Query 038217
Match_columns 715
No_of_seqs 456 out of 2834
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:55:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.8E-29 6E-34 272.2 23.9 265 405-675 47-338 (354)
2 3l6x_A Catenin delta-1; cateni 100.0 1.7E-28 5.9E-33 278.3 27.7 280 390-673 48-386 (584)
3 1xm9_A Plakophilin 1; armadill 100.0 9.3E-29 3.2E-33 276.9 24.9 279 391-674 3-363 (457)
4 3nmz_A APC variant protein; pr 100.0 3.4E-28 1.2E-32 269.9 22.9 261 407-673 165-452 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 9E-27 3.1E-31 260.8 27.5 281 388-675 42-453 (457)
6 3nmw_A APC variant protein; AR 100.0 2.3E-27 7.8E-32 255.7 21.3 243 389-634 72-341 (354)
7 3l6x_A Catenin delta-1; cateni 100.0 2.1E-26 7.3E-31 261.2 29.8 281 389-675 89-480 (584)
8 3nmz_A APC variant protein; pr 99.9 3.3E-26 1.1E-30 254.0 21.7 243 389-633 188-456 (458)
9 3ul1_B Importin subunit alpha- 99.9 9E-25 3.1E-29 248.0 32.2 278 389-670 99-429 (510)
10 3now_A UNC-45 protein, SD10334 99.9 3.6E-25 1.2E-29 259.1 28.1 281 387-671 418-737 (810)
11 3now_A UNC-45 protein, SD10334 99.9 3.5E-25 1.2E-29 259.1 27.3 282 389-675 494-786 (810)
12 3tpo_A Importin subunit alpha- 99.9 1.1E-24 3.6E-29 248.6 28.7 279 389-671 118-406 (529)
13 3tpo_A Importin subunit alpha- 99.9 7.8E-24 2.7E-28 241.4 32.2 281 388-671 160-449 (529)
14 4hxt_A De novo protein OR329; 99.9 5.7E-24 1.9E-28 216.8 26.0 236 391-630 3-244 (252)
15 3ul1_B Importin subunit alpha- 99.9 8E-24 2.7E-28 240.2 27.2 275 391-671 58-345 (510)
16 4db8_A Armadillo-repeat protei 99.9 3.7E-24 1.3E-28 219.1 21.4 233 391-627 13-251 (252)
17 4b8j_A Importin subunit alpha- 99.9 4.6E-23 1.6E-27 234.6 31.3 279 389-672 116-401 (528)
18 4b8j_A Importin subunit alpha- 99.9 1.6E-22 5.3E-27 230.2 32.0 276 390-671 74-358 (528)
19 4hxt_A De novo protein OR329; 99.9 1.1E-22 3.8E-27 207.2 26.2 237 432-674 2-244 (252)
20 3tt9_A Plakophilin-2; cell adh 99.9 8.5E-24 2.9E-28 213.4 16.3 195 389-586 7-230 (233)
21 1wa5_B Importin alpha subunit; 99.9 5.5E-22 1.9E-26 225.9 30.7 278 389-672 129-413 (530)
22 3tt9_A Plakophilin-2; cell adh 99.9 2.4E-23 8.1E-28 210.1 17.0 192 433-628 9-230 (233)
23 2jdq_A Importin alpha-1 subuni 99.9 1.5E-21 5.2E-26 216.4 31.6 276 390-671 64-347 (450)
24 1wa5_B Importin alpha subunit; 99.9 2.5E-21 8.5E-26 220.5 32.9 279 389-672 172-458 (530)
25 2jdq_A Importin alpha-1 subuni 99.9 3.1E-21 1E-25 213.9 32.4 279 389-673 106-392 (450)
26 4db8_A Armadillo-repeat protei 99.9 3E-22 1E-26 204.8 22.0 233 432-670 12-250 (252)
27 1jdh_A Beta-catenin; beta-cate 99.9 2.4E-21 8.3E-26 219.5 27.9 274 389-671 58-339 (529)
28 1jdh_A Beta-catenin; beta-cate 99.9 1.3E-21 4.5E-26 221.8 22.9 273 389-671 16-295 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 4.4E-21 1.5E-25 223.8 27.7 274 389-671 55-336 (644)
30 2z6h_A Catenin beta-1, beta-ca 99.9 2.4E-21 8.3E-26 226.0 24.3 274 389-672 13-293 (644)
31 2z6g_A B-catenin; FULL-length, 99.9 2E-20 6.7E-25 222.7 25.4 270 391-672 116-390 (780)
32 4db6_A Armadillo repeat protei 99.9 3.6E-20 1.2E-24 184.1 21.4 193 390-585 12-209 (210)
33 4db6_A Armadillo repeat protei 99.8 3.8E-20 1.3E-24 183.9 20.7 194 430-627 10-209 (210)
34 3opb_A SWI5-dependent HO expre 99.8 3.6E-20 1.2E-24 213.0 23.3 286 383-672 369-729 (778)
35 2z6g_A B-catenin; FULL-length, 99.8 3.8E-20 1.3E-24 220.2 24.0 273 389-671 149-428 (780)
36 2f42_A STIP1 homology and U-bo 99.8 5.6E-20 1.9E-24 176.0 7.9 77 286-362 101-177 (179)
37 3opb_A SWI5-dependent HO expre 99.8 5.4E-18 1.8E-22 195.0 24.6 274 391-671 335-683 (778)
38 1xqr_A HSPBP1 protein; armadil 99.8 3.7E-17 1.3E-21 171.5 24.2 180 404-586 54-239 (296)
39 2kr4_A Ubiquitin conjugation f 99.8 3.7E-19 1.3E-23 150.8 6.0 75 284-359 7-81 (85)
40 3htk_C E3 SUMO-protein ligase 99.8 1.4E-18 4.7E-23 173.6 10.3 215 122-357 29-251 (267)
41 1wgm_A Ubiquitin conjugation f 99.7 9.1E-19 3.1E-23 152.2 6.9 76 285-361 16-92 (98)
42 2kre_A Ubiquitin conjugation f 99.7 6.5E-19 2.2E-23 153.7 6.0 75 285-360 23-97 (100)
43 1xqr_A HSPBP1 protein; armadil 99.7 2.4E-16 8.1E-21 165.4 23.3 221 445-670 53-286 (296)
44 2c2l_A CHIP, carboxy terminus 99.7 1.7E-17 5.8E-22 173.1 13.8 77 286-362 203-279 (281)
45 1t1h_A Gspef-atpub14, armadill 99.7 4.2E-18 1.4E-22 142.1 5.8 75 286-360 3-77 (78)
46 2yu4_A E3 SUMO-protein ligase 99.6 1.9E-16 6.5E-21 136.8 5.1 74 287-360 3-85 (94)
47 3ztg_A E3 ubiquitin-protein li 99.5 8.1E-15 2.8E-19 126.2 7.5 76 286-361 8-86 (92)
48 3grl_A General vesicular trans 99.5 5.9E-12 2E-16 141.6 25.5 273 390-669 21-340 (651)
49 3fl2_A E3 ubiquitin-protein li 99.4 4.8E-14 1.7E-18 128.4 4.5 71 287-357 48-119 (124)
50 1z6u_A NP95-like ring finger p 99.4 1.5E-13 5.3E-18 129.0 4.4 70 287-356 74-144 (150)
51 3grl_A General vesicular trans 99.4 1.2E-10 4.3E-15 130.9 28.4 278 389-669 59-392 (651)
52 2bay_A PRE-mRNA splicing facto 99.4 1.3E-13 4.5E-18 108.4 2.6 54 291-345 3-57 (61)
53 2y43_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 117.4 3.5 72 287-359 18-90 (99)
54 3lrq_A E3 ubiquitin-protein li 99.3 3.9E-13 1.3E-17 117.4 2.8 72 287-358 18-90 (100)
55 3m62_A Ubiquitin conjugation f 99.3 5.5E-13 1.9E-17 155.1 4.4 75 285-360 885-960 (968)
56 2ckl_A Polycomb group ring fin 99.3 1.2E-12 4E-17 116.1 3.6 68 287-355 11-83 (108)
57 3hct_A TNF receptor-associated 99.3 1.7E-12 5.8E-17 117.0 4.0 70 286-355 13-82 (118)
58 2ecw_A Tripartite motif-contai 99.3 5.9E-13 2E-17 112.4 0.9 65 286-350 14-83 (85)
59 2csy_A Zinc finger protein 183 99.3 1.9E-12 6.3E-17 108.5 3.9 63 286-350 10-72 (81)
60 2egp_A Tripartite motif-contai 99.3 1.2E-13 4.2E-18 115.1 -3.4 65 286-350 7-77 (79)
61 3l11_A E3 ubiquitin-protein li 99.2 9.5E-13 3.3E-17 118.1 1.1 70 286-355 10-86 (115)
62 2ecy_A TNF receptor-associated 99.2 4E-12 1.4E-16 102.0 4.5 56 286-341 10-65 (66)
63 2djb_A Polycomb group ring fin 99.2 6.4E-12 2.2E-16 102.7 5.6 58 286-344 10-68 (72)
64 2ckl_B Ubiquitin ligase protei 99.2 2.2E-12 7.6E-17 123.4 3.2 71 286-356 49-121 (165)
65 2yur_A Retinoblastoma-binding 99.2 4.9E-12 1.7E-16 103.9 4.6 60 285-344 9-71 (74)
66 2ecv_A Tripartite motif-contai 99.2 9.5E-13 3.3E-17 111.1 0.3 65 286-350 14-83 (85)
67 1jm7_B BARD1, BRCA1-associated 99.2 1.5E-12 5.2E-17 117.2 1.6 69 287-358 18-87 (117)
68 4ayc_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 117.5 3.1 64 289-355 51-114 (138)
69 1jm7_A BRCA1, breast cancer ty 99.2 6.9E-12 2.4E-16 111.8 2.5 68 288-355 18-87 (112)
70 2ysl_A Tripartite motif-contai 99.2 1.8E-11 6E-16 100.2 4.4 56 286-341 15-72 (73)
71 1g25_A CDK-activating kinase a 99.1 1.7E-11 5.9E-16 97.9 3.8 55 290-344 2-61 (65)
72 2ysj_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 95.4 4.9 47 286-332 15-63 (63)
73 3knv_A TNF receptor-associated 99.1 7.7E-12 2.6E-16 116.1 1.1 68 286-353 26-102 (141)
74 3hcs_A TNF receptor-associated 99.1 2.3E-11 7.9E-16 116.9 4.0 69 286-354 13-81 (170)
75 1rmd_A RAG1; V(D)J recombinati 99.1 2E-11 6.9E-16 109.6 3.2 68 287-354 19-87 (116)
76 3ng2_A RNF4, snurf, ring finge 99.1 2.8E-11 9.6E-16 98.4 3.3 59 286-345 5-70 (71)
77 3ltm_A Alpha-REP4; protein eng 99.1 6E-09 2.1E-13 102.9 20.1 187 389-630 18-206 (211)
78 3ltj_A Alpharep-4; protein eng 99.0 1.5E-08 5.3E-13 99.1 20.7 182 390-626 14-197 (201)
79 2ct2_A Tripartite motif protei 99.0 2E-10 6.8E-15 97.5 5.7 54 286-339 10-69 (88)
80 2ecj_A Tripartite motif-contai 99.0 1.3E-10 4.6E-15 90.3 3.8 47 286-332 10-58 (58)
81 2d8t_A Dactylidin, ring finger 99.0 5.4E-11 1.8E-15 96.8 1.3 53 286-339 10-62 (71)
82 1oyz_A Hypothetical protein YI 99.0 1.8E-08 6.2E-13 104.1 20.2 225 388-669 21-248 (280)
83 2xeu_A Ring finger protein 4; 99.0 8.5E-11 2.9E-15 93.4 1.5 54 290-344 2-62 (64)
84 2ea6_A Ring finger protein 4; 99.0 1.9E-10 6.5E-15 92.8 3.6 52 286-338 10-68 (69)
85 3ltm_A Alpha-REP4; protein eng 99.0 3E-08 1E-12 97.8 19.9 185 431-672 18-204 (211)
86 3ltj_A Alpharep-4; protein eng 98.9 3.7E-08 1.3E-12 96.4 19.4 183 431-670 13-197 (201)
87 1e4u_A Transcriptional repress 98.9 4.9E-10 1.7E-14 92.6 4.5 56 286-341 6-65 (78)
88 2ect_A Ring finger protein 126 98.9 5.6E-10 1.9E-14 92.5 3.7 58 286-344 10-70 (78)
89 1chc_A Equine herpes virus-1 r 98.8 2.1E-09 7E-14 86.5 3.6 48 290-338 4-52 (68)
90 4fdd_A Transportin-1; heat rep 98.8 5.3E-08 1.8E-12 116.8 17.6 271 391-672 129-430 (852)
91 2ep4_A Ring finger protein 24; 98.8 3.8E-09 1.3E-13 86.5 5.1 52 286-338 10-64 (74)
92 1oyz_A Hypothetical protein YI 98.8 2.8E-07 9.7E-12 95.0 20.0 221 389-666 53-277 (280)
93 2ecn_A Ring finger protein 141 98.8 1.1E-09 3.8E-14 88.6 1.2 53 286-340 10-62 (70)
94 2ecm_A Ring finger and CHY zin 98.8 3.1E-09 1E-13 81.6 3.3 47 290-337 4-54 (55)
95 2kiz_A E3 ubiquitin-protein li 98.8 5.8E-09 2E-13 84.1 5.0 52 287-339 10-64 (69)
96 1iym_A EL5; ring-H2 finger, ub 98.8 2.6E-09 9E-14 82.0 2.7 49 288-337 2-54 (55)
97 4ap4_A E3 ubiquitin ligase RNF 98.7 1.9E-09 6.7E-14 98.7 1.9 55 289-344 5-66 (133)
98 1bor_A Transcription factor PM 98.7 2.4E-09 8.2E-14 82.6 1.7 46 289-338 4-49 (56)
99 2l0b_A E3 ubiquitin-protein li 98.7 4.4E-09 1.5E-13 89.8 3.4 51 287-338 36-89 (91)
100 4fdd_A Transportin-1; heat rep 98.7 1.3E-07 4.3E-12 113.5 16.5 271 390-672 174-472 (852)
101 1x4j_A Ring finger protein 38; 98.7 5.1E-09 1.7E-13 86.0 2.9 50 288-338 20-72 (75)
102 4gmo_A Putative uncharacterize 98.7 6.5E-08 2.2E-12 113.1 12.7 192 432-627 34-258 (684)
103 1v87_A Deltex protein 2; ring- 98.6 1.5E-08 5.2E-13 90.3 4.4 50 289-338 23-94 (114)
104 1ibr_B P95, importin beta-1 su 98.6 3.4E-07 1.2E-11 100.7 15.8 272 391-674 129-440 (462)
105 4gmo_A Putative uncharacterize 98.6 4.5E-07 1.6E-11 106.0 17.2 192 473-669 33-257 (684)
106 1b3u_A Protein (protein phosph 98.6 1.8E-06 6.2E-11 98.1 21.6 262 391-669 88-351 (588)
107 1b3u_A Protein (protein phosph 98.6 1.8E-06 6.2E-11 98.1 21.0 262 390-669 164-429 (588)
108 2vgl_B AP-2 complex subunit be 98.6 2.9E-06 1E-10 97.4 21.4 265 389-671 120-420 (591)
109 4ic3_A E3 ubiquitin-protein li 98.5 1E-08 3.5E-13 83.9 0.5 46 288-338 21-67 (74)
110 2y1n_A E3 ubiquitin-protein li 98.5 2.6E-08 9E-13 106.0 3.6 52 289-340 330-381 (389)
111 4ap4_A E3 ubiquitin ligase RNF 98.5 1.9E-08 6.5E-13 92.0 1.1 56 288-344 69-131 (133)
112 2ecl_A Ring-box protein 2; RNF 98.4 7E-08 2.4E-12 80.4 1.9 49 290-339 14-77 (81)
113 2ecg_A Baculoviral IAP repeat- 98.4 7.5E-08 2.6E-12 78.9 1.6 46 288-338 22-68 (75)
114 1wim_A KIAA0161 protein; ring 98.4 6.8E-08 2.3E-12 82.9 0.9 66 290-356 4-83 (94)
115 2vje_A E3 ubiquitin-protein li 98.3 2.1E-07 7.2E-12 73.7 2.9 48 289-337 6-56 (64)
116 2vgl_B AP-2 complex subunit be 98.3 1E-05 3.6E-10 92.8 17.9 258 391-672 50-312 (591)
117 3b2a_A TON_1937, putative unch 98.3 7.2E-05 2.5E-09 73.3 19.7 217 388-621 31-255 (265)
118 2vje_B MDM4 protein; proto-onc 98.3 3.4E-07 1.2E-11 72.2 2.8 47 291-338 7-56 (63)
119 2bpt_A Importin beta-1 subunit 98.3 1.6E-05 5.6E-10 94.7 18.8 268 390-671 369-668 (861)
120 3dpl_R Ring-box protein 1; ubi 98.2 5.1E-07 1.8E-11 79.0 3.8 46 291-337 37-100 (106)
121 1qgr_A Protein (importin beta 98.2 2.7E-05 9.2E-10 93.0 18.4 272 390-671 366-679 (876)
122 1qgr_A Protein (importin beta 98.1 0.00013 4.3E-09 87.1 23.1 270 391-672 129-438 (876)
123 1w63_A Adapter-related protein 98.1 4.6E-05 1.6E-09 87.9 18.2 144 389-547 106-264 (618)
124 1w63_A Adapter-related protein 98.1 0.00011 3.7E-09 84.8 21.3 250 389-669 141-412 (618)
125 2yho_A E3 ubiquitin-protein li 98.1 3.7E-07 1.3E-11 75.5 -0.0 47 288-339 15-62 (79)
126 2bpt_A Importin beta-1 subunit 98.1 0.00013 4.6E-09 86.7 21.0 270 391-672 135-441 (861)
127 1ibr_B P95, importin beta-1 su 98.0 0.00011 3.7E-09 80.6 18.3 234 390-630 172-440 (462)
128 3t6p_A Baculoviral IAP repeat- 98.0 6.3E-07 2.2E-11 95.0 0.0 47 287-338 291-338 (345)
129 1u6g_C TIP120 protein, CAND1; 98.0 1.9E-05 6.5E-10 98.4 11.7 267 390-672 6-285 (1230)
130 2ea5_A Cell growth regulator w 98.0 3.8E-06 1.3E-10 67.2 3.5 46 288-338 12-58 (68)
131 3dad_A FH1/FH2 domain-containi 98.0 0.00018 6E-09 74.9 16.5 155 391-546 119-286 (339)
132 4a0k_B E3 ubiquitin-protein li 97.9 1.5E-06 5.1E-11 77.1 0.2 46 291-337 48-111 (117)
133 2d8s_A Cellular modulator of i 97.9 7.7E-06 2.6E-10 67.6 4.4 53 287-339 11-71 (80)
134 3b2a_A TON_1937, putative unch 97.8 0.00099 3.4E-08 65.4 18.5 222 432-671 33-261 (265)
135 2qk2_A LP04448P; mini spindles 97.8 0.00015 5.1E-09 72.9 13.3 183 435-631 18-209 (242)
136 2qk2_A LP04448P; mini spindles 97.8 0.00011 3.6E-09 74.0 11.8 179 394-585 19-205 (242)
137 1ho8_A Vacuolar ATP synthase s 97.7 0.00097 3.3E-08 72.7 18.0 229 394-627 171-476 (480)
138 1te4_A Conserved protein MTH18 97.6 1.2E-05 3.9E-10 73.1 0.9 118 391-543 13-130 (131)
139 2vgl_A Adaptor protein complex 97.6 0.0041 1.4E-07 71.5 22.4 107 389-506 110-218 (621)
140 1u6g_C TIP120 protein, CAND1; 97.6 0.00022 7.7E-09 88.7 12.2 227 390-631 48-288 (1230)
141 2vgl_A Adaptor protein complex 97.6 0.0069 2.4E-07 69.6 23.5 250 390-667 146-429 (621)
142 2iw3_A Elongation factor 3A; a 97.5 0.0055 1.9E-07 73.2 22.8 267 390-674 54-327 (986)
143 3dad_A FH1/FH2 domain-containi 97.4 0.0033 1.1E-07 65.3 16.3 148 521-669 122-284 (339)
144 1te4_A Conserved protein MTH18 97.4 4.2E-05 1.4E-09 69.3 1.3 118 431-582 11-130 (131)
145 2qk1_A Protein STU2; STU2P, XM 97.3 0.00096 3.3E-08 67.6 11.0 187 395-585 21-220 (249)
146 2ct0_A Non-SMC element 1 homol 97.2 0.00022 7.4E-09 57.7 3.7 48 291-338 15-64 (74)
147 2qk1_A Protein STU2; STU2P, XM 97.2 0.0029 9.8E-08 64.0 12.7 190 479-672 21-221 (249)
148 4ady_A RPN2, 26S proteasome re 97.1 0.028 9.4E-07 66.5 22.2 192 433-664 473-669 (963)
149 1ho8_A Vacuolar ATP synthase s 97.1 0.09 3.1E-06 57.3 24.3 221 445-668 181-473 (480)
150 2db0_A 253AA long hypothetical 97.0 0.26 8.8E-06 46.6 23.5 209 432-668 32-243 (253)
151 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00063 2.1E-08 52.7 4.2 48 290-337 5-58 (60)
152 3vk6_A E3 ubiquitin-protein li 96.8 0.00069 2.4E-08 57.0 3.1 46 293-338 3-49 (101)
153 3k1l_B Fancl; UBC, ring, RWD, 96.7 0.00076 2.6E-08 69.7 3.6 48 291-338 308-373 (381)
154 3tjz_B Coatomer subunit gamma; 96.5 0.019 6.3E-07 61.0 12.9 267 341-667 78-350 (355)
155 4ffb_C Protein STU2; tubulin f 96.3 0.092 3.1E-06 53.5 16.1 182 395-585 14-212 (278)
156 4ady_A RPN2, 26S proteasome re 96.0 1.2 4.1E-05 52.8 25.6 236 391-670 473-718 (963)
157 2fv2_A RCD1 required for cell 95.8 0.33 1.1E-05 48.3 16.5 148 406-556 72-234 (268)
158 3tjz_B Coatomer subunit gamma; 95.3 0.94 3.2E-05 47.8 19.4 137 433-587 69-207 (355)
159 2iw3_A Elongation factor 3A; a 94.6 1.2 4E-05 53.4 19.6 179 389-583 132-322 (986)
160 2fv2_A RCD1 required for cell 94.5 0.93 3.2E-05 45.1 15.3 201 391-595 4-234 (268)
161 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.013 4.5E-07 50.2 1.6 34 290-323 2-38 (101)
162 3i2d_A E3 SUMO-protein ligase 94.2 0.032 1.1E-06 58.6 4.5 63 291-353 249-315 (371)
163 3oc3_A Helicase MOT1, MOT1; re 94.2 0.41 1.4E-05 52.9 13.0 257 391-682 175-451 (800)
164 3ebb_A Phospholipase A2-activa 94.0 0.65 2.2E-05 48.0 13.9 187 475-668 104-303 (304)
165 2of3_A ZYG-9; multifunctional 94.0 1.3 4.4E-05 44.8 15.6 178 393-584 49-235 (266)
166 4fo9_A E3 SUMO-protein ligase 93.5 0.053 1.8E-06 56.8 4.4 64 290-353 214-281 (360)
167 3nw0_A Non-structural maintena 92.9 0.065 2.2E-06 53.5 3.9 49 291-339 180-230 (238)
168 1upk_A MO25 protein; transfera 92.5 3.2 0.00011 43.0 16.0 197 389-587 77-285 (341)
169 1wa5_C Importin alpha RE-expor 92.4 2.4 8.2E-05 50.9 17.6 254 405-670 376-669 (960)
170 2db0_A 253AA long hypothetical 92.2 7.9 0.00027 36.6 22.9 214 388-628 30-247 (253)
171 2f31_A Diaphanous protein homo 92.1 2.9 0.0001 41.2 14.9 153 395-549 5-183 (233)
172 3eg5_B Protein diaphanous homo 91.8 4.5 0.00015 43.1 16.9 171 394-568 70-274 (383)
173 4ffb_C Protein STU2; tubulin f 91.6 2.4 8.1E-05 42.8 14.1 188 434-631 12-216 (278)
174 3ebb_A Phospholipase A2-activa 90.6 2.4 8.2E-05 43.7 12.9 132 394-526 151-285 (304)
175 2of3_A ZYG-9; multifunctional 89.8 2.8 9.6E-05 42.2 12.3 184 436-637 50-246 (266)
176 3oc3_A Helicase MOT1, MOT1; re 88.2 1.3 4.5E-05 48.9 8.9 165 431-622 262-431 (800)
177 1wa5_C Importin alpha RE-expor 88.2 25 0.00086 41.9 21.4 216 401-626 416-669 (960)
178 2x1g_F Cadmus; transport prote 87.9 20 0.00069 42.7 20.4 175 488-671 477-663 (971)
179 2bnx_A Diaphanous protein homo 86.9 12 0.00042 39.7 15.7 172 394-568 8-212 (386)
180 1upk_A MO25 protein; transfera 86.6 32 0.0011 35.6 22.7 211 428-639 74-297 (341)
181 1weo_A Cellulose synthase, cat 86.6 0.68 2.3E-05 37.8 4.1 48 291-338 16-70 (93)
182 3u0r_A Apoptosis inhibitor 5; 86.3 5.2 0.00018 43.4 12.1 93 399-504 37-129 (507)
183 2f31_A Diaphanous protein homo 85.4 16 0.00056 35.7 14.7 141 473-614 42-215 (233)
184 3c2g_A SYS-1 protein; beta-cat 85.3 6 0.00021 41.0 11.4 109 455-567 265-376 (619)
185 2x1g_F Cadmus; transport prote 85.2 9 0.00031 45.8 15.3 211 402-628 476-723 (971)
186 1vdy_A Hypothetical protein (R 81.3 2.2 7.4E-05 38.6 5.7 76 600-675 51-134 (140)
187 3c2g_A SYS-1 protein; beta-cat 80.7 30 0.001 35.9 14.3 118 408-528 261-378 (619)
188 2x19_B Importin-13; nuclear tr 80.6 37 0.0013 40.3 18.1 155 400-567 459-621 (963)
189 2x19_B Importin-13; nuclear tr 79.3 28 0.00097 41.3 16.5 173 488-670 462-645 (963)
190 1lrv_A LRV, leucine-rich repea 78.7 1.8 6.2E-05 43.1 4.7 43 395-455 79-121 (244)
191 3eg5_B Protein diaphanous homo 77.7 45 0.0015 35.3 15.6 140 467-609 104-275 (383)
192 2bnx_A Diaphanous protein homo 76.3 47 0.0016 35.1 15.4 141 473-614 46-219 (386)
193 1mhq_A ADP-ribosylation factor 75.9 7.6 0.00026 35.3 7.7 73 389-461 37-116 (148)
194 3m1i_C Exportin-1; heat repeat 75.0 57 0.0019 39.3 17.6 215 391-628 17-264 (1049)
195 1lrv_A LRV, leucine-rich repea 75.0 7.2 0.00025 38.7 8.0 83 420-539 62-144 (244)
196 1x5b_A Signal transducing adap 74.0 8.1 0.00028 35.8 7.5 73 389-461 51-125 (163)
197 3u0r_A Apoptosis inhibitor 5; 71.5 31 0.0011 37.4 12.2 115 484-622 38-158 (507)
198 1juq_A ADP-ribosylation factor 70.6 8.7 0.0003 35.9 6.9 73 389-461 49-128 (171)
199 3ldz_A STAM-1, signal transduc 69.6 10 0.00035 34.1 6.9 73 389-461 41-114 (140)
200 3gjx_A Exportin-1; transport, 68.0 1.2E+02 0.0039 36.8 17.7 216 391-629 29-277 (1073)
201 3a6p_A Exportin-5; exportin-5, 67.7 95 0.0032 38.1 17.3 217 392-629 13-278 (1204)
202 4hat_C Exportin-1; heat repeat 67.4 44 0.0015 40.3 13.9 140 487-630 465-621 (1023)
203 3ldz_A STAM-1, signal transduc 66.9 15 0.0005 33.0 7.4 71 600-671 44-114 (140)
204 2cs3_A Protein C14ORF4, MY039 65.5 5.1 0.00018 31.9 3.4 45 287-331 11-63 (93)
205 2kkx_A Uncharacterized protein 63.2 4.7 0.00016 33.7 2.9 55 286-341 22-82 (102)
206 3g2s_A C-terminal fragment of 62.5 22 0.00075 32.3 7.7 73 389-461 47-126 (149)
207 4hat_C Exportin-1; heat repeat 62.0 38 0.0013 40.8 11.9 143 402-549 465-621 (1023)
208 1x5b_A Signal transducing adap 61.9 23 0.0008 32.6 7.9 71 600-671 54-125 (163)
209 1mhq_A ADP-ribosylation factor 61.5 17 0.00057 33.0 6.7 70 600-670 40-115 (148)
210 1juq_A ADP-ribosylation factor 57.9 19 0.00064 33.6 6.5 71 600-671 52-128 (171)
211 3ibv_A Exportin-T; karyopherin 57.2 3.1E+02 0.01 32.7 21.8 208 402-630 20-263 (980)
212 3g2s_A C-terminal fragment of 55.5 34 0.0012 31.0 7.7 70 600-670 50-125 (149)
213 3mjh_B Early endosome antigen 53.9 2.8 9.6E-05 28.0 0.1 15 291-305 5-19 (34)
214 3zyq_A Hepatocyte growth facto 52.7 20 0.00068 35.0 6.1 73 389-461 44-118 (226)
215 4abx_A DNA repair protein RECN 52.2 1.4E+02 0.0049 27.4 15.5 74 60-138 8-83 (175)
216 3m1i_C Exportin-1; heat repeat 51.6 77 0.0026 38.1 12.4 101 402-505 465-570 (1049)
217 2ko5_A Ring finger protein Z; 50.2 6.1 0.00021 32.7 1.5 49 288-339 25-74 (99)
218 1dvp_A HRS, hepatocyte growth 49.0 31 0.0011 33.3 6.9 72 390-461 42-115 (220)
219 2o35_A Hypothetical protein DU 48.7 6.5 0.00022 32.7 1.5 13 312-324 42-54 (105)
220 3zyq_A Hepatocyte growth facto 48.6 32 0.0011 33.4 6.9 71 600-671 47-118 (226)
221 3fyb_A Protein of unknown func 48.0 6.7 0.00023 32.6 1.5 13 312-324 41-53 (104)
222 1elk_A Target of MYB1; superhe 47.4 47 0.0016 30.3 7.4 73 389-461 52-130 (157)
223 3qml_C Protein SLS1, nucleotid 47.1 2.3E+02 0.0077 28.8 12.8 133 445-583 41-187 (315)
224 1dvp_A HRS, hepatocyte growth 46.7 31 0.001 33.4 6.4 71 600-671 44-115 (220)
225 3lay_A Zinc resistance-associa 44.6 66 0.0023 29.9 7.9 56 146-205 66-121 (175)
226 1m3v_A FLIN4, fusion of the LI 44.0 9 0.00031 33.4 1.8 51 290-341 31-84 (122)
227 3qml_C Protein SLS1, nucleotid 42.4 1.6E+02 0.0053 30.0 10.7 147 475-627 23-189 (315)
228 3l9t_A Putative uncharacterize 40.6 1.8E+02 0.0062 28.4 10.7 142 392-556 72-218 (240)
229 2jvx_A NF-kappa-B essential mo 40.6 7.4 0.00025 24.7 0.5 16 290-305 2-17 (28)
230 2jne_A Hypothetical protein YF 40.3 5.9 0.0002 32.9 -0.0 42 291-338 32-73 (101)
231 3ibv_A Exportin-T; karyopherin 39.1 5.6E+02 0.019 30.4 20.7 195 394-595 44-273 (980)
232 2yru_A Steroid receptor RNA ac 38.8 65 0.0022 27.9 6.5 78 30-120 12-89 (118)
233 6rxn_A Rubredoxin; electron tr 38.3 10 0.00034 27.2 0.9 14 286-299 25-38 (46)
234 2xqn_T Testin, TESS; metal-bin 36.2 16 0.00054 31.8 2.1 47 289-338 28-75 (126)
235 1lsh_A Lipovitellin (LV-1N, LV 35.4 6.2E+02 0.021 30.3 16.7 47 488-545 453-506 (1056)
236 1elk_A Target of MYB1; superhe 35.0 78 0.0027 28.7 6.8 70 600-670 55-129 (157)
237 1lsh_A Lipovitellin (LV-1N, LV 35.0 5E+02 0.017 31.1 15.8 130 391-549 441-579 (1056)
238 3gjx_A Exportin-1; transport, 34.4 5.6E+02 0.019 30.8 15.9 175 401-586 72-276 (1073)
239 1e8j_A Rubredoxin; iron-sulfur 34.1 15 0.00052 26.9 1.4 14 286-299 31-44 (52)
240 4rxn_A Rubredoxin; electron tr 32.4 14 0.00048 27.4 0.9 15 286-300 31-45 (54)
241 3a6p_A Exportin-5; exportin-5, 31.8 3.7E+02 0.013 32.7 14.2 179 400-586 57-277 (1204)
242 3o2t_A Symplekin; heat repeat, 29.9 5E+02 0.017 27.1 13.2 181 391-585 26-256 (386)
243 3gae_A Protein DOA1; UFD3, CDC 29.7 1.3E+02 0.0043 29.7 7.8 129 406-546 70-217 (253)
244 3gs3_A Symplekin, LD45768P; he 29.5 4.1E+02 0.014 26.0 14.9 143 389-545 14-172 (257)
245 2kn9_A Rubredoxin; metalloprot 29.3 20 0.00067 29.0 1.4 14 286-299 55-68 (81)
246 2k5c_A Uncharacterized protein 28.8 11 0.00037 30.1 -0.2 63 292-354 9-81 (95)
247 3uk3_C Zinc finger protein 217 28.8 32 0.0011 24.4 2.4 41 291-338 4-44 (57)
248 2xjy_A Rhombotin-2; oncoprotei 28.8 28 0.00096 30.3 2.5 49 289-338 27-78 (131)
249 1yk4_A Rubredoxin, RD; electro 28.1 18 0.00063 26.5 0.9 14 286-299 30-43 (52)
250 2kw6_A Cyclin-dependent kinase 28.0 20 0.00068 27.3 1.1 41 68-109 15-56 (65)
251 2v3b_B Rubredoxin 2, rubredoxi 28.0 18 0.00063 26.8 0.9 14 286-299 31-44 (55)
252 2rgt_A Fusion of LIM/homeobox 26.4 56 0.0019 29.9 4.3 47 289-338 31-77 (169)
253 2jtn_A LIM domain-binding prot 25.9 39 0.0013 31.4 3.1 48 289-339 85-132 (182)
254 3pwf_A Rubrerythrin; non heme 25.8 22 0.00075 33.1 1.3 28 289-336 136-163 (170)
255 3l9t_A Putative uncharacterize 25.8 4.7E+02 0.016 25.4 11.0 105 391-507 104-210 (240)
256 2jrp_A Putative cytoplasmic pr 25.7 2.7 9.1E-05 34.0 -4.3 41 292-338 3-43 (81)
257 1dx8_A Rubredoxin; electron tr 25.5 21 0.00073 27.9 0.9 15 286-300 35-49 (70)
258 1rut_X Flinc4, fusion protein 25.0 15 0.00051 34.6 -0.1 49 289-338 30-81 (188)
259 4e9m_A Nucleotide-binding olig 23.2 67 0.0023 28.7 3.8 76 53-137 27-102 (144)
260 1s24_A Rubredoxin 2; electron 22.7 27 0.00092 28.6 1.0 14 286-299 63-76 (87)
