Query 038217
Match_columns 715
No_of_seqs 456 out of 2834
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 7.2E-27 1.6E-31 286.4 32.6 279 388-671 11-312 (2102)
2 PLN03200 cellulose synthase-in 99.9 1.3E-25 2.8E-30 275.5 32.3 281 388-673 444-766 (2102)
3 KOG4224 Armadillo repeat prote 99.9 1E-24 2.2E-29 221.5 20.8 274 390-671 167-446 (550)
4 KOG4224 Armadillo repeat prote 99.9 3E-24 6.5E-29 218.0 20.0 273 391-670 127-404 (550)
5 KOG0166 Karyopherin (importin) 99.9 3.7E-22 8E-27 216.9 23.5 277 390-670 109-392 (514)
6 KOG0166 Karyopherin (importin) 99.9 1.3E-20 2.9E-25 204.8 25.2 283 390-675 152-440 (514)
7 COG5064 SRP1 Karyopherin (impo 99.8 2.6E-19 5.7E-24 180.9 14.9 272 390-668 114-395 (526)
8 COG5064 SRP1 Karyopherin (impo 99.8 2.1E-18 4.5E-23 174.4 19.3 279 390-671 157-443 (526)
9 PF05804 KAP: Kinesin-associat 99.8 2.2E-17 4.7E-22 189.2 29.4 278 388-674 288-652 (708)
10 KOG2122 Beta-catenin-binding p 99.8 5.3E-18 1.1E-22 195.4 18.8 260 407-671 315-602 (2195)
11 PF04564 U-box: U-box domain; 99.7 1.1E-18 2.4E-23 144.1 4.8 72 288-359 1-72 (73)
12 PF05804 KAP: Kinesin-associat 99.7 6.6E-16 1.4E-20 177.1 26.0 219 445-673 262-481 (708)
13 KOG1048 Neural adherens juncti 99.7 1.6E-16 3.5E-21 178.0 19.6 290 390-682 233-606 (717)
14 KOG4199 Uncharacterized conser 99.7 2.6E-14 5.6E-19 145.0 25.7 283 393-681 148-454 (461)
15 KOG1048 Neural adherens juncti 99.6 5.7E-14 1.2E-18 157.7 23.1 281 389-675 274-688 (717)
16 PF04826 Arm_2: Armadillo-like 99.5 6.6E-13 1.4E-17 136.1 22.4 234 390-636 12-252 (254)
17 smart00504 Ubox Modified RING 99.5 7.9E-15 1.7E-19 117.9 5.0 63 291-354 1-63 (63)
18 KOG4199 Uncharacterized conser 99.4 7.1E-11 1.5E-15 120.3 26.0 263 400-671 117-403 (461)
19 PF04826 Arm_2: Armadillo-like 99.4 1.4E-11 3E-16 126.4 20.9 194 428-629 8-207 (254)
20 PF10508 Proteasom_PSMB: Prote 99.4 2.6E-10 5.7E-15 129.4 28.9 275 390-669 77-364 (503)
21 KOG1222 Kinesin associated pro 99.3 8.2E-10 1.8E-14 117.0 22.2 275 389-672 303-664 (791)
22 KOG4642 Chaperone-dependent E3 99.2 3.6E-11 7.7E-16 117.6 10.9 239 72-361 33-281 (284)
23 KOG4500 Rho/Rac GTPase guanine 99.2 5.4E-10 1.2E-14 117.2 20.1 279 390-674 87-434 (604)
24 KOG2122 Beta-catenin-binding p 99.2 7E-11 1.5E-15 137.8 14.0 225 405-631 366-605 (2195)
25 cd00020 ARM Armadillo/beta-cat 99.1 1.3E-09 2.9E-14 98.5 13.4 117 427-546 2-120 (120)
26 PF15227 zf-C3HC4_4: zinc fing 99.1 3.2E-11 6.9E-16 87.9 2.1 39 294-332 1-42 (42)
27 PF10508 Proteasom_PSMB: Prote 99.1 6.5E-08 1.4E-12 110.0 27.8 273 394-675 42-323 (503)
28 PLN03208 E3 ubiquitin-protein 99.0 1.2E-10 2.5E-15 111.9 4.0 61 286-346 13-88 (193)
29 TIGR00599 rad18 DNA repair pro 99.0 2.8E-10 6.2E-15 122.2 6.2 72 286-358 21-92 (397)
30 cd00020 ARM Armadillo/beta-cat 99.0 5.2E-09 1.1E-13 94.6 13.5 114 389-504 6-120 (120)
31 KOG1222 Kinesin associated pro 99.0 5.6E-09 1.2E-13 110.8 15.2 180 446-629 277-457 (791)
32 PF03224 V-ATPase_H_N: V-ATPas 98.9 1E-07 2.2E-12 102.0 18.2 217 395-616 63-303 (312)
33 KOG0287 Postreplication repair 98.8 1.5E-09 3.3E-14 109.9 2.9 70 287-357 19-88 (442)
34 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.5E-07 3.3E-12 100.7 18.1 245 417-665 37-308 (312)
35 PRK09687 putative lyase; Provi 98.8 8.1E-07 1.8E-11 93.2 21.2 228 388-667 21-278 (280)
36 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.6E-09 7.8E-14 76.1 2.4 38 294-332 1-39 (39)
37 PF14835 zf-RING_6: zf-RING of 98.7 2.6E-09 5.6E-14 82.9 0.9 60 289-351 5-65 (65)
38 KOG0946 ER-Golgi vesicle-tethe 98.7 7.3E-06 1.6E-10 92.4 27.2 258 391-654 23-327 (970)
39 KOG4500 Rho/Rac GTPase guanine 98.7 1.1E-06 2.5E-11 92.7 19.5 274 392-669 225-517 (604)
40 cd00256 VATPase_H VATPase_H, r 98.7 5.6E-06 1.2E-10 90.7 24.0 272 394-669 105-423 (429)
41 KOG0168 Putative ubiquitin fus 98.6 2.5E-06 5.5E-11 96.6 21.4 255 391-654 168-438 (1051)
42 KOG2160 Armadillo/beta-catenin 98.6 6.4E-06 1.4E-10 86.4 22.6 183 400-585 93-282 (342)
43 KOG0823 Predicted E3 ubiquitin 98.6 1.4E-08 3.1E-13 99.2 2.1 60 288-347 44-105 (230)
44 COG5432 RAD18 RING-finger-cont 98.6 2.4E-08 5.2E-13 99.3 3.2 68 288-356 22-89 (391)
45 PF00097 zf-C3HC4: Zinc finger 98.6 2.9E-08 6.4E-13 72.2 2.8 39 294-332 1-41 (41)
46 PF13445 zf-RING_UBOX: RING-ty 98.6 2.1E-08 4.6E-13 73.0 1.8 36 294-330 1-43 (43)
47 KOG0317 Predicted E3 ubiquitin 98.6 4.5E-08 9.9E-13 98.4 3.9 55 286-341 234-288 (293)
48 PHA02929 N1R/p28-like protein; 98.5 7.2E-08 1.6E-12 97.0 4.1 48 289-337 172-227 (238)
49 PF13920 zf-C3HC4_3: Zinc fing 98.5 6.2E-08 1.4E-12 73.8 2.6 47 290-337 1-48 (50)
50 cd00256 VATPase_H VATPase_H, r 98.5 1.6E-05 3.4E-10 87.3 21.5 232 391-627 144-425 (429)
51 KOG4646 Uncharacterized conser 98.5 1.6E-06 3.5E-11 78.0 10.9 133 389-525 15-149 (173)
52 PF13639 zf-RING_2: Ring finge 98.4 8.9E-08 1.9E-12 70.8 1.8 40 293-333 2-44 (44)
53 KOG0320 Predicted E3 ubiquitin 98.4 1.5E-07 3.3E-12 88.0 3.7 57 286-343 126-184 (187)
54 KOG0978 E3 ubiquitin ligase in 98.4 7.1E-06 1.5E-10 93.3 17.3 56 288-343 640-695 (698)
55 PRK09687 putative lyase; Provi 98.4 1.3E-05 2.9E-10 84.1 17.5 172 422-626 9-187 (280)
56 cd00162 RING RING-finger (Real 98.4 3.4E-07 7.4E-12 67.5 3.8 43 293-335 1-44 (45)
57 KOG4646 Uncharacterized conser 98.3 5.5E-06 1.2E-10 74.6 11.1 151 472-624 14-167 (173)
58 KOG2177 Predicted E3 ubiquitin 98.3 3.5E-07 7.7E-12 97.5 4.3 71 286-359 8-78 (386)
59 PF11789 zf-Nse: Zinc-finger o 98.3 1.5E-07 3.3E-12 73.1 1.0 43 291-333 11-55 (57)
60 PRK13800 putative oxidoreducta 98.3 8.1E-05 1.8E-09 90.8 24.7 228 388-669 619-865 (897)
61 KOG2160 Armadillo/beta-catenin 98.3 3.1E-05 6.6E-10 81.4 18.0 183 442-628 93-283 (342)
62 smart00184 RING Ring finger. E 98.3 8.2E-07 1.8E-11 63.1 4.0 39 294-332 1-39 (39)
63 KOG3678 SARM protein (with ste 98.3 3E-05 6.6E-10 82.7 16.9 262 389-671 179-452 (832)
64 KOG0311 Predicted E3 ubiquitin 98.3 2.4E-07 5.1E-12 95.4 1.2 73 285-357 37-111 (381)
65 PF01602 Adaptin_N: Adaptin N 98.3 6.8E-05 1.5E-09 86.2 21.5 249 391-670 115-368 (526)
66 PHA02926 zinc finger-like prot 98.2 8.6E-07 1.9E-11 86.1 4.1 51 287-337 166-230 (242)
67 PRK13800 putative oxidoreducta 98.2 0.00018 3.8E-09 87.9 24.8 227 389-667 651-895 (897)
68 KOG2660 Locus-specific chromos 98.2 9.2E-07 2E-11 90.8 3.7 66 286-352 10-80 (331)
69 PF01602 Adaptin_N: Adaptin N 98.2 0.00023 5E-09 81.8 23.6 252 391-673 153-409 (526)
70 KOG0168 Putative ubiquitin fus 98.2 6.8E-05 1.5E-09 85.4 17.7 213 389-609 210-437 (1051)
71 KOG2973 Uncharacterized conser 98.1 0.00064 1.4E-08 69.8 22.7 269 392-672 5-316 (353)
72 TIGR00570 cdk7 CDK-activating 98.1 2.6E-06 5.7E-11 88.2 5.5 62 290-351 2-72 (309)
73 KOG2164 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 93.3 2.9 70 291-360 186-263 (513)
74 PF14634 zf-RING_5: zinc-RING 98.0 3.9E-06 8.4E-11 62.0 3.4 41 293-334 1-44 (44)
75 COG5574 PEX10 RING-finger-cont 98.0 3.2E-06 6.8E-11 84.3 3.3 54 288-341 212-266 (271)
76 KOG2759 Vacuolar H+-ATPase V1 98.0 0.00028 6.1E-09 75.2 17.7 232 392-628 158-439 (442)
77 COG5222 Uncharacterized conser 98.0 9.5E-06 2.1E-10 81.4 6.2 71 292-362 275-347 (427)
78 PF00514 Arm: Armadillo/beta-c 98.0 1E-05 2.3E-10 58.7 4.4 40 421-460 1-40 (41)
79 PF05536 Neurochondrin: Neuroc 98.0 0.00061 1.3E-08 78.1 20.7 232 391-627 6-261 (543)
80 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0046 9.9E-08 67.5 26.4 268 394-669 29-362 (371)
81 KOG0946 ER-Golgi vesicle-tethe 97.9 0.0012 2.7E-08 75.0 21.9 238 390-629 61-348 (970)
82 PF05536 Neurochondrin: Neuroc 97.9 0.00021 4.6E-09 81.8 16.5 152 473-630 4-171 (543)
83 KOG1789 Endocytosis protein RM 97.9 0.00094 2E-08 77.5 21.0 242 406-654 1741-2142(2235)
84 KOG2734 Uncharacterized conser 97.9 0.0016 3.4E-08 69.9 21.1 229 409-642 103-362 (536)
85 KOG1293 Proteins containing ar 97.8 0.00045 9.8E-09 77.3 15.8 271 397-672 239-534 (678)
86 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.4E-05 3.1E-10 65.9 2.9 40 293-333 21-73 (73)
87 COG5113 UFD2 Ubiquitin fusion 97.8 4.2E-05 9E-10 84.2 6.6 77 284-361 847-924 (929)
88 KOG2759 Vacuolar H+-ATPase V1 97.7 0.0058 1.3E-07 65.5 21.7 268 393-669 117-436 (442)
89 KOG2042 Ubiquitin fusion degra 97.7 3.9E-05 8.6E-10 89.8 5.4 76 284-360 863-939 (943)
90 KOG2171 Karyopherin (importin) 97.6 0.0028 6.1E-08 75.4 19.8 241 390-633 348-600 (1075)
91 KOG0297 TNF receptor-associate 97.6 3.1E-05 6.7E-10 85.0 3.5 68 286-354 16-85 (391)
92 KOG1293 Proteins containing ar 97.6 0.0041 8.8E-08 69.9 19.5 154 401-556 388-544 (678)
93 KOG2171 Karyopherin (importin) 97.6 0.015 3.2E-07 69.5 24.1 255 391-672 5-279 (1075)
94 KOG4159 Predicted E3 ubiquitin 97.6 4.8E-05 1E-09 82.4 3.5 71 286-357 79-154 (398)
95 KOG2973 Uncharacterized conser 97.6 0.0022 4.7E-08 66.0 15.1 189 435-629 6-206 (353)
96 PTZ00429 beta-adaptin; Provisi 97.5 0.019 4.1E-07 68.0 24.5 256 391-672 141-435 (746)
97 PF14664 RICTOR_N: Rapamycin-i 97.5 0.013 2.8E-07 64.0 20.7 248 412-667 5-265 (371)
98 PF10165 Ric8: Guanine nucleot 97.5 0.0068 1.5E-07 68.1 19.0 276 401-688 43-355 (446)
99 KOG2023 Nuclear transport rece 97.4 0.0038 8.3E-08 70.0 15.8 268 390-672 128-464 (885)
100 PF00514 Arm: Armadillo/beta-c 97.4 0.00022 4.8E-09 51.7 4.3 41 586-627 1-41 (41)
101 PTZ00429 beta-adaptin; Provisi 97.4 0.04 8.6E-07 65.4 25.2 247 390-666 32-280 (746)
102 KOG4413 26S proteasome regulat 97.4 0.015 3.3E-07 60.2 18.4 258 399-661 91-366 (524)
103 KOG4413 26S proteasome regulat 97.3 0.036 7.7E-07 57.6 20.1 276 390-670 128-438 (524)
104 PF12861 zf-Apc11: Anaphase-pr 97.3 0.00029 6.3E-09 58.8 4.0 47 291-337 32-82 (85)
105 smart00185 ARM Armadillo/beta- 97.2 0.00072 1.6E-08 48.5 5.1 40 422-461 2-41 (41)
106 KOG0824 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 73.5 2.1 48 293-340 9-56 (324)
107 KOG2879 Predicted E3 ubiquitin 97.2 0.00026 5.7E-09 71.0 3.3 49 289-337 237-287 (298)
108 KOG0802 E3 ubiquitin ligase [P 97.2 0.00018 3.9E-09 82.7 2.4 48 289-337 289-341 (543)
109 KOG3678 SARM protein (with ste 97.1 0.0066 1.4E-07 65.4 13.2 171 424-598 172-349 (832)
110 KOG2734 Uncharacterized conser 97.1 0.096 2.1E-06 56.6 21.8 237 390-629 125-402 (536)
111 COG5152 Uncharacterized conser 97.1 0.0002 4.4E-09 68.0 1.4 46 291-337 196-241 (259)
112 PF13646 HEAT_2: HEAT repeats; 97.1 0.0021 4.6E-08 54.6 7.5 86 392-499 1-87 (88)
113 PF13646 HEAT_2: HEAT repeats; 97.0 0.003 6.5E-08 53.7 8.0 85 434-541 1-87 (88)
114 KOG1059 Vesicle coat complex A 97.0 0.068 1.5E-06 60.9 20.2 256 388-670 179-442 (877)
115 PF11841 DUF3361: Domain of un 97.0 0.017 3.8E-07 54.6 13.5 127 511-638 6-142 (160)
116 PF12348 CLASP_N: CLASP N term 97.0 0.011 2.4E-07 60.1 13.4 182 398-586 15-207 (228)
117 TIGR02270 conserved hypothetic 97.0 0.056 1.2E-06 59.8 19.6 219 390-671 54-296 (410)
118 KOG1813 Predicted E3 ubiquitin 97.0 0.00032 7E-09 71.2 1.8 60 291-352 241-300 (313)
119 PF05659 RPW8: Arabidopsis bro 97.0 0.013 2.8E-07 55.2 12.4 92 53-145 30-122 (147)
120 KOG1242 Protein containing ada 97.0 0.039 8.4E-07 62.1 17.9 270 391-675 135-449 (569)
121 PF12348 CLASP_N: CLASP N term 96.9 0.013 2.8E-07 59.5 13.0 185 485-675 17-210 (228)
122 KOG1002 Nucleotide excision re 96.8 0.0007 1.5E-08 73.2 3.0 52 288-339 533-588 (791)
123 KOG4628 Predicted E3 ubiquitin 96.8 0.00065 1.4E-08 71.8 2.6 47 292-338 230-279 (348)
124 COG5243 HRD1 HRD ubiquitin lig 96.8 0.0007 1.5E-08 70.4 2.7 47 289-336 285-344 (491)
125 KOG0212 Uncharacterized conser 96.7 0.048 1.1E-06 60.5 16.0 232 391-629 209-446 (675)
126 COG5231 VMA13 Vacuolar H+-ATPa 96.7 0.09 2E-06 54.6 16.4 228 440-670 157-427 (432)
127 TIGR02270 conserved hypothetic 96.6 0.17 3.8E-06 56.0 20.0 57 559-628 241-297 (410)
128 KOG1789 Endocytosis protein RM 96.6 0.27 5.9E-06 58.2 21.5 203 402-609 1784-2141(2235)
129 COG5540 RING-finger-containing 96.6 0.0011 2.4E-08 67.3 2.2 47 292-338 324-373 (374)
130 COG5240 SEC21 Vesicle coat com 96.4 0.39 8.4E-06 53.6 20.3 263 391-674 265-558 (898)
131 KOG0212 Uncharacterized conser 96.4 0.3 6.4E-06 54.5 19.4 270 390-671 167-444 (675)
132 KOG1062 Vesicle coat complex A 96.4 0.44 9.6E-06 55.3 21.3 142 521-671 256-415 (866)
133 COG1413 FOG: HEAT repeat [Ener 96.3 0.23 5E-06 53.6 18.6 162 432-628 43-210 (335)
134 smart00185 ARM Armadillo/beta- 96.3 0.0077 1.7E-07 43.0 4.7 40 506-546 2-41 (41)
135 KOG2023 Nuclear transport rece 96.3 0.15 3.2E-06 57.8 16.5 267 389-671 173-505 (885)
136 KOG0804 Cytoplasmic Zn-finger 96.2 0.0019 4E-08 69.2 1.4 49 286-337 170-222 (493)
137 PF11841 DUF3361: Domain of un 96.2 0.089 1.9E-06 49.9 12.5 120 426-546 5-131 (160)
138 KOG4367 Predicted Zn-finger pr 96.2 0.0022 4.8E-08 67.9 1.8 36 289-324 2-37 (699)
139 COG1413 FOG: HEAT repeat [Ener 96.1 0.86 1.9E-05 49.1 21.6 184 390-625 43-240 (335)
140 KOG0826 Predicted E3 ubiquitin 96.1 0.0034 7.3E-08 64.8 2.6 52 286-338 295-347 (357)
141 KOG1517 Guanine nucleotide bin 96.1 0.17 3.6E-06 60.0 16.3 220 407-629 487-734 (1387)
142 KOG3036 Protein involved in ce 96.0 0.36 7.7E-06 48.6 16.2 148 405-555 94-256 (293)
143 KOG1734 Predicted RING-contain 96.0 0.0016 3.4E-08 65.2 -0.2 56 289-344 222-288 (328)
144 KOG4151 Myosin assembly protei 96.0 0.21 4.5E-06 57.9 16.4 224 421-653 493-723 (748)
145 KOG4172 Predicted E3 ubiquitin 95.9 0.0026 5.6E-08 47.7 0.6 46 292-337 8-54 (62)
146 KOG1077 Vesicle coat complex A 95.9 0.71 1.5E-05 52.8 19.6 262 388-673 109-400 (938)
147 KOG3039 Uncharacterized conser 95.8 0.0045 9.7E-08 61.2 2.0 54 289-343 219-276 (303)
148 KOG1242 Protein containing ada 95.8 0.43 9.3E-06 54.0 17.3 220 391-629 255-485 (569)
149 KOG0289 mRNA splicing factor [ 95.7 0.034 7.4E-07 59.6 8.2 51 292-343 1-52 (506)
150 COG5369 Uncharacterized conser 95.7 0.033 7.2E-07 61.3 7.9 268 390-670 431-740 (743)
151 KOG3036 Protein involved in ce 95.6 2.8 6.1E-05 42.4 20.4 231 392-627 28-291 (293)
152 PF09759 Atx10homo_assoc: Spin 95.6 0.049 1.1E-06 47.7 7.4 64 572-637 2-68 (102)
153 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.0071 1.5E-07 62.9 2.6 53 288-342 110-166 (260)
154 COG5369 Uncharacterized conser 95.5 0.093 2E-06 58.0 10.7 197 408-607 407-617 (743)
155 PF09759 Atx10homo_assoc: Spin 95.5 0.054 1.2E-06 47.5 7.4 64 407-470 3-69 (102)
156 PF11793 FANCL_C: FANCL C-term 95.3 0.0041 8.9E-08 50.8 -0.3 48 291-338 2-67 (70)
157 KOG1248 Uncharacterized conser 95.3 0.81 1.8E-05 55.4 18.3 218 442-670 664-897 (1176)
158 PF11698 V-ATPase_H_C: V-ATPas 95.2 0.058 1.3E-06 48.6 6.8 72 389-460 42-114 (119)
159 KOG2259 Uncharacterized conser 95.2 0.32 6.9E-06 55.2 13.7 221 395-637 203-484 (823)
160 KOG0828 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 63.5 2.8 51 288-338 568-635 (636)
161 COG5194 APC11 Component of SCF 95.2 0.021 4.7E-07 46.4 3.4 45 292-337 32-81 (88)
162 KOG1241 Karyopherin (importin) 95.2 2.3 4.9E-05 49.4 20.4 237 394-638 263-541 (859)
163 PF04078 Rcd1: Cell differenti 95.1 0.34 7.3E-06 49.6 12.4 149 405-556 65-228 (262)
164 KOG1059 Vesicle coat complex A 94.9 2.2 4.8E-05 49.2 19.4 217 389-628 143-366 (877)
165 KOG2999 Regulator of Rac1, req 94.9 0.67 1.4E-05 51.7 14.7 158 476-636 85-251 (713)
166 KOG1241 Karyopherin (importin) 94.8 2.1 4.5E-05 49.7 19.0 274 390-673 129-437 (859)
167 KOG1078 Vesicle coat complex C 94.8 1.6 3.6E-05 50.6 18.1 262 391-673 246-534 (865)
168 KOG1039 Predicted E3 ubiquitin 94.7 0.02 4.3E-07 61.1 2.8 50 288-337 158-221 (344)
169 PF10165 Ric8: Guanine nucleot 94.7 0.27 5.8E-06 55.3 11.8 172 410-583 1-216 (446)
170 PF13764 E3_UbLigase_R4: E3 ub 94.7 4.1 8.9E-05 48.8 21.9 239 427-671 112-406 (802)
171 COG5096 Vesicle coat complex, 94.7 1 2.2E-05 53.0 16.6 100 435-545 95-194 (757)
172 PF13513 HEAT_EZ: HEAT-like re 94.6 0.059 1.3E-06 41.5 4.6 55 489-544 1-55 (55)
173 KOG1077 Vesicle coat complex A 94.5 7.3 0.00016 45.0 22.1 246 407-671 306-587 (938)
174 PF04078 Rcd1: Cell differenti 94.5 0.87 1.9E-05 46.7 13.8 191 403-595 8-228 (262)
175 KOG1061 Vesicle coat complex A 94.5 0.63 1.4E-05 53.9 14.2 71 391-464 122-192 (734)
176 smart00744 RINGv The RING-vari 94.5 0.054 1.2E-06 40.8 3.9 41 293-333 1-49 (49)
177 COG5231 VMA13 Vacuolar H+-ATPa 94.5 2.3 4.9E-05 44.6 16.7 224 400-626 159-427 (432)
178 KOG2259 Uncharacterized conser 94.3 0.96 2.1E-05 51.5 14.5 211 437-669 203-473 (823)
179 KOG3800 Predicted E3 ubiquitin 94.2 0.034 7.3E-07 56.8 3.0 49 293-341 2-55 (300)
180 PF13513 HEAT_EZ: HEAT-like re 94.2 0.092 2E-06 40.4 4.8 55 446-502 1-55 (55)
181 COG5240 SEC21 Vesicle coat com 94.1 3.1 6.7E-05 46.8 17.7 220 389-628 222-461 (898)
182 KOG0213 Splicing factor 3b, su 94.0 4.3 9.3E-05 47.1 18.9 153 390-545 799-953 (1172)
183 KOG1645 RING-finger-containing 93.9 0.028 6.2E-07 59.7 1.8 60 291-350 4-69 (463)
184 PF04063 DUF383: Domain of unk 93.9 0.38 8.3E-06 47.5 9.7 121 530-652 8-157 (192)
185 KOG1062 Vesicle coat complex A 93.9 4.9 0.00011 47.0 19.5 224 387-629 139-416 (866)
186 KOG2817 Predicted E3 ubiquitin 93.9 0.034 7.4E-07 59.3 2.4 47 288-334 331-382 (394)
187 COG5219 Uncharacterized conser 93.8 0.028 6.1E-07 65.2 1.6 51 287-337 1465-1523(1525)
188 KOG4692 Predicted E3 ubiquitin 93.7 0.037 8E-07 57.5 2.2 47 289-336 420-466 (489)
189 KOG2611 Neurochondrin/leucine- 93.7 1.6 3.4E-05 48.0 14.4 143 480-627 17-182 (698)
190 KOG1824 TATA-binding protein-i 93.5 3.6 7.8E-05 48.9 17.7 265 394-673 9-288 (1233)
191 KOG0825 PHD Zn-finger protein 93.5 0.019 4.2E-07 65.2 -0.3 50 289-339 121-173 (1134)
192 PF04063 DUF383: Domain of unk 93.5 0.46 9.9E-06 47.0 9.3 123 445-567 8-156 (192)
193 COG5181 HSH155 U2 snRNP splice 93.4 1.8 3.9E-05 48.9 14.6 216 431-671 687-912 (975)
194 COG5181 HSH155 U2 snRNP splice 93.4 5.1 0.00011 45.5 17.9 153 389-546 603-759 (975)
195 PF06371 Drf_GBD: Diaphanous G 93.4 0.67 1.5E-05 45.3 10.5 110 391-503 67-186 (187)
196 COG5175 MOT2 Transcriptional r 93.4 0.063 1.4E-06 55.5 3.2 48 293-340 16-67 (480)
197 PF12755 Vac14_Fab1_bd: Vacuol 93.3 0.55 1.2E-05 41.0 8.6 68 600-670 29-96 (97)
198 PF06371 Drf_GBD: Diaphanous G 93.2 0.26 5.7E-06 48.3 7.2 77 551-627 100-187 (187)
199 KOG0827 Predicted E3 ubiquitin 93.2 0.054 1.2E-06 57.2 2.3 47 292-338 5-57 (465)
200 PF14570 zf-RING_4: RING/Ubox 93.1 0.07 1.5E-06 39.7 2.2 43 294-336 1-47 (48)
201 KOG4265 Predicted E3 ubiquitin 92.9 0.062 1.3E-06 56.7 2.4 47 291-338 290-337 (349)
202 KOG1248 Uncharacterized conser 92.8 3.8 8.1E-05 50.0 16.9 228 400-639 664-910 (1176)
203 KOG1785 Tyrosine kinase negati 92.7 0.058 1.3E-06 57.0 1.9 47 293-339 371-418 (563)
204 KOG3039 Uncharacterized conser 92.7 0.069 1.5E-06 53.0 2.3 39 286-324 38-76 (303)
205 KOG2979 Protein involved in DN 92.7 0.095 2.1E-06 52.8 3.3 43 291-333 176-220 (262)
206 PF02891 zf-MIZ: MIZ/SP-RING z 92.7 0.092 2E-06 39.8 2.4 45 291-335 2-50 (50)
207 KOG1493 Anaphase-promoting com 92.4 0.081 1.8E-06 42.8 1.9 50 288-337 28-81 (84)
208 PF05004 IFRD: Interferon-rela 92.2 7 0.00015 41.8 16.9 181 439-626 50-256 (309)
209 KOG0213 Splicing factor 3b, su 92.0 9.2 0.0002 44.5 17.8 275 389-671 635-954 (1172)
210 KOG1517 Guanine nucleotide bin 91.9 3.1 6.6E-05 50.0 14.4 189 476-671 474-671 (1387)
211 PF08569 Mo25: Mo25-like; Int 91.8 4.2 9.2E-05 43.8 14.7 217 389-609 75-308 (335)
212 PF05004 IFRD: Interferon-rela 91.8 12 0.00026 40.0 18.2 187 478-671 47-257 (309)
213 PF14447 Prok-RING_4: Prokaryo 91.8 0.075 1.6E-06 40.5 1.0 47 291-340 7-53 (55)
214 PF12719 Cnd3: Nuclear condens 91.5 6.7 0.00015 41.6 16.0 167 432-609 26-208 (298)
215 KOG1824 TATA-binding protein-i 91.3 6.9 0.00015 46.7 16.3 230 388-631 45-290 (1233)
216 KOG2114 Vacuolar assembly/sort 91.0 0.59 1.3E-05 54.5 7.5 44 287-334 836-880 (933)
217 PF08569 Mo25: Mo25-like; Int 91.0 26 0.00057 37.8 22.2 219 427-651 71-306 (335)
218 KOG1001 Helicase-like transcri 90.9 0.07 1.5E-06 62.5 0.1 48 292-340 455-503 (674)
219 KOG4151 Myosin assembly protei 90.9 3.8 8.2E-05 47.9 13.8 203 460-671 491-700 (748)
220 KOG1571 Predicted E3 ubiquitin 90.7 0.12 2.5E-06 54.7 1.5 48 286-337 300-347 (355)
221 COG5215 KAP95 Karyopherin (imp 90.7 35 0.00075 38.9 20.7 277 390-675 133-441 (858)
222 KOG2930 SCF ubiquitin ligase, 90.6 0.22 4.8E-06 42.8 2.8 27 308-335 80-106 (114)
223 PF07814 WAPL: Wings apart-lik 90.6 7.7 0.00017 42.4 15.7 231 390-630 21-302 (361)
224 KOG2611 Neurochondrin/leucine- 90.6 32 0.00069 38.3 20.0 226 395-627 16-274 (698)
225 PF08045 CDC14: Cell division 90.6 2.5 5.3E-05 43.6 10.9 97 407-504 108-208 (257)
226 KOG3113 Uncharacterized conser 90.5 0.16 3.5E-06 50.8 2.1 51 289-342 109-163 (293)
227 PF12755 Vac14_Fab1_bd: Vacuol 90.3 1.8 4E-05 37.7 8.4 92 407-502 3-94 (97)
228 KOG3161 Predicted E3 ubiquitin 90.2 0.14 3.1E-06 57.4 1.7 41 287-330 7-51 (861)
229 KOG1060 Vesicle coat complex A 90.0 12 0.00026 43.9 16.5 207 393-628 38-247 (968)
230 COG5220 TFB3 Cdk activating ki 90.0 0.13 2.8E-06 50.8 1.0 47 291-337 10-64 (314)
231 KOG1061 Vesicle coat complex A 89.9 6.8 0.00015 45.7 14.7 246 391-661 50-298 (734)
232 PF05290 Baculo_IE-1: Baculovi 89.6 0.38 8.3E-06 43.5 3.6 50 290-339 79-134 (140)
233 PF12717 Cnd1: non-SMC mitotic 89.1 14 0.0003 36.0 14.6 92 403-505 1-93 (178)
234 KOG4185 Predicted E3 ubiquitin 89.0 0.32 7E-06 51.6 3.2 64 291-354 3-77 (296)
235 PF12719 Cnd3: Nuclear condens 88.9 24 0.00051 37.4 17.4 167 391-568 27-207 (298)
236 COG5096 Vesicle coat complex, 88.9 9.5 0.00021 45.2 15.2 105 389-504 91-195 (757)
237 PF12031 DUF3518: Domain of un 88.7 1.3 2.8E-05 44.8 6.9 82 447-529 139-228 (257)
238 KOG2999 Regulator of Rac1, req 88.1 7.9 0.00017 43.5 13.0 150 518-670 84-241 (713)
239 PF14668 RICTOR_V: Rapamycin-i 88.1 1.4 3.1E-05 36.2 5.7 65 533-597 3-70 (73)
240 PF12717 Cnd1: non-SMC mitotic 87.9 13 0.00027 36.3 13.4 137 391-542 26-175 (178)
241 COG5209 RCD1 Uncharacterized p 87.8 8.9 0.00019 38.3 11.9 198 393-593 50-276 (315)
242 COG5209 RCD1 Uncharacterized p 87.6 2.4 5.1E-05 42.3 7.8 146 406-554 116-276 (315)
243 PF06025 DUF913: Domain of Unk 87.0 26 0.00056 38.6 16.6 83 403-486 122-208 (379)
244 PF12031 DUF3518: Domain of un 86.3 2.6 5.6E-05 42.7 7.5 89 572-661 140-235 (257)
245 PF13764 E3_UbLigase_R4: E3 ub 86.1 88 0.0019 37.9 21.3 210 389-603 116-381 (802)
246 PF02985 HEAT: HEAT repeat; I 86.1 1.1 2.4E-05 30.0 3.4 28 434-461 2-29 (31)
247 PF12460 MMS19_C: RNAPII trans 86.0 22 0.00048 39.6 15.8 128 518-650 272-414 (415)
248 KOG1943 Beta-tubulin folding c 84.7 71 0.0015 39.2 19.3 222 386-619 337-603 (1133)
249 KOG3002 Zn finger protein [Gen 84.5 0.82 1.8E-05 48.3 3.2 62 287-355 44-106 (299)
250 PF08324 PUL: PUL domain; Int 84.4 12 0.00025 39.0 11.9 184 435-619 66-266 (268)
251 PF05918 API5: Apoptosis inhib 84.2 6.1 0.00013 45.3 10.2 91 401-503 33-124 (556)
252 KOG0211 Protein phosphatase 2A 84.1 36 0.00079 40.7 16.8 264 393-671 358-625 (759)
253 KOG4275 Predicted E3 ubiquitin 84.1 0.17 3.6E-06 51.7 -2.0 41 291-336 300-341 (350)
254 KOG2274 Predicted importin 9 [ 83.9 85 0.0018 37.8 19.1 223 401-634 461-696 (1005)
255 PF11698 V-ATPase_H_C: V-ATPas 83.6 2.2 4.7E-05 38.6 5.1 73 473-545 42-114 (119)
256 PF11707 Npa1: Ribosome 60S bi 83.5 54 0.0012 35.3 16.9 157 391-549 57-240 (330)
257 KOG1941 Acetylcholine receptor 83.5 0.64 1.4E-05 49.3 1.9 44 290-333 364-412 (518)
258 COG5109 Uncharacterized conser 83.4 0.63 1.4E-05 48.1 1.8 48 286-333 331-383 (396)
259 KOG1814 Predicted E3 ubiquitin 83.2 1.4 3.1E-05 47.4 4.4 36 289-324 182-220 (445)
260 KOG2274 Predicted importin 9 [ 82.5 29 0.00062 41.6 14.6 219 443-671 461-689 (1005)
261 cd03569 VHS_Hrs_Vps27p VHS dom 82.3 7.4 0.00016 36.5 8.4 73 389-461 40-114 (142)
262 PF08045 CDC14: Cell division 81.7 19 0.0004 37.3 11.6 97 571-670 106-206 (257)
263 KOG0301 Phospholipase A2-activ 81.6 23 0.0005 40.9 13.2 166 397-568 551-726 (745)
264 COG5627 MMS21 DNA repair prote 81.5 0.86 1.9E-05 45.2 1.8 57 291-347 189-249 (275)
265 KOG0298 DEAD box-containing he 81.3 0.54 1.2E-05 57.3 0.5 46 287-333 1149-1195(1394)
266 PF14569 zf-UDP: Zinc-binding 81.3 2.1 4.5E-05 35.1 3.6 47 291-337 9-62 (80)
267 PF02985 HEAT: HEAT repeat; I 80.9 3.3 7.2E-05 27.6 4.1 29 600-628 2-30 (31)
268 PF06025 DUF913: Domain of Unk 80.9 63 0.0014 35.6 16.3 161 409-570 3-208 (379)
269 PF11701 UNC45-central: Myosin 80.8 6.9 0.00015 37.3 7.8 142 434-581 5-155 (157)
270 KOG0567 HEAT repeat-containing 80.5 76 0.0016 32.9 16.5 61 431-503 66-128 (289)
271 KOG4464 Signaling protein RIC- 80.5 93 0.002 34.2 16.5 104 404-507 111-234 (532)
272 PF12460 MMS19_C: RNAPII trans 80.2 45 0.00098 37.2 15.3 188 475-673 190-396 (415)
273 PF11701 UNC45-central: Myosin 79.9 6.8 0.00015 37.4 7.4 107 393-501 46-156 (157)
274 KOG1058 Vesicle coat complex C 79.8 47 0.001 39.1 14.9 188 432-628 134-347 (948)
275 COG5215 KAP95 Karyopherin (imp 79.6 27 0.00059 39.7 12.6 183 394-586 267-480 (858)
276 KOG1058 Vesicle coat complex C 79.3 1.4E+02 0.0031 35.3 18.9 59 401-464 217-275 (948)
277 KOG4362 Transcriptional regula 79.1 0.92 2E-05 52.4 1.4 50 289-338 19-70 (684)
278 cd03561 VHS VHS domain family; 78.0 14 0.0003 34.2 8.7 74 389-462 36-113 (133)
279 smart00288 VHS Domain present 77.5 13 0.00029 34.3 8.4 73 389-461 36-111 (133)
280 KOG3665 ZYG-1-like serine/thre 77.5 27 0.00058 41.7 12.9 188 413-622 494-692 (699)
281 cd03572 ENTH_epsin_related ENT 77.4 9.4 0.0002 34.7 7.1 72 600-671 40-119 (122)
282 TIGR00634 recN DNA repair prot 77.0 81 0.0018 36.8 16.6 79 54-137 179-263 (563)
283 KOG4535 HEAT and armadillo rep 76.6 4.9 0.00011 44.4 5.8 178 448-629 407-605 (728)
284 PF05918 API5: Apoptosis inhib 76.5 9.9 0.00021 43.6 8.6 96 390-499 59-157 (556)
285 KOG1788 Uncharacterized conser 76.3 1E+02 0.0022 37.8 16.4 237 398-652 475-784 (2799)
286 KOG1240 Protein kinase contain 76.1 2.2E+02 0.0047 35.8 19.7 253 403-673 436-727 (1431)
287 cd03568 VHS_STAM VHS domain fa 75.7 16 0.00034 34.4 8.4 74 389-462 36-111 (144)
288 KOG1078 Vesicle coat complex C 75.4 1.7E+02 0.0036 34.9 17.8 116 388-511 203-318 (865)
289 PF10367 Vps39_2: Vacuolar sor 75.2 0.91 2E-05 40.1 -0.1 34 286-319 73-108 (109)
290 KOG1788 Uncharacterized conser 74.9 65 0.0014 39.3 14.4 193 390-585 720-982 (2799)
291 cd03567 VHS_GGA VHS domain fam 74.7 18 0.00039 33.8 8.5 73 389-461 37-116 (139)
292 KOG0414 Chromosome condensatio 74.7 16 0.00034 44.8 9.8 138 433-584 920-1063(1251)
293 cd03568 VHS_STAM VHS domain fa 74.5 16 0.00036 34.3 8.2 70 600-670 39-109 (144)
294 PHA02825 LAP/PHD finger-like p 74.3 3.4 7.4E-05 38.9 3.5 48 290-338 7-60 (162)
295 KOG3665 ZYG-1-like serine/thre 74.3 86 0.0019 37.5 15.9 89 540-629 494-589 (699)
296 KOG3899 Uncharacterized conser 74.1 2 4.4E-05 43.9 2.1 32 309-340 325-368 (381)
297 KOG1943 Beta-tubulin folding c 73.9 1.2E+02 0.0027 37.2 16.7 229 431-672 340-616 (1133)
298 KOG2032 Uncharacterized conser 73.9 1.6E+02 0.0035 33.2 18.2 264 390-671 258-531 (533)
299 KOG4653 Uncharacterized conser 73.1 84 0.0018 37.7 14.8 211 446-670 741-963 (982)
300 PRK10869 recombination and rep 73.1 1.9E+02 0.0041 33.7 19.1 77 56-137 177-256 (553)
301 KOG1812 Predicted E3 ubiquitin 73.0 3.2 7E-05 45.6 3.5 69 291-360 146-228 (384)
302 KOG0414 Chromosome condensatio 72.8 53 0.0012 40.6 13.5 139 392-546 921-1064(1251)
303 PF08167 RIX1: rRNA processing 72.5 18 0.00038 34.8 8.2 111 474-585 25-143 (165)
304 KOG0883 Cyclophilin type, U bo 72.4 2.3 4.9E-05 45.4 2.0 52 291-343 40-91 (518)
305 KOG2025 Chromosome condensatio 72.4 28 0.0006 40.6 10.6 116 389-513 84-199 (892)
306 PF05605 zf-Di19: Drought indu 71.8 4.9 0.00011 30.8 3.3 38 290-334 1-39 (54)
307 PF11865 DUF3385: Domain of un 71.7 42 0.00091 32.1 10.5 143 473-624 9-154 (160)
308 PF10272 Tmpp129: Putative tra 71.4 2.8 6E-05 45.3 2.5 32 309-340 311-354 (358)
309 KOG2034 Vacuolar sorting prote 71.2 5.9 0.00013 46.9 5.2 38 287-324 813-852 (911)
310 KOG4739 Uncharacterized protei 71.2 1.6 3.5E-05 43.9 0.6 49 293-344 5-55 (233)
311 cd03569 VHS_Hrs_Vps27p VHS dom 70.6 23 0.0005 33.1 8.2 71 600-671 43-114 (142)
312 PF05883 Baculo_RING: Baculovi 70.5 4.6 0.0001 37.1 3.3 44 291-335 26-78 (134)
313 cd03561 VHS VHS domain family; 70.2 30 0.00064 31.9 8.8 71 600-671 39-112 (133)
314 KOG1820 Microtubule-associated 69.7 71 0.0015 38.7 13.8 177 394-584 257-442 (815)
315 PHA03096 p28-like protein; Pro 69.5 3.3 7.1E-05 43.5 2.5 43 292-334 179-231 (284)
316 KOG1940 Zn-finger protein [Gen 69.4 3.1 6.8E-05 43.1 2.3 43 291-334 158-204 (276)
317 PF14500 MMS19_N: Dos2-interac 68.5 1.5E+02 0.0033 30.8 17.5 221 395-630 4-240 (262)
318 KOG4718 Non-SMC (structural ma 68.5 2.7 5.9E-05 41.2 1.5 42 292-334 182-224 (235)
319 cd03567 VHS_GGA VHS domain fam 67.9 31 0.00067 32.2 8.4 71 600-671 40-116 (139)
320 PF14668 RICTOR_V: Rapamycin-i 67.8 21 0.00045 29.4 6.3 65 449-514 4-68 (73)
321 PF08167 RIX1: rRNA processing 67.5 48 0.001 31.8 10.0 110 434-546 27-143 (165)
322 PF08324 PUL: PUL domain; Int 67.2 85 0.0018 32.5 12.6 186 476-665 65-268 (268)
323 PF00790 VHS: VHS domain; Int 67.2 21 0.00045 33.3 7.2 70 600-670 44-117 (140)
324 PF14446 Prok-RING_1: Prokaryo 67.0 3.9 8.5E-05 31.3 1.8 30 291-320 5-38 (54)
325 KOG1820 Microtubule-associated 66.7 1.3E+02 0.0027 36.7 15.0 194 434-639 255-455 (815)
326 PHA02862 5L protein; Provision 66.7 4.8 0.0001 37.2 2.6 45 293-338 4-54 (156)
327 KOG2025 Chromosome condensatio 65.6 30 0.00065 40.3 9.1 116 431-556 84-200 (892)
328 PF03854 zf-P11: P-11 zinc fin 65.6 2.1 4.5E-05 31.6 0.1 39 300-339 9-48 (50)
329 COG3813 Uncharacterized protei 65.0 6.1 0.00013 31.8 2.6 35 310-347 28-62 (84)
330 PF14726 RTTN_N: Rotatin, an a 64.4 46 0.00099 29.1 8.2 91 490-580 2-95 (98)
331 COG5218 YCG1 Chromosome conden 62.4 65 0.0014 36.9 10.7 111 388-507 89-199 (885)
332 KOG1240 Protein kinase contain 62.0 1.5E+02 0.0032 37.1 14.2 227 390-628 462-726 (1431)
333 PF08746 zf-RING-like: RING-li 62.0 6.3 0.00014 28.8 2.0 39 294-332 1-43 (43)
334 PF00790 VHS: VHS domain; Int 62.0 26 0.00057 32.6 6.8 73 389-461 41-118 (140)
335 PF12530 DUF3730: Protein of u 61.6 1.9E+02 0.0041 29.4 17.6 137 393-545 3-150 (234)
336 smart00288 VHS Domain present 61.0 45 0.00097 30.8 8.1 70 600-670 39-110 (133)
337 KOG3970 Predicted E3 ubiquitin 60.7 18 0.00039 35.9 5.4 44 293-336 52-104 (299)
338 KOG4464 Signaling protein RIC- 60.6 1.3E+02 0.0029 33.0 12.2 131 477-609 48-198 (532)
339 PLN02189 cellulose synthase 59.5 5.3 0.00011 48.6 2.0 45 293-337 36-87 (1040)
340 KOG0211 Protein phosphatase 2A 58.9 2E+02 0.0042 34.8 14.6 250 393-663 401-656 (759)
341 PF06844 DUF1244: Protein of u 58.0 6.5 0.00014 31.2 1.6 13 312-324 11-23 (68)
342 KOG0301 Phospholipase A2-activ 57.5 2.4E+02 0.0052 33.0 14.2 162 438-609 550-727 (745)
343 PLN02436 cellulose synthase A 57.3 6 0.00013 48.2 1.9 46 292-337 37-89 (1094)
344 KOG2933 Uncharacterized conser 56.6 87 0.0019 33.2 9.9 141 390-543 88-231 (334)
345 COG5236 Uncharacterized conser 56.5 9.6 0.00021 40.1 3.0 49 288-336 58-107 (493)
346 PLN02195 cellulose synthase A 56.3 7.3 0.00016 47.2 2.4 45 293-337 8-59 (977)
347 PF14726 RTTN_N: Rotatin, an a 56.1 84 0.0018 27.5 8.4 93 405-499 2-95 (98)
348 KOG0309 Conserved WD40 repeat- 56.1 6.8 0.00015 45.4 2.0 45 289-334 1026-1073(1081)
349 PF10363 DUF2435: Protein of u 55.9 34 0.00073 29.5 5.8 71 391-463 4-74 (92)
350 KOG4653 Uncharacterized conser 55.2 1.4E+02 0.0031 35.9 12.3 170 488-671 740-918 (982)
351 PF12906 RINGv: RING-variant d 55.2 6.4 0.00014 29.3 1.1 39 294-332 1-47 (47)
352 PF07814 WAPL: Wings apart-lik 55.1 3.2E+02 0.0068 29.9 16.3 92 434-527 23-116 (361)
353 PF07191 zinc-ribbons_6: zinc- 54.8 0.59 1.3E-05 37.7 -4.7 42 291-338 1-42 (70)
354 PLN02638 cellulose synthase A 54.8 7.1 0.00015 47.7 2.0 45 293-337 19-70 (1079)
355 KOG3268 Predicted E3 ubiquitin 54.6 11 0.00024 35.9 2.8 46 293-338 167-229 (234)
356 smart00638 LPD_N Lipoprotein N 54.6 4E+02 0.0087 30.9 17.0 178 433-631 312-513 (574)
357 KOG2956 CLIP-associating prote 53.8 3.7E+02 0.008 30.3 17.4 182 391-583 287-475 (516)
358 PRK14707 hypothetical protein; 53.7 7.2E+02 0.016 33.7 20.3 258 394-664 167-438 (2710)
359 PF06416 DUF1076: Protein of u 53.0 6.7 0.00015 34.6 1.0 54 287-341 36-95 (113)
360 PF08317 Spc7: Spc7 kinetochor 52.5 2.9E+02 0.0063 29.7 13.8 104 11-123 38-147 (325)
361 PF11864 DUF3384: Domain of un 52.5 3E+02 0.0066 31.1 14.6 90 531-626 229-329 (464)
362 PF08216 CTNNBL: Catenin-beta- 51.8 18 0.00039 32.1 3.5 43 407-450 63-105 (108)
363 KOG2032 Uncharacterized conser 51.4 2E+02 0.0043 32.5 12.0 163 430-593 252-423 (533)
364 PF14353 CpXC: CpXC protein 51.0 8.4 0.00018 35.3 1.5 47 291-337 1-49 (128)
365 PF04499 SAPS: SIT4 phosphatas 50.5 1.2E+02 0.0025 34.6 10.7 112 558-672 21-150 (475)
366 PF11864 DUF3384: Domain of un 50.0 4.3E+02 0.0093 29.9 18.8 258 391-669 28-329 (464)
367 KOG1991 Nuclear transport rece 49.9 5.8E+02 0.013 31.4 17.8 135 390-528 410-558 (1010)
368 KOG1060 Vesicle coat complex A 49.6 3.1E+02 0.0068 32.8 13.7 31 516-546 70-100 (968)
369 PF11707 Npa1: Ribosome 60S bi 49.5 3.6E+02 0.0079 28.9 15.0 154 434-587 58-239 (330)
370 PF12530 DUF3730: Protein of u 49.3 3E+02 0.0065 28.0 13.6 138 476-629 2-153 (234)
371 KOG1566 Conserved protein Mo25 48.4 3.7E+02 0.008 28.7 18.5 217 389-609 78-311 (342)
372 KOG4535 HEAT and armadillo rep 48.1 50 0.0011 36.9 6.9 94 570-666 498-598 (728)
373 PF07800 DUF1644: Protein of u 48.0 5.8 0.00013 37.4 -0.1 21 290-310 1-21 (162)
374 KOG1991 Nuclear transport rece 47.7 4.3E+02 0.0092 32.5 14.8 113 432-550 410-536 (1010)
375 KOG1967 DNA repair/transcripti 47.4 1.2E+02 0.0027 36.7 10.3 146 473-621 866-1018(1030)
376 KOG0825 PHD Zn-finger protein 46.9 16 0.00035 42.7 3.1 48 286-333 91-150 (1134)
377 KOG2137 Protein kinase [Signal 46.8 1.1E+02 0.0023 36.1 9.6 132 474-617 389-527 (700)
378 COG0497 RecN ATPase involved i 46.8 5.2E+02 0.011 30.0 18.4 114 54-172 175-294 (557)
379 PLN02915 cellulose synthase A 46.3 11 0.00024 45.9 1.9 46 292-337 16-68 (1044)
380 PLN02400 cellulose synthase 45.7 9 0.00019 46.9 0.9 46 292-337 37-89 (1085)
381 PF10363 DUF2435: Protein of u 44.8 88 0.0019 26.9 6.7 75 562-638 7-83 (92)
382 PF13811 DUF4186: Domain of un 44.3 13 0.00029 32.7 1.6 21 303-324 64-87 (111)
383 KOG1020 Sister chromatid cohes 44.0 2.8E+02 0.0061 35.7 12.9 137 432-583 816-958 (1692)
384 KOG0915 Uncharacterized conser 44.0 8.6E+02 0.019 31.7 22.2 271 386-671 990-1306(1702)
385 KOG3579 Predicted E3 ubiquitin 44.0 17 0.00038 37.3 2.5 67 288-355 265-340 (352)
386 cd00197 VHS_ENTH_ANTH VHS, ENT 43.9 1.3E+02 0.0028 26.7 8.1 69 600-669 39-113 (115)
387 cd00350 rubredoxin_like Rubred 43.9 16 0.00035 24.9 1.6 10 326-335 17-26 (33)
388 COG5218 YCG1 Chromosome conden 43.8 3.7E+02 0.0081 31.2 12.8 94 467-568 86-179 (885)
389 KOG1815 Predicted E3 ubiquitin 43.5 22 0.00049 40.0 3.7 36 289-324 68-104 (444)
390 PF06497 DUF1098: Protein of u 43.3 1.3E+02 0.0028 26.1 7.4 57 22-81 13-71 (95)
391 KOG1967 DNA repair/transcripti 42.7 93 0.002 37.6 8.4 144 432-579 867-1018(1030)
392 KOG2137 Protein kinase [Signal 42.1 2.5E+02 0.0054 33.2 11.6 132 430-568 387-518 (700)
393 PF12231 Rif1_N: Rap1-interact 42.0 2.5E+02 0.0055 30.7 11.5 178 442-626 3-203 (372)
394 KOG0314 Predicted E3 ubiquitin 41.2 13 0.00028 41.3 1.2 67 286-354 214-284 (448)
395 PF14225 MOR2-PAG1_C: Cell mor 41.1 4.3E+02 0.0094 27.5 15.6 202 392-611 9-241 (262)
396 PRK06266 transcription initiat 40.6 29 0.00062 33.9 3.4 56 288-359 114-170 (178)
397 KOG1952 Transcription factor N 39.5 24 0.00052 41.8 3.0 46 289-334 189-244 (950)
398 PF13251 DUF4042: Domain of un 39.0 3E+02 0.0065 27.0 10.2 142 406-548 2-176 (182)
399 TIGR00373 conserved hypothetic 38.7 22 0.00048 34.0 2.3 36 288-339 106-141 (158)
400 PRK12495 hypothetical protein; 38.4 25 0.00054 35.1 2.6 32 216-251 7-38 (226)
401 KOG0915 Uncharacterized conser 38.4 1E+03 0.022 31.0 20.9 192 391-589 957-1164(1702)
402 cd00197 VHS_ENTH_ANTH VHS, ENT 38.0 2.1E+02 0.0045 25.3 8.5 70 390-459 37-113 (115)
403 PF14500 MMS19_N: Dos2-interac 37.9 4.8E+02 0.01 27.1 14.8 216 435-671 2-237 (262)
404 COG3492 Uncharacterized protei 37.8 20 0.00044 30.3 1.6 13 312-324 42-54 (104)
405 KOG1243 Protein kinase [Genera 37.5 5.4E+02 0.012 30.4 13.3 250 397-669 261-513 (690)
406 PF01347 Vitellogenin_N: Lipop 37.1 4.8E+02 0.01 30.5 13.7 129 434-582 433-586 (618)
407 KOG1992 Nuclear export recepto 36.6 4.7E+02 0.01 31.6 12.7 174 432-609 498-706 (960)
408 KOG2933 Uncharacterized conser 36.6 3.3E+02 0.0071 29.0 10.4 134 476-624 90-231 (334)
409 COG5098 Chromosome condensatio 36.5 4.2E+02 0.0092 31.4 12.0 130 531-669 276-413 (1128)
410 KOG2038 CAATT-binding transcri 36.1 5.5E+02 0.012 30.8 12.9 215 393-639 199-422 (988)
411 PF06906 DUF1272: Protein of u 35.9 30 0.00064 26.7 2.0 26 311-339 29-54 (57)
412 KOG3842 Adaptor protein Pellin 35.6 33 0.00071 35.9 3.0 50 289-339 339-416 (429)
413 PF06012 DUF908: Domain of Unk 35.3 1.7E+02 0.0036 31.6 8.6 68 490-557 237-308 (329)
414 PF04216 FdhE: Protein involve 35.1 4.8 0.0001 42.6 -3.2 44 291-335 172-220 (290)
415 PRK14707 hypothetical protein; 35.1 1.3E+03 0.029 31.4 21.7 213 392-609 375-594 (2710)
416 PF06676 DUF1178: Protein of u 34.7 14 0.0003 34.8 0.2 24 308-336 9-42 (148)
417 cd08324 CARD_NOD1_CARD4 Caspas 34.6 1.8E+02 0.0039 24.6 6.6 76 55-139 3-78 (85)
418 cd03565 VHS_Tom1 VHS domain fa 34.3 2.9E+02 0.0064 25.7 9.0 73 389-461 37-115 (141)
419 cd00730 rubredoxin Rubredoxin; 33.8 20 0.00044 27.1 0.9 14 286-299 29-42 (50)
420 PF12252 SidE: Dot/Icm substra 33.6 8.5E+02 0.018 30.4 14.2 141 95-248 1014-1170(1439)
421 COG1675 TFA1 Transcription ini 33.4 61 0.0013 31.5 4.3 55 287-357 109-164 (176)
422 COG4046 Uncharacterized protei 33.1 1.6E+02 0.0034 31.2 7.4 110 20-147 85-195 (368)
423 PF10497 zf-4CXXC_R1: Zinc-fin 32.4 47 0.001 29.4 3.1 25 310-334 37-69 (105)
424 KOG2062 26S proteasome regulat 32.3 2.2E+02 0.0049 33.7 9.1 94 516-625 553-651 (929)
425 PF11865 DUF3385: Domain of un 32.3 3.2E+02 0.0069 26.0 9.1 142 391-544 11-155 (160)
426 cd03565 VHS_Tom1 VHS domain fa 32.2 3E+02 0.0066 25.6 8.7 70 600-670 40-114 (141)
427 COG5098 Chromosome condensatio 32.1 1.4E+02 0.003 35.2 7.3 111 434-547 301-416 (1128)
428 PF10235 Cript: Microtubule-as 31.7 25 0.00054 30.1 1.2 38 291-338 44-81 (90)
429 PF04821 TIMELESS: Timeless pr 30.5 3.8E+02 0.0082 27.9 10.1 38 424-461 32-72 (266)
430 KOG1908 Ribonuclease inhibitor 30.0 59 0.0013 29.6 3.3 56 40-99 77-140 (165)
431 PF01417 ENTH: ENTH domain; I 29.9 90 0.002 28.3 4.7 94 573-672 20-122 (125)
432 PRK04023 DNA polymerase II lar 29.8 38 0.00083 41.2 2.7 49 288-339 623-676 (1121)
433 PRK11088 rrmA 23S rRNA methylt 29.7 25 0.00054 36.7 1.1 25 291-315 2-29 (272)
434 PF00301 Rubredoxin: Rubredoxi 29.7 22 0.00049 26.5 0.6 14 286-299 29-42 (47)
435 PF10521 DUF2454: Protein of u 29.6 4.6E+02 0.01 27.4 10.7 70 516-585 118-203 (282)
436 PF10571 UPF0547: Uncharacteri 29.6 24 0.00053 22.8 0.6 8 294-301 3-10 (26)
437 KOG2932 E3 ubiquitin ligase in 29.4 26 0.00057 36.5 1.1 42 292-336 91-133 (389)
438 KOG4445 Uncharacterized conser 28.8 23 0.00051 36.8 0.7 48 291-338 115-187 (368)
439 smart00531 TFIIE Transcription 28.7 23 0.0005 33.3 0.6 39 288-338 96-135 (147)
440 KOG2462 C2H2-type Zn-finger pr 28.7 32 0.0007 35.5 1.6 32 292-339 188-228 (279)
441 COG2176 PolC DNA polymerase II 28.6 35 0.00076 42.2 2.1 42 286-339 909-952 (1444)
442 KOG0396 Uncharacterized conser 28.5 37 0.0008 36.5 2.1 47 292-338 331-380 (389)
443 cd00729 rubredoxin_SM Rubredox 28.3 39 0.00084 23.3 1.5 10 326-335 18-27 (34)
444 cd08329 CARD_BIRC2_BIRC3 Caspa 28.2 2.3E+02 0.0051 24.4 6.7 56 53-109 9-64 (94)
445 COG5537 IRR1 Cohesin [Cell div 27.7 5.7E+02 0.012 29.8 11.1 143 394-546 279-422 (740)
446 TIGR01562 FdhE formate dehydro 27.6 13 0.00028 39.5 -1.4 44 291-335 184-233 (305)
447 KOG2199 Signal transducing ada 27.2 2.6E+02 0.0056 30.7 8.0 72 599-671 46-118 (462)
448 PF10083 DUF2321: Uncharacteri 27.2 2.8E+02 0.006 26.4 7.3 93 310-426 27-122 (158)
449 PF01347 Vitellogenin_N: Lipop 27.2 1E+03 0.023 27.7 15.2 207 391-624 348-586 (618)
450 PRK00420 hypothetical protein; 27.1 29 0.00063 31.0 0.9 29 292-338 24-52 (112)
451 KOG2062 26S proteasome regulat 27.0 2.7E+02 0.0058 33.1 8.6 87 434-531 590-679 (929)
452 PF04641 Rtf2: Rtf2 RING-finge 26.7 64 0.0014 33.5 3.5 35 291-325 34-69 (260)
453 PRK03564 formate dehydrogenase 26.6 17 0.00038 38.5 -0.7 44 290-334 186-234 (309)
454 COG5116 RPN2 26S proteasome re 26.6 3.2E+02 0.007 31.5 8.9 97 516-627 550-650 (926)
455 KOG1832 HIV-1 Vpr-binding prot 26.5 3.3E+02 0.0073 33.1 9.3 155 408-568 327-490 (1516)
456 COG2178 Predicted RNA-binding 26.5 4.3E+02 0.0093 26.2 8.7 80 32-111 18-102 (204)
457 PF07923 N1221: N1221-like pro 26.3 1.6E+02 0.0034 31.2 6.4 56 388-443 58-127 (293)
458 COG5183 SSM4 Protein involved 26.2 55 0.0012 38.7 3.0 51 289-339 10-68 (1175)
459 PF14225 MOR2-PAG1_C: Cell mor 26.0 7.6E+02 0.016 25.7 12.6 133 391-544 112-252 (262)
460 KOG1086 Cytosolic sorting prot 25.9 8.6E+02 0.019 27.1 11.6 119 391-510 46-208 (594)
461 KOG2169 Zn-finger transcriptio 25.8 49 0.0011 39.1 2.7 67 286-354 301-373 (636)
462 PF12726 SEN1_N: SEN1 N termin 25.6 4E+02 0.0087 32.1 10.5 121 518-639 442-566 (727)
463 PF09538 FYDLN_acid: Protein o 25.4 37 0.0008 30.2 1.3 14 326-339 26-39 (108)
464 PF14666 RICTOR_M: Rapamycin-i 25.2 6.6E+02 0.014 25.5 10.4 132 487-627 76-225 (226)
465 KOG1087 Cytosolic sorting prot 25.0 2.1E+02 0.0045 32.4 7.3 70 390-459 38-110 (470)
466 cd08330 CARD_ASC_NALP1 Caspase 24.9 2.7E+02 0.0058 23.3 6.3 54 55-109 3-56 (82)
467 PF08580 KAR9: Yeast cortical 24.4 1.3E+03 0.028 27.7 14.4 74 60-139 4-81 (683)
468 PRK11820 hypothetical protein; 24.4 8.2E+02 0.018 25.8 11.2 130 59-229 154-287 (288)
469 KOG2911 Uncharacterized conser 24.3 8.2E+02 0.018 27.2 11.3 21 168-188 366-386 (439)
470 PF10521 DUF2454: Protein of u 23.8 5.4E+02 0.012 26.9 9.9 50 433-483 120-171 (282)
471 PRK13848 conjugal transfer pro 23.5 2.3E+02 0.0049 24.4 5.4 19 149-167 5-23 (98)
472 PF12830 Nipped-B_C: Sister ch 23.4 2.9E+02 0.0062 27.0 7.3 66 600-672 10-75 (187)
473 PF00619 CARD: Caspase recruit 23.3 2.8E+02 0.006 22.8 6.3 61 54-115 3-64 (85)
474 COG1592 Rubrerythrin [Energy p 22.7 48 0.001 31.9 1.5 25 291-335 134-158 (166)
475 KOG0567 HEAT repeat-containing 22.6 5E+02 0.011 27.1 8.7 87 391-500 188-276 (289)
476 PRK06424 transcription factor; 22.4 3.1E+02 0.0067 25.8 6.8 63 147-210 73-139 (144)
477 KOG2011 Sister chromatid cohes 22.2 8.2E+02 0.018 30.7 11.9 138 401-547 298-436 (1048)
478 KOG2676 Uncharacterized conser 22.0 87 0.0019 33.7 3.3 61 410-470 376-439 (478)
479 KOG0972 Huntingtin interacting 22.0 4.3E+02 0.0092 27.7 8.1 95 124-231 229-329 (384)
480 PF09889 DUF2116: Uncharacteri 21.9 52 0.0011 25.9 1.3 15 325-339 2-16 (59)
481 COG0598 CorA Mg2+ and Co2+ tra 21.6 9.9E+02 0.022 25.4 11.7 92 69-167 141-233 (322)
482 KOG3475 60S ribosomal protein 21.4 53 0.0012 27.4 1.3 28 310-337 15-42 (92)
483 KOG3476 Microtubule-associated 21.2 16 0.00036 30.5 -1.6 38 291-338 54-91 (100)
484 KOG1243 Protein kinase [Genera 20.8 1E+03 0.023 28.2 11.8 71 555-628 327-399 (690)
485 PF12773 DZR: Double zinc ribb 20.7 58 0.0013 24.2 1.4 13 290-302 11-23 (50)
486 PF06685 DUF1186: Protein of u 20.7 6.9E+02 0.015 25.8 9.6 135 497-639 5-153 (249)
487 KOG1609 Protein involved in mR 20.6 64 0.0014 34.2 2.2 49 291-339 78-136 (323)
488 KOG1020 Sister chromatid cohes 20.4 2E+03 0.043 28.6 14.6 129 491-630 793-924 (1692)
489 PRK11595 DNA utilization prote 20.2 60 0.0013 32.9 1.7 39 293-337 7-45 (227)
490 KOG4231 Intracellular membrane 20.1 2.1E+02 0.0045 32.4 5.8 62 442-504 338-399 (763)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=7.2e-27 Score=286.41 Aligned_cols=279 Identities=24% Similarity=0.274 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 388 NRATAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
....+.+|++.|+++ +++.+..|+..|+.+++.+++||..|++ .|+||.|+.+|++++..++++|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 356889999999976 8899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC---chhHHHHhcccCcHHHHHHHhhcCCh---hHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV---HEYKKKIADESGAVEALATLLRLGTP---RGKKDAV 538 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~I~~~~g~I~~Lv~LL~~~~~---~~~~~A~ 538 (715)
+|..|+ ..|+|++|+++|++| +.+.+++|+++|++|+.+ +.++..|+...|+||.|+.++++++. ..+..|+
T Consensus 91 nk~~Iv-~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 91 LRVKVL-LGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHH-HcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 999999 899999999999999 999999999999999987 45676777669999999999998752 2456778
Q ss_pred HHHHHhhcCCccHHH-HHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCC-hH
Q 038217 539 TALFNLSTHTDNCVR-MIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGT-PR 613 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~-iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s-~~ 613 (715)
.+|+|||.+++|+.+ ++++|+||.|+.+|+ ++.++..|+.+|.+++.+ ++++..+++.|+ ||.|+++|++++ +.
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa-VP~LV~LL~sg~~~~ 247 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGA-VKQLLKLLGQGNEVS 247 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC-HHHHHHHHccCCChH
Confidence 999999999999865 589999999999996 679999999999988865 679999999999 999999998764 58
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCH---------HHHHHHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK---------RARRKAASLARVFQR 671 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~---------~~k~~A~~lL~~l~~ 671 (715)
.|++|+++|++||.++ .+.+..+.+ .|+++.|+.++.+.+. ..++.|.+.|..+..
T Consensus 248 VRE~AA~AL~nLAs~s-~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 248 VRAEAAGALEALSSQS-KEAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999999986 667778887 9999999999986543 348899998888775
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=275.51 Aligned_cols=281 Identities=23% Similarity=0.297 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..+.++.|+++|.+++.+.|..|++.|++++..+++++..|+++|+||+|+++|++++..+|++|+++|.|++.+++++.
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999887755
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-------------------------------------H
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-------------------------------------K 510 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------------------------------------~ 510 (715)
.++...|++++|+++|+++ +.+.++.|+++|++|+...+.. .
