
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.77 E-value=29 Score=21.46 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.6
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
++.+...+|..||..++.-
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4678899999999988753
No 25
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=29.78 E-value=17 Score=24.44 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=29.3
Q ss_pred eecCCcccccccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhccc
Q 038213 71 YRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 71 y~v~psdVr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~ 117 (125)
|+|+|.+...-...+-.++..+ ..+ +++....|.+++..+++.-
T Consensus 93 ~~V~p~~f~~~~~~Ll~~l~~~-~~~--t~e~~~AW~~~~~~v~~~l 136 (147)
T 2nrl_A 93 HKIPINNFKLISEVLVKVMQEK-AGL--DAGGQTALRNVMGIIIADL 136 (147)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHH-SCC--CHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-ccC--CHHHHHHHHHHHHHHHHHH
Confidence 4678877766444444445444 222 5788899999999988743
No 26
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=28.98 E-value=26 Score=23.17 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=26.4
Q ss_pred cCCceeEeeCCCCCCCcchHHHHHHHHhcchhheecccCccC
Q 038213 3 RQNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYAS 44 (125)
Q Consensus 3 ~~gi~~f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~ 44 (125)
-.||.+|.-.+ -+++...+.+.+++ .++||+++++.+.
T Consensus 19 LaGie~~~v~~---~ee~~~~~~~l~~~-digIIlIte~ia~ 56 (115)
T 3aon_B 19 LFGFDVQHGTT---KTEIRKTIDEMAKN-EYGVIYITEQCAN 56 (115)
T ss_dssp GGTCEEECCCS---HHHHHHHHHHHHHT-TEEEEEEEHHHHT
T ss_pred HcCCeEEEeCC---HHHHHHHHHHHHhc-CceEEEEeHHHHH
Confidence 35787775432 24555555666666 9999999999887
No 27
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=28.78 E-value=34 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.4
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
++.+....|..||..++..
T Consensus 102 ~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 102 DKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4578899999999998754
No 28
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=28.65 E-value=41 Score=21.35 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=16.5
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 038213 98 VNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~ 117 (125)
++++.+..|..||..+++..
T Consensus 102 ~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 102 HDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 46788999999999988653
No 29
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=28.39 E-value=40 Score=20.68 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.0
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
++++....|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 467889999999998864
No 30
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=28.28 E-value=41 Score=21.24 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.2
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
++++..+.|..||..++.
T Consensus 84 ~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 84 ESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 467889999999998765
No 31
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.15 E-value=41 Score=21.20 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
.+.+....|..||..+++-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999998764
No 32
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=28.13 E-value=19 Score=23.54 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=27.7
Q ss_pred eecCCcccccccCcHHHHHHHHHHHhcc--ChHHHHHHHHHHHHhhcc
Q 038213 71 YRVDPSDVRNQMGSFGILFSKLEERLKV--NTEKLQSWRNALKEAASL 116 (125)
Q Consensus 71 y~v~psdVr~q~g~f~~~f~~~~~~~~~--~~~~v~~W~~AL~~v~~~ 116 (125)
|+|+|.+... +++++...-...+. +++....|.+++..+++.
T Consensus 84 ~gV~p~~f~~----~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~ 127 (134)
T 1tu9_A 84 LDIRPELYDL----WLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAV 127 (134)
T ss_dssp TCCCTTHHHH----HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHH----HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3567777654 35555544433432 578889999999998864
No 33
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=27.84 E-value=22 Score=23.05 Aligned_cols=39 Identities=13% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCceeEeeCCCCCCCcchHHHHHHHHhcchhheecccCccC
Q 038213 4 QNIQTFVDDQLSRGDEISESLVNAIEASAISVILFSEGYAS 44 (125)
Q Consensus 4 ~gi~~f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~ 44 (125)
.||..+.+. ..-+++...+.+.+++..++||+++++.+.
T Consensus 27 aGi~~~~~~--~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 27 AGISDIYEV--TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp TTCCCEEEC--CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred cCCCcccCC--CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 466655511 112445556666667779999999999887
No 34
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=27.77 E-value=10 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=12.5
Q ss_pred HHHHHHHhcchhheecccCccC
Q 038213 23 SLVNAIEASAISVILFSEGYAS 44 (125)
Q Consensus 23 ~i~~aI~~Sri~IvV~S~ny~~ 44 (125)
..+.++..+..+++|||..|-.