261 4gzn_C ZFP-57, zinc finger pro 22.2 44 0.0015 24.8 2.2 37 291-338 4-44 (60)
262 3pst_A Protein DOA1; protein d 21.4 3.8E+02 0.013 28.4 10.0 130 407-547 243-390 (425)
263 1wil_A KIAA1045 protein; ring 21.2 76 0.0026 25.6 3.3 35 286-321 10-47 (89)
264 2nz7_A NOD1, caspase recruitme 21.0 82 0.0028 26.3 3.8 78 54-141 14-92 (98)
265 3qfl_A MLA10; coiled-coil, (CC 20.7 2E+02 0.007 24.3 6.5 74 31-109 5-79 (115)
266 1x61_A Thyroid receptor intera 20.3 89 0.003 23.7 3.7 36 289-324 31-67 (72)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.8e-29 Score=272.24 Aligned_cols=265 Identities=22% Similarity=0.265 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhhcCch-hhhhhhhh
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLSIYDK-NKSRIMDE 472 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~ 472 (715)
..+.+|++.|.+++.+ +++|..|++.|++++|+.+|.. .++.+|.+|+++|.||+.+++ +|..|...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999975 8999999999999999999953 247899999999999998775 78888624
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhc-CC
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLST-HT 548 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~-~~ 548 (715)
.|+|+.|+.+|+++ +.++++.|+++|.+|+.. +++|..|++ .|+||.|+++| ..+++..++.|+.+|+||+. ++
T Consensus 126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 66799999999998 999999999999999985 568999998 99999999975 55778999999999999999 66
Q ss_pred ccHHHHH-HhCChHHHHHhhCC--h----hHHHHHHHHHHHHhC----CcchHHHHhhhCCcHHHHHHHhhcCChHHHHH
Q 038217 549 DNCVRMI-EAGAVTALVGALGH--E----GVAEEAAGALALIVR----QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKEN 617 (715)
Q Consensus 549 ~n~~~iv-~aG~v~~Lv~lL~~--~----~~~~~al~~L~~La~----~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~ 617 (715)
+|+..++ ..|+++.|+.+|.+ + .+++.|+++|.||+. .++++..+.+.|+ ++.|+++|++++...++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-HHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC-HHHHHHHHcCCChHHHHH
Confidence 8999998 78999999999962 2 489999999999985 7889999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 618 AVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
|+++|++|+..+ ++.+..+.+ .|+++.|+.|+.++++++++.|.+.|..|....+.
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999765 566777877 99999999999999999999999999888865443
No 2
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.7e-28 Score=278.31 Aligned_cols=280 Identities=21% Similarity=0.202 Sum_probs=241.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC--chhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY--DKNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~--~~nk~ 467 (715)
+.++.||..|.+++.+.|..|++.|++++..++++|..|++.|+||+||.+|++++..+|++|+++|.||+.+ ++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3689999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh------------------cC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR------------------LG 529 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~------------------~~ 529 (715)
.|+ +.|+|++|+.+|+++.+.+++++|+++|++||.++++|..|+. ++|+.|++++. ..
T Consensus 128 ~I~-~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 128 AIK-NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHH-HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHH-HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccccc
Confidence 999 9999999999999854889999999999999999999999996 46999999872 12
Q ss_pred ChhHHHHHHHHHHHhhcCCc-cHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCC-------------
Q 038217 530 TPRGKKDAVTALFNLSTHTD-NCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQ------------- 586 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~-n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~------------- 586 (715)
++.++++|+.+|+||+.+.+ +|..|++. |+++.|+.+|+ +...++.|+++|+||+..
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 46889999999999999775 58889886 56789999984 347899999999999864
Q ss_pred -------------cchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHH--HHHHHHhcCCcHHHHHHH
Q 038217 587 -------------PIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGAS--ATERVLKAPALVGLLQAL 650 (715)
Q Consensus 587 -------------~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~--~~~~l~~~~g~i~~L~~L 650 (715)
+.|...+.+.++ |+.|+.+|+. .++.++++|+++|++||.+.... ..+..+...|+++.|+.|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~-v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEV-VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp -----------CCCCGGGGGGSHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hcccccccccccCchhHHHHhcccH-HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 123334445555 7889999964 67999999999999999876332 122333437889999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhh
Q 038217 651 LFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 651 l~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+.++++.+++.|.++|+.|....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999998754
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=9.3e-29 Score=276.92 Aligned_cols=279 Identities=21% Similarity=0.222 Sum_probs=243.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I 469 (715)
.++.||..|++++++.|..|++.|++++.+++.++..+.+.|+||.|+.+|+++++.+|..|+++|.||+.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999988888898999999999999999999999999999999999987 7899999
Q ss_pred hhhcCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh--------cC--------Chh
Q 038217 470 MDEEGCLGSIVKVLR-FGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR--------LG--------TPR 532 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~--------~~--------~~~ 532 (715)
+ +.|+|+.|+.+|+ ++ +.++++.|+++|++|+..++++..|++ |++|.|+++|. ++ ++.
T Consensus 83 ~-~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 83 R-RQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp H-HTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred H-HcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9 9999999999999 66 899999999999999999889998886 99999999993 22 345
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCC-----------------
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQ----------------- 586 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~----------------- 586 (715)
..++|+++|+|||.+++++..++++ |+++.|+.+|. +..+++.|+.+|.+|+..
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 6669999999999998899999998 99999999995 347889999999999731
Q ss_pred ----------------------------------cchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCH
Q 038217 587 ----------------------------------PIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 587 ----------------------------------~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
+++.+.+++.++ ++.|+.+|.+ .++..++.|+++|++||.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA-IRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcch-HHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 234455666777 8999998886 4689999999999999987643
Q ss_pred H---HHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 632 S---ATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 632 ~---~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
. ..+.++...|+++.|+.++.+++.++++.|.++|+.+....+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2 213444448999999999999999999999999999987543
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=269.90 Aligned_cols=261 Identities=22% Similarity=0.266 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhhcCch-hhhhhhhhcC
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLSIYDK-NKSRIMDEEG 474 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g 474 (715)
+++|++.|.+++. ++++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ +|..+....|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4599999999986 48999999999999999999952 346789999999999998775 6777752467
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhc-CCcc
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLST-HTDN 550 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~-~~~n 550 (715)
+|+.|+.+|+++ +.++++.|+++|.+|+.. +++|..|++ .|+|+.|+++| ..+++..++.|+.+|+||+. +++|
T Consensus 244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 799999999998 999999999999999985 568899988 99999999975 55678999999999999999 7789
Q ss_pred HHHHH-HhCChHHHHHhhCC--h----hHHHHHHHHHHHHhC----CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 551 CVRMI-EAGAVTALVGALGH--E----GVAEEAAGALALIVR----QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 551 ~~~iv-~aG~v~~Lv~lL~~--~----~~~~~al~~L~~La~----~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
+..++ .+|+++.|+.+|.+ + .+++.|+++|.||+. +++++..+.+.|+ ++.|+.+|++++...++.|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~-i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc-HHHHHHHHcCCChHHHHHHH
Confidence 99998 78999999999962 2 489999999999984 7889999999999 99999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
++|++|+..+ ++.+..+.+ .|+++.|+.++.++++++++.|.+.|+.|....
T Consensus 401 ~aL~nLa~~~-~~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 401 GTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSC-HHHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999765 566777877 899999999999999999999999998887654
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=9e-27 Score=260.81 Aligned_cols=281 Identities=16% Similarity=0.167 Sum_probs=238.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
..+.++.|+..|++++++.|..|++.|++++..++++|..|++.|+||.|+++|+ +++++++++|+++|.||+.++++|
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 3468999999999999999999999999999988999999999999999999999 889999999999999999998899
Q ss_pred hhhhhhcCcHHHHHHHHh--------cC-------CCHHHHHHHHHHHHHhccCchhHHHHhccc-CcHHHHHHHhhcC-
Q 038217 467 SRIMDEEGCLGSIVKVLR--------FG-------LTTEARENAAATLFSLSAVHEYKKKIADES-GAVEALATLLRLG- 529 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~--------~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~-g~I~~Lv~LL~~~- 529 (715)
..|+ + |+++.|+.+|. ++ .+.++..+|+++|++|+.+++++..+.+ . |+++.|+.+|+++
T Consensus 122 ~~i~-~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 122 EELI-A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCV 198 (457)
T ss_dssp HHHH-H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHH
T ss_pred HHHH-h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhc
Confidence 9999 8 99999999993 22 1345666999999999999889999988 6 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 038217 530 -------------------------------------------------------------------------------- 529 (715)
Q Consensus 530 -------------------------------------------------------------------------------- 529 (715)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------ChhHHHHHHHHHHHhhcCCcc------HHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHH
Q 038217 530 ------------------TPRGKKDAVTALFNLSTHTDN------CVRMIEAGAVTALVGALG--HEGVAEEAAGALALI 583 (715)
Q Consensus 530 ------------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~L 583 (715)
++..++.|+++|.||+..... +..+.++|++|.|+++|. +.+++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 123455678899999875432 222336899999999996 679999999999999
Q ss_pred hCCcchHHHHhhhCCcHHHHHHHhhcCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CH
Q 038217 584 VRQPIGAAAVGEEEMAVTGLVGMMRCGT------PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TK 656 (715)
Q Consensus 584 a~~~e~~~~i~~~g~~I~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~ 656 (715)
+.+++.+..|.+ ++ +++|+++|..++ ++....++.+|.++...++ +....+.+ .|+++.|+.|+.++ ++
T Consensus 359 s~~~~~~~~i~~-~~-i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~-~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFS-SSMLNNIINLCRSSASP 434 (457)
T ss_dssp HTSGGGHHHHHH-HT-HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCC-HHHHHHHHHHHHCTTCH
T ss_pred hcCHHHHHHHHH-hh-hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHH-cCCHHHHHHHHcCCCcH
Confidence 998888776654 67 999999999864 3577899999999998774 45556665 89999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038217 657 RARRKAASLARVFQRCENA 675 (715)
Q Consensus 657 ~~k~~A~~lL~~l~~~~~~ 675 (715)
+++++|.++|..++.+.+.
T Consensus 435 ~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHHHHHcchhh
Confidence 9999999999988765543
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=2.3e-27 Score=255.72 Aligned_cols=243 Identities=19% Similarity=0.167 Sum_probs=216.1
Q ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHH
Q 038217 389 RATAELLIQQLAN-----------GSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAM 456 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-----------~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL 456 (715)
.+.++.|+..|.+ .+++.|..|++.|+++++.++.+|..+... |+||.|+.+|++++.+++++|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888888852 246789999999999999888899988755 6699999999999999999999999
Q ss_pred hhhhcC--chhhhhhhhhcCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCCh-
Q 038217 457 LNLSIY--DKNKSRIMDEEGCLGSIVKVL-RFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGTP- 531 (715)
Q Consensus 457 ~nLs~~--~~nk~~I~~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~~- 531 (715)
.||+.. +++|..|+ +.|+|+.|+.+| +++ +.++++.|+.+|++||. .++++..|+...|+|+.|+++|..+++
T Consensus 152 ~nLs~~~~~~~k~~i~-~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLR-EVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHTTCCHHHHHHHH-HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHhccCCHHHHHHHH-HCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 999985 47899999 999999999986 455 88999999999999999 668999998448999999999987654
Q ss_pred ---hHHHHHHHHHHHhhc----CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHH
Q 038217 532 ---RGKKDAVTALFNLST----HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVT 601 (715)
Q Consensus 532 ---~~~~~A~~aL~nLs~----~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~ 601 (715)
..++.|+.+|+||+. +++++..++++|+++.|+.+|. +..+++.|+++|.||+. +++++..+.+.|+ |+
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-i~ 308 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA-VS 308 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH-HH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC-HH
Confidence 489999999999996 7789999999999999999996 56899999999999995 6889999999999 99
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHH
Q 038217 602 GLVGMMRCGTPRGKENAVAALLELCRSGGASAT 634 (715)
Q Consensus 602 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~ 634 (715)
.|++++++++++.++.|+.+|.+|+.+.+..+.
T Consensus 309 ~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 999999999999999999999999999876544
No 7
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=2.1e-26 Score=261.16 Aligned_cols=281 Identities=18% Similarity=0.206 Sum_probs=233.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKT-GKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.|+.||..|.+++.+.|..|++.|++++.. +++||..|++.|+||+|+.+|++ .+.+++++|+.+|+||+.++++|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 46899999999999999999999999999985 68999999999999999999997 68899999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHh---cC--------------CCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLR---FG--------------LTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~---~~--------------~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
..|+ . |+++.|+++|. +| .+.+++++|+++|++||..++ ++..|.+..|+|+.|+.++++
T Consensus 169 ~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 169 MEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHH-H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHH-h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999 5 57999999872 11 146899999999999998775 588888756777788877653
Q ss_pred ------CC--------------------------------------------------------------------hhHH
Q 038217 529 ------GT--------------------------------------------------------------------PRGK 534 (715)
Q Consensus 529 ------~~--------------------------------------------------------------------~~~~ 534 (715)
.+ +.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 12 2334
Q ss_pred HHHHHHHHHhhcCC-----ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHh
Q 038217 535 KDAVTALFNLSTHT-----DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM 607 (715)
Q Consensus 535 ~~A~~aL~nLs~~~-----~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL 607 (715)
+.|+++|.|||... .++..+.+.|+++.|+.+|. +..++..|+++|.||+.++.++..| ..|+ |+.||.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~-ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHA-IPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHH-HHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCC-HHHHHHHh
Confidence 45555666665432 12223345688999999995 6799999999999999988888777 6677 99999999
Q ss_pred hcC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHHhhhh
Q 038217 608 RCG--------TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG--TKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 608 ~~~--------s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~~~~~ 675 (715)
.++ +......|+++|.||+..+ ....+.+.. .|+++.|+.|+.++ .+.+++.|+.+|..|+.+.+.
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~-~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH-TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 876 4678899999999999887 556667777 99999999999987 899999999999999876544
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=254.01 Aligned_cols=243 Identities=19% Similarity=0.152 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHH
Q 038217 389 RATAELLIQQLAN-----------GSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAM 456 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-----------~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL 456 (715)
.+.++.|+..|.+ .+...+..|++.|.+++..++.++..+... |+||.|+.+|.+++.+++++|+++|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3578888888842 246679999999999999888888888754 6699999999999999999999999
Q ss_pred hhhhcC--chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCCh--
Q 038217 457 LNLSIY--DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGTP-- 531 (715)
Q Consensus 457 ~nLs~~--~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~~-- 531 (715)
.||+.. +++|..|+ +.|+|+.|+.+|.+..+.++++.|+.+|++|+. .++++..|+...|+|+.|+++|..+++
T Consensus 268 ~nLs~~~~~~~k~~I~-~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLR-EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHTSSCCHHHHHHHH-HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHhcCCCHHHHHHHH-HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 999985 46899999 999999999986543388999999999999999 778999998548999999999987654
Q ss_pred --hHHHHHHHHHHHhhc----CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHH
Q 038217 532 --RGKKDAVTALFNLST----HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTG 602 (715)
Q Consensus 532 --~~~~~A~~aL~nLs~----~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~ 602 (715)
..++.|+++|+||+. +++++..++++|+++.|+.+|. +..+++.|+++|.||+. +++++..|++.|+ |+.
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-I~~ 425 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA-VSM 425 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH-HHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHH
Confidence 489999999999995 7789999999999999999996 56899999999999994 7889999999999 999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHhcCCHHH
Q 038217 603 LVGMMRCGTPRGKENAVAALLELCRSGGASA 633 (715)
Q Consensus 603 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~ 633 (715)
|++++++++++.++.|+.+|.+|+.+++.++
T Consensus 426 Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 426 LKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 9999999999999999999999999876554
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=9e-25 Score=248.01 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=239.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.|.|+.||+.|+ +++++.|..|++.|.+++..+++++..+++.|+||.|+.+|++++.++++.|+++|.||+.+. .++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999997 567899999999999999999999999999999999999999999999999999999999876 446
Q ss_pred hhhhhhcCcHHHHHHHHh-----------------------------------------------cCCCHHHHHHHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLR-----------------------------------------------FGLTTEARENAAATL 499 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~-----------------------------------------------~~~~~e~~~~Aa~~L 499 (715)
..+. ..|++++|+.+|. ++ +.+++..|+++|
T Consensus 179 ~~v~-~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL 256 (510)
T 3ul1_B 179 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAI 256 (510)
T ss_dssp HHHH-HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHH-HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 6666 7777777776653 22 567778888999
Q ss_pred HHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHH
Q 038217 500 FSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEA 576 (715)
Q Consensus 500 ~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~a 576 (715)
.+|+....++..+....|+++.|+.+|.+++...+..|+.+|.|++... .++..+++.|+++.|+.+|+ +..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9998877665554444899999999999999999999999999998755 46777889999999999996 56899999
Q ss_pred HHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCC
Q 038217 577 AGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGT 655 (715)
Q Consensus 577 l~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~ 655 (715)
+++|.||+.. ++.+..+.+.|+ ++.|+.++.+++...|..|+++|.+++.++..+....+.+ .|+++.|+.++.+.+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~-i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCC
Confidence 9999999875 557777888888 9999999999999999999999999999876677778888 999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038217 656 KRARRKAASLARVFQ 670 (715)
Q Consensus 656 ~~~k~~A~~lL~~l~ 670 (715)
+.+...+...|..+-
T Consensus 415 ~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 415 TKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887665543
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=3.6e-25 Score=259.06 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=243.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-----------------------------hhH---HHHHHcCCh
Q 038217 387 ANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-----------------------------ENR---AFIAKAGAI 434 (715)
Q Consensus 387 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-----------------------------~~r---~~i~~~G~i 434 (715)
...+.++.||..|++++...+..|++.|.|++...+ .++ ..++++|++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 456899999999999999999999999999997542 233 678899999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
|.|+.+|+++++.+|++|+++|.|++.+++++..++ +.|++++|+.+|+++ +...+++|+++|.+|+...+....+..