T Consensus 524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 5553789999999999999 9999999999999996432211 1
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC-CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH-TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ- 586 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~- 586 (715)
......|+++.|+++++++++..++.|+++|.|++.. ++++..++..|+|++|+.+|+ +.+++..++++|.+|+..
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 1112368999999999999999999999999999975 557888999999999999996 568999999999999863
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
.+++..+++.|+ |++|++++.+.+...++.|+.+|.+++..+ +....+.. .|+++.|+.++++|++++|+.|+++
T Consensus 683 ~~~q~~~~v~~Ga-V~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~-~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 683 KENRKVSYAAEDA-IKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALA-EDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred CHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHH
Confidence 445677888888 999999999999999999999999999985 34566666 7889999999999999999999986
Q ss_pred HHHHHHhh
Q 038217 666 ARVFQRCE 673 (715)
Q Consensus 666 L~~l~~~~ 673 (715)
|..|.+..
T Consensus 759 L~~L~~~~ 766 (2102)
T PLN03200 759 LAQLLKHF 766 (2102)
T ss_pred HHHHHhCC
Confidence 66555433
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=221.45 Aligned_cols=274 Identities=20% Similarity=0.266 Sum_probs=250.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
|.+..+.+.-++.+..+|..+...|.++. ++.+||..++.+|++|.||.+|+++|.++|+++.+++.|++.+..+|+.+
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 46677777556888899999999999999 56899999999999999999999999999999999999999999999999
Q ss_pred hhhcC--cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 470 MDEEG--CLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 470 ~~~~g--~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
+ +.| .++.||+++..+ +..++-.|.-+|.+|+...+|...|++ .|++|.|+++|++...........++.|++.+
T Consensus 246 a-qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 246 A-QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred H-hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 8 777 999999999999 999999999999999999999999999 99999999999887777777888999999999
Q ss_pred CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
+.|-..++++|.+.+||.+|+ +++++-+|+..|+||+. ...++..|.+.|+ |+.+.+++..++-..|+.-.+++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA-i~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA-IPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-hHHHHHHHhcCChhHHHHHHHHHH
Confidence 999999999999999999996 55799999999999987 5669999999999 999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 624 ELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 624 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.|+.+ +..+..+.. .|+++.|..+..+.+..++..|++.|-.|..
T Consensus 402 ~Lal~--d~~k~~lld-~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 402 QLALN--DNDKEALLD-SGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHhc--cccHHHHhh-cCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 99988 456778887 9999999999999999999888877666654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3e-24 Score=218.03 Aligned_cols=273 Identities=22% Similarity=0.299 Sum_probs=247.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..|+....++..++|+.++.+|.+|+.. ++||..|+..|++.+|.+|-+++|..+|.+|..+|.|+....+||..++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 556778888888889999999999999976 7999999999999999998899999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC--cHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG--AVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g--~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
.+|++|.||.+++++ +..+++.++.++.+++....+++.+++ .+ .|+.||+++.++++.++-.|..+|.||+.+.
T Consensus 206 -~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 206 -HAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred -ccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 999999999999999 999999999999999999999999887 66 9999999999999999999999999999999
Q ss_pred ccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLEL 625 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L 625 (715)
+-...++++|.+|.++++|+++ ...-..+..+.|++-++-+...|.+.|. +.+||.+|+.+ +.+.|-+|+.+||+|
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagf-l~pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGF-LRPLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccc-hhHHHHHHhcCCchhhhhhHHHHHHHH
Confidence 9999999999999999999854 6778889999999999999999999888 99999999986 456999999999999
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
+... +..+..+.. .|.++.|.+|+.+|.-..+..-...+..|.
T Consensus 362 Aass-e~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 362 AASS-EHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhh-hhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9865 445556655 999999999999998888766665555554
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.7e-22 Score=216.86 Aligned_cols=277 Identities=22% Similarity=0.223 Sum_probs=241.1
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~ 467 (715)
|.|+.+|..|. ..++..|..|++.|.+++..+.+.-..++++|++|.++.+|.+++..+++.|+++|.|++.+... |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 68899999997 55699999999999999999999999999999999999999999999999999999999998866 66
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.+. ..|++++|+.++..........+++++|.+|+....-...+.....++|.|..++.+.++.+..+|+++|..|+..
T Consensus 189 ~vl-~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 189 YVL-SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHH-hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 777 9999999999998873447889999999999987754444444467999999999999999999999999999976
Q ss_pred Cc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHH
Q 038217 548 TD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAAL 622 (715)
Q Consensus 548 ~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L 622 (715)
+. ....++++|+++.|+.+|. +..++.-|+.++.|++...+ -.+.++..|+ ++.|..++.. .....|+.|++++
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~-L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA-LPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh-HHHHHHHhccCcchhHHHHHHHHH
Confidence 55 5555679999999999997 45788889999999987655 5566788888 9999999984 4556889999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.|++.++ .+..++++. +|++|.|+.+++++.-+.|+.|++.+..+.
T Consensus 347 SNItAG~-~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 347 SNITAGN-QEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHhhcCC-HHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 9999987 556678888 999999999999999999999999887654
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-20 Score=204.77 Aligned_cols=283 Identities=19% Similarity=0.220 Sum_probs=251.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCH-HHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNP-VAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~-~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.++.++..|.|.+.+++.+|+++|.+++.+++..|..+.+.|++++|+.++...+. .+..+++|+|.||+.+.+....
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 578899999999999999999999999999999999999999999999999988765 7899999999999988765444
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
+.....+++.|..+|.+. +.++...|+++|.+|+.....+..++-+.|+++.|+.+|...+..++-.|+.++.|++...
T Consensus 232 ~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 433468999999999998 9999999999999999888877777766999999999999988889999999999999887
Q ss_pred ccHHH-HHHhCChHHHHHhhC-C--hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 549 DNCVR-MIEAGAVTALVGALG-H--EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 549 ~n~~~-iv~aG~v~~Lv~lL~-~--~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
+...+ ++..|++|.|..+|. . ..++.+|++++.|++. +.+..+++.++|- +|.|+.+|.++.-+.|..|++++.
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l-~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANL-IPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHccc-HHHHHHHHhccchHHHHHHHHHHH
Confidence 76655 568999999999996 2 3688999999999965 5678889999988 999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 624 ELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 624 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
|++..+..+....+++ .|++++|..++.-.+.+.-..+...+..+-+..+.
T Consensus 390 N~ts~g~~~qi~yLv~-~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVE-QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred hhcccCCHHHHHHHHH-cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999988788888888 99999999999766778888888777777766554
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.81 E-value=2.6e-19 Score=180.88 Aligned_cols=272 Identities=18% Similarity=0.188 Sum_probs=230.2
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~ 467 (715)
|.++.+|+.+. ....-.+.+|+|.|.+++......-+.++++|++|.++++|.++..++++.++++|.|++.++.. |.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 57889999995 44455688999999999988766667788999999999999999999999999999999998866 66
Q ss_pred hhhhhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCch---hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGL-TTEARENAAATLFSLSAVHE---YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~---~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
-+. ..|++++++.+|.+.. +.....++.++|.||+.... ....| +.++|.|.+|+...++++..+|+++|.-
T Consensus 194 ~vL-~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~D~evlvDA~WAiSY 269 (526)
T COG5064 194 YVL-QCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSRDPEVLVDACWAISY 269 (526)
T ss_pred HHH-hcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 666 9999999999998752 35778999999999987443 44444 5689999999999999999999999999
Q ss_pred hhcCCccHH-HHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 544 LSTHTDNCV-RMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 544 Ls~~~~n~~-~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
|+..+..+. .++..|..+.|+++|.+ ..++.-++....|+....+ ..+.+++.|. ++.+-.+|.+.....|..|+
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~-L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA-LKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc-HHHHHHHhcChhhhhhhhhh
Confidence 998766544 46789999999999974 4788889999999977554 5566789999 99999999988888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
+++.|+..++ .+..++++. ++++|+|+.++.+..-.+|+-|-|....
T Consensus 349 WTiSNITAGn-teqiqavid-~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 349 WTISNITAGN-TEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred eeecccccCC-HHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 456678888 9999999999999988888877765543
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.80 E-value=2.1e-18 Score=174.42 Aligned_cols=279 Identities=18% Similarity=0.177 Sum_probs=238.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCchhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
++++.++.+|.+++.+++.+++|+|.+++.+++..|..+.+.|++++|+.+|.+. +..+..++.+.|.||+...+...
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 4789999999999999999999999999999999999999999999999988775 45889999999999997654322
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.--.-.-++|.|.+++.+. +.|+...|++++.+|+..+..+..++-..|..+.||++|.+++...+.-|++.+.|+...
T Consensus 237 ~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 237 DWSNISQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred chHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 1111246899999999998 999999999999999998887777665589999999999998888899999999999987
Q ss_pred CccHHH-HHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 548 TDNCVR-MIEAGAVTALVGALGH--EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 548 ~~n~~~-iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
.+...+ ++.+|+++.+..+|++ +.++.++++.+.|+.. +.+..+++.+++- +|+|+.+|.......|..|++++.
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nl-iPpLi~lls~ae~k~kKEACWAis 394 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANL-IPPLIHLLSSAEYKIKKEACWAIS 394 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 765555 5689999999999974 4899999999999954 6778889999998 999999999888999999999999
Q ss_pred HHHhcCC--HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 624 ELCRSGG--ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 624 ~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|..+++. +.....++. .|++.+|..++.-.+.++-+.|...++.+-+
T Consensus 395 Natsgg~~~PD~iryLv~-qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 395 NATSGGLNRPDIIRYLVS-QGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhhccccCCchHHHHHHH-ccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 9987762 245667777 9999999999988877777777665555443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=2.2e-17 Score=189.24 Aligned_cols=278 Identities=19% Similarity=0.262 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.++.++.|++.|.+++.+....++..|.+|+.. .+|+..|.+.|+|+.|++++.+++.+++..++.+|+|||.+.+.|.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 467899999999999999999999999999965 7899999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC-ChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~-~~~~~~~A~~aL~nLs~ 546 (715)
.|+ ..|++|.|+.+|..+ ..+..+..+|.+||.+++.|..+.. .++||.|++++-++ +++....++.++.||+.
T Consensus 367 ~mV-~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 367 QMV-SLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHH-HCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 999 999999999999876 5667899999999999999999988 89999999987664 45566677788888888
Q ss_pred CCccHHHHHHhCChHHHHHhh-------------------------------------C---ChhHHHHHHHHHHHHh--
Q 038217 547 HTDNCVRMIEAGAVTALVGAL-------------------------------------G---HEGVAEEAAGALALIV-- 584 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL-------------------------------------~---~~~~~~~al~~L~~La-- 584 (715)
++.|...|++.|+++.|+... . +++...+++++|+||.
T Consensus 442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 442 NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 888877777766666554331 1 2244566777777775
Q ss_pred ------------------------------------------CCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHHHHH
Q 038217 585 ------------------------------------------RQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKENAVA 620 (715)
Q Consensus 585 ------------------------------------------~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~ 620 (715)
..++....+.+.|- ++.|+++++. .+++..-..+.
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl-i~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL-IPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh-HHHHHHHHHhhCchHHHHHHHHH
Confidence 33334444444444 5666666655 23555556666
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
+++.+-.+ +..+..+++..+++..|+.++++.++.+++.|...|-++.++.+
T Consensus 601 ~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 601 VFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 77777777 45677787878999999999999999999999999999887543
No 10
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.77 E-value=5.3e-18 Score=195.44 Aligned_cols=260 Identities=24% Similarity=0.279 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc---------C---CHHHHHHHHHHHhhhhcCc-hhhhhhhhhc
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST---------H---NPVAQENSVTAMLNLSIYD-KNKSRIMDEE 473 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s---------~---d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~ 473 (715)
.+.|+..|.+++++ +++|+.+.+.|++..+-.||.- . ...++.+|..+|.||...+ .||..+....
T Consensus 315 lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 35889999999975 8999999999999999887742 1 2468999999999999866 6799999789
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcC-Ccc
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATL-LRLGTPRGKKDAVTALFNLSTH-TDN 550 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~-~~n 550 (715)
|+++.+|..|.+. ..++.+..+.+|+|||+..+ +-+++.+..|.+..|+.. |+...+...+..+.+||||+.+ .+|
T Consensus 394 gfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 394 GFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 9999999999997 88999999999999999766 555555558999999987 4445568899999999999985 679
Q ss_pred HHHHHHh-CChHHHHHhhC-C-----hhHHHHHHHHHHHHhC----CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 551 CVRMIEA-GAVTALVGALG-H-----EGVAEEAAGALALIVR----QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 551 ~~~iv~a-G~v~~Lv~lL~-~-----~~~~~~al~~L~~La~----~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
|..|..- |++..||.+|. + -.+++.+-+||.|.++ +.+.|+.+.+++- +.+|++.|++.|-.+..+++
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC-Lq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC-LQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH-HHHHHHHhhhcceEEeecch
Confidence 9999875 99999999996 2 3899999999999876 3556655566555 99999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCH-HHHHHHHHHHHHHHH
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTK-RARRKAASLARVFQR 671 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~-~~k~~A~~lL~~l~~ 671 (715)
++||||...+ .+.++.++. .|.++.|.+|+++... .+...|++|.++|..
T Consensus 552 GTLWNLSAR~-p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 552 GTLWNLSARS-PEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhhhhhcCC-HHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 9999999998 567888888 9999999999999854 555666666666654
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.74 E-value=1.1e-18 Score=144.06 Aligned_cols=72 Identities=49% Similarity=0.949 Sum_probs=63.7
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
+|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++++...+++||..|+..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 588999999999999999999999999999999999988999999999999999999999999999999986
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.73 E-value=6.6e-16 Score=177.13 Aligned_cols=219 Identities=20% Similarity=0.173 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHH
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALAT 524 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~ 524 (715)
...+...|..+|+||+.+..+...|+ ..|.++.|+++|+++ +.++...++.+|..||...+|+..|++ .|+|+.|++
T Consensus 262 QeqLlrv~~~lLlNLAed~~ve~kM~-~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~k 338 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRVELKMV-NKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHH-hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHH
Confidence 44566688899999999999999999 999999999999998 999999999999999999999999999 999999999
Q ss_pred HhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHH
Q 038217 525 LLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLV 604 (715)
Q Consensus 525 LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv 604 (715)
++.+++......++.+|+|||.++++|.+|++.|+||.|+.+|.++.....++.+|.+|+..+++|..+...+. +|.++
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Tdc-Ip~L~ 417 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDC-IPQLM 417 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcch-HHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999999999998888876 99999
Q ss_pred HHhhcC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 605 GMMRCG-TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 605 ~lL~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+++.++ +++....+++++.||+.+ ....+.+.+ .|+++.|+.......+..- -.++|.++.+.
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~--~rnaqlm~~-g~gL~~L~~ra~~~~D~lL---lKlIRNiS~h~ 481 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALN--KRNAQLMCE-GNGLQSLMKRALKTRDPLL---LKLIRNISQHD 481 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcC--HHHHHHHHh-cCcHHHHHHHHHhcccHHH---HHHHHHHHhcC
Confidence 976664 555666778888999988 556667776 5778999988766554221 12555555443
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.72 E-value=1.6e-16 Score=177.95 Aligned_cols=290 Identities=21% Similarity=0.192 Sum_probs=232.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc---hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD---KNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~---~nk 466 (715)
..++..+.+|.+.++..|-.|+..|+.+++.+...|..+.+.|+|+.||.+|.+.+.++|.+|+++|.||.... +||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999997643 579
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-------C-------Chh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-------G-------TPR 532 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-------~-------~~~ 532 (715)
..|. +.++|+.++++|+...|.|++++.+++|+|||++|..|..|.. .++..|.+-+-. + +..
T Consensus 313 lai~-~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 313 LAIK-ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred hhhh-hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccce
Confidence 9999 9999999999999755999999999999999999988888876 678888766532 1 134
Q ss_pred HHHHHHHHHHHhhc-CCccHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCCcc-----h-HHHHhh-
Q 038217 533 GKKDAVTALFNLST-HTDNCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQPI-----G-AAAVGE- 595 (715)
Q Consensus 533 ~~~~A~~aL~nLs~-~~~n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~~e-----~-~~~i~~- 595 (715)
+..++..+|.|++. ..+.|.+|.+. |.|..|+..+. |...+++|+.+|.||+..-+ . +..+..
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 66799999999998 67789999876 88999999884 56889999999999975211 0 000000
Q ss_pred -------------------------------------hC-C----cHHHHHH----Hhhc-CChHHHHHHHHHHHHHHhc
Q 038217 596 -------------------------------------EE-M----AVTGLVG----MMRC-GTPRGKENAVAALLELCRS 628 (715)
Q Consensus 596 -------------------------------------~g-~----~I~~Lv~----lL~~-~s~~~ke~A~~~L~~L~~~ 628 (715)
.. | +=+.+|+ +|.. ..+.+.|+++++|-||+..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 00 0 1123333 3332 5788899999999999988
Q ss_pred CC---HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 038217 629 GG---ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENAALHFGGL 682 (715)
Q Consensus 629 ~~---~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 682 (715)
.. ...+..+...+.+.+.|++|++++++++.+.++.+|+.|+.....-..++++
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~ 606 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKY 606 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcc
Confidence 73 3355555343788999999999999999999999999998765443344444
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.6e-14 Score=145.04 Aligned_cols=283 Identities=16% Similarity=0.156 Sum_probs=233.7
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh----
Q 038217 393 ELLIQQLA--NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN---- 465 (715)
Q Consensus 393 ~~Lv~~L~--s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n---- 465 (715)
..++..|. +.+.+.....+..++.-|-.++.||..|++.|+.|.+...|.. +..++...+.++++-|..+++-
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 44555554 5677788889999999999999999999999999999976654 4456888899999999877763
Q ss_pred ------hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh----hHHH
Q 038217 466 ------KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP----RGKK 535 (715)
Q Consensus 466 ------k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~----~~~~ 535 (715)
...|+ ..|++..|++.|+.+.++.....+..+|..|+..++.+..|.+ .|++..|++++.+.+. ...+
T Consensus 228 g~ah~hAr~ia-~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k 305 (461)
T KOG4199|consen 228 GQAHGHARTIA-KEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAK 305 (461)
T ss_pred chhhHHHHHHH-HhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHH
Confidence 45677 8889999999999988899999999999999999999999999 9999999999987443 3567
Q ss_pred HHHHHHHHhhcCCccHHHHHHhCChHHHHHhh----CChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcC
Q 038217 536 DAVTALFNLSTHTDNCVRMIEAGAVTALVGAL----GHEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCG 610 (715)
Q Consensus 536 ~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL----~~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~ 610 (715)
.++..|..|+.+++++..+|+.|+.+.++.++ .|+.+...++.++.-||. .|++...+++.|+ -...|+-|+..
T Consensus 306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~-a~~avqAmkah 384 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA-ADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch-HHHHHHHHHhC
Confidence 88999999999999999999999999999987 278999999999999986 6888889999998 78888888864
Q ss_pred --ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 038217 611 --TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENAALHFGG 681 (715)
Q Consensus 611 --s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 681 (715)
....|.+|+.++.|+..++ .+.+..+.. .+++.|+.......+.....|...||-|.=+-.....|+|
T Consensus 385 P~~a~vQrnac~~IRNiv~rs-~~~~~~~l~--~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRS-AENRTILLA--NGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-hhccchHHh--ccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhcc
Confidence 4567999999999999997 444555554 4588888888888888888888888776433222234555
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.61 E-value=5.7e-14 Score=157.73 Aligned_cols=281 Identities=18% Similarity=0.182 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh--hHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKE--NRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n 465 (715)
-+.|+.||..|.+...++|.+|+++|+||.+.+.. |+..|.+.|+|+.++++|+. .|.++++....+|+||+.++.-
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 36889999999999999999999999999988766 99999999999999999987 8999999999999999999887
Q ss_pred hhhhhhhcCcHHHHHHHHhcC---C----------CHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhc---
Q 038217 466 KSRIMDEEGCLGSIVKVLRFG---L----------TTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRL--- 528 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~---~----------~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~--- 528 (715)
|..|+ ..++..|..-+-.. + +.++-.+++++|+|++. ..+.+.++.+..|.|..|+..++.
T Consensus 354 K~~ii--~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 354 KMLII--TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHH--HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 88887 55677766654321 1 14566788899999987 666788888877888888876651
Q ss_pred ---CChh-------------------------------------------------------------------------
Q 038217 529 ---GTPR------------------------------------------------------------------------- 532 (715)
Q Consensus 529 ---~~~~------------------------------------------------------------------------- 532 (715)
-+..
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 1112
Q ss_pred -----------------------HHHHHHHHHHHhhcCCc-----cHHHH-HHhCChHHHHHhhC--ChhHHHHHHHHHH
Q 038217 533 -----------------------GKKDAVTALFNLSTHTD-----NCVRM-IEAGAVTALVGALG--HEGVAEEAAGALA 581 (715)
Q Consensus 533 -----------------------~~~~A~~aL~nLs~~~~-----n~~~i-v~aG~v~~Lv~lL~--~~~~~~~al~~L~ 581 (715)
+.+.++.+|-||+...- .+..+ .+..+.++|+.+|. |+.++..+.++|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 33445556666654321 23333 44567888999996 6789999999999
Q ss_pred HHhCCcchHHHHhhhCCcHHHHHHHhhcCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-
Q 038217 582 LIVRQPIGAAAVGEEEMAVTGLVGMMRCGT------PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG- 654 (715)
Q Consensus 582 ~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~- 654 (715)
||+.+..++..|. .++ ++-||+.|..+. .+.--.++.+|+++...+ ......+.. .+.++.|+.|..+.
T Consensus 592 Nls~d~rnk~lig-k~a-~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~-~~nAkdl~~-~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 592 NLSRDIRNKELIG-KYA-IPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN-VLNAKDLLE-IKGIPKLRLISKSQH 667 (717)
T ss_pred hhccCchhhhhhh-cch-HHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh-HHHHHHHHh-ccChHHHHHHhcccC
Confidence 9999999999988 466 899999998742 577788889999999776 456677877 88999999999887
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 038217 655 TKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 655 ~~~~k~~A~~lL~~l~~~~~~ 675 (715)
+++.-+.|..+|..|+.+.+.
T Consensus 668 S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 668 SPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999998776
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.55 E-value=6.6e-13 Score=136.13 Aligned_cols=234 Identities=19% Similarity=0.228 Sum_probs=188.7
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.++.|+..|+ +.++..+..|+..+.+.+. .+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 46789999998 5689999999999999885 589999999999999999999999999999999999999999999988
Q ss_pred hhhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
|- . .++.+++.+.+ ..+.+.+..++.+|.+|+..+++...+. +.++.++.+|..|+..++..++++|.|||.+
T Consensus 91 Ik-~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 91 IK-M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HH-H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 76 3 57777776544 3467899999999999999988888774 4799999999999999999999999999999
Q ss_pred CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCC--cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQ--PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~--~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+...++.++++..++.++. +.++...++.++.|+..+ +++....-.... -..|.-+++ ++ ... +.-|
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~-~~~L~~~~~-e~---~~~-~~~l 238 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFS-EDSLFSLFG-ES---SQL-AKKL 238 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCC-chhHHHHHc-cH---HHH-HHHH
Confidence 999999999999999999995 458899999999999764 233333323333 455654443 21 122 2334
Q ss_pred HHHHhcCCHHHHHH
Q 038217 623 LELCRSGGASATER 636 (715)
Q Consensus 623 ~~L~~~~~~~~~~~ 636 (715)
..|..+.+++++.+
T Consensus 239 ~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 239 QALANHPDPEVKEQ 252 (254)
T ss_pred HHHHcCCCHHHhhh
Confidence 45556655555544
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.53 E-value=7.9e-15 Score=117.94 Aligned_cols=63 Identities=52% Similarity=1.053 Sum_probs=60.3
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHH
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 354 (715)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++++...++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999988 78999999999999999999999999987
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=7.1e-11 Score=120.33 Aligned_cols=263 Identities=16% Similarity=0.196 Sum_probs=211.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhh-cCchhhhhhhhhcCcH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLS-IYDKNKSRIMDEEGCL 476 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs-~~~~nk~~I~~~~g~i 476 (715)
.+++.....+++..|..+...-|+ +.++.+...++.+|.. ++.++-...+..+..-+ .++.||..++ +.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m-~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFM-ELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHH-HhhHH
Confidence 367777888999999888865554 5577888999999864 56777777777777665 4778999999 99999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCch----------hHHHHhcccCcHHHHHHHhhcC-ChhHHHHHHHHHHHhh
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHE----------YKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLS 545 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----------~~~~I~~~~g~I~~Lv~LL~~~-~~~~~~~A~~aL~nLs 545 (715)
+.+...|.......+...+.++++.|..+|+ +...|.. .|+...|++.++.+ ++.....+..+|..|+
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999888653245678888999999887664 4455666 67899999999874 4788899999999999
Q ss_pred cCCccHHHHHHhCChHHHHHhhCC------hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHH
Q 038217 546 THTDNCVRMIEAGAVTALVGALGH------EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKEN 617 (715)
Q Consensus 546 ~~~~n~~~iv~aG~v~~Lv~lL~~------~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~ 617 (715)
..++.+..+++.|++..|+.++.| ..+...++..|..|+.++..+..|++.|| .+.++.++.. .+|.+-+.
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg-~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG-LDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC-hHHHHHHHHHcCCChHHHHH
Confidence 999999999999999999999963 14667899999999999999999999999 8999996554 68999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-C-CHHHHHHHHHHHHHHHH
Q 038217 618 AVAALLELCRSGGASATERVLKAPALVGLLQALLFT-G-TKRARRKAASLARVFQR 671 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~-~~~~k~~A~~lL~~l~~ 671 (715)
++.++.-||-..++... ..++ .|+-...++-++. . ....++.|.+++|.+-.
T Consensus 350 ~~a~i~~l~LR~pdhsa-~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSA-KAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHhcCcchHH-HHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999876654 4555 6766666665554 4 55668999988888764
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.42 E-value=1.4e-11 Score=126.37 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=169.7
Q ss_pred HHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 428 IAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 428 i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
+.+.+-++.|+.+|+. .|+.+++.|+.++.|.+.++.++..|. +.|+++.+..+|..+ ++.+++.|+.+|.+||.+.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir-~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIR-DLGGISLIGSLLNDP-NPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHH-HcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCCh
Confidence 3567788999999985 789999999999999999999999999 999999999999998 9999999999999999999
Q ss_pred hhHHHHhcccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHH
Q 038217 507 EYKKKIADESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALAL 582 (715)
Q Consensus 507 ~~~~~I~~~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~ 582 (715)
+++..|-. .|+.+++...+. +..++..++.+|.||+..++.+..+. ++++.++.+|. +..++..++.+|.|
T Consensus 86 en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99998844 688888766554 46888999999999998877766664 47999999995 67899999999999
Q ss_pred HhCCcchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHHHhcC
Q 038217 583 IVRQPIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLELCRSG 629 (715)
Q Consensus 583 La~~~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~ 629 (715)
|+.++.....++.+.+ +..++.++... +.+.-..++...-++..+-
T Consensus 161 LS~np~~~~~Ll~~q~-~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 161 LSENPDMTRELLSAQV-LSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hccCHHHHHHHHhccc-hhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9999999999999888 89999998874 5677888888888886654
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.37 E-value=2.6e-10 Score=129.41 Aligned_cols=275 Identities=12% Similarity=0.146 Sum_probs=219.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
...+.|...|.+.++.++.-++..|++++.++......+.+.+.++.++.+|.++|..+...|+.+|.+++.++.+-..+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 46688899999999999999999999999887776777888999999999999999999999999999999998887788
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ..+.+..|..++... +...|-.+..++.+++...+.-..++...|.++.+++.+.+++.-++.+|+.+|..|+..+.
T Consensus 157 ~-~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 157 F-DSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred h-CcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 8 788899999999886 77889999999999987766555555558999999999998888899999999999999999
Q ss_pred cHHHHHHhCChHHHHHhhC----Ch----hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG----HE----GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~----~~----~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
+...+.+.|+++.|+.++. |+ -+.-..+....+++.. .....+...+.++..|.+++.+.++..+..|..+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDT 313 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 9999999999999999995 33 1233444666677664 2222233334445666777888899999999999
Q ss_pred HHHHHhcCCHHHHHHH-HhcCC----cHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERV-LKAPA----LVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l-~~~~g----~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
|..+|+. .+....+ ....+ ++........+++...|-++-..+..+
T Consensus 314 lg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 314 LGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999977 4445555 33122 455555566677777777776555544
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.2e-10 Score=117.02 Aligned_cols=275 Identities=16% Similarity=0.236 Sum_probs=198.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+..|..||..|.-++.+...-...-|..|+-- .+|+..+.+.|.|+.|+++....+++++...+..|+||+.+..++..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 45678888888877777777788888888865 69999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nLs~~ 547 (715)
++ ..|.+|.++.+|.+. .-..-|+..|..+|.+++.+..+.- ..+|+.|.+.+-++.. ++-..-+..--|||.+
T Consensus 382 Mv-~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 382 MV-NGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred Hh-hccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 99 999999999999875 3456688999999999999998887 8999999988766543 2222222222366655
Q ss_pred CccHHHHHHhCChH-------------------------------------HHHHhhC---ChhHHHHHHHHHHHHhCCc
Q 038217 548 TDNCVRMIEAGAVT-------------------------------------ALVGALG---HEGVAEEAAGALALIVRQP 587 (715)
Q Consensus 548 ~~n~~~iv~aG~v~-------------------------------------~Lv~lL~---~~~~~~~al~~L~~La~~~ 587 (715)
..|.+.+++-.++. .|...++ ++....+|+++|+||.-.+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d 536 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD 536 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence 55444443332222 2333332 2355677888888887322
Q ss_pred chHHH--------------------------------------------HhhhCCcHHHHHHHhhcC--ChHHHHHHHHH
Q 038217 588 IGAAA--------------------------------------------VGEEEMAVTGLVGMMRCG--TPRGKENAVAA 621 (715)
Q Consensus 588 e~~~~--------------------------------------------i~~~g~~I~~Lv~lL~~~--s~~~ke~A~~~ 621 (715)
-.-.. +..++. |+.|+++|+.. +++..-.-+.+
T Consensus 537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~-i~tlieLL~a~QeDDEfV~QiiyV 615 (791)
T KOG1222|consen 537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL-IDTLIELLQACQEDDEFVVQIIYV 615 (791)
T ss_pred CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc-HHHHHHHHHhhcccchHHHHHHHH
Confidence 22222 223333 66777777652 34444445555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
...+..+ +..+..++++...-..|..|+++.+..+++-+-..|-++..+
T Consensus 616 F~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 616 FLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 5566666 455667777666778899999999999988888777777654
No 22
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.6e-11 Score=117.62 Aligned_cols=239 Identities=19% Similarity=0.264 Sum_probs=155.4
Q ss_pred hHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhcccc--------chhHHHHhhhHHHHHHHHHHHHHHHHhccCCC
Q 038217 72 LLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQS--------SKLWLLLQNHSISGHFHDLNQEISTLLDVFPA 143 (715)
Q Consensus 72 lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~--------Sklyll~~~~~i~~~f~~~~~~l~~~L~~lp~ 143 (715)
.-++|--+..+.+--...++|-|. ++.+....+||+.. =+.|++-++-.-+..|-.....|.+++++.-.
T Consensus 33 y~raI~~nP~~~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 33 YSRAICINPTVASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHhcCCCcchhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 334444332233345678888887 99999999999865 12245555555555555899999999999988
Q ss_pred CcccchHHHHHHHHHHHHHHHhhh--ccCCchhHHHHHHHHHhhhhhccCCCCChHHHHHHhhhcCCCCCHHHHHHHHHH
Q 038217 144 DDIELSEDVREQIDLMQRQARNAK--LHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEF 221 (715)
Q Consensus 144 ~~l~~s~ev~e~v~~~~~q~~~~~--~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~~l~~~~~~~l~l~~~~~~~~E~~~ 221 (715)
..+...++|-+++.+++.+-+... .|+ .++.++.+.+.+++.. ++ ..+.+.+++ . | -+...
T Consensus 111 ~~~~~~~di~~~L~~ak~~~w~v~e~~Ri-~Q~~El~~yl~slie~-~~--~~~~s~~~~--N---~-~sde~------- 173 (284)
T KOG4642|consen 111 QPFTFGDDIPKALRDAKKKRWEVSEEKRI-RQELELHSYLESLIEG-DR--ERELSEWQE--N---G-ESDEH------- 173 (284)
T ss_pred CCCCCcchHHHHHHHHHhCccchhHHHHH-HHHhhHHHHHHHHhcc-ch--hhHHHHHHH--c---C-CChHH-------
Confidence 888899999998877665544222 111 3455566666665531 11 111111111 1 1 01111
Q ss_pred HHHHHHhhcCCCccchhhHhhHHHHHhhhhccccccccchhhhccccccccccccchhhhcccCCCCCCCCcCccCcccc
Q 038217 222 LEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLM 301 (715)
Q Consensus 222 l~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpIc~~lm 301 (715)
++.+-.....+-+.....|+.| |...++.. ...++|+.++|.|+.++|
T Consensus 174 ~k~~q~~~~~~~d~~~kel~el-----------f~~v~e~r---------------------k~rEvpd~lcgkIt~el~ 221 (284)
T KOG4642|consen 174 LKTMQVPIEQDHDHTTKELSEL-----------FSKVDEKR---------------------KKREVPDYLCGKITLELM 221 (284)
T ss_pred HhhhcchhHHHHHHHHHHHHHH-----------HHHHHHHh---------------------ccccccchhhhhhhHHhh
Confidence 1111111111111112233333 22222111 336789999999999999
Q ss_pred cCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 302 RDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 302 ~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
++||+.++|.||.|.-|.++++.-.+..|+++.+++...++||..|+..|..|...|+|.
T Consensus 222 ~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 222 REPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 999999999999999999999987788999999999999999999999999999999985
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.24 E-value=5.4e-10 Score=117.24 Aligned_cols=279 Identities=13% Similarity=0.116 Sum_probs=215.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc----CC---HHHHHHHHHHHhhhhcC
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST----HN---PVAQENSVTAMLNLSIY 462 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~d---~~~~~~A~~aL~nLs~~ 462 (715)
+.++.|....+|.+.++-.+..+.|.+.|.+|.++|..+.+.||-..++++|+. ++ .+.-.-+...|.|...+
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 366777777778889999999999999999999999999999998888888875 22 35556677888888776
Q ss_pred chh-hhhhhhhcCcHHHHHHHHhcC---------------------------------------------CCHHHHHHHH
Q 038217 463 DKN-KSRIMDEEGCLGSIVKVLRFG---------------------------------------------LTTEARENAA 496 (715)
Q Consensus 463 ~~n-k~~I~~~~g~i~~Lv~lL~~~---------------------------------------------~~~e~~~~Aa 496 (715)
.+. +.+.+ +.|+++.|+..+.=+ ..++.++...
T Consensus 167 ~~~l~aq~~-~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 167 SRELRAQVA-DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred cHHHHHHHH-hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 644 88888 899999777554211 1234455666
Q ss_pred HHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CCh-------hHHHHHHHHHHHhhcCCccHHHHHHhC-ChHHHHHhh
Q 038217 497 ATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTP-------RGKKDAVTALFNLSTHTDNCVRMIEAG-AVTALVGAL 567 (715)
Q Consensus 497 ~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~-------~~~~~A~~aL~nLs~~~~n~~~iv~aG-~v~~Lv~lL 567 (715)
.+|...+.++..|-.+++ .|.+..++++++. .+. ...+.++....-|...++.-.++...| .++.++.-+
T Consensus 246 eila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 777777778888888887 8899999999876 221 223444444444555555555555555 666777777
Q ss_pred C--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 038217 568 G--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-----GTPRGKENAVAALLELCRSGGASATERVLKA 640 (715)
Q Consensus 568 ~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 640 (715)
. |..++..+.-++.|+++.++....+++.+. +..|++++.. |+-+.+..++++|.|+.-.-+ ....+..
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~-~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~- 400 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQKDF-LNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAP- 400 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHHHHH-HHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccc-
Confidence 4 557888888899999999999999999888 9999996554 677889999999999998753 3567777
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 641 PALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 641 ~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
+|+++.++..++...|.+..|--..+|++++.++
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 9999999999999999999999999999998766
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=7e-11 Score=137.77 Aligned_cols=225 Identities=20% Similarity=0.153 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hh-hhhhhhhcCcHHHHHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KN-KSRIMDEEGCLGSIVK 481 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~n-k~~I~~~~g~i~~Lv~ 481 (715)
..++-|...|.||.+.+..|+..+... |+++.+|.-|.+...+++..-..+|.||+... .| |+.+- +.|-+..|+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr-E~GsVtaLa~ 444 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR-ETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH-hhhhHHHHHH
Confidence 457788899999999999999988764 99999999999988889888899999999854 34 66666 8999999988
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcC----ChhHHHHHHHHHHHhhcC----CccHH
Q 038217 482 VLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLG----TPRGKKDAVTALFNLSTH----TDNCV 552 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~----~~n~~ 552 (715)
.--...........+.+|||||.+. +||..|++..|++..||.+|.-. .....+.|-.+|.|.+++ .+-|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 7544435677888999999998755 69999999899999999999532 246678899999998764 44677
Q ss_pred HHHHhCChHHHHHhhCCh--hHHHHHHHHHHHH-hCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 553 RMIEAGAVTALVGALGHE--GVAEEAAGALALI-VRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~L-a~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
.+.+.+++..|++.|+.. -++.++++.|+|| +.+++..+.+++.|+ |+.|-.++++....+-+-++++|.||-.+.
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gA-v~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGA-VPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhccc-HHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 778999999999999744 6789999999999 558999999999999 999999999999899999999999999886
Q ss_pred CH
Q 038217 630 GA 631 (715)
Q Consensus 630 ~~ 631 (715)
+.
T Consensus 604 PA 605 (2195)
T KOG2122|consen 604 PA 605 (2195)
T ss_pred ch
Confidence 53
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.10 E-value=1.3e-09 Score=98.52 Aligned_cols=117 Identities=31% Similarity=0.365 Sum_probs=105.6
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 038217 427 FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 427 ~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
.+++.|+++.|+.+|.+++..++..|+.+|.+++.+ +..+..+. ..|+++.++.+|..+ +..++..|+++|.+|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKSE-DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccC
Confidence 367889999999999999999999999999999998 57788888 889999999999997 999999999999999988
Q ss_pred ch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 506 HE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 506 ~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
.. ....+.. .|+++.|++++..++...++.|+.+|.||+.
T Consensus 80 ~~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 75 4555555 8999999999999889999999999999873
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.10 E-value=3.2e-11 Score=87.86 Aligned_cols=39 Identities=38% Similarity=0.842 Sum_probs=31.4
Q ss_pred CccCcccccCceeCCCccHhhHHHHHHHHHhCC---CCCCCC
Q 038217 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGH---RTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~---~~CP~c 332 (715)
||||+++|.|||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 469987
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.06 E-value=6.5e-08 Score=110.03 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=211.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhc
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~ 473 (715)
.+...|++.+.+....++..|..+.... .-... ..+..+.|...|.++++.++..++..|.++..+++....++.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 3777888777777777888888877542 22222 55788999999999999999999999999998887755555489
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc-cHH
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NCV 552 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~-n~~ 552 (715)
+.++.++..|..+ +.++...|+.+|..|+..+.+...+.. .+.+..|..++...+...+-.+..++.+++...+ ...
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999998 999999999999999999888888877 7889999999988777788889999999987554 556
Q ss_pred HHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC--ChHH----HHHHHHHHHH
Q 038217 553 RMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG--TPRG----KENAVAALLE 624 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~----ke~A~~~L~~ 624 (715)
.+...|.++.++..|. |.-++..++.+|..|+..++|..-+.+.|. ++.|+.++... +++. --..+....+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi-~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGI-FDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCH-HHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 6677899999999996 346788999999999999999999999988 99999998763 2311 1112233445
Q ss_pred HHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 625 LCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 625 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
++...+..+.... ..++..|..+..++++..+..|-..+-.+....++
T Consensus 276 la~~~~~~v~~~~---p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 276 LARVSPQEVLELY---PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHhcChHHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 5554333332211 34567777888888888888888777777654433
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=1.2e-10 Score=111.87 Aligned_cols=61 Identities=30% Similarity=0.513 Sum_probs=53.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh---------------CCCCCCCCccccccCCCCccHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE---------------GHRTCPKTGQMLVHDRLVPNRA 346 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~---------------~~~~CP~c~~~l~~~~l~pn~~ 346 (715)
.+..++|.||||++.+.|||+++|||.||+.||.+|+.. +...||.|+.++....+.|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 566778999999999999999999999999999999853 2468999999999888888654
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=2.8e-10 Score=122.24 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 358 (715)
..+.+.+.|+||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++++.|....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 568889999999999999999999999999999999987 568999999998888999999999999887543
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.01 E-value=5.2e-09 Score=94.60 Aligned_cols=114 Identities=21% Similarity=0.312 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~ 467 (715)
.+.++.|+..|.+++++.+..++..|.+++..+++.+..+.+.|++|.|+.+|.++++.++..|+++|.|++.+... +.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 35789999999999999999999999999998899999999999999999999999999999999999999988744 56
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
.+. ..|+++.++++|..+ +.++++.|+++|.+|+.
T Consensus 86 ~~~-~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVL-EAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHH-HCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 666 899999999999998 89999999999999863
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=5.6e-09 Score=110.83 Aligned_cols=180 Identities=21% Similarity=0.202 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHH
Q 038217 446 PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATL 525 (715)
Q Consensus 446 ~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~L 525 (715)
..+...|+..|+||+.+-..-..+. ....+..||+.|... +.+........|..||..++|+..+++ .|.|+.|+++
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMr-rkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~kl 353 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMR-RKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH-HHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHh
Confidence 4455678999999999888778888 889999999999998 889999999999999999999999999 9999999999
Q ss_pred hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHH
Q 038217 526 LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 526 L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~ 605 (715)
+...+++.++..+..|+|||.+..++.+|+..|.+|.|+.+|.++.-..-|+.+|..++.++..+..+..... |+.+.+
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdc-i~~lmk 432 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDC-IKLLMK 432 (791)
T ss_pred cCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999998665556688899999776667666666666 999999
Q ss_pred HhhcCChHHHHHHHHH-HHHHHhcC
Q 038217 606 MMRCGTPRGKENAVAA-LLELCRSG 629 (715)
Q Consensus 606 lL~~~s~~~ke~A~~~-L~~L~~~~ 629 (715)
.+-+++......++-+ -.|||.+.
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhcc
Confidence 7766654444444433 36788763
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.85 E-value=1e-07 Score=102.00 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=163.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc------CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA------GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~------G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
|++.+ +.+.+.....+.-|..+..+++.....+... ....+++++|.++|.-++..|+.+|..|......+..
T Consensus 63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~ 141 (312)
T PF03224_consen 63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE 141 (312)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 33444 5788889999999999998888777777652 2578888999999999999999999999877765554
Q ss_pred hhhhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh-----hcC--ChhHHHHHH
Q 038217 469 IMDEEGCLGSIVKVLRFGL---TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL-----RLG--TPRGKKDAV 538 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL-----~~~--~~~~~~~A~ 538 (715)
-. ..+.++.++..|++.. +.+.+..|+.+|.+|...+.+|..+.+ .|+++.|+.++ ..+ +.+..=.++
T Consensus 142 ~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 142 KL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp HH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 43 3677888998887632 345668999999999999999999999 99999999999 222 246777999
Q ss_pred HHHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcc--hHHHHhhhCCcHHHHHHHhhc---C
Q 038217 539 TALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPI--GAAAVGEEEMAVTGLVGMMRC---G 610 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e--~~~~i~~~g~~I~~Lv~lL~~---~ 610 (715)
-++|-|+.+++....+...+.|+.|+.+++ .+.+..-++++|.||...+. ....++..|+ ..+++.|.. +
T Consensus 220 l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~--l~~l~~L~~rk~~ 297 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL--LKTLQNLSERKWS 297 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H--HHHHHHHHSS--S
T ss_pred HHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH--HHHHHHHhcCCCC
Confidence 999999999999999999999999999996 56999999999999988655 7788888776 455554443 3
Q ss_pred ChHHHH
Q 038217 611 TPRGKE 616 (715)
Q Consensus 611 s~~~ke 616 (715)
+++..+
T Consensus 298 Dedl~e 303 (312)
T PF03224_consen 298 DEDLTE 303 (312)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 444443
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.83 E-value=1.5e-09 Score=109.88 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=63.6
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~ 357 (715)
.+-+-++|-||.++|.-|++++||||||..||..++.. ++.||.|..++....+..|+.+..+|+.|..-
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999988 89999999999999999999999999877543
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.82 E-value=1.5e-07 Score=100.73 Aligned_cols=245 Identities=19% Similarity=0.118 Sum_probs=169.3
Q ss_pred HHhhChhhHHHHHHc---CChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhh------cCcHHHHHHHHhc
Q 038217 417 LAKTGKENRAFIAKA---GAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDE------EGCLGSIVKVLRF 485 (715)
Q Consensus 417 La~~~~~~r~~i~~~---G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~------~g~i~~Lv~lL~~ 485 (715)
+-+...+.|..+.+. +....++.+|+. ++.++..+.+..+..+..++..+..+... .....+++.++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~ 116 (312)
T PF03224_consen 37 LDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR 116 (312)
T ss_dssp HHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-
T ss_pred HHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC
Confidence 333334445445543 346677777764 58899999999999987766554433312 2368899998888
Q ss_pred CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC----ChhHHHHHHHHHHHhhcCCccHHHHHHhCChH
Q 038217 486 GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG----TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVT 561 (715)
Q Consensus 486 ~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~ 561 (715)
+ +.-....|+.+|..|............ .+.++.+++++.+. +.+....|+.+|.+|...++.|..+.+.|+++
T Consensus 117 ~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 117 N-DSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVS 194 (312)
T ss_dssp S-SHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHH
Confidence 8 999999999999999887776655544 56788888888752 23456889999999999999999999999999
Q ss_pred HHHHhh------CC---hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCH
Q 038217 562 ALVGAL------GH---EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 562 ~Lv~lL------~~---~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
.++.+| ++ ..++-+++-+++.|+.+++....+...+. |+.|+++++. ...++.+-++++|.|+......
T Consensus 195 ~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~-i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 195 PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYL-IPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSH-HHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccch-HHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 999999 22 37888999999999999999999999885 9999999987 5688899999999999988765
Q ss_pred HHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHH
Q 038217 632 SATERVLKAPALVGLLQALLFTG--TKRARRKAASL 665 (715)
Q Consensus 632 ~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~l 665 (715)
.....++. .|+.+.|..|.... ++...+--..+
T Consensus 274 ~~~~~mv~-~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 274 SNIELMVL-CGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp THHHHHHH-H-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHH-ccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 57777777 77777776666544 66666554443
No 35
>PRK09687 putative lyase; Provisional
Probab=98.77 E-value=8.1e-07 Score=93.23 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..-.+..|+..|.+.+..++..|+..|..+-. ..+++.+..++.+.++.++..|+.+|..|......
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 33456677777777777777777776654431 23445556666666777777777777665432211
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH---------------------------HHHhcccCcHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK---------------------------KKIADESGAVE 520 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~---------------------------~~I~~~~g~I~ 520 (715)
...+++.|..++....+..+|..|+.+|.++....... ..++. ..+++
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~ 162 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIP 162 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHH
Confidence 12344555555333335666666666666653211100 01111 33455
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCC
Q 038217 521 ALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEM 598 (715)
Q Consensus 521 ~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~ 598 (715)
.|+.+|.+.++.++..|+.+|.++..... .+++.|+.+|. +..++..|+..|..+-. ..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~a 224 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRV 224 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhH
Confidence 55555555555555555555554411110 23444555554 33555555555544311 122
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHH
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLAR 667 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~ 667 (715)
|+.|++.+.++. .+..|+.+|..+.. .-.++.|..++. +.+++++++|.+.++
T Consensus 225 -v~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 -LSVLIKELKKGT--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -HHHHHHHHcCCc--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 566666665443 23334444333221 114777888886 668888888877664
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=3.6e-09 Score=76.08 Aligned_cols=38 Identities=37% Similarity=0.910 Sum_probs=33.4
Q ss_pred CccCcccccCce-eCCCccHhhHHHHHHHHHhCCCCCCCC
Q 038217 294 CPIMLDLMRDPV-IISTGQTYDRRSIARWMEEGHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv-~~~cghtfcr~cI~~w~~~~~~~CP~c 332 (715)
||||.+.+.+|+ .++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 899999999995 6799999999999999998 7899987
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.73 E-value=2.6e-09 Score=82.91 Aligned_cols=60 Identities=20% Similarity=0.408 Sum_probs=34.9
Q ss_pred CCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHH
Q 038217 289 PKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLI 351 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i 351 (715)
++-++|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|+.|....++.-|..+.++|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3467999999999999976 99999999999875543 599999999999999999999886
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=7.3e-06 Score=92.41 Aligned_cols=258 Identities=16% Similarity=0.204 Sum_probs=197.5
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCch---
Q 038217 391 TAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDK--- 464 (715)
Q Consensus 391 ~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~--- 464 (715)
+|+.|+.++.+ .-.+.|+.|+..|..+++ .+|..+. +-|+++|+..|.. .|+++...++.+++++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 89999999974 467889999999999995 5666655 5678999999976 589999999999999977663
Q ss_pred ---h-h----------hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhc
Q 038217 465 ---N-K----------SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 465 ---n-k----------~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
+ + +.++...+-|..++..+... +.-+|..+...|.+|-... +.+..+...+-+|..|+.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 2 13333678899999999887 8899999999999885533 4677777768999999999998
Q ss_pred CChhHHHHHHHHHHHhhcCCccHHHHHHh-CChHHHHHhhC-----Ch-hHHHHHHHHHHHHhCCcchHHHHhhhCCcHH
Q 038217 529 GTPRGKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGALG-----HE-GVAEEAAGALALIVRQPIGAAAVGEEEMAVT 601 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~v~~Lv~lL~-----~~-~~~~~al~~L~~La~~~e~~~~i~~~g~~I~ 601 (715)
..+..+-+|+-.|..|+.+..+..++|.. +++..|..++. |+ -+++.|+..|-||-.....-+.+...|+.||
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 77888999999999999998888888765 89999999995 44 5789999999999886665555656666699
Q ss_pred HHHHHhhc---CChHH----------HHHHHHHHHHHHhcCC-----HHHHHHHHhcCCcHHHHHHHhhcC
Q 038217 602 GLVGMMRC---GTPRG----------KENAVAALLELCRSGG-----ASATERVLKAPALVGLLQALLFTG 654 (715)
Q Consensus 602 ~Lv~lL~~---~s~~~----------ke~A~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~s~ 654 (715)
.|..+|.. |+.+. -..|+.++..+...+. ..+++++.. .+++..|..++-+.
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHP 327 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCC
Confidence 99987765 33211 2233344444444331 124456666 88899998877554
No 39
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-06 Score=92.73 Aligned_cols=274 Identities=13% Similarity=0.075 Sum_probs=195.5
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CC-------HHHHHHHHHHHhhhhcC
Q 038217 392 AELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HN-------PVAQENSVTAMLNLSIY 462 (715)
Q Consensus 392 i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d-------~~~~~~A~~aL~nLs~~ 462 (715)
+..+++.|.+. .++...-....+...+ +|+..+-.+++.|.++.++.++.. ++ ...-..+.....-|...
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 34555666543 3333333444444444 788999999999999999999975 22 12223344444445555
Q ss_pred chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-----CChhHHHHH
Q 038217 463 DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-----GTPRGKKDA 537 (715)
Q Consensus 463 ~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-----~~~~~~~~A 537 (715)
++.-..+......+..+++.+.+. +......++-+|.|++..|+++..+++ .|.+..|+.+|.. |+.+.+..+
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 665444541333899999999998 889999999999999999999999999 9999999999853 567888999
Q ss_pred HHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChH-
Q 038217 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPR- 613 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~- 613 (715)
+.+|+||.....||..++.+|++..++..++ .+.++..-++.|+.+....+ ...++.+....+..|++.-++.+-.
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 9999999999999999999999999999996 67899999999998865444 5556666666677888877764322
Q ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGG-ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.--.+...|.-+.+++. ..+...+-+ .|++..++.+.....-.-+.-|.-.|-.+
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 33344455555555531 234555666 77888888887766555555554433333
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.65 E-value=5.6e-06 Score=90.75 Aligned_cols=272 Identities=12% Similarity=0.052 Sum_probs=191.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhhhhhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNKSRIMDE 472 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk~~I~~~ 472 (715)
.++..|..++.-.+..|...|..+...++.+.......-....|...|++. +...+.-|+.+|..|...+..|..+. +
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~-~ 183 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV-L 183 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH-H
Confidence 344677888888899999999888865443311111111334555666653 57888889999999999999999998 8
Q ss_pred cCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhhcCC--
Q 038217 473 EGCLGSIVKVLRFGL-TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLSTHT-- 548 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~-- 548 (715)
.++++.|+.+|+... +...+.+++-+++-||-.++....... .+.|+.|+++++... +.+..-++.+|.||....
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 889999999998753 568899999999999998886666655 899999999998754 678889999999998743
Q ss_pred -----ccHHHHHHhCChHHHHHhhC----ChhHHHHHHHHH-------HHHhCC------------------------cc
Q 038217 549 -----DNCVRMIEAGAVTALVGALG----HEGVAEEAAGAL-------ALIVRQ------------------------PI 588 (715)
Q Consensus 549 -----~n~~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L-------~~La~~------------------------~e 588 (715)
.....|+..|..+.+-.+.. |+++.+..-.+- ..+++. .+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24456777776554444432 555433222111 222211 13
Q ss_pred hHHHHhhhCC-cHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 038217 589 GAAAVGEEEM-AVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666 (715)
Q Consensus 589 ~~~~i~~~g~-~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL 666 (715)
+...+-+.+. .+..|+++|.. .++.....|+.=+..++++-| ..+..+.+ .|+=..+++|+.+.++.++..|-..+
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3444433332 46788888853 567777777777888888863 34444444 89999999999999999999987665
Q ss_pred HHH
Q 038217 667 RVF 669 (715)
Q Consensus 667 ~~l 669 (715)
+.|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 544
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.5e-06 Score=96.63 Aligned_cols=255 Identities=18% Similarity=0.161 Sum_probs=192.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHH-hhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLA-KTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La-~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+..|+..|... ++..|.+|+.+|..+. ..|.+.-..|.-.-++|.|+.+|+. .+.+++.+|+.+|.+|+..- ...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 567888888854 8888999999987644 4444444444455689999999998 57999999999999998754 556
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..++ +.++||.|+.-|..=...++-+.++.+|..+|..+ -..|.+ .|++-..+..|.=-+..++..|+.+..|.|.
T Consensus 248 a~vV-~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVV-DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heee-cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777 89999999998876547899999999999998743 455666 7999988888765567889999999999986
Q ss_pred C--CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC----cchHHHHhhhCCcHHHHHHHhhcC----ChHH
Q 038217 547 H--TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ----PIGAAAVGEEEMAVTGLVGMMRCG----TPRG 614 (715)
Q Consensus 547 ~--~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~----~e~~~~i~~~g~~I~~Lv~lL~~~----s~~~ 614 (715)
. ++.-..+++ ++|.|..+|+ |...++.++-.+..++.. ++--++++..+- |....++|... +...
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dL-i~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDL-ITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhH-HHHHHHHHhcCcccccccc
Confidence 3 444444444 4999999996 778888888888888652 345567788887 89888887653 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC
Q 038217 615 KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG 654 (715)
Q Consensus 615 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~ 654 (715)
.---+..|..+|.++ .-....+.+ .++...|..++..-
T Consensus 401 ~~~vIrmls~msS~~-pl~~~tl~k-~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGS-PLLFRTLLK-LDIADTLKRILQGY 438 (1051)
T ss_pred hhHHHHHHHHHccCC-hHHHHHHHH-hhHHHHHHHHHhcc
Confidence 444556666777776 445566767 88999998888643
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.4e-06 Score=86.40 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=148.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGS 478 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~ 478 (715)
.+.+.+.+..|+..|..++ ++.+|...+...|+..+|+.+|.+++..+++.|+++|...+.++ ..+..++ +.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~-E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVI-ELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-HcccHHH
Confidence 3668999999999999999 56899999999999999999999999999999999999998776 5578888 9999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcCC-ccHHHH
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHT-DNCVRM 554 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~~-~n~~~i 554 (715)
|+..|.+..+..++..|+.++.+|-.+.. .....-. .++...|.+.++++ +...+..++..+..|.... .....+
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999987678889999999999988766 4444444 67799999999984 4688999999999998644 445544
Q ss_pred HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 555 IEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 555 v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
-..|....++.+.. +.++.+.++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 45566666666654 55677777777665544
No 43
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-08 Score=99.22 Aligned_cols=60 Identities=27% Similarity=0.497 Sum_probs=53.1
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCCccccccCCCCccHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVHDRLVPNRAL 347 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~~~l~pn~~l 347 (715)
.-..|.|-||++.-+|||++.|||-||-.||.+|+.. ....||+|+..++.+.++|-+..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 3458999999999999999999999999999999985 35678999999999999887654
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.4e-08 Score=99.31 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~ 356 (715)
+-.-++|-||.++++-|++++||||||..||.+++.. ++.||.|+.+.....+..+..++.+++.|..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3345799999999999999999999999999999988 8899999998888888888888888877754
No 45
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.59 E-value=2.9e-08 Score=72.21 Aligned_cols=39 Identities=36% Similarity=0.958 Sum_probs=36.3
Q ss_pred CccCcccccCce-eCCCccHhhHHHHHHHHH-hCCCCCCCC
Q 038217 294 CPIMLDLMRDPV-IISTGQTYDRRSIARWME-EGHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv-~~~cghtfcr~cI~~w~~-~~~~~CP~c 332 (715)
||||++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 779999999999999999 567889987
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.58 E-value=2.1e-08 Score=73.02 Aligned_cols=36 Identities=19% Similarity=0.685 Sum_probs=23.4
Q ss_pred CccCcccccC----ceeCCCccHhhHHHHHHHHHhC---CCCCC
Q 038217 294 CPIMLDLMRD----PVIISTGQTYDRRSIARWMEEG---HRTCP 330 (715)
Q Consensus 294 CpIc~~lm~d----Pv~~~cghtfcr~cI~~w~~~~---~~~CP 330 (715)
||||.+ |.+ |+.++|||+||+.|+++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999964 45676
No 47
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.5e-08 Score=98.43 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=49.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
...+..+.|.+|++-+.+|..++|||.||-+||..|+.+ ...||.||..+.+.++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 456667999999999999999999999999999999998 6679999999887765
No 48
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.51 E-value=7.2e-08 Score=96.97 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=40.6
Q ss_pred CCCCcCccCcccccCc--------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDP--------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dP--------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.++..||||++.+.++ ++.+|||+||+.||.+|+.. ..+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4467999999987764 45589999999999999986 789999998764
No 49
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.50 E-value=6.2e-08 Score=73.77 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=40.9
Q ss_pred CCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+++.|+||++...++++.+|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 36789999999999999999999 999999999995 889999998764
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.48 E-value=1.6e-05 Score=87.27 Aligned_cols=232 Identities=18% Similarity=0.146 Sum_probs=169.9
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhh
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
....|...|+++ +.+.+.-|+..+..+.+. +..|..+.+.++++.|+.+|+. .+..++.+++-+++-|+.+++...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 445666777654 466777888999999975 7999999999999999999976 367899999999999999988777
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-------hhHHHHhcccCcHHHHHHHhhc---CChhHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-------EYKKKIADESGAVEALATLLRL---GTPRGKKDA 537 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-------~~~~~I~~~~g~I~~Lv~LL~~---~~~~~~~~A 537 (715)
.+. ..+.|+.++.+++....+.+...+.++|.||.... .....++. .|. +.++..|.. .+++...+-
T Consensus 223 ~~~-~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~l-~~~l~~L~~rk~~DedL~edl 299 (429)
T cd00256 223 VLK-RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CKV-LKTLQSLEQRKYDDEDLTDDL 299 (429)
T ss_pred hhc-cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cCh-HHHHHHHhcCCCCcHHHHHHH
Confidence 776 88999999999998756778899999999998743 23344444 454 455555544 233332221
Q ss_pred HH-------HHHHhhcC------------------------CccHHHHHHhC--ChHHHHHhhC---ChhHHHHHHHHHH
Q 038217 538 VT-------ALFNLSTH------------------------TDNCVRMIEAG--AVTALVGALG---HEGVAEEAAGALA 581 (715)
Q Consensus 538 ~~-------aL~nLs~~------------------------~~n~~~iv~aG--~v~~Lv~lL~---~~~~~~~al~~L~ 581 (715)
-. -+..|++. .+|..++-+.+ ++..|+.+|. |+.+..-|+.=+.
T Consensus 300 ~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig 379 (429)
T cd00256 300 KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG 379 (429)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence 11 11222211 13566665543 4788899984 5666666777777
Q ss_pred HHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 582 LIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 582 ~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.++. +|.||..+-+.|+ =..++++|.+.++++|..|+.++-.|-.
T Consensus 380 e~vr~~P~gr~i~~~lg~-K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 380 EYVRHYPRGKDVVEQLGG-KQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHCccHHHHHHHcCc-HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8877 5899999988888 7888889999999999999988876643
No 51
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.46 E-value=1.6e-06 Score=78.03 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.+.+..||.... ..+.+.+.+.+..|.+++. +|.|...+.+.+++...+.-|...|..+.+.++..|+||+.+..|++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 357788888886 6789999999999999997 59999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATL 525 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~L 525 (715)
.|. ++++++.++..+.+. ...+...|+.+|..|+.... .+..+.. +.++..+.+.
T Consensus 94 ~I~-ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~ 149 (173)
T KOG4646|consen 94 FIR-EALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW 149 (173)
T ss_pred HHH-HhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence 999 999999999999997 88888899999999987554 6777766 4444444433
No 52
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.43 E-value=8.9e-08 Score=70.82 Aligned_cols=40 Identities=28% Similarity=0.727 Sum_probs=33.8
Q ss_pred cCccCccccc---CceeCCCccHhhHHHHHHHHHhCCCCCCCCc
Q 038217 293 CCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEGHRTCPKTG 333 (715)
Q Consensus 293 ~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~ 333 (715)
.||||++-+. .++.++|||.|+..||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999984 4455699999999999999998 67999995
No 53
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-07 Score=88.02 Aligned_cols=57 Identities=23% Similarity=0.510 Sum_probs=47.1
Q ss_pred CCCCCCCcCccCcccccC--ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 286 LSIPKDFCCPIMLDLMRD--PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~d--Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
.....-|.||||++-+.. ||.+.|||.||+.||...++. ...||+|++.+++..+.+
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 344556999999999876 445699999999999999998 678999999888776544
No 54
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.1e-06 Score=93.32 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=50.5
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
...-++||.|..-.+|.|++.|||.||..||++.+....+.||.|+..|...++.|
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34467999999999999999999999999999999998999999999998777654
No 55
>PRK09687 putative lyase; Provisional
Probab=98.38 E-value=1.3e-05 Score=84.09 Aligned_cols=172 Identities=16% Similarity=0.084 Sum_probs=120.4
Q ss_pred hhhHHHHHHc----CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 038217 422 KENRAFIAKA----GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAA 497 (715)
Q Consensus 422 ~~~r~~i~~~----G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~ 497 (715)
++++...... -.++.|..+|.+.|..++..|+.+|..+. ...+++.+..+++++ +...|..|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~-d~~vR~~A~~ 76 (280)
T PRK09687 9 KASKEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSK-NPIERDIGAD 76 (280)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3455544433 35889999999999999999999987664 455677888888887 9999999999
Q ss_pred HHHHhccCchhHHHHhcccCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHH
Q 038217 498 TLFSLSAVHEYKKKIADESGAVEALATL-LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAE 574 (715)
Q Consensus 498 ~L~~Ls~~~~~~~~I~~~~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~ 574 (715)
+|..|...+.. . ..+++.|..+ +++.++.++..|+.+|.+++....+. ...++..+...+. +..++.
T Consensus 77 aLg~lg~~~~~-----~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 77 ILSQLGMAKRC-----Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred HHHhcCCCccc-----h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHH
Confidence 99998653321 1 3467888877 55667889999999999986533211 1113444555554 457777
Q ss_pred HHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 575 EAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 575 ~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
.++.+|..+. ...+ ++.|+.++.+.++.++..|+.+|..+.
T Consensus 147 ~a~~aLg~~~----------~~~a-i~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 147 AVAFALSVIN----------DEAA-IPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHhccC----------CHHH-HHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 7777775442 1123 777777777777777777777777663
No 56
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.37 E-value=3.4e-07 Score=67.47 Aligned_cols=43 Identities=35% Similarity=0.861 Sum_probs=38.7
Q ss_pred cCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 293 CCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.|+||++.+.+|+.+ +|||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 499999999888877 5999999999999999878889999864
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.33 E-value=5.5e-06 Score=74.63 Aligned_cols=151 Identities=15% Similarity=0.051 Sum_probs=118.2
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
..+-+..||.-.+...+.|+++...+-|.|.+.++.|-..+.+ ..++...++.|...+...++.++..|+|||.++.|.
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 4567888888888776899999999999999999988888888 899999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
..|++++++|..+..++++ ...-.++..|..|+.. ..-+.++..... +..+.+.-.+.+...+-.|-..|-.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~V-v~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAV-VRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHH-HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999854 6677788888888653 335566665444 4444443333444444444444433
No 58
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.5e-07 Score=97.50 Aligned_cols=71 Identities=28% Similarity=0.539 Sum_probs=61.1
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
....+++.||||++.+.+|++++|||+||+.|+..++. +...||.|+. . ...+.+|..+.+++..+...+.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCC
Confidence 45677999999999999998889999999999999999 6789999996 3 2377799999999888776554
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.33 E-value=1.5e-07 Score=73.15 Aligned_cols=43 Identities=33% Similarity=0.833 Sum_probs=31.7
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHH-hCCCCCCCCc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWME-EGHRTCPKTG 333 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~-~~~~~CP~c~ 333 (715)
.+.|||++..|.+||.- .|||+|++..|.+|+. .+...||..|
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 78999999999999986 9999999999999994 3567899943
No 60
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.32 E-value=8.1e-05 Score=90.84 Aligned_cols=228 Identities=18% Similarity=0.102 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
....++.|+..|.+.++.+|..|+..|..+. ..++++.|+.+|++++..++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 3456789999999999999999999887654 2457899999999999999999999997763211
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-----------h--hHHH----HhcccCcHHHHHHHhhcCC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-----------E--YKKK----IADESGAVEALATLLRLGT 530 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-----------~--~~~~----I~~~~g~I~~Lv~LL~~~~ 530 (715)
...+.+...|++. +..+|..|+.+|..+...+ + .+.. ++. .+..+.|..++.+++
T Consensus 684 ------~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l~D~~ 755 (897)
T PRK13800 684 ------PPAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAATDEN 755 (897)
T ss_pred ------CchHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHhcCCC
Confidence 1223455556554 6666666666665543110 0 0000 000 111233344444444
Q ss_pred hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh
Q 038217 531 PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR 608 (715)
Q Consensus 531 ~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~ 608 (715)
+.++..++.+|..+... ....++.|+.+++ |+.++..|+..|..+... ... ++.++..+.
T Consensus 756 ~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~-~~~l~~aL~ 817 (897)
T PRK13800 756 REVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDD-VAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chh-HHHHHHHhc
Confidence 44444444444443221 1122566666665 446666666666665221 111 345666677
Q ss_pred cCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 609 CGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 609 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+.++.+|..|+.+|..+.. ...++.|..++.+.+..++..|...|..+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6677777777777755431 11357788888888888888888777654
No 61
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.1e-05 Score=81.36 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=150.0
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHH
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVE 520 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~ 520 (715)
.+.+.+-++.|+.-|..+..+-+|...++ ..|++.+++..++++ +.++|+.|+++|...+.+.. ....+.+ .|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~-~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLI-SLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHh-hccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHH
Confidence 34678889999999999999999999999 999999999999998 99999999999999988666 5555666 89999
Q ss_pred HHHHHhhcCC-hhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC----ChhHHHHHHHHHHHHhCC-cchHHHH
Q 038217 521 ALATLLRLGT-PRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG----HEGVAEEAAGALALIVRQ-PIGAAAV 593 (715)
Q Consensus 521 ~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L~~La~~-~e~~~~i 593 (715)
.|+.++...+ ...+..|+.|+++|-.+. .....+...++...|...|. +..++..++..+..|... ......+
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999998655 467799999999999864 47888999999999999996 347888999999998763 3344433
Q ss_pred hhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 594 GEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 594 ~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
...+. ...++.+..+.....+++|+.++..+...
