BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038217
(715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALR 348
P+ F CPI L+LM+DPVI+STGQTY+R SI +W++ GH+TCPK+ + L+H L PN L+
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 349 NLIVQWCTAHGI 360
+LI WC ++GI
Sbjct: 66 SLIALWCESNGI 77
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP C I +LMR+P I +G TYDR+ I ++ P T L D+L+PN A+
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162
Query: 348 RNLIVQWCTAHG 359
+ +I + +G
Sbjct: 163 KEVIDAFIQENG 174
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP C I +LMR+P I +G TYDR+ I ++ P T L ++L+PN A+
Sbjct: 2 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 348 RNLIVQWCTAHG 359
+ +I + + +G
Sbjct: 62 KEVIDAFISENG 73
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRA 346
IP C I +LMR+P I +G TYDR+ I ++ P T L ++L+PN A
Sbjct: 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 263
Query: 347 LRNLIVQWCTAHG 359
++ +I + + +G
Sbjct: 264 MKEVIDAFISENG 276
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP C I +LM +P I +G TYDR+ I ++ P T L D+L+PN A+
Sbjct: 10 IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69
Query: 348 RNLI 351
+ +I
Sbjct: 70 KEVI 73
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 275 GLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQ-TYDRRSIARWMEEGHRTCPKTG 333
GL QE ET+ +F PIM LM DPV++ + + T DR +IAR + +T P
Sbjct: 7 GLQQQE-EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNR 64
Query: 334 QMLVHDRLVPNRALRNLIVQW 354
L D++ PN L+ I +W
Sbjct: 65 SPLTMDQIRPNTELKEKIQRW 85
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
L+Q L++ + + A + +A G E + AGA+P L LLS+ N + ++
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N++ + + + + G L ++V++L + + A L ++++ +K+
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVK 177
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E+GA+E L L + +K+A AL L +H
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
+ QQL + + + A R+ + G E + AGA+P L LLS+ N + ++
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N++ + + + + G L ++V++L + + A L ++++ + +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLST 546
++GA+ AL LL + ++A+ AL N+++
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIAS 167
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
L+Q L++ + + A + +A G E + AGA+P L LLS+ N + ++
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N++ + + + + G L ++V++L + + A L ++++ +K+
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVK 177
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E+GA+E L L + +K+A AL L +H
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
++QQL + + A R++ +A G E + AGA+P L LLS+ N + ++
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N++ + + + + G L ++V++L + + A L ++++ + +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLST 546
++GA+ AL LL + ++A+ AL N+++
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIAS 167
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
++QQL + + A R++ +A G E + AGA+P L LLS+ N + ++
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N++ + + + + G L ++V++L + + A L ++++ + +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLST 546
++GA+ AL LL + ++A+ AL N+++
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIAS 167
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
L+Q L++ + + A + +A G E + AGA+P L LLS+ N + ++
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N++ + + + + G L ++V++L + + A L ++++ +K+
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVK 177
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E+GA AL L + +K+A AL + +H
Sbjct: 178 EAGAEPALEQLQSSPNEKIQKEAQEALEKIQSH 210
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 417 LAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476
+A G E + AGA+P L LLS+ N + ++ A+ N++ + + + + G L
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182
Query: 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD 536
++V++L + + A L ++++ +K+ E+GA+E L L + +K+
Sbjct: 183 PALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 537 AVTALFNLSTH 547
A AL L +H
Sbjct: 242 AQEALEKLQSH 252
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
+ QQL + + + A R+ + G E + AGA+P L LLS+ N + ++
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV----HEYKK 510
A+ N++ + + + + G L ++V++ L++ + L++LS + +E +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQL----LSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI 555
+ D +GA+ AL LL + ++A+ AL N+++ + ++ +
Sbjct: 133 AVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALR 348
P +F P+M LM DPV + +G DR I R + T P QML L P L+
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTESMLEPVPELK 70
Query: 349 NLIVQW 354
I W
Sbjct: 71 EQIQAW 76
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
+P +F P+M +M+DPVI+ + RS + T P L + + PN L
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEEL 947
Query: 348 RNLIV 352
R I+
Sbjct: 948 RQKIL 952
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCP 330
C + L+ +++PVII G + + I RW E+ R P
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
+P +F P+M +M+DPVI+ + RS + T P L + + PN L
Sbjct: 902 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEEL 961
Query: 348 RNLIV 352
R I+
Sbjct: 962 RQKIL 966
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|B Chain B, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