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv-~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVV-QEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 999999999999999999999999999989999999 999999999999999 899999999999999875443333211
Q ss_pred --ccCcHHHHHHHhhcCCh-hHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc
Q 038217 515 --ESGAVEALATLLRLGTP-RGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 515 --~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e 588 (715)
..|+||+|+.+|..+.. ..+..|+++|.||+..+ +++..++++|+++.|+.+|. ++.++..|+.+|.||+.+++
T Consensus 576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 14699999999986533 44578999999999875 68999999999999999994 56899999999999999988
Q ss_pred hHHHHhh-hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 589 GAAAVGE-EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 589 ~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.+..+.. .|+ ++.|+.++.+.+...|+.|+++|.+|+.++ +...+.+....|+++.|+.|+.+++..++..|.+.+.
T Consensus 656 ~~~~~v~~~g~-l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 656 VIKMFEGNNDR-VKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHSSSSH-HHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCc-HHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8888885 455 999999999999999999999999999965 4455566654799999999999999999999998887
Q ss_pred HHHH
Q 038217 668 VFQR 671 (715)
Q Consensus 668 ~l~~ 671 (715)
.+..
T Consensus 734 NL~~ 737 (810)
T 3now_A 734 NMIN 737 (810)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7754
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=3.5e-25 Score=259.14 Aligned_cols=282 Identities=16% Similarity=0.164 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.|.++.|+..|++++++.|.+|++.|.+++. ++++|..+++.|++|+|+.+|.+++..++++|+++|.||+.+.++...
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 3789999999999999999999999999995 578999999999999999999999999999999999999876554333
Q ss_pred hhh--hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 469 IMD--EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 469 I~~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
+.. ..|++++|+.+|.++.+...+..|+.+|.||+.. ++++..|.+ .|+++.|+.+|.++++.+++.|+++|+||+
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 210 2479999999998753555667899999999987 468888888 899999999999999999999999999999
Q ss_pred cCCccHHHHHH-hCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhh-hCCcHHHHHHHhhcCChHHHHHHHH
Q 038217 546 THTDNCVRMIE-AGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGE-EEMAVTGLVGMMRCGTPRGKENAVA 620 (715)
Q Consensus 546 ~~~~n~~~iv~-aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A~~ 620 (715)
.+++++..++. .|+++.|+.+++ +..++..|+++|+||+. +++....+++ .|+ ++.|+.++.+++.+.|+.|++
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~-I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW-LDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH-HHHHHHHHTCSSHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHCCCCHHHHHHHHH
Confidence 99999999886 799999999996 66999999999999998 6778888888 677 999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC---CHHHHHHHHHHHHHHHHhhhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTG---TKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~---~~~~k~~A~~lL~~l~~~~~~ 675 (715)
+|.|++.++ .+....+.+ .|++++|..+++.. +.++.+.|...|+.+-++..-
T Consensus 731 aL~NL~~~s-~e~~~~l~e-~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 731 IILNMINAG-EEIAKKLFE-TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHTTC-HHHHHHHHT-STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCC-HHHHHHHHH-CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 999999865 566778887 99999999998654 789999999999988876543
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=1.1e-24 Score=248.58 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=246.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.|.|+.||..|. +++++.|..|++.|.+++..+++++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+. +++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 468999999997 567999999999999999999999999999999999999999999999999999999999875 668
Q ss_pred hhhhhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
..++ ..|++++|+.+|.... ......+++++|.+++.+......+....|++|.|++++.+++++++.+|+++|.
T Consensus 198 ~~i~-~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 198 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHH-HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHH-HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 8888 9999999999997641 3457889999999999877655555444789999999999999999999999999
Q ss_pred HhhcCCccH-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 543 NLSTHTDNC-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 543 nLs~~~~n~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
+|+..+.++ ..++..|+++.|+.+|. +..++..++.+|.||+.. ++.+..+.+.|+ ++.|+.++.++++..++.|
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGHHHHTTCSSHHHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhccc-HHHHHHHHcCCCHHHHHHH
Confidence 999877654 45678899999999996 668999999999999875 557778889888 9999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 619 VAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 619 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+++|.+|+.++ ......+.. .|+++.|+.++.+++..++..|.+.|..+..
T Consensus 356 ~~aL~nl~~~~-~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 356 TWTMSNITAGR-QDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHTSC-HHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-HHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999886 556667777 9999999999999999999999988877754
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=7.8e-24 Score=241.37 Aligned_cols=281 Identities=19% Similarity=0.177 Sum_probs=247.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC-----HHHHHHHHHHHhhhhcC
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN-----PVAQENSVTAMLNLSIY 462 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~~~~A~~aL~nLs~~ 462 (715)
..|.|+.|+..|.+++.+.+..|++.|.+++.+++++|..+.+.|++++|+.+|...+ ..++.+++++|.|++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999999999999999999999999999999998654 45788999999999998
Q ss_pred chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 463 DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 463 ~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
..+...+....|+++.|+.+|.++ +.+++..|+++|.+|+...+.+..+....|+++.|+.+|.+++..++..|+.+|.
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 876555443578999999999998 9999999999999999887765554444899999999999999999999999999
Q ss_pred HhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 543 NLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 543 nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
||+... .++..+++.|+++.|+.+|. ++.++..|+++|.||+.. ++.+..+.+.|+ ++.|+.++.+++...+..|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~-i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH-HHHHHHHHHSSCHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCc-HHHHHHHhcCCCHHHHHHH
Confidence 998754 47778899999999999996 568999999999999875 456677888887 9999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 619 VAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 619 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+++|.+++.++..+....+.+ .|++++|+.|+.+.++.+...+...|..+-.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999998776667777888 9999999999999999999888876655543
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=5.7e-24 Score=216.76 Aligned_cols=236 Identities=27% Similarity=0.324 Sum_probs=218.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I 469 (715)
.++.|+..|.+++++.+..|++.|.+++..+++++..+.+.|+++.|+.+|++++..++..|+++|.+++.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 588999999999999999999999999998888999999999999999999999999999999999999998 6778999
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc-cCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS-AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
. +.|+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|++++.++++..+..|+.+|.||+...
T Consensus 83 ~-~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 83 V-DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp H-HTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999999988 9999999999999999 56678888888 899999999999999999999999999999855
Q ss_pred c-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 549 D-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 549 ~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
+ ++..+++.|+++.|+.+|. ++.++..++++|.+|+. .++.+..+.+.|+ ++.|++++.++++..++.|+.+|.+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG-VEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-HHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 4 5678899999999999996 56999999999999998 4567778888888 9999999999999999999999999
Q ss_pred HHhcCC
Q 038217 625 LCRSGG 630 (715)
Q Consensus 625 L~~~~~ 630 (715)
|+...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 998764
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.92 E-value=8e-24 Score=240.19 Aligned_cols=275 Identities=16% Similarity=0.203 Sum_probs=235.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc-hhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAK-TGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD-KNKS 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~-~nk~ 467 (715)
.++.+|..|.|++.+.|.+|+..+|++.. +...-...+++.|+||.||.+|++ +++.+|..|+++|.|++.+. +++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58899999999999999999999998763 322346788999999999999975 56899999999999997654 6788
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCC-----hhHHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGT-----PRGKKDAVTAL 541 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~-----~~~~~~A~~aL 541 (715)
.++ +.|+|+.|+.+|+++ +.++++.|+++|.+|+.+.+ ++..+.. .|+++.|+.++...+ ......++++|
T Consensus 138 ~vv-~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 138 AVV-DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHH-HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 888 999999999999998 99999999999999998754 6666776 999999999998654 24678899999
Q ss_pred HHhhcCCccHHHH-HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHHHHhhcCChHHHHH
Q 038217 542 FNLSTHTDNCVRM-IEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLVGMMRCGTPRGKEN 617 (715)
Q Consensus 542 ~nLs~~~~n~~~i-v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~ke~ 617 (715)
.|++.+..+...+ ...|++|.|+.+|. +++++..++++|.+|+..+..+ ..+.+.|+ ++.|++++.+++...+..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC-HHHHHHHHTCSCHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhccc-chhhhhhhcCCChhhhhH
Confidence 9999877654443 44689999999996 6799999999999999876544 55677777 999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 618 AVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|+.+|++++..+ +.....+.. .|+++.|+.++.++++.+++.|.++|..+..
T Consensus 294 al~aL~nl~~~~-~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 294 ALRAIGNIVTGT-DEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCC-HHHHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999887 556667777 9999999999999999999999998888764
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=3.7e-24 Score=219.06 Aligned_cols=233 Identities=24% Similarity=0.288 Sum_probs=212.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~~I 469 (715)
..+.++..|.+++++.+..|++.|+++...+++++..+.+.|++|.|+.+|.++++.++..|+++|.+++. +++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46788999999999999999999987666678899999999999999999999999999999999999998 45778889
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
+ +.|+++.|+.+|+++ +.+++..|+++|.+|+..++++ ..+.. .|+++.|+++|.++++..+..|+.+|.||+...
T Consensus 93 ~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 93 I-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp H-HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999999998 9999999999999999999988 77777 999999999999999999999999999999854
Q ss_pred -ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 549 -DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 549 -~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
+++..+++.|+++.|+.+|. ++.++..|+++|.+|+. .++.+..+.+.|+ ++.|+.++.++++..++.|+.+|.+
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc-HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57777889999999999996 56899999999999986 4667888888888 9999999999999999999999999
Q ss_pred HHh
Q 038217 625 LCR 627 (715)
Q Consensus 625 L~~ 627 (715)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 875
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=4.6e-23 Score=234.61 Aligned_cols=279 Identities=21% Similarity=0.194 Sum_probs=247.8
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|+..|.+++ ++.+..|++.|.+++..+++++..+++.|++|.|+.+|.+++..+++.|+++|.||+.+. .++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 358999999999876 999999999999999988999999999999999999999999999999999999999875 558
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..+. ..|+++.|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++|.+|+.
T Consensus 196 ~~i~-~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 196 DLVL-ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHH-HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHH-HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 8888 8999999999995444899999999999999987654444444 7999999999999999999999999999998
Q ss_pred CCccH-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHH
Q 038217 547 HTDNC-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAA 621 (715)
Q Consensus 547 ~~~n~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~ 621 (715)
...++ ..+++.|+++.|+.+|. ++.++..|+++|.+|+.. +.....+.+.|+ ++.|+.+|.++ ++..+..|+++
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA-LPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhh-HHHHHHHHcCCCcHHHHHHHHHH
Confidence 77655 56778999999999996 568999999999999884 557777888888 99999999998 99999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|.+|+.++ ......+.. .|+++.|+.++.++++.++..|.++|..+...
T Consensus 353 L~nl~~~~-~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 353 ISNITAGN-KDQIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999865 555667777 89999999999999999999999988888765
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.91 E-value=1.6e-22 Score=230.19 Aligned_cols=276 Identities=17% Similarity=0.184 Sum_probs=244.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhccCC-HHHHHHHHHHHhhhhcC-chhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLSTHN-PVAQENSVTAMLNLSIY-DKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d-~~~~~~A~~aL~nLs~~-~~nk 466 (715)
..++.|+..|.+++++.+..|++.|++++.... .+...+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999976554 67888999999999999999876 99999999999999987 5678
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nL 544 (715)
..++ ..|+++.|+.+|.++ +.++++.|+++|.+|+... .++..+.. .|+++.|+.+| ...++..+..|+++|.||
T Consensus 154 ~~~~-~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 154 KVVI-DHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHH-hCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888 899999999999997 9999999999999999764 46777777 89999999999 556789999999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
+....+....+..|+++.|+.+|. ++.++..++++|.+|+..+..+ ..+.+.|+ ++.|+.+|.++++..+..|+.+
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~-v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC-HHHHHHHTTCSCHHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH-HHHHHHHHcCCChhHHHHHHHH
Confidence 988666566667899999999996 6799999999999999876654 56777788 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~ 671 (715)
|.+|+.+. +.....+.. .|+++.|+.++.++ ++.++..|.++|..+..
T Consensus 310 L~nl~~~~-~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 310 VGNIVTGD-DAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHTTSC-HHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-HHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999876 456667777 99999999999999 99999999999888875
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=1.1e-22 Score=207.19 Aligned_cols=237 Identities=24% Similarity=0.299 Sum_probs=215.6
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYK 509 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~ 509 (715)
|+||.|+.+|.+++++++..|+.+|.+++.... ++..++ +.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIV-DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHH
Confidence 679999999999999999999999999988774 788898 999999999999998 899999999999999998 7788
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh-cCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS-THTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
..+.. .|+++.|+.++.++++..+..|+.+|.||+ ..++++..+++.|+++.|+.+|. ++.++..++++|.+|+..
T Consensus 80 ~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88887 999999999999999999999999999999 56778999999999999999996 568999999999999985
Q ss_pred cc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 PI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 ~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
.+ .+..+.+.|+ ++.|+.++.++++..+..|+.+|.+++..+ +.....+.. .|+++.|+.++.++++.+++.|.++
T Consensus 159 ~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 159 PDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp CHHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCcC-HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 44 5577888787 999999999999999999999999999865 556667777 9999999999999999999999999
Q ss_pred HHHHHHhhh
Q 038217 666 ARVFQRCEN 674 (715)
Q Consensus 666 L~~l~~~~~ 674 (715)
|..|.....
T Consensus 236 L~~l~~~~~ 244 (252)
T 4hxt_A 236 LENIKSGGW 244 (252)
T ss_dssp HHHHHHTCB
T ss_pred HHHHHcCCC
Confidence 999887543
No 20
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=8.5e-24 Score=213.37 Aligned_cols=195 Identities=21% Similarity=0.187 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchh
Q 038217 389 RATAELLIQQLANGSP--RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~--~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~n 465 (715)
.++++.||+.|.++++ +.|..|++.|+++++.++.+|..|.+.|+||+||.+|+++++++|+.|+++|.||+. +++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3578999999999987 889999999999999999999999999999999999999999999999999999998 4689
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh---cC-------------
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR---LG------------- 529 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~---~~------------- 529 (715)
|..|+ +.|+|++|+++|++..+.+++++|+++|++||..+++|..|+. ++|++|+.++. .|
T Consensus 87 k~~I~-~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 87 KLEVA-ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHH-HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccc
Confidence 99999 9999999999998532899999999999999999999999987 47999998763 12
Q ss_pred ChhHHHHHHHHHHHhhcC-CccHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCC
Q 038217 530 TPRGKKDAVTALFNLSTH-TDNCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~-~~n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~ 586 (715)
++.++.+|+.+|+||+.. +++|..|.+. |+|+.|+.+++ +...++.|+.+|+||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 458899999999999985 5899999987 67899999995 347899999999999864
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=5.5e-22 Score=225.92 Aligned_cols=278 Identities=17% Similarity=0.131 Sum_probs=246.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|+..|.++ +++.+..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.+++.+. .++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 35789999999987 8999999999999999988899999999999999999999999999999999999999875 668
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..+. ..|+++.|+.+|.+. +.+++..|+++|.+|+... ........ .|+++.|+.+|.++++.++..|+++|.+|+
T Consensus 209 ~~~~-~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 209 DYVL-QCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHH-HTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 8888 899999999999986 8999999999999999765 44444444 799999999999988999999999999999
Q ss_pred cCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 THT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
... +....+++.|+++.|+.+|. +..++..|+.+|.+|+.. ++....+.+.|+ ++.|+.+|.++++..++.|+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch-HHHHHHHHcCCCHHHHHHHHHH
Confidence 764 46777888999999999996 568999999999999875 456667788777 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|.+++.++ ......+.. .|+++.|+.++.++++.++..|.+.|..+...
T Consensus 365 L~~l~~~~-~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 365 ISNITAGN-TEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHTTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999876 445566776 89999999999999999999999988887653
No 22
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=210.12 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=173.9
Q ss_pred ChHHHHHhhccCCH--HHHHHHHHHHhhhhc-CchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Cchh
Q 038217 433 AIPHLRNLLSTHNP--VAQENSVTAMLNLSI-YDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEY 508 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~--~~~~~A~~aL~nLs~-~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~ 508 (715)
.+|.||.+|.++++ ++|..|+++|.+|+. ++++|..|. +.|+||+||.+|+++ +.++++.|+++|++|+. ++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence 58999999999888 899999999999996 557899999 999999999999998 99999999999999998 5789
Q ss_pred HHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC------------------C
Q 038217 509 KKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG------------------H 569 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~------------------~ 569 (715)
+..|++ .|+||.|+++|.+ ++...++.|+.+|+||+..+++|..+++. ++++|+.++. +
T Consensus 87 k~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999 9999999999984 78899999999999999999999999875 6999998762 3
Q ss_pred hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcC------ChHHHHHHHHHHHHHHhc
Q 038217 570 EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCG------TPRGKENAVAALLELCRS 628 (715)
Q Consensus 570 ~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~ 628 (715)
..+.++|.++|.||+. ++++|.+|.+.+|+|+.|+.+++.+ +.+.+|+|+.+|+|||.+
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 4899999999999988 4689999999888799999999873 568899999999999976
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=1.5e-21 Score=216.35 Aligned_cols=276 Identities=19% Similarity=0.148 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh
Q 038217 390 ATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~ 467 (715)
+.++.|+..|+++ +++.+..|++.|.+++..++++...+.+.|++|.|+.+|+++++.+++.|+++|.+++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5789999999988 8999999999999999888888888999999999999999999999999999999999876 5688
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-h-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-E-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.++ ..|+++.|+.+|++..+.+++..|+++|.+|+... . .+..+ . .++++.|++++.++++..+..|+++|.+|+
T Consensus 144 ~~~-~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVL-DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHH-HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHH-HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 888 89999999999996448999999999999999764 2 22222 2 689999999999989999999999999999
Q ss_pred cCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 THT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
... +++..++..|+++.|+.+|. +..++..|+++|.+|+...+ ....+.+.|+ ++.|+.++.++++..+..|+.+
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA-LQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCcc-HHHHHHHHcCCCHHHHHHHHHH
Confidence 864 56777888999999999996 56899999999999988654 4556777777 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.+++.+. +.....+.. .|+++.|+.++.++++.++..|.++|..+..
T Consensus 300 L~~l~~~~-~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 300 ISNITAGN-RAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHTTSC-HHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 99999866 455566777 8999999999999999999999998888764
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=2.5e-21 Score=220.51 Aligned_cols=279 Identities=19% Similarity=0.182 Sum_probs=246.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~ 467 (715)
.+.++.|+..|.+++++.+..|++.|.+++..++.++..+...|+++.|+.+|.+.+..++..|+++|.+|+.+. .+..
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 467899999999999999999999999999988899999999999999999999999999999999999999876 5555
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
... ..|+++.|+.+|.++ +.+++..|+++|.+|+...+ ....+.. .|+++.|+.+|.++++..+..|+.+|.||+.
T Consensus 252 ~~~-~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 252 WSV-VSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HHH-HGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHH-HHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 555 689999999999988 89999999999999997654 5566666 8999999999998889999999999999997
Q ss_pred CCc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 547 HTD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 547 ~~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
..+ ....+++.|+++.|+.+|. +..++..|+++|.+|+. .++....+++.|+ ++.|+.+|.++++..+..|+.+|
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL-IPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 644 5666788999999999997 56899999999999986 4556777888888 99999999999999999999999
Q ss_pred HHHHhcCCH--HHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 623 LELCRSGGA--SATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 623 ~~L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.+++..+.. .....+.. .|+++.|+.++.++++.++..|...|..+-..
T Consensus 408 ~~l~~~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 999987644 56667777 89999999999999999999998877766554
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=3.1e-21 Score=213.94 Aligned_cols=279 Identities=18% Similarity=0.196 Sum_probs=243.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc--hh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD--KN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~--~n 465 (715)
.+.++.|+..|++++++.+..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3588999999999999999999999999999888999999999999999999996 78999999999999999765 33
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
+..++ .|+++.|+.+|.++ +.+++..|+++|.+|+... +....+.. .|+++.|+.++.++++..+..|+.+|.||
T Consensus 186 ~~~~~--~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 186 EFAKV--SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp CGGGT--GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 33443 79999999999988 8999999999999999865 45666666 89999999999988899999999999999
Q ss_pred hcCCcc-HHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHH
Q 038217 545 STHTDN-CVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVA 620 (715)
Q Consensus 545 s~~~~n-~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~ 620 (715)
+...+. ...+++.|+++.|+.+|. ++.++..|+++|.+|+. +++....+.+.|+ ++.|+.++.++++..|..|+.
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI-FPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHH
Confidence 987654 455778899999999997 56899999999999986 5567777888887 999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+|.+++.++.......+.. .|+++.|+.++.+++++++..|...|..+....
T Consensus 341 ~L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999998744555666776 899999999999999999999998777776543
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.89 E-value=3e-22 Score=204.82 Aligned_cols=233 Identities=21% Similarity=0.260 Sum_probs=210.4
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhh-hcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNL-SIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYK 509 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nL-s~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~ 509 (715)
...+.++.+|.++|++++..|+.+|.++ +.+++++..++ +.|+++.|+.+|+++ +.+++..|+++|.+|+. .++++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHH-HcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 5689999999999999999999999765 55667788888 999999999999998 89999999999999998 56788
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
..+.. .|+++.|+.+|.++++..+..|+.+|.||+.+++++ ..+++.|+++.|+.+|. +..++..++++|.+|+..
T Consensus 90 ~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 88888 899999999999999999999999999999999988 88999999999999996 568999999999999985
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
++.+..+.+.|+ ++.|+.++.++++..++.|+.+|.+|+..+ +.....+.+ .|+++.|+.++.++++.+++.|.++
T Consensus 169 ~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 169 GNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp CHHHHHHHHHTTC-HHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred ChHHHHHHHHCCC-HHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 456677788888 999999999999999999999999999765 556667777 8999999999999999999999998
Q ss_pred HHHHH
Q 038217 666 ARVFQ 670 (715)
Q Consensus 666 L~~l~ 670 (715)
|..|.
T Consensus 246 L~~l~ 250 (252)
T 4db8_A 246 LEKLQ 250 (252)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=2.4e-21 Score=219.52 Aligned_cols=274 Identities=19% Similarity=0.157 Sum_probs=240.1
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|++.|.++ +++.+..|+..|++++.. ++++..+.+.|++|.|+.+|+++++.++..|+++|.||+.++ +++
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 46899999999754 899999999999999975 679999999999999999999999999999999999999875 557
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYKKKIADESGAVEALATLLRLGTP-RGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nL 544 (715)
..+. +.|+++.|+.+|+++ +.+.+..++.+|.+|+.. ++++..++. .|+++.|++++++++. .....++.+|+||
T Consensus 137 ~~i~-~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 137 MAVR-LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp HHHH-HHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 7887 899999999999998 899999999999999974 678888888 8999999999988664 5667789999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+++++..+++.|+++.|+.++. ++.++..++++|.+|+....... ...+. ++.|++++.+.++..++.|+++|
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~-i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGL-LGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHH-HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhH-HHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999996 56899999999999998643322 22355 99999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTG--TKRARRKAASLARVFQR 671 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~ 671 (715)
.+|+.++ +..+..+.+ .|+++.|+.++.+. .+.++..|..+|..+..
T Consensus 291 ~~L~~~~-~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 291 SNLTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHTTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHhcCC-HHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 9999876 456677777 89999999999863 47889999988888754
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=1.3e-21 Score=221.75 Aligned_cols=273 Identities=17% Similarity=0.125 Sum_probs=242.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.++.|+..|+++++..+..|+..|.+++.+ +.++..+... |+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 45799999999999999999999999999965 5677777754 9999999999764 8999999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|. +.|+++.|+.+|+++ +.+++..|+++|.+|+..+ ..+..+.+ .|+++.|++++.+++.+.+..++.+|.||+
T Consensus 95 ~~i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 95 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999 899999999999998 8999999999999999875 46666766 899999999999988899999999999999
Q ss_pred cC-CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 TH-TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~-~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
.. ++++..+++.|+++.|+.+|+ +......+..+|.+|+.+++++..+.+.|+ ++.|+.++.++++..++.|+++
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~-~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH-HHHHHTTTTSSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhCCChHHHHHHHHH
Confidence 74 678999999999999999995 347788899999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.+||...+... .. .|+++.|+.++.++++.++..|.++|..|..
T Consensus 251 L~~l~~~~~~~~----~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 251 LRNLSDAATKQE----GM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHTTCTTCS----CC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCChhhH----HH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 999998763211 12 4689999999999999999999988888765
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=4.4e-21 Score=223.83 Aligned_cols=274 Identities=19% Similarity=0.160 Sum_probs=240.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|++.|.++ +.+.+..|+..|++++.. ++++..+.+.|+++.|+.+|+++++.++..|+++|.||+.+. .++
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 46789999999865 899999999999999975 679999999999999999999999999999999999998875 557
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nL 544 (715)
..+. +.|+++.|+.+|+++ +.+.+..++.+|.+|+. +++++..+++ .|+++.|++++++++ ...+..++.+|+||
T Consensus 134 ~~v~-~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 134 MAVR-LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp HHHH-HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHH-HCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 7777 899999999999998 88888888999999996 6789999998 899999999998765 56788999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+++++..+++.|+++.|+.++. +..++..++++|.+|+...... ....+. ++.|+.++.+.++..++.|+++|
T Consensus 211 s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~-i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGL-LGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHH-HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhH-HHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999996 5689999999999998753221 122355 99999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTG-T-KRARRKAASLARVFQR 671 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~-~~~k~~A~~lL~~l~~ 671 (715)
.+|+.++ ...+..+.+ .|+++.|+.++.+. + +.++..|..+|..|..
T Consensus 288 ~~L~~~~-~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 288 SNLTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCC-HHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 9999876 456667777 89999999999874 3 7899999988888853
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=2.4e-21 Score=226.05 Aligned_cols=274 Identities=17% Similarity=0.121 Sum_probs=243.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.++.|+..|+++++.++..|+..|.+++.++ .++..+... |+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 457899999999999999999999999999765 577777754 8999999999875 8999999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|. +.|+++.|+.+|+++ +.+++..|+.+|.+|+... ..+..+.. .|+++.|+++|++++++.+..++.+|.+|+
T Consensus 92 ~~i~-~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 92 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHH-TTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 9999 889999999999998 8999999999999999875 45666666 899999999999988888888999999999
Q ss_pred c-CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 T-HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~-~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
. +++++..+++.|+++.|+.+|+ .+.++..++.+|.+|+.+++++..+++.|+ ++.|+.++.+++...++.|+++
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~-l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTH-HHHHHTTTTCSCHHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHH
Confidence 6 6779999999999999999996 347888999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|.+||...+.. ... .|+++.|+.++.++++.++..|.++|..|...