T Consensus 250 ~~~~f-~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGF-QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhh-hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 34444 56666677778899999999988777665
No 62
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.29 E-value=8.2e-07 Score=63.07 Aligned_cols=39 Identities=41% Similarity=1.037 Sum_probs=36.2
Q ss_pred CccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCC
Q 038217 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c 332 (715)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999667889986
No 63
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.27 E-value=3e-05 Score=82.70 Aligned_cols=262 Identities=17% Similarity=0.188 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCch-
Q 038217 389 RATAELLIQQLANGSPRA--KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDK- 464 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~--~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~- 464 (715)
++.+..|++++.+.+.+. +.+|.+.|..+.. .+|+..++..| ...++.+-+. ..++.+...+.+|.++-.+++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 467788999999887776 7889998888774 68999999887 4445554443 567889999999999988774
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
....++ ..|++..++-..+.. ++.+..+++-+|.|.+.+. ..+..|++ ..+-+-|+-|-.+.++-.+-.|+.+.+
T Consensus 256 t~~~Lv-aa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 256 TCQRLV-AAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred HHHHHH-hhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 478888 899999999888887 8899999999999887644 57888888 788888888877777777889999999
Q ss_pred HhhcCCccHHHHHHhCChH---HHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 543 NLSTHTDNCVRMIEAGAVT---ALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 543 nLs~~~~n~~~iv~aG~v~---~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
-|+.+.+.-..+.+.|.+. +++..+ |+. ..+.+ ....+-.+....+..|+.+|++. +.-..++
T Consensus 333 vlat~KE~E~~VrkS~TlaLVEPlva~~-DP~----------~FARD-~hd~aQG~~~d~LqRLvPlLdS~--R~EAq~i 398 (832)
T KOG3678|consen 333 VLATNKEVEREVRKSGTLALVEPLVASL-DPG----------RFARD-AHDYAQGRGPDDLQRLVPLLDSN--RLEAQCI 398 (832)
T ss_pred hhhhhhhhhHHHhhccchhhhhhhhhcc-Ccc----------hhhhh-hhhhhccCChHHHHHhhhhhhcc--hhhhhhh
Confidence 9999888776666776543 333333 331 11111 01111112223578899999743 3333344
Q ss_pred HHHHHHHhcC---CHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 620 AALLELCRSG---GASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 620 ~~L~~L~~~~---~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
++ ..+|... ..+....+..+-|.|..|.++..+.+..+..-|...|+++.+
T Consensus 399 ~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 399 GA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 44 3445432 112223444558899999999998777777888889988865
No 64
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.4e-07 Score=95.42 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=62.9
Q ss_pred CCCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccc-cCCCCccHHHHHHHHHHHHh
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLV-HDRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~-~~~l~pn~~l~~~i~~~~~~ 357 (715)
+..+.-+|.||||+++++..+++ .|+|.||+.||.+-+..|+..||.|++.+. ...|.++.....+|.+....
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 34567789999999999999988 899999999999999999999999999975 45688888888888776544
No 65
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.27 E-value=6.8e-05 Score=86.21 Aligned_cols=249 Identities=16% Similarity=0.193 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~~I 469 (715)
.++.+...|.+.++.+|++|+..+..+.+.+++. +... .++.+.++|.+.|+.++..|+.++..+ ..++ .-..+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 3344444444555555555555555555443332 1111 355555555555555555555555555 1111 00111
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ...+..|..++... ++-.+..++.+|..++........- ...++.+..++++.++.+.-.++.++..+.....
T Consensus 190 ~--~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 190 I--PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp H--HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred H--HHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence 1 22333333333333 4444555555555444433322211 3455555555554445555555555555544333
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-cCChHHHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR-CGTPRGKENAVAALLELC 626 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~-~~s~~~ke~A~~~L~~L~ 626 (715)
.-..+++.|+.+|. ++.++-.++..|..++... ...+. . ....+..+. +.+...|..++.+|..++
T Consensus 264 -----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---N-QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred -----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---h-hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 22335666666664 3456666666666665432 22222 2 233334444 456666666666666666
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 038217 627 RSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQ 670 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~ 670 (715)
.. ..+. . +++.|...+. .+++..++.+...+..+.
T Consensus 333 ~~--~n~~-~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 333 NE--SNVK-E------ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp -H--HHHH-H------HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cc--cchh-h------HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 53 2221 1 2333555553 335555555554444433
No 66
>PHA02926 zinc finger-like protein; Provisional
Probab=98.24 E-value=8.6e-07 Score=86.08 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCCCCcCccCcccccC---------ceeCCCccHhhHHHHHHHHHhC-----CCCCCCCccccc
Q 038217 287 SIPKDFCCPIMLDLMRD---------PVIISTGQTYDRRSIARWMEEG-----HRTCPKTGQMLV 337 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~d---------Pv~~~cghtfcr~cI~~w~~~~-----~~~CP~c~~~l~ 337 (715)
...++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45568899999998644 3455999999999999999852 356999998764
No 67
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.22 E-value=0.00018 Score=87.92 Aligned_cols=227 Identities=22% Similarity=0.191 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-----
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD----- 463 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~----- 463 (715)
...++.|+..|++.+..++..|+..|..+...- ...+.|...|.+.|+.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 456788999999999999999988887764211 11245555566666666666666555432110
Q ss_pred ------hh--hhhhhh---hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChh
Q 038217 464 ------KN--KSRIMD---EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPR 532 (715)
Q Consensus 464 ------~n--k~~I~~---~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~ 532 (715)
+. |...+. ..+..+.|...+... +.++|..++.+|..+... ....++.|..+++++++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~ 790 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPL 790 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHH
Confidence 00 000000 112233445555555 666666666666655432 134578999999998999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG 610 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~ 610 (715)
++..|+.+|.++.... .+++.++..|+ +..++..|+.+|..+. .... ++.|+.+|.+.
T Consensus 791 VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a-~~~L~~~L~D~ 850 (897)
T PRK13800 791 VRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVA-VPALVEALTDP 850 (897)
T ss_pred HHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccch-HHHHHHHhcCC
Confidence 9999999998874321 12355777886 4478888999998763 2233 79999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 611 TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 611 s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
+..+|..|+.+|..+- .. +. ..+.|...+.+.+..+++.|...|+
T Consensus 851 ~~~VR~~A~~aL~~~~-~~-~~----------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 851 HLDVRKAAVLALTRWP-GD-PA----------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHhccC-CC-HH----------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999997761 11 21 2455777888899999999988775
No 68
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.20 E-value=9.2e-07 Score=90.81 Aligned_cols=66 Identities=17% Similarity=0.428 Sum_probs=56.8
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccC----CCCccHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD----RLVPNRALRNLIV 352 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~----~l~pn~~l~~~i~ 352 (715)
.++.....|++|..+|.|+.++ .|-||||++||.+++.. ..+||.|+..+..+ .+.++..|+.++.
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHH
Confidence 4566788999999999999988 79999999999999999 89999999777554 4677788887765
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.18 E-value=0.00023 Score=81.81 Aligned_cols=252 Identities=15% Similarity=0.136 Sum_probs=172.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.+...|.+.++.++..|+..+..+ +.++.... -.-...+..|.+++...++-.|...+..|..++..+.....
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~-- 228 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD-- 228 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--
Confidence 478888888888899999999888888 33333322 11123444445555678999999999999888766553321
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
....++.+..+|++. +..+...|+.++..+..... .. ..+++.|++++.+.++..+-.++..|..++...
T Consensus 229 -~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~-~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-- 298 (526)
T PF01602_consen 229 -KNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LL-QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-- 298 (526)
T ss_dssp -HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--
T ss_pred -HHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HH-HhhHHHHHHHhhcccchhehhHHHHHHHhhccc--
Confidence 157889999999877 88888889999998887666 22 468999999998777888888999998888754
Q ss_pred HHHHHHhCChHHHHHhh--C-ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-cCChHHHHHHHHHHHHHH
Q 038217 551 CVRMIEAGAVTALVGAL--G-HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR-CGTPRGKENAVAALLELC 626 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL--~-~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~-~~s~~~ke~A~~~L~~L~ 626 (715)
...+. . ....+..+ . |..++..++.+|..++. +++...| ++.|...+. ..++..++.++..+..++
T Consensus 299 -~~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~I------l~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 299 -PPAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEI------LDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp -HHHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHH------HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred -chhhh-h-hhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhH------HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 33333 2 22222333 2 56889999999999874 4444442 677888774 457789999999998888
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHH-HHHHHHHHHHHHhh
Q 038217 627 RSGGASATERVLKAPALVGLLQALLFTGTKRAR-RKAASLARVFQRCE 673 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k-~~A~~lL~~l~~~~ 673 (715)
...+. .. - -.++.++.++..+.+... .....+.+++.+..
T Consensus 369 ~~~~~-~~--~----~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~ 409 (526)
T PF01602_consen 369 EKFPP-DA--E----WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP 409 (526)
T ss_dssp HHHGS-SH--H----HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST
T ss_pred hccCc-hH--H----HHHHHHHHhhhhccccccchHHHHHHHHhhcCh
Confidence 65421 11 1 137779999987655555 44456777776654
No 70
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.8e-05 Score=85.44 Aligned_cols=213 Identities=17% Similarity=0.209 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
+..++.||..|+ ..+.+.+..|+++|.+++.--|.....+++.|+||.|+. |+.-.-.++.|.++.+|-.++....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 458899999998 568999999999999999988999999999999999986 5555788999999999999987654
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
..|. .+|++-..+..|.-- +..++..|.++..|.+. ..+.-..++ .++|.|..+|...+....+.++.++..+
T Consensus 288 ~AiL-~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 288 KAIL-QAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HHHH-hcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 6677 899999999999876 78899999999999875 333444443 4899999999988888888888888777
Q ss_pred hcC----CccHHHHHHhCChHHHHHhhC------ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhc
Q 038217 545 STH----TDNCVRMIEAGAVTALVGALG------HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 545 s~~----~~n~~~iv~aG~v~~Lv~lL~------~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
+.. ++--.++...|.|....++|. +..+-...+..|..+|+. +.....+.+.+- ...|-.+|..
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I-~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDI-ADTLKRILQG 437 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhH-HHHHHHHHhc
Confidence 642 334556788899999999985 235556667777788774 778888887776 6677666653
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00064 Score=69.81 Aligned_cols=269 Identities=17% Similarity=0.171 Sum_probs=187.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 392 AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 392 i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
...++..|.+.++.++..|+..+-.++.. ..+.+... .-.++.+.+++...++ -+.|+++|.|++.+..-++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45788999999999999999988888754 45555543 3678889999987666 6789999999999998888888
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcc-c----CcHHHHHHHh-hcC-Ch-hHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADE-S----GAVEALATLL-RLG-TP-RGKKDAVTALF 542 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~-~----g~I~~Lv~LL-~~~-~~-~~~~~A~~aL~ 542 (715)
.. .+..+++++.+. ....-..++.+|.||+..++....+... . .++..|++-. ..+ +. .-...-+-.+.
T Consensus 81 -~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 81 -QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred -HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 55 888888888876 5567778899999999988765554321 1 3344444433 322 21 23445677788
Q ss_pred HhhcCCccHHHHHHhCChHH--HHHhhC-ChhH-HHHHHHHHHHHhCCcchHHHHhhhCCcHHHHH--------------
Q 038217 543 NLSTHTDNCVRMIEAGAVTA--LVGALG-HEGV-AEEAAGALALIVRQPIGAAAVGEEEMAVTGLV-------------- 604 (715)
Q Consensus 543 nLs~~~~n~~~iv~aG~v~~--Lv~lL~-~~~~-~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv-------------- 604 (715)
||+.....|..+.....++. ++.+=+ +..+ +...+++|.|.|........++. .. +..|.
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~-~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ES-INLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-ch-HHHHHHHHhhcCCccccCH
Confidence 99998888888776653332 222222 2233 24467888898876666666655 32 33332
Q ss_pred ----------HHhhc-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 038217 605 ----------GMMRC-----GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARV 668 (715)
Q Consensus 605 ----------~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~ 668 (715)
+++-. .++.++..-+.+|+.||.. ...++.+.. -|+.+.|.++=... ++.+++++-.+.++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22221 3577788899999999987 556778877 88888777766554 77888888888888
Q ss_pred HHHh
Q 038217 669 FQRC 672 (715)
Q Consensus 669 l~~~ 672 (715)
+-+-
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 8763
No 72
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=2.6e-06 Score=88.18 Aligned_cols=62 Identities=19% Similarity=0.410 Sum_probs=46.9
Q ss_pred CCCcCccCccc-ccCce---eC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCC----CCccHHHHHHH
Q 038217 290 KDFCCPIMLDL-MRDPV---II-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR----LVPNRALRNLI 351 (715)
Q Consensus 290 ~~~~CpIc~~l-m~dPv---~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~----l~pn~~l~~~i 351 (715)
++..||+|..- ...|- .+ +|||.||.+|+.+.|..|...||.|+.++.... +.++..+...|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 46789999972 33443 23 699999999999999888889999999988776 44555544433
No 73
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.9e-06 Score=93.32 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=57.9
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHh----CCCCCCCCccccccCCCCccH----HHHHHHHHHHHhcCC
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE----GHRTCPKTGQMLVHDRLVPNR----ALRNLIVQWCTAHGI 360 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~~~~l~pn~----~l~~~i~~~~~~~~~ 360 (715)
+..||||++...-|+.+.|||.||-.||.++|.. +...||.|+..+..+++.|-+ .-+..+..++..||+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 8899999999999999999999999999999986 457899999998887765543 333447777888884
No 74
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.04 E-value=3.9e-06 Score=61.98 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=34.9
Q ss_pred cCccCcccc---cCceeCCCccHhhHHHHHHHHHhCCCCCCCCcc
Q 038217 293 CCPIMLDLM---RDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 293 ~CpIc~~lm---~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 356677999999999999998 44779999974
No 75
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.2e-06 Score=84.30 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHH-HHHhCCCCCCCCccccccCCC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIAR-WMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~-w~~~~~~~CP~c~~~l~~~~l 341 (715)
+..+|.|+||++.+.+|+.++|||.||-.||.. |-......||.||+......+
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 367999999999999999999999999999999 877766679999987655443
No 76
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.01 E-value=0.00028 Score=75.23 Aligned_cols=232 Identities=16% Similarity=0.130 Sum_probs=171.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 392 AELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 392 i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
...|...+++ .+.+...-|+++|+.+.+. ++.|..++.++++..|+..|.+ .+..+|.+.+-+++.|+.++.-.+.
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~ 236 (442)
T KOG2759|consen 158 KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEK 236 (442)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHH
Confidence 4566666665 6777788899999999976 7999999999999999998843 5789999999999999999988777
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-------hHHHHhcccCcHHHHHHHhhcC---ChhHHHHHH
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-------YKKKIADESGAVEALATLLRLG---TPRGKKDAV 538 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A~ 538 (715)
+. .-+.|+.|+++++......+..-.++++.||....+ ....+. .+.++.-++.|... +++...+--
T Consensus 237 ~~-~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~ 313 (442)
T KOG2759|consen 237 LK-RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIE 313 (442)
T ss_pred Hh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHH
Confidence 76 899999999999986566777889999999976552 223333 35666666666542 233222211
Q ss_pred H-------HHHHhhcC------------------------CccHHHHHHh--CChHHHHHhhC---ChhHHHHHHHHHHH
Q 038217 539 T-------ALFNLSTH------------------------TDNCVRMIEA--GAVTALVGALG---HEGVAEEAAGALAL 582 (715)
Q Consensus 539 ~-------aL~nLs~~------------------------~~n~~~iv~a--G~v~~Lv~lL~---~~~~~~~al~~L~~ 582 (715)
. -...||+. .+|..++-+. ..+..|+++|. |+.+..-|+.=+..
T Consensus 314 ~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge 393 (442)
T KOG2759|consen 314 FLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGE 393 (442)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHH
Confidence 1 11222222 1355555443 35888999995 56666666666666
Q ss_pred HhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 583 IVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 583 La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
..+ .|+|+..+.+.|| =..++++|.+.++++|-+|+.++..|-.+
T Consensus 394 ~Vr~yP~gk~vv~k~gg-Ke~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 394 YVRHYPEGKAVVEKYGG-KERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHhCchHhHHHHHhch-HHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 666 6999999999999 89999999999999999999988766543
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.00 E-value=9.5e-06 Score=81.35 Aligned_cols=71 Identities=18% Similarity=0.345 Sum_probs=61.4
Q ss_pred CcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccc-cccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 292 FCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQM-LVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~-l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
+.||+|..++++|+-+ +|||+||..||+..+....+.||.|... +-...+.|++..+..|+.+...+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~~~~ 347 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQRKKV 347 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988 8999999999999999889999999763 445679999999999998887554433
No 78
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.97 E-value=1e-05 Score=58.69 Aligned_cols=40 Identities=40% Similarity=0.555 Sum_probs=38.4
Q ss_pred ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhh
Q 038217 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460 (715)
Q Consensus 421 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs 460 (715)
+++++..+++.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999997
No 79
>PF05536 Neurochondrin: Neurochondrin
Probab=97.95 E-value=0.00061 Score=78.07 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=163.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh---HHHHHHcCChHHHHHhhcc-------CCHHHHHHHHHHHhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKEN---RAFIAKAGAIPHLRNLLST-------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~---r~~i~~~G~i~~Lv~lL~s-------~d~~~~~~A~~aL~nLs 460 (715)
.+...+..|++.+.+.+..++--+.++.+.++.+ +..+.++=+.+.|-+||.+ +....+.-|+++|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 5778889999888888899999999999877643 4457787667999999987 23567888999999999
Q ss_pred cCchh--hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHH
Q 038217 461 IYDKN--KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAV 538 (715)
Q Consensus 461 ~~~~n--k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~ 538 (715)
.+++- -..++ +-||.|++++.++.+.+....|..+|..++..++.+..+.. .|+|+.|++.+.+ .+.....|+
T Consensus 86 ~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 RDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred CChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHH
Confidence 87765 35555 78999999998873449999999999999999999999999 9999999999976 677889999
Q ss_pred HHHHHhhcCCccHHHHHHh----CChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHH----HHh
Q 038217 539 TALFNLSTHTDNCVRMIEA----GAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLV----GMM 607 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~iv~a----G~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv----~lL 607 (715)
.+|.+|+...+....--.. .+++.+-..+. ....+-..+..|..+-...+.. ........|+..+. .++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 9999998754411110111 23344444443 3345566777777764433211 11223333344443 455
Q ss_pred hc-CChHHHHHHHHHHHHHHh
Q 038217 608 RC-GTPRGKENAVAALLELCR 627 (715)
Q Consensus 608 ~~-~s~~~ke~A~~~L~~L~~ 627 (715)
++ -++..|..|+.+...|..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 55 367777777665555544
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.95 E-value=0.0046 Score=67.50 Aligned_cols=268 Identities=17% Similarity=0.202 Sum_probs=194.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
.+...+-+++.+++..+.+.+|.+.. +...-..+.+.+.=-.++.-|.. ++..-+++|+..+..+....++...+-
T Consensus 29 ~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~- 106 (371)
T PF14664_consen 29 RIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP- 106 (371)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC-
Confidence 33334445558888889999998886 46777777887766667776754 345568899999988877665555554
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
.|++..+|.+.... +...+..|.++|..|+..+. ..+.. .|++..|++.+.++..+.....+.++..+-..+..|
T Consensus 107 -~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 107 -RGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 78999999999987 88899999999999988543 23333 899999999998877678888888899998888888
Q ss_pred HHHHHhCChHHHHHhhC---------Ch--hHHHHHHHHHHHHhCCcchHHHHhhhC-CcHHHHHHHhhcCChHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG---------HE--GVAEEAAGALALIVRQPIGAAAVGEEE-MAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~---------~~--~~~~~al~~L~~La~~~e~~~~i~~~g-~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
..+...--+..++.-+. +. +....+..++..+-++..|--.+...+ .++..|+..|...+++.|+..+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 76654333444444442 11 234555666666656777777766554 2389999999888888999888
Q ss_pred HHHHHHHhcC-----------------CH----------------------------------HHHHHHHhcCCcHHHHH
Q 038217 620 AALLELCRSG-----------------GA----------------------------------SATERVLKAPALVGLLQ 648 (715)
Q Consensus 620 ~~L~~L~~~~-----------------~~----------------------------------~~~~~l~~~~g~i~~L~ 648 (715)
.++..+-.-. +. -....+.+ .|+++.|+
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~-~gL~~~L~ 340 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIE-AGLLEALV 340 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHH-cChHHHHH
Confidence 8877763311 00 01234556 99999999
Q ss_pred HHhhcC-CHHHHHHHHHHHHHH
Q 038217 649 ALLFTG-TKRARRKAASLARVF 669 (715)
Q Consensus 649 ~Ll~s~-~~~~k~~A~~lL~~l 669 (715)
++..+. ++...+||.-||.-+
T Consensus 341 ~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHHH
Confidence 999988 888899998877644
No 81
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0012 Score=75.05 Aligned_cols=238 Identities=16% Similarity=0.124 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCh------------hhHHHHHH-----cCChHHHHHhhccCCHHHHH
Q 038217 390 ATAELLIQQLAN--GSPRAKTVAAREIRLLAKTGK------------ENRAFIAK-----AGAIPHLRNLLSTHNPVAQE 450 (715)
Q Consensus 390 ~~i~~Lv~~L~s--~~~~~~~~A~~~L~~La~~~~------------~~r~~i~~-----~G~i~~Lv~lL~s~d~~~~~ 450 (715)
.+++.|+.-|+. .+++....++..+..+..+++ +.-.||++ .+.|..|+.++...|..++.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 356777888874 478888888888888876542 22234443 48899999999999999999
Q ss_pred HHHHHHhhhhcCc--hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc
Q 038217 451 NSVTAMLNLSIYD--KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 451 ~A~~aL~nLs~~~--~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
.|+..|.+|-... +-+..+...+-+|..|+.+|... ...+|-.|.-.|..|+.....-.++++..+++..|+.++.+
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999986554 44666664799999999999886 66778888899999999999888998888999999999976
Q ss_pred CC-h---hHHHHHHHHHHHhhcC-CccHHHHHHhCChHHHHHhhC-----Ch----------hHHHHHHHHHHHHhCC--
Q 038217 529 GT-P---RGKKDAVTALFNLSTH-TDNCVRMIEAGAVTALVGALG-----HE----------GVAEEAAGALALIVRQ-- 586 (715)
Q Consensus 529 ~~-~---~~~~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~-----~~----------~~~~~al~~L~~La~~-- 586 (715)
+. . -+..+++..|-||-.+ ..|...+.+.|.||.|.++|. |+ .-...++.++..|+.-
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 32 2 3588999999999874 569999999999999999985 42 1134577777777651
Q ss_pred -----cchHHHHhhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHHHhcC
Q 038217 587 -----PIGAAAVGEEEMAVTGLVGMMRCG--TPRGKENAVAALLELCRSG 629 (715)
Q Consensus 587 -----~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~ 629 (715)
..+..++...+. +..|..++.+. ..+++..+.-++.++.+++
T Consensus 300 t~~~~~q~qk~l~ss~l-l~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHL-LDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred cHHHHHHHHHHHHHcch-HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 123345566666 89999976653 5677888888888888775
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=97.93 E-value=0.00021 Score=81.77 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=124.2
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch----hHHHHhcccCcHHHHHHHhhcCC-------hhHHHHHHHHH
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE----YKKKIADESGAVEALATLLRLGT-------PRGKKDAVTAL 541 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~I~~~~g~I~~Lv~LL~~~~-------~~~~~~A~~aL 541 (715)
.-.++..+.+|+.. +.+-|-.++..+..+...++ .+..|.+ .=+.+.|-+||+.+. ...+..|+..|
T Consensus 4 ~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 4 SASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred hHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 34577788899988 67888888999999987665 2344666 555799999998732 35677899999
Q ss_pred HHhhcCCcc--HHHHHHhCChHHHHHhhC--Ch-hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHH
Q 038217 542 FNLSTHTDN--CVRMIEAGAVTALVGALG--HE-GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKE 616 (715)
Q Consensus 542 ~nLs~~~~n--~~~iv~aG~v~~Lv~lL~--~~-~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke 616 (715)
..+|..++. ..+|+. -||.|++.+. +. .+...|+.+|..++.+++|+.++++.|+ |+.|++.+.+ .+...+
T Consensus 82 ~~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~-v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGA-VPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCC-HHHHHHHHHh-CcchHH
Confidence 999997764 455554 4999999995 44 8999999999999999999999999999 9999999886 778899
Q ss_pred HHHHHHHHHHhcCC
Q 038217 617 NAVAALLELCRSGG 630 (715)
Q Consensus 617 ~A~~~L~~L~~~~~ 630 (715)
.|+.+|.+++...+
T Consensus 158 ~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 158 IALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998765
No 83
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00094 Score=77.53 Aligned_cols=242 Identities=17% Similarity=0.218 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHH----cCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAK----AGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIV 480 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv 480 (715)
...-++.+|+|+.+.+|+....+.. .|..+.+..+|.. +++.+|.-|+.++..+..+.+.-..|+ ..|++..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a-~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLA-TCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHH-hhhHHHHHH
Confidence 4466899999999999987766653 3777888888865 788999999999999999988889999 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhhc-------------
Q 038217 481 KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLST------------- 546 (715)
Q Consensus 481 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~------------- 546 (715)
.+|.+ -+..|+.++.+|..|+++...-+.... .|++.-+..++...+ ++.+..|+..|..|..
T Consensus 1820 ~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1820 TLLHS--QPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 99988 567899999999999998876666655 666665554443211 2222222222222211
Q ss_pred --------------------------------------------------------------------------------
Q 038217 547 -------------------------------------------------------------------------------- 546 (715)
Q Consensus 547 -------------------------------------------------------------------------------- 546 (715)
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence
Q ss_pred -----------------------------------------------------------CCccHHHHHHhCChHHHHHhh
Q 038217 547 -----------------------------------------------------------HTDNCVRMIEAGAVTALVGAL 567 (715)
Q Consensus 547 -----------------------------------------------------------~~~n~~~iv~aG~v~~Lv~lL 567 (715)
++.-..++-..|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 111111122224555555554
Q ss_pred C--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHH
Q 038217 568 G--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVG 645 (715)
Q Consensus 568 ~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~ 645 (715)
. +..+-..|+.+|..|+.+.-+..++.+... +..++..|.. .+..-..|+.+|..+......+...+..+ .|+++
T Consensus 2057 ~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~-i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK-~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC-IDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLK-CGLVP 2133 (2235)
T ss_pred HhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc-chhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcHH
Confidence 2 233447789999999988889999988877 7888887764 23333488888888877665667778888 99999
Q ss_pred HHHHHhhcC
Q 038217 646 LLQALLFTG 654 (715)
Q Consensus 646 ~L~~Ll~s~ 654 (715)
.|+.|+...
T Consensus 2134 yLL~LLd~~ 2142 (2235)
T KOG1789|consen 2134 YLLQLLDSS 2142 (2235)
T ss_pred HHHHHhccc
Confidence 999999653
No 84
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0016 Score=69.88 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc------hh----hhhhhhhcCcHHH
Q 038217 409 VAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD------KN----KSRIMDEEGCLGS 478 (715)
Q Consensus 409 ~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~------~n----k~~I~~~~g~i~~ 478 (715)
..++.+..++. -|+....+++.++++.|+.||.+.+.++....+..|.-|...+ ++ -..++ +.++++.
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv-dg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV-DGQVLAL 180 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH-hccHHHH
Confidence 45667777775 4899999999999999999999999999999999998886432 22 23455 7889999
Q ss_pred HHHHHhcC-----CCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcC-C-hhHHHHHHHHHHHhhcCCc-
Q 038217 479 IVKVLRFG-----LTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLG-T-PRGKKDAVTALFNLSTHTD- 549 (715)
Q Consensus 479 Lv~lL~~~-----~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~-~-~~~~~~A~~aL~nLs~~~~- 549 (715)
||.-+.+- .......++.+++.|+...+ +++..+++ .|.+..|+.-+... . ...+..|..+|.-+-.+..
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 99888652 12234567788888887655 47777777 68888888755443 2 4667888888888876554
Q ss_pred cHHHHHHhCChHHHHHhhC-----C------hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG-----H------EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~-----~------~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
|+...-...+|..+++-+. | +++.++-...|+.+...++++...+...| +....-+++. ....+..|
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EG-lqLm~Lmlr~-Kk~sr~Sa 337 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEG-LQLMNLMLRE-KKVSRGSA 337 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcccc-HHHHHHHHHH-HHHhhhhH
Confidence 8888888899999998884 3 26778888888888788999999999888 5554445553 56678888
Q ss_pred HHHHHHHHhcCC-HHHHHHHHhcCC
Q 038217 619 VAALLELCRSGG-ASATERVLKAPA 642 (715)
Q Consensus 619 ~~~L~~L~~~~~-~~~~~~l~~~~g 642 (715)
+++|-....+.+ ...+..+++..|
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHh
Confidence 999977776652 256667777455
No 85
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.82 E-value=0.00045 Score=77.29 Aligned_cols=271 Identities=14% Similarity=0.054 Sum_probs=168.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHcC--ChHHH--HHhhccCCHHHHHHHHHHHhhhh-cCchh
Q 038217 397 QQLANGSPRAKTVAAREIRLLAKTGKENRA------FIAKAG--AIPHL--RNLLSTHNPVAQENSVTAMLNLS-IYDKN 465 (715)
Q Consensus 397 ~~L~s~~~~~~~~A~~~L~~La~~~~~~r~------~i~~~G--~i~~L--v~lL~s~d~~~~~~A~~aL~nLs-~~~~n 465 (715)
+.+++++...+..++.+|......+ .+.. .+.+.| .+-.. +.++..+......++....+.++ .-+.+
T Consensus 239 rL~k~~~~s~~l~sl~cl~~~~~~s-~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~skl 317 (678)
T KOG1293|consen 239 RLLKDPDFSERLRSLECLVPYLRKS-FNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKL 317 (678)
T ss_pred hhhhCCCccHHHHHHHHHHHHHhcc-ccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhh
Confidence 4455777777788888888877654 1111 112223 11111 11222222223333444445555 34455
Q ss_pred hhhhhhhcCcHHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCc-----hhHHHHhcccCcHHHHHHHhhcCChhHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGL-----TTEARENAAATLFSLSAVH-----EYKKKIADESGAVEALATLLRLGTPRGKK 535 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~Ls~~~-----~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~ 535 (715)
..... +..+++.++++|..+. .++.+.-++.-...+.... .+++.+-. .-....+..+....+.....
T Consensus 318 q~~~~-e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~-~~t~~~l~~~~~~kd~~~~a 395 (678)
T KOG1293|consen 318 QLPQH-EEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILE-TTTESHLMCLPPIKDHDFVA 395 (678)
T ss_pred hhHHh-hhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHH-HHHHHHHccccccccHHHHH
Confidence 55555 6778888888886431 2333332222222222111 12333322 12222222222234556777
Q ss_pred HHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCC
Q 038217 536 DAVTALFNLSTHTD-NCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGT 611 (715)
Q Consensus 536 ~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s 611 (715)
.|+.++.+++..-. -+.-+-...+..+|++++.++ .+...++++|.|++. ...-+..+++.|| |..+..++.+..
T Consensus 396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng-Id~l~s~~~~~~ 474 (678)
T KOG1293|consen 396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG-IDILESMLTDPD 474 (678)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc-HHHHHHHhcCCC
Confidence 77777777765322 222244557789999999755 778889999999987 5778999999999 999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 612 PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 612 ~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
+..+..++++|.++..+..+....+..+ --....|..+..+....+++.+-.+||.|--.
T Consensus 475 ~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 475 FNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986665555555 33467788888999999999999999988654
No 86
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.79 E-value=1.4e-05 Score=65.85 Aligned_cols=40 Identities=25% Similarity=0.728 Sum_probs=32.4
Q ss_pred cCccCcccccCc------------eeC-CCccHhhHHHHHHHHHhCCCCCCCCc
Q 038217 293 CCPIMLDLMRDP------------VII-STGQTYDRRSIARWMEEGHRTCPKTG 333 (715)
Q Consensus 293 ~CpIc~~lm~dP------------v~~-~cghtfcr~cI~~w~~~~~~~CP~c~ 333 (715)
.|+||++.+.+| +.. .|||.|...||.+|+.. +.+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 399999999433 333 89999999999999988 66999996
No 87
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.2e-05 Score=84.17 Aligned_cols=77 Identities=29% Similarity=0.474 Sum_probs=71.1
Q ss_pred cCCCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 284 TFLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 284 ~~~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
++.++|++|..|++..+|+|||++ .+|.+.+|+.|..++-. ..+.|..|.|++..+++||..+|..|..|....+.+
T Consensus 847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~K 924 (929)
T COG5113 847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQK 924 (929)
T ss_pred hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccccc
Confidence 668999999999999999999999 68899999999999988 788999999999999999999999999998776654
No 88
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.73 E-value=0.0058 Score=65.51 Aligned_cols=268 Identities=13% Similarity=0.077 Sum_probs=183.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCC----hHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGA----IPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~----i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.+.+..|..+++-....+.+.|..++.-+... .+.+. ...|-..+.+ .+.+...-|+.+|..+...++.|.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 35557777777777766777777776543221 11111 1223334444 677788888999999999999999
Q ss_pred hhhhhcCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVL-RFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs 545 (715)
.++ .+.++..++..+ .+--+..++....-+++-|+-++.....+.. .+.|+.|.+++++.. +.+..-.+.++.||.
T Consensus 193 ~~v-~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 193 AFV-IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred eee-ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 888999999988 3323678889999999999999998888844 899999999998754 567788889999998
Q ss_pred cCC-------ccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHH-------HHHhCCcc------------------
Q 038217 546 THT-------DNCVRMIEAGAVTALVGALG-----HEGVAEEAAGAL-------ALIVRQPI------------------ 588 (715)
Q Consensus 546 ~~~-------~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L-------~~La~~~e------------------ 588 (715)
... +....|+..++.+ -++.|. |+++.+..--+- ..|++.++
T Consensus 271 ~k~~~~~~~k~~~~~mv~~~v~k-~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMVLCKVLK-TLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred ccCchhhHHHHHHHHHHhcCchH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 765 2345566666544 445552 554443322222 22332222
Q ss_pred ------hHHHHhhhC-CcHHHHHHHhhcCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHH
Q 038217 589 ------GAAAVGEEE-MAVTGLVGMMRCGT-PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR 660 (715)
Q Consensus 589 ------~~~~i~~~g-~~I~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~ 660 (715)
+...+-+.+ ..+..|+.+|...+ |..--.|+.=+....+.-| +....+.+ .|+=..+++|+.+.+++++-
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~k-~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP-EGKAVVEK-YGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc-hHhHHHHH-hchHHHHHHHhcCCCchHHH
Confidence 222222211 13577888888754 6666677777788887764 34445555 99999999999999999999
Q ss_pred HHHHHHHHH
Q 038217 661 KAASLARVF 669 (715)
Q Consensus 661 ~A~~lL~~l 669 (715)
.|-...+.+
T Consensus 428 ~ALlavQ~l 436 (442)
T KOG2759|consen 428 HALLAVQKL 436 (442)
T ss_pred HHHHHHHHH
Confidence 887655543
No 89
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.9e-05 Score=89.80 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=70.2
Q ss_pred cCCCCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 284 TFLSIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 284 ~~~~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
...++|++|.-|+...+|.|||.++ +|++.||+-|.+++.. ..+.|.||.+|+...+.||..++..|..|..+...
T Consensus 863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~~ 939 (943)
T KOG2042|consen 863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKRN 939 (943)
T ss_pred HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhhh
Confidence 3467999999999999999999996 9999999999999998 78899999999999999999999999999887653
No 90
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0028 Score=75.35 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=155.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~~ 468 (715)
...+.+-.+|.|.+|..|..|+-.|..++.+..+.-.... ..+++..+..|.++++.+|..|+.++..++.+=.. -..
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 3556777788999999999999999999976544432211 25677778889999999999999999999876532 222
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHH-HHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVE-ALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~-~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
-. ..-.++.|+..+.+..+..++.+|+++|.+++..-.......=-.+.+. .|..+++++.+.+++.++++|...+..
T Consensus 427 ~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 23 4567789999998876889999999999999875442222111123444 222345567789999999999988764
Q ss_pred CccHHHHHHhCChHHHHHhhC---Chh---HHHHHHHHHHHHhCCcchHHHHhhhC-CcHHHHHHH---hhcCChHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEG---VAEEAAGALALIVRQPIGAAAVGEEE-MAVTGLVGM---MRCGTPRGKEN 617 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~---~~~~al~~L~~La~~~e~~~~i~~~g-~~I~~Lv~l---L~~~s~~~ke~ 617 (715)
.+.+-.=.-.-.+|.|.+.|. +.+ ++-++...+..++ ..-|++.+.... -++..+..+ ....++..+++
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 433222112245677777774 233 3333333333332 234555554322 224444444 22245666888
Q ss_pred HHHHHHHHHhcCCHHH
Q 038217 618 AVAALLELCRSGGASA 633 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~ 633 (715)
-...-..+|+.-|++.
T Consensus 585 ~~~~warmc~ilg~~F 600 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDF 600 (1075)
T ss_pred HHHHHHHHHHHhchhh
Confidence 8888888888665543
No 91
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.64 E-value=3.1e-05 Score=84.96 Aligned_cols=68 Identities=26% Similarity=0.577 Sum_probs=57.2
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc-cHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP-NRALRNLIVQW 354 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p-n~~l~~~i~~~ 354 (715)
..+.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......+ ...++..+..|
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 3477889999999999999995 99999999999999999 899999998887766555 45566666655
No 92
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.62 E-value=0.0041 Score=69.89 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSI 479 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~L 479 (715)
..+.+....|+-.+..++..-...|.-+....++.+||++|..++..++..++++|+|+... .+.|..+. ..|+|+.+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHH
Confidence 34677778888888888876566677777788999999999889999999999999999764 56699999 99999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC-cHHHHHHHhhcCChhHHHHHHHHHHHhhcC-CccHHHHHH
Q 038217 480 VKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG-AVEALATLLRLGTPRGKKDAVTALFNLSTH-TDNCVRMIE 556 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g-~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~ 556 (715)
.+++.+. +..+|.++.++|+++.-+.+...+..-... .-..++.+..+.+..+++.+...|+||.-+ .+....+++
T Consensus 467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999998 999999999999999988775544332122 234566777778889999999999999654 334444443
No 93
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.015 Score=69.50 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=182.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhc------Cc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSI------YD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~------~~ 463 (715)
.+..|+..|.+.+.+++.+|-+.+..+.+..+ ..+.|..++.+ .|++++.-|+-.+..|.. +.
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~ 74 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSA 74 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCH
Confidence 46678888999999999999999988886532 78888888865 789999988888888743 33
Q ss_pred hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
+.|..|. ..|+..+.+.....+|..-+.++..++.+.-.. .+++.++.|++..+++++..++.|+.+|+.
T Consensus 75 e~~~sik------s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 75 EVQQSIK------SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSS 144 (1075)
T ss_pred HHHHHHH------HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 4455555 345555555547788999999999998754333 568899999999999999999999999999
Q ss_pred hhcCCccHHHHHHhCChHHHHHhh----CC--hhHHHHHHHHHHHHhCCc-chHHHHhhhCCcHHHHHHHhhc----CCh
Q 038217 544 LSTHTDNCVRMIEAGAVTALVGAL----GH--EGVAEEAAGALALIVRQP-IGAAAVGEEEMAVTGLVGMMRC----GTP 612 (715)
Q Consensus 544 Ls~~~~n~~~iv~aG~v~~Lv~lL----~~--~~~~~~al~~L~~La~~~-e~~~~i~~~g~~I~~Lv~lL~~----~s~ 612 (715)
+...-+|... +.++.+..++ .| ..++..|+.++...+... .++...-.....+|.++..+.. |+.
T Consensus 145 ~~~~~~~~~~----~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 145 LPETFGNTLQ----PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD 220 (1075)
T ss_pred hhhhhccccc----hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch
Confidence 9876554432 3455555555 33 258888888888876643 4555555555557777765554 555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHHh
Q 038217 613 RGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG--TKRARRKAASLARVFQRC 672 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~~ 672 (715)
..-..+..+|-.|....+.-....+. .++.....+..+. .+.+|..|-..+--+.+.
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~---~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLS---QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHH---HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 55567777787777776443333332 2466667777665 778888888877777665
No 94
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.8e-05 Score=82.40 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=58.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC-----CCccHHHHHHHHHHHHh
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR-----LVPNRALRNLIVQWCTA 357 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~-----l~pn~~l~~~i~~~~~~ 357 (715)
..+..+|.|.||...+.+||+++|||+||..||.+-+.. ...||.|+.++.... ..+|+.+..+|..|+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 456889999999999999999999999999999997664 788999998886422 33466777788877654
No 95
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0022 Score=66.00 Aligned_cols=189 Identities=19% Similarity=0.172 Sum_probs=135.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
..++.||.+.++.++..|+..|.+|+.. ..+.....+.-.++.+.++++.. .. .+.|+.+|.|+|.....+..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 4588999999999999999999999877 43444443456778888888765 33 67889999999999999999988
Q ss_pred ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHh------CChHHHHHhhCCh-----hHHHHHHHHHHHH
Q 038217 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEA------GAVTALVGALGHE-----GVAEEAAGALALI 583 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a------G~v~~Lv~lL~~~-----~~~~~al~~L~~L 583 (715)
. .+..++.++.+.........+.+|.||+..++....+... .++..++..+.+. .--....-++.||
T Consensus 82 -~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 82 -D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred -H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 3 8888888887665667778889999999988765554322 2333344443221 2235567788999
Q ss_pred hCCcchHHHHhhhCCcH-HHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 584 VRQPIGAAAVGEEEMAV-TGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 584 a~~~e~~~~i~~~g~~I-~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
+..+.||.-+.....+. ..|+.+-..++.--|..-+++|.|.|...
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~ 206 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA 206 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccc
Confidence 99999999987766422 22222222245555777788999988774
No 96
>PTZ00429 beta-adaptin; Provisional
Probab=97.52 E-value=0.019 Score=68.01 Aligned_cols=256 Identities=16% Similarity=0.115 Sum_probs=150.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..+.+.|...++.+|+.|+-++.++-..+++ .+.+.|.++.|..+|.+.|+.++.+|+.+|..+.......-.+
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l- 216 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES- 216 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-
Confidence 556677778889999999999999998876653 3456789999999999999999999999999997654333222
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC--
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-- 548 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-- 548 (715)
..+.+..++..|... ++=.+.....+|..... ...... ...+..+...|++.++.+.-.|+.++.++....
T Consensus 217 -~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P--~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 217 -SNEWVNRLVYHLPEC-NEWGQLYILELLAAQRP--SDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCC--CCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 355666677777654 44444444444433211 111111 235566666677777777777788777776532
Q ss_pred ccHHHHHHhCChHHHHHhhC-ChhHHHH------------------------------------HHHHHHHHhCCcchHH
Q 038217 549 DNCVRMIEAGAVTALVGALG-HEGVAEE------------------------------------AAGALALIVRQPIGAA 591 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~-~~~~~~~------------------------------------al~~L~~La~~~e~~~ 591 (715)
+....+. ....++|+.+++ +++++-- .+.+|..|+. +++..
T Consensus 290 ~~~~~~~-~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan-e~Nv~ 367 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT-PSVAP 367 (746)
T ss_pred HHHHHHH-HHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC-cccHH
Confidence 1111110 112233444443 3344433 3444443331 22222
Q ss_pred HHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 592 AVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.| +.-|.+.+...+...+..++.++..++..-+. .. ..++..|+.++.++..-+.+....+-.++++
T Consensus 368 ~I------L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-~a------~~cV~~Ll~ll~~~~~~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 368 EI------LKELAEYASGVDMVFVVEVVRAIASLAIKVDS-VA------PDCANLLLQIVDRRPELLPQVVTAAKDIVRK 434 (746)
T ss_pred HH------HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-HH------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 22 23333444455677778888888777765421 11 2346678888877655554444444444455
Q ss_pred h
Q 038217 672 C 672 (715)
Q Consensus 672 ~ 672 (715)
+
T Consensus 435 y 435 (746)
T PTZ00429 435 Y 435 (746)
T ss_pred C
Confidence 4
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.46 E-value=0.013 Score=63.96 Aligned_cols=248 Identities=15% Similarity=0.057 Sum_probs=176.3
Q ss_pred HHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcC-CCHH
Q 038217 412 REIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG-LTTE 490 (715)
Q Consensus 412 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~-~~~e 490 (715)
..|-.+.+.++..|..+.-.-..+.+..++-+++.+++-.|..++..+..+.+.-..+. +.+.-..++.-|..+ ....
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~-~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILL-KLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCchhhHhhhcccCCChH
Confidence 34556667778777777766667777665555559999999999999999999888888 777777777777654 2456
Q ss_pred HHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh
Q 038217 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE 570 (715)
Q Consensus 491 ~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~ 570 (715)
.|+.|...++.+...+.....+ . .|.+..++.+....+++.+..|+.+|+.|+..+ -..++.+|++..|++.+.|+
T Consensus 84 ER~QALkliR~~l~~~~~~~~~-~-~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEI-P-RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccC-C-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhc
Confidence 7999999999887765444444 3 588999999998888899999999999998743 34566899999999999653
Q ss_pred --hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC-------C---hHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 571 --GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG-------T---PRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 571 --~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~-------s---~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
.+.+..+.++..+-.+|..|.-+...-. +..+..-..+. + .+.+..+..+...|-+.+|= ..--.
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~d-L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL--l~l~~ 236 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFD-LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL--LYLSM 236 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCcc-HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce--eeeec
Confidence 6788888888888888999887766555 56665532221 1 23343344444444444331 11111
Q ss_pred hcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 639 KAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 639 ~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.+-..+..|+..+...++.+++..-.++-
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11136888999999999988887665443
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.46 E-value=0.0068 Score=68.07 Aligned_cols=276 Identities=14% Similarity=0.130 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC-----CHHHHHHHHHHHhhhhcC-chhhhhhhhhcC
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH-----NPVAQENSVTAMLNLSIY-DKNKSRIMDEEG 474 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g 474 (715)
..++++..+|+++|.|....++..|..+++.|+.+.++..|+.. +.++.-....+|+-++.. .+.+..++.+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788899999999999999999999999999999999999875 788888899999888654 456777775778
Q ss_pred cHHHHHHHHhc--------C--------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC---------
Q 038217 475 CLGSIVKVLRF--------G--------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG--------- 529 (715)
Q Consensus 475 ~i~~Lv~lL~~--------~--------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~--------- 529 (715)
++..|+..|.. . .+.+....++.++||+......... ....+.++.|+.++..-
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 88888887742 0 1345567888999999765443322 11245566666654321
Q ss_pred ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-ChhHHHHHHHHHHH-HhCCcchHHHHhhhCCcHHHHHHHh
Q 038217 530 TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-HEGVAEEAAGALAL-IVRQPIGAAAVGEEEMAVTGLVGMM 607 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~-La~~~e~~~~i~~~g~~I~~Lv~lL 607 (715)
.......++.+|.|+-.. +...++....-..-+..-. +.......+.+|.. +....... . ... +.+++.+|
T Consensus 202 l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~---l-~~~-l~PlL~lL 274 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALK---L-DEL-LTPLLTLL 274 (446)
T ss_pred chhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCccc---c-hhh-HhhHHHHH
Confidence 135577788888887221 1111111000000000011 22333333444332 22211111 1 233 56666665
Q ss_pred hc---CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhh-hccCCCC
Q 038217 608 RC---GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENAA-LHFGGLG 683 (715)
Q Consensus 608 ~~---~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~~-~~~~~~~ 683 (715)
.. .+...|. .|...--....++...+-++..+-..|+.++.+..+..|..++.+|-.|.+..... ....|||
T Consensus 275 ~~~~~~~~~~Rk----~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG 350 (446)
T PF10165_consen 275 TRLARAAREVRK----YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYVGYG 350 (446)
T ss_pred HHHHHhcHHHHH----HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHcCch
Confidence 54 2233332 23222223323444455555668999999999999999999999999988755432 3456766
Q ss_pred ccccc
Q 038217 684 VGYAF 688 (715)
Q Consensus 684 ~~~~~ 688 (715)
-++++
T Consensus 351 ~AaG~ 355 (446)
T PF10165_consen 351 NAAGF 355 (446)
T ss_pred hHHHH
Confidence 55555
No 99
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0038 Score=69.96 Aligned_cols=268 Identities=13% Similarity=0.075 Sum_probs=176.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH----cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK----AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
..++.|...|.+.+...+..|..+|.+++.++++.-..=+- .-.+|.++++.++.++.++.+|+.++...-....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 47899999999999889999999999999877544332111 1358899999999999999999998876654432
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
+..+..-...++.+..+-... ++++|.+.+.+|..|-.....|-.--- .+.|+-++..-++.++.+.-.|+.....++
T Consensus 207 qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 233331234556666555444 999999999999998766544433222 467777777777777888899999999999
Q ss_pred cCCccHHHHHHh--CChHHHHHhhC--Chh--------------------------------------------------
Q 038217 546 THTDNCVRMIEA--GAVTALVGALG--HEG-------------------------------------------------- 571 (715)
Q Consensus 546 ~~~~n~~~iv~a--G~v~~Lv~lL~--~~~-------------------------------------------------- 571 (715)
..+-.+..+... ..||.|+.=+. +.+
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 888444433332 55666665542 110
Q ss_pred ------HHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHH----HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038217 572 ------VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG----MMRCGTPRGKENAVAALLELCRSGGASATERVLKAP 641 (715)
Q Consensus 572 ------~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~----lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~ 641 (715)
++.-++++|-.|+ -+..... ++.+.- .|.+..=..||.++-+|..++.+.- .-+....
T Consensus 365 ~~~dWNLRkCSAAaLDVLa-------nvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----~g~~p~L 432 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLA-------NVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----QGFVPHL 432 (885)
T ss_pred ccccccHhhccHHHHHHHH-------HhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----hhcccch
Confidence 1111222222222 1222222 444444 4444455779999999999886642 2333322
Q ss_pred -CcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 642 -ALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 642 -g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.++|.|+.++.+..+-++...-|.|.-+..+
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 2689999999998888887777777666654
No 100
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.41 E-value=0.00022 Score=51.66 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=38.0
Q ss_pred CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 586 QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 586 ~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
+++++..+++.|+ |+.|+.+|.++++..++.|+++|++||+
T Consensus 1 ~~~~~~~i~~~g~-i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGG-IPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTH-HHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccc-HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3678899999999 9999999999999999999999999984
No 101
>PTZ00429 beta-adaptin; Provisional
Probab=97.40 E-value=0.04 Score=65.36 Aligned_cols=247 Identities=14% Similarity=0.084 Sum_probs=166.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
+.+..|-..|.+.+...++.|++.|-.....+.+. ..+.+..++++.++|.+++.-..-.|.+++.....- .+
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-al 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-AL 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-HH
Confidence 45667778888888888888888765555333222 235667788899999999998888888887644322 22
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ++..+.+=+++. ++-.|..|+.+|.++-.. .+. .-.++.+.+.+.+.++-+++.|+.++.++-....
T Consensus 105 L----aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~-----~i~--e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 105 L----AVNTFLQDTTNS-SPVVRALAVRTMMCIRVS-----SVL--EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred H----HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcH-----HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 2 467777777776 889999998888887442 111 1345677778888889999999999999865332
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
..+.+.|.++.|..+|. |+.++.+|+.+|..+.......-. ...+. +..|+..+...++..|-..+.+|..
T Consensus 173 --elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~-~~~Ll~~L~e~~EW~Qi~IL~lL~~--- 245 (746)
T PTZ00429 173 --QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEW-VNRLVYHLPECNEWGQLYILELLAA--- 245 (746)
T ss_pred --ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHH-HHHHHHHhhcCChHHHHHHHHHHHh---
Confidence 23346678889999886 669999999999999754322222 22344 6677777766777888766666633
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 038217 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666 (715)
Q Consensus 628 ~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL 666 (715)
..+....+. ..++..+...+++.++.+.-.|..++
T Consensus 246 y~P~~~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~i 280 (746)
T PTZ00429 246 QRPSDKESA----ETLLTRVLPRMSHQNPAVVMGAIKVV 280 (746)
T ss_pred cCCCCcHHH----HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 322111111 12366677777777776665555543
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.015 Score=60.21 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=170.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHH----HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcC
Q 038217 399 LANGSPRAKTVAAREIRLLAKTGKENRA----FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEG 474 (715)
Q Consensus 399 L~s~~~~~~~~A~~~L~~La~~~~~~r~----~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g 474 (715)
|..++..++.-++..+..+..+.+.|-. .++.+|..+.++......|.++...|...+..++..+..-+.|. ...
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiF-eSe 169 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIF-ESE 169 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhc-ccc
Confidence 3334444445556666666655543321 34577899999999999999999999999999999998888887 666
Q ss_pred cHHHHH--HHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccH
Q 038217 475 CLGSIV--KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 475 ~i~~Lv--~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
....+- .+-... +.-+|......+..+++.......-+..+|.+..|..=|+. .+.-+..+++.....|......+
T Consensus 170 llDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgr 248 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGR 248 (524)
T ss_pred cCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhh
Confidence 555443 233333 55677788888888877665444445558888888877764 45566778899999999888889
Q ss_pred HHHHHhCChHHHHHhhC----ChhHHHHHHHH----HHHHhCCcchHHHHhhh-CCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG----HEGVAEEAAGA----LALIVRQPIGAAAVGEE-EMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~----~~~~~~~al~~----L~~La~~~e~~~~i~~~-g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
..+.+.|.|..+..++. ++--.-.++.. +.+.+--.-.-+++++. -.+|....+++...++..++.|+.+|
T Consensus 249 eflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDal 328 (524)
T KOG4413|consen 249 EFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDAL 328 (524)
T ss_pred hhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHH
Confidence 99999999999999984 44222333333 33332222222333321 11245556778888999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCC--cHHHHHHHhhcCCHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPA--LVGLLQALLFTGTKRARRK 661 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~s~~~~~k~~ 661 (715)
..+.++. +....+.+ .| ...+|+.-..+.+..++.-
T Consensus 329 GilGSnt--eGadlllk-Tgppaaehllarafdqnahakqe 366 (524)
T KOG4413|consen 329 GILGSNT--EGADLLLK-TGPPAAEHLLARAFDQNAHAKQE 366 (524)
T ss_pred HhccCCc--chhHHHhc-cCChHHHHHHHHHhcccccchHH
Confidence 9998774 34445555 55 4555555444445555443
No 103
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.036 Score=57.59 Aligned_cols=276 Identities=14% Similarity=0.118 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHH--HHhhccCCHHHHHHHHHHHhhhh-cCchhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHL--RNLLSTHNPVAQENSVTAMLNLS-IYDKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~L--v~lL~s~d~~~~~~A~~aL~nLs-~~~~nk 466 (715)
+..+.++..+-..+.++-..|...|..++.. +..-..|.+......+ +.+--..+.-++...+..+..+. +++...
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 4566777777778888889999999999964 7777777777665443 33333334445556666666664 444545
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC--hhHHHHHH----HH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT--PRGKKDAV----TA 540 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~--~~~~~~A~----~a 540 (715)
...- ..|.+..|..-|+...+.-++.++......|+..+..+..+.+ .|.|..+..++...+ |-.+-.++ +.
T Consensus 207 neck-kSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 207 NECK-KSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred hHhh-hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 5555 7899999988887754667888999999999998888888888 899999999986432 22222232 33
Q ss_pred HHHhhcCCccHHHHHHh--CChHHHHHhh--CChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc----CCh
Q 038217 541 LFNLSTHTDNCVRMIEA--GAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC----GTP 612 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a--G~v~~Lv~lL--~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~----~s~ 612 (715)
+.++...+-.-..++++ -+|.....++ +|+.+++.|+.+|..|-++.+|+..+...|. |..-.++.+ ...
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp--paaehllarafdqnah 362 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP--PAAEHLLARAFDQNAH 362 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC--hHHHHHHHHHhccccc
Confidence 44444333222333333 2244445554 3889999999999999999999999988876 333333322 334
Q ss_pred HHHHHHHHHHHHHHhcC---CHH--------HHHHH-----Hhc--CCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 613 RGKENAVAALLELCRSG---GAS--------ATERV-----LKA--PALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~---~~~--------~~~~l-----~~~--~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.-++.++.+|.+++..- ++. ....+ .+. ..-......+++...+...-.|-..+..+.
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 45777778887777532 111 11111 110 112445566777777777766655555544
No 104
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.28 E-value=0.00029 Score=58.80 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=36.3
Q ss_pred CCcCccCcccccC-ceeC-CCccHhhHHHHHHHHHh--CCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRD-PVII-STGQTYDRRSIARWMEE--GHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~d-Pv~~-~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~ 337 (715)
+-.||.|...-.+ |++. .|+|.|...||.+|+.. .+.+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3456666655445 6655 89999999999999996 3679999998764
No 105
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.21 E-value=0.00072 Score=48.52 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=36.9
Q ss_pred hhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc
Q 038217 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 422 ~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~ 461 (715)
++++..+.+.|+++.|+++|.+++.+++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4588899999999999999999999999999999999873
No 106
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00016 Score=73.46 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=45.0
Q ss_pred cCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 293 CCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
.|+||+.-+.-||.+.|+|.||.-||+.-...+..+||+|+++++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 699999999999999999999999999999988899999999997754
No 107
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00026 Score=70.98 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=42.1
Q ss_pred CCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
..+-.||+|++....|.++ +|||.||..||..-+.. -.++||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3467999999999999988 69999999999988764 3689999997654
No 108
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00018 Score=82.73 Aligned_cols=48 Identities=25% Similarity=0.588 Sum_probs=42.8
Q ss_pred CCCCcCccCcccccC-----ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRD-----PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d-----Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|+.. ..+||.|+..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 447799999999999 778899999999999999998 889999998443
No 109
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.13 E-value=0.0066 Score=65.40 Aligned_cols=171 Identities=19% Similarity=0.154 Sum_probs=135.0
Q ss_pred hHHHHHHcCChHHHHHhhccCCHHH--HHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 038217 424 NRAFIAKAGAIPHLRNLLSTHNPVA--QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS 501 (715)
Q Consensus 424 ~r~~i~~~G~i~~Lv~lL~s~d~~~--~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 501 (715)
....|...|++..|++++.+++.++ +..|...|-.+. ..+|+..++ ..| +..|+.+-+.....+.....+++|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va-~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVA-RIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHh-hcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 4556777899999999999987655 677777665553 456778887 655 55555555554478999999999999
Q ss_pred hccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC--CccHHHHHHhCChHHHHHhhC--ChhHHHHH
Q 038217 502 LSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH--TDNCVRMIEAGAVTALVGALG--HEGVAEEA 576 (715)
Q Consensus 502 Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~a 576 (715)
+-.+.+ .+..+++ .|++..++-..+..++....+++-+|.|...+ ...+.+|++..+-.-|..+-. |+-++-+|
T Consensus 249 mFKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 987655 6777777 89999999888888899999999999998865 457889999988888777653 66778888
Q ss_pred HHHHHHHhCCcchHHHHhhhCC
Q 038217 577 AGALALIVRQPIGAAAVGEEEM 598 (715)
Q Consensus 577 l~~L~~La~~~e~~~~i~~~g~ 598 (715)
+-+.+.|+.+.+--..+.+.|.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccc
Confidence 8889999988887777777776
No 110
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.096 Score=56.62 Aligned_cols=237 Identities=14% Similarity=0.109 Sum_probs=167.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-----h----hhHHHHHHcCChHHHHHhhccC------CHHHHHHHHH
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTG-----K----ENRAFIAKAGAIPHLRNLLSTH------NPVAQENSVT 454 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-----~----~~r~~i~~~G~i~~Lv~lL~s~------d~~~~~~A~~ 454 (715)
.+|+.|+..|...+.+.-...+.-++.+...+ . ..-..+++.++++.|++-+..= ...-..+++.
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 36789999999999999888888888888443 2 2344566778899999877642 2345677788
Q ss_pred HHhhhhcCch-hhhhhhhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhh----
Q 038217 455 AMLNLSIYDK-NKSRIMDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLR---- 527 (715)
Q Consensus 455 aL~nLs~~~~-nk~~I~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~---- 527 (715)
.+-|+..... -...++ +.|.+.-|+.-+.. +.-..-+..|..+|.-+-.+.+ ++...+. ..+|..|++-+.
T Consensus 205 vveNlv~~r~~~~~~~~-e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIV-EQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHhccHHHHHHHH-HhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchhhc
Confidence 8888877654 467777 67777766664433 2123346778888877765554 8888888 888988887663
Q ss_pred cC-----ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC-hhHHHHHHHHHHHHhCCcc---hHHHHhhhCC
Q 038217 528 LG-----TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH-EGVAEEAAGALALIVRQPI---GAAAVGEEEM 598 (715)
Q Consensus 528 ~~-----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~-~~~~~~al~~L~~La~~~e---~~~~i~~~g~ 598 (715)
.+ ..+..++-..+|+.+...+.|+.+++...++....-+++. ......++.+|-.....++ ++..+++..|
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 11 1355677888888888999999999999888877766763 3556778899987766655 5556677777
Q ss_pred cHHHHHH-HhhcC---------ChHHHHHHHHHHHHHHhcC
Q 038217 599 AVTGLVG-MMRCG---------TPRGKENAVAALLELCRSG 629 (715)
Q Consensus 599 ~I~~Lv~-lL~~~---------s~~~ke~A~~~L~~L~~~~ 629 (715)
+..+.. .++.. ....-|+-+.+|+++-.+.
T Consensus 363 -LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 363 -LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred -HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 777776 44322 2344678888888887654
No 111
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.09 E-value=0.0002 Score=67.96 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.|.|-||.+.++.||...|||.||..|..+-++. ...|-.|+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 4899999999999999999999999999988887 678999987553
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.06 E-value=0.0021 Score=54.57 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=69.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 392 AELLIQQL-ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 392 i~~Lv~~L-~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
|+.|++.| ++.++..+..|+..|..+- ...++|.|+.+++++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889999 7889999999988887332 1145999999999999999999999999872
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATL 499 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 499 (715)
...+++.|.+++.++.+..+|..|+.+|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 4568899999998874666788888776
No 113
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.02 E-value=0.003 Score=53.65 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=69.0
Q ss_pred hHHHHHhh-ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 434 IPHLRNLL-STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 434 i~~Lv~lL-~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
||.|++.| +++++.++..|+.+|.++ . ...+++.|+.+++++ +..+|..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~-~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i---------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------G-DPEAIPALIELLKDE-DPMVRRAAARALGRI---------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------T-HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------C-CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHh----------
Confidence 68899988 889999999999999843 2 446789999999887 999999999999877
Q ss_pred hcccCcHHHHHHHhhcCCh-hHHHHHHHHH
Q 038217 513 ADESGAVEALATLLRLGTP-RGKKDAVTAL 541 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL 541 (715)
+. ..+++.|.+++.+++. ..+..|+.+|
T Consensus 59 ~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 GD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 23 6689999999987654 4477787776
No 114
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.068 Score=60.90 Aligned_cols=256 Identities=15% Similarity=0.151 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
-+...+.|+++|..+++.++..|+..|.-|++.||.|...+ -|.+.++|.+ .+-=+...-+....+|+-.+..
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR- 252 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR- 252 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch-
Confidence 34577888999998899999999999999998888876544 3677777754 3333445556667777665542
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH--HhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLF--SLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~--~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
+ ..-.+++|..++.+..-+.+...+..++- +++... ++-..| .-++..|-.++.+.++..+=.++.++..
T Consensus 253 --L--gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 253 --L--GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred --h--hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 2 24467888888887533444444554443 333322 333333 2367777777877888888888888887
Q ss_pred hhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHH-hhcCChHHHHHHHH
Q 038217 544 LSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGM-MRCGTPRGKENAVA 620 (715)
Q Consensus 544 Ls~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~l-L~~~s~~~ke~A~~ 620 (715)
+... +..+|.+ .-..+++.|. |+.++-.|+..|..+.+ .++-.+|+ ..|+.. ........|..-+.
T Consensus 326 I~kt---Hp~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIV------k~LM~~~~~ae~t~yrdell~ 394 (877)
T KOG1059|consen 326 ILKT---HPKAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIV------KTLMKHVEKAEGTNYRDELLT 394 (877)
T ss_pred Hhhh---CHHHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHH------HHHHHHHHhccchhHHHHHHH
Confidence 7652 2233333 2445677885 67999999999998864 45555554 355553 33322355666666
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQ 670 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~ 670 (715)
-+..+|+.+.-.....+-. .+..|++|.. .|+.++..-|..++.+.-
T Consensus 395 ~II~iCS~snY~~ItdFEW---YlsVlveLa~l~~~~~G~~I~eQi~Dv~i 442 (877)
T KOG1059|consen 395 RIISICSQSNYQYITDFEW---YLSVLVELARLEGTRHGSLIAEQIIDVAI 442 (877)
T ss_pred HHHHHhhhhhhhhhhhHHH---HHHHHHHHHhccccchhhHHHHHHHHHhe
Confidence 6678888763333333322 3677777776 457777777777666543
No 115
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.00 E-value=0.017 Score=54.60 Aligned_cols=127 Identities=15% Similarity=0.176 Sum_probs=99.1
Q ss_pred HHhcccCcHHHHHHHhhcCCh------hHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC----ChhHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLRLGTP------RGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG----HEGVAEEAAGAL 580 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L 580 (715)
...+ .||+..|++++.++.. .....++.++..|-.+.-.-...++...|..++..+. |..+...|+++|
T Consensus 6 EFI~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFIS-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHh-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3444 6899999999998773 6677888898888776654555666677888888884 678999999999
Q ss_pred HHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 581 ALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 581 ~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
.+++.++...-..+....-++.|+..|+.+++..+.+|++.+-.|....++.-++.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999877765554444544999999999999999999999998888777665444443
No 116
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.99 E-value=0.011 Score=60.05 Aligned_cols=182 Identities=17% Similarity=0.134 Sum_probs=114.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--hhhHHHHHHc--CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhc
Q 038217 398 QLANGSPRAKTVAAREIRLLAKTG--KENRAFIAKA--GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473 (715)
Q Consensus 398 ~L~s~~~~~~~~A~~~L~~La~~~--~~~r~~i~~~--G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~ 473 (715)
.-.+.+|+.+.+|+..|+.+...+ ......+.+. ..+..++..+.+....+...|+.++..|+..-.+.-.-. ..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 345789999999999999999887 3444444432 566778888887778899999999999987654432222 35
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc-cHH
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NCV 552 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~-n~~ 552 (715)
..++.|++.+.++ ..-.++.|..+|..+...-.+...+ .++.+...+.+.++..+..++..|..+..... +..
T Consensus 94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 6788899998887 7889999999999987754422222 14566667777889999999999988865433 111
Q ss_pred HHHH----hCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 553 RMIE----AGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 553 ~iv~----aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
.+-. ..+++.+...+. +++++..|-.++..+..+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 235677777776 568999999999888553
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.99 E-value=0.056 Score=59.79 Aligned_cols=219 Identities=16% Similarity=0.025 Sum_probs=116.9
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
..++.|+..|. ..+.+....++..+. ..+++ .++..|+..|.+.+..++..++.+|..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGW---------- 112 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhc----------
Confidence 35667777774 444555444333321 11111 126677777777777777777777653
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
|. ..++.+.|+.+|++. +..++..++.++.. .. ....+.|..+|++.++.++..|+.+|..|-.
T Consensus 113 i~-~~~a~~~L~~~L~~~-~p~vR~aal~al~~----------r~--~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 113 LG-GRQAEPWLEPLLAAS-EPPGRAIGLAALGA----------HR--HDPGPALEAALTHEDALVRAAALRALGELPR-- 176 (410)
T ss_pred CC-chHHHHHHHHHhcCC-ChHHHHHHHHHHHh----------hc--cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence 22 455666677777665 66666655555444 11 2345567777766667777777777665432
Q ss_pred ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhh----hCC-----------------cHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGE----EEM-----------------AVTGLVG 605 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~----~g~-----------------~I~~Lv~ 605 (715)
..+++.|...+. ++.++..|+..|..+-. ++....+.. .|. .++.|..
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 234444555554 45666666666655522 222222111 111 1333333
Q ss_pred HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 606 MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 606 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+++. +..++.++.+|..+- . ...++.|+..+.+. ..++.|...++.+..