Length = 351
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 297 MLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354
++D + V + + Y R I R +E +T P ++ H + N ++Q
Sbjct: 164 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 223
Query: 355 CTAHGIPYDPPETTD--------VSAESFASALPSRAAVEANRATAELLIQQLA--NGSP 404
HG P D + +S FAS + + A+RA LLI ++ N P
Sbjct: 224 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 283
Query: 405 RA 406
+
Sbjct: 284 HS 285
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With P38alpha Nrea
pdb|3Q0R|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With P38alpha Nreb
pdb|3Q0S|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With Erk2 Nre
Length = 351
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 297 MLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354
++D + V + + Y R I R +E +T P ++ H + N ++Q
Sbjct: 164 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 223
Query: 355 CTAHGIPYDPPETTD--------VSAESFASALPSRAAVEANRATAELLIQQLA--NGSP 404
HG P D + +S FAS + + A+RA LLI ++ N P
Sbjct: 224 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 283
Query: 405 RA 406
+
Sbjct: 284 HS 285
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 285 FLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344
+ P +F P+M LM DPV + +G DR I R + T P Q L L P
Sbjct: 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS-PTDPFNRQTLTESMLEPV 81
Query: 345 RALRNLIVQWC 355
L+ I W
Sbjct: 82 PELKEQIQAWM 92
>pdb|2WVK|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVK|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVL|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
pdb|2WVL|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
Length = 391
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 132 QEISTLLD----VFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDE 187
QE+ +LL+ VFP +D E+ ++ +++ Q + RN LH +K DE +R L + L
Sbjct: 273 QELVSLLELYGGVFPLEDEEV---LQHGVEIFQIETRNPHLHENKGDEHIRDMLLACLAT 329
Query: 188 FEHGRV 193
H ++
Sbjct: 330 VYHSKL 335
>pdb|2WVM|A Chain A, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
pdb|2WVM|B Chain B, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
Length = 391
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 132 QEISTLLD----VFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDE 187
QE+ +LL+ VFP +D E+ ++ +++ Q + RN LH +K DE +R L + L
Sbjct: 273 QELVSLLELYGGVFPLEDEEV---LQHGVEIFQIETRNPALHENKGDEHIRDMLLACLAT 329
Query: 188 FEHGRV 193
H ++
Sbjct: 330 VYHSKL 335
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 288 IPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSI-ARWMEEGHRTCPKTGQMLVH-DRLVPN 344
IP + C I D+M D V+I G +Y I +E TCP Q V D L+ N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69
Query: 345 RALRNLI 351
+ LR +
Sbjct: 70 KFLRQAV 76
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 399 LANGSPRAKTVAAREI---RLLAKTGK---------ENRAFIAKAGAIPHLRNLLSTHNP 446
LANG P+A R +LL T + N+ I +AG + L L++++P
Sbjct: 184 LANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKHLTSNSP 243
Query: 447 VAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE---ARENAAATLFSLS 503
+N + + NL S + ++ L S++K+L L+ + A TL +L+
Sbjct: 244 RLVQNCLWTLRNL-------SDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLT 296
Query: 504 AVHEYKKKIADESGAVEALA-TLLRLGTPRGKKDAVT 539
+ K + ++ VEAL +LR G KD +T
Sbjct: 297 CNNSKNKTLVTQNSGVEALIHAILR----AGDKDDIT 329
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 285 FLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIA-----RWMEEGHRTCPKTGQMLVHD 339
+++ ++ CPI L+L+ P+ + G ++ + + +++G +CP +
Sbjct: 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72
Query: 340 RLVPNRALRNLI 351
+ PNR + N++
Sbjct: 73 NIRPNRHVANIV 84
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN----RALRN 349
CPI L +R+ V G + + I + + + CP ++L+ ++L P+ R + +
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80
Query: 350 LIVQWCTAHG 359
L+V+ C G
Sbjct: 81 LMVK-CPNEG 89
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344
CPI L +R+ V G + + I + + + CP ++L+ ++L P+
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN----RALRN 349
CPI L +R+ V G + + I + + + CP ++L+ ++L P+ R + +
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80
Query: 350 LIVQWCTAHG 359
L+V+ C G
Sbjct: 81 LMVK-CPNEG 89
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP-NRALRNLI 351
CPI L +R+ V G + + I + + + CP ++L+ ++L P N A R ++
Sbjct: 28 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 86
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
L++ L + P I L E + K G +P L LL ++
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALR 247
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
A+ N+ +++++ + G L ++ L T ++ A T+ +++A + + +
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGAL-AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 306
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLST 546
G V L ++L + +K+AV A+ N ++
Sbjct: 307 NHGLVPFLVSVLSKADFKTQKEAVWAVTNYTS 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,741,641
Number of Sequences: 62578
Number of extensions: 602726
Number of successful extensions: 1538
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 52
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)