T Consensus 248 L~nL~~~~~~~----~~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 248 LRNLSDAATKQ----EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHGGGCTTC----CSC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcchhh----hhh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999875321 111 36899999999999999999999988877653
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=2e-20 Score=222.71 Aligned_cols=270 Identities=21% Similarity=0.182 Sum_probs=226.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.++..|.+++.+.+..++..|+.. ++..+. .|+||.|+.+|.++++.++++|+.+|.+|+.+..++..++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 578899999999988888888887743 333444 8999999999999999999999999999999988888887
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-c
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-D 549 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~ 549 (715)
...|+++.|+.+|+++.+.+++.+|+.+|++|+..++++..|+. .|+|+.|+++|+++++.++..|+++|.||+... .
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 34589999999998765899999999999999999999999998 899999999999999999999999999999874 5
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCCh-HHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTP-RGKENAVAALLEL 625 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~-~~ke~A~~~L~~L 625 (715)
++..+++.|+|+.|+.+|. +..+...++.+|.+|+. +++++..+.+.++ ++.|+.+++++++ ..++.|+.+|++|
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~-i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-HHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC-HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6666778999999999996 55788889999999986 5789999999888 9999999998654 4577899999999
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|... ..+..+.. .|+++.|+.++.++++..++.|.++|..|...
T Consensus 347 s~~~--~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 347 SVCS--SNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HTST--THHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hcCh--HHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 9763 45667777 89999999999999999999998888877643
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=3.6e-20 Score=184.05 Aligned_cols=193 Identities=24% Similarity=0.304 Sum_probs=176.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~ 468 (715)
+..+.|+..|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|+++++.+++.|+++|.|++.+ ++++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4567889999999999999999999999988899999999999999999999999999999999999999964 577888
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
++ +.|+++.|+.+|+++ +..++..|+++|.+|+...+ .+..+.+ .|+++.|++++.++++..+..|+.+|.||+..
T Consensus 92 i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VI-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HH-HTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH-HCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88 999999999999998 99999999999999996554 5566776 89999999999999999999999999999987
Q ss_pred -CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 548 -TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 548 -~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
++++..+++.|+++.|+.++. ++.+++.|+.+|.+|++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 668888999999999999996 67999999999999985
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=3.8e-20 Score=183.90 Aligned_cols=194 Identities=22% Similarity=0.271 Sum_probs=174.9
Q ss_pred HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Cch
Q 038217 430 KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHE 507 (715)
Q Consensus 430 ~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~ 507 (715)
..|+.+.|+.+|.++|+.++..|+++|.+++.. ++++..++ +.|+++.|+.+|+++ +.+++..|+++|.+|+. +++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence 468899999999999999999999999999954 56788888 999999999999998 99999999999999995 566
Q ss_pred hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 508 YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 508 ~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
++..+.+ .|+++.|+.+|.++++..+..|+++|.||+... +++..+++.|+++.|+.+|. +..++..|+++|.+|+
T Consensus 88 ~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 8888887 999999999999999999999999999999754 46677889999999999996 6689999999999999
Q ss_pred CC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 585 RQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 585 ~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.. ++.+..+.+.|+ ++.|+.++.++++..++.|+.+|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTH-HHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCC-HHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 86 678888888888 9999999999999999999999999985
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.6e-20 Score=213.02 Aligned_cols=286 Identities=13% Similarity=0.128 Sum_probs=234.6
Q ss_pred hHHHhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCh-------------------------------------h-
Q 038217 383 AAVEANRATAELLIQQLAN-GSPRAKTVAAREIRLLAKTGK-------------------------------------E- 423 (715)
Q Consensus 383 ~~~~~~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~-------------------------------------~- 423 (715)
.....+.+.+..|+..+++ .+......++..|.|++...+ +
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 3444567788999999984 666677888888888775322 1
Q ss_pred hHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 038217 424 NRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE---ARENAAATLF 500 (715)
Q Consensus 424 ~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e---~~~~Aa~~L~ 500 (715)
++..+.++|+||.|+.+++++++.+++.|+++|.||+.+.++|..++ +.|++++|+.+|.++ +.. .+.+|+.+|.
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lv-qqGal~~LL~lL~s~-~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA-QQGAVKIILEYLANK-QDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHH-HTTHHHHHHHHTTCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcC-CCcchHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999 999999999999987 433 8999999999
Q ss_pred HhccCchhHHHHhc--ccCcHHHHHHHhhc--CCh------------hHHHHHHHHHHHhhcCCc-----cHHHHHHh-C
Q 038217 501 SLSAVHEYKKKIAD--ESGAVEALATLLRL--GTP------------RGKKDAVTALFNLSTHTD-----NCVRMIEA-G 558 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~--~~g~I~~Lv~LL~~--~~~------------~~~~~A~~aL~nLs~~~~-----n~~~iv~a-G 558 (715)
+|+...+....+.. ..|+|++|+.||.. +.. ..+..|+.+|.||+..++ .+.++++. |
T Consensus 527 rLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 99876655555532 14999999999973 211 127799999999999874 37889985 9
Q ss_pred ChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhC------CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 559 AVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEE------MAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 559 ~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g------~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
+++.|..+|. +..++..|+.+++||+.++++. ..+...+ + ++.||.++++++.+.|+.|+++|.+++...
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r-L~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN-FNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH-HHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc-HHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999995 5689999999999999988886 4554322 3 789999999999999999999999997665
Q ss_pred CHHHHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHHHHh
Q 038217 630 GASATERVLKAPALVGLLQALLFT--GTKRARRKAASLARVFQRC 672 (715)
Q Consensus 630 ~~~~~~~l~~~~g~i~~L~~Ll~s--~~~~~k~~A~~lL~~l~~~ 672 (715)
+..++.+.+..++++.|+.++++ +++..+..+..++..|...
T Consensus 686 -~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 686 -PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 56677777745799999999999 8999999998888888753
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=3.8e-20 Score=220.19 Aligned_cols=273 Identities=17% Similarity=0.130 Sum_probs=242.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.++.|+..|.+.+..+|..|+..|.+++.. ..++..+.+. |+++.|+.+|.++ ++.++.+|+.+|.+|+.+.+++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 56899999999999999999999999999975 5677777754 8999999999865 8999999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|. ..|+++.|+.+|+++ +..++..|+++|.+|+...+ .+..+.. .|+++.|+++|.+++...+..|+.+|.+|+
T Consensus 228 ~~i~-~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 228 LAIF-KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9998 889999999999998 89999999999999998754 5556656 899999999999888889999999999999
Q ss_pred c-CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 T-HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~-~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
. +++++..+++.|+++.|+.+|+ .....+.++.+|.+|+.+++++..+++.|+ ++.|+.++.+++...++.|+++
T Consensus 305 ~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~-l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 305 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTH-HHHHGGGTTCSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhch-HHHHHHHHcCCchHHHHHHHHH
Confidence 6 5679999999999999999997 246778899999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.+||...... ... .++++.|+.++.+.++.++..|.++|..|..
T Consensus 384 L~~L~~~~~~~----~~~-~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 384 LRNLSDAATKQ----EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHTTCTTC----SCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHhccchhh----hhh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999876321 112 4689999999999999999999998888765
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.79 E-value=5.6e-20 Score=175.96 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=72.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
..+|++|.||||+++|.|||+++|||+|||.||.+|+..++.+||.|+.++....++||..|+++|+.|+..||+.+
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 56899999999999999999999999999999999999855589999999999999999999999999999999864
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.4e-18 Score=195.02 Aligned_cols=274 Identities=12% Similarity=0.111 Sum_probs=227.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCch----
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDK---- 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~---- 464 (715)
.+..+++.|..++.+.+..|++.|..++. +++.|..+++. |+++.|+.+|++ .+..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 66788888888787789999999999996 58999999876 779999999995 788899999999999987432
Q ss_pred -----------------------------------hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH
Q 038217 465 -----------------------------------NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK 509 (715)
Q Consensus 465 -----------------------------------nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 509 (715)
++..+. +.|+++.|+.+++++ +...++.|+++|.+||.++++|
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~-eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL-RTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTT-TTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH-HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 345556 899999999999998 9999999999999999999999
Q ss_pred HHHhcccCcHHHHHHHhhcCChh---HHHHHHHHHHHhhcCCccHHHHH---HhCChHHHHHhhC-Chh-----------
Q 038217 510 KKIADESGAVEALATLLRLGTPR---GKKDAVTALFNLSTHTDNCVRMI---EAGAVTALVGALG-HEG----------- 571 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv---~aG~v~~Lv~lL~-~~~----------- 571 (715)
..+++ .|+++.|+.++.+++.. ++..|+.+|.+|....+....+- ..|+|++|+.+|. ++.
T Consensus 492 ~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 492 PQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999 99999999999887644 89999999999997655443321 1389999999997 222
Q ss_pred ---H-HHHHHHHHHHHhCCc-----chHHHHhhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHH-HHHHhc
Q 038217 572 ---V-AEEAAGALALIVRQP-----IGAAAVGEE-EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASAT-ERVLKA 640 (715)
Q Consensus 572 ---~-~~~al~~L~~La~~~-----e~~~~i~~~-g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~-~~l~~~ 640 (715)
+ +..|+.+|.|||..+ +.+..|+++ |+ ++.|.++|.+++...|+.|+.++.||+.+. ... +.+...
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga-~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~ 647 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY-WSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNL 647 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH-HHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCC
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH-HHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhh
Confidence 1 668999999999976 347878885 77 999999999999999999999999999864 222 233221
Q ss_pred C-----CcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 641 P-----ALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 641 ~-----g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
. +-++.|+.|+.+++...++.|.++|.++..
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 1 137899999999999999999999999853
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=3.7e-17 Score=171.55 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHH
Q 038217 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVK 481 (715)
Q Consensus 404 ~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~ 481 (715)
.+.+..|+..|..++. +.+|...|.+.|++|+|+. +|.++++.+++.|+++|.|++.++ ..+..++ +.|++++|+.
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv-~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL-GLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHH
Confidence 4678999999999996 5789999999999999999 999999999999999999999876 5688888 9999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC
Q 038217 482 VLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA 559 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~ 559 (715)
+|+++.+.+++..|+++|.+|+.+.. ....+.. .|+++.|+.+|++++..+++.|+++|.+|+. .++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99965478999999999999987554 5666777 8999999999999999999999999999987 4668899999999
Q ss_pred hHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 560 VTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 560 v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
++.|+.+|. +..+++.++.+|.+|+..
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999996 669999999999999876
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.76 E-value=3.7e-19 Score=150.76 Aligned_cols=75 Identities=32% Similarity=0.503 Sum_probs=70.5
Q ss_pred cCCCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 284 TFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 284 ~~~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
....+|++|.||||+++|.|||+++|||+|||.||++|+.. +.+||.|++++....+.||..++++|+.|+.+++
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 33678999999999999999999999999999999999996 7899999999999999999999999999998875
No 40
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-18 Score=173.58 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHhccC----CCCcccchHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHhhhhhccCCCCChH
Q 038217 122 SISGHFHDLNQEISTLLDVF----PADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHV 197 (715)
Q Consensus 122 ~i~~~f~~~~~~l~~~L~~l----p~~~l~~s~ev~e~v~~~~~q~~~~~~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~ 197 (715)
.++..++.+.+++..+|++| +....++++.|++.-+ .-+++...+.+.+..+..+.....++.++.+.....+.+
T Consensus 29 d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l~~-~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~~ 107 (267)
T 3htk_C 29 DLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITS-TYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDLS 107 (267)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 34444555555555555554 3344556777766433 334455555666677777777777787777888899999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCccchhhHhhHHHHHhhhhccccccccchhhhccccccccccccc
Q 038217 198 DLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLI 277 (715)
Q Consensus 198 ~l~~~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 277 (715)
.|.+++..++.+++..++..|..... ....-........++.++..+......+.+...+.++.+
T Consensus 108 twd~y~~~e~~ap~l~~~~~~~~~~~---~~~~~~~~~~~~~lk~~~~i~~~P~~~lPd~~~~~dDDD------------ 172 (267)
T 3htk_C 108 TWDKYRTGELTAPKLSELYLNMPTPE---PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDD------------ 172 (267)
T ss_dssp HHHHHHHTSSCCCCHHHHHHTCCCCS---CCSCCCCCHHHHHHHHHHHHHHCTTBCCCCCSSTTCSSC------------
T ss_pred HHHHHhcCCcCCchHHHHHHhccccC---cccccccchHHHHHHHccccccCCCCCCCCCCCCCCCcc------------
Confidence 99999999899999888766431000 000001122344556666666655554433211011111
Q ss_pred hhhhcccCCCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCC--CccccccCCCCccHHHHHHHHH
Q 038217 278 TQEIAETFLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPK--TGQMLVHDRLVPNRALRNLIVQ 353 (715)
Q Consensus 278 ~~~~~~~~~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~--c~~~l~~~~l~pn~~l~~~i~~ 353 (715)
. .......+|.||||+++|.|||+. .|||+|||.||.+||.. |...||. |++.+...++.||..|+++++.
T Consensus 173 ----I-~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 173 ----L-QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp ----C-CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred ----c-eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 1 234567799999999999999985 99999999999999986 4578999 9999999999999999999998
Q ss_pred HHHh
Q 038217 354 WCTA 357 (715)
Q Consensus 354 ~~~~ 357 (715)
|..+
T Consensus 248 ~k~r 251 (267)
T 3htk_C 248 AKMK 251 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.75 E-value=9.1e-19 Score=152.17 Aligned_cols=76 Identities=32% Similarity=0.504 Sum_probs=71.9
Q ss_pred CCCCCCCCcCccCcccccCceeCCCc-cHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIISTG-QTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~cg-htfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
...+|++|.||||+++|.|||+++|| |+|||.||++||.. +.+||.|++++....++||..|+++|+.|+.++++.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 35789999999999999999999999 99999999999987 789999999999999999999999999999999864
No 42
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.75 E-value=6.5e-19 Score=153.68 Aligned_cols=75 Identities=31% Similarity=0.467 Sum_probs=70.8
Q ss_pred CCCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
...+|++|.||||+++|.|||+++|||+|||.||.+||.. +.+||.|++++....+.||..++++|+.|+.+|+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999985 78999999999999999999999999999998874
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=2.4e-16 Score=165.40 Aligned_cols=221 Identities=17% Similarity=0.153 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHH
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEAL 522 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~L 522 (715)
+.+.+..|+..|.+++.+.+|+..++ ..|+++.|+. +|+++ +.++++.|+++|.+++.+++ .+..+.+ .|+++.|
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~-~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~L 129 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHH-HcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHH
Confidence 35678889999999999889999998 9999999999 99998 99999999999999998654 6777777 8999999
Q ss_pred HHHhhcC-ChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhC
Q 038217 523 ATLLRLG-TPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEE 597 (715)
Q Consensus 523 v~LL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g 597 (715)
+.+|.++ +...++.|+++|.||+.+. .+...++++|+++.|+.+|+ +..++..|+++|.+|+. .++.+..+++.|
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g 209 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 9999864 6789999999999999755 45677889999999999995 67999999999999987 577889999998
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CCcHHHH---HHHhh-cC-CHHHHHHHHHHHHHHH
Q 038217 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA-PALVGLL---QALLF-TG-TKRARRKAASLARVFQ 670 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~-~g~i~~L---~~Ll~-s~-~~~~k~~A~~lL~~l~ 670 (715)
+ ++.|+.+|.++++..++.|+.+|.+|+... .......... ..+...| .+-++ .. .....++|..++..+-
T Consensus 210 ~-i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~-~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 210 M-VQQLVALVRTEHSPFHEHVLGALCSLVTDF-PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp H-HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC-HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHcCCChhHHHHHHHHHHHHHhCC-hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 8 999999999999999999999999999885 3333333221 1122222 22233 22 3566677666666543
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=1.7e-17 Score=173.15 Aligned_cols=77 Identities=31% Similarity=0.565 Sum_probs=72.9
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
..+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.++....++||..++++|++|+.+|++.+
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 67899999999999999999999999999999999999877779999999999999999999999999999999864
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=4.2e-18 Score=142.12 Aligned_cols=75 Identities=53% Similarity=1.111 Sum_probs=71.6
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++....+.||..++++|++|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 568899999999999999999999999999999999998789999999999988999999999999999999986
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-16 Score=136.80 Aligned_cols=74 Identities=28% Similarity=0.499 Sum_probs=65.7
Q ss_pred CCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHhC-----CCCCCC--Cccc-cccCCCCccHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEEG-----HRTCPK--TGQM-LVHDRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~~-----~~~CP~--c~~~-l~~~~l~pn~~l~~~i~~~~~~ 357 (715)
..+++|.||||+++|.|||+++ |||+|||.||.+||..+ ..+||. |+.. +...++.||..|+.+|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3577999999999999999995 99999999999999863 469999 6655 8888999999999999999988
Q ss_pred cCC
Q 038217 358 HGI 360 (715)
Q Consensus 358 ~~~ 360 (715)
++-
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 763
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=126.16 Aligned_cols=76 Identities=30% Similarity=0.499 Sum_probs=68.9
Q ss_pred CCCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHh-CCCCCCCCcccc-ccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEE-GHRTCPKTGQML-VHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~-~~~~CP~c~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
..+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++++ ....+.+|..++++++.|...++..
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 57889999999999999999998 9999999999999976 457999999997 5668999999999999999987754
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.47 E-value=5.9e-12 Score=141.56 Aligned_cols=273 Identities=15% Similarity=0.141 Sum_probs=214.5
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchh-
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKN- 465 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~n- 465 (715)
.+|+.|+.+|+ +.-.+.|+.|+..|+.++++ ++.. +..++++.|+..|+. .|.++...++.+|+++...++.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 48999999998 45688999999999999865 3333 446899999999976 5889999999999987443211
Q ss_pred -----------------hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHh
Q 038217 466 -----------------KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLL 526 (715)
Q Consensus 466 -----------------k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL 526 (715)
...+..+.+.|+.|+.+|+.. +...|.+++.+|..|+.+.. ++..|...+++|+.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 123333678999999999988 99999999999999986554 6888887689999999999
Q ss_pred hcCChhHHHHHHHHHHHhhcCCccHHHHHHh-CChHHHHHhhCC------hhHHHHHHHHHHHHhCCc-chHHHHhhhCC
Q 038217 527 RLGTPRGKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGALGH------EGVAEEAAGALALIVRQP-IGAAAVGEEEM 598 (715)
Q Consensus 527 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~v~~Lv~lL~~------~~~~~~al~~L~~La~~~-e~~~~i~~~g~ 598 (715)
.+..+..+-.|+.+|.+|+.+..+.++++.. |+++.|+.++.. +.++..|+.+|.||.... .++..+.+.|.
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 9888889999999999999999988888876 999999999952 267899999999998854 47777777777
Q ss_pred cHHHHHHHhhcCCh------HHHHH---HHHHHHHHHhcCCH-----HHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHH
Q 038217 599 AVTGLVGMMRCGTP------RGKEN---AVAALLELCRSGGA-----SATERVLKAPALVGLLQALLFTG--TKRARRKA 662 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~------~~ke~---A~~~L~~L~~~~~~-----~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A 662 (715)
++.|..++..+.+ ..-.+ ++.++..|+..++. ..+.++.+ .|++..|+.++.+. ...++..|
T Consensus 256 -i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 256 -IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp -GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred -HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHH
Confidence 9999999875432 12233 66677777776432 35667777 99999999998765 55666666
Q ss_pred HHHHHHH
Q 038217 663 ASLARVF 669 (715)
Q Consensus 663 ~~lL~~l 669 (715)
...+--+
T Consensus 334 l~tla~~ 340 (651)
T 3grl_A 334 INTVSEV 340 (651)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=128.39 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=64.4
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc-CCCCccHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH-DRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~-~~l~pn~~l~~~i~~~~~~ 357 (715)
.+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++++++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3556899999999999999999999999999999999767799999999987 6799999999999988744
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.5e-13 Score=129.00 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=64.3
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC-CCCccHHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD-RLVPNRALRNLIVQWCT 356 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~-~l~pn~~l~~~i~~~~~ 356 (715)
.+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 35668999999999999999999999999999999998777999999999887 89999999999998864
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.38 E-value=1.2e-10 Score=130.87 Aligned_cols=278 Identities=14% Similarity=0.081 Sum_probs=213.7
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhChh-----------------hHHHH-HHcCChHHHHHhhccCCHHH
Q 038217 389 RATAELLIQQLAN--GSPRAKTVAAREIRLLAKTGKE-----------------NRAFI-AKAGAIPHLRNLLSTHNPVA 448 (715)
Q Consensus 389 ~~~i~~Lv~~L~s--~~~~~~~~A~~~L~~La~~~~~-----------------~r~~i-~~~G~i~~Lv~lL~s~d~~~ 448 (715)
..+++.|+..|+. .+.+....++..|.++...+++ +...+ .+.+.|+.|+.+|.+.|..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4578899999975 4788888899999887654432 11222 34589999999999999999
Q ss_pred HHHHHHHHhhhhcCch--hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh
Q 038217 449 QENSVTAMLNLSIYDK--NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526 (715)
Q Consensus 449 ~~~A~~aL~nLs~~~~--nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL 526 (715)
+.+++..|..|+.+.. +++.|....++|+.|+.+|+.. ...+|..|+.+|.+|+....+-.+++...|+++.|++++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 9999999999987663 5788885679999999999987 888999999999999999998888888689999999999
Q ss_pred hcCCh----hHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC-C-------hhHHH---HHHHHHHHHhCC----
Q 038217 527 RLGTP----RGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG-H-------EGVAE---EAAGALALIVRQ---- 586 (715)
Q Consensus 527 ~~~~~----~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~-~-------~~~~~---~al~~L~~La~~---- 586 (715)
..+.. .+..+++.+|.||..+. .|+..+.+.|+++.|..+|. + +.... .++.++..|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 86432 56889999999999865 59999999999999999995 1 11223 367777777653
Q ss_pred ---cchHHHHhhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHhc--------CCcHHHHHHHhhc
Q 038217 587 ---PIGAAAVGEEEMAVTGLVGMMRCG--TPRGKENAVAALLELCRSGGASATERVLKA--------PALVGLLQALLFT 653 (715)
Q Consensus 587 ---~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~--------~g~i~~L~~Ll~s 653 (715)
..++.++.+.|+ ++.|++++... +..++..|+.++..+.+++ ...+..+.+. .-++..|+.++.+
T Consensus 298 ~~t~~nQ~~~~~~g~-l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 298 GATSSCQKAMFQCGL-LQQLCTILMATGVPADILTETINTVSEVIRGC-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp HHHHHHHHHHHHTTH-HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHCCC-HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 135678888888 99999988764 6788999999999999887 4555565541 1145555666655
Q ss_pred C-CHHHHHHHHHHHHHH
Q 038217 654 G-TKRARRKAASLARVF 669 (715)
Q Consensus 654 ~-~~~~k~~A~~lL~~l 669 (715)
. ....|-.|...++-+
T Consensus 376 ~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 5 455555555555544
No 52
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.37 E-value=1.3e-13 Score=108.35 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=49.8
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccH
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 345 (715)
.|.||||+++|.|||+. +|||+|||.||++|+.. +.+||.|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 99999999999999987 56799999999999999875
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=117.39 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=65.5
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
.+++++.||||++.|.+|+++ +|||+||+.||.+|+.. ..+||.|+.++....+.+|..++++++.|.....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 356689999999999999988 89999999999999986 6899999999988889999999999999987654
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=3.9e-13 Score=117.41 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=64.2
Q ss_pred CCCCCCcCccCcccccCcee-CCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhc
Q 038217 287 SIPKDFCCPIMLDLMRDPVI-ISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~-~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 358 (715)
.+.+++.||||+++|.+||+ ++|||+||+.||.+|+..+...||.|+.++....+.+|..+..+++....-.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 46678999999999999999 8999999999999999986689999999999999999999988877765443
No 55
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.31 E-value=5.5e-13 Score=155.07 Aligned_cols=75 Identities=27% Similarity=0.455 Sum_probs=70.8
Q ss_pred CCCCCCCCcCccCcccccCceeCCCc-cHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIISTG-QTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~cg-htfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
..++|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.++++++...++||..||..|++||.+++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999997 79999999999988 77999999999999999999999999999998874
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.2e-12 Score=116.13 Aligned_cols=68 Identities=13% Similarity=0.369 Sum_probs=61.3
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccC----CCCccHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD----RLVPNRALRNLIVQWC 355 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~----~l~pn~~l~~~i~~~~ 355 (715)
.+++++.||||+++|.+||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456799999999999999998 99999999999999987 58999999998765 6889999999998765
No 57
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.27 E-value=1.7e-12 Score=116.98 Aligned_cols=70 Identities=20% Similarity=0.493 Sum_probs=64.1
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
..+++++.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++..|.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 4678899999999999999999999999999999999986679999999999988999999999887653
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=5.9e-13 Score=112.40 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=57.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh-----CCCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-----GHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....+.+|..++++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 567889999999999999999999999999999999987 36799999999988888888766543
No 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.9e-12 Score=108.49 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=54.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
....+++.||||++.+.+|++++|||+||+.||.+|+.. ...||.|++++. ..+.+|..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~ 72 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAK 72 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHH
Confidence 456678999999999999999999999999999999987 789999999986 567788665443
No 60
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-13 Score=115.06 Aligned_cols=65 Identities=26% Similarity=0.543 Sum_probs=57.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhC------CCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEG------HRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~------~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
..+++++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 5678899999999999999999999999999999999863 6799999999988888888766543
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.24 E-value=9.5e-13 Score=118.10 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=62.6
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc-------CCCCccHHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH-------DRLVPNRALRNLIVQWC 355 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~-------~~l~pn~~l~~~i~~~~ 355 (715)
....+++.||||++++.+||+++|||+||+.||.+|+..+...||.|++++.. ..+.+|..+..++.+|.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34567899999999999999999999999999999998878899999999864 56788999999998875
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4e-12 Score=101.98 Aligned_cols=56 Identities=13% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
..+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|++++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 46788999999999999999999999999999999997667899999998876543
No 63
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.4e-12 Score=102.68 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=52.7
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
..+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|++++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 5678899999999999999998 99999999999999987 7899999999988777655
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=2.2e-12 Score=123.44 Aligned_cols=71 Identities=23% Similarity=0.478 Sum_probs=62.8
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccc-cCCCCccHHHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLV-HDRLVPNRALRNLIVQWCT 356 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~-~~~l~pn~~l~~~i~~~~~ 356 (715)
..+.+++.||||++.|.+||++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..++.+|..|..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4567789999999999999988 999999999999999987899999999984 4568999999999998854
No 65
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23 E-value=4.9e-12 Score=103.93 Aligned_cols=60 Identities=33% Similarity=0.481 Sum_probs=50.4
Q ss_pred CCCCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHh-CCCCCCCCcccccc-CCCCcc
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEE-GHRTCPKTGQMLVH-DRLVPN 344 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~-~~l~pn 344 (715)
...+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++++.. ..+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 357888999999999999999998 9999999999999986 34799999997543 334444
No 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.5e-13 Score=111.11 Aligned_cols=65 Identities=22% Similarity=0.581 Sum_probs=57.9
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh-----CCCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-----GHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....+.+|..++++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 567889999999999999999999999999999999986 46899999999998888888766543
No 67
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=1.5e-12 Score=117.15 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=62.9
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhc
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 358 (715)
.+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+.++....+.+|..+++++..+....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 456799999999999999999 9999999999999987 78999999998889999999999999886554
No 68
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.20 E-value=4.5e-12 Score=117.51 Aligned_cols=64 Identities=17% Similarity=0.357 Sum_probs=53.8
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
.+++.||||++.|.+||+++|||+||+.||.+|+.. ..+||.|++++... .+|..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 347899999999999999999999999999999987 78999999988543 34666666666665
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=6.9e-12 Score=111.82 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhC--CCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEG--HRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
+.+++.||||++.+.+|++++|||+||+.||.+|+..+ ...||.|+.++....+.+|..+..+++.+.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 34578999999999999999999999999999999863 368999999999888888876666655554
No 70
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=100.23 Aligned_cols=56 Identities=25% Similarity=0.553 Sum_probs=49.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~~~l 341 (715)
..+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 567889999999999999999999999999999999973 56799999998876543
No 71
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.7e-11 Score=97.93 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=49.1
Q ss_pred CCCcCccCcc-cccCc----eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 290 KDFCCPIMLD-LMRDP----VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 290 ~~~~CpIc~~-lm~dP----v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4789999999 99999 4679999999999999998877899999999988777664
No 72
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.5e-11 Score=95.43 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=43.2
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKT 332 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c 332 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 567889999999999999999999999999999999985 46789987
No 73
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.13 E-value=7.7e-12 Score=116.06 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=58.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc---------cCCCCccHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV---------HDRLVPNRALRNLIVQ 353 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~---------~~~l~pn~~l~~~i~~ 353 (715)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++. ...+.|+..++..|.+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 4578899999999999999999999999999999999987779999998643 2346688888877764
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=116.94 Aligned_cols=69 Identities=20% Similarity=0.504 Sum_probs=63.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 354 (715)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..+...|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 468889999999999999999999999999999999998667999999999988899999998887754
No 75
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=2e-11 Score=109.59 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=57.6
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC-ccHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV-PNRALRNLIVQW 354 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~-pn~~l~~~i~~~ 354 (715)
++++++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+.++...++. ++..+..++.++
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 35568999999999999999999999999999999998778999999999877765 456666665443
No 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.10 E-value=2.8e-11 Score=98.41 Aligned_cols=59 Identities=22% Similarity=0.417 Sum_probs=51.7
Q ss_pred CCCCCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccH
Q 038217 286 LSIPKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 345 (715)
....+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++...++.+++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 3456789999999999998 88899999999999999988 67999999999888877653
No 77
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.09 E-value=6e-09 Score=102.92 Aligned_cols=187 Identities=22% Similarity=0.196 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
...++.|+..|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3478899999999999999999999877542 367999999999999999999999998764
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
..++++.|+..|++. +..+|..|+.+|..+.. .++++.|+.++.++++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ---CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 356789999999887 99999999999988743 5689999999998999999999999998843
Q ss_pred ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
..+++.|+.+++ ++.++..++.+|..+.. ... ++.|..++.+.++.+|..|..+|..+.