T Consensus 248 ll~d--~~vr~~a~~AlG~lg------------~-p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 248 LLQA--AATRREALRAVGLVG------------D-VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred HhcC--hhhHHHHHHHHHHcC------------C-cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 3332 223444433333211 1 33577777777544 488899888888765
No 118
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00032 Score=71.17 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=47.6
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHH
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIV 352 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~ 352 (715)
.|.|-||.+.+.+||...|||+||..|-.+.++. ...|++|++.... .+.+...|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g-~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG-SFNVAKELLVSLK 300 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc-ccchHHHHHHHHH
Confidence 4799999999999999999999999999999887 6789999986643 3444444444333
No 119
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.97 E-value=0.013 Score=55.20 Aligned_cols=92 Identities=13% Similarity=0.264 Sum_probs=76.2
Q ss_pred ccchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHH
Q 038217 53 FFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQ 132 (715)
Q Consensus 53 ~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~ 132 (715)
..+|..+.+|..-+..|.|+++||...+..++.+-..-++.|...|++++.|++.|++.+ -|=++....+..+.+++..
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~ 108 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEE 108 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHH
Confidence 455777888889999999999999987765555557789999999999999999999885 4566688889999999999
Q ss_pred HHHHHhcc-CCCCc
Q 038217 133 EISTLLDV-FPADD 145 (715)
Q Consensus 133 ~l~~~L~~-lp~~~ 145 (715)
+|.+.++. +|+..
T Consensus 109 ~l~~f~~v~~q~~~ 122 (147)
T PF05659_consen 109 SLRRFIQVDLQLHQ 122 (147)
T ss_pred HHHHHhcchhHHHH
Confidence 99999885 45433
No 120
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.039 Score=62.11 Aligned_cols=270 Identities=16% Similarity=0.154 Sum_probs=165.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHH-HHHHH----hhhhcC---
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN-SVTAM----LNLSIY--- 462 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~-A~~aL----~nLs~~--- 462 (715)
..+.+.+.+.+.....+..+.+.+..+.+++ .-..+.+.+++..|-............. +.-+. .+|...
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EP 212 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEP 212 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCc
Confidence 4566667777777778888888888877543 3445556677777777766543322221 11111 111110
Q ss_pred -----------------chhhhh-------hh--hhcCcHH----HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 463 -----------------DKNKSR-------IM--DEEGCLG----SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 463 -----------------~~nk~~-------I~--~~~g~i~----~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
+..|.. |+ -...+++ .++.-+... .+..+..++..|..++......-..
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHH
Confidence 011111 00 0122222 222222222 4566777777777777666655556
Q ss_pred hcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChh-HHHHHHHHHHHHhCCcchHH
Q 038217 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEG-VAEEAAGALALIVRQPIGAA 591 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~-~~~~al~~L~~La~~~e~~~ 591 (715)
.. +..||.|.+.|.+..+..++.+..+|.+++.--+|... .-.+|.|+..+.|+. -..+++..|..-.- .
T Consensus 292 ~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF-----V 362 (569)
T KOG1242|consen 292 CL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPECLDSLGATTF-----V 362 (569)
T ss_pred HH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHHHHHhhcceee-----e
Confidence 55 78999999999988899999999999999987776651 135888999998874 55566555543211 1
Q ss_pred HHhhhCCcHHHHHHHhhc----CChHHHHHHHHHHHHHHhcCC-HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 038217 592 AVGEEEMAVTGLVGMMRC----GTPRGKENAVAALLELCRSGG-ASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL 666 (715)
+-++... +..++.+|++ .+...++.++.+.+|+|..-+ +....... ..++|.|...+.+..|.+|.-|+..|
T Consensus 363 ~~V~~ps-LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 363 AEVDAPS-LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred eeecchh-HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 1233355 6666666665 366778999999999998752 22222222 23578888888888899998888777
Q ss_pred -HHHHHhhhh
Q 038217 667 -RVFQRCENA 675 (715)
Q Consensus 667 -~~l~~~~~~ 675 (715)
.++++..+.
T Consensus 440 ~~l~e~~g~~ 449 (569)
T KOG1242|consen 440 GALLERLGEV 449 (569)
T ss_pred HHHHHHHHhh
Confidence 555544433
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.90 E-value=0.013 Score=59.54 Aligned_cols=185 Identities=17% Similarity=0.115 Sum_probs=115.2
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---hhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCCh
Q 038217 485 FGLTTEARENAAATLFSLSAVH---EYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAV 560 (715)
Q Consensus 485 ~~~~~e~~~~Aa~~L~~Ls~~~---~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v 560 (715)
++.+.+.|..|+..|..+.... ++...+.. -...+..+...+.+....+.+.|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3348999999999999887655 33333332 1244556666676666778899999999998654433222233578
Q ss_pred HHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC---HHHHH
Q 038217 561 TALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG---ASATE 635 (715)
Q Consensus 561 ~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~---~~~~~ 635 (715)
|.|+..+++ .-+.+.|..+|..++..-.....+. ++.+...+.+.++..|..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 899999874 4788889999999876433111111 3555556777899999999999988876654 11111
Q ss_pred HHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 636 RVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 636 ~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
...- ..+++.+...+.++++.+|..|..++..|....+.
T Consensus 172 ~~~~-~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFL-KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHH-HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1101 23688899999999999999999999998876654
No 122
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.84 E-value=0.0007 Score=73.22 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh----CCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE----GHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~~~ 339 (715)
-..+..|.+|.+.-.||+..+|.|+|||.||.+|... .+-+||.|..+++..
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456789999999999999999999999999998874 357999999888665
No 123
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00065 Score=71.84 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=39.4
Q ss_pred CcCccCcccccC--ce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRD--PV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~d--Pv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.|.||+|-+.+ -+ +++|+|.|...||..|+..-...||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 699999999874 33 569999999999999999865679999986543
No 124
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0007 Score=70.40 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=40.1
Q ss_pred CCCCcCccCcccccC-------------ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 289 PKDFCCPIMLDLMRD-------------PVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d-------------Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
.++..|.||++-|.. |--++|||.+.-+|+..|+.. ..+||.|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 447899999987543 367899999999999999998 88999999885
No 125
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.048 Score=60.45 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=157.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHH-HHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFI-AKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
...-|..+|+..+.+++..+-..|..+..+ ..+.... --...++.++.-+.++++.+|..|++.+.....-..+.-..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 455677888888888875555444444432 1222222 22357889999999999999999999888775544433333
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHH---HHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAA---TLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~---~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
. -.|.+..+...+.....+..++.|.. .|..+.+....+..|-- ...|..|.+.+.++..+++..++.-+..|-.
T Consensus 288 ~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 288 Y-LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred h-hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 3 57777888877766423334443332 34444444434433322 4578888899988889999999999988887
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
...|....-....++.|+.-|+ ++.++..++.+|+++|..+....- -. ++..|+++......-.+..+.-++..
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~-fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RK-FLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HH-HHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 7777766666788999999997 458999999999999987655411 11 25566666665566667788888888
Q ss_pred HHhcC
Q 038217 625 LCRSG 629 (715)
Q Consensus 625 L~~~~ 629 (715)
||..-
T Consensus 442 lC~lL 446 (675)
T KOG0212|consen 442 LCLLL 446 (675)
T ss_pred HHHHh
Confidence 88754
No 126
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.65 E-value=0.09 Score=54.57 Aligned_cols=228 Identities=11% Similarity=0.110 Sum_probs=156.9
Q ss_pred hhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhc--CCCHHHHHHHHHHHHHhccCchhHHHHhcccC
Q 038217 440 LLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRF--GLTTEARENAAATLFSLSAVHEYKKKIADESG 517 (715)
Q Consensus 440 lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~--~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g 517 (715)
++..=++-++.-|+.+|.+|....+.|..+-.+.-.-..++.++++ | ..+.+.+.+-+++-|+-+......|-....
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg-~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG-VKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333455678889999999999988877665355667788888876 4 578899999999999998887766655457
Q ss_pred cHHHHHHHhhcCC-hhHHHHHHHHHHHhhc-CC-ccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHHHHH------
Q 038217 518 AVEALATLLRLGT-PRGKKDAVTALFNLST-HT-DNCVRMIEAGAVTALVGALG-----HEGVAEEAAGALALI------ 583 (715)
Q Consensus 518 ~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~-~~-~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L~~L------ 583 (715)
.|..|+.+++... +.+...++..+.|++. .+ +....+.-.|-+.+-++.|. |++++..--.+=..|
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 8888888887643 4667788889999987 22 35555666676666677763 444432211111111
Q ss_pred -hC------------------------CcchHHHHhhhC-CcHHHHHHHhhcCChH-HHHHHHHHHHHHHhcCCHHHHHH
Q 038217 584 -VR------------------------QPIGAAAVGEEE-MAVTGLVGMMRCGTPR-GKENAVAALLELCRSGGASATER 636 (715)
Q Consensus 584 -a~------------------------~~e~~~~i~~~g-~~I~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~~ 636 (715)
+. ..++...+.+.+ ..+..|.++++...+. .--.|+.=+.++.+..| +....
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~v 394 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAV 394 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHH
Confidence 10 023334443333 2356777788876555 34566677778877764 55666
Q ss_pred HHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 637 VLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 637 l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
+.+ .|+=..+++|+.+.++++|--|...++.+-
T Consensus 395 l~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSK-YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 666 999999999999999999999988877654
No 127
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.63 E-value=0.17 Score=55.98 Aligned_cols=57 Identities=23% Similarity=0.110 Sum_probs=34.9
Q ss_pred ChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 559 AVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 559 ~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
+++.|..+++++.++..++.+|..+- .... ++.|+..+. .+..+..|-.++..+..-
T Consensus 241 a~~~L~~ll~d~~vr~~a~~AlG~lg----------~p~a-v~~L~~~l~--d~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 241 AQAWLRELLQAAATRREALRAVGLVG----------DVEA-APWCLEAMR--EPPWARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHcC----------Ccch-HHHHHHHhc--CcHHHHHHHHHHHHhhCC
Confidence 45556666665556666666655542 1223 777777775 344777888887777653
No 128
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.27 Score=58.16 Aligned_cols=203 Identities=20% Similarity=0.252 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK 481 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~ 481 (715)
+.+..+.-|+..+..+. .+.+.-..+++.|.+..|+.+|.+ -+..++.++.+|+.|+.+.+--..-+ +.|++.-|.+
T Consensus 1784 ~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~-~hg~l~yil~ 1860 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL-EHGGLMYILS 1860 (2235)
T ss_pred CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH-hcCchhhhhH
Confidence 45667777888776666 356677778888988888988865 57788889999999988877644444 5788777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCc-------------------------------------------------------
Q 038217 482 VLRFGLTTEARENAAATLFSLSAVH------------------------------------------------------- 506 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~~------------------------------------------------------- 506 (715)
++-...+...|..|+..|..|..+.
T Consensus 1861 ~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~ 1940 (2235)
T KOG1789|consen 1861 ILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGI 1940 (2235)
T ss_pred HHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHH
Confidence 7755435555666666665554322
Q ss_pred --------------------------------------------------------------------------------
Q 038217 507 -------------------------------------------------------------------------------- 506 (715)
Q Consensus 507 -------------------------------------------------------------------------------- 506 (715)
T Consensus 1941 i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh 2020 (2235)
T KOG1789|consen 1941 IDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH 2020 (2235)
T ss_pred HHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc
Confidence
Q ss_pred -----------------hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-
Q 038217 507 -----------------EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG- 568 (715)
Q Consensus 507 -----------------~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~- 568 (715)
.....++. .|.+|.++.-+.-.+...-+.|+..|..|+.+.-.+..|....++..++..|+
T Consensus 2021 ~l~lLt~A~V~L~r~hP~LADqip~-LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK 2099 (2235)
T KOG1789|consen 2021 ELDLLTKAFVELVRHHPNLADQLPS-LGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK 2099 (2235)
T ss_pred hhHHHHHHHHHHHHhCcchhhhCCC-ccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh
Confidence 11111111 23333333333333333446788899999998888889998888888998885
Q ss_pred ChhHHHHHHHHHHHHhC--CcchHHHHhhhCCcHHHHHHHhhc
Q 038217 569 HEGVAEEAAGALALIVR--QPIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 569 ~~~~~~~al~~L~~La~--~~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
..+..-.|+.+|..+.. ..+--.+.++.|- |+.|+++|..
T Consensus 2100 ~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL-vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2100 QPSLMGLAAEALKRLMKRNTGELVAQMLKCGL-VPYLLQLLDS 2141 (2235)
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHhccCc-HHHHHHHhcc
Confidence 55777788888887754 2334455667777 9999999985
No 129
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0011 Score=67.30 Aligned_cols=47 Identities=13% Similarity=0.404 Sum_probs=39.1
Q ss_pred CcCccCccccc--Cce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMR--DPV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~--dPv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-|.||++-+. |-+ .++|.|.|.+.|+.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999998774 444 459999999999999999767899999987754
No 130
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.39 Score=53.64 Aligned_cols=263 Identities=17% Similarity=0.132 Sum_probs=139.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh--
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR-- 468 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~-- 468 (715)
..++|-..|++--.-++.++++.+..++.+|- -..+. .-.|..|-.+|+++....+-.|+.+|..|+.....+..
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 45666666766667788999999988886651 11122 13567788889999999999999999999865443222
Q ss_pred ------hhhh---cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHHHHhcccCcHHHHHHHhhcCChhHHHHH
Q 038217 469 ------IMDE---EGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKKKIADESGAVEALATLLRLGTPRGKKDA 537 (715)
Q Consensus 469 ------I~~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A 537 (715)
++.+ .-...++..+|+.| +.+....-...+-+.-. .+..|..+. .++..|.-+. ++-+..-
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~i---da~rsLsl~F----p~k~~s~ 413 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIAI---DALRSLSLLF----PSKKLSY 413 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEeH---HHHHHHHhhC----cHHHHHH
Confidence 2211 12345566677777 65555544444444322 112222221 1233222221 1222222
Q ss_pred HHHHHHhhcCCc---cHHHHHHhCChHHHHHhhC-ChhHHHHHHHHHHHHhCCcch-HH--HHh----hh-------CCc
Q 038217 538 VTALFNLSTHTD---NCVRMIEAGAVTALVGALG-HEGVAEEAAGALALIVRQPIG-AA--AVG----EE-------EMA 599 (715)
Q Consensus 538 ~~aL~nLs~~~~---n~~~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~La~~~e~-~~--~i~----~~-------g~~ 599 (715)
+..|.+.-.+.+ .+..| |.++..+++ +++.++.|+..|+..-.+-+. +. .|+ +. |-.
T Consensus 414 l~FL~~~L~~eGg~eFK~~~-----Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~y 488 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYM-----VDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKY 488 (898)
T ss_pred HHHHHHHHHhcccchHHHHH-----HHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchH
Confidence 222222211110 11111 333444443 445555555544443222111 11 110 11 112
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
|..+..-+--.+.-+|..|+.+|..++.+-.+... . ..+...|-..+.+.++.++..|+-+|+.|+..+.
T Consensus 489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----~-~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da 558 (898)
T COG5240 489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----P-QSVENALKRCLNDQDDEVRDRASFLLRNMRLSDA 558 (898)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc----H-HHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhh
Confidence 33333311113567788999999777766533221 1 2345567778888899999999999999996543
No 131
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.3 Score=54.48 Aligned_cols=270 Identities=15% Similarity=0.118 Sum_probs=170.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH-HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIA-KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.|+.|-+.+..-++..|.-.+.=|..+-.. |+. ..+. -....+-|..+|+....+++..+-++|.+.-..-.++..
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3555555555555777777666666655432 222 1111 123456677788889999998888888776544344444
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHH---HHHHh
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDAVT---ALFNL 544 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~---aL~nL 544 (715)
-+.-...++.++.-+.+. .++.+..|..-|..............- +|.+..++.++.+..+ ..+..|.. .|..+
T Consensus 245 s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~-s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYL-SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhh-hhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 432456788888888887 889998888888777654443333333 6777777777765433 23333322 24444
Q ss_pred hcCCccHHHHHHh-CChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 545 STHTDNCVRMIEA-GAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 545 s~~~~n~~~iv~a-G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
++....+.. ++. ..+..|.+.+++ .+.+..++..+..|-....|.-..-...- .+.|+.-|.+.|+.+-..++.+
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~i-f~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSI-FLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHH-HHHHHHhhcCchhHHHHHHHHH
Confidence 444433333 332 346777777763 37778888888888554445554445555 7889998888999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.++|...... ...+ ++..|+++....+.-....+.-++|.|..
T Consensus 401 la~i~~s~~~~---~~~~---fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 401 LASICSSSNSP---NLRK---FLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHhcCcccc---cHHH---HHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99999875321 1111 25557777777666666666666666654
No 132
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.44 Score=55.25 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=93.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhhcCCc---cHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 521 ALATLLRLGTPRGKKDAVTALFNLSTHTD---NCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 521 ~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~---n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
.++++|..++++........|..++.+.+ |....+=..+|..++.+..+.+++..|+.+|...-.++++-..-+.-+
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 45666777788888888888888887554 666666566788888777788999999999988766544322111111
Q ss_pred C----------cH----HHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHH
Q 038217 598 M----------AV----TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663 (715)
Q Consensus 598 ~----------~I----~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~ 663 (715)
+ ++ ..+++.|++.+..+|..|+..++.|...+ .++ .+ +..|+.++.+..+..|.-.+
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-~m------v~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-VM------VKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-HH------HHHHHHHHHhccHHHHHHHH
Confidence 1 01 35677777778888899988888887653 333 22 23377777777776664433
Q ss_pred -HHHHHHHH
Q 038217 664 -SLARVFQR 671 (715)
Q Consensus 664 -~lL~~l~~ 671 (715)
.+..+..+
T Consensus 407 s~I~~laEk 415 (866)
T KOG1062|consen 407 SKIAELAEK 415 (866)
T ss_pred HHHHHHHHh
Confidence 34444433
No 133
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.34 E-value=0.23 Score=53.58 Aligned_cols=162 Identities=24% Similarity=0.248 Sum_probs=102.6
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 511 (715)
-.++.++.+|.+.+..++..|...+..+ - ..-+++.+..+|... +..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~-~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~--------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------G-SEEAVPLLRELLSDE-DPRVRDAAADALGEL--------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------c-hHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc---------
Confidence 4678888888888888888888773332 2 556788888888887 778888777744433
Q ss_pred HhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHH-HHhCC---
Q 038217 512 IADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALA-LIVRQ--- 586 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~-~La~~--- 586 (715)
+. ..+++.|+.++.. .+..++..|+.+|..+-.. .++..++..+.+..... +...+. .+...
T Consensus 102 -~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~ 168 (335)
T COG1413 102 -GD-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS-AAAALDAALLDVRAA 168 (335)
T ss_pred -CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh-hhhhccchHHHHHHH
Confidence 22 5688888888884 6778888888888766432 23667777776432111 111110 00000
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
......+..... ++.+.+++......++..|..+|..+...
T Consensus 169 a~~~l~~~~~~~~-~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 169 AAEALGELGDPEA-IPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHcCChhh-hHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 001111112223 67788888877778888888888777765
No 134
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.30 E-value=0.0077 Score=43.05 Aligned_cols=40 Identities=38% Similarity=0.444 Sum_probs=35.4
Q ss_pred chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 506 HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 506 ~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
++++..+.+ .|+++.|++++.+++++.++.|+++|+||+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 346777878 9999999999998889999999999999973
No 135
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.15 Score=57.81 Aligned_cols=267 Identities=15% Similarity=0.118 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
...++.++...++.++..|..|+.++..+.-. .+...+.. ..+++.|..+-...+++++.+.+.+|..|......|-
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 45788999999999999999999998776643 23333333 2567777777778899999999999999877665433
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcc-cCcHHHHHHHh----------hc-CC-----
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADE-SGAVEALATLL----------RL-GT----- 530 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~-~g~I~~Lv~LL----------~~-~~----- 530 (715)
.=. -.++++-++..-+.. +.++-..|+.....++..+..+..++.. ...||.|+.-+ ++ +.
T Consensus 251 ~ph-l~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 251 VPH-LDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred ccc-hHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 222 356777777777666 8888899999999999888555555431 25677766532 20 00
Q ss_pred -------h---------------------------------hHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--
Q 038217 531 -------P---------------------------------RGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-- 568 (715)
Q Consensus 531 -------~---------------------------------~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-- 568 (715)
| ..++.++.+|--|+ .+.....++.++.+|+
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHH
Confidence 0 12233333322222 2223344555666553
Q ss_pred --Ch--hHHHHHHHHHHHHhCCcchHH-HHhhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038217 569 --HE--GVAEEAAGALALIVRQPIGAA-AVGEE-EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPA 642 (715)
Q Consensus 569 --~~--~~~~~al~~L~~La~~~e~~~-~i~~~-g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g 642 (715)
.+ .+++.++-+|..+| ||.. -+..+ +..||.|+.+|.+..+-+|.-.+++|...+..--.+-...... .
T Consensus 402 L~~~~W~vrEagvLAlGAIA---EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--p 476 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIA---EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--P 476 (885)
T ss_pred cCcchhhhhhhhHHHHHHHH---HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--H
Confidence 33 56777777777776 3332 22221 2357888899998999999998888866554321111111111 1
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 643 LVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 643 ~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
++..|+.-+-+++.++++.|-+..-.+.+
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 34556666678899999999888777765
No 136
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.22 E-value=0.0019 Score=69.21 Aligned_cols=49 Identities=16% Similarity=0.446 Sum_probs=40.2
Q ss_pred CCCCCCCcCccCcccccCce----eCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPV----IISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv----~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
..+-+-.+||+|++-|.+-| ++.|.|+|-..|+.+|+. .+||+||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 34555669999999998877 348999999999999984 58999987654
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.21 E-value=0.089 Score=49.87 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=99.5
Q ss_pred HHHHHcCChHHHHHhhccCC------HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCC-CHHHHHHHHHH
Q 038217 426 AFIAKAGAIPHLRNLLSTHN------PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL-TTEARENAAAT 498 (715)
Q Consensus 426 ~~i~~~G~i~~Lv~lL~s~d------~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~ 498 (715)
..+...||+..|++++.++. .++..++++++..|-.+.----... ....|..++..+.... +..+.+.|+++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHH
Confidence 35677899999999998765 4788899999999988765445566 7788999999997653 57889999999
Q ss_pred HHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 499 LFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 499 L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
|.++..+.......+...=-++.|+..|+..+++.+.+|+..+-.|-.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999888867766656789999999999889999999988887765
No 138
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.20 E-value=0.0022 Score=67.86 Aligned_cols=36 Identities=14% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~ 324 (715)
++++.||||...+++|++++|||..|+.|-..-+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 579999999999999999999999999999866554
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.11 E-value=0.86 Score=49.12 Aligned_cols=184 Identities=24% Similarity=0.265 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..+..++..+.+.+...+..|+..+..+. ..-++|.|..+|.+.++.++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 35678888888888888888887743322 2346899999999999999999998665542
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhH------------HHHH
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRG------------KKDA 537 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~------------~~~A 537 (715)
...+++.++..|....+..+|..|+.+|..+-. ..++..|+.++.+..... +..+
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 567889999999853388999999999988754 455888888887655322 2222
Q ss_pred HHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHH
Q 038217 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~k 615 (715)
+.+|..+ -..-.++.+..++.+ ..++..+..+|..+.... ... .+.+...+...+...+
T Consensus 170 ~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~-~~~l~~~~~~~~~~vr 230 (335)
T COG1413 170 AEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEA-ADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhH-HHHHHHHhcCCCHHHH
Confidence 2222211 111356777788763 468888888888876543 222 4666667766677777
Q ss_pred HHHHHHHHHH
Q 038217 616 ENAVAALLEL 625 (715)
Q Consensus 616 e~A~~~L~~L 625 (715)
..++..|..+
T Consensus 231 ~~~~~~l~~~ 240 (335)
T COG1413 231 KAALLALGEI 240 (335)
T ss_pred HHHHHHhccc
Confidence 6666555443
No 140
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0034 Score=64.76 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=45.5
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..+++.-.||+|+.--.+|..+ .+|..||..||..+... ...||+|+.|...
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 4567888999999999999877 67999999999999996 8899999987654
No 141
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=0.17 Score=60.02 Aligned_cols=220 Identities=16% Similarity=0.102 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhh-hhcCchhhhhhhhhcCcHHHHHHHHhc
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLN-LSIYDKNKSRIMDEEGCLGSIVKVLRF 485 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~n-Ls~~~~nk~~I~~~~g~i~~Lv~lL~~ 485 (715)
+.+|+.-|..+..-.+=.-..-..-|+.|.+++||.+...+++---+-+=.+ |+.++..+..++ +.++-.-++.+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv-Ke~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV-KENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH-hccCceeEEEEecC
Confidence 4455555555543333222222345999999999999988887765555544 577777788888 77777777777766
Q ss_pred C--CCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcC-ChhHHHHHHHHHHHhhc-CCccHHHHHHhCCh
Q 038217 486 G--LTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLST-HTDNCVRMIEAGAV 560 (715)
Q Consensus 486 ~--~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v 560 (715)
+ .+.|-|..|+-+|..+..+-. ......+ .+.|-..+..|+++ .+-.+.-.+-+|..|-. ++++|-.=++.++.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 2 245888888888888877644 3444444 67888778888775 46677888888888876 46677777899999
Q ss_pred HHHHHhhCCh--hHHHHHHHHHHHHhCC-----cchHHHH---h--------hhCCcHH----HHHHHhhcCChHHHHHH
Q 038217 561 TALVGALGHE--GVAEEAAGALALIVRQ-----PIGAAAV---G--------EEEMAVT----GLVGMMRCGTPRGKENA 618 (715)
Q Consensus 561 ~~Lv~lL~~~--~~~~~al~~L~~La~~-----~e~~~~i---~--------~~g~~I~----~Lv~lL~~~s~~~ke~A 618 (715)
..|..+|+|+ +++..|+-+|..+.++ ++....+ + -... +. .++.++..|++-.+..-
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~-i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL-IIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH-HHhhHHHHHHHHhccchHHHHHH
Confidence 9999999864 8999999999887653 2322222 1 1112 33 66777888999888777
Q ss_pred HHHHHHHHhcC
Q 038217 619 VAALLELCRSG 629 (715)
Q Consensus 619 ~~~L~~L~~~~ 629 (715)
+.+|..+..+.
T Consensus 724 ~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 724 VVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHhh
Confidence 77787777654
No 142
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.04 E-value=0.36 Score=48.63 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLG 477 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~ 477 (715)
.-.+.|+.-++-++. +++.|..+.++..=-.|-.+|.. +..-++-.+++++..|...++. -..+. ..++||
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-TTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-HhhhHH
Confidence 345778888888886 48999999988766566777754 3567889999999999876643 33344 799999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHH--------HHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA--------TLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv--------~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
..++.+..| +...+..|+-++..+-.+|..-..|+....-+..+. .+.+.++++..|.++.+..+|+.++.
T Consensus 172 lCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999 999999999999988888876555554333222222 23345778999999999999999886
Q ss_pred cHHHHH
Q 038217 550 NCVRMI 555 (715)
Q Consensus 550 n~~~iv 555 (715)
.|..+.
T Consensus 251 ar~aL~ 256 (293)
T KOG3036|consen 251 ARAALR 256 (293)
T ss_pred HHHHHH
Confidence 665543
No 143
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0016 Score=65.15 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=44.8
Q ss_pred CCCCcCccCcccccCce----------eCCCccHhhHHHHHHHHHhC-CCCCCCCccccccCCCCcc
Q 038217 289 PKDFCCPIMLDLMRDPV----------IISTGQTYDRRSIARWMEEG-HRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv----------~~~cghtfcr~cI~~w~~~~-~~~CP~c~~~l~~~~l~pn 344 (715)
.++-.|.+|++-+.+.+ .++|+|.|...||..|+.-| ..+||.|++..+...+..|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 34678999998776555 66999999999999999865 5799999988766655444
No 144
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.21 Score=57.95 Aligned_cols=224 Identities=18% Similarity=0.134 Sum_probs=150.8
Q ss_pred ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHh-hhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 038217 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAML-NLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATL 499 (715)
Q Consensus 421 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~-nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 499 (715)
...-|...++.|+...|+++.........-++..+|. .++..... ...+++++...+.+....-....++-++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3566667788899999999998888888888888887 22211110 2345666666665531222345678889
Q ss_pred HHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHH-HHHh-CChHHHHHhhC--ChhHHH
Q 038217 500 FSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR-MIEA-GAVTALVGALG--HEGVAE 574 (715)
Q Consensus 500 ~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~-iv~a-G~v~~Lv~lL~--~~~~~~ 574 (715)
.||++.++ .|..|.. .-+++.+-.++..+++..+..++..+.||..++..-.+ +++. ...+.....+. ++....
T Consensus 567 tnLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILK-EKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHH-HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 99987655 6777776 55566666667778899999999999999988875444 3442 33444444443 455666
Q ss_pred HHHHHHHHHhCCcchHHH-HhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc
Q 038217 575 EAAGALALIVRQPIGAAA-VGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT 653 (715)
Q Consensus 575 ~al~~L~~La~~~e~~~~-i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s 653 (715)
.+.+++..++...++.-. +.+.-.+...++.++.++++.+|...+.+.+++... +.+....+.. ...++.+..+..-
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~-~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFE-TEVMELLSGLQKL 723 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhcc-chHHHHHHHHHHh
Confidence 677777766655443333 444333378899999999999999999999885544 3677777776 6666666665544
No 145
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0026 Score=47.66 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=39.8
Q ss_pred CcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.|.||.+-..|.|+..|||- .|..|-.+.++.++..||.|+.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 479999999999999999995 5899988888878899999997753
No 146
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.71 Score=52.83 Aligned_cols=262 Identities=15% Similarity=0.115 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC--HHHHHHHHHHHhhhhcCchh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN--PVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d--~~~~~~A~~aL~nLs~~~~n 465 (715)
++..+..+...|.|.++-.++-|+..+.++.. .++++.+.. =|| ++|-+++ .-++..|+.+|+.|-...
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-- 179 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-- 179 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC--
Confidence 45567777888888888889999999988774 466666553 244 6776654 346666666666664432
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcC-------------C
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLG-------------T 530 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~-------------~ 530 (715)
-..+- ..+....++++|... +..+...+...+..|+... +++....- ++..|.++.... .
T Consensus 180 pDl~~-~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~p~~yk~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~ 254 (938)
T KOG1077|consen 180 PDLVN-PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKNPESYKTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPA 254 (938)
T ss_pred ccccC-hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcCCHHHhhhHHH---HHHHHHHHHhhcccchhhceeecCCC
Confidence 23333 457888999999887 6777788888888887643 35555533 455555554321 1
Q ss_pred hhHHHHHHHHHHHhhcCC--ccHHHHHHhCChHHHHHhhCC----h-----hHHHHHHHHHHHHhCCcc-hHHHHhhhCC
Q 038217 531 PRGKKDAVTALFNLSTHT--DNCVRMIEAGAVTALVGALGH----E-----GVAEEAAGALALIVRQPI-GAAAVGEEEM 598 (715)
Q Consensus 531 ~~~~~~A~~aL~nLs~~~--~n~~~iv~aG~v~~Lv~lL~~----~-----~~~~~al~~L~~La~~~e-~~~~i~~~g~ 598 (715)
|=.....+.+|.+.=.-. .++.++.+ +...++...++ . ..+...+--.-+|+.+-+ ..+.+.+ .
T Consensus 255 PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~ 330 (938)
T KOG1077|consen 255 PWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--A 330 (938)
T ss_pred hHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--H
Confidence 224445555555552222 23444332 22333333321 1 112222222334444433 3333333 2
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhh
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+..|..++.+.....|-.|+..+..||... ....++.. . .+.+...++ ..+..++++|..||-.|.+..
T Consensus 331 -~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~-h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 331 -VNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKK-H--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred -HHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHH-H--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 677888888878888888888888888773 34455544 3 666777777 557788888888888887643
No 147
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0045 Score=61.16 Aligned_cols=54 Identities=15% Similarity=0.442 Sum_probs=46.7
Q ss_pred CCCCcCccCcccccCce---eC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 289 PKDFCCPIMLDLMRDPV---II-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv---~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
..-|.||+|.+.+.+.+ .+ +|||.+|..|.++.+.. ...||+|+.++..+++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 36799999999998865 22 99999999999998776 889999999999988765
No 148
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.43 Score=53.98 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=132.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.++.-+....|..+..++..|..+++.. .-........+||.|...|-+.++++++.+..+|.+++...+|....
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~- 332 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ- 332 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-
Confidence 5566666666568889999999999888764 34445556689999999999999999999999999998887776622
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHH----hhcCChhHHHHHHHHHHHhhc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATL----LRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~L----L~~~~~~~~~~A~~aL~nLs~ 546 (715)
-.+|.|++-+..+ +..+. .++..|....-. .. +. .-.+..++-+ +.+.+...++.++.++.|+|.
T Consensus 333 ---~~ip~Lld~l~dp-~~~~~----e~~~~L~~ttFV-~~-V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 333 ---KIIPTLLDALADP-SCYTP----ECLDSLGATTFV-AE-VD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred ---HHHHHHHHHhcCc-ccchH----HHHHhhcceeee-ee-ec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 3678888888775 32222 223333221100 00 01 2233333444 444566788999999999998
Q ss_pred CCccHHHHHHhCChHHHHHhhC------ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG------HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAV 619 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~------~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~ 619 (715)
--++...+.. .++.|+.-|+ .++++..+..+|..+-..- |... ..+. +|.+.+.+.. .+...+.-++
T Consensus 402 LveDp~~lap--fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~-g~~~--f~d~-~p~l~e~~~~~k~~~~~~g~a 475 (569)
T KOG1242|consen 402 LVEDPKDLAP--FLPSLLPGLKENLDDAVPEVRAVAARALGALLERL-GEVS--FDDL-IPELSETLTSEKSLVDRSGAA 475 (569)
T ss_pred hhcCHHHHhh--hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH-Hhhc--cccc-ccHHHHhhccchhhhhhHHHh
Confidence 6544444322 2333433332 4678888887776553211 1111 1233 5666665543 2333344444
Q ss_pred HHHHHHHhcC
Q 038217 620 AALLELCRSG 629 (715)
Q Consensus 620 ~~L~~L~~~~ 629 (715)
..|..++.+.
T Consensus 476 q~l~evl~~~ 485 (569)
T KOG1242|consen 476 QDLSEVLAGL 485 (569)
T ss_pred hhHHHHHhcc
Confidence 4455555444
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.74 E-value=0.034 Score=59.58 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=46.3
Q ss_pred CcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 292 FCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
+.|.|++++.++||+- .+||.|+|.-|++++.+ ...||.+++++..+++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4799999999999988 69999999999999998 789999999998877655
No 150
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.033 Score=61.33 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=167.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh--hh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN--KS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n--k~ 467 (715)
..++.|+..|+..+.-..--+...+.++.-.-...+..+.+.|+|..|+.++.++|..+|.+.+|.|..+--+.++ |-
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 4556777777765544455566777777655556788899999999999999999999999999999999876644 55
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch----hHHH---HhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE----YKKK---IADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~---I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
... ..-++..++++...+ ...+++....+|+|+..+.. .+.. +....-..+.|++.+...+|-.....+-.
T Consensus 511 ~~L-akig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yi 588 (743)
T COG5369 511 KFL-AKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYI 588 (743)
T ss_pred hhH-HhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence 666 678899999999887 88999999999999987432 1211 11111245567777777777666677888
Q ss_pred HHHhhcCCccHHHHHHh--CChHHHHHhh----CC----h-hHHHH----HHHHHHHHhCCcchHHHHhhhCCcHHHHHH
Q 038217 541 LFNLSTHTDNCVRMIEA--GAVTALVGAL----GH----E-GVAEE----AAGALALIVRQPIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a--G~v~~Lv~lL----~~----~-~~~~~----al~~L~~La~~~e~~~~i~~~g~~I~~Lv~ 605 (715)
|.+++.++++...++.. ..+..+-..| ++ + ..-++ -.....++..+ +++ ...++.
T Consensus 589 lv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~---------~d~-f~r~~~ 658 (743)
T COG5369 589 LVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN---------SDK-FKRLVL 658 (743)
T ss_pred HHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc---------ccc-ccccee
Confidence 99999888887776633 3333332222 11 0 00000 00111111111 111 111111
Q ss_pred ------Hhhc----CChHHHHHHHHHHHHHHhcC--------CHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 606 ------MMRC----GTPRGKENAVAALLELCRSG--------GASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 606 ------lL~~----~s~~~ke~A~~~L~~L~~~~--------~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.+.. .+.+.--...+...++.... ..+.++.+.. .|+-+-|+.+....++.+++|+..+|.
T Consensus 659 ~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~-~G~~e~l~k~q~~~Sl~vrek~~taL~ 737 (743)
T COG5369 659 TTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCA-NGIREWLVKIQAKDSLIVREKIGTALE 737 (743)
T ss_pred cCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHH-ccHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 1111 12222223333333322111 1245556665 888888888888889999999999888
Q ss_pred HHH
Q 038217 668 VFQ 670 (715)
Q Consensus 668 ~l~ 670 (715)
.++
T Consensus 738 ~l~ 740 (743)
T COG5369 738 NLR 740 (743)
T ss_pred hhh
Confidence 775
No 151
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.62 E-value=2.8 Score=42.42 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=146.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHH-hhc------c-----CCHHHHHHHHHHHhh
Q 038217 392 AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRN-LLS------T-----HNPVAQENSVTAMLN 458 (715)
Q Consensus 392 i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~-lL~------s-----~d~~~~~~A~~aL~n 458 (715)
+..++-.|.++.. +..|+.+|..--+..++....+... |.+..|++ .+. . ....-..+|+..|.-
T Consensus 28 ~~~~i~~l~~~p~--rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 28 AYQLILSLVSPPT--REMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred hhhHHHHhhCCch--HHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 5666666665544 5667877777665555665555554 66665554 221 1 123445778888888
Q ss_pred hhcCchhhhhhhhhcCcHHHHHHHHhc----CCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChh
Q 038217 459 LSIYDKNKSRIMDEEGCLGSIVKVLRF----GLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPR 532 (715)
Q Consensus 459 Ls~~~~nk~~I~~~~g~i~~Lv~lL~~----~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~ 532 (715)
++.+++.|..+. .+-.---+-.+|.. ...+-.|..+++++..|..+++ .-..+.. .+.||..++.+..|++.
T Consensus 106 vASHpdTr~~FL-~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPlCLrime~GSel 183 (293)
T KOG3036|consen 106 VASHPDTRRAFL-RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPLCLRIMESGSEL 183 (293)
T ss_pred HhcCcchHHHHH-HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHHHHHHHhcccHH
Confidence 899999999998 55433333334432 2234578999999999988765 3333444 89999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHH----hCCh----HHHHHhh-C--ChhHHHHHHHHHHHHhCCcchHHHHhhhCC---
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIE----AGAV----TALVGAL-G--HEGVAEEAAGALALIVRQPIGAAAVGEEEM--- 598 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~----aG~v----~~Lv~lL-~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~--- 598 (715)
.+.-|..++..+-.++.+-..+.. .-+| ..++.-| + +..+..+.+.+..+|+.++..|.++...--
T Consensus 184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~L 263 (293)
T KOG3036|consen 184 SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQL 263 (293)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchh
Confidence 999999988888777764433332 1222 2233323 2 568889999999999999988888754211
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.=.....+++ .++..|..-...+.++|.
T Consensus 264 rd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 264 RDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred ccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 0012223343 344455444445555553
No 152
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.60 E-value=0.049 Score=47.73 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHH--hhcCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038217 572 VAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGM--MRCGTPRGKENAVAALLELCRSGGASATERV 637 (715)
Q Consensus 572 ~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~l--L~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 637 (715)
++...+.+|+||+. ++..+..+.+.|| |+.++.. +...+|-.+|.|+.++.+||.++ ++.++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n-~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN-PENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC-HHHHHHH
Confidence 35677899999987 5779999999999 9999984 45578999999999999999987 3444333
No 153
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.60 E-value=0.0071 Score=62.90 Aligned_cols=53 Identities=15% Similarity=0.463 Sum_probs=42.8
Q ss_pred CCCCCcCccCcccccC--c-eeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC
Q 038217 288 IPKDFCCPIMLDLMRD--P-VII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV 342 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~d--P-v~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~ 342 (715)
-...|.|||++..|.. + |.+ +|||+|+..+|.+.- ....||.|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4568999999999954 2 333 999999999999873 356799999999988754
No 154
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.093 Score=57.95 Aligned_cols=197 Identities=12% Similarity=0.021 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHHHHhcC
Q 038217 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFG 486 (715)
Q Consensus 408 ~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~lL~~~ 486 (715)
..++..|..+++.-...|.-+.+....++|+++|+.++..+.--+...++|+...- +-+..+. ..|.|..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL-~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFL-EKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHH-HhhHHHHHHHHhhcc
Confidence 44555666777666677888889999999999999877777777888899986544 4488888 999999999999877
Q ss_pred CCHHHHHHHHHHHHHhccCchhH--HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-cc---HHHHHHhC--
Q 038217 487 LTTEARENAAATLFSLSAVHEYK--KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DN---CVRMIEAG-- 558 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~Ls~~~~~~--~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~n---~~~iv~aG-- 558 (715)
+...+.+..|+|+.|-.+..+- -+..+ .-++..++.+.+++.-.++...+-.|.|+.-+. .| +.-+.++-
T Consensus 486 -DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 486 -DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred -hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 7889999999999998776543 34444 567888999987766688899999999996532 22 22222221
Q ss_pred --ChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHh
Q 038217 559 --AVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMM 607 (715)
Q Consensus 559 --~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL 607 (715)
....|+..+. ++-.....+-+|.++|..++ -+..+.+....+..+-++|
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 2334555553 55444445666666655555 4445555444344444444
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.54 E-value=0.054 Score=47.51 Aligned_cols=64 Identities=28% Similarity=0.332 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh--ccCCHHHHHHHHHHHhhhhcCc-hhhhhhh
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL--STHNPVAQENSVTAMLNLSIYD-KNKSRIM 470 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~ 470 (715)
+...++.|.+++..++.++..+.+.|+||.++..- ...+|-+++.|+.++.||+... +|+..|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45678889999999999999999999999998864 4578999999999999998865 7777776
No 156
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.32 E-value=0.0041 Score=50.79 Aligned_cols=48 Identities=19% Similarity=0.479 Sum_probs=24.0
Q ss_pred CCcCccCccccc-C---ceeC----CCccHhhHHHHHHHHHh--CC--------CCCCCCcccccc
Q 038217 291 DFCCPIMLDLMR-D---PVII----STGQTYDRRSIARWMEE--GH--------RTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~-d---Pv~~----~cghtfcr~cI~~w~~~--~~--------~~CP~c~~~l~~ 338 (715)
+..|+||..... + |+.+ .|+++|-..|+.+||.. +. ..||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 568999998754 2 5544 58999999999999985 11 259999987753
No 157
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.81 Score=55.37 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=129.5
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCc
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGA 518 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~ 518 (715)
++.+..+|..+..+|-.|+........... .......|.+.+++. +..++..++.+|..|-.. .++...| ...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i---~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI---PKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH---HHH
Confidence 345788999999999999877432221110 122344444555554 445555555555555322 3444444 335
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhC------ChHHHHHhhC-----Ch-hHHHHHHHHHHHHhCC
Q 038217 519 VEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAG------AVTALVGALG-----HE-GVAEEAAGALALIVRQ 586 (715)
Q Consensus 519 I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG------~v~~Lv~lL~-----~~-~~~~~al~~L~~La~~ 586 (715)
|+.++=.+++.+...++.|..+|..++. .....+.| .|...+..+. +. .+....+-++..+...
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 6666666677888999999999998873 11122222 3334444442 22 1111112233333221
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
...-....=.+. +..+..+|.++++.+...|++.+..++...++........ -+++.+..++++.+...+.|..-|
T Consensus 816 ~~~~ld~~~l~~l-i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~--~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 816 FKNILDDETLEKL-ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE--ELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HhccccHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH--HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111111111122 5556667778999999999999999999887655544443 369999999999999999999887
Q ss_pred HHHHH
Q 038217 666 ARVFQ 670 (715)
Q Consensus 666 L~~l~ 670 (715)
++.|-
T Consensus 893 lekLi 897 (1176)
T KOG1248|consen 893 LEKLI 897 (1176)
T ss_pred HHHHH
Confidence 77664
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.25 E-value=0.058 Score=48.56 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs 460 (715)
...+..|+..|. +.++....-|+..|..+++..|..|..+-+.|+-..+..|+.++|++++.+|+.++..+-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 347889999994 667778888999999999999999999989999999999999999999999999997764
No 159
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.32 Score=55.20 Aligned_cols=221 Identities=21% Similarity=0.175 Sum_probs=142.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC------c-hhhh
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY------D-KNKS 467 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~------~-~nk~ 467 (715)
|+....+.+..++..|++.|-.|.....-.+. .....++++++.+..++..|+.++.-++.- . .+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 77777788999999999998887753222221 234567889988889998887766544321 1 1222
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-----------------------------------------
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH----------------------------------------- 506 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~----------------------------------------- 506 (715)
.+. ..++..+.+.+... +..+|..|+.+|..+-...
T Consensus 277 kl~--D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 277 KLK--DAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhH--HHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 332 45677777777665 5555555555544332111
Q ss_pred ----------hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC-CccHHHHHHhCChHHHHHhhCCh--hHH
Q 038217 507 ----------EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH-TDNCVRMIEAGAVTALVGALGHE--GVA 573 (715)
Q Consensus 507 ----------~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~--~~~ 573 (715)
+....|.. +|+--++|.=|.++-.+++++|+..++.|+.+ +..-.. ++..|+.++.|+ .++
T Consensus 354 ~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHH
Confidence 11112233 45555666666554568899999999999864 444333 477899999865 888
Q ss_pred HHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038217 574 EEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERV 637 (715)
Q Consensus 574 ~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 637 (715)
..|..+|..++.+ ..++..- ++.+.+.|...++.+|+..-..|.+ |.....++....
T Consensus 428 L~ai~aL~~Is~~-----l~i~eeq-l~~il~~L~D~s~dvRe~l~elL~~-~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 428 LKAIFALTMISVH-----LAIREEQ-LRQILESLEDRSVDVREALRELLKN-ARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHHHH-----heecHHH-HHHHHHHHHhcCHHHHHHHHHHHHh-cCCCcHHHHHHH
Confidence 9999999998765 2233444 7888888888899999877766654 555444444333
No 160
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.013 Score=63.47 Aligned_cols=51 Identities=16% Similarity=0.381 Sum_probs=40.0
Q ss_pred CCCCCcCccCccccc-----------------CceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMR-----------------DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~-----------------dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..+..-|+||+.... +-+..+|.|.|.+.|+++|...-.-.||+|+.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 566778999986432 122348999999999999999756799999998864
No 161
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.17 E-value=0.021 Score=46.43 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=35.0
Q ss_pred CcCccCccccc----CceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLMR----DPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm~----dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.||-|.--|. =|+.. .|.|.|-..||++|+.. ...||.++++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 36777776442 14444 79999999999999998 789999998753
No 162
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=2.3 Score=49.39 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=143.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhh----------------HHHHHH--cCChHHHHHhhcc-------CCHHH
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKEN----------------RAFIAK--AGAIPHLRNLLST-------HNPVA 448 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~----------------r~~i~~--~G~i~~Lv~lL~s-------~d~~~ 448 (715)
.-+...+|.+.++..++++-....|.+..+. +..... .+.+|.|+.+|.. ++...
T Consensus 263 itl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp 342 (859)
T KOG1241|consen 263 ITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNP 342 (859)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcH
Confidence 3345566788888888877777666543331 111111 2667888887754 23345
Q ss_pred HHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhh
Q 038217 449 QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLR 527 (715)
Q Consensus 449 ~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~ 527 (715)
...|-.+|.-++..-. ..|+ .-+++-+-.-++++ +..-|+.|+-++.+.-..++ .+..-.. .+++|.+++++.
T Consensus 343 ~kAAg~CL~l~A~~~~--D~Iv--~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV-~qalp~ii~lm~ 416 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVG--DDIV--PHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV-IQALPSIINLMS 416 (859)
T ss_pred HHHHHHHHHHHHHHhc--ccch--hhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH-hhhhHHHHHHhc
Confidence 5666666665553322 3344 23455444556677 88888888888877765444 4444333 689999999998
Q ss_pred cCChhHHHHHHHHHHHhhcC-CccHH-HHHHhCChHHHHHhhC-ChhHHHHHHHHHHHHhCC-c----ch-HHHHhhhCC
Q 038217 528 LGTPRGKKDAVTALFNLSTH-TDNCV-RMIEAGAVTALVGALG-HEGVAEEAAGALALIVRQ-P----IG-AAAVGEEEM 598 (715)
Q Consensus 528 ~~~~~~~~~A~~aL~nLs~~-~~n~~-~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~La~~-~----e~-~~~i~~~g~ 598 (715)
+.+--++..+.++|..++.. ++-+. ...-.+.++.++.=|. .+.+..+++|++.+|+.. . ++ ...... ..
T Consensus 417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~ 495 (859)
T KOG1241|consen 417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PF 495 (859)
T ss_pred CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hh
Confidence 66667788889999888764 32111 1223355666666665 579999999999999842 1 11 111111 12
Q ss_pred cHHHHHH-Hhhc------CChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 599 AVTGLVG-MMRC------GTPRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 599 ~I~~Lv~-lL~~------~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
.+.++. ++.. .....|-.|-.+|..+..++++.+...++
T Consensus 496 -y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 496 -YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred -HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 233333 3332 12456888888999988888665544443
No 163
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.05 E-value=0.34 Score=49.63 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC-----HHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN-----PVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLG 477 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~ 477 (715)
.-.+.|+.-++-+|. +++.|..+.++...-.|..+|...+ ..++-..++++..|.+.++. -.-+. ..+.+|
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiip 142 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHH
Confidence 345788888888996 5899999999999888899997643 45778888999999875543 34444 789999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh--------hcCChhHHHHHHHHHHHhhcCCc
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL--------RLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL--------~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
..++.++.| +.-.+..|+-++..+-.++..-..+++...-+..+...| ...+++..|..+.+-..|+.++.
T Consensus 143 lcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 143 LCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 999999999 989999999999999888877777766444343333332 34678999999999999999998
Q ss_pred cHHHHHH
Q 038217 550 NCVRMIE 556 (715)
Q Consensus 550 n~~~iv~ 556 (715)
.+..+..
T Consensus 222 ar~aL~~ 228 (262)
T PF04078_consen 222 AREALRQ 228 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 164
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=2.2 Score=49.17 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~ 467 (715)
|.....++.+|++.-+.++.+|+..+..+.-..|+.- .-.+|.|+.=|..+|+.++-.|+.+++.|+. ++.|--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 5567788899999999999999999988775544431 1357889999999999999999999999986 456555
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHH--Hh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALF--NL 544 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~--nL 544 (715)
.+. |.+.++|....+-=.......+..+|+.... .+|. ..+++|.+++.+-. ....=.++.++. |+
T Consensus 218 ~LA------P~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 218 QLA------PLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ccc------HHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 444 5666676553222233344555556655433 4443 57889999987543 222223333322 44
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
+....++...+.. ++..|-.++. |+.++-.++-++..++. ++. ++.++ -..+++.|...++.+|-.|+..
T Consensus 287 s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vqa~---kdlIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 287 SSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQAH---KDLILRCLDDKDESIRLRALDL 359 (877)
T ss_pred ccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHHHh---HHHHHHHhccCCchhHHHHHHH
Confidence 4444455554444 5666766664 67888888888887764 332 22222 2577888988899999999999
Q ss_pred HHHHHhc
Q 038217 622 LLELCRS 628 (715)
Q Consensus 622 L~~L~~~ 628 (715)
|..+...
T Consensus 360 l~gmVsk 366 (877)
T KOG1059|consen 360 LYGMVSK 366 (877)
T ss_pred HHHHhhh
Confidence 9888765
No 165
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.86 E-value=0.67 Score=51.65 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh----hHHHHHHHHHHHhhcCCccH
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP----RGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~----~~~~~A~~aL~nLs~~~~n~ 551 (715)
...+.+++.+| +...+..|...|.+||.+......... ..++..|..++.+|.. ......+.++..|-.+.-.-
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34556788888 888888899999999999998888888 7889999999988764 44555555555543322211
Q ss_pred HHHHHhCChHHHHHhhC----ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG----HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
...+....|.....+.. +..+...|+.+|.++...+. -+..+.++-- +..|+..++.++...+..|.+.+-.+-
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~-i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVP-IETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCc-HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11222223333444432 55778899999999988766 5555666556 999999999999999999988887777
Q ss_pred hcCCHHHHHH
Q 038217 627 RSGGASATER 636 (715)
Q Consensus 627 ~~~~~~~~~~ 636 (715)
...++..+..
T Consensus 242 ~~a~~~~R~~ 251 (713)
T KOG2999|consen 242 RKAPDDKRFE 251 (713)
T ss_pred hhCChHHHHH
Confidence 6655443333
No 166
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=2.1 Score=49.67 Aligned_cols=274 Identities=9% Similarity=0.062 Sum_probs=166.4
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhh-cc-CCHHHHHHHHHHHhhhhcCch-
Q 038217 390 ATAELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLL-ST-HNPVAQENSVTAMLNLSIYDK- 464 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL-~s-~d~~~~~~A~~aL~nLs~~~~- 464 (715)
+.+..|++...... ...+..++..|..+|.+ -+-....... .++..++.-. +. ++..++-.|+.+|.|--..-.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 56777777776543 34778899999999964 2333222233 4555666543 33 578899999999998644322
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
|-..=....-.+..+++.-++. +.+++..|...|..+...- .....++. ..+.--+.-++++++++.-.|+..=.
T Consensus 208 nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~~--alfaitl~amks~~deValQaiEFWs 284 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYMEQ--ALFAITLAAMKSDNDEVALQAIEFWS 284 (859)
T ss_pred hhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2111110222334445555565 8899999999988776522 22333332 33444455567888888888888777
Q ss_pred HhhcCC-----------------ccHHHHHH--hCChHHHHHhhC--C----h---hHHHHHHHHHHHHhCCcchHHHHh
Q 038217 543 NLSTHT-----------------DNCVRMIE--AGAVTALVGALG--H----E---GVAEEAAGALALIVRQPIGAAAVG 594 (715)
Q Consensus 543 nLs~~~-----------------~n~~~iv~--aG~v~~Lv~lL~--~----~---~~~~~al~~L~~La~~~e~~~~i~ 594 (715)
++|... .++..+.. .+++|.|+++|. | + .....|-..|..++.. ....|+
T Consensus 285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv 362 (859)
T KOG1241|consen 285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIV 362 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccch
Confidence 666421 11222222 267888999983 1 1 3344444444444321 112233
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
. .. +|-+-+-+++.+-+.++.|+-++..+-.+..+.....++ .++++.++.++.+.+--+++.+++.+--+.++-
T Consensus 363 ~-~V-l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 363 P-HV-LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred h-hh-HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 2 22 344444666778889999999998887766444444444 456999999999888888999888777666643
No 167
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=1.6 Score=50.63 Aligned_cols=262 Identities=19% Similarity=0.202 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh---
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS--- 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~--- 467 (715)
..+++=+.|.+-...+..+|+..+..+...++ |. +. -++..|-.+|++....+|-.|+.+|..++.-...+.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 45677777777788889999999988885432 22 22 277788889999999999999999999875332211
Q ss_pred -----hhhhh---cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHHHHhc------------ccCcHHHHHHH
Q 038217 468 -----RIMDE---EGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKKKIAD------------ESGAVEALATL 525 (715)
Q Consensus 468 -----~I~~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~I~~------------~~g~I~~Lv~L 525 (715)
.++.. .=+-.++.-+|+.| +.+....-...+.+... .++++..+++ ..+.+..|.++
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 12211 12445666777777 55544443333333322 1223222211 12334444555
Q ss_pred hhc-CChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHH
Q 038217 526 LRL-GTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGL 603 (715)
Q Consensus 526 L~~-~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~L 603 (715)
|++ |.-+.+++...++..... .++.|.. ++..|..++.|-+....+..+|..|-. ||-.+..-.. .|..+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~Psk-yir~i 471 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNPSK-YIRFI 471 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCcch-hhHHH
Confidence 543 223455555555544443 3333433 344456666555556666777766643 1111111111 13444
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 604 VGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 604 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
...+.-.+...|-.|+.+|..+..+.. . .. ..+...|...+.+.++.+++.|...|+.+...+
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~-----~-l~-~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDV-----V-LL-PSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCC-----C-cc-ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 443333467888899999999885531 1 12 345556667777889999999999999998543
No 168
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.02 Score=61.13 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=40.8
Q ss_pred CCCCCcCccCcccccCce-----e---CCCccHhhHHHHHHHHHhC------CCCCCCCccccc
Q 038217 288 IPKDFCCPIMLDLMRDPV-----I---ISTGQTYDRRSIARWMEEG------HRTCPKTGQMLV 337 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv-----~---~~cghtfcr~cI~~w~~~~------~~~CP~c~~~l~ 337 (715)
.-.+..|-||++...+++ . .+|.|+||..||.+|-... .+.||.|+.+..
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356899999999888877 3 3799999999999998642 378999987653
No 169
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=94.69 E-value=0.27 Score=55.34 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=120.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHcCChHHHHHhh----------ccCCHHHHHHHHHHHhhhhcCch-hhhhhhhhcCcHHH
Q 038217 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRNLL----------STHNPVAQENSVTAMLNLSIYDK-NKSRIMDEEGCLGS 478 (715)
Q Consensus 410 A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL----------~s~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g~i~~ 478 (715)
|+..|+-++++ +.+-..+....++..|.++- ...+..+...|+.+|+|+-.... .|..++ +.|..+.
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~-~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFV-DLGLAEK 78 (446)
T ss_pred CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHH-HcCcHHH
Confidence 35667777754 66777777766777777654 23578999999999999987764 477777 9999999
Q ss_pred HHHHHhcC----CCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhc---------C--------ChhHHHH
Q 038217 479 IVKVLRFG----LTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRL---------G--------TPRGKKD 536 (715)
Q Consensus 479 Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~---------~--------~~~~~~~ 536 (715)
++..|+.. .+.+..-....+||-++. ..+.+..+..+.+++..|+..|.. . +....-.
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999875 257888889999998875 556777777767888888876631 0 1234668
Q ss_pred HHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-----------ChhHHHHHHHHHHHH
Q 038217 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALG-----------HEGVAEEAAGALALI 583 (715)
Q Consensus 537 A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----------~~~~~~~al~~L~~L 583 (715)
++++|||+..+......--..+.++.++.++. ......+++.+|.|+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 89999999765433222112233444444321 126677788888887
No 170
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.67 E-value=4.1 Score=48.84 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=142.6
Q ss_pred HHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhc---CCC----HHHHHH
Q 038217 427 FIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRF---GLT----TEAREN 494 (715)
Q Consensus 427 ~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~---~~~----~e~~~~ 494 (715)
.+.+.||+..|+.+|.+ .+.......+..|..++....||..+. +.|+++.|++.|.. ... .+.-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll-~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALL-ELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHH-HcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 35678999999999975 345677778888888899999999999 89999999999852 112 455566
Q ss_pred HHHHHHHhccCch---hHHHHh--c-------ccCcHHHHHHHhhcC----ChhHHHHHHHHHHHhhcCCccHHHHHHhC
Q 038217 495 AAATLFSLSAVHE---YKKKIA--D-------ESGAVEALATLLRLG----TPRGKKDAVTALFNLSTHTDNCVRMIEAG 558 (715)
Q Consensus 495 Aa~~L~~Ls~~~~---~~~~I~--~-------~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG 558 (715)
...++..|...-. ...... . ...-+..|++.+.+. ++......+.+|-+|+.....+...+-.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~- 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE- 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-
Confidence 6666665543221 111111 0 122366666666542 4677888899999999877655443211
Q ss_pred ChHHHHHhhC-C------hhH-HHHHHHHHHHHhCCc---chHHHHhhhCCcHHHHHHHhhcC--------ChHH-----
Q 038217 559 AVTALVGALG-H------EGV-AEEAAGALALIVRQP---IGAAAVGEEEMAVTGLVGMMRCG--------TPRG----- 614 (715)
Q Consensus 559 ~v~~Lv~lL~-~------~~~-~~~al~~L~~La~~~---e~~~~i~~~g~~I~~Lv~lL~~~--------s~~~----- 614 (715)
.+.+.+.+=. | ..+ .+..+.+..++-.+. .-|..|++.|. +...+++|... +++-
T Consensus 270 ~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GI-v~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 270 HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGI-VQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhH-HHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1222222211 1 112 222223333332222 35677888888 88888877653 2223
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Q 038217 615 ---KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQR 671 (715)
Q Consensus 615 ---ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~ 671 (715)
-..++..|.-||.+. ...+ .++. .++++.|..|-+.. +..+-..|..+|..+++
T Consensus 349 ~psLp~iL~lL~GLa~gh-~~tQ-~~~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGH-EPTQ-LLIA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcC-HHHH-HHHH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 345778888888774 3333 3344 56677777666544 34444455556655544
No 171
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.66 E-value=1 Score=53.01 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=55.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
..+.+=|.++++.+|..|+.++..+-. ..+. ..+++++.+.+..+ +..+|..|+-+++.+=..+ +....+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~--~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV-----KELL--GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh-----HHHH--HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 333334445666666666666555421 1222 34566666666666 6666666666666664322 122222
Q ss_pred ccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.|.+..+..++.+.++.+..+|+.+|..+.
T Consensus 165 -~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 165 -LGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred -ccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 556666666666666666666666666553
No 172
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.63 E-value=0.059 Score=41.47 Aligned_cols=55 Identities=25% Similarity=0.053 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 489 TEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 489 ~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
+.+|..|+.+|.+++........-.. ..+++.|+.+|+++++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36789999999998876655444444 68999999999988889999999999875
No 173
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=7.3 Score=45.05 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcC
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG 486 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~ 486 (715)
+...+.+.-+++.+-+.-...+.. .+..|.++|++....++.-|+..++.|+........+- .. .+.++..|+..
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK-~h--~d~Ii~sLkte 380 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVK-KH--QDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHH-HH--HHHHHHHhccc
Confidence 344555555666555444444443 57788899999889999999999999988866556555 44 88899999976
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-C-Cc------cHH------
Q 038217 487 LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-H-TD------NCV------ 552 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~-~~------n~~------ 552 (715)
.+..+|+.|+..|..++.. +|.+.|++ .|++.|...+...+++-+.=..-|+. + .+ ..-
T Consensus 381 rDvSirrravDLLY~mcD~-~Nak~IV~------elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria 453 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDV-SNAKQIVA------ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA 453 (938)
T ss_pred cchHHHHHHHHHHHHHhch-hhHHHHHH------HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Confidence 6999999999999998764 45555654 56666665555544433322222221 0 11 111
Q ss_pred -HHHHhCChHHHHHhh-CChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHH----------------HHHHHhhc----C
Q 038217 553 -RMIEAGAVTALVGAL-GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVT----------------GLVGMMRC----G 610 (715)
Q Consensus 553 -~iv~aG~v~~Lv~lL-~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~----------------~Lv~lL~~----~ 610 (715)
..++.++-..+++++ .+++++..|+.-+...-..+...+.|++.||.|- .+..++.+ .
T Consensus 454 gd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~ 533 (938)
T KOG1077|consen 454 GDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLC 533 (938)
T ss_pred cccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccC
Confidence 112223444455555 3668888888777765555777788888777321 11112222 3
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 611 TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 611 s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
++..|---+.+...++...+ +....+++ .+..-...-+...++.|.+-|++...
T Consensus 534 s~~tr~lLLtTyiKl~nl~P-Ei~~~v~~------vFq~~~n~~D~ElQqRa~EYLql~k~ 587 (938)
T KOG1077|consen 534 SPVTRALLLTTYIKLINLFP-EIKSNVQK------VFQLYSNLIDVELQQRAVEYLQLSKL 587 (938)
T ss_pred ChhHHHHHHHHHHHHHhhCh-hhhHHHHH------HHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 45555555556666666653 23222222 22222333477778888877776654
No 174
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.53 E-value=0.87 Score=46.69 Aligned_cols=191 Identities=11% Similarity=0.073 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhh-------ccCC-----HHHHHHHHHHHhhhhcCchhhhhh
Q 038217 403 SPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLL-------STHN-----PVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL-------~s~d-----~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
+++.+..|+.+|..--...++....+... |.+..|++=. +.+. ..-..+|+..|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 57778898888876554445666666655 7777775522 2221 234567777777889999999999
Q ss_pred hhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
. ++...--|.-+|+... -+-.|-.+.+++..|...++ .-..+.. .+.||..++.+..|++-.|.-|.-.+..
T Consensus 88 l-~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 L-KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp H-HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred H-HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9 7776555555664421 24578899999999988554 3344455 8999999999999998888889998888
Q ss_pred hhcCCccHHHHHH--------hCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhh
Q 038217 544 LSTHTDNCVRMIE--------AGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGE 595 (715)
Q Consensus 544 Ls~~~~n~~~iv~--------aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~ 595 (715)
+-.++.+-..+.. ..++..++.-|. ++.+..+.+.+-..|+.++.++.++.+
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8776654333321 123344444442 568889999999999999999988865
No 175
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.63 Score=53.92 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
....|.+.++++++.+|..|+-.+.++-. .+.......|.++.|-.++.+.++.+..+|+.+|..+...+.
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 56778888999999999998887777653 455667788999999999999999999999999999976654
No 176
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.50 E-value=0.054 Score=40.83 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=31.8
Q ss_pred cCccCcc--cccCceeCCCc-----cHhhHHHHHHHHHh-CCCCCCCCc
Q 038217 293 CCPIMLD--LMRDPVIISTG-----QTYDRRSIARWMEE-GHRTCPKTG 333 (715)
Q Consensus 293 ~CpIc~~--lm~dPv~~~cg-----htfcr~cI~~w~~~-~~~~CP~c~ 333 (715)
.|.||++ .-.+|.+.+|. +.+-+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 44567777874 66899999999986 366899985
No 177
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.49 E-value=2.3 Score=44.62 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=148.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcC-ChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAG-AIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G-~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
++-++-.+.-|+..+.++... ++.|..+-..+ .-..++.+|+. ++.++|.+.+-+++.|+.+..-.+.|-..-..+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344556788899999999965 78888766554 44567778876 678999999999999998887665554335677
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcC---ChhHHHHH--------------
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLG---TPRGKKDA-------------- 537 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A-------------- 537 (715)
..++.+.+......+...+++++.++..-. .+-...+- .|-+..-|++|.++ +++.+.+-
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 888888877545567788889999887622 23333333 45566666666542 12222111
Q ss_pred -HH--HHHHh-------hc-------CCccHHHHHHh--CChHHHHHhhC--Chh-HHHHHHHHHHHHhC-CcchHHHHh
Q 038217 538 -VT--ALFNL-------ST-------HTDNCVRMIEA--GAVTALVGALG--HEG-VAEEAAGALALIVR-QPIGAAAVG 594 (715)
Q Consensus 538 -~~--aL~nL-------s~-------~~~n~~~iv~a--G~v~~Lv~lL~--~~~-~~~~al~~L~~La~-~~e~~~~i~ 594 (715)
.. .+..| |. .++|...+.+- ..+..|.++++ ++. ...-|+.-+..+.+ .||++.-+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 10 11111 11 11356666554 45888888885 332 33334444444433 699999999
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
..|+ =..+++++.+.++++|=.|+.++..+-
T Consensus 397 Kyg~-k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGV-KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred Hhhh-HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999 899999999999999999999986543
No 178
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.96 Score=51.49 Aligned_cols=211 Identities=19% Similarity=0.146 Sum_probs=123.1
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-------hhH
Q 038217 437 LRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-------EYK 509 (715)
Q Consensus 437 Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-------~~~ 509 (715)
|..+-.+.|..++.+|+.+|+.|+..-.-- .-.....++.++.. ...+|..|..+++..+... .+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS------KACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc------HHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 666677788899999999998887633211 12334556666665 6777777777776654322 011
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc---------------------------------C---------
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST---------------------------------H--------- 547 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~---------------------------------~--------- 547 (715)
.... ..++..+.+.+++.+-.++..|+++|..+-. .
T Consensus 276 ~kl~--D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 276 EKLK--DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhH--HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 1111 1344455555544333333333332221110 0
Q ss_pred ---------CccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHH
Q 038217 548 ---------TDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKE 616 (715)
Q Consensus 548 ---------~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke 616 (715)
++.-..++..|+=.+++.-|.|+ +++..|+..+..|+.+.-+-. ... +.-|++++.+.-..+|.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~a-ldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRA-LDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHH-HHHHHHHhccHHHHHHH
Confidence 01122344556666777777777 899999999999986433221 123 78899999888889999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 617 NAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 617 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.|+.+|..++.+. .+. ...++.+..-+.+.+..++..+..+|+..