T Consensus 43 ~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 43 AELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp C--------CEEEEECCSSCCC
T ss_pred HHhCCccCCceEEEEecCCccc
Confidence 5567799999999999999965
No 35
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=27.66 E-value=43 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHHhh
Q 038213 98 VNTEKLQSWRNALKEAA 114 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~ 114 (125)
++++....|..||..+.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999875
No 36
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.65 E-value=42 Score=22.89 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.4
Q ss_pred cChHHHHHHHHHHHHhhcccC
Q 038213 98 VNTEKLQSWRNALKEAASLSS 118 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~G 118 (125)
++.+..+.|..||..|+.++.
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~~ 116 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELSV 116 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcccC
Confidence 467889999999999988653
No 37
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=26.65 E-value=44 Score=20.99 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.8
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
.+.+....|..||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999998764
No 38
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.55 E-value=40 Score=21.28 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.2
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
++++.++.|..||..++.
T Consensus 100 ~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 100 KDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 467889999999998875
No 39
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=26.30 E-value=50 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
.+.+....|..||..+++.
T Consensus 103 ~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 4678899999999998864
No 40
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.41 E-value=48 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=15.6
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
.+.+....|..||..+..-
T Consensus 95 ~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 4578899999999998753
No 41
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.40 E-value=47 Score=20.39 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.2
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 038213 98 VNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~ 117 (125)
.+.+....|..||..++...
T Consensus 92 ~s~~e~~~Wi~al~~~~~~~ 111 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARVQ 111 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 45788999999999987643
No 42
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=25.13 E-value=47 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
++++....|.+||.++..-
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~ 122 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKN 122 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999764
No 43
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=24.87 E-value=47 Score=19.93 Aligned_cols=18 Identities=6% Similarity=0.259 Sum_probs=14.6
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
.+.+....|..||..+..
T Consensus 88 ~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 88 TSPAEARDWVDQISFLLK 105 (108)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 357889999999998754
No 44
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=24.71 E-value=52 Score=22.17 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCCcchHHHHHHHHhcchhheecccCccCc-HHH---HHHHHHHHhhhhccCceeeeEEeecCCc
Q 038213 16 RGDEISESLVNAIEASAISVILFSEGYASS-RWC---LDKLVKILEGKKEYAQIVIPVFYRVDPS 76 (125)
Q Consensus 16 ~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S-~wC---l~EL~~i~~~~~~~~~~ViPVfy~v~ps 76 (125)
-|+.++-+-+ +. ++.+|-|- |..- .|| +.+|..+.+..+..+..|..|+.-|+|.
T Consensus 21 ~G~~v~l~d~---~G-k~vll~F~--~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGTKDL---KG-KVWVADFM--FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEHHHH---TT-SCEEEEEE--CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeHHHh---CC-CEEEEEEE--CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 5777764333 22 55555553 3222 367 5555555555555566688888889885
No 45
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.68 E-value=54 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.5
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 038213 98 VNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~ 117 (125)
++++..+.|.+||..+....
T Consensus 107 ~s~~e~~~Wi~ai~~a~~~~ 126 (130)
T 1v88_A 107 TSESDGRCWMDALELALKSG 126 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46788999999999987654
No 46
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.18 E-value=48 Score=20.28 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.6
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
++.+....|..||..+...
T Consensus 86 ~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 86 SDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4578899999999998764
No 47
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=24.05 E-value=7.4 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=18.4
Q ss_pred HhcchhheecccCccCcHHHHHHHHHHHhhh
Q 038213 29 EASAISVILFSEGYASSRWCLDKLVKILEGK 59 (125)
Q Consensus 29 ~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~ 59 (125)
=++.+++||||++---..||-..+..++++.
T Consensus 38 CdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 38 CDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp TTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred cCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 3688899999987433333333344555543
No 48
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.03 E-value=52 Score=20.71 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=14.4
Q ss_pred cChHHHHHHHHHHHHhh
Q 038213 98 VNTEKLQSWRNALKEAA 114 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~ 114 (125)
++.+....|..||..+.