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV-RAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH-HHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH-HHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 257889999997 55899999999999842 234 788999999999999999999999887
Q ss_pred hcCC
Q 038217 627 RSGG 630 (715)
Q Consensus 627 ~~~~ 630 (715)
...+
T Consensus 203 ~~~~ 206 (211)
T 3ltm_A 203 SFNH 206 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
No 78
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.04 E-value=1.5e-08 Score=99.14 Aligned_cols=182 Identities=23% Similarity=0.211 Sum_probs=154.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
...+.++..|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 467899999999999999999999876552 367899999999999999999999997763
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
..++++.|+..|.+. +..+|..|+.+|..+.. ..+++.|+.++.+.++.++..|+.+|.++..
T Consensus 74 --~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred --CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 346789999999887 99999999999987642 5689999999998889999999999988853
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
.++++.|+.++. ++.++..|+.+|..+.. ... ++.|..++.+.++.+|..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV-RAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH-HHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH-HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 457889999997 45899999999998831 234 889999999899999999999987653
No 79
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2e-10 Score=97.52 Aligned_cols=54 Identities=17% Similarity=0.423 Sum_probs=48.7
Q ss_pred CCCCCCCcCccCcccccC----ceeCCCccHhhHHHHHHHHHhC--CCCCCCCccccccC
Q 038217 286 LSIPKDFCCPIMLDLMRD----PVIISTGQTYDRRSIARWMEEG--HRTCPKTGQMLVHD 339 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~d----Pv~~~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~~ 339 (715)
..+.+++.||||++.+.+ |++++|||+||+.||.+|+... ...||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 567889999999999999 9999999999999999999974 57999999987654
No 80
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=90.31 Aligned_cols=47 Identities=28% Similarity=0.721 Sum_probs=42.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKT 332 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c 332 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467789999999999999999999999999999999875 57899987
No 81
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.4e-11 Score=96.83 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=47.0
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
....+++.|+||++.+.+|++++|||+||+.||.+|+.. ...||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 345668999999999999999999999999999999987 58999999987654
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.00 E-value=1.8e-08 Score=104.06 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
....++.|+..|.++++.++..|++.|..+.. .+.++.|+.+|.++++.++..|+.+|.++......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-- 87 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-- 87 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--
Confidence 34578999999999999999999999988751 24688999999999999999999999888643321
Q ss_pred hhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
+ ...++.|.. ++... +..+|..|+.+|..+...... .. ..+++.|+.++.+.++.++..|+.+|.++..
T Consensus 88 -~---~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 -E---DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp -H---HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred -c---hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1 123344443 34555 889999999999988642211 11 3578899999998889999999999987753
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
.++++.|+.++. ++.++..++.+|..+.... ... ++.|+.++.+.++.+|..|+.+|..
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~-~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDI-RDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHH-HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHH-HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 258999999997 4588899999998874221 133 7889999988889999999998887
Q ss_pred HHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 625 LCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 625 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+.. ..+++.|..++.+++ ++..|...|..+
T Consensus 219 ~~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 219 RKD-------------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp TTC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred hCC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 651 234666666666543 555555555444
No 83
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.98 E-value=8.5e-11 Score=93.36 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=48.1
Q ss_pred CCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 290 KDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 290 ~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 478999999999988 77899999999999999998 7899999999987776554
No 84
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=92.79 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=47.0
Q ss_pred CCCCCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..+++++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 5677899999999999998 88899999999999999998 7899999988754
No 85
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.97 E-value=3e-08 Score=97.84 Aligned_cols=185 Identities=23% Similarity=0.185 Sum_probs=153.4
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
.+.++.|+.+|.++++.++..|+.+|..+. ..++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIG------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC-------
Confidence 467999999999999999999999998753 357899999999987 9999999999998764
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e 588 (715)
. .++++.|+++|.+.++.++..|+.+|.++.. .++++.|+.+|. ++.++..++.+|..+..
T Consensus 79 ---~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 79 ---D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ---C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ---C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2 5789999999999999999999999988753 357899999997 55899999999998842
Q ss_pred hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
... ++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|...|..
T Consensus 142 -------~~~-~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 -------ERA-VEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp -------GGG-HHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred -------HHH-HHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235 8999999998899999999999988732 1236678888999999999999998887
Q ss_pred HHHh
Q 038217 669 FQRC 672 (715)
Q Consensus 669 l~~~ 672 (715)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 7654
No 86
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.95 E-value=3.7e-08 Score=96.39 Aligned_cols=183 Identities=23% Similarity=0.190 Sum_probs=152.0
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
.+..+.++.+|.++++.++..|+.+|..+. ..++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIG------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC-------
Confidence 356789999999999999999999998654 346789999999887 9999999999997763
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e 588 (715)
. .++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+|. ++.++..++.+|..+..
T Consensus 74 ---~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 ---D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ---C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2 5789999999999889999999999988743 247888999996 55899999999998842
Q ss_pred hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
... ++.|..++.+.++.+|..|+.+|..+.. + .+++.|..++.++++.++..|...|..
T Consensus 137 -------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 -------ERA-VEPLIKALKDEDGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -------GGG-HHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -------HHH-HHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999988721 1 136678888899999999999888776
Q ss_pred HH
Q 038217 669 FQ 670 (715)
Q Consensus 669 l~ 670 (715)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 87
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=4.9e-10 Score=92.62 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCCCCCcCccCcccc--cCceeCC--CccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLM--RDPVIIS--TGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm--~dPv~~~--cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
..+.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.|++++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4578899999999988 4566665 999999999999998778899999998876544
No 88
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.90 E-value=5.6e-10 Score=92.47 Aligned_cols=58 Identities=17% Similarity=0.396 Sum_probs=49.1
Q ss_pred CCCCCCCcCccCcccccCce---eCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 286 LSIPKDFCCPIMLDLMRDPV---IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv---~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
....+++.|+||++.|.+|. +++|||+||+.||.+|+.. ..+||.|+.++....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 45667899999999998773 4599999999999999987 6899999999987766554
No 89
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.80 E-value=2.1e-09 Score=86.49 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=42.5
Q ss_pred CCCcCccCcccccCc-eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 290 KDFCCPIMLDLMRDP-VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 290 ~~~~CpIc~~lm~dP-v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
++..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999998 56799999999999999987 6899999988753
No 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.80 E-value=5.3e-08 Score=116.80 Aligned_cols=271 Identities=13% Similarity=0.074 Sum_probs=192.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH----HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIA----KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~----~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.++.|+..+.++++..+..++..|..++++.+..-..-. -.+.+|.|+.++++.+..++..|+.+|.++.......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 688999999999999999999999999976443211000 1245778888888899999999999999887543321
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..-. -.+.++.++..+..+ +.++|..|+.+|..|+...... +.. ..+.++.++.++.+.++.++..|+.++.+++
T Consensus 209 ~~~~-~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 209 LMLH-IDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDR--LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHTS-HHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHH--HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 1111 246788888888887 8999999999999998643321 111 1357888888888888899999999999998
Q ss_pred cCCccHHHHH--HhCChHHHHHhh-----------CC-----------h--hHHHHHHHHHHHHhCCcchHHHHhhhCCc
Q 038217 546 THTDNCVRMI--EAGAVTALVGAL-----------GH-----------E--GVAEEAAGALALIVRQPIGAAAVGEEEMA 599 (715)
Q Consensus 546 ~~~~n~~~iv--~aG~v~~Lv~lL-----------~~-----------~--~~~~~al~~L~~La~~~e~~~~i~~~g~~ 599 (715)
.....+..+. -...+|.++..+ .| . .++..+..+|..|+.... ..+.. ..
T Consensus 285 ~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l- 360 (852)
T 4fdd_A 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-HI- 360 (852)
T ss_dssp TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-HH-
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-HH-
Confidence 7654333221 114567777766 22 0 246677778877765321 12222 23
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
++.+.+++.+.+...|+.|+.+|..++.+.++... ... .++++.|+.++.+.+++++..|.+.+..+..+
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-PYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777788888999999999999999987643222 222 35789999999999999999999988877764
No 91
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=3.8e-09 Score=86.49 Aligned_cols=52 Identities=13% Similarity=0.438 Sum_probs=45.5
Q ss_pred CCCCCCCcCccCcccccCceeC---CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII---STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.++.++..|+||++.+.+|..+ +|||.||+.||.+|+.. ..+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4567788999999999887655 99999999999999998 5699999998754
No 92
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.78 E-value=2.8e-07 Score=95.02 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHH-HhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLR-NLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
...++.|+..|.+.++.++..|+..|..+.... .... ..++.|. .++.++++.++..|+.+|.++.....
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--- 123 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP--- 123 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---
Confidence 347889999999999999999999998776321 1100 1233444 24567899999999999999864331
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.. ...+++.|+..|+++ +..+|..|+.+|..+.. .++++.|+.++.+.++.++..|+.+|.++...
T Consensus 124 -~~-~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 189 (280)
T 1oyz_A 124 -IY-SPKIVEQSQITAFDK-STNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD 189 (280)
T ss_dssp -GG-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred -cc-cHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC
Confidence 11 345688999999887 99999999999987643 46899999999998899999999999888432
Q ss_pred CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
. ..+++.|+.++. ++.++..++.+|..+. .... ++.|+.++.+. ..+..|+.+|..+
T Consensus 190 ~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~-~~~L~~~l~d~--~vr~~a~~aL~~i 248 (280)
T 1oyz_A 190 N--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRV-LSVLCDELKKN--TVYDDIIEAAGEL 248 (280)
T ss_dssp C--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGG-HHHHHHHHTSS--SCCHHHHHHHHHH
T ss_pred c--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhh-HHHHHHHhcCc--cHHHHHHHHHHhc
Confidence 2 246788999996 5689999999999885 2345 89999999764 3778888887765
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHH
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLA 666 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL 666 (715)
.. ..+++.|..++.+. ++...+.+...|
T Consensus 249 ~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 249 GD-------------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp CC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred Cc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 32 13478888888654 556666655444
No 93
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.1e-09 Score=88.62 Aligned_cols=53 Identities=21% Similarity=0.504 Sum_probs=47.1
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
..+.+++.||||++.+.+ ++++|||+||..||.+|+.. ..+||.|++++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 567788999999999999 88899999999999999985 889999999886544
No 94
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.76 E-value=3.1e-09 Score=81.55 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=41.4
Q ss_pred CCCcCccCcccccC----ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRD----PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~d----Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
++..||||++.+.+ +++++|||.||..||.+|+.. ..+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 36789999999976 777899999999999999998 489999998764
No 95
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.76 E-value=5.8e-09 Score=84.11 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCCCCcCccCccccc---CceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 287 SIPKDFCCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
...++..|+||++.+. +++.++|||.||..||.+|+.. +.+||.|+.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4456789999999884 4567899999999999999998 67899999887553
No 96
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.76 E-value=2.6e-09 Score=81.96 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=42.8
Q ss_pred CCCCCcCccCcccccC---ceeCC-CccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 288 IPKDFCCPIMLDLMRD---PVIIS-TGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~d---Pv~~~-cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|++++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3567899999999988 77786 9999999999999987 789999998763
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=1.9e-09 Score=98.67 Aligned_cols=55 Identities=22% Similarity=0.451 Sum_probs=48.5
Q ss_pred CCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 289 PKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
++++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 4689999999999999 88899999999999999987 6799999999887665443
No 98
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=2.4e-09 Score=82.63 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=41.0
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.+++.|+||++.+.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 457899999999999999999999999999883 6789999988754
No 99
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.72 E-value=4.4e-09 Score=89.83 Aligned_cols=51 Identities=18% Similarity=0.537 Sum_probs=44.4
Q ss_pred CCCCCCcCccCcccccC---ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 287 SIPKDFCCPIMLDLMRD---PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~d---Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
...++..|+||++.+.+ ++.++|||.||..||.+|+.. +.+||.|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34568899999999987 777899999999999999986 6799999988754
No 100
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.71 E-value=1.3e-07 Score=113.55 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=188.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh-
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk- 466 (715)
..++.++..+++.+.++|..|+..|..+....+.. +.. .+.++.|+.++.+++.+++..|+.+|.+++......
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~---~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA---LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH---HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 36777888888889999999999998877543321 111 256788888899999999999999999998755322
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhh-----------c------
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLR-----------L------ 528 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~-----------~------ 528 (715)
...+ .+.++.++..++.. +.+++..|+..+..++.....+..+.. ....+|.|+..+. +
T Consensus 251 ~~~l--~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 251 LPHM--HNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp GGGH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------
T ss_pred HHHH--HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 1112 35788888888876 889999999999999876544433321 1245677777662 2
Q ss_pred -----CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHH
Q 038217 529 -----GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVT 601 (715)
Q Consensus 529 -----~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~ 601 (715)
.+-..++.|+.+|..|+..... .++. .+++.+..++. +..+++.|+.+|.+++........-.-.+. ++
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~-l~ 403 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL-IP 403 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH-HH
T ss_pred cccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH-HH
Confidence 1123578888888888753321 1111 35667777775 458999999999999874432111112334 88
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 602 GLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 602 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.++..+.+.++.+|..|+.+|..++...+........ .++++.|+..+.+.+++++..|.+.+..+.+.
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8899999899999999999999998753211111111 24678888888888999999999877776643
No 101
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=5.1e-09 Score=85.96 Aligned_cols=50 Identities=12% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCCCcCccCcccccCc---eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDP---VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dP---v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..++..|+||++.+.++ +.++|||.||..||.+|+.. +.+||.|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45678999999999888 66799999999999999988 6799999988754
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.68 E-value=6.5e-08 Score=113.11 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=146.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccC--chh
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAV--HEY 508 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~ 508 (715)
..|.++++.|++.++..|..|+.+|.||+.+..++..+. ..|+|..++. +|... +.++|..|+++|.+|+.. .+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~-~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLL-REQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHH-HTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHH-HcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchH
Confidence 356667888999999999999999999998888888888 8888887765 56655 999999999999999865 467
Q ss_pred HHHHhcccCcHHHHHHHhhcCC---------------------hhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHh
Q 038217 509 KKKIADESGAVEALATLLRLGT---------------------PRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGA 566 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~---------------------~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~l 566 (715)
+..+.. .|++++|..+++... ......++.+|++||... +....+...|+++.|+.+
T Consensus 112 ~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 788888 899999999985311 123346788999999654 456677888999999999
Q ss_pred hC-----ChhHHHHHHHHHHHHhCC-cchHHHHhhhCC--cHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 567 LG-----HEGVAEEAAGALALIVRQ-PIGAAAVGEEEM--AVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 567 L~-----~~~~~~~al~~L~~La~~-~e~~~~i~~~g~--~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
|. ..++...++.+|..|+.. ++....+.+.+. +...+..+.. ++...+..++++|+|+..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 83 247999999999999885 445566666554 1223333333 455557788899999853
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.64 E-value=1.5e-08 Score=90.31 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=42.2
Q ss_pred CCCCcCccCcccccCce------------------eCCCccHhhHHHHHHHHHh----CCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRDPV------------------IISTGQTYDRRSIARWMEE----GHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv------------------~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~~ 338 (715)
+.+..||||++.|.+|+ +++|||.||+.||.+|+.. ...+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34569999999998876 6799999999999999973 36799999987754
No 104
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.63 E-value=3.4e-07 Score=100.75 Aligned_cols=272 Identities=11% Similarity=0.020 Sum_probs=187.0
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCch-
Q 038217 391 TAELLIQQLANG--SPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYDK- 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~~- 464 (715)
.++.|+..+.++ ++..+..|+..|..++++. +..-.... ...++.++.+|.+. +..++..|+.++.++...-.
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988 8999999999999999753 21100011 24677888888887 79999999999998754321
Q ss_pred hh-hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh--HHHHhccc-CcHHHHHHHhhcCChhHHHHHHHH
Q 038217 465 NK-SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY--KKKIADES-GAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 465 nk-~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~I~~~~-g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
+- .... ..-.++.+...+... +.++|..++.+|..++..... ...+ . +.++.++..+++.++.++..|+.+
T Consensus 208 ~~~~~~~-~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 208 NFDKESE-RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp HHTSHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hhhhhHH-HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 11 1111 122355566666665 889999999999988753321 1212 3 677888888888888999999999
Q ss_pred HHHhhcCCc------------------cHHHHHH---hCChHHHHHhhCC---------hhHHHHHHHHHHHHhCCcchH
Q 038217 541 LFNLSTHTD------------------NCVRMIE---AGAVTALVGALGH---------EGVAEEAAGALALIVRQPIGA 590 (715)
Q Consensus 541 L~nLs~~~~------------------n~~~iv~---aG~v~~Lv~lL~~---------~~~~~~al~~L~~La~~~e~~ 590 (715)
+.+++.... ....+++ ...+|.++..|.+ ..++..|..+|..|+..-.
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-- 360 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--
Confidence 888875420 0011111 2356777777741 2577888888888875322
Q ss_pred HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
..+.. .. ++.+...+.+.+...|+.|+.+|..++.+......... - ..+++.|+.++.+..+.++..|.+.|..+.
T Consensus 361 ~~~~~-~~-~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 361 DDIVP-HV-LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp TTHHH-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HH-HHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12222 23 67777788888899999999999999976532211111 1 458999999999999999999999888887
Q ss_pred Hhhh
Q 038217 671 RCEN 674 (715)
Q Consensus 671 ~~~~ 674 (715)
....
T Consensus 437 ~~~~ 440 (462)
T 1ibr_B 437 ELLP 440 (462)
T ss_dssp HHGG
T ss_pred Hhcc
Confidence 6543
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.61 E-value=4.5e-07 Score=105.97 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=145.9
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHH-HHhhcCChhHHHHHHHHHHHhhcC--Cc
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA-TLLRLGTPRGKKDAVTALFNLSTH--TD 549 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv-~LL~~~~~~~~~~A~~aL~nLs~~--~~ 549 (715)
...|.++++.|+++ +.+.|..|+++|.+|+.+...+..+.. .|+|..++ .+|.+.+..++..|+.+|.||+.. .+
T Consensus 33 ~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 33 EDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 44566788889998 999999999999999998888888877 78887765 567778899999999999999975 46
Q ss_pred cHHHHHHhCChHHHHHhhCC-----------------------hhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALGH-----------------------EGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~~-----------------------~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~ 605 (715)
.+..+++.|++++|..+|+. ..+.+.++.+|.+||.. .+....+.+.++ ++.|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~-l~~l~~ 189 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT-ILRLLF 189 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH-HHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc-HHHHHH
Confidence 88999999999999998730 03456788899999874 456677888888 999999
Q ss_pred Hhhc---CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC---cHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 606 MMRC---GTPRGKENAVAALLELCRSGGASATERVLKAPA---LVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 606 lL~~---~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g---~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.|.+ .+...+..|+.+|+.++..+ ....+.+.. .| +...|..+..+......-.+..+.+++
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 7654 24678999999999999987 455666666 45 345555555555544333333344443
No 106
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.61 E-value=1.8e-06 Score=98.08 Aligned_cols=262 Identities=14% Similarity=0.088 Sum_probs=186.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.|...+.+.+..++..|+..|..++...+.. ....-.+|.+..+..+++...+..|+.+|..++..-.. .+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~~- 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV- 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--HH-
Confidence 5566666667888999999999999999765432 12234567777777888899999999988888654332 12
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
....++.+..+++.. +.++|..|+.+|..++..-..... . ...+|.|..++.+++...+..|+.+|..++..-..
T Consensus 162 -~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 162 -KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp -HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred -HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 245677788888776 999999999999999764332221 2 57889999999888889999999999988764322
Q ss_pred HHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 551 CVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
. .....++|.+..+++| ..++..++.+|..++..... ....... ++.++.++.+.++..|..|+.+|..++..
T Consensus 237 ~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 237 E--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDL-VPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp H--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 1 2233477888888864 47888999999888753211 1222334 89999999988999999999999999876
Q ss_pred CCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 629 ~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.+......... ..+++.+..++.+.++.++..|...+..+
T Consensus 312 ~~~~~~~~~~~-~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 312 LSADCRENVIM-SQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp SCTTTHHHHHH-HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred hChhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 54332211112 34577777888877888777776554443
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.59 E-value=1.8e-06 Score=98.08 Aligned_cols=262 Identities=13% Similarity=0.110 Sum_probs=173.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..++.+...+.+.++.+|..|+..|..++...... ......+|.|..++.+++..++..|+.+|..++..-.. ..+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~ 239 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL 239 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-HHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 35667777778889999999999999998653321 22356789999999999999999999999998754322 122
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
....++.+..+++.. +..+|..|+.+|..++..-... ... ...++.++.++++.++.++..|+.+|..++..-.
T Consensus 240 --~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 240 --EALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE--ITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp --HHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH--HHH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred --HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc--cch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 245778888888776 8899999999999887532111 112 4679999999998888999999999999886432
Q ss_pred --cHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 550 --NCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 550 --n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
.+....-...+|.+..+++| ..++..++.+|..++..-. .... .... ++.+..++.+.++.+|..|+.+|..+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l-~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT-IEHL-LPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHT-HHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHH-HHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 22212234567777777763 4777777777777753211 1111 1223 67777777777777777777777766
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+...+... + . ..+++.|..++.+.+.+.+..+...+..+
T Consensus 391 ~~~~~~~~---~-~-~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 391 NEVIGIRQ---L-S-QSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHHSCHHH---H-H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCHHH---H-H-HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 65433211 1 1 12344455555544555555544444443
No 108
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.55 E-value=2.9e-06 Score=97.44 Aligned_cols=265 Identities=17% Similarity=0.144 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh-h
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-S 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-~ 467 (715)
+..++.+...|.+.++.+|..|+..+..+...+++. +.+.|.++.|..+|.+.|+.++.+|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 346677888999999999999999999999876653 334578999999999999999999999999998765422 1
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST- 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~- 546 (715)
.-. ..+.+..|+..+... ++-.+...+.+|..+...++.. . ...++.+..++++.++.++..|+.++..+..
T Consensus 197 ~~l-~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~--~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 197 LDL-NPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE--A---QSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCC-HHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH--H---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred hhc-cHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH--H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 111 346677888888776 7777777777777776443211 1 3467788888888888999999999999874
Q ss_pred ---CCccHHHHHHhCChHHHHHhhC-ChhHHHHHHHHHHHHhC-Ccch-------------------HHHH------hhh
Q 038217 547 ---HTDNCVRMIEAGAVTALVGALG-HEGVAEEAAGALALIVR-QPIG-------------------AAAV------GEE 596 (715)
Q Consensus 547 ---~~~n~~~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~La~-~~e~-------------------~~~i------~~~ 596 (715)
+++.... +-.++.+.|+.+++ ++.++..++..|..++. +++. +.++ ...
T Consensus 270 ~~~~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 270 LPKDSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp CCBTTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCS
T ss_pred cCCCHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCCh
Confidence 2333332 22345677776664 66777778888777753 1110 1111 122
Q ss_pred CC---cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH-HHHHH
Q 038217 597 EM---AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA-RVFQR 671 (715)
Q Consensus 597 g~---~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL-~~l~~ 671 (715)
.. .++.|..++.+.+...|..++.++..++...+. .. ..+++.|+.++....+.+...+...+ .+++.
T Consensus 349 ~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 349 ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-HH------HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 22 134445566667889999999999999987532 11 22477888988888777766655433 44443
No 109
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.55 E-value=1e-08 Score=83.93 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.+++.|+||++.+.+|++++|||+ ||..|+.+| ..||.|++++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4457899999999999999999999 999999998 789999988754
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.54 E-value=2.6e-08 Score=106.04 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
.....|+||++.+.+|+.++|||+||..||.+|+..+..+||.|+.++....