T Consensus 429 ~ai~aL~~Is~~l------~i~--eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHL------AIR--EEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHh------eec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999998763 111 11244455555555555555555555443
No 179
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.034 Score=56.78 Aligned_cols=49 Identities=18% Similarity=0.381 Sum_probs=38.9
Q ss_pred cCccCcc-cccCceeC----CCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 293 CCPIMLD-LMRDPVII----STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 293 ~CpIc~~-lm~dPv~~----~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
.||+|.. .+..|-+. +|||+.|.+|..+.|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 5888883 44555422 8999999999999999999999999987755443
No 180
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.20 E-value=0.092 Score=40.37 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 038217 446 PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL 502 (715)
Q Consensus 446 ~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 502 (715)
+.++..|+.+|.+++........-. ...+++.|+.+|+++ +.++|.+|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999887765543334 578999999999887 779999999999764
No 181
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.12 E-value=3.1 Score=46.81 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 389 RATAELLIQQLANGS----PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~----~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
.+..-.|++.+.+.. .-....-++.+-.+.++|++.+..+. |.|-.-|+++-..++..++.+++.++.-.-
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 345566667665432 12223344555566677766665543 555566666678888889999888875441
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
-...+ ..++..|-.+|++. ....|-.|..+|-.|+.....+...++ +.+-.|+.+.+......|++.|..
T Consensus 297 -~~~~~--~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~vcN-----~evEsLIsd~Nr~IstyAITtLLK- 366 (898)
T COG5240 297 -GSQFV--DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSVCN-----KEVESLISDENRTISTYAITTLLK- 366 (898)
T ss_pred -CHHHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeeecC-----hhHHHHhhcccccchHHHHHHHHH-
Confidence 12222 23566666677776 788899999999999986655544433 222233344444555555555533
Q ss_pred hcCCccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHH--------HHhhhCC------cHHHHHHHhh
Q 038217 545 STHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAA--------AVGEEEM------AVTGLVGMMR 608 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~--------~i~~~g~------~I~~Lv~lL~ 608 (715)
....++..+++.. |+.+++=++|+ -+...|+..|+++ .|.-+. .+.+.|| .|..+.+++.
T Consensus 367 TGt~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~--Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 367 TGTEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLL--FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred cCchhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhh--CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 2334455554433 34444333332 2222333333322 111111 1223333 2445555554
Q ss_pred cCChHHHHHHHHHHHHHHhc
Q 038217 609 CGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 609 ~~s~~~ke~A~~~L~~L~~~ 628 (715)
..|..||.|+..|+..-..
T Consensus 443 -~~p~skEraLe~LC~fIED 461 (898)
T COG5240 443 -NDPDSKERALEVLCTFIED 461 (898)
T ss_pred -hCchHHHHHHHHHHHHHhh
Confidence 4667788777766665544
No 182
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.97 E-value=4.3 Score=47.06 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChH-HHHHhhccCCHHHHHHHHHHHhhhhcCch-hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIP-HLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~-~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~ 467 (715)
..+...+..|++.+..++.+|+..+..++.- -.++......|.+- .|...|...++++.-..+.+|..+...-. .|-
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 3455666788999999999999999888853 22332222222222 25677888889988777777766643221 121
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.=- ..|.+|.|.-+|++. ...+++++...+..++.......-..++...--.|+++|+.-+...+.+|...+.-++
T Consensus 878 ~pP-i~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 878 TPP-IKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CCC-hhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 111 468999999999997 8889999999999998766532222222334457888888777778888877765544
No 183
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.028 Score=59.70 Aligned_cols=60 Identities=23% Similarity=0.492 Sum_probs=48.0
Q ss_pred CCcCccCcccccCce-----eCCCccHhhHHHHHHHHHh-CCCCCCCCccccccCCCCccHHHHHH
Q 038217 291 DFCCPIMLDLMRDPV-----IISTGQTYDRRSIARWMEE-GHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv-----~~~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
.-+||||++-..-|+ ++.|||-|-..||++|+.. -...||.|.-....+.+.|-+.+|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 358999999887665 3489999999999999953 23579999887777788888777654
No 184
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.92 E-value=0.38 Score=47.50 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHHhhcCCccHHHHHHh----------------CChHHHHHhhCC--------hhHHHHHHHHHHHHhC
Q 038217 530 TPRGKKDAVTALFNLSTHTDNCVRMIEA----------------GAVTALVGALGH--------EGVAEEAAGALALIVR 585 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~n~~~iv~a----------------G~v~~Lv~lL~~--------~~~~~~al~~L~~La~ 585 (715)
.......++.+|.||+..++.+..++.. .++..|+..+.. .+--.....+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445667888899999888877766543 246667777631 2556889999999999
Q ss_pred CcchHHHHhhhCCc---HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhc--CCcHHHHHHHhh
Q 038217 586 QPIGAAAVGEEEMA---VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA--PALVGLLQALLF 652 (715)
Q Consensus 586 ~~e~~~~i~~~g~~---I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~--~g~i~~L~~Ll~ 652 (715)
.++||..++....+ +..|+.++.+.|..-|.-+++++.|+|... .....+... .++++.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999876543 456666677678888999999999999884 445566653 357777776665
No 185
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=4.9 Score=47.01 Aligned_cols=224 Identities=16% Similarity=0.122 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hh
Q 038217 387 ANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KN 465 (715)
Q Consensus 387 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~n 465 (715)
..+...+...+.|+..++..+++|+-+...+-...|+.-.. +++.-.++|.+.+..+...++..+..++... ++
T Consensus 139 mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 139 MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 34556777778888999999999998888887777665443 3455556666666666666666666555432 22
Q ss_pred hhhhhhhcCcHHHHHHHHhc----C----------CCHHHHHHHHHHHHHhccCc------------------hhHHHHh
Q 038217 466 KSRIMDEEGCLGSIVKVLRF----G----------LTTEARENAAATLFSLSAVH------------------EYKKKIA 513 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~----~----------~~~e~~~~Aa~~L~~Ls~~~------------------~~~~~I~ 513 (715)
-..+- ..++.+|..|+. + .++=++...+.+|.-|-.++ +.-..+|
T Consensus 214 l~~fr---~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 214 LSYFR---DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHH---HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence 22221 134444444431 1 12334555555555554443 3222222
Q ss_pred cccCcHHHHHHHhh-cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHH------------------hhC--ChhH
Q 038217 514 DESGAVEALATLLR-LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVG------------------ALG--HEGV 572 (715)
Q Consensus 514 ~~~g~I~~Lv~LL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~------------------lL~--~~~~ 572 (715)
+ .=..+....++. ..+...+..|+.+|...-.+++|-.+-+. +..|+. .|+ |..+
T Consensus 291 n-AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva---Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 291 N-AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA---LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred h-HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee---hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 2 111111112221 13467788888888888776664333222 333333 333 3355
Q ss_pred HHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 573 AEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 573 ~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
+.+|+..+..|.. ..+-..| +..|+++|...++..|...++-+..++...
T Consensus 367 krralELs~~lvn-~~Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 367 KRRALELSYALVN-ESNVRVM------VKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHhc-cccHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 5555555555532 1122211 445666777778888888888777776544
No 186
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.034 Score=59.30 Aligned_cols=47 Identities=19% Similarity=0.516 Sum_probs=39.6
Q ss_pred CCCCCcCccCccccc---CceeCCCccHhhHHHHHHHHHhCC--CCCCCCcc
Q 038217 288 IPKDFCCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEGH--RTCPKTGQ 334 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~~--~~CP~c~~ 334 (715)
...-|.|||..+-=. -|+.+.|||..++..+.+..++|. +.||.|-.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 455689999887654 378889999999999999999887 88999953
No 187
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.81 E-value=0.028 Score=65.21 Aligned_cols=51 Identities=16% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCCCCCcCccCccccc--C---ceeC--CCccHhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 287 SIPKDFCCPIMLDLMR--D---PVII--STGQTYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~--d---Pv~~--~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
.+...-.|+||..++. | |--. .|.|.|.-.|+.+||+. ++.+||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3455567999998875 2 3322 58899999999999996 5789999996553
No 188
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.037 Score=57.51 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
.++-.||||.---...|..+|+|.-|..||.+++-. ...|=.|+...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 367899999998888899999999999999999987 67788886544
No 189
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.72 E-value=1.6 Score=48.05 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=103.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCch----hHHHHhcccCcHHHHHHHhhcCC------hh-HHHHHHHHHHHhhcCC
Q 038217 480 VKVLRFGLTTEARENAAATLFSLSAVHE----YKKKIADESGAVEALATLLRLGT------PR-GKKDAVTALFNLSTHT 548 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~I~~~~g~I~~Lv~LL~~~~------~~-~~~~A~~aL~nLs~~~ 548 (715)
..+++ +.+.+.+-.|+-....+..+++ +|+.+.+ .=+++.+=+++..++ +. -+.-++..|...|+.+
T Consensus 17 ~~L~~-~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 17 LKLLK-GKRDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHhc-ccChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 33444 3367777777777788887775 6666777 667888888887532 22 2556788888999988
Q ss_pred c--cHHHHHHhCChHHHHHhhC---Ch------hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHH
Q 038217 549 D--NCVRMIEAGAVTALVGALG---HE------GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKE 616 (715)
Q Consensus 549 ~--n~~~iv~aG~v~~Lv~lL~---~~------~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke 616 (715)
+ ....|+.. ||.|+.+++ |+ .+.+.+...|..++.++.|...++..|+ ++.+.++-.- +..-...
T Consensus 95 ElAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~-~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGG-LRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCc-hHHHHHHHhCCCCchhHH
Confidence 7 56666654 999999994 33 4899999999999999999999999999 9999985443 2333445
Q ss_pred HHHHHHHHHHh
Q 038217 617 NAVAALLELCR 627 (715)
Q Consensus 617 ~A~~~L~~L~~ 627 (715)
.|+.++.-+..
T Consensus 172 lal~Vlll~~~ 182 (698)
T KOG2611|consen 172 LALKVLLLLVS 182 (698)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 190
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.53 E-value=3.6 Score=48.92 Aligned_cols=265 Identities=12% Similarity=0.125 Sum_probs=146.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchhhhhhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKSRIMDE 472 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~~I~~~ 472 (715)
.|++++.+.+-+.|.-|...|..-...+..+-..=.+...+..|+++|++.+.++|.-|+.+|.-|+. ..+.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--l--- 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--L--- 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--H---
Confidence 67788999999999999888765443321111111234678889999999999999999999998872 11111 1
Q ss_pred cCcHHHHHHHHhcCCCHHHHHH-HHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-----C-ChhHHHHHHHHHHHhh
Q 038217 473 EGCLGSIVKVLRFGLTTEAREN-AAATLFSLSAVHEYKKKIADESGAVEALATLLRL-----G-TPRGKKDAVTALFNLS 545 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~-Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-----~-~~~~~~~A~~aL~nLs 545 (715)
...++.|..-+-+| ....|.- +.+.....+..+........ +.+++.+...+.. + ....+-.++..|..+-
T Consensus 84 e~~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 11233333333333 3334432 33333333433321111112 2334444443332 2 2335666666666553
Q ss_pred cC-CccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHH
Q 038217 546 TH-TDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAA 621 (715)
Q Consensus 546 ~~-~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~ 621 (715)
+. .+--.. ...+....++.-+.. ..++.+++.+|..|+.. -++.... +. +..|++-|.. .++....--+.+
T Consensus 162 sr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~~~~ly~--~l-i~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 162 SRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-CNRDLYV--EL-IEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-cCHHHHH--HH-HHHHHhccCCCCchHHHHHHHHH
Confidence 32 221111 233445555555543 37889999999998752 1111111 12 3444443322 344445555677
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHh---hcCCHHHHHHHHHHHHHHHHhh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALL---FTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
|..+|+..|......+ ..+++.+.... ....+..+++.-..+..|-...
T Consensus 237 l~~i~r~ag~r~~~h~---~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHL---DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHhcchhhccc---chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 7888887654322222 23688888888 6778899999887777665433
No 191
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.50 E-value=0.019 Score=65.24 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=42.3
Q ss_pred CCCCcCccCcccccCceeC---CCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 289 PKDFCCPIMLDLMRDPVII---STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
...-.||+|..-+.|-.+. .|+|.||..||..|.+. ..+||.|+..+...
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 4567899999988887654 79999999999999987 78999999877543
No 192
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.46 E-value=0.46 Score=46.96 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhh---------------hcCcHHHHHHHHhcC-----CCHHHHHHHHHHHHHhcc
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMD---------------EEGCLGSIVKVLRFG-----LTTEARENAAATLFSLSA 504 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~---------------~~g~i~~Lv~lL~~~-----~~~e~~~~Aa~~L~~Ls~ 504 (715)
+......++..|.||+..+.....+.. ....+..|++.+..| ....-....+.++.|+|.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344556677888888887776654441 234788888888663 134556789999999999
Q ss_pred CchhHHHHhcccC-c--HHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHh---CChHHHHHhh
Q 038217 505 VHEYKKKIADESG-A--VEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEA---GAVTALVGAL 567 (715)
Q Consensus 505 ~~~~~~~I~~~~g-~--I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~v~~Lv~lL 567 (715)
.++.|..+..... . +..|+......+.--++-++.+|.|+|.+.+.+..+... +++|.|+--|
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999999987443 3 556666666666666778899999999999998888763 4555555444
No 193
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.43 E-value=1.8 Score=48.93 Aligned_cols=216 Identities=15% Similarity=0.192 Sum_probs=122.5
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh----hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN----KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n----k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
.|.+|.|...|++....++.+.+..+..++..... |+-|. .--.|+++|++- +.+.|.+|..++..+|.
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR----IcfeLvd~Lks~-nKeiRR~A~~tfG~Is~-- 759 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR----ICFELVDSLKSW-NKEIRRNATETFGCISR-- 759 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH----HHHHHHHHHHHh-hHHHHHhhhhhhhhHHh--
Confidence 48999999999999999999999999999876643 44443 345678888886 89999999999988865
Q ss_pred hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHHH
Q 038217 507 EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-----HEGVAEEAAGALA 581 (715)
Q Consensus 507 ~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L~ 581 (715)
.||- ...+..|++-|+.+..+.+.....++.-.+. -.|-+..|-.+++ +..++...+.+++
T Consensus 760 ----aiGP-qdvL~~LlnnLkvqeRq~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 760 ----AIGP-QDVLDILLNNLKVQERQQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred ----hcCH-HHHHHHHHhcchHHHHHhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 4554 4555555555544332222222222211110 1244444444443 2255655555555
Q ss_pred HHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHH-HHHHHHhcCCcHHHHHHHhhcCCHHHHH
Q 038217 582 LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGAS-ATERVLKAPALVGLLQALLFTGTKRARR 660 (715)
Q Consensus 582 ~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~-~~~~l~~~~g~i~~L~~Ll~s~~~~~k~ 660 (715)
-+=.. -|....----...|.|-+.|.+.++.-|.-|..++.+|+-+.+.. .-.+++. ++..|+.=+-..+|.+..
T Consensus 826 fmFey-ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH---LlNllwpNIle~sPhvi~ 901 (975)
T COG5181 826 FMFEY-IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH---LLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHH-HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH---HHHHhhhhccCCCcHHHH
Confidence 44211 111111111121344444666677888888888888887765211 1111111 122233323455777776
Q ss_pred HHHHHHHHHHH
Q 038217 661 KAASLARVFQR 671 (715)
Q Consensus 661 ~A~~lL~~l~~ 671 (715)
.-..-+.-++.
T Consensus 902 ~~~Eg~e~~~~ 912 (975)
T COG5181 902 SFDEGMESFAT 912 (975)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 194
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.39 E-value=5.1 Score=45.51 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH---HHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENR---AFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r---~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
.+.|...+..|++.+++++.+|+.....+++- -.+. ..+...|.| |..-|...++++.-..+.|++.+...-.-
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~v-lk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKV-LKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 45677888899999999999999888777743 1111 223333433 45566777888887777777766433222
Q ss_pred -hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 466 -KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 466 -k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
+-+=- ..|.+|.|.-+|++. ...+..+..+.+..++.+.....-..++...--.|+++|++-+.+.+.+|...+..+
T Consensus 680 ~~mqpP-i~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 680 RSMQPP-ISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccCCc-hhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 11111 358999999999987 778888888888888776543222222233445788888888888888888887665
Q ss_pred hc
Q 038217 545 ST 546 (715)
Q Consensus 545 s~ 546 (715)
+.
T Consensus 758 s~ 759 (975)
T COG5181 758 SR 759 (975)
T ss_pred Hh
Confidence 53
No 195
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.38 E-value=0.67 Score=45.32 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHHcCChHHHHHhhcc---------CCHHHHHHHHHHHhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKE-NRAFIAKAGAIPHLRNLLST---------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---------~d~~~~~~A~~aL~nLs 460 (715)
....++..|.+++... +.+..|+...+.++. --..|++.||+..|+.+|.. .+...+..++.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 5667888888766543 566666666655432 34456678999999998863 35678899999999999
Q ss_pred cCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 038217 461 IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS 503 (715)
Q Consensus 461 ~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 503 (715)
.+..+...+....+++..|+..|.+. +..++..|+.+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 88888777776799999999999987 8999999999998765
No 196
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.38 E-value=0.063 Score=55.54 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=36.7
Q ss_pred cCccCccccc--CceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 293 CCPIMLDLMR--DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 293 ~CpIc~~lm~--dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
.||+|.+.|. |--.. +||...|+.|+...-+.-+..||.||...+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3999999885 33333 688888999988766655779999998777655
No 197
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.33 E-value=0.55 Score=40.95 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
+++++..+.+.+.++|..|+.+|.+++..........+ ..+.+.|..++.+.++.+|..|.-|-++|.
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f---~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF---NEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 78888888889999999999999999987644333222 346888999999999999999988888775
No 198
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.17 E-value=0.26 Score=48.25 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=64.9
Q ss_pred HHHHHHhCChHHHHHhhC-----------ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 551 CVRMIEAGAVTALVGALG-----------HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~-----------~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
...|++.||+..|+.+|. +......++..|..|..+..|...++....++..|+..|.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 567888899999999884 226778899999999988999999999888899999999999999999999
Q ss_pred HHHHHHHh
Q 038217 620 AALLELCR 627 (715)
Q Consensus 620 ~~L~~L~~ 627 (715)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999983
No 199
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.054 Score=57.20 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=33.4
Q ss_pred CcCccCcccccCce---eC-CCccHhhHHHHHHHHHhC--CCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRDPV---II-STGQTYDRRSIARWMEEG--HRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~dPv---~~-~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~ 338 (715)
-.|.||-+.+-.-- -+ .|||+|.-.|+++||... +++||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 37999955442211 12 699999999999999863 3689999844443
No 200
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.10 E-value=0.07 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CccCccccc--CceeC--CCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 294 CPIMLDLMR--DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 294 CpIc~~lm~--dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
||+|.+.|. |--.. +||..+|+.|..+-...+...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988882 21223 68999999999988876788999999764
No 201
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.062 Score=56.70 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCcCccCcccccCceeCCCccHh-hHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTY-DRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtf-cr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|-||+.--+|-++++|.|.. |..|-.... -....||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 56899999999999999999975 999987654 447789999998743
No 202
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=3.8 Score=49.95 Aligned_cols=228 Identities=16% Similarity=0.208 Sum_probs=132.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhccCCHHHHHHHHHHHhhhhcC--chhhhhhhhhcCc
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLSTHNPVAQENSVTAMLNLSIY--DKNKSRIMDEEGC 475 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~--~~nk~~I~~~~g~ 475 (715)
++.+..+|.++-+.|..++.. +.......+. ..-..|.+-..+.+..++..++.+|..|-.. .++...+. -.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HH
Confidence 355888899999999888864 3333332221 1223344444455666777777777666432 23444444 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcc----CchhHHHHhcccCcHHHHHHHhhcC---C-hhHHHHHHHHHHHhhcC
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSA----VHEYKKKIADESGAVEALATLLRLG---T-PRGKKDAVTALFNLSTH 547 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~----~~~~~~~I~~~~g~I~~Lv~LL~~~---~-~~~~~~A~~aL~nLs~~ 547 (715)
|+-++-.++.- +...|++|..+|..+.. .++.... . ...|...+.++..+ + +......+.++..+...
T Consensus 740 I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 44444444554 88999999999999873 1111000 0 22455555555443 2 22222224444444432
Q ss_pred CccHHHHHHhCChHH----HHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTA----LVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVA 620 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~----Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~ 620 (715)
.. .+...+.++. +...|. .++++..|++.+..++. .|+....-....- ++.+..+++.++...+...-.
T Consensus 816 ~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L-L~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 816 FK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL-LPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred Hh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence 22 2223333334 444443 67999999999999876 4655444333334 788888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 038217 621 ALLELCRSGGASATERVLK 639 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~ 639 (715)
.|-.|++..+.+..+.+..
T Consensus 892 LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 892 LLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHhCHHHHHhhCH
Confidence 8888888776555544443
No 203
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=92.72 E-value=0.058 Score=56.97 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=39.1
Q ss_pred cCccCcccccCceeCCCccHhhHHHHHHHHHh-CCCCCCCCccccccC
Q 038217 293 CCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-GHRTCPKTGQMLVHD 339 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~~ 339 (715)
.|.||-+-=+|=-+=+|||-.|-.|+..|-.. +..+||.|+-.+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 69999998887555599999999999999865 478999999776543
No 204
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.069 Score=53.02 Aligned_cols=39 Identities=36% Similarity=0.600 Sum_probs=34.9
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~ 324 (715)
..+.+.-+|.+|++..+|||+.+-||.|||.||.+++..
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 456667788999999999999999999999999999865
No 205
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=92.70 E-value=0.095 Score=52.80 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=36.9
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCCCc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPKTG 333 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~c~ 333 (715)
+++|||+......|++- .|||.|+|..|...+.. -...||.-+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 68999999999999987 89999999999998764 235699844
No 206
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.66 E-value=0.092 Score=39.78 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCcCccCcccccCceeC-CCccH--hhHHHHHHHHH-hCCCCCCCCccc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQT--YDRRSIARWME-EGHRTCPKTGQM 335 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cght--fcr~cI~~w~~-~~~~~CP~c~~~ 335 (715)
.+.|||+...|.-|+-- .|.|. |+...+..... .+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999966 89986 55544433333 356789999864
No 207
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.081 Score=42.79 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=36.7
Q ss_pred CCCCCcCccCcccccC-ceeC-CCccHhhHHHHHHHHHh--CCCCCCCCccccc
Q 038217 288 IPKDFCCPIMLDLMRD-PVII-STGQTYDRRSIARWMEE--GHRTCPKTGQMLV 337 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~d-Pv~~-~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~ 337 (715)
.|=+-.||-|.-.=.| |.+. -|.|.|-..||.+|+.. ....||.||+...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4445667777655544 4444 79999999999999985 3468999998653
No 208
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.18 E-value=7 Score=41.78 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=102.4
Q ss_pred HhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC---chhHHHHhc
Q 038217 439 NLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV---HEYKKKIAD 514 (715)
Q Consensus 439 ~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~I~~ 514 (715)
..|..+....++.|+..+.++....---..+.. ..-.+..+.+.+++| +.+.+..|+.++.-|+.. .+....+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 334445566777777777666433322122221 234577888888888 556666676666655443 234445544
Q ss_pred ccCcHHHHHHHhhcCCh--hHHHHHHHHHHHhhcCC----ccHHHHHHhCChHH--HHHhhC------------ChhHHH
Q 038217 515 ESGAVEALATLLRLGTP--RGKKDAVTALFNLSTHT----DNCVRMIEAGAVTA--LVGALG------------HEGVAE 574 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~--~~~~~A~~aL~nLs~~~----~n~~~iv~aG~v~~--Lv~lL~------------~~~~~~ 574 (715)
...|.|.+.+.+++. ..+..++.+|.-++... +.....++ .+.. ....++ ++.+..
T Consensus 129 --~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 129 --ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred --HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 578889999887653 44445555665554421 12221111 1221 111111 235777
Q ss_pred HHHHHHHHHhCC-cchH-HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 575 EAAGALALIVRQ-PIGA-AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 575 ~al~~L~~La~~-~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
.|+..-..|... +... ....+ .. ++.|+.+|.+.+..+|-.|-.+|.-|.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~-~~-~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLE-EA-LPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HH-HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777777666553 4322 22232 34 899999999999999988887775554
No 209
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.97 E-value=9.2 Score=44.48 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--------CCHHHHHHHHHHHhh--
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--------HNPVAQENSVTAMLN-- 458 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--------~d~~~~~~A~~aL~n-- 458 (715)
+...-.+++...|.+.+.+.-.+..+...|...- .-........+|.+...... ....+.+-++.+-.+
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 4456667777788888888888888888775432 22222333445544433211 112222222222222
Q ss_pred -----------hhcCchhhhhhhhhcCcHHHHHHHHhcC-CCHHHHH-HHHHHHHHhccCchhH-----------HHHhc
Q 038217 459 -----------LSIYDKNKSRIMDEEGCLGSIVKVLRFG-LTTEARE-NAAATLFSLSAVHEYK-----------KKIAD 514 (715)
Q Consensus 459 -----------Ls~~~~nk~~I~~~~g~i~~Lv~lL~~~-~~~e~~~-~Aa~~L~~Ls~~~~~~-----------~~I~~ 514 (715)
+-..++.-..| ..+.+..++..|-.. .+...-+ .--++|..+......- ..++.
T Consensus 714 ~~~~v~R~v~~lkde~e~yrkm--~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 714 SDPIVSRVVLDLKDEPEQYRKM--VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred chHHHHHHhhhhccccHHHHHH--HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 21111111122 246677777666442 1111111 1223334443222111 11111
Q ss_pred -----ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHH---HHHhCChHHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 515 -----ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR---MIEAGAVTALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 515 -----~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~---iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
.+..+...+..|++.++.++..|+.++..|+.--.+|.. |...|+ .|.+.|+ .+++.-..+++|..++
T Consensus 792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHH
Confidence 012233455667778889999999988888754444422 333343 2566675 4567666666666664
Q ss_pred CCcchHHHHh-hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHH
Q 038217 585 RQPIGAAAVG-EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663 (715)
Q Consensus 585 ~~~e~~~~i~-~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~ 663 (715)
..- |-..+. -..+.+|.|.-+|++...+++++++..+..+|.++++.+-..=+. -+-=-|++++++.....++.|.
T Consensus 870 nvi-gm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 870 NVI-GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred Hhc-cccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 321 111111 122348999999999999999999999999999886532211111 1234478888888889999988
Q ss_pred HHHHHHHH
Q 038217 664 SLARVFQR 671 (715)
Q Consensus 664 ~lL~~l~~ 671 (715)
..+-.+.+
T Consensus 947 nTfG~Iak 954 (1172)
T KOG0213|consen 947 NTFGYIAK 954 (1172)
T ss_pred hhhhHHHH
Confidence 77776665
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.89 E-value=3.1 Score=49.98 Aligned_cols=189 Identities=16% Similarity=0.102 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH--HhhcCCccHHH
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF--NLSTHTDNCVR 553 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~--nLs~~~~n~~~ 553 (715)
+|.++++|-+. --|..|+.+|...-....-...+.-.-|.+|-.++||++...+. +-.+..+| -|+.++.....
T Consensus 474 LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~EL-rpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAREL-RPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhh-hhhHHHHHHHHHhcCchhHHH
Confidence 44445555432 22444555554443333323333222699999999998765444 44555555 46777777888
Q ss_pred HHHhCChHHHHHhhCC-----hhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHHH
Q 038217 554 MIEAGAVTALVGALGH-----EGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLELC 626 (715)
Q Consensus 554 iv~aG~v~~Lv~lL~~-----~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L~ 626 (715)
+++.++-.-.++.|.+ ++-+.-|+-+|+.++.+ +-|..+..+.+- |..-.+.|.++ .+-.+..++-+|..|-
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l-i~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL-IGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH-HHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 8888776677777753 35667788889999885 669999998776 88888888876 4888999999999988
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 627 RSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.+..+ .+ -.....++.+.|+.++.+..++++..|.-.|..|-.
T Consensus 629 ~d~~~-Ar-w~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 629 EDYDE-AR-WSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hhcch-hh-hccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 87633 22 223336789999999999999999999977766544
No 211
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.81 E-value=4.2 Score=43.85 Aligned_cols=217 Identities=15% Similarity=0.123 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-HHHH--cCChHHHHH-hhc-cCCHHHHHHHHHHHhhhhcCc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRA-FIAK--AGAIPHLRN-LLS-THNPVAQENSVTAMLNLSIYD 463 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~-~i~~--~G~i~~Lv~-lL~-s~d~~~~~~A~~aL~nLs~~~ 463 (715)
.+.+..|+..|...+.+.+..++....++.+.....+. ..++ ..--|-++. ++. .+++++--.+-..|..+..++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 45778888999999999999999999888887655543 1111 112133333 332 256777778888899999888
Q ss_pred hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh-ccCchhHHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL-SAVHEYKKKIAD--ESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L-s~~~~~~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.-...|. ....+..+....+.+ +-++-..|..++..| ..+......... -...+.....||.+++-=++..++..
T Consensus 155 ~l~~~iL-~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 155 SLAKIIL-YSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHH-TSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHHh-CcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 7767777 677888899999888 999999999999986 444443333222 12466778888999999999999999
Q ss_pred HHHhhcCCccHHHHHHh----CChHHHHHhhCC--hhHHHHHHHHHHHHhCCcch---HHHHhhhCCcHHHHHHHhhc
Q 038217 541 LFNLSTHTDNCVRMIEA----GAVTALVGALGH--EGVAEEAAGALALIVRQPIG---AAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a----G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~---~~~i~~~g~~I~~Lv~lL~~ 609 (715)
|..|-.++.|-.-|... ..+..++.+|+| ..++-+|..++...+.+|.- -..|+..+- ..|++.+..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr--~kLl~fl~~ 308 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR--EKLLRFLKD 308 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH--HHHHHHHHT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHHHHHHh
Confidence 99999999987766544 557788888874 58999999999988765432 223333343 455555554
No 212
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.78 E-value=12 Score=39.96 Aligned_cols=187 Identities=18% Similarity=0.160 Sum_probs=106.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC---CccHHH
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLSTH---TDNCVR 553 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~---~~n~~~ 553 (715)
..+..+... +...|+.++..|..+-........+.. ..-.+..+.+.++.|..+-+..|+.++.-|+.. .+....
T Consensus 47 ~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 334444443 678899999888877654433333322 124577888888888776667777777777654 234445
Q ss_pred HHHhCChHHHHHhhCCh----hHHHHHHHHHHHHhC---C-cchHHHHhhhCCcHHHHH--HHhhc-C---------ChH
Q 038217 554 MIEAGAVTALVGALGHE----GVAEEAAGALALIVR---Q-PIGAAAVGEEEMAVTGLV--GMMRC-G---------TPR 613 (715)
Q Consensus 554 iv~aG~v~~Lv~lL~~~----~~~~~al~~L~~La~---~-~e~~~~i~~~g~~I~~Lv--~lL~~-~---------s~~ 613 (715)
+.+ ...|.|...+.|. .++..++.+|..++. . .+......+ . +..+. ..++. | ++.
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~-le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--S-LESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--H-HHHHHHHHhcCcCCCcccccCCCccH
Confidence 444 3678888888632 344455555555433 2 222221111 1 22111 11222 1 234
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
..-.|+.+-.-|...-+......... ..++.|..++.+.+..++..|...+-++-+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56666655444444433322334333 349999999999999999999887777754
No 213
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.76 E-value=0.075 Score=40.52 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=37.5
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
+..|-.|...-...++++|||..|+.|..-+- -..||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhh---ccCCCCCCCcccCCC
Confidence 55677888888888999999999999876542 457999999886543
No 214
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.53 E-value=6.7 Score=41.63 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=109.8
Q ss_pred CChHHHH-HhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-
Q 038217 432 GAIPHLR-NLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK- 509 (715)
Q Consensus 432 G~i~~Lv-~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~- 509 (715)
+.+..|+ +-+.+.++.+++.|+.+|...+..+. .+. ...++.+...++.+ +.+++..|+.+++.+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a--~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA--KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 4555554 67788999999999999999988775 222 33467788888777 9999999999999886532211
Q ss_pred --HH------HhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHh-hC-----ChhHHHH
Q 038217 510 --KK------IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGA-LG-----HEGVAEE 575 (715)
Q Consensus 510 --~~------I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~l-L~-----~~~~~~~ 575 (715)
.. ... ...+..+.+.+.+.+++.+..|+..++.|-....... ...++..|+-+ +. +..++.-
T Consensus 100 ~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11 112 4567778888888888999999999999876554332 12233333333 22 2344444
Q ss_pred HHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc
Q 038217 576 AAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 576 al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
-...+-..|......+..+.... ++.+-.+...
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~~~f-~~~l~~~~~~ 208 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLAEAF-LPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHHhC
Confidence 44445566665554455555555 7887777665
No 215
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.30 E-value=6.9 Score=46.68 Aligned_cols=230 Identities=16% Similarity=0.138 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHH-HHH---HHhhhhcCc
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN-SVT---AMLNLSIYD 463 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~-A~~---aL~nLs~~~ 463 (715)
.+..+..+++.|...+.++|.-|+++|.-+++.-++.+.. -.+..|+.-+-++....+.- +++ .+.|+.-
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P-- 118 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP-- 118 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC--
Confidence 3457889999999999999999999999888554333321 12333433222222222221 222 2233332
Q ss_pred hhhhhhhhhcCcHHHHHHHHhc-----CCCHHHHHHHHHHHHHh-ccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRF-----GLTTEARENAAATLFSL-SAVHEYKKKIADESGAVEALATLLRLGTPRGKKDA 537 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~-----~~~~e~~~~Aa~~L~~L-s~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A 537 (715)
.-.... ...+++.+...|.. +....++-.++.++... +...+.-... ..+....++.-+......++|.|
T Consensus 119 -~~~~~l-a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f--h~~il~~l~~ql~s~R~aVrKka 194 (1233)
T KOG1824|consen 119 -SSSSFL-AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF--HLSILKCLLPQLQSPRLAVRKKA 194 (1233)
T ss_pred -cccccc-ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch--HHHHHHHHhhcccChHHHHHHHH
Confidence 112222 34445555555543 21223455555555433 2221111111 12333444444444446789999
Q ss_pred HHHHHHhhcCCccHHHHHHhCChHHHHHhhCC---hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHh---hcCC
Q 038217 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALGH---EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM---RCGT 611 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~---~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL---~~~s 611 (715)
+.+|..|+.... ..+-.+++..|++=|++ ......-..+|..++.....|.-- -.+..+|.+.++. ....
T Consensus 195 i~~l~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~d 270 (1233)
T KOG1824|consen 195 ITALGHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS-HLDKIVPLVADYCNKIEEDD 270 (1233)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc-ccchhhHHHHHHhcccccCc
Confidence 999999987432 22233556777777752 233344445555555433222211 1222367777777 5578
Q ss_pred hHHHHHHHHHHHHHHhcCCH
Q 038217 612 PRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 612 ~~~ke~A~~~L~~L~~~~~~ 631 (715)
++.||.++.+|-.+-...+.
T Consensus 271 DELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 271 DELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHHHHHHHhChh
Confidence 89999999998888776643
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=0.59 Score=54.52 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=37.3
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCcc
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
.+-+.-.|..|...+.-|++. .|||.|.+.|.+ .+...||.|..
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 344456999999999999977 999999999998 45789999975
No 217
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.96 E-value=26 Score=37.84 Aligned_cols=219 Identities=12% Similarity=0.023 Sum_probs=150.9
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh-----hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038217 427 FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS-----RIMDEEGCLGSIVKVLRFGLTTEARENAAATLF 500 (715)
Q Consensus 427 ~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~-----~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 500 (715)
.+...|.+..|+..|..-+.+++..++.+..++.... +++. -+. ...-+.|..++..-.+++.--.+-..|+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~--~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE--RHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH--T--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH--hCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 3556789999999999999999999999999986654 3332 222 1112222233333225577788889999
Q ss_pred HhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC---hHHHHHhhCCh--hHHH
Q 038217 501 SLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA---VTALVGALGHE--GVAE 574 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~---v~~Lv~lL~~~--~~~~ 574 (715)
....++.....|.. ...+..+.+.+..++=++.-+|..++..|-. +......+...+. +.....+|.++ -.+.
T Consensus 149 ec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 99999888888888 8899999999988888999999999988654 4555566666543 55666677533 6678
Q ss_pred HHHHHHHHHhCCcchHHHHh---hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHhcCCcHHHHHH
Q 038217 575 EAAGALALIVRQPIGAAAVG---EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG--GASATERVLKAPALVGLLQA 649 (715)
Q Consensus 575 ~al~~L~~La~~~e~~~~i~---~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~~ 649 (715)
.++..|..|-.++.+...+. ....-+..++.+|++.|..+|-.|-.+..-+..+. ++.+...+.. . =+.|+.
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~-N--r~kLl~ 304 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK-N--REKLLR 304 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH-T--HHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH-H--HHHHHH
Confidence 89999999988877766553 33333788888999999999999999998888775 3345555555 3 344444
Q ss_pred Hh
Q 038217 650 LL 651 (715)
Q Consensus 650 Ll 651 (715)
.+
T Consensus 305 fl 306 (335)
T PF08569_consen 305 FL 306 (335)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 218
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.92 E-value=0.07 Score=62.49 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=40.1
Q ss_pred CcCccCcccccCceeCCCccHhhHHHHHHHHHhCC-CCCCCCccccccCC
Q 038217 292 FCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGH-RTCPKTGQMLVHDR 340 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~-~~CP~c~~~l~~~~ 340 (715)
+.|++|.+ ..+|+++.|||.||+.|+...+.... ..||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88888889999999999999988643 35999987665443
No 219
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.88 E-value=3.8 Score=47.95 Aligned_cols=203 Identities=11% Similarity=0.114 Sum_probs=133.0
Q ss_pred hcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHH
Q 038217 460 SIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS-LSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDA 537 (715)
Q Consensus 460 s~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A 537 (715)
+.....+...+ ..|+.+.|..+...+ ..+++..+..+|.. ++-. ..+. ...++.+...+..... -..-.+
T Consensus 491 A~~K~~~~~~I-k~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~-~~~~-----~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKI-KPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFP-GERS-----YEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred hhhHHhcCccc-cccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCC-CCch-----hhhhhhhcchhhhhHHHHHHHHH
Confidence 33444466777 899999999999887 88898888888872 1110 0000 2456666666543321 234578
Q ss_pred HHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHH-HHhhhCCcHHHHHHHhhcCChH
Q 038217 538 VTALFNLSTHTD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAA-AVGEEEMAVTGLVGMMRCGTPR 613 (715)
Q Consensus 538 ~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~-~i~~~g~~I~~Lv~lL~~~s~~ 613 (715)
+.+|.||++..+ .|.++++.-+++.+-.++. ++..+..++..+.||..++...+ .+++....++.....+..-..+
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 999999998554 7888888766666555553 56888999999999988777444 4555333367777777665666
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHH-HHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR-KAASLARVFQR 671 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~-~A~~lL~~l~~ 671 (715)
..-.+++++..+.... +..+............++.++.++.+.++. .....++++..
T Consensus 643 ~~lA~a~a~a~I~sv~-~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 643 FELAGAGALAAITSVV-ENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred Hhhhccccccchhhcc-hhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 6777777777666665 333332333245678888888888888764 33445554443
No 220
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.12 Score=54.74 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.+.|....|-||.+-..+.+.++|||+.| |+.-.-. .+.||.|++.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 45666779999999999999999999987 6654322 566999998653
No 221
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.73 E-value=35 Score=38.87 Aligned_cols=277 Identities=10% Similarity=0.075 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCCh-HHHH-Hhhcc-CCHHHHHHHHHHHhh-hhcCch
Q 038217 390 ATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAI-PHLR-NLLST-HNPVAQENSVTAMLN-LSIYDK 464 (715)
Q Consensus 390 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i-~~Lv-~lL~s-~d~~~~~~A~~aL~n-Ls~~~~ 464 (715)
+....++.....+ ....++.++..+.+.+.. ..-...+...+.| -.++ .-++. ++..++-.|+.+|.+ |-...+
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666544 455678899999998853 3333444444443 2333 34444 577889999999988 433222
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
|-..=-...-.+...++.-+.. +.+++..|..+|..+-..- ..-..+.+ .-....+.+.+++.++++...|+..-..
T Consensus 212 nf~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWst 289 (858)
T COG5215 212 NFCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWST 289 (858)
T ss_pred hhcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 2111110122334445555555 8899999999888775422 22223333 2223333455677788888777776544
Q ss_pred hhcCC---------------ccHHHH--HHhCChHHHHHhhC----C----h-hHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 544 LSTHT---------------DNCVRM--IEAGAVTALVGALG----H----E-GVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 544 Ls~~~---------------~n~~~i--v~aG~v~~Lv~lL~----~----~-~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
+|... .|.... .-+.++|.|+.+|. | . .....|...|...+.... ..|.+ +
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~-p 366 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMR-P 366 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHH-H
Confidence 44321 122222 23357999999993 1 1 444555555555542111 22222 1
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
. +.-+-.-+++.+-..+|.|+-++..+-.+..+.+...++ ...+|.+..+..+..--+|..+++.+-.+.++-..
T Consensus 367 V-l~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 367 V-LGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred H-HHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 2 333333566678888999999999988766444444444 34588899988877778899999999888887655
No 222
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=0.22 Score=42.80 Aligned_cols=27 Identities=19% Similarity=0.610 Sum_probs=24.6
Q ss_pred CCccHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 308 STGQTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 308 ~cghtfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.|.|.|-..||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 79999999999999998 7889999764
No 223
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.64 E-value=7.7 Score=42.44 Aligned_cols=231 Identities=16% Similarity=0.101 Sum_probs=129.4
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHH-HHHHhhhhcCchhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENS-VTAMLNLSIYDKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A-~~aL~nLs~~~~nk 466 (715)
+.|..++..|. +.+...|+.++-.|...+. +++.|..+...|.+..+++.+.. ++..+.-.+ +.+++-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 46788888887 4566788899999998886 58999999999999999998844 443243334 44444455555555
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc---------CChhHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL---------GTPRGKKDA 537 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~---------~~~~~~~~A 537 (715)
..+. ..+.+..++.++............. .....+-.++.+ +.+..+..++.. .....+..|
T Consensus 100 ~l~~-~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 100 HLLL-DRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhhh-chhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH--HHHHHHHHHHhccccccccCCcccccccHH
Confidence 5544 6677777788887110000000000 000000011110 111112222210 011223344
Q ss_pred HHHHHHhh--------------c-CCccHHHHHHhCChHHHHHhhCC------------------hhHHHHHHHHHHHHh
Q 038217 538 VTALFNLS--------------T-HTDNCVRMIEAGAVTALVGALGH------------------EGVAEEAAGALALIV 584 (715)
Q Consensus 538 ~~aL~nLs--------------~-~~~n~~~iv~aG~v~~Lv~lL~~------------------~~~~~~al~~L~~La 584 (715)
+.+|..++ . .+-.|..+.+.|++..++..+.+ -.....++.+|.+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 44544442 0 11246777888999998888630 034677999999876
Q ss_pred C-CcchHHHHhhhCC-cHHHHHH-HhhcC---ChHHHHHHHHHHHHHHhcCC
Q 038217 585 R-QPIGAAAVGEEEM-AVTGLVG-MMRCG---TPRGKENAVAALLELCRSGG 630 (715)
Q Consensus 585 ~-~~e~~~~i~~~g~-~I~~Lv~-lL~~~---s~~~ke~A~~~L~~L~~~~~ 630 (715)
. +.++...+..... .++.+.. ++..- .......++.++.|+..+++
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 5 3556666654422 1333333 33322 23335788899999998874
No 224
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.63 E-value=32 Score=38.31 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=137.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC---hhhHHHHHHcCChHHHHHhhccC-------CHHHHHHHHHHHhhhhcCch
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTG---KENRAFIAKAGAIPHLRNLLSTH-------NPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~---~~~r~~i~~~G~i~~Lv~lL~s~-------d~~~~~~A~~aL~nLs~~~~ 464 (715)
+...+..-+.++|..|+--+.+++|.+ ..+|..+.++=|.+.+=++|.++ |.-.+.-++++|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 334455556777888988888888875 36788899998899999999763 23345566777777777765
Q ss_pred h--hhhhhhhcCcHHHHHHHHhcCCCHH------HHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHH
Q 038217 465 N--KSRIMDEEGCLGSIVKVLRFGLTTE------ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKK 535 (715)
Q Consensus 465 n--k~~I~~~~g~i~~Lv~lL~~~~~~e------~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~ 535 (715)
- .+.|+ +.||.|..++..+.+.+ ..+.+-..|...+..+.....+.+ .|+++.+.++-.-.+ .....
T Consensus 96 lAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 96 LASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHH
Confidence 3 55666 67999999998764544 667888999999999888888888 899999998743222 12223
Q ss_pred HHHHHHHHhh----cCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-------cchHHHHhhhCCcHHH
Q 038217 536 DAVTALFNLS----THTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-------PIGAAAVGEEEMAVTG 602 (715)
Q Consensus 536 ~A~~aL~nLs----~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-------~e~~~~i~~~g~~I~~ 602 (715)
.|+..+.-+. ..++....+... |..+..=+. +...+-+.+.+|..+-.. +.-+..+....- -.-
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l-~~G 248 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYL-RTG 248 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHH-HHH
Confidence 3333332222 223344443322 222222221 446667777777743221 111211111111 233
Q ss_pred HHHHhhc-CChHHHHHHHHHHHHHHh
Q 038217 603 LVGMMRC-GTPRGKENAVAALLELCR 627 (715)
Q Consensus 603 Lv~lL~~-~s~~~ke~A~~~L~~L~~ 627 (715)
++.+|++ -++..|..|+....++..
T Consensus 249 ~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 249 VVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHhcccCchhcChHHHHHHHHHH
Confidence 4555655 356666666655544443
No 225
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.60 E-value=2.5 Score=43.62 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhh-cCchhhhhhhhhcCcHHHHHHHHh
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLS-IYDKNKSRIMDEEGCLGSIVKVLR 484 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs-~~~~nk~~I~~~~g~i~~Lv~lL~ 484 (715)
...|+..|+-++--++..|..+.....+..|+.+|. +..+.++..++.+|..+- .++.|...+- +.+++..++.+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE-~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFE-ELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHH-HhCCHHHHHHHHc
Confidence 456888898888888999999999999999999995 467899999999997765 4568888887 9999999999998
Q ss_pred cC-CCHHHHHHHHHHHH-Hhcc
Q 038217 485 FG-LTTEARENAAATLF-SLSA 504 (715)
Q Consensus 485 ~~-~~~e~~~~Aa~~L~-~Ls~ 504 (715)
+. .+.+++-.....|. +|..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 74 24567766666664 4443
No 226
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.48 E-value=0.16 Score=50.76 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCCCcCccCcccccCcee----CCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC
Q 038217 289 PKDFCCPIMLDLMRDPVI----ISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV 342 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~----~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~ 342 (715)
...|.|||++-.|.+-.. .+|||.|-...+.+.- ...|++|+.....++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 458999999999987653 3999999888777643 56999999999888744
No 227
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.26 E-value=1.8 Score=37.71 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcC
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG 486 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~ 486 (715)
|..++..|...+..-... ..-.-.-.+|+++..+.+.|..++..|+.+|.|++..-...-.-. -...++.|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 344555555555433222 111123578999999999999999999999999987654322111 356777777777665
Q ss_pred CCHHHHHHHHHHHHHh
Q 038217 487 LTTEARENAAATLFSL 502 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~L 502 (715)
+..++ +++..|-.|
T Consensus 81 -d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 81 -DENVR-SAAELLDRL 94 (97)
T ss_pred -chhHH-HHHHHHHHH
Confidence 55554 445555544
No 228
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=0.14 Score=57.35 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=33.4
Q ss_pred CCCCCCcCccCccccc----CceeCCCccHhhHHHHHHHHHhCCCCCC
Q 038217 287 SIPKDFCCPIMLDLMR----DPVIISTGQTYDRRSIARWMEEGHRTCP 330 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~----dPv~~~cghtfcr~cI~~w~~~~~~~CP 330 (715)
...+-+.|+||...|. .||.+-||||.|+.|.+.-+.. +||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 3445679999976663 7999999999999999988754 788
No 229
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.97 E-value=12 Score=43.94 Aligned_cols=207 Identities=16% Similarity=0.131 Sum_probs=138.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDE 472 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~ 472 (715)
..|+.+|.|.....++.|+..|-.+...+.+ -....|..|+...+.+.+++.-.---|...+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 5788999999888899999988776655443 2346788999999999999885555555555544433222
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccH
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNC 551 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~ 551 (715)
-|..+=+-|+.. +..+|..|+.+|..+ |.-+.. +=.+-++-+...+.++-+++.|+.||-.|-+ .++.+
T Consensus 109 --SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 --SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 255666677777 888887777766554 333333 2223333444555678999999999998865 45555
Q ss_pred HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 552 VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
.++++ .+=.+|. ++.+.-.|+.+...+| |+.-..|- +. -..|+.++-....-+|-..+..|..-|+.
T Consensus 179 ~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--PerldLIH--kn-yrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 179 DQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIH--KN-YRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred HHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhh--HH-HHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 54433 3444555 4578888888888876 45444442 33 57888888777777787777777766653
No 230
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.97 E-value=0.13 Score=50.84 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCcCccCcc-cccCce--eC--C-CccHhhHHHHHHHHHhCCCCCC--CCccccc
Q 038217 291 DFCCPIMLD-LMRDPV--II--S-TGQTYDRRSIARWMEEGHRTCP--KTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~-lm~dPv--~~--~-cghtfcr~cI~~w~~~~~~~CP--~c~~~l~ 337 (715)
+-.||+|.. .+-.|- ++ | |-|..|-+|..+.|..|...|| -|++-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 568999984 334443 22 4 9999999999999999999999 4765543
No 231
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=6.8 Score=45.75 Aligned_cols=246 Identities=18% Similarity=0.139 Sum_probs=150.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
..+.++....+.+.+.++-+--.+.+-++..|+. ..+++..+++=-.+.++.++..|++.+..+-... +.
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i~ 119 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----IT 119 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----HH
Confidence 4566677777777776666666677777666543 2356677777667788999998888777665332 22
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.....+|...++.+ ++.+|..|+..+..+-.. +. .++...|.++.|-.++.+.++.+..+|+.+|..+...+.+
T Consensus 120 --ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~--~~-~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 120 --EYLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDI--DP-DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred --HHHHHHHHHhccCC-ChhHHHHHHHHHHHhhcC--Ch-hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 44677888888887 888888887777766432 23 3444489999999999988899999999999999765432
Q ss_pred -HHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCC-c-chHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 551 -CVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQ-P-IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 551 -~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~-~-e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
-..-+..-.+..++..+. +-....-+.+|-.++.. + +.+.+. ..+..+...+.+.++...-.++.++.++..
T Consensus 194 ~~~~~l~~~~~~~lL~al~-ec~EW~qi~IL~~l~~y~p~d~~ea~----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALN-ECTEWGQIFILDCLAEYVPKDSREAE----DICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCcccccHHHHHHHHHHHH-HhhhhhHHHHHHHHHhcCCCCchhHH----HHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 111111122333444442 11112234444455442 1 112211 114455556666667777777777777766
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 038217 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRK 661 (715)
Q Consensus 628 ~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~ 661 (715)
.-.. +...+.+ .+-++|+.++.+.. ..+-.
T Consensus 269 ~~~~-~~~~~~~--K~~~pl~tlls~~~-e~qyv 298 (734)
T KOG1061|consen 269 YLKQ-VNELLFK--KVAPPLVTLLSSES-EIQYV 298 (734)
T ss_pred HHHH-HHHHHHH--Hhcccceeeecccc-hhhHH
Confidence 5422 3333332 34667777776665 44333
No 232
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.62 E-value=0.38 Score=43.54 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred CCCcCccCcccccCceeC----CCccHhhHHHHHHHHHh--CCCCCCCCccccccC
Q 038217 290 KDFCCPIMLDLMRDPVII----STGQTYDRRSIARWMEE--GHRTCPKTGQMLVHD 339 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~----~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~~ 339 (715)
.-+.|-||.+.-.|+-.+ .||...|..|.-..|+. -++.||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 468999999999998877 69999999999999985 468999998877654
No 233
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.08 E-value=14 Score=36.00 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH-HHHHH
Q 038217 403 SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL-GSIVK 481 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i-~~Lv~ 481 (715)
++..|..++-.+..++...+.. + ...+|.+...|.++++.++..|+.+|..|...+--| -.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHH
Confidence 3677889999999999765432 2 246889999999999999999999999997543211 22333 67777
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccC
Q 038217 482 VLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
.+... +++++..|...+..++..
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 77776 899999999999999775
No 234
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=0.32 Score=51.63 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCcCccCccccc------CceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc--cc---CCCCccHHHHHHHHHH
Q 038217 291 DFCCPIMLDLMR------DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQML--VH---DRLVPNRALRNLIVQW 354 (715)
Q Consensus 291 ~~~CpIc~~lm~------dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l--~~---~~l~pn~~l~~~i~~~ 354 (715)
.+.|-||.+.+. -|-.+.|||++|..|+.+.+..+.-.||.|+.+. .. ..+..|..+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 346777777664 4677789999999999998888788899999884 22 2367778777777665
No 235
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.91 E-value=24 Score=37.45 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=111.7
Q ss_pred HHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc--hhhh
Q 038217 391 TAELLI-QQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD--KNKS 467 (715)
Q Consensus 391 ~i~~Lv-~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~--~nk~ 467 (715)
.+..|| ..+++.+...|..|+..|...+--+.+. +. ..++.+...+..++..++..|+.++..+.... ..-.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 454554 6778999999999999999988655422 21 23667777777789999999999998885422 1111
Q ss_pred -------hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc----CChhHHHH
Q 038217 468 -------RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL----GTPRGKKD 536 (715)
Q Consensus 468 -------~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~----~~~~~~~~ 536 (715)
... ....+..+.+.|.+. +.+++..|+..+..|-..+.... .+..+..|+-+-.+ ++.+.+..
T Consensus 102 ~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 102 SESDNDESVD-SKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred chhccCccch-HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 122 356788888888888 88999999999988865544332 13445555555433 23445554
Q ss_pred HHHHHHHhhcCCccHHHHHHhCChHHHHHhhC
Q 038217 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 537 A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
-...+-..+......+..+..+.++.+-.+..
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 44555566766665556666667888777764
No 236
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=88.90 E-value=9.5 Score=45.23 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.-.+..+...+.+.++..|.-|++.+..+=.. + + -..+++++.+++.++++.++..|+-++.++-..+ +..
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~--e----l-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l 161 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--E----L-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDL 161 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcChH--H----H-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhh
Confidence 34455566666666777776666655443211 1 1 1245788999999999999999999999885443 356
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
.. +.|.+..+..++... ++.+..+|..+|..+-.
T Consensus 162 ~~-~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 162 YH-ELGLIDILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred hh-cccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 66 888999998888887 99999999999998854
No 237
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.67 E-value=1.3 Score=44.78 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhhcCchhhhhhhhhcCc-------HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh-HHHHhcccCc
Q 038217 447 VAQENSVTAMLNLSIYDKNKSRIMDEEGC-------LGSIVKVLRFGLTTEARENAAATLFSLSAVHEY-KKKIADESGA 518 (715)
Q Consensus 447 ~~~~~A~~aL~nLs~~~~nk~~I~~~~g~-------i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~I~~~~g~ 518 (715)
.-|..|+.+|++|+..+.|-..|. ..+- +..|+.+|....+.-.|+-|..+|.+|+..++. ...|+...++
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 568999999999999999988887 5443 333444444444788999999999999988774 4466666899
Q ss_pred HHHHHHHhhcC
Q 038217 519 VEALATLLRLG 529 (715)
Q Consensus 519 I~~Lv~LL~~~ 529 (715)
|..|+..+...
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999653
No 238
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.13 E-value=7.9 Score=43.54 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=105.0
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh------hHHHHHHHHHHHHhCCcchHH
Q 038217 518 AVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE------GVAEEAAGALALIVRQPIGAA 591 (715)
Q Consensus 518 ~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~------~~~~~al~~L~~La~~~e~~~ 591 (715)
....+.+++.+++...+..|+.-|..|+.+......++...++..|..++.|+ .+...++.++..|-.+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 34567778889999888889999999999999999999999999999999643 455566666666644322111
Q ss_pred HHhhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 592 AVGEEEMAVTGLVGMMRC--GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
..+.... |...+.++.- -...+-..|+..|-++..++. .....+.+ .--+..|...++.++.+.+.+|-++++.+
T Consensus 164 ~~~~~~f-V~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~-~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 164 ESVSNDF-VVSMASYVNAKREDANTLLAALQMLESLVLGSD-TLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eecccHH-HHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh-HHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1112222 4444444422 234456788899988888763 23334444 66788999999999999999999888766
Q ss_pred H
Q 038217 670 Q 670 (715)
Q Consensus 670 ~ 670 (715)
-
T Consensus 241 ~ 241 (713)
T KOG2999|consen 241 F 241 (713)
T ss_pred H
Confidence 4
No 239
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=88.08 E-value=1.4 Score=36.16 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-Ch--hHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-HE--GVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-~~--~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
-.|.|++++.|+++.+.....+-+.++|+.++++.. .+ .++--|..+|..++++.+|.+.+.+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 368899999999998888888888899999999985 33 788889999999999999998887654
No 240
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.88 E-value=13 Score=36.26 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCCh-HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAI-PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i-~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.++.+...|++.++.+|..|+..|..|...+. +--.|-+ ..++.+|.++|++++..|...+..++.... ...+
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~-~~~i 99 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRN-PNII 99 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-chHH
Confidence 56788899999999999999999999986541 1112444 778888899999999999999999887631 2222
Q ss_pred hhhcCcHHHHHHHHhcC--------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc----CChhHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFG--------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL----GTPRGKKDA 537 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~--------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~----~~~~~~~~A 537 (715)
. ..++.++..|... .+.+.+......|...-..+..+..+.. .|..-+.. .++...+++
T Consensus 100 ~---~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~------kl~~~~~~~~~~~~~~~~~d~ 170 (178)
T PF12717_consen 100 Y---NNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVE------KLCQRFLNAVVDEDERVLRDI 170 (178)
T ss_pred H---HHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHH------HHHHHHHHHcccccHHHHHHH
Confidence 2 3344455555432 2445566666666555444444444433 33333222 245566666
Q ss_pred HHHHH
Q 038217 538 VTALF 542 (715)
Q Consensus 538 ~~aL~ 542 (715)
+.+|.
T Consensus 171 ~~~l~ 175 (178)
T PF12717_consen 171 LYCLS 175 (178)
T ss_pred HHHHH
Confidence 66554
No 241
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.78 E-value=8.9 Score=38.35 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=120.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHH-------hhcc-----CCHHHHHHHHHHHhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRN-------LLST-----HNPVAQENSVTAMLNL 459 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~-------lL~s-----~d~~~~~~A~~aL~nL 459 (715)
-..+..+-.+++.+| |+.+|..--+..++....+-.. |....|++ +|+. ....-..+|+..|.-+
T Consensus 50 y~wicqlv~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQcl 127 (315)
T COG5209 50 YSWICQLVVGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCL 127 (315)
T ss_pred HHHHHHHhcCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHH
Confidence 344455667777665 8888877777777766666655 44444443 2222 1123456777788888
Q ss_pred hcCchhhhhhhhhcCcHHHHHHHH---hcCCC-HHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHH
Q 038217 460 SIYDKNKSRIMDEEGCLGSIVKVL---RFGLT-TEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGK 534 (715)
Q Consensus 460 s~~~~nk~~I~~~~g~i~~Lv~lL---~~~~~-~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~ 534 (715)
+.+++.|..++ ++-.---+-.+| .+... +-.|..+++++..|..+++ +-....-....||.+++++..|++-.+
T Consensus 128 aShPetk~~Fl-~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSk 206 (315)
T COG5209 128 ASHPETKKVFL-DAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSK 206 (315)
T ss_pred hcCcchheeee-ecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Confidence 99999999988 554332333333 33212 3468889999999988775 333333337899999999998887777
Q ss_pred HHHHHHHHHhhcCCccHHHHH----HhCChHH----HHHhh-C--ChhHHHHHHHHHHHHhCCcchHHHH
Q 038217 535 KDAVTALFNLSTHTDNCVRMI----EAGAVTA----LVGAL-G--HEGVAEEAAGALALIVRQPIGAAAV 593 (715)
Q Consensus 535 ~~A~~aL~nLs~~~~n~~~iv----~aG~v~~----Lv~lL-~--~~~~~~~al~~L~~La~~~e~~~~i 593 (715)
.-|+.++..+-.++..-..+. +.-+|.. ++.-+ + ...+...++.+-..|+..++.|..+
T Consensus 207 tvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 207 TVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 777777666655555433332 2222222 22222 1 3356666777766777666666654
No 242
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.58 E-value=2.4 Score=42.30 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLGS 478 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~~ 478 (715)
-.+.|+.-|+-++. .|+.|..+.++.+--.|-++|.. +...++..++.++..|..+++. -..+. ...++|.
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-tTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-TTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-hhhHHHH
Confidence 35778888888885 58999999988765556666643 2345778889999999877643 34444 7889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC---cHH----HHHH-HhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG---AVE----ALAT-LLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g---~I~----~Lv~-LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.++++..| ++-.+..|+-++..+-.+|..-..|++.-. +|. .++. +...++.+..|.++++-..||..+..
T Consensus 194 cLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 194 CLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhH
Confidence 99999998 777777777777777777765555554222 222 2221 22336678888888888888877766
Q ss_pred HHHH
Q 038217 551 CVRM 554 (715)
Q Consensus 551 ~~~i 554 (715)
|..+
T Consensus 273 R~lL 276 (315)
T COG5209 273 RALL 276 (315)
T ss_pred HHHH
Confidence 5443
No 243
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=86.97 E-value=26 Score=38.57 Aligned_cols=83 Identities=7% Similarity=0.159 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-c---CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHH
Q 038217 403 SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-T---HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGS 478 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s---~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~ 478 (715)
....-..|+..+..+....|..-..+.++|.++.++.-+. . .+.++...--.+|..+|.++.+.+.+. +.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~-~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVK-SSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHH-hcChHHH
Confidence 3455677888899999888999999999999999998877 3 457777777888899999999999999 8999999
Q ss_pred HHHHHhcC
Q 038217 479 IVKVLRFG 486 (715)
Q Consensus 479 Lv~lL~~~ 486 (715)
+++++.+.
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99999764
No 244
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.34 E-value=2.6 Score=42.65 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCcchHHHHhhhCC------cHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcH
Q 038217 572 VAEEAAGALALIVRQPIGAAAVGEEEM------AVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALV 644 (715)
Q Consensus 572 ~~~~al~~L~~La~~~e~~~~i~~~g~------~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i 644 (715)
-+..|+.+|+.|+-.+.|...|+.++. ++..|++++.. +++-.||-|+.+|.+||..+ +..+..+....+.+
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~-~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD-EAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc-HHHHHHHHHhhchH
Confidence 356777777777776667766666665 13344554443 57888999999999999887 44444555557899
Q ss_pred HHHHHHhhcCCHHHHHH
Q 038217 645 GLLQALLFTGTKRARRK 661 (715)
Q Consensus 645 ~~L~~Ll~s~~~~~k~~ 661 (715)
..|+.++.++...+...
T Consensus 219 ~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998775544443
No 245
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=86.12 E-value=88 Score=37.88 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc----cCC----HHHHHHHHHH
Q 038217 389 RATAELLIQQLAN-----GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS----THN----PVAQENSVTA 455 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-----~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~----s~d----~~~~~~A~~a 455 (715)
.+++..++..|.+ +..+.....+.-|+..++- +.||..+.+.|+++.|+..|. .+. ..+-+.-+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4566777777753 2333444455555556654 899999999999999998774 333 5666666666
Q ss_pred HhhhhcCchh------hhhhhhhcC----c---HHHHHHHHhcC---CCHHHHHHHHHHHHHhccCchhHHHHhcccCcH
Q 038217 456 MLNLSIYDKN------KSRIMDEEG----C---LGSIVKVLRFG---LTTEARENAAATLFSLSAVHEYKKKIADESGAV 519 (715)
Q Consensus 456 L~nLs~~~~n------k~~I~~~~g----~---i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I 519 (715)
+-.|...... ..... ..| . +..+++.+.+. .+..+....+.+|=+|+..++.+..... .-+
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~-~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~F 271 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSS-LSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EHF 271 (802)
T ss_pred HHHHHHHHhhhhhhhcccccc-ccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HHH
Confidence 6555322211 11111 121 3 55555555442 2567788889999999887765554432 223
Q ss_pred HHHHHHhhcC--ChhHHHHHHHHHHHhhcC----C---ccHHHHHHhCChHHHHHhhC----------ChhH--------
Q 038217 520 EALATLLRLG--TPRGKKDAVTALFNLSTH----T---DNCVRMIEAGAVTALVGALG----------HEGV-------- 572 (715)
Q Consensus 520 ~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~----~---~n~~~iv~aG~v~~Lv~lL~----------~~~~-------- 572 (715)
.+.+++=.-+ ...--...+..++.++.. . .-|..+++.|++...+.+|. ++++
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 3333331111 111112234555555432 1 24778899999999988883 1122
Q ss_pred HHHHHHHHHHHhCCcchHHHHhhhCCcHHHH
Q 038217 573 AEEAAGALALIVRQPIGAAAVGEEEMAVTGL 603 (715)
Q Consensus 573 ~~~al~~L~~La~~~e~~~~i~~~g~~I~~L 603 (715)
...++.+|.-||......+.++..+. |+.+
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~-l~~l 381 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIAEQL-LPLL 381 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhhH-HHHH
Confidence 34577777777765444444454455 5333
No 246
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.08 E-value=1.1 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=25.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhc
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~ 461 (715)
+|.+++++.+++++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998864
No 247
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.95 E-value=22 Score=39.61 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHhhcC-Cc--------cHHHHHHhC----ChHHHHHhhC--ChhHHHHHHHHHHH
Q 038217 518 AVEALATLLRLGTPRGKKDAVTALFNLSTH-TD--------NCVRMIEAG----AVTALVGALG--HEGVAEEAAGALAL 582 (715)
Q Consensus 518 ~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~--------n~~~iv~aG----~v~~Lv~lL~--~~~~~~~al~~L~~ 582 (715)
.+..|+.++.+ +.....|+.++.-|..+ ++ +...+.+.. .+|.|++..+ +.+.+...+.+|..
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 45567777754 55566677776666655 22 223333333 4666666664 34577888889988
Q ss_pred HhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHH
Q 038217 583 IVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQAL 650 (715)
Q Consensus 583 La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 650 (715)
+..+-....-+-+.+..+|.|++-|...+...+..++.+|..+....++-....+. .+++.|+.+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~---sLI~~LL~l 414 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS---SLIPRLLKL 414 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH---HHHHHHHhc
Confidence 87653322333444555788888888788899999999999999887433332221 246666554
No 248
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=71 Score=39.16 Aligned_cols=222 Identities=16% Similarity=0.143 Sum_probs=131.8
Q ss_pred HhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCch
Q 038217 386 EANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 386 ~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~ 464 (715)
+..+..+..|.+.|++.+..++-.|+.-+..++...| ..+++ .+|...+.++.- .+...-..|+.+|..|+.--=
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 3455788888899999999999999999999998877 23332 355666665554 345666788888888874221
Q ss_pred hhhhhhhhcCcHHHHHHHHhc----C---CCHHHHHHHHHHHHHhccCchhH--HHHhcccCcHHHH-HHHhhcCChhHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRF----G---LTTEARENAAATLFSLSAVHEYK--KKIADESGAVEAL-ATLLRLGTPRGK 534 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~----~---~~~e~~~~Aa~~L~~Ls~~~~~~--~~I~~~~g~I~~L-v~LL~~~~~~~~ 534 (715)
-..... ..+++.++.-|.- | ....+|..|+.+++.++..-+.. +... ......| ..-+.+.....+
T Consensus 413 Llps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCchhhHh
Confidence 111111 2455666655532 1 12357899999999997633211 1111 1122222 233445556778
Q ss_pred HHHHHHHHHhhcCCccH---------------------H-----HHHHh-CChHHHHHhh-----C--ChhHHHHHHHHH
Q 038217 535 KDAVTALFNLSTHTDNC---------------------V-----RMIEA-GAVTALVGAL-----G--HEGVAEEAAGAL 580 (715)
Q Consensus 535 ~~A~~aL~nLs~~~~n~---------------------~-----~iv~a-G~v~~Lv~lL-----~--~~~~~~~al~~L 580 (715)
..|..|+........|. . .+.+. |+..+++.-| . |..+++.+..+|
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 88888887776543332 1 11111 4444555444 1 778999999999
Q ss_pred HHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 581 ALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 581 ~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
..|+.. ..+-..... +++|+....+++...+.-+.