T Consensus 87 ~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 87 ATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46788999999999875
No 49
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.95 E-value=48 Score=20.83 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 038213 98 VNTEKLQSWRNALKEAASLS 117 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~~ 117 (125)
.+.+....|..||..+....
T Consensus 87 ~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 87 TDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 46788999999999877543
No 50
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=23.82 E-value=26 Score=23.40 Aligned_cols=41 Identities=5% Similarity=0.155 Sum_probs=27.1
Q ss_pred eecCCcccccccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhc
Q 038213 71 YRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 71 y~v~psdVr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~ 115 (125)
|+|+|.+... +++++...-....-+++...-|.+++..|++
T Consensus 104 ~~V~p~~f~~----~~~~ll~~l~~~~~t~e~~~AW~k~~~~va~ 144 (146)
T 3g46_A 104 RKISAAEFGK----INGPIKKVLASKNFGDKYANAWAKLVAVVQA 144 (146)
T ss_dssp TTCCHHHHGG----GHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4677777655 3455444433322367889999999998875
No 51
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.21 E-value=28 Score=26.03 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=32.8
Q ss_pred EeeCCCCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccC
Q 038213 9 FVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYA 63 (125)
Q Consensus 9 f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~ 63 (125)
|+|-++..++.+...+.+..+....-| |.|-+..+.+|-.+||..++..+...+
T Consensus 116 ~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 116 LIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred hhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 555554445555555555555555444 556555566777788888887766555
No 52
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.08 E-value=64 Score=23.76 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=40.0
Q ss_pred CCcCCcee-EeeCCCCCCCcchHHHHHHHHhcchhheecccCccCcHHHHHHHHHHHhhhhccCceeeeEEee
Q 038213 1 LSRQNIQT-FVDDQLSRGDEISESLVNAIEASAISVILFSEGYASSRWCLDKLVKILEGKKEYAQIVIPVFYR 72 (125)
Q Consensus 1 L~~~gi~~-f~D~~~~~G~~i~~~i~~aI~~Sri~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~ViPVfy~ 72 (125)
|+.+|+.| ++.... -.+++.+++++.+.-+|.+|-.-..+ +..+...++..++.+.. +||+..
T Consensus 147 L~~~G~~Vi~LG~~v-----p~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i~~l~~~~~~-~~v~vG 210 (258)
T 2i2x_B 147 LRANGYNVVDLGRDV-----PAEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVNDMLLENGIK-IPFACG 210 (258)
T ss_dssp HHHTTCEEEEEEEEC-----CSHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHHHHHHTTTCC-CCEEEE
T ss_pred HHHCCCEEEECCCCC-----CHHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHHHHHHhcCCC-CcEEEE
Confidence 35678876 444322 13478889999999999998776554 34455555444444444 888875
No 53
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=23.00 E-value=52 Score=20.48 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.0
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
++.+....|..||..+..
T Consensus 103 ~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 103 PSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 457889999999998865
No 54
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=22.67 E-value=49 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=13.0
Q ss_pred cChHHHHHHHHHHHHh
Q 038213 98 VNTEKLQSWRNALKEA 113 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v 113 (125)
++.+....|..||..+
T Consensus 91 ~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 91 KDDEEMNTWIQAISSA 106 (106)
T ss_dssp SSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4678899999999863
No 55
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=21.64 E-value=57 Score=20.48 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=14.8
Q ss_pred cChHHHHHHHHHHHHhhc
Q 038213 98 VNTEKLQSWRNALKEAAS 115 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~ 115 (125)
.+.+....|..||..+..
T Consensus 93 ~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 93 ETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 457889999999998764
No 56
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=21.62 E-value=48 Score=22.07 Aligned_cols=45 Identities=2% Similarity=0.025 Sum_probs=27.4
Q ss_pred eecCCcccccccCcHHHHHHHHHHHhccChHHHHHHHHHHHHhhcc
Q 038213 71 YRVDPSDVRNQMGSFGILFSKLEERLKVNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 71 y~v~psdVr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~ 116 (125)
|+|+|.+...-...+-.++.++-.. .-+++....|.+++..+++.