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3457999999999999999999999999999999966889999999886543
No 111
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.51 E-value=1.9e-08 Score=92.00 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=49.9
Q ss_pred CCCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 288 IPKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
.++.+.|+||++.+.+| +.++|||+||..||.+|+.. ..+||.|+.++...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 45688999999999988 88899999999999999998 6799999999988777664
No 112
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=7e-08 Score=80.39 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=40.5
Q ss_pred CCCcCccCcccccC--------------ceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 290 KDFCCPIMLDLMRD--------------PVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 290 ~~~~CpIc~~lm~d--------------Pv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
++-.|+||++.|.+ ++.+ +|||.|+..||.+|+.. +.+||.|++++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 35679999998877 4455 69999999999999988 67999999887543
No 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=7.5e-08 Score=78.94 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=40.5
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.+++.|+||++.+.+||+++|||+ ||..|+.+ ...||.|++++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3457799999999999999999999 99999964 4789999998755
No 114
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=6.8e-08 Score=82.93 Aligned_cols=66 Identities=11% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCCcCccCcccccCceeC---CCccHhhHHHHHHHHHh----C---CCCCCC--Cccc--cccCCCCccHHHHHHHHHHH
Q 038217 290 KDFCCPIMLDLMRDPVII---STGQTYDRRSIARWMEE----G---HRTCPK--TGQM--LVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~----~---~~~CP~--c~~~--l~~~~l~pn~~l~~~i~~~~ 355 (715)
+.+.||||++.+.+|+++ +|||.||+.|+.+|+.. | ...||. |+.. +....+ .+.....+++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 478999999999999865 69999999999999974 3 348999 9887 544322 1222234455554
Q ss_pred H
Q 038217 356 T 356 (715)
Q Consensus 356 ~ 356 (715)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 3
No 115
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.32 E-value=2.1e-07 Score=73.67 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCCCcCccCcccccCceeC--CCccH-hhHHHHHHHHHhCCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDPVII--STGQT-YDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~--~cght-fcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+++..|+||++-..+++.+ +|||. ||..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3466899999999999987 99999 899999999976 678999999874
No 116
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.31 E-value=1e-05 Score=92.81 Aligned_cols=258 Identities=17% Similarity=0.125 Sum_probs=181.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
....+++.+++.+...++-+.-.+..+++.+++.. .-++..+.+-|.++++.++..|+.+|.++.. ..+.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-----~~~~ 119 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-----DKIT 119 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-----GGGH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-----HHHH
Confidence 34566777889999988888888888887655442 2356788888999999999999999998862 1232
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
...++.+...|.+. ++.+|..|+.++..+...... .+.. .+.++.|..+|.+.++.++..|+.+|..++.....
T Consensus 120 --~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~--~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 120 --EYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ--MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp --HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC--CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred --HHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh--hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 45677888999887 999999999999999764332 1222 47889999999988899999999999999875432
Q ss_pred H-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 551 C-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 551 ~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
. ..-...+.+..|+..+. ++-.+...+.+|..++..++ .. .... ++.+..++++.++.++-.|+.++..+..
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~--~~~~-l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--RE--AQSI-CERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HH--HHHH-HHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HH--HHHH-HHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 1 00112234666676664 66666677777777764322 11 1123 6777778888889999999999999874
Q ss_pred cC--CHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 628 SG--GASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 628 ~~--~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.- .++....+.. .+.+.|+.++. +++.+|..|...+..+...
T Consensus 269 ~~~~~~~~~~~~~~--~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 269 LLPKDSDYYNMLLK--KLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SCCBTTBSHHHHHH--HTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH--HHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 21 1223333332 34778887764 7788888888766666543
No 117
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.27 E-value=7.2e-05 Score=73.33 Aligned_cols=217 Identities=13% Similarity=0.115 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk 466 (715)
.+..+..|.+.|...+..++.+|+..|..+.+.-+..-....=..+++.++.++++.|..+..+|+.+|..|-.+.+ ..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 44578899999999999999999999999998743333333334689999999999999999999999998866543 34
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
.... -++..+.++++++ +.-.++.|+..|..|...... .+.+..|..++.+.+.+.+..|+.+|.|++.
T Consensus 111 ~~y~---Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 111 KTFL---KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHH---HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHH---HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 4444 3567888899988 889999999999999443332 3455678888888889999999999999998
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc---hHHHHhhhCCcHHHHHH-Hh-hcCChHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI---GAAAVGEEEMAVTGLVG-MM-RCGTPRGKENAV 619 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e---~~~~i~~~g~~I~~Lv~-lL-~~~s~~~ke~A~ 619 (715)
..++...+ .+++.-+-.+|+ |+.+++.|+.+|..+.+.+= ....+.. +-..|+ +. ..|.|..+..|-
T Consensus 180 ~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~----~~~~v~~l~~~~~~~~~~~ka~ 253 (265)
T 3b2a_A 180 SSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK----ISRIVDGLVYREGAPIIRLKAK 253 (265)
T ss_dssp GCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH----HHHHHHHGGGCSSCHHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH----HHHHHHHHHHhcCChhHHHHHH
Confidence 65433211 234555666775 78999999999999977532 2233322 556665 33 458888888775
Q ss_pred HH
Q 038217 620 AA 621 (715)
Q Consensus 620 ~~ 621 (715)
.+
T Consensus 254 ~v 255 (265)
T 3b2a_A 254 KV 255 (265)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.26 E-value=3.4e-07 Score=72.23 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCcCccCcccccCceeC--CCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVII--STGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~--~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+..|+||++-..|++++ +|||. ||..|+.+|+.. ...||.|++++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 55899999999999988 99998 999999999977 5899999998753
No 119
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.26 E-value=1.6e-05 Score=94.67 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh--
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-- 466 (715)
..++.+...+.+.++..+..|+..+..++.... +.-.... ...++.|+..+.+.++.++..++++|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 455667777788899999999999999996532 2111111 257888999999999999999999999987543211
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc------hhHHHHhcccCcHHHHHHHhhcCC--hhHHHHH
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH------EYKKKIADESGAVEALATLLRLGT--PRGKKDA 537 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~------~~~~~I~~~~g~I~~Lv~LL~~~~--~~~~~~A 537 (715)
.... ...++.++..|+. +..++..|+.+|.+++..- .....+ ...++.|++++.+.+ +..+..+
T Consensus 448 ~~~~~--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 448 PQQHL--PGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp TTTTH--HHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred CHHHH--HHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHH
Confidence 1122 4577888888866 4789999999998886531 111111 346778888887533 6788889
Q ss_pred HHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC-----------------ChhHHHHHHHHHHHHhCC-cchHHHHhhhCC
Q 038217 538 VTALFNLSTHTD-NCVRMIEAGAVTALVGALG-----------------HEGVAEEAAGALALIVRQ-PIGAAAVGEEEM 598 (715)
Q Consensus 538 ~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~-----------------~~~~~~~al~~L~~La~~-~e~~~~i~~~g~ 598 (715)
+.+|..+..... .....+. ..++.++..+. ...++..++.+|.+++.. +..-... ...
T Consensus 521 ~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~ 597 (861)
T 2bpt_A 521 FSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADM 597 (861)
T ss_dssp HHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHH
T ss_pred HHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHH
Confidence 999999876433 2222222 35566666553 124566788888888653 2211111 112
Q ss_pred cHHHHHHHhhcCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 599 AVTGLVGMMRCGTP-RGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.++.++.++...+. ..++.++.++..++...+......+ ..+++.|...+.+..+.++..|..++..+.+
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 36777788887666 8899999999888876544433222 2368888888887788888888887776554
No 120
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.24 E-value=5.1e-07 Score=78.95 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=39.8
Q ss_pred CCcCccCcccccCc-----------------e-eCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDP-----------------V-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dP-----------------v-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+-.|+||++.|.+| + .++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 56899999999877 3 3599999999999999987 889999998754
No 121
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.18 E-value=2.7e-05 Score=92.98 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=173.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh--
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-- 466 (715)
..++.+...+.+.++..|..|+..|..++.... +.-... -.+.+|.|+..|.+.++.++..|+++|.+++..-...
T Consensus 366 ~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc
Confidence 456677777888899999999999999986533 222121 2357899999999999999999999999998654321
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh------------HHHHhc-ccCcHHHHHHHhhcC---
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY------------KKKIAD-ESGAVEALATLLRLG--- 529 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~------------~~~I~~-~~g~I~~Lv~LL~~~--- 529 (715)
.... ...++.++..|.. +..++..|+++|.+++..-.. ...+.. ....++.|+.++...
T Consensus 445 ~~~~l--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVYL--APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTTH--HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred cHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 1222 4677888888866 478899999999998753210 000100 024677777777653
Q ss_pred ChhHHHHHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC-----------C------hhHHHHHHHHHHHHhCCcc-hH
Q 038217 530 TPRGKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGALG-----------H------EGVAEEAAGALALIVRQPI-GA 590 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~-----------~------~~~~~~al~~L~~La~~~e-~~ 590 (715)
+...+..++.+|..|..... .....+ ...++.++..+. + ++++..++.+|..++..-. ..
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 24667778888888875432 222222 234555555442 1 2456778888888876433 11
Q ss_pred HHHhhhCCcHHHHHHHhhcCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGT--PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLAR 667 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~ 667 (715)
..-.-.. .++.++.++.+.+ ...++.++.++..++...+......+ . .+++.|...+.+. .+.++..|..++.
T Consensus 600 ~~~~~~~-l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~--~~~~~l~~~l~~~~~~~vr~~a~~~l~ 675 (876)
T 1qgr_A 600 ALQISDV-VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-E--AFKPFLGIGLKNYAEYQVCLAAVGLVG 675 (876)
T ss_dssp HHTTHHH-HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-H--HHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH-H--HHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 1111122 3677778777653 47899999999998875433222112 1 2578888888876 7888888887776
Q ss_pred HHHH
Q 038217 668 VFQR 671 (715)
Q Consensus 668 ~l~~ 671 (715)
.+.+
T Consensus 676 ~l~~ 679 (876)
T 1qgr_A 676 DLCR 679 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 122
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.14 E-value=0.00013 Score=87.10 Aligned_cols=270 Identities=11% Similarity=0.032 Sum_probs=183.2
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCc-
Q 038217 391 TAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYD- 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~- 463 (715)
.++.|+..+.++ ++..+..++..+..++..-.. ..+.. ...++.+...+.++ +..++..|+.+|.++...-
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678888999888 899999999999999865311 11211 24566777777776 6899999999999886432
Q ss_pred hh-hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 464 KN-KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 464 ~n-k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.+ ..... ....++.+...+... +.++|..|+.+|..+..... ....+. ...++.++..+.+.++.++..|+.+
T Consensus 207 ~~~~~~~~-~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 207 ANFDKESE-RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp HHHTSHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHhHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHHHH
Confidence 11 11111 123566677777666 88999999999998875322 223332 2678888888877778889999999
Q ss_pred HHHhhcCCc---------------------cHHHHHHhCChHHHHHhhC---------ChhHHHHHHHHHHHHhCCcchH
Q 038217 541 LFNLSTHTD---------------------NCVRMIEAGAVTALVGALG---------HEGVAEEAAGALALIVRQPIGA 590 (715)
Q Consensus 541 L~nLs~~~~---------------------n~~~iv~aG~v~~Lv~lL~---------~~~~~~~al~~L~~La~~~e~~ 590 (715)
+.+++.... ...+-.-...++.++..|. +..++..|..+|..++..-.
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-- 360 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--
Confidence 888875320 0000001235677777774 12577788888888865321
Q ss_pred HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
..++. .. ++.+...+.+.+...|+.|+.+|..++.+.+.+...... .++++.|+..+.+..+.++..|.+.+..+.
T Consensus 361 ~~~~~-~~-l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 361 DDIVP-HV-LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp GGGHH-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HhhHH-HH-HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 11221 22 566667777788999999999999999876533222322 346899999999999999999998888777
Q ss_pred Hh
Q 038217 671 RC 672 (715)
Q Consensus 671 ~~ 672 (715)
..
T Consensus 437 ~~ 438 (876)
T 1qgr_A 437 EL 438 (876)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 123
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.13 E-value=4.6e-05 Score=87.92 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
...+..|.+.|++.++..+..|++.|.++.. ++ +. ...++.+.++|.+.++.++..|+.++.++..... .
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~ 175 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---E 175 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---G
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---H
Confidence 3577889999999999999999999998873 32 22 3567889999999999999999999999976432 2
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc---------------CChhH
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL---------------GTPRG 533 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~---------------~~~~~ 533 (715)
++ .+.++.+..+|... +..++..|+.+|..++..+... .......++.|+++|.+ .++-.
T Consensus 176 ~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 176 LM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDM--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp GG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHH--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred HH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 33 36777778888776 8899999999999998765321 11113578888877753 24556
Q ss_pred HHHHHHHHHHhhcC
Q 038217 534 KKDAVTALFNLSTH 547 (715)
Q Consensus 534 ~~~A~~aL~nLs~~ 547 (715)
+...+.+|..++..
T Consensus 251 q~~il~~L~~l~~~ 264 (618)
T 1w63_A 251 QVRILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCC
Confidence 66677777777654
No 124
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.13 E-value=0.00011 Score=84.78 Aligned_cols=250 Identities=14% Similarity=0.031 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+..++.+...|.+.++.+|..|+..+.++...+++.. .+.++.+..+|.+.|+.++..|+.+|..++..+.....
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3467888888999999999999999999998877643 27888899999999999999999999999876432111
Q ss_pred hhhhcCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc------
Q 038217 469 IMDEEGCLGSIVKVLRF--------------GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL------ 528 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~--------------~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~------ 528 (715)
. -...++.++.+|.. -.++-.+...+.+|..+...+.... ...++.|..++..
T Consensus 216 ~--~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 216 H--FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp H--HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred H--HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 2 23678888887763 1256677788888888876543211 2344455555431
Q ss_pred CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHH
Q 038217 529 GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGM 606 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~l 606 (715)
.+..+.-.|+.++.++...+. +.. .++..|..+|. ++.++..|+..|..++.. ...+++ .- ...++..
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~-~~-~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ-RH-RSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG-GG-HHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH-HH-HHHHHHH
Confidence 123556677777777644221 111 34666777664 557777777777777542 112222 12 4566666
Q ss_pred hhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 607 MRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 607 L~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+.+.+..+|..|+.+|..++.... . ..+ +..|...+.+.++..++.+...+..+
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~n--v-~~i------v~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNN--I-RGM------MKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSS--T-HHH------HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHccccc--H-HHH------HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666677777777777777776532 1 111 23345555555555555554443333
No 125
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.10 E-value=3.7e-07 Score=75.48 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
+.++..|+||++.+.+|+.++|||. ||..|+.+| ..||.|+.++...
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 3446799999999999999999999 999999987 3899999987643
No 126
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.06 E-value=0.00013 Score=86.71 Aligned_cols=270 Identities=9% Similarity=0.069 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCh-hhHHHH--HHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCc-
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLAKTGK-ENRAFI--AKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYD- 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~-~~r~~i--~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~- 463 (715)
.++.|+..+.++ ++..+..++..+..+++.-. +.+ .+ .....++.++..|.+. +..++..|+.+|.++...-
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 688999999988 89999999999999986432 111 00 0113456667777776 8999999999998874321
Q ss_pred hh-hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 464 KN-KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 464 ~n-k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.+ ..... ....++.+...+.++ +.+.|..|+.+|..+..... ....+. ...++.+...+.+.++.++..|+.+
T Consensus 214 ~~~~~~~~-~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 214 NNMEREGE-RNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp HHHTSHHH-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHccChhH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 11111 123566666777776 89999999999988875322 222221 1566777777777788999999999
Q ss_pred HHHhhcCCcc------------------HHHHHHhCChHHHHHhhCC---------hhHHHHHHHHHHHHhCCcchHHHH
Q 038217 541 LFNLSTHTDN------------------CVRMIEAGAVTALVGALGH---------EGVAEEAAGALALIVRQPIGAAAV 593 (715)
Q Consensus 541 L~nLs~~~~n------------------~~~iv~aG~v~~Lv~lL~~---------~~~~~~al~~L~~La~~~e~~~~i 593 (715)
+..++..... -...+ ..+++.++..|.+ ..++..+..+|..++..-. ..+
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~ 366 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH
Confidence 9888764211 01111 3467888888852 2577788888888875321 111
Q ss_pred hhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 594 GEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 594 ~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.. . .++.+.+.+.+.+...|+.|+.+|..++...+......... .+++.|+..+.+.++.++..|.+++..+...
T Consensus 367 ~~-~-l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 367 LE-P-VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HH-H-HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HH-H-HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 11 1 25566667777888999999999999997654232233333 4688899999999999999888877766654
No 127
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.04 E-value=0.00011 Score=80.56 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhH-HHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 390 ATAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENR-AFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
..++.++..|.+. +.++|..|+..+..+...-..+- ......-.++.|..++.+.+..++..++.+|..++......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888877 78999999999988653211110 01111113666777778889999999999999997654321
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH------------------Hhc--ccCcHHHHHHH
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK------------------IAD--ESGAVEALATL 525 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~------------------I~~--~~g~I~~Lv~L 525 (715)
...+ ..+.++.++..++.. +.+++..|+..+..++........ +.. ....+|.|++.
T Consensus 252 ~~~~~-~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 252 METYM-GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp CTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 1222 127788888888776 889999999988888654211000 000 02356777777
Q ss_pred hhcC-------ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc--hHHHHh
Q 038217 526 LRLG-------TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI--GAAAVG 594 (715)
Q Consensus 526 L~~~-------~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e--~~~~i~ 594 (715)
+... +...+..|+.+|..|+..-.. .++ ..+++.+...+. +..++..|+.+|..++.... .-....
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7532 236788899999888764331 222 245677777776 45889999999999986322 111111
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG 630 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 630 (715)
...++.|+..+.+.++.+|..|+.+|.+++...+
T Consensus 407 --~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp --TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 3348999999998999999999999999997643
No 128
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.03 E-value=6.3e-07 Score=94.99 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=42.6
Q ss_pred CCCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.+.+++.||||++.+.+||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45678999999999999999999999 999999988 689999998754
No 129
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.97 E-value=1.9e-05 Score=98.42 Aligned_cols=267 Identities=11% Similarity=0.066 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..+..|+..+.+.+.+.|..|...|.+..+.+...-..-.....++.|++.|.+.++.++..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 3577888999999999999999999887654311000001124577888889999999999999999999764322 11
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-------HHHhcccCcHHHHHHHhh-cCChhHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-------KKIADESGAVEALATLLR-LGTPRGKKDAVTAL 541 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------~~I~~~~g~I~~Lv~LL~-~~~~~~~~~A~~aL 541 (715)
. ...++.++..|.++ +..+|..|+.+|..++..-... ... ....+|.|+..+. +++...+..|+.+|
T Consensus 84 ~--~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp H--HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1 34667778888776 7788998888888776422111 111 1468899999998 47788999999999
Q ss_pred HHhhcCC-c-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC-ChHHHH
Q 038217 542 FNLSTHT-D-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG-TPRGKE 616 (715)
Q Consensus 542 ~nLs~~~-~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke 616 (715)
..++... . .... -...++.|+..|. +..++..|+.+|..++..... .+. ...++.++..+... +...+.
T Consensus 159 ~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~ 232 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTR 232 (1230)
T ss_dssp HHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCT
T ss_pred HHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHH
Confidence 9988421 1 1111 1234566666665 458999999999999864322 122 23378888877654 345677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 617 NAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 617 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.|+.++..++...+..... .-..+++.++..+++.++.+++.|...+..+.+.
T Consensus 233 ~a~~~l~~l~~~~~~~~~~---~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGHRIGE---YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp THHHHHHHHHHHSSGGGTT---SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7888888888765542211 1145899999999888888888888777766553
No 130
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=3.8e-06 Score=67.23 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=40.4
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
-.++..|+||++...+++.++|||. ||..|+.+ ...||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999984 5789999998754
No 131
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.95 E-value=0.00018 Score=74.86 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=126.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..++.+|.+++.+.++.++..|..+...+.+.-..|+..||+..|++.....+..+|.+++++|.+|-.+..+-..++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 56778899999999999999999999554667888888999999999999999999999999999999999988887777
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcc---------cCcHHHHHHHhh---cCChhHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADE---------SGAVEALATLLR---LGTPRGKKDA 537 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~---------~g~I~~Lv~LL~---~~~~~~~~~A 537 (715)
.....|..++.++.+. +..+.+.|+.+|..+....+ +...+... .--...|+.+|+ .++.+.+.+|
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 5677899999999875 88999999999999977654 22222110 113679999997 5678889999
Q ss_pred HHHHHHhhc
Q 038217 538 VTALFNLST 546 (715)
Q Consensus 538 ~~aL~nLs~ 546 (715)
++.|-.+-.
T Consensus 278 mtLIN~lL~ 286 (339)
T 3dad_A 278 VTLINKTLA 286 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888766644
No 132
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.92 E-value=1.5e-06 Score=77.15 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=0.4
Q ss_pred CCcCccCcccccCce-----------------e-CCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDPV-----------------I-ISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv-----------------~-~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+-.|+||++.|.+|. . .+|||.|+..||.+|+.. +.+||.|++++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 348999999998742 2 389999999999999998 789999998753
No 133
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=7.7e-06 Score=67.58 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=43.2
Q ss_pred CCCCCCcCccCcccc--cCceeCCCc-----cHhhHHHHHHHHHhC-CCCCCCCccccccC
Q 038217 287 SIPKDFCCPIMLDLM--RDPVIISTG-----QTYDRRSIARWMEEG-HRTCPKTGQMLVHD 339 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm--~dPv~~~cg-----htfcr~cI~~w~~~~-~~~CP~c~~~l~~~ 339 (715)
...++..|+||++-+ .+|++++|+ |.|...||.+|+... ..+||.|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345567899999776 468888996 999999999999873 47999999987643
No 134
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.84 E-value=0.00099 Score=65.37 Aligned_cols=222 Identities=13% Similarity=0.067 Sum_probs=163.5
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCc--hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-h
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD--KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-Y 508 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~--~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~ 508 (715)
+.+..|..||...|+.++.+|+.+|-.+-..- .-+..++ ...++.++.++++. +..+.-.|+.+|..|-.+-+ .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCC
Confidence 35778899999999999999999999997763 3344444 67899999999887 99999999999998865443 3
Q ss_pred HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
..... ..+.+|.+++.++++-....|+..|..|..-...+ +++..+..+++ |..++..++.+|.+++..
T Consensus 110 ~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 110 SKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 44442 36778999999899999999999999993322222 24556777775 779999999999999874
Q ss_pred cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHhcCCcHHHHHHHh-hcCCHHHHHHHHH
Q 038217 587 PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG-GASATERVLKAPALVGLLQALL-FTGTKRARRKAAS 664 (715)
Q Consensus 587 ~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll-~s~~~~~k~~A~~ 664 (715)
.+....+ .+. +.-+-+++++.++..++.|+.+|..+.+.. .++....+.. +....-++. ..|.|..+.||..
T Consensus 181 S~D~~i~--~~I-~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 181 SADSGHL--TLI-LDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK---ISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp CSSCCCG--GGT-TTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH---HHHHHHHGGGCSSCHHHHHHHHH
T ss_pred cCCHHHH--HHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH---HHHHHHHHHHhcCChhHHHHHHH
Confidence 4322211 122 345667888889999999999999988764 2233334433 244444566 6789999999988
Q ss_pred HHHHHHH
Q 038217 665 LARVFQR 671 (715)
Q Consensus 665 lL~~l~~ 671 (715)
....+..
T Consensus 255 v~~~le~ 261 (265)
T 3b2a_A 255 VSDLIDS 261 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766643
No 135
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.83 E-value=0.00015 Score=72.92 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=134.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhccCc--hhHH
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLR-FGLTTEARENAAATLFSLSAVH--EYKK 510 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~--~~~~ 510 (715)
+.+...+.+.+...+..|+..|..+... +.....- -...++.|...|. .. +..++..|+.+|..|+..- ....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~--~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--YGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC--CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC--HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3477888899999999999999998754 2211111 1245777888884 65 8999999999999998522 1222
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC--
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-- 586 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-- 586 (715)
.+ ...++.|+..+.+.+..++..|..+|.++...... . ..++.+...|+ ++.++..++.+|..+...
T Consensus 95 ~~---~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA---SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH---HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 35789999999988899999999999999875431 1 25677788886 568999999999996543
Q ss_pred cch-HHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCH
Q 038217 587 PIG-AAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 587 ~e~-~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
++. -...+ ..+++.|+.++.+..+++|..|..+|..++..-|+
T Consensus 166 ~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 166 PTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 221 11112 23489999999989999999999999999876544
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.81 E-value=0.00011 Score=74.02 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=132.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH-HHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchh-hhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENR-AFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKN-KSRIM 470 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~n-k~~I~ 470 (715)
.+.+.+.+.+|..|..|+..|..+...++..- ..+ ...++.|..+|. +.+..++..|+.+|..|+..-.. -...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~- 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY- 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence 35678889999999999999999997633210 001 134677888884 89999999999999999853321 1122
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC--
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-- 548 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-- 548 (715)
....++.|+..+... +..+|..|..+|..+...... ...++.|...+++.++.++..++..|..+....
T Consensus 96 -~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 -ASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp -HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred -HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 245788999998887 889999999999999764321 246778888898888999999999999965432
Q ss_pred c-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 549 D-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 549 ~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
+ .-...+. ..+|.|+.+|. +..++..|..+|..++.
T Consensus 167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 1122222 57888999996 45899999999988864
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.71 E-value=0.00097 Score=72.68 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=152.6
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcC--ChHHHHHhhcc---------------C--CHHHHHHHH
Q 038217 394 LLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAG--AIPHLRNLLST---------------H--NPVAQENSV 453 (715)
Q Consensus 394 ~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s---------------~--d~~~~~~A~ 453 (715)
.++..|.. ++.+.+.-++..|..+... ++.|..+.+.+ .+|+++.++.. + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45566665 3456666789999999964 89999998653 47777655441 1 356799999
Q ss_pred HHHhhhhcCchhhhhhhhhcCcH--HHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhH---H-HHhcccCcHHHHHHH
Q 038217 454 TAMLNLSIYDKNKSRIMDEEGCL--GSIVKVLRFGLTTEARENAAATLFSLSAVH--EYK---K-KIADESGAVEALATL 525 (715)
Q Consensus 454 ~aL~nLs~~~~nk~~I~~~~g~i--~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~---~-~I~~~~g~I~~Lv~L 525 (715)
-+++-|+.+++-...+. ..+.. ..|+.+++....+.+...+.++|.||.... ... . .+.. .++ +.+++.
T Consensus 250 l~iWlLSF~~~~~~~l~-~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~ 326 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQS 326 (480)
T ss_dssp HHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHH
T ss_pred HHHHHHHcCHHHHHHHH-hcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHH
Confidence 99999999988777777 66644 677888887657888999999999998754 111 2 2222 344 556666
Q ss_pred hhc---CChhHHHHHHHH-------HHHhhcCC------------------------ccHHHHHHh--CChHHHHHhhC-
Q 038217 526 LRL---GTPRGKKDAVTA-------LFNLSTHT------------------------DNCVRMIEA--GAVTALVGALG- 568 (715)
Q Consensus 526 L~~---~~~~~~~~A~~a-------L~nLs~~~------------------------~n~~~iv~a--G~v~~Lv~lL~- 568 (715)
|.. .+++...+--.. ...|++.+ +|..++-+. ..+..|+++|.