T Consensus 569 ~~Ls~~---~pk~~a~~~-L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 569 HKLSLT---EPKYLADYV-LPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHHHHh---hHHhhcccc-hhhhhhhhcCCChHHhhhhH
Confidence 998642 222233344 67777766556655554443
No 249
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.52 E-value=0.82 Score=48.26 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
...+-+-||+|.+.|..|+.= .-||.-|..|-.+- ...||.|+.++.. +.+++|..+++..+
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAVL 106 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhce
Confidence 456678999999999999744 77999999988643 5689999988863 36677777766543
No 250
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.36 E-value=12 Score=39.00 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=110.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcC-cHHHHHHHHhcC---CCHHHHHHHHHHHHHhccCchhHH
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEG-CLGSIVKVLRFG---LTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g-~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
..+...+.....+-+--++-.+.-+..+...-..+....+ ....+..++..+ .....+-.++.++.|+-.+...+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 3445555555444455556666666666655444441222 345555555443 256778889999999999988888
Q ss_pred HHhcccC-cHHHHHHHhhcC----ChhHHHHHHHHHHHhhcCC-ccH-HHHHHhCChHHHHHhh----CChhHHHHHHHH
Q 038217 511 KIADESG-AVEALATLLRLG----TPRGKKDAVTALFNLSTHT-DNC-VRMIEAGAVTALVGAL----GHEGVAEEAAGA 579 (715)
Q Consensus 511 ~I~~~~g-~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~~-~n~-~~iv~aG~v~~Lv~lL----~~~~~~~~al~~ 579 (715)
.+....+ .|...+..+... +...+..++++++|++..- .++ ..-.....+..+++.+ .|++..-+++.+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 8877445 455555554443 5678888999999997521 111 1111112345555533 378999999999
Q ss_pred HHHHhCCcchHHHHhhhCCcHHHHHHHh--hcCChHHHHHHH
Q 038217 580 LALIVRQPIGAAAVGEEEMAVTGLVGMM--RCGTPRGKENAV 619 (715)
Q Consensus 580 L~~La~~~e~~~~i~~~g~~I~~Lv~lL--~~~s~~~ke~A~ 619 (715)
|.+|...+.......+.=+ +...+.-. ....++.++.+.
T Consensus 226 lGtL~~~~~~~~~~~~~l~-~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLD-VKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCT-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcC-hHHHHHHHHhcccchHHHHHhc
Confidence 9999977777666666434 44443322 224566666553
No 251
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.25 E-value=6.1 Score=45.28 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSI 479 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~L 479 (715)
.++..++.-|+.-|....+.-|+.... +|..++.|..+.|..++..|+..|-.+|.+. +.-. .++..|
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~------kvaDvL 101 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS------KVADVL 101 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh------HHHHHH
Confidence 478888999999999999888877544 5778999999999999999999999999874 3333 345678
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhc
Q 038217 480 VKVLRFGLTTEARENAAATLFSLS 503 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls 503 (715)
+++|++. +......+-.+|..|-
T Consensus 102 ~QlL~td-d~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 102 VQLLQTD-DPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHTT----HHHHHHHHHHHHHHH
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHH
Confidence 8899887 5554444445554443
No 252
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=84.07 E-value=36 Score=40.74 Aligned_cols=264 Identities=16% Similarity=0.079 Sum_probs=155.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKT-GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
......++...++.+..++.....++.. +...+..+.....+|.+-.+..+.+..++...+....+++-.-. +..-+
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti- 435 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI- 435 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-
Confidence 4445566666677777777777776643 22345666777778888888888888888776666666643222 33222
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.-.++.+...++.. ..+++.+....+..+-.. +.....+.. ...+|.++.+-.....+.+...+..+.-++....
T Consensus 436 -~~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 436 -SELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred -cccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 34566666677766 777777777666444332 223333444 5667777777655556777777777777776444
Q ss_pred HHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 551 CVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
..+...-..+.+..-+.| -.+.++|...|..++..-. ...-.. .- ++.++.+...++-..|...+.++..|+.-
T Consensus 512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~-~~-i~k~L~~~~q~~y~~R~t~l~si~~la~v 587 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL-EE-IPKLLAMDLQDNYLVRMTTLFSIHELAEV 587 (759)
T ss_pred -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH-Hh-hHHHHHHhcCcccchhhHHHHHHHHHHHH
Confidence 222222122222222323 3778888888888775322 222222 22 55666555544455555555555544443
Q ss_pred CCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 629 ~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.|.+.. . .-+++.+..+..+..+.+|-+++..|..+-.
T Consensus 588 ~g~ei~----~-~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 588 LGQEIT----C-EDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred hccHHH----H-HHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 333222 2 2347888888889999999888876665544
No 253
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=0.17 Score=51.69 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCcCccCcccccCceeCCCccHh-hHHHHHHHHHhCCCCCCCCcccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTY-DRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtf-cr~cI~~w~~~~~~~CP~c~~~l 336 (715)
+..|.||++..+|-|.++|||.. |-.|=.+ -..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 77999999999999999999953 5555433 34799998754
No 254
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=83.87 E-value=85 Score=37.81 Aligned_cols=223 Identities=15% Similarity=0.072 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhhhhhh-hhcCcHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNKSRIM-DEEGCLGS 478 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk~~I~-~~~g~i~~ 478 (715)
+..+....++...|..+++....+...+- -.+...+..+. +..+-++..|+.+++..+. ...+. ...+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 34555555677777665544333332221 12223333333 3445566677777766651 11111 13667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh--cCChhHHHHHHHHHHHhhcCCccHHHHHH
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR--LGTPRGKKDAVTALFNLSTHTDNCVRMIE 556 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 556 (715)
|.++.... +.++....+.+|......+.....-.. ....|..+.+.- +++|.+...+-.++..|+....|...+.+
T Consensus 535 L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE 612 (1005)
T ss_pred HHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 77777665 788888888888888777765555544 567777777653 35677777788888888875556555554
Q ss_pred hCChHHHHHhhC--C----hhHHHHHHHHHHHHhCC-c-chHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHHHHHHh
Q 038217 557 AGAVTALVGALG--H----EGVAEEAAGALALIVRQ-P-IGAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 557 aG~v~~Lv~lL~--~----~~~~~~al~~L~~La~~-~-e~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
. .+|.++..|. + ..+..-++.+|..+.+. + .--..+. .-. .|++.+ .+.+++...-.+|-.+|..+-.
T Consensus 613 ~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~-FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 613 R-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYA-FPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred H-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHH-hHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 4 7999999995 2 36777788888866653 2 2222222 233 677877 4666778888899999988887
Q ss_pred cCCHHHH
Q 038217 628 SGGASAT 634 (715)
Q Consensus 628 ~~~~~~~ 634 (715)
.+.++..
T Consensus 690 ~~~eq~~ 696 (1005)
T KOG2274|consen 690 VTLEQLL 696 (1005)
T ss_pred cCHHHHH
Confidence 7644433
No 255
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.59 E-value=2.2 Score=38.60 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=55.0
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
-..+..|+.+|....+..+...|+.=|..+....+....+.+..|+-..+..|+.+++++++..|+.++..|-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3467889999955436667777887788887755655555555899999999999999999999999987664
No 256
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.50 E-value=54 Score=35.33 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=114.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hChhhHHHHHHc-CC-hHHHHHhhccC-----C--------HHHHHHHHH
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAK-TGKENRAFIAKA-GA-IPHLRNLLSTH-----N--------PVAQENSVT 454 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~-~~~~~r~~i~~~-G~-i~~Lv~lL~s~-----d--------~~~~~~A~~ 454 (715)
.+..+.+.|++........+++-|..+.. .+......+... +. .+.+.+++... + +.++.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36677788888888888888888888887 664555555543 44 45677777431 1 288888998
Q ss_pred HHhhhhcCc--hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hccCc----hhHHHHhcccCcHHHHHHHhh
Q 038217 455 AMLNLSIYD--KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS-LSAVH----EYKKKIADESGAVEALATLLR 527 (715)
Q Consensus 455 aL~nLs~~~--~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~----~~~~~I~~~~g~I~~Lv~LL~ 527 (715)
.++.+.... .-+..+....+.+..+.+-|..+ +.++....+.+|.. +..+. ..|..+-+ ..++..|+.+..
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS 214 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence 888875544 34777775788899999999886 88999988888874 44333 35666666 678899999876
Q ss_pred cCCh----hHHHHHHHHHHHhhcCCc
Q 038217 528 LGTP----RGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 528 ~~~~----~~~~~A~~aL~nLs~~~~ 549 (715)
..++ .....+-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 6555 778888899999997765
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.49 E-value=0.64 Score=49.34 Aligned_cols=44 Identities=16% Similarity=0.470 Sum_probs=36.2
Q ss_pred CCCcCccCccccc-Cce---eCCCccHhhHHHHHHHHHh-CCCCCCCCc
Q 038217 290 KDFCCPIMLDLMR-DPV---IISTGQTYDRRSIARWMEE-GHRTCPKTG 333 (715)
Q Consensus 290 ~~~~CpIc~~lm~-dPv---~~~cghtfcr~cI~~w~~~-~~~~CP~c~ 333 (715)
-++.|-.|++.+- .|- .++|.|.|.-.|.++++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3789999998763 333 3499999999999999964 678999998
No 258
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.42 E-value=0.63 Score=48.06 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=39.4
Q ss_pred CCCCCCCcCccCccccc---CceeCCCccHhhHHHHHHHHHhC--CCCCCCCc
Q 038217 286 LSIPKDFCCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEG--HRTCPKTG 333 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~--~~~CP~c~ 333 (715)
.....-|.||+..+.-. -|+.++|||..-...+.+.-+.| .+.||.|-
T Consensus 331 ~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 331 RHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 35667899999888765 48889999999999998887776 46899994
No 259
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.22 E-value=1.4 Score=47.37 Aligned_cols=36 Identities=8% Similarity=0.202 Sum_probs=28.7
Q ss_pred CCCCcCccCcccccC--ce-eCCCccHhhHHHHHHHHHh
Q 038217 289 PKDFCCPIMLDLMRD--PV-IISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d--Pv-~~~cghtfcr~cI~~w~~~ 324 (715)
..-|.|.||.+-..- -. .++|+|.||+.|...|+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 347899999976654 33 3499999999999999974
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=82.46 E-value=29 Score=41.56 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=138.3
Q ss_pred cCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHH
Q 038217 443 THNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEA 521 (715)
Q Consensus 443 s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~ 521 (715)
+..+...-.|.+++...+... .+...+- -.+...+..+.....+-++..|..++..-....-.... .++.+..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~---~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~---~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ---HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSL---QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH---HHHHHHHHhhccCCCCchhHHHHHHHHhccCceecccc---chHHHHH
Confidence 345555556666666554332 2222111 23344444454443555666666666655522111111 2577888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhh----CChhHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 522 LATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL----GHEGVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 522 Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL----~~~~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
|..+....+.++...-+.+|+-.+..+.-.....+.-+.|..+.++ .|+-+...+-.++..|+....+..-+.+ -
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-R 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-H
Confidence 8888776677888888899999988777777777777888877776 2777777888888877653333322222 2
Q ss_pred CcHHHHHHHhhcCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHH-hhcCCHHHHHHHHHHHHHHHH
Q 038217 598 MAVTGLVGMMRCGT----PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQAL-LFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L-l~s~~~~~k~~A~~lL~~l~~ 671 (715)
+||.|+.+|.... .....-|+.+|-.+.++.+...-..+.. -+.|++... +++++....+.|...|+-+-.
T Consensus 614 -~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 -LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred -HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 4899999988743 5556777788877888776554444443 246666664 567777888999988887654
No 261
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.29 E-value=7.4 Score=36.48 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~ 461 (715)
+.++..|..+|.++++.++..|+..|..+.+.. ......++..+++..|++++. ..++.++..++..+.+.+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999873 556777888899999999997 4678999999999988864
No 262
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=81.65 E-value=19 Score=37.29 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHH
Q 038217 571 GVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQ 648 (715)
Q Consensus 571 ~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~ 648 (715)
.....|+.+|.-++- ++..+....+..+ +..|+.++.. .++..+-+++.+|..+...++.. .....+ .+++..+.
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~-m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-~r~FE~-~~Gl~~v~ 182 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQN-MELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-QRDFEE-LNGLSTVC 182 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhh-HHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-HHHHHH-hCCHHHHH
Confidence 345667888887766 7888888888888 9999999954 67899999999999999888554 335555 88999999
Q ss_pred HHhhcC--CHHHHHHHHHHHHHHH
Q 038217 649 ALLFTG--TKRARRKAASLARVFQ 670 (715)
Q Consensus 649 ~Ll~s~--~~~~k~~A~~lL~~l~ 670 (715)
.++++. +...+-|..+-|-+.-
T Consensus 183 ~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 183 SLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHccccccHHHhHHHHHHHHHHH
Confidence 999876 6677888776444443
No 263
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=81.63 E-value=23 Score=40.87 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=104.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH---cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhc
Q 038217 397 QQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK---AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473 (715)
Q Consensus 397 ~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~---~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~ 473 (715)
..+-.-+++.+.-|+..||.+.++...+-..+-. ...+..++..+. .++.-+.-++.+|.|+-.+..+++.+....
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455667888899999999999876655544442 235555666555 668888899999999988888888777332
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCcHHHHHHHhhcC-----ChhHHHHHHHHHHHhhc
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGAVEALATLLRLG-----TPRGKKDAVTALFNLST 546 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~I~~Lv~LL~~~-----~~~~~~~A~~aL~nLs~ 546 (715)
..+-..+.-.+++.+..++...+.+.+|+|.. ..+-. .|..+.|...+... +-+..-.++.||.+|+.
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 22222222234443455666555556666542 11111 34555555554331 12344566778889998
Q ss_pred CCccHHHHHHhCChHHHHHhhC
Q 038217 547 HTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
.+.+..++...-.|..++.-++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHH
Confidence 8888888877766777777764
No 264
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=81.51 E-value=0.86 Score=45.22 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=44.4
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCC--CccccccCCCCccHHH
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPK--TGQMLVHDRLVPNRAL 347 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~--c~~~l~~~~l~pn~~l 347 (715)
+.+|||++....-|++- .|.|.|++..|..+++. ..+.||. |.+....+.+.-+..|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 57999999999999876 89999999999999873 3567887 7666666555544443
No 265
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.26 E-value=0.54 Score=57.27 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCCCcCccCccccc-CceeCCCccHhhHHHHHHHHHhCCCCCCCCc
Q 038217 287 SIPKDFCCPIMLDLMR-DPVIISTGQTYDRRSIARWMEEGHRTCPKTG 333 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~-dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~ 333 (715)
++-..+.|+||+++++ .-.+..|||-||..|+..|... +..||.|.
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 4555679999999999 5567799999999999999998 78899997
No 266
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.26 E-value=2.1 Score=35.13 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCcCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.-.|.||++-.- +|.+. .|+.-.||.|++-=.+.|+..||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 347999997543 45544 688888999999888899999999987654
No 267
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.93 E-value=3.3 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
+|.+++++.+.++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998753
No 268
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=80.88 E-value=63 Score=35.62 Aligned_cols=161 Identities=11% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC--------------------------C----HHHHHHHHHHHhh
Q 038217 409 VAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH--------------------------N----PVAQENSVTAMLN 458 (715)
Q Consensus 409 ~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--------------------------d----~~~~~~A~~aL~n 458 (715)
.|++.|..+....+..-..+.+.||+..++..|... + +--|...+..|++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 456666666666666666777788888887766421 0 0123444555544
Q ss_pred h----hc-Cchhhh---hhhhh-cCcHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh
Q 038217 459 L----SI-YDKNKS---RIMDE-EGCLGSIVKVLRFGL--TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR 527 (715)
Q Consensus 459 L----s~-~~~nk~---~I~~~-~g~i~~Lv~lL~~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~ 527 (715)
+ .. +..... .++ + ...+..|..++++.. -..+-..|+.++..+-.++.-.-.+..+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 3 22 222222 233 3 444566666776631 2456778888898888888877776666999999999988
Q ss_pred -cCC---hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh
Q 038217 528 -LGT---PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE 570 (715)
Q Consensus 528 -~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~ 570 (715)
.+- .++...--.+|..||.+......+.+.+.++.+++++.++
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 543 4555556677888999999999999999999999999654
No 269
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.81 E-value=6.9 Score=37.32 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=88.8
Q ss_pred hHHHHHhhc--cCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHH
Q 038217 434 IPHLRNLLS--THNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKK 510 (715)
Q Consensus 434 i~~Lv~lL~--s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~ 510 (715)
+..++..|. ...++++-.+.-++..+- +..+.... .-.-+-+-..+..+ +.+....+..++..|-. ..+...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 445555554 356778888888887773 33333333 12222333334443 45577778888877754 445666
Q ss_pred HHhcccCcHHHHHHHhh--cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC---Chh-HHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLR--LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---HEG-VAEEAAGALA 581 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~-~~~~al~~L~ 581 (715)
.|....|.++.++.++. ..+......++.+|..=|. ++++..++...+++.|-..++ ++. ++..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 77665899999999998 5566777777777665555 445555555567999999985 233 5666666554
No 270
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=80.50 E-value=76 Score=32.87 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=34.5
Q ss_pred cCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 038217 431 AGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS 503 (715)
Q Consensus 431 ~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 503 (715)
..++|.|+..|.. ..+-++..|..+|.++- . .+.++.+-+..+.. ..++++.+..++..+-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDP-CKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCC-ccccchHHHHHHHHHH
Confidence 3467888887765 34667778888887654 2 22333333333333 4555555555555553
No 271
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=80.46 E-value=93 Score=34.17 Aligned_cols=104 Identities=9% Similarity=0.053 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHH
Q 038217 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLG 477 (715)
Q Consensus 404 ~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~ 477 (715)
.++..+|+.+|.|+..++...|....+......+++++.. .-.+++..=+..|+-|+.-+ +.|.++..+.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 4566789999999999999999999988877777775543 11234444566666664433 55666655899999
Q ss_pred HHHHHHhcC--CC---------H---HHHHHHHHHHHHhccCch
Q 038217 478 SIVKVLRFG--LT---------T---EARENAAATLFSLSAVHE 507 (715)
Q Consensus 478 ~Lv~lL~~~--~~---------~---e~~~~Aa~~L~~Ls~~~~ 507 (715)
.+...|... .+ + +..-.++.++||+..+..
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 999999642 11 1 223456777888876543
No 272
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.22 E-value=45 Score=37.15 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=111.5
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh-hcCCh----hHHHHHHHHHHHhhcCCc
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL-RLGTP----RGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL-~~~~~----~~~~~A~~aL~nLs~~~~ 549 (715)
.+..++.+..+..+...+..++..+..|..--.....+ ...+..+..-+ ..... ....-.+|....|.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 56667777666545666777777777665421111111 12333333333 12222 233333444444443222
Q ss_pred cHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCC-cch-------------HHHHhhhCCcHHHHHHHhhcCChHHH
Q 038217 550 NCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQ-PIG-------------AAAVGEEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~-~e~-------------~~~i~~~g~~I~~Lv~lL~~~s~~~k 615 (715)
-. ....+..|+.+|+++.+...+...+..|... ++. |+.+.. .. +|.|++-.+..+...|
T Consensus 267 ~~----~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~-~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 267 PL----ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QV-LPKLLEGFKEADDEIK 340 (415)
T ss_pred ch----HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HH-HHHHHHHHhhcChhhH
Confidence 11 1134667888888888888888888887664 221 222222 22 5777777777677789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 616 ENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 616 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
.+.+.+|.++..+-+..+...-. ..++|.|++-+...++..+..+-..|..+-+..
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999988754432222 337888888888888888888877776665543
No 273
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.87 E-value=6.8 Score=37.39 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=77.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH-HcCChHHHHHhhc--cCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIA-KAGAIPHLRNLLS--THNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~--s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.++-..+..++.+....++..+..+.-.-++.-..+. ..|.++.++.+.. +.+..++..++.+|..-+.+...|..|
T Consensus 46 ~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I 125 (157)
T PF11701_consen 46 DFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI 125 (157)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC
T ss_pred HHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3444445555555677888888887766677766666 4588999999998 788889998888888888888878888
Q ss_pred hhhcCcHHHHHHHHhcCCCHH-HHHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFGLTTE-ARENAAATLFS 501 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e-~~~~Aa~~L~~ 501 (715)
. ..+++.|-+.++.+.+.. .|..|+-.|..
T Consensus 126 ~--~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 126 S--KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp H--HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7 678899999997653455 67777766654
No 274
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.82 E-value=47 Score=39.12 Aligned_cols=188 Identities=16% Similarity=0.199 Sum_probs=96.5
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch----
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE---- 507 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---- 507 (715)
..+|.+...|.+.+.-++.+|+.+++.+-.. -..+. ..+-+.+-++|....++..+.+|.-.|+..-....
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl 208 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL 208 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence 4567777778888888999998888776544 22333 56667777777776677888888766655432111
Q ss_pred --hHHHHhcccCcHH--HHHHHhhc---CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHH
Q 038217 508 --YKKKIADESGAVE--ALATLLRL---GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGAL 580 (715)
Q Consensus 508 --~~~~I~~~~g~I~--~Lv~LL~~---~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L 580 (715)
+-..|.. -|.+- .+|+++.. .++..+..-+.+|+||-...+.-..+-.+|. |+.+-.++.....|+..+
T Consensus 209 ~~~idqi~~-~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~t---lv~lS~~p~alk~Aa~~~ 284 (948)
T KOG1058|consen 209 LSNIDQIPS-FNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGT---LVTLSNDPTALKAAASTY 284 (948)
T ss_pred HhhHhhccC-ccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcce---EEEccCCHHHHHHHHHHH
Confidence 1112221 11111 22333322 3455555666777777655544433333332 222223444444444433
Q ss_pred HHH-hCCcchHHHHhh--------hC------CcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 581 ALI-VRQPIGAAAVGE--------EE------MAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 581 ~~L-a~~~e~~~~i~~--------~g------~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
..| ...+++...++- .+ +++--++.+|.+.+-..++.++.+.+.|...
T Consensus 285 i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 285 IDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 333 233333322211 00 0122233344445666777777776666654
No 275
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=79.60 E-value=27 Score=39.68 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=109.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHH-------------H---HcCChHHHHHhhcc-------CCHHHHH
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFI-------------A---KAGAIPHLRNLLST-------HNPVAQE 450 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i-------------~---~~G~i~~Lv~lL~s-------~d~~~~~ 450 (715)
.+.+..+|.+.++..+|++-..-++.+..+.-..+ + -.+.+|.|+.||.. +|.....
T Consensus 267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm 346 (858)
T COG5215 267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM 346 (858)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence 33445566677766666665545554322211111 1 13478999999964 2345666
Q ss_pred HHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhc
Q 038217 451 NSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 451 ~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
.|..+|-..+.... ..|+ .. ++.-+-.-++++ +..-|+.|+-++.+.-..+. ....++ +.++|.+..++.+
T Consensus 347 aA~sCLqlfaq~~g--d~i~-~p-Vl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D 419 (858)
T COG5215 347 AASSCLQLFAQLKG--DKIM-RP-VLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSD 419 (858)
T ss_pred hHHHHHHHHHHHhh--hHhH-HH-HHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhccc
Confidence 66666655553332 3444 32 444444445565 77778888888877754332 344454 5899999999876
Q ss_pred CChhHHHHHHHHHHHhhcCCccHHHHH-HhCChHHHHHh-----hCChhHHHHHHHHHHHHhCC
Q 038217 529 GTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGA-----LGHEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~n~~~iv-~aG~v~~Lv~l-----L~~~~~~~~al~~L~~La~~ 586 (715)
..--++..+++++..++.+- ..++ ..|.++..+.. ...+.+..++.+...||+.+
T Consensus 420 ~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 420 SCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred ceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 55677888889988887532 1111 23444443333 23567888888888888764
No 276
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.31 E-value=1.4e+02 Score=35.34 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
+-+...|.--++-|+..+..++.-+. ..|..+..+|.+.++.+.-.|+.+|..|+.++.
T Consensus 217 ~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~ 275 (948)
T KOG1058|consen 217 SFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT 275 (948)
T ss_pred CccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHH
Confidence 34455666677777777766554433 345667777776666666666655555554443
No 277
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=79.08 E-value=0.92 Score=52.40 Aligned_cols=50 Identities=18% Similarity=0.470 Sum_probs=41.8
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~ 338 (715)
..++.||||.+...+|+.+.|.|.||+.|+..-|.. +...||.|+.....
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 347799999999999999999999999999887764 35689999855543
No 278
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.03 E-value=14 Score=34.19 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHHcCChHHHHHhhcc---CCHHHHHHHHHHHhhhhcC
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKE-NRAFIAKAGAIPHLRNLLST---HNPVAQENSVTAMLNLSIY 462 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---~d~~~~~~A~~aL~nLs~~ 462 (715)
+..+..|..+|+++++.++..|+..|..+.+.... .+..+....++..|++++.. .+..++..++..+.+.+..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999987654 66677777888889999975 4789999999999888643
No 279
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.47 E-value=13 Score=34.27 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~ 461 (715)
+..+..|..+|.++++.++..|+..|..+.+.. ...+..+...+++..|+.+++.. .+.++..++..+...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999873 56677788889999999999873 24489988888887764
No 280
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=77.47 E-value=27 Score=41.73 Aligned_cols=188 Identities=15% Similarity=0.079 Sum_probs=117.4
Q ss_pred HHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHH--HHHHHHhcCCCH
Q 038217 413 EIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLG--SIVKVLRFGLTT 489 (715)
Q Consensus 413 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~--~Lv~lL~~~~~~ 489 (715)
.|.+...+++++...+.+.|++..+...++. ...+.+..++..+.|++...+++.... ....+. .+-.++.. ++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~-~~~~~~~~~f~~~~~~-w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLM-IFEFIDFSVFKVLLNK-WDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHhh-cch
Confidence 7778899999999999999999999999986 567899999999999998876655554 222222 22223333 344
Q ss_pred -HHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh-hcCCccHHHHHHhCChHH-HHHh
Q 038217 490 -EARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL-STHTDNCVRMIEAGAVTA-LVGA 566 (715)
Q Consensus 490 -e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL-s~~~~n~~~iv~aG~v~~-Lv~l 566 (715)
+.-.+|+.+|..+..+.+.....+ .+..+...+... ........++.....+.+ +..+
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~~~-------------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~i 632 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTECV-------------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRI 632 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCcccc-------------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHH
Confidence 777888888888766544311111 111222222211 222333333333334444 4445
Q ss_pred hC---ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhh-cCChHHHHHHHHHH
Q 038217 567 LG---HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMR-CGTPRGKENAVAAL 622 (715)
Q Consensus 567 L~---~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~-~~s~~~ke~A~~~L 622 (715)
+. .++.+--|++.+.++.. .+++...+.+.|+ ++.+.++-. +.....++.+..++
T Consensus 633 l~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 633 LRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNG-FELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred hcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccc-hhhhhhcchhHHHHHHHHHHHHHh
Confidence 53 56778889999999877 4667777777777 777776332 12344455554444
No 281
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.40 E-value=9.4 Score=34.75 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=56.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-----cC---CHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF-----TG---TKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-----s~---~~~~k~~A~~lL~~l~~ 671 (715)
+.-|.+=|...++-+|-.|+.+|..+|..+++..+..+.+...+|..+.+.-. .| ...++.+|.+++.++-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 34555556667899999999999999999988888888886667888888776 33 44678888899988754
No 282
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.95 E-value=81 Score=36.75 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=52.7
Q ss_pred cchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhh------HHHHHH
Q 038217 54 FQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNH------SISGHF 127 (715)
Q Consensus 54 ~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~------~i~~~f 127 (715)
-.+++-.+..+++..+..-++||...++ .|.-..-|+.-+..|..+..+.+.+... +.++.++ .+...+
T Consensus 179 ~l~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l 253 (563)
T TIGR00634 179 DRQQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGL 253 (563)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHH
Confidence 3455667788999999999999998776 3444666777777777777777777655 2222332 455566
Q ss_pred HHHHHHHHHH
Q 038217 128 HDLNQEISTL 137 (715)
Q Consensus 128 ~~~~~~l~~~ 137 (715)
..+.+.+...
T Consensus 254 ~~~~~~l~~~ 263 (563)
T TIGR00634 254 GEAQLALASV 263 (563)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 283
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=76.55 E-value=4.9 Score=44.39 Aligned_cols=178 Identities=15% Similarity=0.078 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-----Cch---h-HHHHhcccCc
Q 038217 448 AQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-----VHE---Y-KKKIADESGA 518 (715)
Q Consensus 448 ~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-----~~~---~-~~~I~~~~g~ 518 (715)
+...|..++.-+..+...+....-...+...+...|.+. .-..|+.+++++.+++. .+. . ...+|. .
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~---l 482 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL---L 482 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH---H
Confidence 455566666656666655433322567777777777665 67788999999988863 111 1 222222 2
Q ss_pred HHHHHHHhh---cCChhHHHHHHHHHHHhhcCCccH----HHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcc
Q 038217 519 VEALATLLR---LGTPRGKKDAVTALFNLSTHTDNC----VRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 519 I~~Lv~LL~---~~~~~~~~~A~~aL~nLs~~~~n~----~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e 588 (715)
+..++..-. ..+.+++.+|..+|.|+...-+-. -.....|.+..+....- .-.++.+++.++.||-+++.
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 333333322 234688889999999997632210 01112233333333321 33889999999999988765
Q ss_pred hH-HHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcC
Q 038217 589 GA-AAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 589 ~~-~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~ 629 (715)
-+ +..-=++...+.|..++.+ .+-++|-+|+++|.......
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 42 2221133336888888776 57888999999987766543
No 284
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.50 E-value=9.9 Score=43.60 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.++..++......+..+|.+|++.|-.+|++++++-..+++ .|++||.++++.-....-.+|..|-..+
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD-----vL~QlL~tdd~~E~~~v~~sL~~ll~~d------ 127 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD-----VLVQLLQTDDPVELDAVKNSLMSLLKQD------ 127 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH-----HHHHHTT---HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH-----HHHHHHhcccHHHHHHHHHHHHHHHhcC------
Confidence 36788888888999999999999999999988777666654 7999999888655444444444443222
Q ss_pred hhhcCcHHHHHHHHh---cCCCHHHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVLR---FGLTTEARENAAATL 499 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~---~~~~~e~~~~Aa~~L 499 (715)
..+.+..|...+. ++ +..+|+.+...|
T Consensus 128 --~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl 157 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSG-DEQVRERALKFL 157 (556)
T ss_dssp --HHHHHHHHHHHHH---HS--HHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccC-chHHHHHHHHHH
Confidence 1233333333333 34 555666666555
No 285
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.29 E-value=1e+02 Score=37.75 Aligned_cols=237 Identities=15% Similarity=0.144 Sum_probs=141.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc---CchhhhhhhhhcC
Q 038217 398 QLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI---YDKNKSRIMDEEG 474 (715)
Q Consensus 398 ~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~---~~~nk~~I~~~~g 474 (715)
.|++.+.+.+...+..+..+-..+++|....-+.-.+|.++.-+......+|..-+.+|-.-.. +-..++.+
T Consensus 475 FLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqELl----- 549 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQELL----- 549 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHHH-----
Confidence 3567788889999999999888889999888888899999887776655566555544422111 01112222
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhc-------------------------
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRL------------------------- 528 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~------------------------- 528 (715)
.|.-+|+.+.+...+...+...+.|-..+ .+|+.+.+ .|.++.|-..++.
T Consensus 550 ---SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlRE-VGvLevLqddlkqhkll~gpdqysgvsehydrnpss~s 625 (2799)
T KOG1788|consen 550 ---SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLRE-VGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPS 625 (2799)
T ss_pred ---HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH-hhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCch
Confidence 24445665544444444555555554443 46666666 7777777665542
Q ss_pred --------------------CC--hhHHH------HHHHHHHHhh-cCCccHHHHHHhCChHHHHHhhCChhHHHHHHHH
Q 038217 529 --------------------GT--PRGKK------DAVTALFNLS-THTDNCVRMIEAGAVTALVGALGHEGVAEEAAGA 579 (715)
Q Consensus 529 --------------------~~--~~~~~------~A~~aL~nLs-~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~ 579 (715)
|+ ..... -.-.+|-.|- .+.+|...+.++.++..++.++-+++.+...+.+
T Consensus 626 f~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLri 705 (2799)
T KOG1788|consen 626 FKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRI 705 (2799)
T ss_pred hhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHH
Confidence 00 00000 0122333444 3566888899999998888888666666777777
Q ss_pred HHHHhC-Ccc--hHHHHhhhCCcHHHHHHHhhcCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcH
Q 038217 580 LALIVR-QPI--GAAAVGEEEMAVTGLVGMMRCGT------------PRGKENAVAALLELCRSGGASATERVLKAPALV 644 (715)
Q Consensus 580 L~~La~-~~e--~~~~i~~~g~~I~~Lv~lL~~~s------------~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i 644 (715)
+..|-. .+. ..+. +-.+|+.|++|- ...+-.-+++||.+..-+|. ++....+ +|+.
T Consensus 706 vscLitvdpkqvhhqe-------lmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngs-aqrvFge-atGF 776 (2799)
T KOG1788|consen 706 VSCLITVDPKQVHHQE-------LMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGS-AQRVFGE-ATGF 776 (2799)
T ss_pred HHHHhccCcccccHHH-------HHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCch-heeehhc-cccH
Confidence 776643 222 2122 344555555421 12345566888888766543 4445555 7767
Q ss_pred HHHHHHhh
Q 038217 645 GLLQALLF 652 (715)
Q Consensus 645 ~~L~~Ll~ 652 (715)
..|..+++
T Consensus 777 slLlttLh 784 (2799)
T KOG1788|consen 777 SLLLTTLH 784 (2799)
T ss_pred HHHHHHHH
Confidence 77766654
No 286
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.12 E-value=2.2e+02 Score=35.76 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc----hhhhhhhhhcCcHH
Q 038217 403 SPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD----KNKSRIMDEEGCLG 477 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~----~nk~~I~~~~g~i~ 477 (715)
..+.+.+|+.-|+.++..- ++++ -..++|.++.|+.....++|..|+.+|..+...- ..-..|. -.-.+|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF-~eYlfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIF-PEYLFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhh-Hhhhhh
Confidence 4567889999999988542 2222 2357899999999999999999999998773221 1122333 467788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccC------------------chhHHH---------HhcccCcHHHHH-HHhhcC
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAV------------------HEYKKK---------IADESGAVEALA-TLLRLG 529 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~------------------~~~~~~---------I~~~~g~I~~Lv-~LL~~~ 529 (715)
.|-+++......-+|..=|..|..||.. +.+-.. ..+-...|..++ .||.+.
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence 8888887631333444434444444321 111100 000001122222 222222
Q ss_pred ChhHHHHHHHHHHHhhcCCccHHHHHHhC----ChHHHHHhhCChhHHHHHHHHHHHHhCCc--chHHHHhhhCCcHHHH
Q 038217 530 TPRGKKDAVTALFNLSTHTDNCVRMIEAG----AVTALVGALGHEGVAEEAAGALALIVRQP--IGAAAVGEEEMAVTGL 603 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~n~~~iv~aG----~v~~Lv~lL~~~~~~~~al~~L~~La~~~--e~~~~i~~~g~~I~~L 603 (715)
.+-++..-+..|.-||. .+.+.+ .++.|+.+|.|.+..-.+ +....++.-. -|... ++..- +|.|
T Consensus 591 ~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~-aFfdsI~gvsi~VG~rs-~seyl-lPLl 661 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRG-AFFDSIVGVSIFVGWRS-VSEYL-LPLL 661 (1431)
T ss_pred chHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHH-HHHhhccceEEEEeeee-HHHHH-HHHH
Confidence 22333333334444432 111111 245566666543222111 1222332211 11111 12233 6777
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 604 VGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 604 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
.+-|.++.+-+-..|+++|..||..+- ..+... ..+++-..-++-..+.=+++.+..++-...++.
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKLGL--LRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHhcc--cchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 778888889999999999999998751 111111 112444556677778888888777655554433
No 287
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.72 E-value=16 Score=34.42 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcC
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIY 462 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~ 462 (715)
+..+..|..+|.+.++.++..|+..|..+.+... ..+..++..+++..|++++.. .+..++...+..+...+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999998764 456677888999999999987 7899999999999888643
No 288
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.37 E-value=1.7e+02 Score=34.89 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
++..+..++..+..+....+..-+.-++..++--.++ .....-..+.+=..|++++..+...|+.++.+|..-.. .
T Consensus 203 drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r 278 (865)
T KOG1078|consen 203 DRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R 278 (865)
T ss_pred hHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h
Confidence 3456667777665543333333333333322221122 11111223444455666788899999999988864332 2
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 511 (715)
.+. -++..|=-++.+. ..-+|-.|..+|-.++.....+..
T Consensus 279 ~l~---pavs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 279 ELA---PAVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hcc---hHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCcccc
Confidence 222 2566666667776 778899999999999876554443
No 289
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=75.18 E-value=0.91 Score=40.06 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=27.8
Q ss_pred CCCCCCCcCccCcccccCceeC--CCccHhhHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII--STGQTYDRRSIA 319 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~--~cghtfcr~cI~ 319 (715)
..+.++-.|++|+..+.+++.. ||||.|...|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4566677899999988877754 999999999875
No 290
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.88 E-value=65 Score=39.32 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCCC------------HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc----------CCHH
Q 038217 390 ATAELLIQQLANGS------------PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST----------HNPV 447 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~------------~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----------~d~~ 447 (715)
..+-.+|..|++|- ....+..+..++....-|-..+..+.++|+...|...|-. +|..
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 45666777777641 1123444555566555566778889999998888776632 2333
Q ss_pred HHHHHHHHHhhh-----hcCchhhhhhhhhcCcHHHHHHHHh--------------------------cCCCHHHHHHHH
Q 038217 448 AQENSVTAMLNL-----SIYDKNKSRIMDEEGCLGSIVKVLR--------------------------FGLTTEARENAA 496 (715)
Q Consensus 448 ~~~~A~~aL~nL-----s~~~~nk~~I~~~~g~i~~Lv~lL~--------------------------~~~~~e~~~~Aa 496 (715)
+-..-...|+.+ +.+..|+..+. ..-.-..+..+|. .. .-..-..|+
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklh-tvITsqtftsLLresgllcvnler~viqlllElalevlvpp-fLtSEsaAc 877 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLH-TVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPP-FLTSESAAC 877 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhhee-eeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCc-hhhhhHHHH
Confidence 444455555443 33445544332 1111122222221 11 122233566
Q ss_pred HHHHHhccC-----------chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHH
Q 038217 497 ATLFSLSAV-----------HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALV 564 (715)
Q Consensus 497 ~~L~~Ls~~-----------~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv 564 (715)
+.++.+-.+ ...+..|.+ .|++..|++.+-...+..+-.-+..|..++. ++.|....-.+|+|..|+
T Consensus 878 aeVfelednifavntPsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvelll 956 (2799)
T KOG1788|consen 878 AEVFELEDNIFAVNTPSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLL 956 (2799)
T ss_pred HHHhhcccceeeeccCCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHH
Confidence 777766421 235777888 8999999999877778888888899999987 566888888899999999
Q ss_pred HhhC-----ChhHHHHHHHHHHHHhC
Q 038217 565 GALG-----HEGVAEEAAGALALIVR 585 (715)
Q Consensus 565 ~lL~-----~~~~~~~al~~L~~La~ 585 (715)
+++. ......+++.++..|+.
T Consensus 957 eIiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 957 EIIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred HHhhhhhcCCchHhhccHHHHHHHhh
Confidence 9874 34567777777777764
No 291
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=74.74 E-value=18 Score=33.76 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLST------HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~d~~~~~~A~~aL~nLs~ 461 (715)
+..+..+..+|+++++.++..|+..|..+.+.. ...+..|+..+++..|++++.. .+..++...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999999998754 5567788888999999999963 568899999988877753
No 292
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.68 E-value=16 Score=44.83 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred ChHHHHHhhcc----CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh
Q 038217 433 AIPHLRNLLST----HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY 508 (715)
Q Consensus 433 ~i~~Lv~lL~s----~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 508 (715)
+.|.++...+. +|+++|..|.-+|..+..-+.. +. ...++.|+.++....++-+|-|++..+..|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fc--es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FC--ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HH--HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45666666643 6899999999999998554432 22 345788888888554888899999888888764332
Q ss_pred HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHh
Q 038217 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIV 584 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La 584 (715)
-. .-.-+.|.+.|.+.++.+++.|+..|.+|-..+-.+. .|.++-+...|.|+ .+.+-|-.....|+
T Consensus 995 li-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 21 1234577788888889999999999999987654443 38888888888644 66666664455554
No 293
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.53 E-value=16 Score=34.26 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT-GTKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~~~~~k~~A~~lL~~l~ 670 (715)
+..|.+-|.++++..+-.|+.+|-.+..+.|......+.. ..++..|..++.. ..+.++++...+++...
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 6677777778899999999999999999999888888877 7899999999988 68888999766666544
No 294
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.28 E-value=3.4 Score=38.91 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=35.1
Q ss_pred CCCcCccCcccccCceeCCCcc-----HhhHHHHHHHHHh-CCCCCCCCcccccc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQ-----TYDRRSIARWMEE-GHRTCPKTGQMLVH 338 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cgh-----tfcr~cI~~w~~~-~~~~CP~c~~~l~~ 338 (715)
.+..|-||.+--. +..-+|.. ..-++|+++|+.. +...||.|+++...
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3568999988753 33446653 2378999999986 56799999987644
No 295
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=74.28 E-value=86 Score=37.54 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHHhhc-CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHH--HHHHHhhc-CCh
Q 038217 540 ALFNLST-HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVT--GLVGMMRC-GTP 612 (715)
Q Consensus 540 aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~--~Lv~lL~~-~s~ 612 (715)
+|++... .++++..+++.|++..+...++ +.++...++++|.+++...+.+....--.. +. .+-.++.. .+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~-~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEF-IDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHhhcchh
Confidence 8889886 5679999999999999999996 568999999999999875544333211111 12 22223333 333
Q ss_pred HHHHHHHHHHHHHHhcC
Q 038217 613 RGKENAVAALLELCRSG 629 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~ 629 (715)
+.-.+|+++|..+..++
T Consensus 573 ersY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDS 589 (699)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 55667777777777764
No 296
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.15 E-value=2 Score=43.94 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.4
Q ss_pred CccHhhHHHHHHHHHh------------CCCCCCCCccccccCC
Q 038217 309 TGQTYDRRSIARWMEE------------GHRTCPKTGQMLVHDR 340 (715)
Q Consensus 309 cghtfcr~cI~~w~~~------------~~~~CP~c~~~l~~~~ 340 (715)
|..-.|++|+-+||.. |.-+||.|++.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 4456899999999974 6679999999876544
No 297
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=73.93 E-value=1.2e+02 Score=37.24 Aligned_cols=229 Identities=16% Similarity=0.139 Sum_probs=136.0
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
++++..|..-|++.|..++..|+.-+..++.... ..++ ..+|..+++++....+..+=..|+-+|..|+...-...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3678888888999999999999999999976555 3333 46788888877766456777788999999987543322
Q ss_pred HHhcccCcHHHHHHHhhc----C----ChhHHHHHHHHHHHhhcCCc-c-HHHHHHhCChHHHH-HhhCCh--hHHHHHH
Q 038217 511 KIADESGAVEALATLLRL----G----TPRGKKDAVTALFNLSTHTD-N-CVRMIEAGAVTALV-GALGHE--GVAEEAA 577 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~----~----~~~~~~~A~~aL~nLs~~~~-n-~~~iv~aG~v~~Lv-~lL~~~--~~~~~al 577 (715)
... ...+|.+++-|.= | ...++..|+-++|.++..-+ + -..++.. ..+.|+ ..+=|+ ..+..|.
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHH
Confidence 222 1355555554421 1 24567788888888875322 1 1112221 111221 112144 5667777
Q ss_pred HHHHHHhCC----cchHH----------------------HHhhhCCcHHHHHH-Hhhc----CChHHHHHHHHHHHHHH
Q 038217 578 GALALIVRQ----PIGAA----------------------AVGEEEMAVTGLVG-MMRC----GTPRGKENAVAALLELC 626 (715)
Q Consensus 578 ~~L~~La~~----~e~~~----------------------~i~~~g~~I~~Lv~-lL~~----~s~~~ke~A~~~L~~L~ 626 (715)
++|.....- |.|-. .|.+..+...++++ ++.+ =+...|+.|+.+|..|.
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 777655431 22222 22333333445555 3332 27899999999999988
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHH----HHHHHHHHHHHHh
Q 038217 627 RSGGASATERVLKAPALVGLLQALLFTGTKRAR----RKAASLARVFQRC 672 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k----~~A~~lL~~l~~~ 672 (715)
...++ . .. .+.+++|+.-..+++...+ ..+.+++..++..
T Consensus 573 ~~~pk----~-~a-~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 573 LTEPK----Y-LA-DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKL 616 (1133)
T ss_pred HhhHH----h-hc-ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhh
Confidence 77532 2 23 4667778777766655433 2233455444443
No 298
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.89 E-value=1.6e+02 Score=33.19 Aligned_cols=264 Identities=11% Similarity=-0.039 Sum_probs=135.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
..+..+..+..+.+...+.-|++.|.+.+..-|+-...... -.+..++. |....+.+++-.++.+|..+...-.++..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 35666667777777788889999999999764444333222 23344444 44556788999999999887655544433
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcc---cCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADE---SGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~---~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.-.--.+.-.+..+..+. +++.|.+|..++..|+.....+.+++-. .+...+|+-.+++.++.. ..|+......|
T Consensus 337 ~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c 414 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTC 414 (533)
T ss_pred hhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhc
Confidence 221123333445566666 8899999988888887654433333221 223334444445555443 33555554444
Q ss_pred cCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHH-----H-hCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 546 THTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALAL-----I-VRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 546 ~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~-----L-a~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
.-.-.+.. ..++++..+ |..+. -...+.| | ..+++-.. +. .....-++.+.-+..++.|+
T Consensus 415 ~p~l~rke--~~~~~q~~l----d~~~~--~~q~Fyn~~c~~L~~i~~d~l~-~~-----~t~~~~~f~sswe~vr~aav 480 (533)
T KOG2032|consen 415 YPNLVRKE--LYHLFQESL----DTDMA--RFQAFYNQWCIQLNHIHPDILM-LL-----LTEDQHIFSSSWEQVREAAV 480 (533)
T ss_pred CchhHHHH--HHHHHhhhh----HHhHH--HHHHHHHHHHHHHhhhCHHHHH-HH-----HHhchhheecchHHHHHHHH
Confidence 43222222 223343322 11111 1111111 1 01111110 00 01111122223345565555
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
..--++.-+..+..+... .+.-+...|..+....-+.+.+.|...+..+.+
T Consensus 481 l~t~~~vd~l~~~~c~~~-d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 481 LKTTRSVDSLVRAACSSA-DGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHhHHHHHHHh-hHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 443333322212122111 112356778888888888998888888776643
No 299
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.14 E-value=84 Score=37.66 Aligned_cols=211 Identities=13% Similarity=0.085 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHH-
Q 038217 446 PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALAT- 524 (715)
Q Consensus 446 ~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~- 524 (715)
+.++-.|+..|..+....+.+..+. ..+++......|+.. +.-+--+|...+..|+.. + . ...+|.|.+
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~-~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev--y-----~-e~il~dL~e~ 810 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQ-GEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV--Y-----P-EDILPDLSEE 810 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh--c-----c-hhhHHHHHHH
Confidence 4567777888888877766666666 778888888888776 555666666666666543 1 1 344555555
Q ss_pred HhhcCC---hhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcc--hHHHHhhh
Q 038217 525 LLRLGT---PRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPI--GAAAVGEE 596 (715)
Q Consensus 525 LL~~~~---~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e--~~~~i~~~ 596 (715)
.....+ ++.+-..-.++.++.... +-..+..+ -.+...+..+++ ...+..++++|.+||.-.. +-..+.+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e- 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE- 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-
Confidence 222211 233333345666655422 22211111 223334444444 4668889999999986322 1122222
Q ss_pred CCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CCcHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 038217 597 EMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKA-PALVGLLQALLFTG-TKRARRKAASLARVFQ 670 (715)
Q Consensus 597 g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~-~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~ 670 (715)
. +.-++.+.+. |+.-.|+.|+-++..+-.+.|......+..- -.....+..+.... .+.+|-.|...+..+.
T Consensus 889 -v-~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 889 -V-LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred -H-HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 2 4555555544 7889999999999888776654433222110 11244444444443 5555666655444443
No 300
>PRK10869 recombination and repair protein; Provisional
Probab=73.14 E-value=1.9e+02 Score=33.66 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhh---hHHHHHHHHHHH
Q 038217 56 RRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQN---HSISGHFHDLNQ 132 (715)
Q Consensus 56 kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~---~~i~~~f~~~~~ 132 (715)
+++..+..+++..|..-++||.+.++ .|.-..-|.+-+..|..+..+.+.+... |-.+.+ ..+...+..+..
T Consensus 177 ~~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~l~~~~~ 251 (553)
T PRK10869 177 QQQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQNA---LQLLADGEEVNILSQLYSAKQ 251 (553)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcccHHHHHHHHHH
Confidence 34556777888999999999998776 3444566777777777777777777655 222233 244445555555
Q ss_pred HHHHH
Q 038217 133 EISTL 137 (715)
Q Consensus 133 ~l~~~ 137 (715)
.+...
T Consensus 252 ~l~~~ 256 (553)
T PRK10869 252 LLSEL 256 (553)
T ss_pred HHHHH
Confidence 44444
No 301
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.00 E-value=3.2 Score=45.64 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCcCccCc-ccccCce---eCCCccHhhHHHHHHHHHh-----CCCCCCC--CccccccCC---CCccHHHHHHHHHHHH
Q 038217 291 DFCCPIML-DLMRDPV---IISTGQTYDRRSIARWMEE-----GHRTCPK--TGQMLVHDR---LVPNRALRNLIVQWCT 356 (715)
Q Consensus 291 ~~~CpIc~-~lm~dPv---~~~cghtfcr~cI~~w~~~-----~~~~CP~--c~~~l~~~~---l~pn~~l~~~i~~~~~ 356 (715)
...|.||. +.+...- +..|+|-||..|..+++.. ....||- |...++... +.++ .++.++++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 56899999 4443312 3479999999999999983 3456766 555554432 3333 56666665555
Q ss_pred hcCC
Q 038217 357 AHGI 360 (715)
Q Consensus 357 ~~~~ 360 (715)
+.-+
T Consensus 225 e~~i 228 (384)
T KOG1812|consen 225 EEVI 228 (384)
T ss_pred HHhh
Confidence 4433
No 302
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.76 E-value=53 Score=40.56 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=99.5
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhh
Q 038217 392 AELLIQQLA----NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 392 i~~Lv~~L~----s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+++++..+ .++++.|..|.-+|..++--+.+.. .-..|.|+..+. ++++.++.|++.++.-|+.--.|
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 355555553 3578888888888888774432221 135788999886 79999999999999999865443
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
++ .-.-+.|-..|... +..+|..|.-+|.+|-.++-.|. .|.+..+..+|.+++++.+..|-.....|+.
T Consensus 995 --li--e~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiKV-----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 --LI--EPWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIKV-----KGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred --cc--chhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhHh-----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 11 22335566677776 89999999999999987654443 7999999999988887776666544444443
No 303
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.53 E-value=18 Score=34.82 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=67.6
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhhcCCcc--
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLSTHTDN-- 550 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~~n-- 550 (715)
..+..+..+|++. +.+.|..++.++..+.........+..-..-+..|+.+|+..+ ...++.|+.+|..|...-..
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556677788877 7888888888888777654332222222346778888888755 46677777777776543333
Q ss_pred --HHHHHHh---CChHHHHHhhCChhHHHHHHHHHHHHhC
Q 038217 551 --CVRMIEA---GAVTALVGALGHEGVAEEAAGALALIVR 585 (715)
Q Consensus 551 --~~~iv~a---G~v~~Lv~lL~~~~~~~~al~~L~~La~ 585 (715)
..++..- +.++.++.++++....+.++.+|..+-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3333221 3344455555445666777777776643
No 304
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.41 E-value=2.3 Score=45.39 Aligned_cols=52 Identities=31% Similarity=0.529 Sum_probs=45.5
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
...|.+++..|.+||...-|..|+...|..|++. +.+-|.+++++..++|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 5689999999999999999999999999999997 667788888887777655
No 305
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.36 E-value=28 Score=40.62 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.+.+..+++...+.+-.++.+++.-|..+...+ .-+..-+-.+....+..-|.+.-+.++..|+.+|..+-.++.+
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC---
Confidence 457788888888999999999999999988532 2333334456677777777778899999999999999765432
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHh
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIA 513 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~ 513 (715)
.+..++..++.+++++.+.|+|.. +|.+++.+..-...|+
T Consensus 160 --ee~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 160 --EECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCIV 199 (892)
T ss_pred --CcccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhHH
Confidence 134567788899998878999975 4566666554444443
No 306
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=71.80 E-value=4.9 Score=30.79 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCcCccCcccccCceeCCCccHhhHHHHHHHHHh-CCCCCCCCcc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-GHRTCPKTGQ 334 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-~~~~CP~c~~ 334 (715)
+.|.||.|++.+.. ..+...+...+... ....||.|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 47999999994432 24566666666554 3468999975
No 307
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=71.74 E-value=42 Score=32.08 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=79.2
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHH
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCV 552 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~ 552 (715)
...++.|..+|+++.+.+.|..+..+|..|-..|.++.+-.. +..+.-. -.+.+..... ..+.+....+ .-.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~--~~~~~~~~~~---~~l~~~~~~~-~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKS--SENSNDESTD---ISLPMMGISP-SSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCccc--cccccccchh---hHHhhccCCC-chH
Confidence 345778889999887899999999999999888887777433 1111000 0011111111 1111111111 233
Q ss_pred HHHHhCChHHHHHhhCChhH---HHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 553 RMIEAGAVTALVGALGHEGV---AEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~~~~~---~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
...-..++..|+..|+|+.+ ...++.++.++-.... ...+---+-.+|.++..++..++..+|.-..-|..
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~-~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLG-LKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC-cCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444578889999986533 2344555555443222 11122223338899999987777777765444433
No 308
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.42 E-value=2.8 Score=45.30 Aligned_cols=32 Identities=13% Similarity=0.369 Sum_probs=24.6
Q ss_pred CccHhhHHHHHHHHHh------------CCCCCCCCccccccCC
Q 038217 309 TGQTYDRRSIARWMEE------------GHRTCPKTGQMLVHDR 340 (715)
Q Consensus 309 cghtfcr~cI~~w~~~------------~~~~CP~c~~~l~~~~ 340 (715)
|..-.|..|+-+||.. |.-.||+||.++...+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3345688999999985 4568999999886654
No 309
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.21 E-value=5.9 Score=46.93 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCCCCCcCccCcc-cccCceeC-CCccHhhHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLD-LMRDPVII-STGQTYDRRSIARWMEE 324 (715)
Q Consensus 287 ~~~~~~~CpIc~~-lm~dPv~~-~cghtfcr~cI~~w~~~ 324 (715)
.++..-.|-+|.. ++..|..+ +|||.|-+.||.+....
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 4555568999986 44678876 99999999999998764
No 310
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.19 E-value=1.6 Score=43.93 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=33.5
Q ss_pred cCccCcccc-cCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 293 CCPIMLDLM-RDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 293 ~CpIc~~lm-~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
.|--|+..- .+|.-+ +|+|.||-.|...-. ...||.|++++....+.+|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 344444322 677755 999999999886432 2389999998766666555
No 311
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=70.61 E-value=23 Score=33.14 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=58.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT-GTKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|.++++..+-.|+.+|-.+..+.|......+.. .+++..|+.++.. ..+.+++++..+++.-..
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 6777777888999999999999999888888888878877 8899999999975 477889997666665543
No 312
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=70.49 E-value=4.6 Score=37.07 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCcCccCcccccC--ceeC-CCc------cHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 291 DFCCPIMLDLMRD--PVII-STG------QTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 291 ~~~CpIc~~lm~d--Pv~~-~cg------htfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
...|.||.+-..+ -|+. +|| |-||..|+.+|-.. ....|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccce
Confidence 5689999988876 6654 777 45999999999544 6677886654
No 313
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.22 E-value=30 Score=31.94 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc---CCHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT---GTKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s---~~~~~k~~A~~lL~~l~~ 671 (715)
+..|-+-|.++++..+-.|+.+|-.+..++|......+.. ..++..|+.++.. ..+.+++++..++.....
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6677777888999999999999999999998877777766 5677779999976 377889997666666544
No 314
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=69.70 E-value=71 Score=38.70 Aligned_cols=177 Identities=15% Similarity=0.069 Sum_probs=108.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh----ccCCHHHHHHHHHHHhhhhcCc-hhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL----STHNPVAQENSVTAMLNLSIYD-KNKSR 468 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL----~s~d~~~~~~A~~aL~nLs~~~-~nk~~ 468 (715)
.+-..+.+.+|..+.+|+..+.....+.. .....|....+..++ ++.+..+...|+..|..++..- ..-..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34445568899999999999998886432 223334444444433 3356667777777777776533 22222
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-C
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-H 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~ 547 (715)
. ..++.+.|.+-+..- ..++++.+..++-.... .+.....++.+...++++++..+......+-.... .
T Consensus 333 ~--~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 333 Y--AKNVFPSLLDRLKEK-KSELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred H--HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 2 257788888888765 66777766666654433 11113456677778888888887775555544332 2
Q ss_pred C-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 548 T-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 548 ~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
. .+...-.-.+.++.++...+ +.+++..|..++..+.
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2 23333333456777777775 4578888777777663
No 315
>PHA03096 p28-like protein; Provisional
Probab=69.52 E-value=3.3 Score=43.45 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=30.5
Q ss_pred CcCccCcccccC-ce------eC-CCccHhhHHHHHHHHHhC--CCCCCCCcc
Q 038217 292 FCCPIMLDLMRD-PV------II-STGQTYDRRSIARWMEEG--HRTCPKTGQ 334 (715)
Q Consensus 292 ~~CpIc~~lm~d-Pv------~~-~cghtfcr~cI~~w~~~~--~~~CP~c~~ 334 (715)
-.|.||++...+ |+ ++ .|.|.||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 479999875432 11 23 799999999999999862 356666654
No 316
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=69.39 E-value=3.1 Score=43.14 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=33.2
Q ss_pred CCcCccCccccc----CceeCCCccHhhHHHHHHHHHhCCCCCCCCcc
Q 038217 291 DFCCPIMLDLMR----DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 291 ~~~CpIc~~lm~----dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
++-||||.+.+. +|..++|||+.-..|++.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 455999998765 45567999987767777666666 99999976
No 317
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=68.53 E-value=1.5e+02 Score=30.76 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=126.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhh
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDE 472 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~ 472 (715)
|=..|.+.++..|.+|+..|......-+... ....-+..|+.+..+ .|......++.+|..|.....-.....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-- 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-- 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence 4456788899999999999988776544332 222336777777654 577777666777777763332111111
Q ss_pred cCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCc
Q 038217 473 EGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 473 ~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~ 549 (715)
...+..+.+-..- ......|..+..+|..|..+.. .-..++ .+.+..+++++.. .+|+....+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1122222221110 1245678888888888865432 222232 3678888888865 468888888888777765433
Q ss_pred cHHHHHHhCChHHHHHhh----C----Ch-hH-HHH-HHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGAL----G----HE-GV-AEE-AAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL----~----~~-~~-~~~-al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
. ...++. .+..+-... + |+ ++ .+. ..+....|+.++. ...-. +|.|++-|.++++..|.-+
T Consensus 157 ~-~~~~e~-lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~-~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 157 I-SEFAED-LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFA-FPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred c-chhHHH-HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHH-HHHHHHHHcCCCcHHHHHH
Confidence 2 222111 122222221 1 22 22 222 2223333443322 22233 8999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 038217 619 VAALLELCRSGG 630 (715)
Q Consensus 619 ~~~L~~L~~~~~ 630 (715)
+.+|...+..-+
T Consensus 229 L~tL~~c~~~y~ 240 (262)
T PF14500_consen 229 LQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHCC
Confidence 999987665444
No 318
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.53 E-value=2.7 Score=41.21 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=35.9
Q ss_pred CcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCcc
Q 038217 292 FCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
..|.+|..+...-+.- +||-.|-+.|+++++++ ...||-|+-
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhc
Confidence 4799999998876655 78888999999999998 889999964
No 319
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=67.95 E-value=31 Score=32.20 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT------GTKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s------~~~~~k~~A~~lL~~l~~ 671 (715)
+..|..-|.++++..+-.|+.+|-.+..+.|......+.. .+++.-|+.++.. ....++.+...+++.-+.
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777888888999999999999999999998888888887 7889899999953 367888886666655443
No 320
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.78 E-value=21 Score=29.37 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 449 QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 449 ~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
.+.|++++.+++..+.+-..+. +.++++.++++........+|-.|..+|.-+|...+..+.+-+
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4678999999998888877777 8899999999998766788999999999999988777666544
No 321
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.47 E-value=48 Score=31.79 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=72.3
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh-hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc----cCchh
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM-DEEGCLGSIVKVLRFGLTTEARENAAATLFSLS----AVHEY 508 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls----~~~~~ 508 (715)
+..+..+|.++++..+..++..+.-...... .+.+. ...-.+..++.+|++..+..+++.|..+|..|- ..++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4457778888888888888877776665543 24443 124468889999988767777787777776663 34444
Q ss_pred HHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 509 KKKIAD--ESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 509 ~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..++.. -++.++.++++++. ......++.+|..|-.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 555543 13566677777653 4566677777777654
No 322
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=67.25 E-value=85 Score=32.48 Aligned_cols=186 Identities=18% Similarity=0.155 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCc-HHHHHHHhhc----CChhHHHHHHHHHHHhhcCCcc
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGA-VEALATLLRL----GTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~-I~~Lv~LL~~----~~~~~~~~A~~aL~nLs~~~~n 550 (715)
+..+..++.+ |+.+.+--+..+++-+..+...-..+....+. ...+..++.. ..+...-.++++++|+-.+...
T Consensus 65 ~~~~~~~~~~-Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLS-WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCC-S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHh-CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 3444444443 46666778888888888877766666553333 4455555543 3467788899999999999988
Q ss_pred HHHHHHhC--ChHHHHHhh-C-----ChhHHHHHHHHHHHHhCC-cchHH-HHhhhCCcHHHHHHHhhc--CChHHHHHH
Q 038217 551 CVRMIEAG--AVTALVGAL-G-----HEGVAEEAAGALALIVRQ-PIGAA-AVGEEEMAVTGLVGMMRC--GTPRGKENA 618 (715)
Q Consensus 551 ~~~iv~aG--~v~~Lv~lL-~-----~~~~~~~al~~L~~La~~-~e~~~-~i~~~g~~I~~Lv~lL~~--~s~~~ke~A 618 (715)
+..+.+.. .+...+..+ . +..++..+..++.|++.. ...+. .=.+.. .+..+++.+.. .+++..-.+
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~-ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE-LLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH-HHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHhccccCCHHHHHHH
Confidence 88887653 233333333 2 347788888888999742 11110 000001 14455553332 578889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHH
Q 038217 619 VAALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASL 665 (715)
Q Consensus 619 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~l 665 (715)
+.+|.+|+..+ .. .....+..|+-..+..... ...++.++.+..+
T Consensus 223 LvAlGtL~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 223 LVALGTLLSSS-DS-AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHCCS-HH-HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccC-hh-HHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 99999999664 33 3444454676766666654 4488888887654
No 323
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=67.18 E-value=21 Score=33.30 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHH---HHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKR---ARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~---~k~~A~~lL~~l~ 670 (715)
+..|.+-|.++++..+-.|+.+|-.+..++|......+.. ..++..|..++.+. +.. +++++..++....
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 5677777888999999999999999999988888877776 67899999988765 444 7888665555544
No 324
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.96 E-value=3.9 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=25.3
Q ss_pred CCcCccCcccc--cCceeC--CCccHhhHHHHHH
Q 038217 291 DFCCPIMLDLM--RDPVII--STGQTYDRRSIAR 320 (715)
Q Consensus 291 ~~~CpIc~~lm--~dPv~~--~cghtfcr~cI~~ 320 (715)
.-.|++|++.+ .|.+++ .||-.|-|.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34899999999 788877 7999999999765
No 325
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=66.72 E-value=1.3e+02 Score=36.65 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=112.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHH
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKK 511 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~ 511 (715)
.+.+-.-+.+.+..-+..|+..+........ +...-...|.+..+..+...+.+..+...|+.+|..++..-. .+..
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3444445567788888888888877665554 111111244455555555554477788888888888865222 2222
Q ss_pred HhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcch
Q 038217 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIG 589 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~ 589 (715)
. .+.++.+++-+.+.....+..+..++-..+. ...-. ..++.++.+++ ++.+...+...+.......+.
T Consensus 334 ~---~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~l~-----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 A---KNVFPSLLDRLKEKKSELRDALLKALDAILN-STPLS-----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred H---HhhcchHHHHhhhccHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 2 4678888888876544444333333222221 11111 23455667775 678888877777765443222
Q ss_pred HHHHhh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 038217 590 AAAVGE---EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLK 639 (715)
Q Consensus 590 ~~~i~~---~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 639 (715)
.... -..+++.++....+....+|.+|..++..+-...|+.+...+..
T Consensus 405 --~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 405 --KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred --cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 12236777777777788999999998887776655554444433
No 326
>PHA02862 5L protein; Provisional
Probab=66.70 E-value=4.8 Score=37.21 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=32.9
Q ss_pred cCccCcccccCceeCCCcc-----HhhHHHHHHHHHh-CCCCCCCCcccccc
Q 038217 293 CCPIMLDLMRDPVIISTGQ-----TYDRRSIARWMEE-GHRTCPKTGQMLVH 338 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~~cgh-----tfcr~cI~~w~~~-~~~~CP~c~~~l~~ 338 (715)
.|-||.+--.+. .-+|.. -..+.|+++|+.. +...||.|+.+...
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 688888875444 345543 3578999999985 56799999987754
No 327
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.64 E-value=30 Score=40.34 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=79.8
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
.|.+..|++...+++..++...+.+|..+.........-+ -.+..+.+..-|... .+.+|..|+-+|..+-..+.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC-
Confidence 4677778888888999999999999988887444444444 456666666666655 7789999999999987433211
Q ss_pred HHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhhcCCccHHHHHH
Q 038217 511 KIADESGAVEALATLLRLGT-PRGKKDAVTALFNLSTHTDNCVRMIE 556 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~~n~~~iv~ 556 (715)
+..++..++.+++++. ++++..| |.|++.++.....+++
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 1345567888887644 5666655 4667766666555553
No 328
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=65.63 E-value=2.1 Score=31.63 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=22.9
Q ss_pred cccCceeCCCc-cHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 300 LMRDPVIISTG-QTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 300 lm~dPv~~~cg-htfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
-|.+--.+.|. |-.|..|+..-+.. ...||.|+.+++.+
T Consensus 9 Wf~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 9 WFANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp -S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred hhcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 34444556665 55599999987776 77899999988653
No 329
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.96 E-value=6.1 Score=31.78 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred ccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHH
Q 038217 310 GQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347 (715)
Q Consensus 310 ghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l 347 (715)
.+|||..|-+..+ +..||.|+-.+....+.|--.|
T Consensus 28 EcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 28 ECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred eeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 4699999999877 4589999998888777775544
No 330
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=64.45 E-value=46 Score=29.08 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred HHHHHHHHHH-HHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC
Q 038217 490 EARENAAATL-FSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 490 e~~~~Aa~~L-~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
|+|..|..-| +.+...--....++...+.+..|++..+-.+......++..|..|..++.....+.+.|++..|-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4455454333 344433334445555467888999998877777889999999999999999999999999999766654
Q ss_pred --ChhHHHHHHHHH
Q 038217 569 --HEGVAEEAAGAL 580 (715)
Q Consensus 569 --~~~~~~~al~~L 580 (715)
++..+...-.++
T Consensus 82 ~~~~~~~~~id~il 95 (98)
T PF14726_consen 82 NVEPNLQAEIDEIL 95 (98)
T ss_pred cCCHHHHHHHHHHH
Confidence 344444444333
No 331
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.35 E-value=65 Score=36.94 Aligned_cols=111 Identities=12% Similarity=0.160 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..+.+..+++.+.+.+-.++.+++..|+.+... -.--....-.|.+..|..-+-...+.++..|+.+|..+-....|-+
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 345777888888899999999999988887732 1111233445777887776666778999999999999876665532
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE 507 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 507 (715)
..+ ...++.+++...+.|+|.. +|.+++.++.