T Consensus 105 ~gV~p~~f~~~~~~ll~~l~~~lg~-~~t~e~~~AW~k~~~~va~~ 149 (150)
T 1sct_A 105 RKISGDAFGAIVEPMKETLKARMGN-YYSDDVAGAWAALVGVVQAA 149 (150)
T ss_dssp TTCCHHHHGGGHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHh
Confidence 4677777665333333333332221 12578899999999998864
No 57
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=21.32 E-value=51 Score=21.25 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=27.6
Q ss_pred eecCCcccccccCcHHHHHHHHHHH-hc--cChHHHHHHHHHHHHhhcc
Q 038213 71 YRVDPSDVRNQMGSFGILFSKLEER-LK--VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 71 y~v~psdVr~q~g~f~~~f~~~~~~-~~--~~~~~v~~W~~AL~~v~~~ 116 (125)
|+|+|.+... +++++...-.. .+ =+++....|.+++..+++.
T Consensus 84 ~gV~p~~f~~----~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~ 128 (131)
T 3ubc_A 84 YGVVDSHYPL----VGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQV 128 (131)
T ss_dssp TTCCTTHHHH----HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH----HHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHH
Confidence 4678877655 45555444322 22 2578899999999998863
No 58
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=20.69 E-value=65 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.594 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
++.+....|..||..++..
T Consensus 94 ~s~~e~~~Wi~ai~~~~~~ 112 (168)
T 2j59_M 94 EDRDDMLAWIKTIQESSNL 112 (168)
T ss_dssp SSHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999998764
No 59
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.67 E-value=68 Score=19.75 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.5
Q ss_pred cChHHHHHHHHHHHHhh
Q 038213 98 VNTEKLQSWRNALKEAA 114 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~ 114 (125)
++.+....|..||..+.
T Consensus 82 ~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 82 EKEEERNDWISILLNAL 98 (115)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45788999999999887
No 60
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=20.42 E-value=55 Score=22.74 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=36.5
Q ss_pred CcCCceeEeeCC--CCCCCcchHHHHHHHHhcchhheeccc---CccCcHHHHHHHHHHHh
Q 038213 2 SRQNIQTFVDDQ--LSRGDEISESLVNAIEASAISVILFSE---GYASSRWCLDKLVKILE 57 (125)
Q Consensus 2 ~~~gi~~f~D~~--~~~G~~i~~~i~~aI~~Sri~IvV~S~---ny~~S~wCl~EL~~i~~ 57 (125)
+..|..+|.-.+ ....+.|...-.++|++|.+.|+++.| .+..+. ...|+-.+..
T Consensus 37 ~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G-TafEiGyA~A 96 (161)
T 2f62_A 37 KKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG-TAFEVGCAAA 96 (161)
T ss_dssp HTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH-HHHHHHHHHH
T ss_pred HHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc-HHHHHHHHHH
Confidence 456777776543 223345555668899999999999884 555544 5567765543
No 61
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=20.39 E-value=33 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=27.8
Q ss_pred eecCCcccccccCcHHHHHHHHHHH-hc--cChHHHHHHHHHHHHhhcc
Q 038213 71 YRVDPSDVRNQMGSFGILFSKLEER-LK--VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 71 y~v~psdVr~q~g~f~~~f~~~~~~-~~--~~~~~v~~W~~AL~~v~~~ 116 (125)
|+|+|.+... +++++...-.. .+ -+++....|..++..+++.
T Consensus 91 ~gV~p~~f~~----~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~ 135 (141)
T 2w72_C 91 LRVDPVNFKL----LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTV 135 (141)
T ss_dssp TCCCTHHHHH----HHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH----HHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHH
Confidence 4677877665 45555544332 22 2578888999999998874
No 62
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.34 E-value=70 Score=19.56 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=15.4
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
.+.+....|..||..+...
T Consensus 84 ~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 84 AFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999988754
No 63
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.23 E-value=53 Score=20.15 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.4
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 038213 98 VNTEKLQSWRNALKEAASL 116 (125)
Q Consensus 98 ~~~~~v~~W~~AL~~v~~~ 116 (125)
.+.+....|..||..+..-
T Consensus 94 ~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 94 QDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp SSHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 4578899999999987654
Done!