T Consensus 327 L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~ 406 (480)
T 1ho8_A 327 LSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQA 406 (480)
T ss_dssp HHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 654 334443332211 11122111 122222221 24677888885
Q ss_pred -----------ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 569 -----------HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 569 -----------~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
|+.+..-|+.=+..++. .|+||..+-+.|+ =..++++|.+.++++|.+|+.++..+-.
T Consensus 407 ~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~-K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 407 KVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG-KADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH-HHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred hccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc-HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 23455556666777777 6999998888888 7788889999999999999998876654
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.61 E-value=1.2e-05 Score=73.08 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.|+..|++.++..+..|+..|..+.. ..++.|+.+|+++++.++..|+.+|.++.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~---------- 70 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ---------- 70 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC----------
Confidence 56788889998888888888887754431 13799999999999999999999998875
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
...+++.|+..|+.. +..+|..|+.+|..+. . ..+++.|+.++++.++.++..|+.+|.+
T Consensus 71 -~~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 71 -DERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 234688899999887 8999999999998874 2 5678999999988888999999888754
No 139
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.60 E-value=0.0041 Score=71.53 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh--ccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL--STHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
...+..+.+.|++.++..+.-|++.|.++.. ++ +++ ..++.+.++| .+.++-++..|+.++.++.....
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-- 180 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-- 180 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--
Confidence 3467788889999999999999999988863 33 232 4678889999 88999999999999999986432
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
..+. ..+.++.+..+|... +..++.+|+.+|..++..+
T Consensus 181 ~~~~-~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 181 DLVP-MGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp GGCC-CCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHC
T ss_pred hhcC-chhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhC
Confidence 2332 358999999999776 8899999999999987643
No 140
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.57 E-value=0.00022 Score=88.74 Aligned_cols=227 Identities=12% Similarity=0.090 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh---
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK--- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk--- 466 (715)
..++.|+..|.+.+++.|..|+..|..++..-+. ..+ ...++.|+..|.+++..++..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4678888999999999999999999999865433 111 235678888888888899999999998886533211
Q ss_pred ----hhhhhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHH
Q 038217 467 ----SRIMDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGTPRGKKDAVT 539 (715)
Q Consensus 467 ----~~I~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~ 539 (715)
... ....++.|+..+.. + +...+..|+.+|..++... .....+ ...++.|+..+.+.++.+++.|+.
T Consensus 124 ~~~~~~~--~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 124 SALAANV--CKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp CCTHHHH--HHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred cchHHHH--HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHHHHHHHH
Confidence 112 35678899999984 5 8899999999999887421 111111 346677788888778899999999
Q ss_pred HHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHh-hhCCcHHHHHHHhhcCChHHH
Q 038217 540 ALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVG-EEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 540 aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~-~~g~~I~~Lv~lL~~~s~~~k 615 (715)
+|..++...+.. + -...++.++..|. +...+..++.++..++.... . .+. -....++.++..+...++..|
T Consensus 198 al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 198 ALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999998754432 1 1235777777774 22445556667766654211 1 111 112347888888888888999
Q ss_pred HHHHHHHHHHHhcCCH
Q 038217 616 ENAVAALLELCRSGGA 631 (715)
Q Consensus 616 e~A~~~L~~L~~~~~~ 631 (715)
+.|+.++..++...++
T Consensus 273 ~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHChH
Confidence 9999999998886544
No 141
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.56 E-value=0.0069 Score=69.65 Aligned_cols=250 Identities=12% Similarity=0.109 Sum_probs=162.9
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 390 ATAELLIQQL--ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L--~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..++.+...| .+.++.++..|+-.+.++.+.+++.- ...+.++.|..+|.+.|+.++.+|+.+|..++..+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4566777888 78899999999999999998776542 2248999999999999999999999999999765432
Q ss_pred hhhhhcCcHHHHHHHHh----cC-C-----------CHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhc-
Q 038217 468 RIMDEEGCLGSIVKVLR----FG-L-----------TTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRL- 528 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~----~~-~-----------~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~- 528 (715)
.+ ...++.++..|. .+ . ++=.+.....+|..+...+ +.+..+.+ .++.++..+.+
T Consensus 221 ~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~---~L~~il~~~~~~ 294 (621)
T 2vgl_A 221 EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE---CLETILNKAQEP 294 (621)
T ss_dssp HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH---HHHHHHHHHHSC
T ss_pred HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHhhccC
Confidence 11 234455554443 22 1 3456777777777776532 23333322 34444433211
Q ss_pred --------CC--hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhh
Q 038217 529 --------GT--PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEE 596 (715)
Q Consensus 529 --------~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~ 596 (715)
.+ ..+.-.|+.++..+...++-.. .++..|..+|. ++.++-.++..|..++........+ +
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~- 367 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K- 367 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-
Confidence 12 2556677888888763222222 35677888884 6789999999999997643222222 2
Q ss_pred CCcHHHHHHHhh-cCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 597 EMAVTGLVGMMR-CGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 597 g~~I~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.- ...++..+. +.+..+|..|+.+|..++.. .. ...+ +..|...+.+.+...++.+...+.
T Consensus 368 ~~-~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~N-v~~I------v~eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 368 TH-IETVINALKTERDVSVRQRAVDLLYAMCDR--SN-AQQI------VAEMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp TT-HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HH-HHHH------HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hh-HHHH------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22 677888888 78889999999999999865 22 2222 334666666666666655554333
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.54 E-value=0.0055 Score=73.18 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh---hhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK---ENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKN 465 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~---~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~n 465 (715)
+.+..|.+.+..-... ..|+..+..++.... ..-..++ +.+|.++..+.+++..++..|-.++..+... +.+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 3556666666533222 678888888885431 1222222 5788888888888889998888888777432 221
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
.. ..++|.|+..|+++..+..+..|+.++..|+... ...++. -+..||.+...+.+-.+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 11 3468999999987657999999999999998643 233332 256888888888777789999999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
|..-+|+.. ...||.|+..+.+++-+.+++..|..-..-.+.-...+. .++|.|.+-|...+...++.++-+.-|
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n 277 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDN 277 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcc
Confidence 886666642 356899999998876677777666654332222211111 115666666666688889999999999
Q ss_pred HHhcCCHH-HHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhhh
Q 038217 625 LCRSGGAS-ATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 625 L~~~~~~~-~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~~~~ 674 (715)
+|+.-.+. ....+ - ..++|.|......- .|.++..|...+..|.+...
T Consensus 278 ~~~lv~~~~~~~~f-~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 278 MCKLVEDPQVIAPF-L-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHTTCCCHHHHHHH-H-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHhhh-h-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 99865433 33333 3 56788888877654 99999999999999987644
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.41 E-value=0.0033 Score=65.31 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=118.9
Q ss_pred HHHHHhhcCChhHHHHHHHHHHH-hhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 521 ALATLLRLGTPRGKKDAVTALFN-LSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 521 ~Lv~LL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
.+++-|.+++.+.++.++.-|.. ++.+.+....++..+++..|+.... ++..+..++.+|.+|-.+..|...++.+.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34445556777888888888888 6677889999999999999999995 77999999999999999999999998877
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHh---------cCCcHHHHHHHhh---cCCHHHHHHHHHH
Q 038217 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLK---------APALVGLLQALLF---TGTKRARRKAASL 665 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~---------~~g~i~~L~~Ll~---s~~~~~k~~A~~l 665 (715)
.+|..|+.++.+....+...|+++|..+|..++.. ...+.+ +..-.+.|+.+++ +++...+.+|-.|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 77999999999888889999999999999887322 112221 1114678999997 6788999998887
Q ss_pred HHHH
Q 038217 666 ARVF 669 (715)
Q Consensus 666 L~~l 669 (715)
++-+
T Consensus 281 IN~l 284 (339)
T 3dad_A 281 INKT 284 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 144
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.36 E-value=4.2e-05 Score=69.27 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=87.4
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
...++.|+.+|+++++.++..|+.+|.++.. ..++.|+..|++. +..+|..|+.+|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC------
Confidence 4678889999999999999988888876531 1368899999987 99999999999987752
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALAL 582 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~ 582 (715)
..+++.|+.++.+.++.++..|+.+|.++.. ..+++.|+.+++ ++.++..|..+|..
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999998752 246888999996 45788888877754
No 145
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00096 Score=67.56 Aligned_cols=187 Identities=7% Similarity=0.080 Sum_probs=129.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHhhChhhHHHHHH-cCChHHHHHhh-ccCCHHHHHHHHHHHhhhhcCch--hhh-h
Q 038217 395 LIQQLANGSPRAKTVAAREIRL-LAKTGKENRAFIAK-AGAIPHLRNLL-STHNPVAQENSVTAMLNLSIYDK--NKS-R 468 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~-La~~~~~~r~~i~~-~G~i~~Lv~lL-~s~d~~~~~~A~~aL~nLs~~~~--nk~-~ 468 (715)
+-..+.|.+|..|..|+..|.. ++..++.....-.+ ...+..|.+.| +..+..++..|+.+|..|+..-. .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3467889999999999999999 87543321100001 13466777788 67899999999999999984322 111 2
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
. ..-.++.++..++.. ...++..+..+|..+...- ..... ..-...++.|+..|++.++..+..++.+|..+...
T Consensus 101 y--~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 Y--VSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp H--HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2 234788999998876 7888888888888776522 11100 00124677888889888899999999999988764
Q ss_pred CccH-HHH---HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 548 TDNC-VRM---IEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 548 ~~n~-~~i---v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
.... ..+ +....+|.|..++. +..++..|..+|..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3321 222 22467888999997 45899999999988863
No 146
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00022 Score=57.66 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=38.8
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHhC-CCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEG-HRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~-~~~CP~c~~~l~~ 338 (715)
--.|.||.+++..-..- .|+|.|-..||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45899999988744433 799999999999999863 3899999987643
No 147
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0029 Score=64.03 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=129.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hccC-chhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhcCC---ccHH
Q 038217 479 IVKVLRFGLTTEARENAAATLFS-LSAV-HEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLSTHT---DNCV 552 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~~~---~n~~ 552 (715)
+-..+.+. ++..|..|+..|.. +... .+.....+.....+..|.+.+ ++.+..++..|+.+|..|+..- ....
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556676 99999999999998 7632 221100111124577888888 6778888999999999998522 2210
Q ss_pred HHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhh-hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 553 RMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGE-EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
.... -++|.++..++| ..+++.+..+|..++..-+- ..... -..+++.|...|.+.++..|+.++.+|..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1111 268889999974 57888888888888752211 11100 1124788888898889999999999999988776
Q ss_pred CH--HHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 630 GA--SATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 630 ~~--~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
+. ........ ..+++.|..++.+..+.+|..|...+..+.+.
T Consensus 178 ~~~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 178 KDGYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSCSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 42 22222331 35799999999999999999999888777653
No 148
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.15 E-value=0.028 Score=66.55 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=123.7
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 433 AIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
+++.|..+|.+++..+.+.|+.+|..+-....| ..++..|+..+....+..++..++-.|..+..
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~-------- 537 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAVGLALINY-------- 537 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------
Confidence 466778888777776677777777665433332 23455666665554477788888777776643
Q ss_pred hcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcc
Q 038217 513 ADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e 588 (715)
+. ...++.+++.|.. .++-++..|+.++..-.....|.. +|+.|++.+. ++.++..|+..|..++...+
T Consensus 538 g~-~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 538 GR-QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TC-GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred CC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 22 5678888888875 445666666666655445555543 3666777763 56888889988888765332
Q ss_pred hHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS 664 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~ 664 (715)
.. ++.+++ +++++++.+|..|+.+|..+|.+++.. . ++..|..++++.++.+++.|..
T Consensus 611 --------e~-v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---~------aid~L~~L~~D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 611 --------TT-VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---S------AIDVLDPLTKDPVDFVRQAAMI 669 (963)
T ss_dssp --------SS-HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH---H------HHHHHHHHHTCSSHHHHHHHHH
T ss_pred --------HH-HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH---H------HHHHHHHHccCCCHHHHHHHHH
Confidence 34 677777 455688999999999999998876531 1 1333455555555555555543
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.12 E-value=0.09 Score=57.31 Aligned_cols=221 Identities=10% Similarity=0.113 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhhhcC-cHHHHHHHHhc---------------C-CCHHHHHHHHHHHHHhccCch
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEG-CLGSIVKVLRF---------------G-LTTEARENAAATLFSLSAVHE 507 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g-~i~~Lv~lL~~---------------~-~~~e~~~~Aa~~L~~Ls~~~~ 507 (715)
+...+.-++.+|..|...++.|..+....| .++.++.+++. + .....+.+++-+++-||-.++
T Consensus 181 ~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 345566678888888888888888872222 46777665542 1 124567889999999999988
Q ss_pred hHHHHhcccCcH--HHHHHHhhcCC-hhHHHHHHHHHHHhhcCC-c----cHHHHHHhCChHHHHHhhC-----ChhHHH
Q 038217 508 YKKKIADESGAV--EALATLLRLGT-PRGKKDAVTALFNLSTHT-D----NCVRMIEAGAVTALVGALG-----HEGVAE 574 (715)
Q Consensus 508 ~~~~I~~~~g~I--~~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~-~----n~~~iv~aG~v~~Lv~lL~-----~~~~~~ 574 (715)
....+.. .+.+ +.|+++++... +.+..-++.+|.||.... + ....++-.|.+++++..|. |+++.+
T Consensus 261 ~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHH
Confidence 7777766 5543 67778787644 688889999999998754 1 2232332233355666662 665544
Q ss_pred HHHHHHHHHh-------C---------------CcchHH-HHh--------hhC-CcHHHHHHHhhc----------CCh
Q 038217 575 EAAGALALIV-------R---------------QPIGAA-AVG--------EEE-MAVTGLVGMMRC----------GTP 612 (715)
Q Consensus 575 ~al~~L~~La-------~---------------~~e~~~-~i~--------~~g-~~I~~Lv~lL~~----------~s~ 612 (715)
..-.+...|. + .|-.+. .+. +.+ ..+..|+++|.+ .++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 4332222221 1 122222 222 211 246788898874 245
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 613 RGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
.....|+.=+..++++-| ..+..+.+ .|+=..+++|+.+.++.++..|...++-
T Consensus 420 ~~laVAc~Digefvr~~P-~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLP-ESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHHCT-THHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCc-chhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 556666666888888874 34445544 8999999999999999999888765543
No 150
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.26 Score=46.60 Aligned_cols=209 Identities=13% Similarity=0.141 Sum_probs=141.0
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 511 (715)
.++..++.+|.++-..+|.||+..+.+++..-.. .. .-.+..|+.+++......+....+.++..++.. +..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e---l~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED---LY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG---GH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH---HH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHH
Confidence 4678899999988899999999999998864331 11 234556666766654777777777888877653 223
Q ss_pred HhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcc
Q 038217 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPI 588 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e 588 (715)
++ .+.+|.|..=..-|++..+.+...+|..+.. +++--. +++.-+..++.++ .-+-.|+..+..+ .+
T Consensus 104 ~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~al---Ge 173 (253)
T 2db0_A 104 LV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAM---GE 173 (253)
T ss_dssp HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTC---CT
T ss_pred HH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHH---hc
Confidence 32 2567777777777899999999999887765 333222 4455677788643 3333344444444 33
Q ss_pred hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
+.-.-+ ..- +|.|..+|..++.-+|..|+.+|.+++..+ +..+..+.. -++=+.+.++-++.+....|..
T Consensus 174 n~~~yv-~Pf-LprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~~-------kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 174 NSFKYV-NPF-LPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVIK-------RLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTHHHH-GGG-HHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHH-------HHHHCCCSCHHHHHHHHHHHHH
T ss_pred cCcccc-Ccc-hHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHHH-------HHHHhcCcHHHHHHHHHHHHHH
Confidence 333222 244 899999999999999999999999999987 344443333 4555666777777776654433
No 151
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.97 E-value=0.00063 Score=52.66 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=39.2
Q ss_pred CCCcCccCcccccCceeCCCcc-----HhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQ-----TYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cgh-----tfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
++-.|.||++-..+|.+.+|.+ .|-+.|+.+|+.. ++.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3558999998878887778653 6899999999985 6789999998764
No 152
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.77 E-value=0.00069 Score=57.03 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=39.1
Q ss_pred cCccCcccccCce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 293 CCPIMLDLMRDPV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 293 ~CpIc~~lm~dPv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.|++|.-.+..-. +++|+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888887776554 569999999999999999889999999988753
No 153
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.72 E-value=0.00076 Score=69.72 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=38.4
Q ss_pred CCcCccCcccccC----cee----CCCccHhhHHHHHHHHHhCC----------CCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRD----PVI----ISTGQTYDRRSIARWMEEGH----------RTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~d----Pv~----~~cghtfcr~cI~~w~~~~~----------~~CP~c~~~l~~ 338 (715)
.-.|+||+..+.+ |-. ..|||.|...|+.+||.... .+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4579999999887 432 26999999999999998621 479999998764
No 154
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.52 E-value=0.019 Score=60.97 Aligned_cols=267 Identities=12% Similarity=0.049 Sum_probs=143.5
Q ss_pred CCccHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCChhHHHhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 038217 341 LVPNRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKT 420 (715)
Q Consensus 341 l~pn~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~ 420 (715)
-.+|..+|.++--+....... + . + .-..+..|.+.+++.++-.+-.|++.|.++...
T Consensus 78 ~s~d~~lKrLvYLyl~~~~~~---~-~--------e-----------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~ 134 (355)
T 3tjz_B 78 QSNDPTLRRMCYLTIKEMSCI---A-E--------D-----------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS 134 (355)
T ss_dssp GCCCHHHHHHHHHHHHHHTTT---S-S--------C-----------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT
T ss_pred cCCCHHHHHHHHHHHHHhCCC---H-H--------H-----------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH
Confidence 457889999877666554311 1 0 0 114678899999999999999999999888743
Q ss_pred ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038217 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLF 500 (715)
Q Consensus 421 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 500 (715)
+.-. ...+.+-+.|.+.++-++..|+.+..+|..... + ++ .+.++.+-+++.+. ++-+..+|.++|.
T Consensus 135 --~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 135 --TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--D-VV--KRWVNEAQEAASSD-NIMVQYHALGLLY 201 (355)
T ss_dssp --TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--H-HH--HTTHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred --HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--H-HH--HHHHHHHHHHhcCC-CccHHHHHHHHHH
Confidence 2221 345567778889999999999999998875543 2 34 36889999999887 8888999999999
Q ss_pred HhccCchhHHHHhcccCcHHHHHHHhhcC---ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHH
Q 038217 501 SLSAVHEYKKKIADESGAVEALATLLRLG---TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEE 575 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~ 575 (715)
.+...+. .++..|+.-+..+ ++-+.-.-+.++..++..++. -.....++.+...|+ ++.+.-+
T Consensus 202 ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyE 269 (355)
T 3tjz_B 202 HVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYE 269 (355)
T ss_dssp HHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHH
T ss_pred HHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHH
Confidence 9987542 1344555555443 233333333333333332200 012345666667775 5688999
Q ss_pred HHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCC
Q 038217 576 AAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGT 655 (715)
Q Consensus 576 al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~ 655 (715)
|+.++..+...+. .+. ..+ +..|..++.+.++..|=.|+..|..+....+.. .... -.-+.+++.+++
T Consensus 270 a~k~I~~l~~~~~---~~~-~~a-~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~-v~~~------n~~ie~li~d~n 337 (355)
T 3tjz_B 270 AASAIVNLPGCSA---KEL-APA-VSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA-VTAC------NLDLENLVTDAN 337 (355)
T ss_dssp HHHHHTC---------------C-CCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHHhccCCCH---HHH-HHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH-HHHH------HHHHHHHccCCc
Confidence 9999988754222 122 233 577778888888999999999988888765432 2111 334677777776
Q ss_pred HHHHHHHH-HHHH
Q 038217 656 KRARRKAA-SLAR 667 (715)
Q Consensus 656 ~~~k~~A~-~lL~ 667 (715)
..+...|- .||+
T Consensus 338 ~sI~t~Aittllk 350 (355)
T 3tjz_B 338 RSIATLAITTLLK 350 (355)
T ss_dssp -------------
T ss_pred HhHHHHHHHHhhh
Confidence 66666554 3444
No 155
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.092 Score=53.50 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=119.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhH--HHHH-Hc-CChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-----h
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENR--AFIA-KA-GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-----N 465 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r--~~i~-~~-G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-----n 465 (715)
|-.+|.|.+|..|..|+.+|..+....+... .... .. ...+.+-+.+.+.+..++..++.+|..+...-. +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4488999999999999999999886543211 1111 12 345556678888999999999999988764321 1
Q ss_pred -hhhhhhhcCcHHHHHHH-HhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 466 -KSRIMDEEGCLGSIVKV-LRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 466 -k~~I~~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
..... ....++.|+.- |.++ ...++..|..++..+........ ..++.++..+.+.++..+..++..|..
T Consensus 94 ~~~~~~-~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 94 AHNITL-ISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHH-HHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred chhHHH-HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11122 35567777765 5555 77888888888877754322111 234566667778889999999998887
Q ss_pred hhcC--Cc--cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 544 LSTH--TD--NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 544 Ls~~--~~--n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
+... .. +....+ ..+++.+..+|. |+.++..|..++..+-.
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 7542 11 112222 235666777775 67999999999988754
No 156
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.02 E-value=1.2 Score=52.82 Aligned_cols=236 Identities=15% Similarity=0.026 Sum_probs=141.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh-ccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.++.|...|...+...+..|+..|..+.-.+ .|. .++..|+..+ ...+..++..++.+|..+...
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 3455555555444433334444444432211 111 1234555543 334566777777777665433
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~ 548 (715)
....++.+++.|....++-+|..++-++..-.....+ ..+|+.|+..+.+ .+..++..|+.+|..+....
T Consensus 539 --~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 --RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp --CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred --ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 3346677788887654666776665555422222112 3356667766654 45678888999988876544
Q ss_pred ccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
. ..++.++.+|. |+.++..+..+|..++...... .. +..|..+..+....++..|+.+|..+
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~a-id~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SA-IDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HH-HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HH-HHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3 24666777663 7789999999999886432221 22 66777788888999999999999988
Q ss_pred HhcCCHH---HHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHHH
Q 038217 626 CRSGGAS---ATERVLKAPALVGLLQALLFT--GTKRARRKAASLARVFQ 670 (715)
Q Consensus 626 ~~~~~~~---~~~~l~~~~g~i~~L~~Ll~s--~~~~~k~~A~~lL~~l~ 670 (715)
..+..+. ....+ ...|.....+ .++.++..|+-..-++.
T Consensus 675 g~gtnna~~~rva~~------l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 675 LIQQTEKLNPQVADI------NKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp STTCCTTTCTTHHHH------HHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred hcCCccccchHHHHH------HHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 8776433 12222 3336666654 46777877777666654
No 157
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.77 E-value=0.33 Score=48.27 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC-----HHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN-----PVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLGS 478 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~~ 478 (715)
-.+.|+.-++-+|. +++.|..+.+++..-.|-.+|...+ .-++-.+++++..|.+.++. -.-+. +.+.||.
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL-~tEiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLL-TTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHH-HTTHHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHH-hhhHHHH
Confidence 34788888888885 6899999999998888899997643 45788888888998876543 33334 7889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh--------hcCChhHHHHHHHHHHHhhcCCcc
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL--------RLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL--------~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.++.++.| +.-.+..|+-++..+-.++..-..+.....-+.++...| +..+++..|+.+.+-..|+.++..
T Consensus 150 CLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 150 CLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 99999999 999999999999999888887777766444444333333 346789999999999999998887
Q ss_pred HHHHHH
Q 038217 551 CVRMIE 556 (715)
Q Consensus 551 ~~~iv~ 556 (715)
+..+..
T Consensus 229 r~aL~~ 234 (268)
T 2fv2_A 229 REALRQ 234 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 158
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.33 E-value=0.94 Score=47.82 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=105.2
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 433 AIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
..+..++++.++|...+.-....+.+++...+ ..|+ ++..|.+=++++ ++-.|..|..+|.++...+- -
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~--e~iL----v~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m-~--- 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE--DVII----VTSSLTKDMTGK-EDSYRGPAVRALCQITDSTM-L--- 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS--CGGG----GHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTT-H---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH--HHHH----HHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHH-H---
Confidence 34567889999999999999999988887733 3344 577788888887 88999999999999966432 1
Q ss_pred hcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCc
Q 038217 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQP 587 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~ 587 (715)
....+.+.+.|.+.++-+++.|+.+..+|...... +++ +.+..+-.++. ++.++-+|+++|..+..++
T Consensus 138 ---~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 138 ---QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 13455667777788999999999999999764322 333 67888888886 5688899999999997643
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.63 E-value=1.2 Score=53.35 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
...++.|+..|.+ +.|..+..|+..|..++...+ ..+.. ...||.+....-+..+++...|..++..++..-.|
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 5578899998874 479999999999999997653 33332 35677777777778899999999999999876666
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc---Cchh-HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA---VHEY-KKKIADESGAVEALATLLRLGTPRGKKDAVTAL 541 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~---~~~~-~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL 541 (715)
+.. ...||.|++.+.++ + + .. .++..|+. ..+. ...+ +=.+|.|.+-|+..+...+..++..+
T Consensus 209 ~d~----~~~~~~~~~~~~~p-~-~-~~---~~~~~l~~~tfv~~v~~~~l---~~~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 209 KDI----ERFIPSLIQCIADP-T-E-VP---ETVHLLGATTFVAEVTPATL---SIMVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp TTT----GGGHHHHHHHHHCT-T-H-HH---HHHHHHTTCCCCSCCCHHHH---HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cch----hhhHHHHHHHhcCh-h-h-hH---HHHHHhhcCeeEeeecchhH---HHHHHHHHhhhccCcchhheeeEEEE
Confidence 653 35899999999886 2 2 33 34555543 2221 1111 12467777778777888899999999
Q ss_pred HHhhcCCccHHHHHHh--CChHHHHHhh---CChhHHHHHHHHHHHH
Q 038217 542 FNLSTHTDNCVRMIEA--GAVTALVGAL---GHEGVAEEAAGALALI 583 (715)
Q Consensus 542 ~nLs~~~~n~~~iv~a--G~v~~Lv~lL---~~~~~~~~al~~L~~L 583 (715)
-|||.--++...+... ..+|.|-+.. .++++++.|..++..|
T Consensus 276 ~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 9999866554443322 3344444333 2776666665555555
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.49 E-value=0.93 Score=45.09 Aligned_cols=201 Identities=10% Similarity=0.059 Sum_probs=136.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHh-------hccC-----CHHHHHHHHHHHh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNL-------LSTH-----NPVAQENSVTAML 457 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~l-------L~s~-----d~~~~~~A~~aL~ 457 (715)
.+..++..|.+. +.+..|+.+|..--..-++.-..+-.. |.+..|++= |+.+ ...-..+|+..|.