T Consensus 168 n~~-----~n~l~~~vqnDPS~EVRr~---allni~vdns 199 (885)
T COG5218 168 NRI-----VNLLKDIVQNDPSDEVRRL---ALLNISVDNS 199 (885)
T ss_pred HHH-----HHHHHHHHhcCcHHHHHHH---HHHHeeeCCC
Confidence 222 2367888888768888874 4566665543
No 332
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=62.00 E-value=1.5e+02 Score=37.08 Aligned_cols=227 Identities=13% Similarity=0.151 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---ChhhHHHHHHcCChHHHHHhhccCC-HHHHHHHHHHHhhhhc----
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKT---GKENRAFIAKAGAIPHLRNLLSTHN-PVAQENSVTAMLNLSI---- 461 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~---~~~~r~~i~~~G~i~~Lv~lL~s~d-~~~~~~A~~aL~nLs~---- 461 (715)
-.++.++..+.....++|..|+..|..+... -+..-..|.-.=..|.|-.|+.+.+ ..++..-+..|..|+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 4678888999989999999999888776622 1111112222234566666666522 2222222222222221
Q ss_pred --------------Cchhhhhhhh----------hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc---
Q 038217 462 --------------YDKNKSRIMD----------EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD--- 514 (715)
Q Consensus 462 --------------~~~nk~~I~~----------~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~--- 514 (715)
++.|-+...+ ..++=..++.+|... +.-++..-+..|.-|+. ..|.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~------FFGk~ks 614 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCV------FFGKEKS 614 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH------Hhhhccc
Confidence 1111100000 011222223333333 44455444444444432 2222
Q ss_pred ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchH-H
Q 038217 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGA-A 591 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~-~ 591 (715)
+.=.++.|+..|++.+...+..-...|..+|..-+-+ -++.+.+|.|.+-|.| +.+...|++.|..|+...--+ .
T Consensus 615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~ 692 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP 692 (1431)
T ss_pred ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH
Confidence 1235677778887776666555555555554433222 2566788888888874 589999999999998754332 2
Q ss_pred HHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 592 AVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
.+.+ - +....-+|-..+.-+|..++.++......
T Consensus 693 ~v~~--i-~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 693 AVKD--I-LQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHH--H-HHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2332 1 23333456567888999999998877654
No 333
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=61.99 E-value=6.3 Score=28.77 Aligned_cols=39 Identities=8% Similarity=0.294 Sum_probs=21.3
Q ss_pred CccCcccccCceeC---CCccHhhHHHHHHHHHhCC-CCCCCC
Q 038217 294 CPIMLDLMRDPVII---STGQTYDRRSIARWMEEGH-RTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~~~-~~CP~c 332 (715)
|-+|.++...-+.= .|+-.+-..|+..||.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 55677776665543 3777788899999998743 369987
No 334
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.95 E-value=26 Score=32.56 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccC-CHH---HHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTH-NPV---AQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~-d~~---~~~~A~~aL~nLs~ 461 (715)
+..+..|..+|.++++.++..|+..|..+.++. +..+..+....++..|.+++.+. ... +++.++..|...+.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999876 56677777778999999988753 333 88888888877754
No 335
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=61.63 E-value=1.9e+02 Score=29.41 Aligned_cols=137 Identities=14% Similarity=0.037 Sum_probs=84.8
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 393 ELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 393 ~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
+.|+..+. ..+++.+...++.|-.++.++..+... ++..|..+...++.+.+.-+...+..+...++.--
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34445443 567888899999999999765122222 24456666666666666666666666655443111
Q ss_pred hcCcHHHHHHH-----H---h-cCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHH
Q 038217 472 EEGCLGSIVKV-----L---R-FGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTAL 541 (715)
Q Consensus 472 ~~g~i~~Lv~l-----L---~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL 541 (715)
+.+..++.. . . .....+.....+..+..++...+++ . ...++.+..+| +..++..+..|+.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g-~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----G-VDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----H-HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233333333 1 1 1113455555567888887766661 1 45777888888 667778888999999
Q ss_pred HHhh
Q 038217 542 FNLS 545 (715)
Q Consensus 542 ~nLs 545 (715)
..||
T Consensus 147 ~~Lc 150 (234)
T PF12530_consen 147 APLC 150 (234)
T ss_pred HHHH
Confidence 9998
No 336
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=61.03 E-value=45 Score=30.78 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-T-KRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~-~~~k~~A~~lL~~l~ 670 (715)
+..|-+-|.++++..+-.|+.+|-.+..+.|......+.. .+++..|..++... + +.+++++..++..-.
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 5667777778999999999999999999988888878877 78899999988765 3 337777555555433
No 337
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=18 Score=35.88 Aligned_cols=44 Identities=11% Similarity=0.247 Sum_probs=35.5
Q ss_pred cCccCccccc--CceeCCCccHhhHHHHHHHHHh-------CCCCCCCCcccc
Q 038217 293 CCPIMLDLMR--DPVIISTGQTYDRRSIARWMEE-------GHRTCPKTGQML 336 (715)
Q Consensus 293 ~CpIc~~lm~--dPv~~~cghtfcr~cI~~w~~~-------~~~~CP~c~~~l 336 (715)
-|.+|...+. |.+.+.|-|.|.-.|+..|-.. ....||.|.+++
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 5888887664 6777899999999999999875 245799998874
No 338
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=60.58 E-value=1.3e+02 Score=33.05 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh---c-------CChhHHHHHHHHHHHhhc
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR---L-------GTPRGKKDAVTALFNLST 546 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~---~-------~~~~~~~~A~~aL~nLs~ 546 (715)
..|+.+|..|.....+...+.++.-||.+.+.-.-... ...+..|+.+-. . .+..+...|+++|+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccc-hHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 56788888885566777888999999987654333333 223334443321 1 123678899999999998
Q ss_pred CCc-cHHHHHHhCChHHHHHhhC---C----hhHHHHHHHHHHHHh-CCcchHHHH-hhhCCcHHHHHHHhhc
Q 038217 547 HTD-NCVRMIEAGAVTALVGALG---H----EGVAEEAAGALALIV-RQPIGAAAV-GEEEMAVTGLVGMMRC 609 (715)
Q Consensus 547 ~~~-n~~~iv~aG~v~~Lv~lL~---~----~~~~~~al~~L~~La-~~~e~~~~i-~~~g~~I~~Lv~lL~~ 609 (715)
+.. .+..+.+...+..+++.+. + ..+..--+..|--|. -.++.|.++ .+.+| ++.+.+++.+
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G-l~~lt~~led 198 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG-LELLTNWLED 198 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc-cHHHHHHhhc
Confidence 765 5666778888888887763 1 133344445554442 245677665 56677 8888888876
No 339
>PLN02189 cellulose synthase
Probab=59.48 E-value=5.3 Score=48.60 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=36.1
Q ss_pred cCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 293 CCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 293 ~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.|.||++-.- +|.+. .||--.||.|++-=.++|+..||.|+++..
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 8999998643 45544 588778999997767789999999998775
No 340
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=58.85 E-value=2e+02 Score=34.77 Aligned_cols=250 Identities=14% Similarity=0.062 Sum_probs=131.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KSRIMD 471 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~~I~~ 471 (715)
+.+-..+.+.++.++...+..+..++-..+.. . .-.-..|.+...+++.++.++.+....+.++-...+. ...++
T Consensus 401 p~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~- 476 (759)
T KOG0211|consen 401 PEVQVLVLDNALHVRSALASVITGLSPILPKE--R-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV- 476 (759)
T ss_pred HHHHHHHhcccchHHHHHhccccccCccCCcC--c-CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh-
Confidence 34433344555555555555444433221100 0 0012456666677788899998888777555433322 34444
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
....++.++.+-... ....+......+..++.... ...+.. ..-+.+...+.+-....++.|+..|..|+..-+
T Consensus 477 s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~-~~~~~~--~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-- 550 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG-VEFFDE--KLAELLRTWLPDHVYSIREAAARNLPALVETFG-- 550 (759)
T ss_pred hhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh-hHHhhH--HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--
Confidence 566777777776554 56666666666666655333 111211 122222222333334677778877777765333
Q ss_pred HHHHHhCChHHHHHhhCCh--hHHH---HHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALGHE--GVAE---EAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~~~--~~~~---~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
..-...-.++.++.+..++ ..+. .++..|..+.. ..+....- +|.+.++.....+.+|-+++..|..+-
T Consensus 551 ~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g-----~ei~~~~L-lp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 551 SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG-----QEITCEDL-LPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc-----cHHHHHHH-hHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 1111223466666665432 2223 33333333332 22333333 688888888788888988888887776
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHH
Q 038217 627 RSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~ 663 (715)
..-.. ...+ .-+.+.+..|..+.+..++-.|.
T Consensus 625 ~~L~~----~~~~-~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 625 KLLDE----SVRD-EEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred hhcch----HHHH-HHHHHHHHHhccCcccchhHHHH
Confidence 65322 2223 33455666666655555544443
No 341
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=58.03 E-value=6.5 Score=31.21 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHHh
Q 038217 312 TYDRRSIARWMEE 324 (715)
Q Consensus 312 tfcr~cI~~w~~~ 324 (715)
.|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 342
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.48 E-value=2.4e+02 Score=33.05 Aligned_cols=162 Identities=11% Similarity=0.059 Sum_probs=100.5
Q ss_pred HHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh---hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 438 RNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD---EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 438 v~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~---~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
+..|-....+.+--|+-+|..+..+...-..+.. ....+..++..+. + +...+..++.+|.|+-.+...+..+..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3444456677788888888887776644333331 2335666666665 3 567778889999999888777776655
Q ss_pred ccCcHHHHHHHh---hcCC-hhHHHHHHHHHHHhhc--CCccHHHHHHhCChHHHHHhhC-------ChhHHHHHHHHHH
Q 038217 515 ESGAVEALATLL---RLGT-PRGKKDAVTALFNLST--HTDNCVRMIEAGAVTALVGALG-------HEGVAEEAAGALA 581 (715)
Q Consensus 515 ~~g~I~~Lv~LL---~~~~-~~~~~~A~~aL~nLs~--~~~n~~~iv~aG~v~~Lv~lL~-------~~~~~~~al~~L~ 581 (715)
. ...+...+ ...+ ...+..-++...|++. ..++-+ .|..+.|..++. |-+..-+++.+|.
T Consensus 628 ~---~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 628 R---LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred H---HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3 33333322 2333 3455555555566653 122211 455555555553 2245566778888
Q ss_pred HHhCCcchHHHHhhhCCcHHHHHHHhhc
Q 038217 582 LIVRQPIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 582 ~La~~~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
+|+..+.+...+.+.-. +..++.-+++
T Consensus 701 tL~t~~~~~~~~A~~~~-v~sia~~~~~ 727 (745)
T KOG0301|consen 701 TLMTVDASVIQLAKNRS-VDSIAKKLKE 727 (745)
T ss_pred hhccccHHHHHHHHhcC-HHHHHHHHHH
Confidence 88877778888888777 8899887776
No 343
>PLN02436 cellulose synthase A
Probab=57.33 E-value=6 Score=48.23 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=36.5
Q ss_pred CcCccCcccc-----cCceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLM-----RDPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm-----~dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.|.||++-. -+|.+. .||.-.||.|++-=.++|+..||.|+++..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3899999764 245544 588888999997767789999999998775
No 344
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.60 E-value=87 Score=33.17 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..+...+..|.+.+|+..+.++..|+.|+...++....+. .-.|..+++-+++....+-..|+.++.-+...-+++ |
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i 164 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--I 164 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 3566677999999999999999999999976554433322 246777788788777888888888887775544432 2
Q ss_pred hhhcCcHHHHHHHH-hcC--CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVL-RFG--LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL-~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
. . .+..++..| .++ .+.=+++.|..+|..+..+-.- .-+++.|...++..+++.+..++....+
T Consensus 165 ~-~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 165 D-Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred H-H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2 1 233333333 332 1234677777777776543211 2345566666677777777666655433
No 345
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.48 E-value=9.6 Score=40.10 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=38.5
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh-CCCCCCCCcccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-GHRTCPKTGQML 336 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-~~~~CP~c~~~l 336 (715)
=+++-.|-||-+-..---.++|+|..|..|-.+.-.- ....||.|+..-
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3556789999988877677899999999998775442 367899998654
No 346
>PLN02195 cellulose synthase A
Probab=56.30 E-value=7.3 Score=47.16 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=36.3
Q ss_pred cCccCccc-----ccCceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 293 CCPIMLDL-----MRDPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 293 ~CpIc~~l-----m~dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.|.||++- +-+|.+. .||.-.||.|++-=.++|+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 79999983 3366655 688889999997666789999999998876
No 347
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=56.14 E-value=84 Score=27.45 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHH-HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIA-KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVL 483 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL 483 (715)
+.|..|+..|..-..++--.-..++ ..+.+..|+.-...++...++.++..|..|..++.....+. +-|+.+.+-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~-~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILR-DIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHH-HccHHHHHHHHH
Confidence 4677777776554433322222333 23444555555556677788999999999999998888888 899998866655
Q ss_pred hcCCCHHHHHHHHHHH
Q 038217 484 RFGLTTEARENAAATL 499 (715)
Q Consensus 484 ~~~~~~e~~~~Aa~~L 499 (715)
..- +...+...-.++
T Consensus 81 ~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 81 PNV-EPNLQAEIDEIL 95 (98)
T ss_pred hcC-CHHHHHHHHHHH
Confidence 433 555555554444
No 348
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.05 E-value=6.8 Score=45.36 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=34.3
Q ss_pred CCCCcCccCcccccCceeC--CCccHhhHHHHHHHHHhCCCCCCC-Ccc
Q 038217 289 PKDFCCPIMLDLMRDPVII--STGQTYDRRSIARWMEEGHRTCPK-TGQ 334 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~--~cghtfcr~cI~~w~~~~~~~CP~-c~~ 334 (715)
...|.|.||.--.+---.+ .|||....+|...||..|. .||. |+-
T Consensus 1026 ~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC 1073 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGC 1073 (1081)
T ss_pred cceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCc
Confidence 3457798887666555444 7999999999999999954 7887 553
No 349
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=55.91 E-value=34 Score=29.52 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~ 463 (715)
.....+..|.+..+-.|-.++..|+.+..... ...+.-.+++..+...|+++|+-+--+|+..|..|+...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 45566788888888899999999999997654 122222366677778888999999999999999987544
No 350
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.22 E-value=1.4e+02 Score=35.89 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHH-
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVG- 565 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~- 565 (715)
-...+..+...|..+....+.+..+.. .+.+...+++|++.++=+--+|+..+..||. +++ ..+|.|..
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~e~ 810 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLSEE 810 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHHHH
Confidence 345677777888888776655555555 7888888999988777666666666555653 333 34455555
Q ss_pred hhC--C---hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 038217 566 ALG--H---EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLK 639 (715)
Q Consensus 566 lL~--~---~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 639 (715)
..+ + .+.+...-.++.+++. ..+-...-. +..+...+..+++....-|-.++++|.++|....-.+...+.+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 222 0 1222222233333321 111111111 1224555555664444557888888888886542112222222
Q ss_pred cCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHH
Q 038217 640 APALVGLLQALLF-TGTKRARRKAASLARVFQR 671 (715)
Q Consensus 640 ~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~~ 671 (715)
++..++.+.. +|+.-.||.|..++..+-.
T Consensus 889 ---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 889 ---VLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred ---HHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 2444555554 4577778888777766543
No 351
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=55.18 E-value=6.4 Score=29.33 Aligned_cols=39 Identities=31% Similarity=0.653 Sum_probs=21.9
Q ss_pred CccCcccccC--ceeCCCcc-----HhhHHHHHHHHHh-CCCCCCCC
Q 038217 294 CPIMLDLMRD--PVIISTGQ-----TYDRRSIARWMEE-GHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~d--Pv~~~cgh-----tfcr~cI~~w~~~-~~~~CP~c 332 (715)
|-||++--.+ |.+.+|+- ..-+.|+.+|+.. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 4566654332 55666652 2367899999985 56788876
No 352
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=55.06 E-value=3.2e+02 Score=29.88 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=62.7
Q ss_pred hHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh-ccCchhHHH
Q 038217 434 IPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL-SAVHEYKKK 511 (715)
Q Consensus 434 i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L-s~~~~~~~~ 511 (715)
|..++.=|. +....++..++.-|+.-+.++.-+..+. ..|.+..+++.+....+......++++++.+ +.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~r-a~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFR-AHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHH-HcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 445555454 3456788888888888888889999999 9999999999995532443555555555544 444433333
Q ss_pred HhcccCcHHHHHHHhh
Q 038217 512 IADESGAVEALATLLR 527 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~ 527 (715)
+-. .+....+++++.
T Consensus 102 ~~~-~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLD-RDSLRLLLKLLK 116 (361)
T ss_pred hhc-hhHHHHHHHHhc
Confidence 333 667777788887
No 353
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.84 E-value=0.59 Score=37.70 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+..||.|...|..- .|+.+|..|-..+-. ...||.|++++..
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEe----CCEEECcccccccee--cccCCCcccHHHH
Confidence 46899999886532 266677777664322 4689999998753
No 354
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=54.80 E-value=7.1 Score=47.71 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=36.0
Q ss_pred cCccCcccc-----cCceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 293 CCPIMLDLM-----RDPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 293 ~CpIc~~lm-----~dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.|.||++-. -+|.+. .||--.||.|++-=.++|+..||.|+.+..
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 899999863 245544 688889999997666789999999998765
No 355
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=11 Score=35.93 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=33.0
Q ss_pred cCccCcccccCcee-------CCCccHhhHHHHHHHHHh-----CC-----CCCCCCcccccc
Q 038217 293 CCPIMLDLMRDPVI-------ISTGQTYDRRSIARWMEE-----GH-----RTCPKTGQMLVH 338 (715)
Q Consensus 293 ~CpIc~~lm~dPv~-------~~cghtfcr~cI~~w~~~-----~~-----~~CP~c~~~l~~ 338 (715)
-|-||..+--|-.+ +.||+.|..-|+..|++. +. ..||.|..++..
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 57777765544322 379999999999999985 11 369999887654
No 356
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.61 E-value=4e+02 Score=30.94 Aligned_cols=178 Identities=18% Similarity=0.106 Sum_probs=88.0
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh----hhh--hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-C
Q 038217 433 AIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS----RIM--DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-V 505 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~----~I~--~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~ 505 (715)
.+-.|+++|+.-+.+-.+....-+.. .. ...+. .+. +...++..+.+.+.++ .... ..|+.++..+.. .
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~-~~~~-~ea~~~~~~~~~~~ 387 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNK-KITP-LEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHHhh
Confidence 45567777776555444444443332 11 11122 222 2455777778888776 3222 122333333221 1
Q ss_pred chhHHHHhcccCcHHHHHHHhhcC----ChhHHHHHHHHHHHh----hcCCccHHHHHHhCChHHHHHhhC------Chh
Q 038217 506 HEYKKKIADESGAVEALATLLRLG----TPRGKKDAVTALFNL----STHTDNCVRMIEAGAVTALVGALG------HEG 571 (715)
Q Consensus 506 ~~~~~~I~~~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nL----s~~~~n~~~iv~aG~v~~Lv~lL~------~~~ 571 (715)
.... ...+..+..++.++ .+.....|+-++.+| |.+.+.+...+...+++.+...|. |..
T Consensus 388 ~~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 388 RYPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred hcCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 1111 33456677777643 234455555555555 444333322233346666666663 223
Q ss_pred HHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-c--CChHHHHHHHHHHHHHHhcCCH
Q 038217 572 VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR-C--GTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 572 ~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~-~--~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
-+...+.+|.|+.. +. . ++.+..++. . -+...|-.|+.+|..++...+.
T Consensus 462 ~~~~~LkaLGN~g~-~~---------~-i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 462 EIQLYLKALGNAGH-PS---------S-IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred heeeHHHhhhccCC-hh---------H-HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch
Confidence 34445666666531 11 1 444444444 1 3567899999999988765444
No 357
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=53.80 E-value=3.7e+02 Score=30.28 Aligned_cols=182 Identities=10% Similarity=0.090 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh-hHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhh
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLAKTGKE-NRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.|..++..++.. ..+.+..|+.+|..+.-++.+ ...... ...+..++..|+. .+...+.-|+.+|..++.+...+-
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 455666666643 567788999988887755421 111100 1234567788877 788899999999999987765321
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.=- ..-+|..+++.-+...+.-.+..+-.++.-|+..+... .|..+..++...+...--.++..+..|+..
T Consensus 366 ~Ds-tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 366 FDS-TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hch-HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 111 23345555555555523333444445566666655433 233344444444444444455555555432
Q ss_pred CccHHHH--HHhCChHHHHHhhC--ChhHHHHHHHHHHHH
Q 038217 548 TDNCVRM--IEAGAVTALVGALG--HEGVAEEAAGALALI 583 (715)
Q Consensus 548 ~~n~~~i--v~aG~v~~Lv~lL~--~~~~~~~al~~L~~L 583 (715)
-. +..+ +=-...|.+++.-. ...++..|+-.|..+
T Consensus 437 l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 437 LS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred cC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 11 1111 11145666666664 335666666666555
No 358
>PRK14707 hypothetical protein; Provisional
Probab=53.75 E-value=7.2e+02 Score=33.65 Aligned_cols=258 Identities=19% Similarity=0.176 Sum_probs=132.4
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchh-hhhh
Q 038217 394 LLIQQLA--NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKN-KSRI 469 (715)
Q Consensus 394 ~Lv~~L~--s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~n-k~~I 469 (715)
.|+.-.+ .++.+-+..+..-...++. .+..+..+ ..-+|..++.-++ -++.....+|+..|...-.++.. +..+
T Consensus 167 lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~ 244 (2710)
T PRK14707 167 LALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL 244 (2710)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC
Confidence 3444443 3444444444444444543 34555555 3345555555544 35555556666666555444444 4444
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHH-HHhccCchhHHHHhcccCcHHHHHHHhhc-CChhH-HHHHHHHHHHhhc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATL-FSLSAVHEYKKKIADESGAVEALATLLRL-GTPRG-KKDAVTALFNLST 546 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L-~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~-~~~A~~aL~nLs~ 546 (715)
....+-..+.-|.+=.+..+..+|+..| ..|+.+...+..+.. ..+...++-|.. .+... ...|..+-..|..
T Consensus 245 --~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~--q~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 245 --KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP--INVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred --ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH--HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 3444555555554422444444555444 466655555555543 233333333332 33333 3444444445655
Q ss_pred CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHH-HHHhCCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGAL-ALIVRQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKENAVA 620 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L-~~La~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~ 620 (715)
+++-+.. ...-.+...+..|+ |..+...|+..| ..|+.+++-+..+-. -+ +..+++-+.. +++..+ .|+.
T Consensus 321 d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~-~a~~lNalsKWp~~~~c~-~aa~ 396 (2710)
T PRK14707 321 DPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QG-VSSVLNALSKWPDTPVCA-AAAS 396 (2710)
T ss_pred cHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hH-HHHHHhhhhcCCCchHHH-HHHH
Confidence 5554433 33344666677775 555555555555 467777777776653 33 5777775554 344444 4444
Q ss_pred HH-HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHH
Q 038217 621 AL-LELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS 664 (715)
Q Consensus 621 ~L-~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~ 664 (715)
.| ..+. +. .+.++.+-. .|+-..|-.|.+=....+.+.|+.
T Consensus 397 ~LA~~l~-~d-~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 397 ALAEHVV-DD-LELRKGLDP-QGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred HHHHHhc-cC-hhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHH
Confidence 44 3444 32 456666654 666666666776665555555543
No 359
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=52.99 E-value=6.7 Score=34.57 Aligned_cols=54 Identities=19% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCCCCCcCccCcccccCceeC-CCc-----cHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STG-----QTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cg-----htfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
=+++.++|||+++...+-|.+ ..+ .-|+...+.+.... +..-|..|.+++...+
T Consensus 36 C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~-~~~HPLSREpit~sMI 95 (113)
T PF06416_consen 36 CPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE-GAPHPLSREPITPSMI 95 (113)
T ss_dssp S-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC-T---TTT-----TTTE
T ss_pred CCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc-CCCCCCccCCCChhhE
Confidence 356789999999999999987 333 24899999998887 4556888888876543
No 360
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.50 E-value=2.9e+02 Score=29.67 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccCccccccchhhHHHHHHHHHHhHHhHHHHHhcCC-CCChhHH-
Q 038217 11 RRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSGT-CIESTAV- 88 (715)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~kk~~~~l~r~i~ll~~lleel~~~~~-~~~~~~~- 88 (715)
.+||...+|-..+.++++....+..+. +.-+. .-.+.-.|+.|-++|.=-..+|+++...-. .-||-..
T Consensus 38 ~kr~~~~~~~~~~~~~~sl~~~~~A~~--------~~~P~-Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~E 108 (325)
T PF08317_consen 38 TKRRSTTAPDSSDEEPPSLEDYVVAGY--------CTVPM-LELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFRE 108 (325)
T ss_pred cCCcccCCCCcCCCCCCCHHHHHHHhc--------cCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 456655555544555555444443211 11122 247789999999999999999999964322 2233111
Q ss_pred --HhHHHHHHHHHHHHHHHHh-cc-ccchhHHHHhhhHH
Q 038217 89 --LCFKELYLLLYRCKILLDY-CG-QSSKLWLLLQNHSI 123 (715)
Q Consensus 89 --~~l~~L~~al~~ak~Ll~~-C~-~~Sklyll~~~~~i 123 (715)
.+=.+....|..=-.++.. |+ .+-+.|.-+..+.+
T Consensus 109 Y~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll 147 (325)
T PF08317_consen 109 YYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLL 147 (325)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112444455444445544 44 44455887775554
No 361
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=52.49 E-value=3e+02 Score=31.14 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhh--C------ChhHHHHHHHHHHHHhCCc--chHHHHhhhC-Cc
Q 038217 531 PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL--G------HEGVAEEAAGALALIVRQP--IGAAAVGEEE-MA 599 (715)
Q Consensus 531 ~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL--~------~~~~~~~al~~L~~La~~~--e~~~~i~~~g-~~ 599 (715)
.+..+.+-.++.||+..+-... ++..|..+| . +..+...|+.+|..+.-.. ++...+--.. ..
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred cccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 3666778888888887554332 356677777 2 3366778888888765433 3333332222 14
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
++.+...++.+++..--..+..+.++-
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 788888887766554433444444444
No 362
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.80 E-value=18 Score=32.10 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHH
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQE 450 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~ 450 (715)
.-..+..+..++. .|+....+++.|+++.|+.||.+.+.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456777777775 689999999999999999999998876643
No 363
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.39 E-value=2e+02 Score=32.54 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=94.7
Q ss_pred HcCChHHHHHhhc----cCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 038217 430 KAGAIPHLRNLLS----THNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 430 ~~G~i~~Lv~lL~----s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
+.|.+..++..|. +++..++..|+..|.|.+..-..|..=. ..-.+..++.-|..+.+.++.-.|..+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 4566655555442 3566788999999999987733332222 3445667777776665778888888888776543
Q ss_pred chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc--cHHHHHHh--CChHHHHHhhCCh-hHHHHHHHHH
Q 038217 506 HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD--NCVRMIEA--GAVTALVGALGHE-GVAEEAAGAL 580 (715)
Q Consensus 506 ~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~a--G~v~~Lv~lL~~~-~~~~~al~~L 580 (715)
-.++...---..+.-.+..+..+.+++.+-.|..+...|+.... -+..+.+. +...+++-.+.|+ .-...|++..
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~ 410 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE 410 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH
Confidence 22222110001234456666777888899888888888876443 33334431 2233444444544 3345566666
Q ss_pred HHHhCCcchHHHH
Q 038217 581 ALIVRQPIGAAAV 593 (715)
Q Consensus 581 ~~La~~~e~~~~i 593 (715)
...+.-.-++++.
T Consensus 411 ~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 411 LRTCYPNLVRKEL 423 (533)
T ss_pred HHhcCchhHHHHH
Confidence 5555544444443
No 364
>PF14353 CpXC: CpXC protein
Probab=50.98 E-value=8.4 Score=35.30 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~ 337 (715)
+.+||-|+..+.-.+-..-.-+....-.++-+.. -..+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3689999999887664322222334444444432 1358999998764
No 365
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=50.45 E-value=1.2e+02 Score=34.64 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=74.7
Q ss_pred CChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHH---hhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcC----
Q 038217 558 GAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAV---GEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSG---- 629 (715)
Q Consensus 558 G~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i---~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~---- 629 (715)
+.|+.+++.+..+.+.+--+.++. +..+++...+ +....+|+.|+.+|.. .+...+.+|+..|..+.+-+
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~ 98 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP 98 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 667777777776666666666655 3333444333 3334449999999974 57888999998877764422
Q ss_pred --------CHHHHHHHHhcCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHHHh
Q 038217 630 --------GASATERVLKAPALVGLLQALLF--TGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 630 --------~~~~~~~l~~~~g~i~~L~~Ll~--s~~~~~k~~A~~lL~~l~~~ 672 (715)
+......+.. ...+..|+..+- .++...--...-++.++|+.
T Consensus 99 ~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 99 QNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 2445667776 677888888776 44555566666788999775
No 366
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=49.98 E-value=4.3e+02 Score=29.92 Aligned_cols=258 Identities=14% Similarity=0.143 Sum_probs=123.9
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhh
Q 038217 391 TAELLIQQLA--NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 391 ~i~~Lv~~L~--s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.|+.+++.|- ..+.+.|..+..-+..+.+.. +.+..+... .+...+.. ..++--..-+.+|..|+.+-.+-.
T Consensus 28 ~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~-~~~~~~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~ 102 (464)
T PF11864_consen 28 EIWYAAKDLIDPNQPSEARRAALELLIACIKRQ-DSSSGLMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDID 102 (464)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc-ccccHHHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCch
Confidence 4666777664 335667777777666666553 221111111 12222222 233333344566666665554432
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc----Cch-hHHHHhcccC----cHHHHHHHhhcC----ChhHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA----VHE-YKKKIADESG----AVEALATLLRLG----TPRGK 534 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~----~~~-~~~~I~~~~g----~I~~Lv~LL~~~----~~~~~ 534 (715)
. . +.+..+.|...|... . .++..-+..+. .+. ....+....+ .+..++++++-. ++...
T Consensus 103 ~-~-~~~i~~~L~~wl~~~--~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i 174 (464)
T PF11864_consen 103 F-F-EYEIGPFLLSWLEPS--Y----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEI 174 (464)
T ss_pred h-c-ccchHHHHHHHHHHH--H----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 2 3 577788888777542 1 11111111111 111 0100000122 333333443321 22334
Q ss_pred HHHHHHHHHhhcCCcc------HHH----HHHhCChH-----HHHHhhC----ChhHHHHHHHHHHHHhCCcchHHHHhh
Q 038217 535 KDAVTALFNLSTHTDN------CVR----MIEAGAVT-----ALVGALG----HEGVAEEAAGALALIVRQPIGAAAVGE 595 (715)
Q Consensus 535 ~~A~~aL~nLs~~~~n------~~~----iv~aG~v~-----~Lv~lL~----~~~~~~~al~~L~~La~~~e~~~~i~~ 595 (715)
...+..++.+|....+ +-. ++..|.|| .++..|. -.+....+-.++.||+...-|...
T Consensus 175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~--- 251 (464)
T PF11864_consen 175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA--- 251 (464)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH---
Confidence 4444445555443321 222 22334433 3455553 236667788888888876555443
Q ss_pred hCCcHHHHHHHhhcC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC--cHHHHHHHhhcCCHHHH-HHHHHHH
Q 038217 596 EEMAVTGLVGMMRCG------TPRGKENAVAALLELCRSGGASATERVLKAPA--LVGLLQALLFTGTKRAR-RKAASLA 666 (715)
Q Consensus 596 ~g~~I~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~s~~~~~k-~~A~~lL 666 (715)
+..|..+|... +...-.-|+..|..+..+.+++....+-. .- +++.|..-++.+++++- +-...+.
T Consensus 252 ----i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~-~~~~vl~sl~~al~~~~~~v~~eIl~~i~ 326 (464)
T PF11864_consen 252 ----IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF-SPSSVLPSLLNALKSNSPRVDYEILLLIN 326 (464)
T ss_pred ----HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc-cHHHHHHHHHHHHhCCCCeehHHHHHHHH
Confidence 66777877432 23334567777777666654333333332 33 78888888887755543 3334455
Q ss_pred HHH
Q 038217 667 RVF 669 (715)
Q Consensus 667 ~~l 669 (715)
+++
T Consensus 327 ~ll 329 (464)
T PF11864_consen 327 RLL 329 (464)
T ss_pred HHH
Confidence 555
No 367
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.91 E-value=5.8e+02 Score=31.44 Aligned_cols=135 Identities=17% Similarity=0.128 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHh---hChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhh
Q 038217 390 ATAELLIQQLAN--------GSPRAKTVAAREIRLLAK---TGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLN 458 (715)
Q Consensus 390 ~~i~~Lv~~L~s--------~~~~~~~~A~~~L~~La~---~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~n 458 (715)
+.+++++..|.+ .+...+..|++.+..++. .+.-.+ -..+.=.++.+...++++---++-.|++++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 567777777761 134445566666666652 111111 22233345566677788777889999999999
Q ss_pred hhcCc-hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhc-ccCcHHHHHHHhhc
Q 038217 459 LSIYD-KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIAD-ESGAVEALATLLRL 528 (715)
Q Consensus 459 Ls~~~-~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~-~~g~I~~Lv~LL~~ 528 (715)
.+.-+ .+..... .+++.....|.+..+..++..|+-+|..+-.+.. ....+.. .++.++.|+.+.+.
T Consensus 489 ~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 98433 4333333 4677777777744477889889989988766554 3343432 14566677777765
No 368
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.62 E-value=3.1e+02 Score=32.85 Aligned_cols=31 Identities=16% Similarity=-0.029 Sum_probs=17.7
Q ss_pred cCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 516 SGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 516 ~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
+..+|..|+...+.+.++++..-..|..-+.
T Consensus 70 S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE 100 (968)
T KOG1060|consen 70 SLLFPAVVKNVASKNIEVKKLVYVYLLRYAE 100 (968)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 3456666666666666666655555444443
No 369
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.52 E-value=3.6e+02 Score=28.95 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=107.8
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhc-Cc-hhhhhhhhh-cCcHHHHHHHHhcC----CC--------HHHHHHHHHH
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSI-YD-KNKSRIMDE-EGCLGSIVKVLRFG----LT--------TEARENAAAT 498 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~-~nk~~I~~~-~g~i~~Lv~lL~~~----~~--------~e~~~~Aa~~ 498 (715)
+..+-+-|++....+...++..|..+.. +. .....+... .--.+.+.+++... .. ..+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999877 44 223444322 33445666666321 01 1778888877
Q ss_pred HHHhcc--CchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH-hhcCC----ccHHHHHHhCChHHHHHhhC--C
Q 038217 499 LFSLSA--VHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN-LSTHT----DNCVRMIEAGAVTALVGALG--H 569 (715)
Q Consensus 499 L~~Ls~--~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n-Ls~~~----~n~~~iv~aG~v~~Lv~lL~--~ 569 (715)
+..+-. +...+..+....+.+..+++-|..++++.....+.+|.. +..++ ..|..+....++..|+.+.. +
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 776644 444777777767889999999988888999999999985 43333 24555566677888888764 4
Q ss_pred h----hHHHHHHHHHHHHhCCc
Q 038217 570 E----GVAEEAAGALALIVRQP 587 (715)
Q Consensus 570 ~----~~~~~al~~L~~La~~~ 587 (715)
+ .+.+.+-..|..+|.++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 4 77888888999888654
No 370
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.32 E-value=3e+02 Score=27.95 Aligned_cols=138 Identities=18% Similarity=0.088 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHH
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRM 554 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 554 (715)
++.++.-+..+.+.+.......+|..++.++ .+.. -++..|..+...+.....--+...+..+-.... +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~------~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP------PVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence 3455554555558889999999999999887 3333 344566677666555554455555555544332 221
Q ss_pred HHhCChHHHHHhh--------CC--h--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHh-hcCChHHHHHHHHH
Q 038217 555 IEAGAVTALVGAL--------GH--E--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM-RCGTPRGKENAVAA 621 (715)
Q Consensus 555 v~aG~v~~Lv~lL--------~~--~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL-~~~s~~~ke~A~~~ 621 (715)
+.+..++..+ .+ . +........++.+|..... .... +++.+..++ ...++..+..|+.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~-ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVD-LLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHH-HHHHHHHHHhccccHHHHHHHHHH
Confidence 3344444441 11 1 3333334566666664333 1112 377778888 77889999999999
Q ss_pred HHHHHhcC
Q 038217 622 LLELCRSG 629 (715)
Q Consensus 622 L~~L~~~~ 629 (715)
|..||...
T Consensus 146 l~~Lc~~~ 153 (234)
T PF12530_consen 146 LAPLCEAE 153 (234)
T ss_pred HHHHHHHh
Confidence 99999553
No 371
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=48.41 E-value=3.7e+02 Score=28.71 Aligned_cols=217 Identities=15% Similarity=0.116 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHH-Hhhcc-C-CHHHHHHHHHHHhhhhcCch
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLR-NLLST-H-NPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv-~lL~s-~-d~~~~~~A~~aL~nLs~~~~ 464 (715)
.+....|+..|...+.+.+..++....++.+.....|...++- ..=|.++ .|++. . .+++.-++-..|.....++.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHH
Confidence 3567888899999999999998888888777666666555542 2222222 23332 2 25555555555555566665
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhc-ccC-c-HHHHHHHhhcCChhHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIAD-ESG-A-VEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~-~~g-~-I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
-.+.|. ...-+.......+.+ .-++...|.++...|-..+. ....+.. ... . .+.--.|+++++.-++..+..+
T Consensus 158 LakiiL-~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 158 LAKIIL-ESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHH-cchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 556666 677778888888877 77777788888877654332 2222221 111 2 2335677888888889999999
Q ss_pred HHHhhcCCccHHHHHHh----CChHHHHHhhCCh--hHHHHHHHHHHHHhCCc---chHHHHhhhCCcHHHHHHHhhc
Q 038217 541 LFNLSTHTDNCVRMIEA----GAVTALVGALGHE--GVAEEAAGALALIVRQP---IGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a----G~v~~Lv~lL~~~--~~~~~al~~L~~La~~~---e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
|..+-.+..|-..|.+. .....++.+|+|+ .++-.|-.+......++ +-...|+-.+- +.|++++..
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l~~ 311 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELLHD 311 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHHHH
Confidence 99999998888777654 5678888889754 88999999998886653 33344444454 667766654
No 372
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=48.09 E-value=50 Score=36.85 Aligned_cols=94 Identities=19% Similarity=0.160 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhCC-----cchHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCc
Q 038217 570 EGVAEEAAGALALIVRQ-----PIGAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPAL 643 (715)
Q Consensus 570 ~~~~~~al~~L~~La~~-----~e~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~ 643 (715)
..+..+++.+|.|+... +-+-.++.+ +. +..+.. ..-.+.-++|=+|+.++.||-++..-..+ .+--...+
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~-~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq-~~~wA~~~ 574 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ES-IQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ-TAPWASQA 574 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HH-HHhcccceecccccccchHHHHHHHHhhcCcccccc-CCCchHHH
Confidence 36778888888887532 112222222 22 222222 33336778899999999999988521111 11121236
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHH
Q 038217 644 VGLLQALLFTG-TKRARRKAASLA 666 (715)
Q Consensus 644 i~~L~~Ll~s~-~~~~k~~A~~lL 666 (715)
.+.|..|+.+. +-+++..|++.|
T Consensus 575 F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 575 FNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred HHHHHHHHHHhccceEeehhhhhh
Confidence 77787777665 556666665544
No 373
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=48.02 E-value=5.8 Score=37.37 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=17.8
Q ss_pred CCCcCccCcccccCceeCCCc
Q 038217 290 KDFCCPIMLDLMRDPVIISTG 310 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cg 310 (715)
++.+||||++...+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467999999999999988553
No 374
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.71 E-value=4.3e+02 Score=32.53 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=75.3
Q ss_pred CChHHHHHhhcc--------CCHHHHHHHHHHHhhhhcC----chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 038217 432 GAIPHLRNLLST--------HNPVAQENSVTAMLNLSIY----DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATL 499 (715)
Q Consensus 432 G~i~~Lv~lL~s--------~d~~~~~~A~~aL~nLs~~----~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 499 (715)
|.++.++..|.+ .++.-.+.|+.++.+|+.- +..+. .+ +.=.+..+.-.+++. ..-.|..|++++
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~m-E~flv~hVfP~f~s~-~g~Lrarac~vl 486 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QM-EYFLVNHVFPEFQSP-YGYLRARACWVL 486 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HH-HHHHHHHhhHhhcCc-hhHHHHHHHHHH
Confidence 677788887762 3567788889998888621 11122 22 333455555566775 778899999999
Q ss_pred HHhccCch-hHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCcc
Q 038217 500 FSLSAVHE-YKKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 500 ~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n 550 (715)
...+..+- +.... ..++....+.|.+ ..-.++..|+-||..+-++.+.
T Consensus 487 ~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 99985432 22222 3466677777774 4468889999999988776553
No 375
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=47.43 E-value=1.2e+02 Score=36.65 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=95.1
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc-cH
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NC 551 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~-n~ 551 (715)
...+|.|++..... +...+.+=..+|.+.-.+-.....+-+.+...|.|++-|.-.+...+-.++.+|.-+....+ -.
T Consensus 866 ~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 56788888888754 66667666666666554333333333334677777777777777787788887766654322 22
Q ss_pred HHHHHhCChHHHHHhhC--C---hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG--H---EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~--~---~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
..-+. -.||.++.+=+ | ..+++.|+..|..|.+ .|...-.-.+... +..|...|.+....+|+.|+.+
T Consensus 945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~V-l~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLV-LRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHH-HHHhhhccCcHHHHHHHHHHHH
Confidence 22111 24555555543 2 2578889999999988 6776666667677 8889998987777778888764
No 376
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.94 E-value=16 Score=42.68 Aligned_cols=48 Identities=8% Similarity=-0.023 Sum_probs=35.6
Q ss_pred CCCCCCCcCccCcccccCce----eC---CCccHhhHHHHHHHHHh-----CCCCCCCCc
Q 038217 286 LSIPKDFCCPIMLDLMRDPV----II---STGQTYDRRSIARWMEE-----GHRTCPKTG 333 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv----~~---~cghtfcr~cI~~w~~~-----~~~~CP~c~ 333 (715)
...++.-.|++|-.-+.+|+ +. .|+|.+|..||..|... -+..|++|.
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 45566789999998888865 22 38999999999999885 233456664
No 377
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=46.79 E-value=1.1e+02 Score=36.08 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=81.5
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhcCCccHH
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLSTHTDNCV 552 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~~~~n~~ 552 (715)
.+++.|..-++.. +...++.++..+-..+..=+ ...+. .-.+|.|-++. +..+...+.+++.++..|. +
T Consensus 389 ~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk-~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q 458 (700)
T KOG2137|consen 389 KILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVK-QAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------Q 458 (700)
T ss_pred HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHH-HHHHHHhhcchhcccchHHHHHHHHHHHHHH------H
Confidence 3445555555554 66777878777777665433 11222 34566666663 3345678888888888877 3
Q ss_pred HHHHhCChHHHHHhhC-----ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHH
Q 038217 553 RMIEAGAVTALVGALG-----HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKEN 617 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~ 617 (715)
.+-.+.+++.+..++. |+.++...+.+..++.. +..| .++..+.. +|.++.+...++-...+.
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~V-lPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENV-LPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhh-hhhhhhhhhcccccHHHH
Confidence 3444455555555552 77888999999988866 4455 55555666 788887776655433333
No 378
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.79 E-value=5.2e+02 Score=29.97 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=67.2
Q ss_pred cchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhh----HHHHHHHH
Q 038217 54 FQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNH----SISGHFHD 129 (715)
Q Consensus 54 ~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~----~i~~~f~~ 129 (715)
-.+++-++..+++.+|.-=++||...++. +.-...|.+-+.-|..+..|.+.|.+. |-++.++ ++......
T Consensus 175 ~~~~~~~e~~~~~d~L~fq~~Ele~~~l~--~gE~e~L~~e~~rLsn~ekl~~~~~~a---~~~L~ge~~~~~~~~~l~~ 249 (557)
T COG0497 175 DLQEKERERAQRADLLQFQLEELEELNLQ--PGEDEELEEERKRLSNSEKLAEAIQNA---LELLSGEDDTVSALSLLGR 249 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhhHHHHHHHHHHH---HHHHhCCCCchhHHHHHHH
Confidence 44667788999999999999999977752 335677888888888888888887544 4555433 35555554
Q ss_pred HHHHHHHHhccC-CCCc-ccchHHHHHHHHHHHHHHHhhhccCCc
Q 038217 130 LNQEISTLLDVF-PADD-IELSEDVREQIDLMQRQARNAKLHIDK 172 (715)
Q Consensus 130 ~~~~l~~~L~~l-p~~~-l~~s~ev~e~v~~~~~q~~~~~~~~d~ 172 (715)
....+...=+.= .|.. ...=++...+++.+..++++....++.
T Consensus 250 a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~ 294 (557)
T COG0497 250 ALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEF 294 (557)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444443211100 0000 011123444555566666655544433
No 379
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.34 E-value=11 Score=45.92 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=36.6
Q ss_pred CcCccCcccc-----cCceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLM-----RDPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm-----~dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.|.||++-. -+|.+. .||--.||.|++-=.++|+..||.|+.+..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4799999863 356554 688889999997667789999999998775
No 380
>PLN02400 cellulose synthase
Probab=45.65 E-value=9 Score=46.92 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=36.2
Q ss_pred CcCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.|.||++-.- +|.+. .||--.||.|++-=.++|+..||.|+.+..
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 38999998632 45544 688889999997666779999999998775
No 381
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=44.84 E-value=88 Score=26.93 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=52.2
Q ss_pred HHHHhhCCh--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 562 ALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 562 ~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
..+..+.|+ .++.+++..|..|..... ..+......+..+...|++.++-+--+|+..|..|+...++.+...+.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 344555544 889999999999977555 333333332666677888888899999999999999877554444433
No 382
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=44.33 E-value=13 Score=32.73 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=16.4
Q ss_pred CceeC---CCccHhhHHHHHHHHHh
Q 038217 303 DPVII---STGQTYDRRSIARWMEE 324 (715)
Q Consensus 303 dPv~~---~cghtfcr~cI~~w~~~ 324 (715)
.||.+ .|+ |.||.|+++|-.-
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I 87 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI 87 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC
Confidence 67765 566 5799999999764
No 383
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.02 E-value=2.8e+02 Score=35.71 Aligned_cols=137 Identities=10% Similarity=0.108 Sum_probs=83.1
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hccCchhHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS-LSAVHEYKK 510 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~~ 510 (715)
+.+..++.+|..+...++-.|+.+|.++..-+.. .+. ...+-..+-.-+... +..+|+.|+..+.. ...+++.-.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~-~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLS-RPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhc-CHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhccHHHHH
Confidence 4567778888888889999999999998665532 111 222233333333343 77889999888863 333433333
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhh---CC-hh-HHHHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL---GH-EG-VAEEAAGALALI 583 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL---~~-~~-~~~~al~~L~~L 583 (715)
++.+ .+..-+.+....++|.+++.|+.+|....+-..+++. .+++| .| ++ +++.+..++.++
T Consensus 892 qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~-----cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 892 QYYD------QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM-----CAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH-----HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3322 3333334445788999999999999866654444332 33343 22 23 666666666666
No 384
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.99 E-value=8.6e+02 Score=31.70 Aligned_cols=271 Identities=15% Similarity=0.082 Sum_probs=140.5
Q ss_pred HhhHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc
Q 038217 386 EANRATAELLIQQLA----NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 386 ~~~~~~i~~Lv~~L~----s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~ 461 (715)
+..+..+..||.+|- ..+..+ ..|...|.+..-.++.+-..-.-..+..-|+.-|.+.-..+++.++.||..|-.
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP~~~V-q~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDPDKKV-QDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCCcHHH-HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 345566777777773 344444 456666666554332222111223556667777778889999999999999977
Q ss_pred Cchh---hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHH---HHHHHhcc---Cch----hHHHHhcccCcHHHHHH--Hh
Q 038217 462 YDKN---KSRIMDEEGCLGSIVKVLRFGLTTEARENAA---ATLFSLSA---VHE----YKKKIADESGAVEALAT--LL 526 (715)
Q Consensus 462 ~~~n---k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa---~~L~~Ls~---~~~----~~~~I~~~~g~I~~Lv~--LL 526 (715)
..++ ++.+ ......+.+++..= .+.+|+.|- .+|..|.. +.. .+..+ ..++|.|++ ++
T Consensus 1069 g~~~~~~~e~l---pelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l---~~iLPfLl~~gim 1141 (1702)
T KOG0915|consen 1069 GRPFDQVKEKL---PELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL---DIILPFLLDEGIM 1141 (1702)
T ss_pred CCChHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH---HHHHHHHhccCcc
Confidence 6544 2222 23445555555432 334555444 44444422 111 22222 235555553 23
Q ss_pred hcCChhHHHHHHHHHHHhhcCCcc--HHHHHHhCChHHHHHhhC--Ch-----------hHHHHHHHHHH-HHhCCcchH
Q 038217 527 RLGTPRGKKDAVTALFNLSTHTDN--CVRMIEAGAVTALVGALG--HE-----------GVAEEAAGALA-LIVRQPIGA 590 (715)
Q Consensus 527 ~~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~aG~v~~Lv~lL~--~~-----------~~~~~al~~L~-~La~~~e~~ 590 (715)
+.-+++++.++.+|..|+.+... +..+ ...||.|+...+ ++ ....+++..++ +.+.....-
T Consensus 1142 -s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmm 1218 (1702)
T KOG0915|consen 1142 -SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMM 1218 (1702)
T ss_pred -cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHH
Confidence 34478899999999999865442 3222 234666666664 22 22233444333 233332222
Q ss_pred HHH---hh------hCCcHHHHHHHhhcC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC-cHHHHHHHhhcCCHHHH
Q 038217 591 AAV---GE------EEMAVTGLVGMMRCG-TPRGKENAVAALLELCRSGGASATERVLKAPA-LVGLLQALLFTGTKRAR 659 (715)
Q Consensus 591 ~~i---~~------~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g-~i~~L~~Ll~s~~~~~k 659 (715)
+.| ++ .+-++|.+.++++.+ .-..|--|+..+..|...-+.+.. --.| .+..|+....+.++.++
T Consensus 1219 eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt----P~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1219 ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT----PYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC----cchhHHHHHHhhccccccHHHH
Confidence 221 11 122367788888863 334455555555555544322111 0011 34445555566677777
Q ss_pred HHHHHHHHHHHH
Q 038217 660 RKAASLARVFQR 671 (715)
Q Consensus 660 ~~A~~lL~~l~~ 671 (715)
+.-+..+-.|-+
T Consensus 1295 kafAsAmG~L~k 1306 (1702)
T KOG0915|consen 1295 KAFASAMGYLAK 1306 (1702)
T ss_pred HHHHHHHHHHHh
Confidence 666654444443
No 385
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=17 Score=37.30 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=44.4
Q ss_pred CCCCCcCccCcccccCceeCCC----ccHhhHHHHHHHHHh----CCCCCCCCcc-ccccCCCCccHHHHHHHHHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIIST----GQTYDRRSIARWMEE----GHRTCPKTGQ-MLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~c----ghtfcr~cI~~w~~~----~~~~CP~c~~-~l~~~~l~pn~~l~~~i~~~~ 355 (715)
....++|.+|.+-+.|.-.+.| .|.||-.|-.+.++. |.-.||--.+ +|.- .-+|=--|+..|....
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvg-S~vPWAFMQGEIatIL 340 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVG-SNVPWAFMQGEIATIL 340 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccC-CcccHHHhhhhHHHHh
Confidence 4455999999999999988855 699999998888875 3446765221 2222 2344445666555543
No 386
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.91 E-value=1.3e+02 Score=26.68 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHh---hcC---CHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALL---FTG---TKRARRKAASLARVF 669 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~s~---~~~~k~~A~~lL~~l 669 (715)
+..|.+-|.+.++..+-.|+.+|-.+..++|+.....+.. ..++..++.+. ..| +..+|+++..++...
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS-NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4566666677899999999999999999998888877776 44555554421 122 668889988887664
No 387
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=43.86 E-value=16 Score=24.91 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=7.6
Q ss_pred CCCCCCCccc
Q 038217 326 HRTCPKTGQM 335 (715)
Q Consensus 326 ~~~CP~c~~~ 335 (715)
...||.|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 6689999764
No 388
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.82 E-value=3.7e+02 Score=31.17 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=64.5
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..++ .|.+..++.-+.+. +..+|..++.+|.-++..-..-..... .|.+..|..-+.+..+.++..|+.+|+.+-.
T Consensus 86 ~~~V--~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 86 EELV--AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hHHH--HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 6666 68888888888887 899999999999988764332222222 4777777777766677888899999887755
Q ss_pred CCccHHHHHHhCChHHHHHhhC
Q 038217 547 HTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
...|-...+ +..|+.+++
T Consensus 162 ~~~neen~~----~n~l~~~vq 179 (885)
T COG5218 162 MELNEENRI----VNLLKDIVQ 179 (885)
T ss_pred ccCChHHHH----HHHHHHHHh
Confidence 444433322 225566665
No 389
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.46 E-value=22 Score=40.00 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=30.3
Q ss_pred CCCCcCccCcccccC-ceeCCCccHhhHHHHHHHHHh
Q 038217 289 PKDFCCPIMLDLMRD-PVIISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d-Pv~~~cghtfcr~cI~~w~~~ 324 (715)
.....|.||.+-..+ .+.+.|||-||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456899999988875 555699999999999999875
No 390
>PF06497 DUF1098: Protein of unknown function (DUF1098); InterPro: IPR009477 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf102; it is a family of uncharacterised viral proteins.
Probab=43.26 E-value=1.3e+02 Score=26.12 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=38.6
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhh-ccCccccccchhh-HHHHHHHHHHhHHhHHHHHhcCC
Q 038217 22 LAPVDLTDVALVQTLLSISSELVS-CFSDRCFFFQRRN-SRSLIRKMEAFLVLLEYLRDSGT 81 (715)
Q Consensus 22 ~~~~~~~~~~l~~~l~~~~~~i~~-~~~~~~~~~~kk~-~~~l~r~i~ll~~lleel~~~~~ 81 (715)
-++..+.+.+|+++|... +.++. .-.+. ..+|++ +..|..+-..+..+++.|.+...
T Consensus 13 ~~~~~~~~~~lL~~Ln~~-~tva~~IlnD~--S~~K~~sl~~Ls~~S~~aK~il~~Ie~~~~ 71 (95)
T PF06497_consen 13 QSPDDINAEDLLQSLNEN-QTVARLILNDT--SENKRNSLKRLSPQSAGAKKILESIEDDDD 71 (95)
T ss_pred cCCCCCCHHHHHHHHHhc-ccHHHHHHcCC--CHhHHHHHHHHhHhhHHHHHHHHHHhcCCc
Confidence 344567999999999884 33322 22333 345555 57888888888999999987443
No 391
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=42.72 E-value=93 Score=37.61 Aligned_cols=144 Identities=18% Similarity=0.131 Sum_probs=93.1
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh-hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM-DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YK 509 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~ 509 (715)
..+|.|++...+.+...+.+=+.+|.+.-.+-. +..+. .-...+|.|++-|.-. +.++|-.+..++.-+....+ ..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccccc
Confidence 578888888776565666666777777655333 23332 1356778888888777 88888888888876644322 11
Q ss_pred HHHhcccCcHHHHHHHhhcCC---hhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhCCh--hHHHHHHHH
Q 038217 510 KKIADESGAVEALATLLRLGT---PRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGA 579 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~---~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~ 579 (715)
..-. .-.||.++.+=.+.+ .-++..|+.+|..|.. -+.+.-.-.+-.++..|...|.|+ -+++.|+.+
T Consensus 945 t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1111 346777777754433 5678999999999987 555444444445677788888876 456666654
No 392
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=42.05 E-value=2.5e+02 Score=33.21 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=85.6
Q ss_pred HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH
Q 038217 430 KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK 509 (715)
Q Consensus 430 ~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 509 (715)
...++|.|..-+++.+..+|+.++..+-..+..-+ ...+ ..-.+|.|-.+-....+..++.+++.++..+... -.+
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~v-k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD~ 462 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFV-KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LDK 462 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHH-HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HHH
Confidence 44667788888888999999999999999876555 3344 4445566655533333778889999999888821 122
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
..+. .-+.++.+-.+..++..+-..+.+..++....-+...++...++|.++.+..
T Consensus 463 ~~v~---d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 463 AAVL---DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred HHhH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 2232 2355555555556677766666666677655444344455567777777764
No 393
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=41.95 E-value=2.5e+02 Score=30.74 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=102.1
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchh---hhhhhhhcCcHHHHHHHHhc--------C--CCHHHHHHHHHHHHHhccCchh
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKN---KSRIMDEEGCLGSIVKVLRF--------G--LTTEARENAAATLFSLSAVHEY 508 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~n---k~~I~~~~g~i~~Lv~lL~~--------~--~~~e~~~~Aa~~L~~Ls~~~~~ 508 (715)
.+.+..-+..|...|.+.-...++ ...+ ..-++.+++.++. + .+.++...|+.+|..+-.+.+.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l---~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQAL---QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH
Confidence 445666777778788776443333 2223 3445566665532 1 2567778899999888887776
Q ss_pred HHHHhcccC--cHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-------ChhHHHHHHHH
Q 038217 509 KKKIADESG--AVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-------HEGVAEEAAGA 579 (715)
Q Consensus 509 ~~~I~~~~g--~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-------~~~~~~~al~~ 579 (715)
-..+-.+.+ .+...+..+.+++. -|.-+...|+-|+.. ....+++....+..++..+. ...+..+.+.+
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~-~K~i~~~~l~~ls~Q-~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNS-PKSICTHYLWCLSDQ-KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC-CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 666654222 34555566644331 222233334444432 12222334444555555542 34788889999
Q ss_pred HHHHhCCcchHHHHhhhCC-cHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 580 LALIVRQPIGAAAVGEEEM-AVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 580 L~~La~~~e~~~~i~~~g~-~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
+.+|.. .....+.++-. +++.++..+-+.....+..|..++..+.
T Consensus 158 ~~~ll~--q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLS--QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 999864 33344444433 7888888666666677777776665554
No 394
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.18 E-value=13 Score=41.32 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=47.6
Q ss_pred CCCCCCCcCccC-cccccCceeC--CCccHhhHHHHHHHHHhCCCCCCCCccc-cccCCCCccHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIM-LDLMRDPVII--STGQTYDRRSIARWMEEGHRTCPKTGQM-LVHDRLVPNRALRNLIVQW 354 (715)
Q Consensus 286 ~~~~~~~~CpIc-~~lm~dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~-l~~~~l~pn~~l~~~i~~~ 354 (715)
...++++.|++| .+.|.+-..+ .|+.+||..||.+.+.. ..||.|... .....+.++..++..+..-
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRI 284 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHH
Confidence 468899999999 8899998877 78999999999988765 234444432 2333466666666555433
No 395
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.13 E-value=4.3e+02 Score=27.45 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh----ChhhHHHHHH------c-CChHHHHHhhcc--CCHHHHHHHHHHHhh
Q 038217 392 AELLIQQLANGSPRAKTVAAREIRLLAKT----GKENRAFIAK------A-GAIPHLRNLLST--HNPVAQENSVTAMLN 458 (715)
Q Consensus 392 i~~Lv~~L~s~~~~~~~~A~~~L~~La~~----~~~~r~~i~~------~-G~i~~Lv~lL~s--~d~~~~~~A~~aL~n 458 (715)
.+.-+..|.+..+.+-..|+.-|..+... +++.+..+.+ . |..+-+..++-- ..+.+.+.++..|..
T Consensus 9 FW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~ 88 (262)
T PF14225_consen 9 FWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSR 88 (262)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHH
Confidence 34556677777777777777776666433 2344444432 2 455555554422 245566677777777
Q ss_pred hhcCchh--------hhhhhhhcCcHHHHHHHHhcCCC----HHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh
Q 038217 459 LSIYDKN--------KSRIMDEEGCLGSIVKVLRFGLT----TEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526 (715)
Q Consensus 459 Ls~~~~n--------k~~I~~~~g~i~~Lv~lL~~~~~----~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL 526 (715)
|....++ +-.+. --+.+|.++.-+..+ + ......+|..|..++.... .+.+..+....
T Consensus 89 L~~~~~~~lig~~~~rll~~-~la~LP~ll~~~d~~-~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~y 158 (262)
T PF14225_consen 89 LTPLPDDPLIGDSQSRLLFL-LLALLPRLLHAFDDP-NPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSY 158 (262)
T ss_pred HhcCCCccccCCCCccHHHH-HHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHH
Confidence 7655432 22222 234556666666665 3 1344556677777663211 12222333332
Q ss_pred hcC----ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcH
Q 038217 527 RLG----TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAV 600 (715)
Q Consensus 527 ~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I 600 (715)
..+ ..+....++..|+.-.. ++. +...+..|+.+|.+ +.++...+.+|..+-..-+.+.. ....- +
T Consensus 159 a~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dl-i 230 (262)
T PF14225_consen 159 AKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADL-I 230 (262)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHH-H
Confidence 222 23455556666554332 111 22345567778753 46777788888777665444444 33344 7
Q ss_pred HHHHHHhhcCC
Q 038217 601 TGLVGMMRCGT 611 (715)
Q Consensus 601 ~~Lv~lL~~~s 611 (715)
.+|.+++++.-
T Consensus 231 spllrlL~t~~ 241 (262)
T PF14225_consen 231 SPLLRLLQTDL 241 (262)
T ss_pred HHHHHHhCCcc
Confidence 88888887643
No 396
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=40.59 E-value=29 Score=33.92 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC-CccHHHHHHHHHHHHhcC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL-VPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l-~pn~~l~~~i~~~~~~~~ 359 (715)
-+..|.||-|..-+. |.- .+. ..+.||.|+.++...+- .--..++..|...-..-+
T Consensus 114 ~~~~Y~Cp~C~~ryt----------f~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 114 NNMFFFCPNCHIRFT----------FDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCCEEECCCCCcEEe----------HHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 346899998874432 322 122 37999999998865421 112345666666554433
No 397
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=39.46 E-value=24 Score=41.83 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=36.2
Q ss_pred CCCCcCccCccccc--CceeC--CCccHhhHHHHHHHHHh------CCCCCCCCcc
Q 038217 289 PKDFCCPIMLDLMR--DPVII--STGQTYDRRSIARWMEE------GHRTCPKTGQ 334 (715)
Q Consensus 289 ~~~~~CpIc~~lm~--dPv~~--~cghtfcr~cI~~w~~~------~~~~CP~c~~ 334 (715)
.+.+.|-||.+.+. +||-. +|-|.|...||.+|-.. ....||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 34678999999885 55533 67899999999999875 2467999983
No 398
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.01 E-value=3e+02 Score=26.97 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhChhhHH------HHH------HcCChHHHH-HhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-
Q 038217 406 AKTVAAREIRLLAKTGKENRA------FIA------KAGAIPHLR-NLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD- 471 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~------~i~------~~G~i~~Lv-~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~- 471 (715)
+|..|+..|..+++.. +-|. .+. ..+.-+.|+ .++.++++.++..|+.+|..|-.....--..+.
T Consensus 2 vR~~Al~~L~al~k~~-~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKST-DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhc-CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4567777777777651 1111 111 122444554 466778999999999999887654432111110
Q ss_pred ------------------hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH-HhcccCcHHHHHHHhhcCChh
Q 038217 472 ------------------EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK-IADESGAVEALATLLRLGTPR 532 (715)
Q Consensus 472 ------------------~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~-I~~~~g~I~~Lv~LL~~~~~~ 532 (715)
-...-..|+..|+.+.+.........+|..|..+-.|... .+--...+..+..++.+.+++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0123344555666655666777777788777766554332 111122333444455566777
Q ss_pred HHHHHHHHHHHhhcCC
Q 038217 533 GKKDAVTALFNLSTHT 548 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~ 548 (715)
.+..++.++..|....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7788877777776543
No 399
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=38.68 E-value=22 Score=33.95 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
-+..|.||-|..-+. |.- .+.. .++||.|+.++...
T Consensus 106 ~~~~Y~Cp~c~~r~t----------f~e-----A~~~-~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 106 NNMFFICPNMCVRFT----------FNE-----AMEL-NFTCPRCGAMLDYL 141 (158)
T ss_pred CCCeEECCCCCcEee----------HHH-----HHHc-CCcCCCCCCEeeec
Confidence 356899998874332 221 2222 79999999987553
No 400
>PRK12495 hypothetical protein; Provisional
Probab=38.37 E-value=25 Score=35.05 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHhhHHHHHhhhh
Q 038217 216 RAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSR 251 (715)
Q Consensus 216 ~~E~~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~~ 251 (715)
..|.+.|++..+. ++.+....++|..||.+..
T Consensus 7 EaEREkLREKye~----d~~~R~~~~~ma~lL~~ga 38 (226)
T PRK12495 7 EAEREKLREKYEQ----DEQKREATERMSELLLQGA 38 (226)
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHhhc
Confidence 4566666664422 2223445566766665443
No 401
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=1e+03 Score=31.03 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=108.9
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 391 TAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 391 ~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.|-.++..-+ +..|..+..|+.-+..+++.. +..+.- --.||.|.+.=.++|..+|. |.+-++|--.-+ .+-
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKV 1032 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHH
Confidence 3333433333 346777888888888877543 222221 14577777776677887775 677777755433 321
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHH---HHHHHHH
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKK---DAVTALF 542 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~---~A~~aL~ 542 (715)
.... ...+.-|+.-|.+. ...+|+.++-+|..|-...+.-...-.-+..-..+++.+.+-.+.+++ .++.+|.
T Consensus 1033 vd~y~--neIl~eLL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1033 VDEYL--NEILDELLVNLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHH--HHHHHHHHHhccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 33444555555554 678999999999999876664444333234555555555432233333 4566677
Q ss_pred HhhcC---Cc--cHHHHHHhCChHHHHHh--hC-ChhHHHHHHHHHHHHhCCcch
Q 038217 543 NLSTH---TD--NCVRMIEAGAVTALVGA--LG-HEGVAEEAAGALALIVRQPIG 589 (715)
Q Consensus 543 nLs~~---~~--n~~~iv~aG~v~~Lv~l--L~-~~~~~~~al~~L~~La~~~e~ 589 (715)
.||.. .. .+.+-+-+.++|.|+.- ++ -++++.-+++.+..|+.+..+
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 66531 11 23332333345554432 22 248888899999999875443
No 402
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.03 E-value=2.1e+02 Score=25.30 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhc------cCCHHHHHHHHHHHhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLS------THNPVAQENSVTAMLNL 459 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~------s~d~~~~~~A~~aL~nL 459 (715)
..+..|..+|.+.++.++..|+..|..+.+.. +.....+....++..++++.. ..+..+++.+...+...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 46788889999999999999999999999875 355556666666666665421 13577888777766544
No 403
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.92 E-value=4.8e+02 Score=27.07 Aligned_cols=216 Identities=12% Similarity=0.112 Sum_probs=115.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFG-LTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
..|-..|.++|..++..|+..|...... +.+. . ...-+..|+.++.+. .+......++..+..|..........
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---L-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---c-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh
Confidence 3455678889999999999999876432 3221 2 233456666655431 25566666677777776443321111
Q ss_pred hcccCcHHHHHHHhh--cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCc
Q 038217 513 ADESGAVEALATLLR--LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQP 587 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~ 587 (715)
+ ...+..+.+-.. .-....+..+...|..|..+...-..-...+.+..+++++. ||.-...+..++..+...-
T Consensus 78 ~--~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 A--VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred H--HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 1 122333333221 11245677777788777654322112123355777788874 7877777777777765432
Q ss_pred chHHHHhhhCCcHHHHHHHhhc----------CCh--HHHHHHHHHH-HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC
Q 038217 588 IGAAAVGEEEMAVTGLVGMMRC----------GTP--RGKENAVAAL-LELCRSGGASATERVLKAPALVGLLQALLFTG 654 (715)
Q Consensus 588 e~~~~i~~~g~~I~~Lv~lL~~----------~s~--~~ke~A~~~L-~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~ 654 (715)
+ . ... ...+-+.+.. +++ -.++.=...| ..|++. +. +. .-.+|.|++=+.++
T Consensus 156 ~-----~-~~~-~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~--~~----fa--~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 156 D-----I-SEF-AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST--PL----FA--PFAFPLLLEKLDST 220 (262)
T ss_pred c-----c-chh-HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc--Hh----hH--HHHHHHHHHHHcCC
Confidence 2 1 111 3333333332 222 1222222333 333332 22 22 23488899999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 038217 655 TKRARRKAASLARVFQR 671 (715)
Q Consensus 655 ~~~~k~~A~~lL~~l~~ 671 (715)
++.+|.-+...|...-.
T Consensus 221 ~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACIE 237 (262)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99988776665555443
No 404
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.84 E-value=20 Score=30.27 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=12.0
Q ss_pred HhhHHHHHHHHHh
Q 038217 312 TYDRRSIARWMEE 324 (715)
Q Consensus 312 tfcr~cI~~w~~~ 324 (715)
.|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999986
No 405
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=37.55 E-value=5.4e+02 Score=30.43 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=147.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 397 QQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 397 ~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
..|..-+.+++.+=...|..- .+..-+.++..-.+|.|+..+..++ .-...+..|+.+...-+... . ..+.+
T Consensus 261 eel~lks~~eK~~Ff~~L~~~---l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--y-q~~i~ 332 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDR---LDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--Y-QVRII 332 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--c-ccchh
Confidence 555556666666655544442 2334445666677788877776666 33445555665544332222 3 57899
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHH
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI 555 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 555 (715)
+.|+++++.. +..+|-. +|.++-. .+..-..+.+ ...+|.+..-+.+.++..++..+..+..|+..=.-+ -+
T Consensus 333 p~l~kLF~~~-Dr~iR~~---LL~~i~~~i~~Lt~~~~~-d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 333 PVLLKLFKSP-DRQIRLL---LLQYIEKYIDHLTKQILN-DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred hhHHHHhcCc-chHHHHH---HHHhHHHHhhhcCHHhhc-chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 9999999987 6666643 3333322 2224455666 788999999888888888888888877776421111 00
Q ss_pred HhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHH
Q 038217 556 EAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASA 633 (715)
Q Consensus 556 ~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~ 633 (715)
.-..+..+-.+-. ++.++.+..-+|..++.+- .+..+.+..+.....-+++.-...|..++.+|+..+..-+..
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~- 481 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS- 481 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh-
Confidence 1111112222221 3356666665555554321 223355554555566666666677888888888877665321
Q ss_pred HHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 634 TERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 634 ~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.+ . ..+++.|.-+..+....++..|-..++-+
T Consensus 482 --~v-a-~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 482 --EV-A-NKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred --hh-h-hhccccccccccCcccchhhHHHHHHHHH
Confidence 22 1 34678888888888888887776554444
No 406
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.07 E-value=4.8e+02 Score=30.55 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=71.8
Q ss_pred hHHHHHhhcc----CCHHHHHHHHHHHhhhhc----Cc------hhhhhhhhhcCcHHHHHHHHh----cCCCHHHHHHH
Q 038217 434 IPHLRNLLST----HNPVAQENSVTAMLNLSI----YD------KNKSRIMDEEGCLGSIVKVLR----FGLTTEARENA 495 (715)
Q Consensus 434 i~~Lv~lL~s----~d~~~~~~A~~aL~nLs~----~~------~nk~~I~~~~g~i~~Lv~lL~----~~~~~e~~~~A 495 (715)
+..+..|+++ .++.+...|+.++..|.. .. ..+...+ ....++.+...|. .+ +.+.+..+
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~~~~~~~~ 510 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI-IEKYVPYLEQELKEAVSRG-DEEEKIVY 510 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh-HHHHHHHHHHHHHHHhhcc-CHHHHHHH
Confidence 3444455543 356677777777766632 21 1112222 3456666666665 33 66777888
Q ss_pred HHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC---ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC----
Q 038217 496 AATLFSLSAVHEYKKKIADESGAVEALATLLRLG---TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---- 568 (715)
Q Consensus 496 a~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---- 568 (715)
+.+|.|+-. ...++.|..++... +...+..|+.+|..+......+ +.+.|+.++.
T Consensus 511 LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 511 LKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS
T ss_pred HHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCC
Confidence 888888743 45788888888765 3567788888887774433222 2345666663
Q ss_pred ChhHHHHHHHHHHH
Q 038217 569 HEGVAEEAAGALAL 582 (715)
Q Consensus 569 ~~~~~~~al~~L~~ 582 (715)
+.+++..|+.+|..
T Consensus 573 ~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 573 DPEVRIAAYLILMR 586 (618)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHh
Confidence 44677666655544
No 407
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.60 E-value=4.7e+02 Score=31.58 Aligned_cols=174 Identities=13% Similarity=0.182 Sum_probs=87.0
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHH-----HHHH---hcCCCHHHHHHHHHHHHHh
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSI-----VKVL---RFGLTTEARENAAATLFSL 502 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~L-----v~lL---~~~~~~e~~~~Aa~~L~~L 502 (715)
..+|.++++|.++...+..+|+.++-.+-.. +++...|. .++-+.+. ..+. +.+...|--...-++++.+
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if-~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii 576 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIF-GAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRII 576 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCcccccc-chhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 3689999999999999999999999766443 33344444 33333321 1222 2221322222223344455
Q ss_pred ccCchhHHHHhcccCcHHHHHHHhh----c-CChhHHHH---HHHHHHHh-hcCCccHHHHHHhCChHHHHHhhCCh--h
Q 038217 503 SAVHEYKKKIADESGAVEALATLLR----L-GTPRGKKD---AVTALFNL-STHTDNCVRMIEAGAVTALVGALGHE--G 571 (715)
Q Consensus 503 s~~~~~~~~I~~~~g~I~~Lv~LL~----~-~~~~~~~~---A~~aL~nL-s~~~~n~~~iv~aG~v~~Lv~lL~~~--~ 571 (715)
+..++.-...+ +-.+..|.+++. + .++..-.. +..++.+- |.....-..-.+...+|.+...|+++ +
T Consensus 577 ~i~~~~i~p~~--~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E 654 (960)
T KOG1992|consen 577 SILQSAIIPHA--PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE 654 (960)
T ss_pred HhCHHhhhhhh--hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444321111 224444444442 2 23444333 33333322 22221222223445677777777633 5
Q ss_pred HHHHHHHHHHHHhCCcch-----HH---------HHhh-hCCcHHHHHHHhhc
Q 038217 572 VAEEAAGALALIVRQPIG-----AA---------AVGE-EEMAVTGLVGMMRC 609 (715)
Q Consensus 572 ~~~~al~~L~~La~~~e~-----~~---------~i~~-~g~~I~~Lv~lL~~ 609 (715)
..-.+..+|+.|..+..+ -. .+.+ .|. ||.++.+++.
T Consensus 655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gN-ipalvrLl~a 706 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGN-IPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCC-cHHHHHHHHH
Confidence 556666666666543333 22 2333 455 8998887665
No 408
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.59 E-value=3.3e+02 Score=29.04 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHH
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD--ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR 553 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 553 (715)
+...+..|.+. +++....++-.|..|+..+. .+.. -...|-.+++-+++-...+.+.|+.++..+...-.+...
T Consensus 90 l~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSD-DWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHhchH-HHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665 77777777777777776543 1111 124666777777766667788888888887664333322
Q ss_pred HHHhCChHHHHHhh-C-----ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 554 MIEAGAVTALVGAL-G-----HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 554 iv~aG~v~~Lv~lL-~-----~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
- ....++..| . +.-+++.|-.+|..+..+-.-.. +++.|...+++..++.+..++....+
T Consensus 166 ~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 166 Q----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred H----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhccccc
Confidence 2 223333333 1 33678888888888875422211 15666666777788888777554433
No 409
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.45 E-value=4.2e+02 Score=31.36 Aligned_cols=130 Identities=18% Similarity=0.111 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHhhcCCcc-HHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHHHHhh-----hCCcHHH
Q 038217 531 PRGKKDAVTALFNLSTHTDN-CVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGE-----EEMAVTG 602 (715)
Q Consensus 531 ~~~~~~A~~aL~nLs~~~~n-~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~~i~~-----~g~~I~~ 602 (715)
..+-++....|-.|+.-..+ .-+ -...++.+|.++ -++-..+.+.+|+..+-....++.+ -+.++..
T Consensus 276 ~~Gpk~islFl~kls~l~p~i~lr-----q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~l 350 (1128)
T COG5098 276 LSGPKDISLFLNKLSELSPGIMLR-----QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGL 350 (1128)
T ss_pred ccChHHHHHHHHHHhhcCchHHHH-----HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHH
Confidence 34445555555555543222 111 134567777644 3444455666666543111112222 1222445
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 603 LVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 603 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
|++-+.+.+|..|-.|+.++-.+|-.+..... +...++.....-+++.+..++++|..++.-|
T Consensus 351 l~ERl~D~~py~RtKalqv~~kifdl~sk~~~----~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 351 LVERLSDTYPYTRTKALQVLEKIFDLNSKTVG----RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHhCcccccc----hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 55555557899999999999999876532111 1122344556677888999999998866433
No 410
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.12 E-value=5.5e+02 Score=30.82 Aligned_cols=215 Identities=17% Similarity=0.141 Sum_probs=117.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc---hhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD---KNKSRI 469 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~---~nk~~I 469 (715)
..+...+++|....+..|+.- +..++| +.....++.|+.+.+.....-.-.|+.+|.-|-++. +.|-..
T Consensus 199 k~l~siiSsGT~~DkitA~~L---lvqesP-----vh~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~ 270 (988)
T KOG2038|consen 199 KWLYSIISSGTLTDKITAMTL---LVQESP-----VHNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKY 270 (988)
T ss_pred HHHHHHHhcCcchhhhHHHHH---hhcccc-----hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHH
Confidence 466677778887777776653 344444 344456777777776654444445555555443321 212122
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ....+..|- +. ...-+....|. ..+..+... ...|+.|..+....-+.++..|+..+++|-.+..
T Consensus 271 f-~qrp~~~l~----~~-~~~~k~Ll~Wy-----fE~~LK~ly---~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP 336 (988)
T KOG2038|consen 271 F-SQRPLLELT----NK-RLRDKILLMWY-----FEHELKILY---FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP 336 (988)
T ss_pred H-hhChhhhcc----cc-ccccceehHHH-----HHHHHHHHH---HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc
Confidence 1 111110000 00 00011111111 111222222 3577888888766667899999999999876544
Q ss_pred cHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHH-hCCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALGHE--GVAEEAAGALALI-VRQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKENAVAALLE 624 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~L-a~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~ 624 (715)
-..+ ..+..||.-|+|+ .+...|...|.+| +.+|..+..| +.-+..++.. -+.+.+-+|+..|-.
T Consensus 337 EqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv------i~EIer~~FRpn~~~ra~Yyav~fLnQ 406 (988)
T KOG2038|consen 337 EQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV------IDEIERLAFRPNVSERAHYYAVIFLNQ 406 (988)
T ss_pred HHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh------HHHHHHHHcccCccccceeehhhhhhh
Confidence 3322 2455678888865 6777777777766 5577665543 3344454444 356777788887765
Q ss_pred HHh-cCCHHHHHHHHh
Q 038217 625 LCR-SGGASATERVLK 639 (715)
Q Consensus 625 L~~-~~~~~~~~~l~~ 639 (715)
+.- +.+..++..++.
T Consensus 407 ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 407 MKLSHKESDVANRLIS 422 (988)
T ss_pred hHhccchHHHHHHHHH
Confidence 543 223445556654
No 411
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.95 E-value=30 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.1
Q ss_pred cHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 311 QTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 311 htfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
.|||..|.+..+ +..||.|+-.|..+
T Consensus 29 CTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHh---cCcCcCCCCccccC
Confidence 489999999987 45899999877543
No 412
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.55 E-value=33 Score=35.89 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=30.8
Q ss_pred CCCCcCccCccccc--------------C---cee--CCCccHhhHHHHHHHHHh-----C----CCCCCCCccccccC
Q 038217 289 PKDFCCPIMLDLMR--------------D---PVI--ISTGQTYDRRSIARWMEE-----G----HRTCPKTGQMLVHD 339 (715)
Q Consensus 289 ~~~~~CpIc~~lm~--------------d---Pv~--~~cghtfcr~cI~~w~~~-----~----~~~CP~c~~~l~~~ 339 (715)
+.+..||+|+.+-. | |.- .+|||. |..--.+||.+ | +..||.|.+.+.-.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 44778999986421 1 221 289996 44444555553 2 34699998877543
No 413
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.26 E-value=1.7e+02 Score=31.59 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCC---hhHHHHHHHHHHHhhcCCccHHHHHHh
Q 038217 490 EARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGT---PRGKKDAVTALFNLSTHTDNCVRMIEA 557 (715)
Q Consensus 490 e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~a 557 (715)
.+|-.|.++|.++......-..+.. +++.+..|++++.-++ ...+..|+.+|..++....-...++.+
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~a 308 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRA 308 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4677788888888777776666655 2459999999997644 477889999999999866544444443
No 414
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=35.13 E-value=4.8 Score=42.62 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=21.6
Q ss_pred CCcCccCcccccCceeCCC---c--cHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 291 DFCCPIMLDLMRDPVIIST---G--QTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~c---g--htfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.-.||+|+..-.--++..- | +-+|..|=.+|--. ...||.|+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 4699999987665555543 5 44699999999655 6689999854
No 415
>PRK14707 hypothetical protein; Provisional
Probab=35.07 E-value=1.3e+03 Score=31.39 Aligned_cols=213 Identities=15% Similarity=0.049 Sum_probs=100.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhh-hhcCchhhhhh
Q 038217 392 AELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLN-LSIYDKNKSRI 469 (715)
Q Consensus 392 i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~n-Ls~~~~nk~~I 469 (715)
+...+.-|+. .+......|+..|..-..++++.++.+-..|+-..|=.|-+-++..+...|+.+|.- ++.+.+-++.+
T Consensus 375 ~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~ 454 (2710)
T PRK14707 375 VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKAL 454 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhc
Confidence 3334444442 344455666666666666778888887766655555555555777777777777754 44444555555
Q ss_pred hhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChh-HHHHHHHHHHHhhcC
Q 038217 470 MDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPR-GKKDAVTALFNLSTH 547 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~-~~~~A~~aL~nLs~~ 547 (715)
- -.+ |...+..|++ +.++-.++.|-.+...|+...+.+..+-. .++...|-.|-+=.+.. ..+.+.++-..|..
T Consensus 455 ~-p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~-q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~- 530 (2710)
T PRK14707 455 D-PIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKP-QEVVIALHSLSKWPDTPICAEAASALAERVVD- 530 (2710)
T ss_pred C-hHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCH-HHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-
Confidence 4 333 3334444443 32444444444555566666555444433 33333333332222222 22222222222222
Q ss_pred CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
+.........--+..++.-|+ +....+.++..|..+.........-+..-. |..+++-+..
T Consensus 531 ~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~-Vs~llNaLSK 594 (2710)
T PRK14707 531 ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQG-VVIVLNALSK 594 (2710)
T ss_pred chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhH-HHHHHHhhcc
Confidence 222222222222333444443 334555555555544332223333333444 6666665554
No 416
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=34.69 E-value=14 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.779 Sum_probs=17.9
Q ss_pred CCccHhhHHHHHHHHHh----------CCCCCCCCcccc
Q 038217 308 STGQTYDRRSIARWMEE----------GHRTCPKTGQML 336 (715)
Q Consensus 308 ~cghtfcr~cI~~w~~~----------~~~~CP~c~~~l 336 (715)
.+||.|+ .||.+ |--+||.|+..-
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 4688876 48874 567999999653
No 417
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=34.56 E-value=1.8e+02 Score=24.63 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHHHH
Q 038217 55 QRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEI 134 (715)
Q Consensus 55 ~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~~l 134 (715)
.|+|=..||.||+-.-|+++.|...+. ++.+-....+.-.---+|++.|+..-. ..|+.....|..+..++
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~~-it~E~y~~V~a~~T~qdkmRkLld~v~--------akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKNDY-FSTEDAEIVCACPTQPDKVRKILDLVQ--------SKGEEVSEYFLYLLQQL 73 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCC-ccHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCchHHHHHHHHHHHH
Confidence 466778899999999999999987765 555444444443334455555544311 12344566677777766
Q ss_pred HHHhc
Q 038217 135 STLLD 139 (715)
Q Consensus 135 ~~~L~ 139 (715)
..+.-
T Consensus 74 ~~~y~ 78 (85)
T cd08324 74 ADAYV 78 (85)
T ss_pred HHhhh
Confidence 65543
No 418
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=34.31 E-value=2.9e+02 Score=25.69 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHH-HHHhhcc---CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLAN-GSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPH-LRNLLST---HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~-Lv~lL~s---~d~~~~~~A~~aL~nLs~ 461 (715)
+..+..|..+|.+ .++.++..|+..|..+.+.. ......|+..+++.. |++++.. .+..++...+..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3477888899984 58889999999999998765 355667777899987 9999963 345889988888888764
No 419
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.77 E-value=20 Score=27.13 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=12.1
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|..
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 46999999999974
No 420
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=33.60 E-value=8.5e+02 Score=30.43 Aligned_cols=141 Identities=16% Similarity=0.270 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhccccchhH--HHHhhhHHHHHHHHHHHHHHHHhccCCCCcc--cchHHHHHHHHHHHHHHH---hhh
Q 038217 95 YLLLYRCKILLDYCGQSSKLW--LLLQNHSISGHFHDLNQEISTLLDVFPADDI--ELSEDVREQIDLMQRQAR---NAK 167 (715)
Q Consensus 95 ~~al~~ak~Ll~~C~~~Skly--ll~~~~~i~~~f~~~~~~l~~~L~~lp~~~l--~~s~ev~e~v~~~~~q~~---~~~ 167 (715)
...|+..|.+++. |+. -+++|+.- -.++.+...| ++|+.||-..- .||.+.++||..+++++. ||-
T Consensus 1014 K~QMDaIKqmIek-----Kv~L~~L~qCqdA-LeKqnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV 1086 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEK-----KVVLQALTQCQDA-LEKQNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAV 1086 (1439)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHH-HHhhhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4445666666554 222 23344332 2334444444 46677765432 289999999999988754 333
Q ss_pred ccC-CchhHHHHHHHHHhhh-------hhccCCCCChHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCcc-chh
Q 038217 168 LHI-DKNDELLRLRLFSFLD-------EFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEP-TAS 238 (715)
Q Consensus 168 ~~~-d~~d~~l~~~l~~~l~-------~~~~~~~~d~~~l~~~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~-~~~ 238 (715)
-.. -...+..+..-..++. ..++...+|.+..+. .|.....|++|+.-|+.|...+....++ +.+
T Consensus 1087 ~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK------~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFS 1160 (1439)
T PF12252_consen 1087 VTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKK------AIANLNNLQQELKLLRNEKIRMHSGTDKVDFS 1160 (1439)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHH------HHHHHHHHHHHHHHHHhHHHhhccCCCcccHH
Confidence 221 1223333333333332 123333334333332 2334567899999999999886644443 555
Q ss_pred hHhhHHHHHh
Q 038217 239 VLNGFVAIMR 248 (715)
Q Consensus 239 ~l~~l~~l~~ 248 (715)
.++.|-.-+.
T Consensus 1161 DIEkLE~qLq 1170 (1439)
T PF12252_consen 1161 DIEKLEKQLQ 1170 (1439)
T ss_pred HHHHHHHHHH
Confidence 5565544443
No 421
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=33.35 E-value=61 Score=31.51 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc-cHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP-NRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p-n~~l~~~i~~~~~~ 357 (715)
..+..|.||.|..-+. |+.. +.. .++||.|+..+...+-.+ ...++..+...-..
T Consensus 109 ~~~~~y~C~~~~~r~s----------fdeA-----~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 109 TENNYYVCPNCHVKYS----------FDEA-----MEL-GFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred ccCCceeCCCCCCccc----------HHHH-----HHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 3455899998765443 4443 333 589999999886554333 34455555555444
No 422
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.06 E-value=1.6e+02 Score=31.20 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=73.9
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhhccCccccccchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHH
Q 038217 20 AFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLY 99 (715)
Q Consensus 20 ~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~ 99 (715)
.+.||.++.|..++..+=.+.+ ...++ +++++||+- |--+..+.++. .-+..+...|+...+
T Consensus 85 fVI~Pv~idP~gIi~R~~~Ll~----~~~dr--------~~~~v~r~~---p~~D~v~r~~l---~~a~ev~~~m~~I~K 146 (368)
T COG4046 85 FVIPPVDIDPAGIIDRLRHLLE----MGEDR--------FRKLVRRLV---PAADGVRRSNL---EMALEVAASMNFIYK 146 (368)
T ss_pred eecCcccCCccchHHHHHHHHH----hhhHH--------HHHHHHHcC---CcccceehhhH---HHHHHHHHHHHHHHH
Confidence 4668899999888888766554 22222 455555543 33233322222 345666677777777
Q ss_pred HHHHHHHhccccchhHHHHhhhHHHHHHHHHHHHHHHHhccC-CCCccc
Q 038217 100 RCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVF-PADDIE 147 (715)
Q Consensus 100 ~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~l-p~~~l~ 147 (715)
-.+..+..-++-.-+||+++-+.+.-.|.++.+....+.+.+ .-.+++
T Consensus 147 ~vrH~l~~ArKt~n~~Ll~qLqm~lp~i~k~a~ay~~a~nafikgvPIG 195 (368)
T COG4046 147 YVRHYLLLARKTNNLQLLVQLQMLLPLIKKIADAYMEACNAFIKGVPIG 195 (368)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 666677767777778999999999999999999988888876 444443
No 423
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.45 E-value=47 Score=29.42 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.3
Q ss_pred ccHhhHHHHHHHHHh--------CCCCCCCCcc
Q 038217 310 GQTYDRRSIARWMEE--------GHRTCPKTGQ 334 (715)
Q Consensus 310 ghtfcr~cI~~w~~~--------~~~~CP~c~~ 334 (715)
.-.||..|+..++.+ +...||.|+-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 556999999999864 4578999975
No 424
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.35 E-value=2.2e+02 Score=33.74 Aligned_cols=94 Identities=19% Similarity=0.083 Sum_probs=51.4
Q ss_pred cCcHHHHHHH-hhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchH
Q 038217 516 SGAVEALATL-LRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGA 590 (715)
Q Consensus 516 ~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~ 590 (715)
.++|..|+.. +.+.+.+++..|..+|.=.+. +++. .+..|.+|+ ++.++-.++.+|..-|.....+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 3456666655 445566777777777755443 3322 344566664 5677777777777666555554
Q ss_pred HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
.+| ..|-.|+.+...-+|.-|+-++..+
T Consensus 624 eAi-------~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 624 EAI-------NLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred HHH-------HHHhhhhcChHHHHHHHHHHHHHHH
Confidence 443 2222233333344455555554443
No 425
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.25 E-value=3.2e+02 Score=26.02 Aligned_cols=142 Identities=11% Similarity=0.103 Sum_probs=72.5
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.+..|.+.|++ .++..++++++.|..+-.-+|.-...+....- .-. -...+..... ..+.+...... -+..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~---~~l~~~~~~~~-~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTD---ISLPMMGISPS-SEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchh---hHHhhccCCCc-hHHH
Confidence 56777888874 46899999999999988777655443322111 000 0001111111 11111111111 1112
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
- -..++..|+.+|+...-..-...+..++.++-.... ....+ ...+|.+++.++..++..++.-..-|..|
T Consensus 83 y-~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L---~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 Y-PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL---PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred H-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH---HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 244678888888775222233344444444432111 12222 46889999999876666666555444444
No 426
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.15 E-value=3e+02 Score=25.61 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=51.9
Q ss_pred HHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHH-HHHHhhcC---CHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALVGL-LQALLFTG---TKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~-L~~Ll~s~---~~~~k~~A~~lL~~l~ 670 (715)
+..|-+-|.. .++..+..|+.+|-.+..+.|......+.. -+++.. |+.++... ...++.+...+++-..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias-k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK-KDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 5566665553 478889999999999999999888888887 678886 89988632 3477888655555544
No 427
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=32.07 E-value=1.4e+02 Score=35.16 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=71.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-h----cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD-E----EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY 508 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~----~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 508 (715)
...++.+|.+..-.++...+.+..|+..+-....+++. - ...+..+++-|... ++-+|..|...+..+...+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~s- 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNS- 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcc-
Confidence 35677888888888888888888888766555555551 0 23444444545554 77888888877766644221
Q ss_pred HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
...+.....+...++.+++.+.-++++|+..+..|-..
T Consensus 379 -k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 379 -KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred -cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 11122234455667777777788888888888877543
No 428
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=31.65 E-value=25 Score=30.10 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=29.9
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|-||..-...| |+.||..|-.+ ...|..|+..+..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 45899999876655 88999999654 5699999988743
No 429
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=30.54 E-value=3.8e+02 Score=27.88 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=27.8
Q ss_pred hHHHHHHcCChH-HHHHhhcc--CCHHHHHHHHHHHhhhhc
Q 038217 424 NRAFIAKAGAIP-HLRNLLST--HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 424 ~r~~i~~~G~i~-~Lv~lL~s--~d~~~~~~A~~aL~nLs~ 461 (715)
.|.++.+.+.++ -|+.+|.+ ++..+-..++..|.+|+.
T Consensus 32 v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 32 VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 355566666665 47777655 478899999999999976
No 430
>KOG1908 consensus Ribonuclease inhibitor type leucine-rich repeat proteins [RNA processing and modification]
Probab=30.03 E-value=59 Score=29.58 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=31.5
Q ss_pred HHHHhhccCccccccchhhHHHHHHHHHHhHHhHHHHH-------h-cCCCCChhHHHhHHHHHHHHH
Q 038217 40 SSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLR-------D-SGTCIESTAVLCFKELYLLLY 99 (715)
Q Consensus 40 ~~~i~~~~~~~~~~~~kk~~~~l~r~i~ll~~lleel~-------~-~~~~~~~~~~~~l~~L~~al~ 99 (715)
+.+|..+.+. .+||+||+..+.-.+-|.-| ..+- + .+..++-....+|+++..-+|
T Consensus 77 s~Eii~AYke---ACQk~nCap~aalekQig~F-h~~~d~R~d~L~LKGEkl~haq~EALEEiFKRlQ 140 (165)
T KOG1908|consen 77 SDEIIGAYKE---ACQKLNCAPIAALEKQIGEF-HDLGDHRLDCLDLKGEKLDHAQCEALEEIFKRLQ 140 (165)
T ss_pred HHHHHHHHHH---HHHHccccchHHHHHHHHHH-hcCcchhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence 3444444333 57999999887666544433 1111 1 122355567777777766655
No 431
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=29.85 E-value=90 Score=28.27 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHh---hcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHH
Q 038217 573 AEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM---RCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQA 649 (715)
Q Consensus 573 ~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL---~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~ 649 (715)
....+.-|+.++.+......|. ..|.+-| ...+....-.|+.+|-.|+.++++.+...+......+..|..
T Consensus 20 ~~~~l~eIa~~t~~~~~~~~I~------~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~ 93 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNSKDCQEIM------DVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQD 93 (125)
T ss_dssp -HHHHHHHHHHTTSCHHHHHHH------HHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG
T ss_pred CHHHHHHHHHHHhccccHHHHH------HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcce
Confidence 3445555666655554444443 4555545 335677888999999999999988888888764445555555
Q ss_pred Hhh---cCCH---HHHHHHHHHHHHHHHh
Q 038217 650 LLF---TGTK---RARRKAASLARVFQRC 672 (715)
Q Consensus 650 Ll~---s~~~---~~k~~A~~lL~~l~~~ 672 (715)
+-. .|.+ .++.+|..++.+|.+.
T Consensus 94 f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 94 FQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp ---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred eeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 432 2333 4799999999998764
No 432
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.76 E-value=38 Score=41.19 Aligned_cols=49 Identities=14% Similarity=-0.088 Sum_probs=31.7
Q ss_pred CCCCCcCccCcccccCceeCCCcc-----HhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQ-----TYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cgh-----tfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
......||-|+........-.||. .||..|- +. .+...||.|+......
T Consensus 623 EVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~-~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IE-VEEDECEKCGREPTPY 676 (1121)
T ss_pred cccCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--Cc-CCCCcCCCCCCCCCcc
Confidence 345678999998763332335874 4898882 22 2346799999887543
No 433
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=29.66 E-value=25 Score=36.69 Aligned_cols=25 Identities=12% Similarity=0.394 Sum_probs=16.2
Q ss_pred CCcCccCccccc-CceeC--CCccHhhH
Q 038217 291 DFCCPIMLDLMR-DPVII--STGQTYDR 315 (715)
Q Consensus 291 ~~~CpIc~~lm~-dPv~~--~cghtfcr 315 (715)
.|.||+|..-|. ++-.+ ++||+|+.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 489999999885 12222 55677754
No 434
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=29.66 E-value=22 Score=26.49 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=9.2
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|..
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 47999999999974
No 435
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=29.65 E-value=4.6e+02 Score=27.41 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=48.1
Q ss_pred cCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHH--HHHHhCChHHHHHhhC------------C--hhHHHHHHHH
Q 038217 516 SGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCV--RMIEAGAVTALVGALG------------H--EGVAEEAAGA 579 (715)
Q Consensus 516 ~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~--~iv~aG~v~~Lv~lL~------------~--~~~~~~al~~ 579 (715)
.-.+|.++.++.+.++..+..++.+|..+........ .+.+.|..+.+-..+. + ..+...+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4579999999988889999999999999987443222 3556676555544431 1 1566667777
Q ss_pred HHHHhC
Q 038217 580 LALIVR 585 (715)
Q Consensus 580 L~~La~ 585 (715)
|..|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 776643
No 436
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.56 E-value=24 Score=22.76 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.9
Q ss_pred CccCcccc
Q 038217 294 CPIMLDLM 301 (715)
Q Consensus 294 CpIc~~lm 301 (715)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 437
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=26 Score=36.54 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=27.8
Q ss_pred CcCccCcccccC-ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 292 FCCPIMLDLMRD-PVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 292 ~~CpIc~~lm~d-Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
-.|--|.--..- =-+++|.|.||..|-.. ...+.||.|.-++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHH
Confidence 356666543322 22569999999999753 2267999997554
No 438
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=28.75 E-value=23 Score=36.76 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=34.8
Q ss_pred CCcCccCcccccC-c-eeC-CCccHhhHHHHHHHHHh----------------------CCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRD-P-VII-STGQTYDRRSIARWMEE----------------------GHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~d-P-v~~-~cghtfcr~cI~~w~~~----------------------~~~~CP~c~~~l~~ 338 (715)
.-.|.||+.=|.+ | .+. +|-|-|-..|+.+|+.. ....||+|+.++..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4589999976653 5 443 89999888999888764 12358999887653
No 439
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=28.74 E-value=23 Score=33.33 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHH-HhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWM-EEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~-~~~~~~CP~c~~~l~~ 338 (715)
-...|.||-|...+.. .-..... ..|.+.||.|+..+..
T Consensus 96 ~~~~Y~Cp~C~~~y~~------------~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 96 NNAYYKCPNCQSKYTF------------LEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CCcEEECcCCCCEeeH------------HHHHHhcCCCCcEECCCCCCEEEE
Confidence 3558999977755441 1111111 1245899999998854
No 440
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.68 E-value=32 Score=35.52 Aligned_cols=32 Identities=28% Similarity=0.713 Sum_probs=0.0
Q ss_pred CcCccCcccccCceeCCCccHhhHHHHHHHHHhCC---------CCCCCCccccccC
Q 038217 292 FCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGH---------RTCPKTGQMLVHD 339 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~---------~~CP~c~~~l~~~ 339 (715)
+.|+||+..|..| |+-+|+ +.||.|++.+.++
T Consensus 188 c~C~iCGKaFSRP----------------WLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 188 CECGICGKAFSRP----------------WLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccccccch----------------HHhhcccccccCCCCccCCcccchhcch
No 441
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=28.56 E-value=35 Score=42.21 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=29.6
Q ss_pred CCCCCCCcCccCc--ccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 286 LSIPKDFCCPIML--DLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 286 ~~~~~~~~CpIc~--~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
..+|.++.||-|. +...|+- +..| |+. ....||.|+.++...
T Consensus 909 NPL~PHY~Cp~Cky~Ef~~d~s-vgsG--fDL---------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 909 NPLPPHYLCPECKYSEFIDDGS-VGSG--FDL---------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCCccccCCCCceeeeecCCC-cCCC--CCC---------CCCCCCcCCCccccC
Confidence 5689999999998 4555552 2333 432 478999999998654
No 442
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=37 Score=36.51 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=33.3
Q ss_pred CcCccCcccccC---ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRD---PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~d---Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.|.|+++.|.+ |++.+.|++|-...|..|-...+-.||.++..+..
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 567777777753 66778888888888888765534778887766544
No 443
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.34 E-value=39 Score=23.29 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=7.2
Q ss_pred CCCCCCCccc
Q 038217 326 HRTCPKTGQM 335 (715)
Q Consensus 326 ~~~CP~c~~~ 335 (715)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4578888764
No 444
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=28.16 E-value=2.3e+02 Score=24.41 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=44.1
Q ss_pred ccchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhcc
Q 038217 53 FFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCG 109 (715)
Q Consensus 53 ~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~ 109 (715)
.+.|+|=..|++++.-..++|+.|...+. +...-...+..-...-++|+.|+..-.
T Consensus 9 ~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~ 64 (94)
T cd08329 9 SLIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVL 64 (94)
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 56799999999999889999999998775 666666666555555689999988744
No 445
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=27.71 E-value=5.7e+02 Score=29.80 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=91.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-h
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD-E 472 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~ 472 (715)
-+++...+-+...+..+...|+.....-|+. +..-.++...-..|+..+..++...+.+|..|+..+.+...|.. -
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3445555556667777888888777655544 33444777777788888899999999999999998877664441 2
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
...-..+++++..+.+. +|..+..++..|....- -....|.-...++-++.++.++.-...+.++|.
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~------L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV------LSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc------cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 55677788888887454 88888888877753211 001222233334445555544444445555543
No 446
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.59 E-value=13 Score=39.46 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCcCccCcccccCceeCC----Cc--cHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 291 DFCCPIMLDLMRDPVIIS----TG--QTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~----cg--htfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.-.||+|+..-.--++.. -| +-+|..|=.+|--. ...||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 459999998754444332 34 34688899999655 6789999964
No 447
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=27.20 E-value=2.6e+02 Score=30.67 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=60.4
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHH
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQR 671 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~~ 671 (715)
|+..|.+-|...++-+.-.|+.+|-.+..+.+...+..+.. ..+...|..|+. +..++++.|-+.+++-..+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsS-r~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSS-RDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhh-hhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 37777787888899999999999999999988877777777 779999999998 6688888888887776665
No 448
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.19 E-value=2.8e+02 Score=26.37 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=49.5
Q ss_pred ccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHH---HHHHHHHHHhcCCCCCCCCCCCCCcccccccCCChhHHH
Q 038217 310 GQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL---RNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVE 386 (715)
Q Consensus 310 ghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (715)
.+.||..|=.+-+.. ||.|+.++.-..-.+...- ..-.-.||..-|.++ ++ ...+++
T Consensus 27 ~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpy--------PW--------t~~~L~ 86 (158)
T PF10083_consen 27 REKFCSKCGAKTITS----CPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPY--------PW--------TENALE 86 (158)
T ss_pred HHHHHHHhhHHHHHH----CcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCC--------ch--------HHHHHH
Confidence 356999998877654 9999988754432211100 001345666666543 11 112232
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH
Q 038217 387 ANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRA 426 (715)
Q Consensus 387 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~ 426 (715)
+ ...|+..+..-+++.+.+--..|..|.+++|....
T Consensus 87 a----a~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~v 122 (158)
T PF10083_consen 87 A----ANELIEEDEELSPDEKEQFKESLPDLTKDTPKTKV 122 (158)
T ss_pred H----HHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccHH
Confidence 2 23444444445566666666666667766654443
No 449
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.16 E-value=1e+03 Score=27.66 Aligned_cols=207 Identities=16% Similarity=0.149 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH----HcCC---hHHHHHhhccCCHHHHHHHHHHHhhhhcCc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIA----KAGA---IPHLRNLLSTHNPVAQENSVTAMLNLSIYD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~----~~G~---i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~ 463 (715)
.+..|+..|+.-+.+........+..-. .....|..+. ..|- +..+..++..+... ...|...|..|....
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~ 425 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHV 425 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhc
Confidence 3566677777666665555444443321 1134444443 3454 44555666653332 233556666665443
Q ss_pred -hhhhhhhhhcCcHHHHHHHHhc---CCCHHHHHHHHHHHHHhcc----Cc------hhHHHHhcccCcHHHHHHHhh--
Q 038217 464 -KNKSRIMDEEGCLGSIVKVLRF---GLTTEARENAAATLFSLSA----VH------EYKKKIADESGAVEALATLLR-- 527 (715)
Q Consensus 464 -~nk~~I~~~~g~i~~Lv~lL~~---~~~~e~~~~Aa~~L~~Ls~----~~------~~~~~I~~~~g~I~~Lv~LL~-- 527 (715)
..-. ..+..+..+++. ..+..++..|.-++..|.. .. ..+..... ...++.|...+.
T Consensus 426 ~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~ 498 (618)
T PF01347_consen 426 RRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEA 498 (618)
T ss_dssp ----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHH
T ss_pred CCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHH
Confidence 2222 223344444432 1145566666666655542 21 01111111 356777777665
Q ss_pred --cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcH
Q 038217 528 --LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-----HEGVAEEAAGALALIVRQPIGAAAVGEEEMAV 600 (715)
Q Consensus 528 --~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I 600 (715)
.++...+..++.+|.|+-. -..++.|..++. +..++..|+.+|..++... . ... .
T Consensus 499 ~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~---~----~~v-~ 560 (618)
T PF01347_consen 499 VSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC---P----EKV-R 560 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----H----HHH-H
T ss_pred hhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC---c----HHH-H
Confidence 2455777888999999842 135677777774 2367777888887764321 1 111 4
Q ss_pred HHHHHHhhc--CChHHHHHHHHHHHH
Q 038217 601 TGLVGMMRC--GTPRGKENAVAALLE 624 (715)
Q Consensus 601 ~~Lv~lL~~--~s~~~ke~A~~~L~~ 624 (715)
+.|..+..+ ...+.|-.|..+|..
T Consensus 561 ~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 561 EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 566666555 245666666554433
No 450
>PRK00420 hypothetical protein; Validated
Probab=27.07 E-value=29 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=19.0
Q ss_pred CcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
-.||.|+..+.. +..|...||.|+..+.-
T Consensus 24 ~~CP~Cg~pLf~------------------lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFE------------------LKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCccee------------------cCCCceECCCCCCeeee
Confidence 489998865542 12346679999876543
No 451
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=2.7e+02 Score=33.14 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=44.1
Q ss_pred hHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHH
Q 038217 434 IPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKK 510 (715)
Q Consensus 434 i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~ 510 (715)
.|..|.+|+ +.++-++..|+.+|.--+....++..|- .+++++ ++...=+|+.|+-++..+-. .+..+.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~----lLepl~----~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN----LLEPLT----SDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH----HHhhhh----cChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 455666664 3567777777777777666666555554 233332 22133455555544443321 222222
Q ss_pred HHhcccCcHHHHHHHhhcCCh
Q 038217 511 KIADESGAVEALATLLRLGTP 531 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~ 531 (715)
+. .|..+.+.+++.+.++
T Consensus 662 kv---~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 662 KV---NGFRKQLEKVINDKHE 679 (929)
T ss_pred hH---HHHHHHHHHHhhhhhh
Confidence 22 3455566666655443
No 452
>PF04641 Rtf2: Rtf2 RING-finger
Probab=26.65 E-value=64 Score=33.49 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=31.8
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHhC
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEG 325 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~ 325 (715)
-+.|+|+++.+.+||+. .-|+-|....|.+|+...
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 67999999999999966 689999999999999874
No 453
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.63 E-value=17 Score=38.54 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=31.5
Q ss_pred CCCcCccCcccccCceeC---CCcc--HhhHHHHHHHHHhCCCCCCCCcc
Q 038217 290 KDFCCPIMLDLMRDPVII---STGQ--TYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~---~cgh--tfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
..-.||+|+..-.--|+. .-|+ -+|..|=.+|--. ...||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 356999999875544432 2443 4588899999655 678999996
No 454
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=3.2e+02 Score=31.48 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=51.9
Q ss_pred cCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHH
Q 038217 516 SGAVEALATL-LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAA 591 (715)
Q Consensus 516 ~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~ 591 (715)
.|+|..|+.. +.+++.+++..|+.+|.-.|..+.+ .++..+++|+ +..++-..+-+|...|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 5677777776 5667788888888887766654332 3444566664 33454444444444333222211
Q ss_pred HHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 592 AVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
++..|-.++....+-+|..|+-++..+..
T Consensus 622 -------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 -------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 13344444444445555555555544443
No 455
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.54 E-value=3.3e+02 Score=33.08 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh---ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHh
Q 038217 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL---STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLR 484 (715)
Q Consensus 408 ~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL---~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~ 484 (715)
+-.+..|.-|... .+.-..+.+.|.=..++-+. ..+|.-+.-.++..|+.|+.+..-...++ +.|+|..|+.+=+
T Consensus 327 ~~~~q~l~~lgey-~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv-~~~gi~kll~vpr 404 (1516)
T KOG1832|consen 327 KYCIQCLEILGEY-VEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFV-ERRGILKLLAVPR 404 (1516)
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHH-HhhhhHHHhcCCC
Confidence 4455555555533 34445556666433332222 23566667778889999999998889999 8888877766643
Q ss_pred cCCCHHHHHHHHHHHHHhccCchhHHHHhcc-----cCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhC
Q 038217 485 FGLTTEARENAAATLFSLSAVHEYKKKIADE-----SGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAG 558 (715)
Q Consensus 485 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~-----~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG 558 (715)
- .++-.....+|..++.+...-..++.. ..++..-+.||.-....+.++++.. +..|. ....-..+-...
T Consensus 405 ~---s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~f-f~~~f~frail~~fd~~d 480 (1516)
T KOG1832|consen 405 V---SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALF-FAAAFVFRAILDAFDAQD 480 (1516)
T ss_pred c---hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHH-HHHHHHHHHHHHHHhhhh
Confidence 3 355555567788888777654444331 2334444455654445566655443 22232 222233333445
Q ss_pred ChHHHHHhhC
Q 038217 559 AVTALVGALG 568 (715)
Q Consensus 559 ~v~~Lv~lL~ 568 (715)
.+..|+.+++
T Consensus 481 ~l~~l~~~~~ 490 (1516)
T KOG1832|consen 481 SLQKLLAILK 490 (1516)
T ss_pred HHHHHHHHHH
Confidence 6677777664
No 456
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.49 E-value=4.3e+02 Score=26.24 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhccCccccccchhhHHHHHHHHHHhHHhHHHHHhcCCCCCh-----hHHHhHHHHHHHHHHHHHHHH
Q 038217 32 LVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIES-----TAVLCFKELYLLLYRCKILLD 106 (715)
Q Consensus 32 l~~~l~~~~~~i~~~~~~~~~~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~-----~~~~~l~~L~~al~~ak~Ll~ 106 (715)
.=..++.++.+|+......-|.+||+++...-.+++-..-.+++|++.=.+.|. .+..++++...|.---.-+-.
T Consensus 18 ~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 18 AREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 345677788888765555446899999999999999999999999854333333 344566666655543333333
Q ss_pred hcccc
Q 038217 107 YCGQS 111 (715)
Q Consensus 107 ~C~~~ 111 (715)
.|..+
T Consensus 98 ~~~ps 102 (204)
T COG2178 98 GRLPS 102 (204)
T ss_pred CCCCC
Confidence 34444
No 457
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.32 E-value=1.6e+02 Score=31.22 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------------hhhHHHHHHcCChHHHHHhhcc
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTG--------------KENRAFIAKAGAIPHLRNLLST 443 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~--------------~~~r~~i~~~G~i~~Lv~lL~s 443 (715)
.+..+..++..|.+++...+..|++.|..++.+. ..|-..+.+.|+++.|+.+|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3568889999999999999999999999888543 3455567788999999998863
No 458
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=26.17 E-value=55 Score=38.68 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=37.8
Q ss_pred CCCCcCccCcc--cccCceeCCCccH-----hhHHHHHHHHHh-CCCCCCCCccccccC
Q 038217 289 PKDFCCPIMLD--LMRDPVIISTGQT-----YDRRSIARWMEE-GHRTCPKTGQMLVHD 339 (715)
Q Consensus 289 ~~~~~CpIc~~--lm~dPv~~~cght-----fcr~cI~~w~~~-~~~~CP~c~~~l~~~ 339 (715)
.|+-.|.||.. .-.||..-||.++ ..++|+-+|+.. +...|-.|+.+..-+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 45678999873 4557776677653 479999999985 567899999876543
No 459
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.00 E-value=7.6e+02 Score=25.65 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC----CHHHHHHHHHHHhhhhcC
Q 038217 391 TAELLIQQLANGS----PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH----NPVAQENSVTAMLNLSIY 462 (715)
Q Consensus 391 ~i~~Lv~~L~s~~----~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~----d~~~~~~A~~aL~nLs~~ 462 (715)
.++.++..+.+++ ......++..|..+|... ..+.+..+......+ ..+-...++..|..--..
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P 183 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP 183 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc
Confidence 5667777776655 234556777777777331 122333333333221 223333444444332211
Q ss_pred chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 463 DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 463 ~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
+- ....+..++.+|.++ ..-.+...+.+|..|-..-+.+...+ ++.|.+|+++++.+. -..|+.+|-
T Consensus 184 ~~-------~~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~~~--~dlispllrlL~t~~---~~eAL~VLd 250 (262)
T PF14225_consen 184 DH-------EFQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSPHG--ADLISPLLRLLQTDL---WMEALEVLD 250 (262)
T ss_pred hh-------HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCCcc--hHHHHHHHHHhCCcc---HHHHHHHHH
Confidence 11 234566788999998 88999999999999877666554444 468999999997543 334555544
Q ss_pred Hh
Q 038217 543 NL 544 (715)
Q Consensus 543 nL 544 (715)
+.
T Consensus 251 ~~ 252 (262)
T PF14225_consen 251 EI 252 (262)
T ss_pred HH
Confidence 33
No 460
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.91 E-value=8.6e+02 Score=27.15 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHhhh--hc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLST------HNPVAQENSVTAMLNL--SI 461 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~d~~~~~~A~~aL~nL--s~ 461 (715)
++..|..+++|....+-..|+..|..+.++. ......+.+-.++.-|+++++- ....++...+..|+.- +.
T Consensus 46 Av~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~l 125 (594)
T KOG1086|consen 46 AVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSL 125 (594)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecC
Confidence 5678888999988888888888888877643 2223334444566667777653 2344555556666543 33
Q ss_pred Cchhh-----------------------------------hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 462 YDKNK-----------------------------------SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 462 ~~~nk-----------------------------------~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
-++-| ..|.++..--..|..+|++. .+|-.+.|-..+.+|...+
T Consensus 126 pe~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn-~PeDLqaANkLIK~lVkee 204 (594)
T KOG1086|consen 126 PEEPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSN-HPEDLQAANKLIKTLVKEE 204 (594)
T ss_pred cccchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHH
Confidence 22211 11111222345667788877 7777888888888888766
Q ss_pred hhHH
Q 038217 507 EYKK 510 (715)
Q Consensus 507 ~~~~ 510 (715)
+.|.
T Consensus 205 e~k~ 208 (594)
T KOG1086|consen 205 EHKL 208 (594)
T ss_pred HHHH
Confidence 6443
No 461
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=25.81 E-value=49 Score=39.10 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=49.0
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-----CCCCCCCCccccccCCCCccHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-----GHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 354 (715)
....-.+.|||++.-|.-|+-- .|.|-=|-... |+.. +...||+|.+....+.++-+.-+..++...
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~ 373 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSC 373 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhc
Confidence 4556689999999999999865 89875443322 3322 457899999988888888888777766553
No 462
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=25.65 E-value=4e+02 Score=32.14 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=79.2
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhC-CcchHHHHh
Q 038217 518 AVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVR-QPIGAAAVG 594 (715)
Q Consensus 518 ~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~-~~e~~~~i~ 594 (715)
.-..+...+..++....+..+.++.+++.-.....+- ...-.+.-..-..+ ..+......+|..++. .++....++
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3345566666777888888899998887643311111 11111222222211 3667778888899987 466777777
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCH-HHHHHHHh
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGA-SATERVLK 639 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~l~~ 639 (715)
....+...++.++-++.+...+.|..+|.......+. +..+++.+
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7666689999999999999999999999998764432 34444544
No 463
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.41 E-value=37 Score=30.22 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=9.6
Q ss_pred CCCCCCCccccccC
Q 038217 326 HRTCPKTGQMLVHD 339 (715)
Q Consensus 326 ~~~CP~c~~~l~~~ 339 (715)
.-+||+|+..+...
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 45688888766554
No 464
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.17 E-value=6.6e+02 Score=25.48 Aligned_cols=132 Identities=15% Similarity=0.018 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHH------------------HHHHHHhhcCC
Q 038217 487 LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDA------------------VTALFNLSTHT 548 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A------------------~~aL~nLs~~~ 548 (715)
.+......++..+..|...++....+.. .+.++.+...|..-++..-..+ ...|.-||.++
T Consensus 76 ~~~~y~~vGc~L~~~Ll~~~eG~~~l~~-~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~ 154 (226)
T PF14666_consen 76 NNQKYVRVGCQLLETLLSSPEGIKYLSE-SKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTP 154 (226)
T ss_pred cchHHHHHHHHHHHHHHcCcHHHHHHHH-ccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCCh
Q ss_pred ccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 549 DNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.....+-+.|.+..+..++....-.+...-+|.+|=..-++...++=..+ |.+++...|-.|..-|..+.+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~klil~~LDY~~~~~~R~iLsKa--------Lt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLLKLILSSLDYSVDGHPRIILSKA--------LTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHHHHHHhhCCCCCccHHHHHHHHH--------HhcCCHHHHHHHHHHHHHHhc
No 465
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.03 E-value=2.1e+02 Score=32.44 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-HHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRA-FIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNL 459 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~-~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nL 459 (715)
.++..|.++|.+.+..++.-|+..|..+.+..-..-+ .|++.+++.-+|...+. .+..+|+.++..|-.-
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 3778899999988889999999988888876655544 78889999999998875 4788999999888543
No 466
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.86 E-value=2.7e+02 Score=23.35 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhcc
Q 038217 55 QRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCG 109 (715)
Q Consensus 55 ~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~ 109 (715)
-++|=..|+.|+.-+.|+++.|...+. +.+........-.---++|+.|+...-
T Consensus 3 v~~~r~~Li~~v~~v~~ilD~L~~~~V-it~e~~~~I~a~~T~~~kar~Lld~l~ 56 (82)
T cd08330 3 VDQHREALIARVTNVDPILDKLHGKKV-ITQEQYSEVRAEKTNQEKMRKLFSFVR 56 (82)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCCC-CCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 467778999999999999999997665 666666555555555677888877643
No 467
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.41 E-value=1.3e+03 Score=27.72 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=39.3
Q ss_pred HHHHHHHHHhHHhHHHHHhcCCC----CChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHHHHH
Q 038217 60 RSLIRKMEAFLVLLEYLRDSGTC----IESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEIS 135 (715)
Q Consensus 60 ~~l~r~i~ll~~lleel~~~~~~----~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~~l~ 135 (715)
.+|++--+++.+....|.+. .+ .......+......-++++|..|..-.+| +-.-|.+..+|..+....-
T Consensus 4 ~ql~qlt~i~~~~~~~L~~~-i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~-----l~~ID~ai~~~l~lIe~~v 77 (683)
T PF08580_consen 4 NQLSQLTSILLPIALYLSES-IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREG-----LEEIDSAISRFLDLIEVYV 77 (683)
T ss_pred HHHHHHHhcccchHHHHHHH-hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhhc
Confidence 46777778888888888764 11 01112223334444445555555544333 2345667777776666544
Q ss_pred HHhc
Q 038217 136 TLLD 139 (715)
Q Consensus 136 ~~L~ 139 (715)
.+.+
T Consensus 78 ~~ie 81 (683)
T PF08580_consen 78 SAIE 81 (683)
T ss_pred cccc
Confidence 4433
No 468
>PRK11820 hypothetical protein; Provisional
Probab=24.36 E-value=8.2e+02 Score=25.84 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHHHHHHHh
Q 038217 59 SRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLL 138 (715)
Q Consensus 59 ~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~~l~~~L 138 (715)
...+..|+..|..++++|+...+ ...-...+.|..-++. ++.. -+-. .+..++.-..
T Consensus 154 ~~dl~~rl~~i~~~~~~i~~~~p---~~~~~~~~rL~~rl~e---l~~~-~d~~----------------Rl~qEval~a 210 (288)
T PRK11820 154 KADLLQRLDAIEALVAKIEALAP---EILEEYRERLRERLEE---LLGE-LDEN----------------RLEQEVALLA 210 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHH---HHhh-cCHH----------------HHHHHHHHHH
Confidence 45677788888888888874332 1222223333333333 2211 1111 2234444444
Q ss_pred ccCCCCcccchHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHhhhhhccCCCCChHHHHHHhhhcCC---CC-CHHH
Q 038217 139 DVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLG---IK-DAKT 214 (715)
Q Consensus 139 ~~lp~~~l~~s~ev~e~v~~~~~q~~~~~~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~~l~~~~~~~l~---l~-~~~~ 214 (715)
+-+ ||.|.+.-++..+.+.+..++. +..+++.+--++|+..+ +++-+..| -. ++ -.-+
T Consensus 211 dK~---------DI~EEi~RL~sHl~~f~~~L~~-~~~vGrkLDFL~QEm~R-------E~NTigSK-s~~~~is~~vVe 272 (288)
T PRK11820 211 QKA---------DIAEELDRLKSHLKEFREILKK-GGPVGRKLDFLMQELNR-------EANTLGSK-SNDAEITNLVVE 272 (288)
T ss_pred HHc---------chHHHHHHHHHHHHHHHHHHhc-CCCCCcchhHHHHHHhH-------HHHHHHHc-cCcHHHHHHHHH
Confidence 433 4445555566555555544422 33566666666663322 33334333 22 22 1235
Q ss_pred HHHHHHHHHHHHHhh
Q 038217 215 CRAEIEFLEEQIVNH 229 (715)
Q Consensus 215 ~~~E~~~l~~~~~~~ 229 (715)
++.|++.+++++++.
T Consensus 273 ~K~elEkiREQVQNI 287 (288)
T PRK11820 273 LKVLIEQMREQVQNI 287 (288)
T ss_pred HHHHHHHHHHHHhcC
Confidence 688888888887653
No 469
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=8.2e+02 Score=27.24 Aligned_cols=21 Identities=29% Similarity=0.158 Sum_probs=16.1
Q ss_pred ccCCchhHHHHHHHHHhhhhh
Q 038217 168 LHIDKNDELLRLRLFSFLDEF 188 (715)
Q Consensus 168 ~~~d~~d~~l~~~l~~~l~~~ 188 (715)
...|..|+++.+.+..+..+.
T Consensus 366 ~~~d~~de~lEkEL~~L~~D~ 386 (439)
T KOG2911|consen 366 NNIDFEDEDLEKELEDLEADE 386 (439)
T ss_pred CCCccchHHHHHHHHHHHhcc
Confidence 345888999999998888643
No 470
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.82 E-value=5.4e+02 Score=26.90 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.0
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh--hhhhhcCcHHHHHHHH
Q 038217 433 AIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS--RIMDEEGCLGSIVKVL 483 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~--~I~~~~g~i~~Lv~lL 483 (715)
.+|+++.++++.++..+..++.+|..+...-.... .+. ..|..+.+-+.|
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~-~tGl~~v~~~al 171 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR-RTGLFSVFEDAL 171 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HcChHHHHHHHH
Confidence 58999999999999999999999999876554333 233 455554444443
No 471
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=23.49 E-value=2.3e+02 Score=24.37 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 038217 149 SEDVREQIDLMQRQARNAK 167 (715)
Q Consensus 149 s~ev~e~v~~~~~q~~~~~ 167 (715)
|.+|++||+.++.|++.+.
T Consensus 5 ~s~I~~eI~kLqe~lk~~e 23 (98)
T PRK13848 5 SSKIREEIAKLQEQLKQAE 23 (98)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888554
No 472
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.42 E-value=2.9e+02 Score=27.00 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
++.++++..+.+...+..|+.++..+-..+ +.--.-.+|.|+.|..+.++..+.+|..+++.+.+-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qG-------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQG-------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 466677777778889999999887776654 111011588999999999999999999988888653
No 473
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=23.30 E-value=2.8e+02 Score=22.81 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHh-ccccchhH
Q 038217 54 FQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDY-CGQSSKLW 115 (715)
Q Consensus 54 ~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~-C~~~Skly 115 (715)
..+++-..|++.+..+.++++.|...+. +++.-..-+......-+++..|+.. +++|++.|
T Consensus 3 ~L~~~r~~Lv~~l~~~~~ild~L~~~~v-lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~ 64 (85)
T PF00619_consen 3 LLRKNRQELVEDLDDLDDILDHLLSRGV-LTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAF 64 (85)
T ss_dssp HHHHTHHHHHHHSSHHHHHHHHHHHTTS-SSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHCCC-CCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHH
Confidence 4578888999999889999999997776 7776666666656677788888877 33665553
No 474
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=22.71 E-value=48 Score=31.89 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=16.6
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.+.||+|+-+..+. .+..||.|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 67899885554431 25578888864
No 475
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.56 E-value=5e+02 Score=27.12 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.|..|+.-+..++.-.|-.++..+..+- ..-+||.|.+.|.. .++-++..|+.+|..++
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa-------- 248 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA-------- 248 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--------
Confidence 4555555555444444555554443332 12357888876654 56778888888886554
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLF 500 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 500 (715)
...+++.|.+.+... ..-+++.+.-+|-
T Consensus 249 ---~e~~~~vL~e~~~D~-~~vv~esc~vald 276 (289)
T KOG0567|consen 249 ---DEDCVEVLKEYLGDE-ERVVRESCEVALD 276 (289)
T ss_pred ---CHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 455666666666654 4445555544443
No 476
>PRK06424 transcription factor; Provisional
Probab=22.36 E-value=3.1e+02 Score=25.76 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH---Hhhhhhcc-CCCCChHHHHHHhhhcCCCC
Q 038217 147 ELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLF---SFLDEFEH-GRVPNHVDLRSFFVEGLGIK 210 (715)
Q Consensus 147 ~~s~ev~e~v~~~~~q~~~~~~~~d~~d~~l~~~l~---~~l~~~~~-~~~~d~~~l~~~~~~~l~l~ 210 (715)
++.++..+.++.+...++.+.....-..++|.+.+- ..+.+.++ ...|+.+.+..++.. ||++
T Consensus 73 d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~-Lgvs 139 (144)
T PRK06424 73 KASDEDLDIVEDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKI-LGIT 139 (144)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHH-hCCC
Confidence 445565666677777777777666777788888773 45555554 456888999999999 8875
No 477
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.25 E-value=8.2e+02 Score=30.67 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-hcCcHHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD-EEGCLGSI 479 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~~g~i~~L 479 (715)
.-.++.|.-++.+|.-+.+.-|++ +.+...+..+-..|+..+.+++..++.+|..|...++.+..+.. ....=..+
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~---Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEI---FLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHH---HhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 346788888888888888765543 56667788888888889999999999999999887654332221 34555666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 480 VKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
|++.....+..++..+..++..+....- .. ..-|..+..++-++++++...|...|+.=...
T Consensus 375 VeMadrd~~~~Vrav~L~~~~~~~~~g~-----L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~ 436 (1048)
T KOG2011|consen 375 VEMADRDRNVSVRAVGLVLCLLLSSSGL-----LS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKLFE 436 (1048)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHhcccc-----cC-hhHHHHHHHHHhccCcchHHHHHHHHHHHhhc
Confidence 7777443355666666655555543211 11 23355667777788888888888777654443
No 478
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.00 E-value=87 Score=33.73 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhChhhHHHHHHcCChHHHHH--hhccCCHHHHHHHHHHHhhhhcCc-hhhhhhh
Q 038217 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRN--LLSTHNPVAQENSVTAMLNLSIYD-KNKSRIM 470 (715)
Q Consensus 410 A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~--lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~ 470 (715)
..+-|.+++..++++...+.+.||++.++. -.++.||-+++-.+-++.+|..++ +|++.|.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 567888999999999999999999998876 345678999999999999998876 7777665
No 479
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.00 E-value=4.3e+02 Score=27.73 Aligned_cols=95 Identities=17% Similarity=0.334 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHhhhhhccCCCCChHHHH-HH
Q 038217 124 SGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLR-SF 202 (715)
Q Consensus 124 ~~~f~~~~~~l~~~L~~lp~~~l~~s~ev~e~v~~~~~q~~~~~~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~~l~-~~ 202 (715)
..|.+.....|.+.++ ++.-++..+|+++-++-.++...|+-+-..+..++++|..- ....++++ ++
T Consensus 229 ~~QM~s~~~nIe~~~~-----------~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a-~~~lse~~e~y 296 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVG-----------NVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRA-TDTLSELREKY 296 (384)
T ss_pred HHHHHHHHHHHHHhhc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444455555555544 34456777888888777888888888888888888876531 11223333 22
Q ss_pred -hhhcCCCCCH----HHHHHHHHHHHHHHHhhcC
Q 038217 203 -FVEGLGIKDA----KTCRAEIEFLEEQIVNHEG 231 (715)
Q Consensus 203 -~~~~l~l~~~----~~~~~E~~~l~~~~~~~~~ 231 (715)
+.. .|.++. .+.-.|++.+|.++++++.
T Consensus 297 ~q~~-~gv~~rT~~L~eVm~e~E~~KqemEe~G~ 329 (384)
T KOG0972|consen 297 KQAS-VGVSSRTETLDEVMDEIEQLKQEMEEQGA 329 (384)
T ss_pred HHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223 555533 3445677888888887653
No 480
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.90 E-value=52 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=12.1
Q ss_pred CCCCCCCCccccccC
Q 038217 325 GHRTCPKTGQMLVHD 339 (715)
Q Consensus 325 ~~~~CP~c~~~l~~~ 339 (715)
.++.||.||.+++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 478999999888754
No 481
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=21.61 E-value=9.9e+02 Score=25.43 Aligned_cols=92 Identities=14% Similarity=-0.031 Sum_probs=65.1
Q ss_pred hHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHHHHHHHhccC-CCCccc
Q 038217 69 FLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVF-PADDIE 147 (715)
Q Consensus 69 l~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~l-p~~~l~ 147 (715)
+..+++++-| .-...++.++..++....-+-.......+.-+..-+....+|+.....+.+++..+ -.....
T Consensus 141 ~~~lld~i~d-------~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~ 213 (322)
T COG0598 141 LYALLDAIVD-------NYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDW 213 (322)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccc
Confidence 3345555553 34456677777777777666666655677788888888999999999988888887 332236
Q ss_pred chHHHHHHHHHHHHHHHhhh
Q 038217 148 LSEDVREQIDLMQRQARNAK 167 (715)
Q Consensus 148 ~s~ev~e~v~~~~~q~~~~~ 167 (715)
++++.+++.+.+..+..++-
T Consensus 214 ~~~~~~~~l~dv~~~~~~~~ 233 (322)
T COG0598 214 LSEEDREYLRDVLDHLTQLI 233 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 78888888888877766544
No 482
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=53 Score=27.42 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.2
Q ss_pred ccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 310 GQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 310 ghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.||.|+.|=.+-|.-+..+|..|+.|-.
T Consensus 15 shtlC~RCG~~syH~QKstC~~CGYpaa 42 (92)
T KOG3475|consen 15 SHTLCRRCGRRSYHIQKSTCSSCGYPAA 42 (92)
T ss_pred chHHHHHhCchhhhhhcccccccCCcch
Confidence 4899999999988877899999998764
No 483
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=21.17 E-value=16 Score=30.49 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=29.5
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|.||......| |..||..|-.+ ...|-.|++.+..
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~n 91 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKILN 91 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhhc
Confidence 35799999998887 76799999865 4578888876543
No 484
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=20.79 E-value=1e+03 Score=28.18 Aligned_cols=71 Identities=4% Similarity=-0.007 Sum_probs=48.8
Q ss_pred HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 555 IEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 555 v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
...+.+|.|+++++ |..++..-+.-+.... +.--..+++... .|.+..-+.+.++..|+..+..+..|+.-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I-~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQI-FPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchh-HHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 55678899999986 5555544443333332 233355666677 78888888888999999999888777653
No 485
>PF12773 DZR: Double zinc ribbon
Probab=20.71 E-value=58 Score=24.17 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=7.0
Q ss_pred CCCcCccCccccc
Q 038217 290 KDFCCPIMLDLMR 302 (715)
Q Consensus 290 ~~~~CpIc~~lm~ 302 (715)
+...||-|+..+.
T Consensus 11 ~~~fC~~CG~~l~ 23 (50)
T PF12773_consen 11 DAKFCPHCGTPLP 23 (50)
T ss_pred cccCChhhcCChh
Confidence 3455565555554
No 486
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.69 E-value=6.9e+02 Score=25.79 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHhccCc------hhHHHHhcccCcHHHHHHHhhcCChhHHHH-----HHHHHHHhhcCCccHHHHHHhCChHHHHH
Q 038217 497 ATLFSLSAVH------EYKKKIADESGAVEALATLLRLGTPRGKKD-----AVTALFNLSTHTDNCVRMIEAGAVTALVG 565 (715)
Q Consensus 497 ~~L~~Ls~~~------~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~-----A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~ 565 (715)
.+|..|+..+ ..+..+....-.+|.|+++|.....+..+. ....++.+.. -..+.+..+.+++++
T Consensus 5 ~il~~l~~~~~~~P~~al~~A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~L----Laq~re~~A~~~li~ 80 (249)
T PF06685_consen 5 EILEQLSYNDGEFPREALEAAIEQREEITPELLKILEDAIERANELLDDEEYNLHFYALYL----LAQFREERALPPLIR 80 (249)
T ss_pred HHHHHHHhccccCcHHHHHHHHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHH----HHHHhhhhhHHHHHH
Q ss_pred hhC-ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 038217 566 ALG-HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKENAVAALLELCRSGGASATERVLK 639 (715)
Q Consensus 566 lL~-~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 639 (715)
+++ +++..+.-.+ --++..-...-+.+-.|. +..|.+++.+ -..-.|-.|+++|..+...+ ...++.+++
T Consensus 81 l~~~~~~~~~~l~G--D~~tE~l~~ilasv~~G~-~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~-~~~Re~vi~ 153 (249)
T PF06685_consen 81 LFSQDDDFLEDLFG--DFITEDLPRILASVGDGD-IEPLKELIEDPDADEYVRMAAISALAFLVHEG-PISREEVIQ 153 (249)
T ss_pred HHcCCcchHHHHHc--chhHhHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC-CCCHHHHHH
No 487
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=20.59 E-value=64 Score=34.23 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCcCccCcccccC----ceeCCCcc-----HhhHHHHHHHHHh-CCCCCCCCccccccC
Q 038217 291 DFCCPIMLDLMRD----PVIISTGQ-----TYDRRSIARWMEE-GHRTCPKTGQMLVHD 339 (715)
Q Consensus 291 ~~~CpIc~~lm~d----Pv~~~cgh-----tfcr~cI~~w~~~-~~~~CP~c~~~l~~~ 339 (715)
+..|-||...... |...+|.. ...|.|++.|+.. +..+|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5899999986543 55666642 3479999999984 678999998766443
No 488
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.36 E-value=2e+03 Score=28.61 Aligned_cols=129 Identities=11% Similarity=0.113 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc--cHHHHHHhCChHHHHHhhC
Q 038217 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD--NCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 491 ~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~aG~v~~Lv~lL~ 568 (715)
...+|..+.+.|+...+.-... .+.+..++..|.+.....+-.|+++|.++..-+. -....+..|+...+.. +
T Consensus 793 d~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D--s 867 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND--S 867 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc--c
Confidence 3456666667776655443333 4677778888887778899999999999987554 2233445543333221 1
Q ss_pred ChhHHHHHHHHHHHHh-CCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 038217 569 HEGVAEEAAGALALIV-RQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG 630 (715)
Q Consensus 569 ~~~~~~~al~~L~~La-~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 630 (715)
...+++.|+..+.... ..++...+..+ .+.+=+.+.+-.+|.+++.+|..+|...+
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 2478899998887543 34443333221 23332333566788999999999998764
No 489
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.18 E-value=60 Score=32.94 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=26.4
Q ss_pred cCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 293 CCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.|.+|...+..+ .+..|..|...|-.. ...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 699999876322 224688887776333 358999997653
No 490
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.11 E-value=2.1e+02 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=45.9
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
...++++++.|..++.+++.+.+||.........-..++..+... ..+.-+.++.++..+-.
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 347899999999999999999988665553666777778877665 55555666666665554
Done!