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 355666666644 457888887766444335555556555 777777542 2221 1234467777778
Q ss_pred hhhcCchhhhhhhhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCCh
Q 038217 458 NLSIYDKNKSRIMDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTP 531 (715)
Q Consensus 458 nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~ 531 (715)
-++.+++.|..+. .+...--|--+|.... -+-.|-.+++++..|...++ .-..+.+ .+.||..++.+..|++
T Consensus 82 cvAshpetr~~Fl-~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~Gse 159 (268)
T 2fv2_A 82 CVASHPETRSAFL-AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSE 159 (268)
T ss_dssp HHHHCTTTHHHHH-HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCH
T ss_pred HHHcCcchhhHHH-HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccH
Confidence 8899999999999 7776666666676531 13578899999999987554 3333445 7899999999999999
Q ss_pred hHHHHHHHHHHHhhcCCccHHHHHHh--------CChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhh
Q 038217 532 RGKKDAVTALFNLSTHTDNCVRMIEA--------GAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGE 595 (715)
Q Consensus 532 ~~~~~A~~aL~nLs~~~~n~~~iv~a--------G~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~ 595 (715)
-.|.-|.-.+..+-.++.+-..+... .++..++.-+. ++.+..+.+.+-..|+.++.++.++.+
T Consensus 160 lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 160 LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999988887766544333221 23333444442 457788888888888888888887764
No 161
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.33 E-value=0.013 Score=50.19 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCCcCccCcc-cccCcee--CCCccHhhHHHHHHHHH
Q 038217 290 KDFCCPIMLD-LMRDPVI--ISTGQTYDRRSIARWME 323 (715)
Q Consensus 290 ~~~~CpIc~~-lm~dPv~--~~cghtfcr~cI~~w~~ 323 (715)
+++.|+||.+ ++.+||. +.|+|+||+.|++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 4789998 79999999999998443
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.032 Score=58.62 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCcCccCcccccCceeC-CCccH--hhHHHHHHHHHh-CCCCCCCCccccccCCCCccHHHHHHHHH
Q 038217 291 DFCCPIMLDLMRDPVII-STGQT--YDRRSIARWMEE-GHRTCPKTGQMLVHDRLVPNRALRNLIVQ 353 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cght--fcr~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~i~~ 353 (715)
.+.||+++..|..|+-- .|.|. |+...+...... +...||.|++.+...+|..+..+..++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 68999999999999966 89997 887777666543 67899999999999999999988887654
No 163
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.20 E-value=0.41 Score=52.85 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=161.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhc--c-----CC---HHHHHHHHHHHhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLS--T-----HN---PVAQENSVTAMLN 458 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~--s-----~d---~~~~~~A~~aL~n 458 (715)
..+.|+..|-+..|+.|-.|+-.||.+.+............ ...-.|+.+|. . +| ..++|.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788899999999999999999999887653210000111 22223333332 1 12 4688888888888
Q ss_pred hhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHH
Q 038217 459 LSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAV 538 (715)
Q Consensus 459 Ls~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~ 538 (715)
+ .+-+.. ..++..++..+... ..++|..++-.|.++ .+. +..-.++++.++..|.+.+++++..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DL---L~~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEF---VEDKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGG---CCCHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHH---HHHHHHHHHHHHhhcCCcccHHHHHHH
Confidence 7 543322 23455555555665 899999999999999 221 111257788888889888899999999
Q ss_pred HHHHHhhcCCccHHHHHHhCChHHHHHhhC--Ch--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHH
Q 038217 539 TALFNLSTHTDNCVRMIEAGAVTALVGALG--HE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG 614 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ 614 (715)
.+|.-++ .++....+ +..+-..|. |+ ......+.+|+.|++.+.. .......||.|..++++.-..+
T Consensus 321 etLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 9998888 23222222 222333332 22 3344556677777765531 1112245899999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH----HHHHhhhhhhccCCC
Q 038217 615 KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR----VFQRCENAALHFGGL 682 (715)
Q Consensus 615 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~----~l~~~~~~~~~~~~~ 682 (715)
|..++.+|..+. . ..... -...+++-...+.+.+.+..+.+ ++..+-...|...|.
T Consensus 392 R~AVL~TL~tfL--~-~~~LR---------LIFQNILLE~neeIl~lS~~VWk~r~~Ll~~wi~L~MtPIGv 451 (800)
T 3oc3_A 392 RTSILNMVKNLS--E-ESIDF---------LVAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGG 451 (800)
T ss_dssp HHHHHHHTTTCC--C-HHHHH---------HHHHHHHHCSCHHHHHHHHHHHHTCSCCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH--h-hhHHH---------HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999987776 1 11111 12356777888888888877764 333333444455554
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.02 E-value=0.65 Score=47.97 Aligned_cols=187 Identities=10% Similarity=0.033 Sum_probs=114.2
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCc---HHHHHHHhhc-CChhHHHHHHHHHHHhhcCCcc
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGA---VEALATLLRL-GTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~---I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.+..+.+++ .|+.+.+--+..+++-+..++.....+....+. +..+...+.. +.+..+-.++++++||-.++..
T Consensus 104 ~l~~l~kil--~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI--NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH--TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH--cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 344455554 345555666666666666555544444432221 1122333322 3456688999999999998888
Q ss_pred HHHHHHh--CChHHHHHhhC--ChhHHHHHHHHHHHHhCCc---chHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHH
Q 038217 551 CVRMIEA--GAVTALVGALG--HEGVAEEAAGALALIVRQP---IGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAAL 622 (715)
Q Consensus 551 ~~~iv~a--G~v~~Lv~lL~--~~~~~~~al~~L~~La~~~---e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L 622 (715)
+..+... -+++.+...+. +..++..+..++.|++... ..... ...++..+..++.. .+.+..-.++.+|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~---~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG---KAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH---HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8877653 33444444443 5688889999999997521 11111 11124444455544 5778888899999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFT-GTKRARRKAASLARV 668 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~~~~~k~~A~~lL~~ 668 (715)
.+|...+ .++. .+.+..|+...+-.+... ..+++.+.|+.++.+
T Consensus 259 GtL~~~~-~~~~-~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 259 GTLISDD-SNAV-QLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTC-HHHH-HHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhCC-hhHH-HHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 9999874 3343 455547777777777765 478888998888765
No 165
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.97 E-value=1.3 Score=44.76 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=118.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCC-hHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGA-IPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIM 470 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~-i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~ 470 (715)
+.+...|-+.++..+.+|+..|......+++ ..+...+. ++.+.--+.+++..+...++.+|..+... .+.-..+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3556677778999999999999887755442 23332222 33333233467888988888888776321 11101111
Q ss_pred h--hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 471 D--EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 471 ~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
. ..-.+|.|+.-+... ...+|+.+-.+|..+.. +..-...++.+++-+++.+.+.+..++..|..+-...
T Consensus 127 ~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 0 134789998888666 77888888888877753 1221346777888888888999999998888875432
Q ss_pred ccHHHHHHhCCh---HHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 549 DNCVRMIEAGAV---TALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 549 ~n~~~iv~aG~v---~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
+.. ...++ +.+..+++ |..++..|+.++..+-
T Consensus 199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 221 24568 99999996 6689999998888653
No 166
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.48 E-value=0.053 Score=56.83 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCCcCccCcccccCceeC-CCccH--hhHHHHHHHHHh-CCCCCCCCccccccCCCCccHHHHHHHHH
Q 038217 290 KDFCCPIMLDLMRDPVII-STGQT--YDRRSIARWMEE-GHRTCPKTGQMLVHDRLVPNRALRNLIVQ 353 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~-~cght--fcr~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~i~~ 353 (715)
=.+.||++...|..|+-- .|.|. |+...+...... +...||.|++.+...+|..+..+..++..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 368999999999999975 89997 888777776654 57899999999999999999998887765
No 167
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.85 E-value=0.065 Score=53.46 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCCCccccccC
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPKTGQMLVHD 339 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~~ 339 (715)
-..|.||.++...-+.- .|++.|...|+.+|++. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999988855544 49999999999999986 357999999876543
No 168
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.49 E-value=3.2 Score=43.02 Aligned_cols=197 Identities=14% Similarity=0.066 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n 465 (715)
.+.+..|+..|..-+.+.+..+.....++.+.....+...++- .--..|..|+.. +++++--++-..|.-+..++.-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4577888888889999999999998888887765443332221 122222233322 4667777778888888888887
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIAD--ESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
...|. ..+.+..+.+.++.+ +-++-..|.+++..|-. +......... -...+...-+||.+++-=++..++..|.
T Consensus 157 a~~iL-~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 157 AKIIL-WSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHH-HSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 77777 777888999999888 99999999999987744 3322222221 1235667778899999999999999999
Q ss_pred HhhcCCccHHHHHHh----CChHHHHHhhCC--hhHHHHHHHHHHHHhCCc
Q 038217 543 NLSTHTDNCVRMIEA----GAVTALVGALGH--EGVAEEAAGALALIVRQP 587 (715)
Q Consensus 543 nLs~~~~n~~~iv~a----G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~ 587 (715)
.|-.+..|-.-|... .-+..++.+|+| ..++-+|..++...+.+|
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999988877654 457888888874 589999999999876554
No 169
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.39 E-value=2.4 Score=50.95 Aligned_cols=254 Identities=8% Similarity=0.053 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc------cCCHHHHHHHHHHHhhhhcCchhhhhhh----hhcC
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS------THNPVAQENSVTAMLNLSIYDKNKSRIM----DEEG 474 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~d~~~~~~A~~aL~nLs~~~~nk~~I~----~~~g 474 (715)
..+..|...|..++.... ..+.. -.++.+-..|. +.+...++.|+.++..++..-..+..-+ ....
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 346667777777775532 11111 12333334454 4677889999999999975421111000 0002
Q ss_pred cHHH----HHHHHhcC--CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 475 CLGS----IVKVLRFG--LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 475 ~i~~----Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
..+. ++..|... ..+-+|..|+++|..++..- ..... ...++.+++.|.+.+..++..|+.+|.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 2222 23334443 26788999999999997642 22222 457888888888777889999999999998742
Q ss_pred c---------cHHHHHH--hCChHHHHHhhCCh-----h--HHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhc
Q 038217 549 D---------NCVRMIE--AGAVTALVGALGHE-----G--VAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 549 ~---------n~~~iv~--aG~v~~Lv~lL~~~-----~--~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
+ .+..+.. ...++.|+.++... . ..+.++.+|..++.. .+.-..... . .++.|+..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~-l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-Q-LLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-H-HHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-H-HHHHHHHHHHH
Confidence 1 1222211 13344455555321 1 234555555554431 111111111 1 14444443332
Q ss_pred -----CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 610 -----GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 610 -----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.++..+..+..+|..++...+.+....+.. .+++.+..++.+........+-.++..+-
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 345667778888888887644444444433 46888888887765444444544444443
No 170
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.22 E-value=7.9 Score=36.63 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=144.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
++..+..++..|..+-|-+|.+|+..|..+++.-++...-+. ..|+-+|+ +.....-..-..++..++.. +
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i---~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKE---K 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHH---C
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHh---C
Confidence 456788899999999999999999999999988887766544 34555554 44544434455667766643 2
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..++ .+.+|.+..=..-| ++..+.+...+|..++.... ..+ .+.+..+..++.+.+..-+-.|+..+..|
T Consensus 102 Pe~v--~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltskd~~Dkl~aLnFi~al-- 171 (253)
T 2db0_A 102 PELV--KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSKNREDKLTALNFIEAM-- 171 (253)
T ss_dssp HHHH--HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCSSHHHHHHHHHHHHTC--
T ss_pred HHHH--HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHH--
Confidence 3344 45677777777778 99999999999999876432 223 34667788888876655555666665544
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCc-chHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQP-IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~-e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
.+|..+-+. -.+|.|..+|. |+-++..++.+|.++|... .-|.. |...++-+...|...+......|.
T Consensus 172 -Gen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki-------i~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 172 -GENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV-------VIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp -CTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH-------HHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred -hccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH-------HHHHHHHhcCcHHHHHHHHHHHHH
Confidence 445544332 36788888885 5678888999999998743 33333 233344456667777766666666
Q ss_pred HHHhc
Q 038217 624 ELCRS 628 (715)
Q Consensus 624 ~L~~~ 628 (715)
.+..-
T Consensus 243 rl~l~ 247 (253)
T 2db0_A 243 RLLLL 247 (253)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55543
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.06 E-value=2.9 Score=41.20 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=97.4
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHHhhChhh-HHHHHHcCChHHHHHhhcc----C-------CHHHHHHHHHHHhhhhc
Q 038217 395 LIQQLANGS-PRAKTVAAREIRLLAKTGKEN-RAFIAKAGAIPHLRNLLST----H-------NPVAQENSVTAMLNLSI 461 (715)
Q Consensus 395 Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s----~-------d~~~~~~A~~aL~nLs~ 461 (715)
.|+.|+++. .+...+.+..|+...+.++.. -..| ..||+..|+.+|.. + +...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 456665543 222334566666555554322 2233 46888888888753 1 45678889999999988
Q ss_pred CchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h-HHHHh---------cccCcHHHHHHHhhc-
Q 038217 462 YDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y-KKKIA---------DESGAVEALATLLRL- 528 (715)
Q Consensus 462 ~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~I~---------~~~g~I~~Lv~LL~~- 528 (715)
+..+...++...+++..|+..|.+. ...++..++.+|..++..++ . ...+. ....-+..+++.+++
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 8777777775788999999999877 88999999999888776543 2 22221 113456667777764
Q ss_pred CChhHHHHHHHHHHHhhcCCc
Q 038217 529 GTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~ 549 (715)
++.+.+..++..+-.|...++
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 334555555555555555443
No 172
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.77 E-value=4.5 Score=43.12 Aligned_cols=171 Identities=14% Similarity=0.149 Sum_probs=112.3
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHHhhChhh-HHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhh
Q 038217 394 LLIQQLANGS-PRAKTVAAREIRLLAKTGKEN-RAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 394 ~Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs 460 (715)
..|..|.++. .+...+.+..|+...+.++-. -..|. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4456666553 333345677777666555433 23344 6788999998852 24578888999999998
Q ss_pred cCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h-HHHH----------hcccCcHHHHHHHhh
Q 038217 461 IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y-KKKI----------ADESGAVEALATLLR 527 (715)
Q Consensus 461 ~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~I----------~~~~g~I~~Lv~LL~ 527 (715)
.+..+...++.....+..|+..|.+. ...++..|+.+|..++..++ + ...+ ++ ..-+..++..|.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTS
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHH
Confidence 88877777775788999999999887 88999999999988776543 2 2222 22 456778888887
Q ss_pred cC-ChhHHHHHHHHHHHhhcCCc-------cHHHHHHhCChHHHHHhhC
Q 038217 528 LG-TPRGKKDAVTALFNLSTHTD-------NCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 528 ~~-~~~~~~~A~~aL~nLs~~~~-------n~~~iv~aG~v~~Lv~lL~ 568 (715)
++ +.+.+..++..+-.+...++ -|..+...|..+.+- -|+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~-~lr 274 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELR 274 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH-HHT
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHH-HHh
Confidence 63 45666666666555655443 234445667555444 454
No 173
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.64 E-value=2.4 Score=42.78 Aligned_cols=188 Identities=12% Similarity=0.075 Sum_probs=116.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhcCch---hhhhhhhh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDK---NKSRIMDE-EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-- 507 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~---nk~~I~~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-- 507 (715)
+| |-.-|.+.+...+..|+..|..+..... ........ ....+.+-..+... +..+...++.+|..+...-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhh
Confidence 44 5567889999999999999988754321 11111101 23445556666655 88899999999988764211
Q ss_pred ---hHH-HHhcccCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHH
Q 038217 508 ---YKK-KIADESGAVEALATL-LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGAL 580 (715)
Q Consensus 508 ---~~~-~I~~~~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L 580 (715)
+.. .... ...++.|+.- +.+.....+..|..+|..++........+ +..++..++ ++.++..++..|
T Consensus 90 ~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHH
Confidence 111 1112 4577888754 66666788888888887776533322222 344555564 788999999988
Q ss_pred HHHhCC--cc--hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCH
Q 038217 581 ALIVRQ--PI--GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 581 ~~La~~--~e--~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
..+... .. .-...+. . +++.+..++.+.++.+|+.|..++..+...-|+
T Consensus 164 ~~~l~~fg~~~~~~k~~l~-~-i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLP-E-LLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHH-H-HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhCCCcCCchhHHH-H-HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 877532 11 1111111 1 245667788888999999999999998876553
No 174
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.57 E-value=2.4 Score=43.67 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=84.4
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 394 LLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 394 ~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+...+. ++.+..+.-+++.+.|+.. ++..|..+... ..++.+...+.+.+..++..+.+.++|++....+....-
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 3444444 3456678889999999885 57788877753 344555555566789999999999999987532211111
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL 526 (715)
....++..+..++....+.|+...++.+|.+|...+.....+....|.-..+-+..
T Consensus 230 ~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~ 285 (304)
T 3ebb_A 230 GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYS 285 (304)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGG
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHH
Confidence 01224555666676655889999999999999876554444444234333333333
No 175
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.81 E-value=2.8 Score=42.23 Aligned_cols=184 Identities=10% Similarity=0.009 Sum_probs=108.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHh----cCCCHHHHHHHHHHHHHhcc---Cchh
Q 038217 436 HLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLR----FGLTTEARENAAATLFSLSA---VHEY 508 (715)
Q Consensus 436 ~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~----~~~~~e~~~~Aa~~L~~Ls~---~~~~ 508 (715)
.+...|.+.|..-+..|+..|...... +...+. ..+..++..+. .. +..+...++.+|..+.. ..++
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445556666666666666554221 222222 13333444332 33 66666666666655521 1111
Q ss_pred HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
+..-.+..-.+|.|+.-+.+..+.++..+-.+|..|+. ++.. .+++.++.-++ +...++.++..+..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 11111112478999988876667777777766655543 1211 24555666664 67888999988888754
Q ss_pred CcchHHHHhhhCCcH---HHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038217 586 QPIGAAAVGEEEMAV---TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERV 637 (715)
Q Consensus 586 ~~e~~~~i~~~g~~I---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 637 (715)
. .|.. ...+ + +.+..++.+.+..+|+.|+.++..+....|+.+...+
T Consensus 197 ~-~G~~---~~~~-l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 197 N-AGIS---PLKS-LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp H-HCSG---GGGG-GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred h-cCCC---cccc-ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2 2222 2345 8 9999999999999999999999988877666655443
No 176
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=88.21 E-value=1.3 Score=48.91 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=106.9
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
..++..|+..+.....+++..++-.|..+ +..+..-.++++.++.-|+.. +.+++..||.+|.-++ ..+..
T Consensus 262 ~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA-~p~~l- 332 (800)
T 3oc3_A 262 NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-DEDIKLLSAELLCHFP-ITDSL- 332 (800)
T ss_dssp CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-SHHHHHHHHHHHTTSC-CSSTH-
T ss_pred HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-ccHHHHHHHHHhhhhc-chhhH-
Confidence 34555666666778899999999999999 122111256778888888877 8999999999999998 11111
Q ss_pred HHhcccCcHHHHHHHhhcCC--hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCC
Q 038217 511 KIADESGAVEALATLLRLGT--PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQ 586 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~ 586 (715)
...+..|.+.|.+.+ .......+.+|..|+..+.+. ......||.|..+|.. .+++..++.+|..+.
T Consensus 333 -----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-- 403 (800)
T 3oc3_A 333 -----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-- 403 (800)
T ss_dssp -----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--
T ss_pred -----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--
Confidence 223444455554422 345566677788887765320 0112678888888874 488888888887765
Q ss_pred cchHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHH
Q 038217 587 PIGAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAAL 622 (715)
Q Consensus 587 ~e~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L 622 (715)
.+.++..+-+ +|-...+++++.+..+.
T Consensus 404 ---------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 404 ---------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp ---------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 2222444444 55556777887776654
No 177
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.18 E-value=25 Score=41.94 Aligned_cols=216 Identities=9% Similarity=0.064 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-----CChHH----HHHhhccC---CHHHHHHHHHHHhhhhcCchhhhh
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKA-----GAIPH----LRNLLSTH---NPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-----G~i~~----Lv~lL~s~---d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.+|..+..|+..+..++......... ... ...+. ++..|.+. ++-++..|+++|..++..- .+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 567888888999999987432100000 000 12222 33345555 8899999999999987643 122
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch---------hHHHHhc-ccCcHHHHHHHhhcCC---hh--H
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE---------YKKKIAD-ESGAVEALATLLRLGT---PR--G 533 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~I~~-~~g~I~~Lv~LL~~~~---~~--~ 533 (715)
.. ..+++.++..|... +..++..|+.+|.++....+ .+..+.. -...++.|+.++.... +. .
T Consensus 493 ~l--~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 493 QL--IELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HH--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred HH--HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 22 45788888888876 78899999999999887422 2333322 1245666677776641 11 2
Q ss_pred HHHHHHHHHHhhc--CCccHHHHHHhCChHHHHHhh----C---ChhHHHHHHHHHHHHhCC--cchHHHHhhhCCcHHH
Q 038217 534 KKDAVTALFNLST--HTDNCVRMIEAGAVTALVGAL----G---HEGVAEEAAGALALIVRQ--PIGAAAVGEEEMAVTG 602 (715)
Q Consensus 534 ~~~A~~aL~nLs~--~~~n~~~iv~aG~v~~Lv~lL----~---~~~~~~~al~~L~~La~~--~e~~~~i~~~g~~I~~ 602 (715)
...++.+|..++. ..+.... +. ..++.|+..+ + +......++.+|..++.. ++....+ .... +|.
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~-~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~-~p~ 645 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPL-FP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSM-MPT 645 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGG-HH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhH-HH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHH-HHH
Confidence 3455556555432 1222211 11 1344444444 2 335555667777766553 2232222 3334 688
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHH
Q 038217 603 LVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 603 Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
+..++........+.+..++..+.
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHH
Confidence 888887765566666776665554
No 178
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.91 E-value=20 Score=42.70 Aligned_cols=175 Identities=11% Similarity=0.008 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh---h--cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHH
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL---R--LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTA 562 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~ 562 (715)
+...++.|+.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-........ .+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence 67789999999988876433211 23444455443 2 23678899999999988753221111111 24555
Q ss_pred HHHhhCChhHHHHHHHHHHHHhCCcchHHHHhh-hCCcHHHHHHHhhc--CChHHHHHHHHHHHHHHhcCC-HHHHHHHH
Q 038217 563 LVGALGHEGVAEEAAGALALIVRQPIGAAAVGE-EEMAVTGLVGMMRC--GTPRGKENAVAALLELCRSGG-ASATERVL 638 (715)
Q Consensus 563 Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~-~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~ 638 (715)
|+..| ++.++..|+.++.+++. +.+..+.. .+..+..|..++.. .+...++.+..++..+...-+ ++....+.
T Consensus 551 l~~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~ 627 (971)
T 2x1g_F 551 LVRGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD 627 (971)
T ss_dssp HHHHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55556 47889999999999984 33444432 12225556667776 357889999999988876532 22222221
Q ss_pred hc-CCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Q 038217 639 KA-PALVGLLQALLFTG--TKRARRKAASLARVFQR 671 (715)
Q Consensus 639 ~~-~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~ 671 (715)
.- ..++..+..++++. ++..+..+...+..|..
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 10 01233333444443 44455556666666654
No 179
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.93 E-value=12 Score=39.71 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=107.9
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHHHHhhChhh-HHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhh
Q 038217 394 LLIQQLANGSP-RAKTVAAREIRLLAKTGKEN-RAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 394 ~Lv~~L~s~~~-~~~~~A~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs 460 (715)
..|..|.++.. +...+.+..|+...+.++-. -..| ..||+..|+.+|.. .+...+..++.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 44566665432 22234566666655555322 2223 36788888888752 14577888999999998
Q ss_pred cCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h-HHHHh---------cccCcHHHHHHHhhc
Q 038217 461 IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y-KKKIA---------DESGAVEALATLLRL 528 (715)
Q Consensus 461 ~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~I~---------~~~g~I~~Lv~LL~~ 528 (715)
.+..+...+....+++..|+..|.+. ...++..++.+|..++..++ . ...+. ....-+..||+.+.+
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 88877777765788999999999876 88899899888887776543 2 22221 114466678888764
Q ss_pred C-ChhHHHHHHHHHHHhhcCCc-------cHHHHHHhCChHHHHHhhC
Q 038217 529 G-TPRGKKDAVTALFNLSTHTD-------NCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 529 ~-~~~~~~~A~~aL~nLs~~~~-------n~~~iv~aG~v~~Lv~lL~ 568 (715)
+ +.+.+..++..+-.|...++ -|..+..+|..+. +.-|+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i-l~~Lr 212 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR 212 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHT
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHh
Confidence 3 34556555555555555544 2445556665544 44443
No 180
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.62 E-value=32 Score=35.56 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=150.3
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 038217 428 IAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 428 i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
+...+.+..|+..|..=+.+.+..++.+..++.... +++...+. -..--+.|.-++..-.+.+.--.+-..|+....+
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence 455688999999999889999999999999986654 33322220 0112223333333322456667778888999998
Q ss_pred chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC---hHHHHHhhCCh--hHHHHHHHH
Q 038217 506 HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA---VTALVGALGHE--GVAEEAAGA 579 (715)
Q Consensus 506 ~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~---v~~Lv~lL~~~--~~~~~al~~ 579 (715)
+.....|.. .+.+..+.+.+..++=+...+|..++..|-. +......++..+. +...-.+|.++ -.+..++..
T Consensus 154 e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 888888877 7889999999988888889999999887765 4445555655543 55566677643 567889999
Q ss_pred HHHHhCCcchHHHHhh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHh
Q 038217 580 LALIVRQPIGAAAVGE---EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG--GASATERVLK 639 (715)
Q Consensus 580 L~~La~~~e~~~~i~~---~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~ 639 (715)
|..|-.+..+...+.+ .+.-+..++.+|++.+..+|-.|-.+..-+..+. ++.+...+..
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 297 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence 9998777777666533 3323788888999999999999999988777765 3456655555
No 181
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.57 E-value=0.68 Score=37.82 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.9
Q ss_pred CCcCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|.||++-.- +|.+. .|+...||.|++-=.+.|+..||.|+.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 458999998632 34444 6888889999998888999999999987753
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.30 E-value=5.2 Score=43.45 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=71.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHH
Q 038217 399 LANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGS 478 (715)
Q Consensus 399 L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~ 478 (715)
...|+..+++-|+.-|....+.-|+.... +|..++.|..+.|..++..|+..|-.+|.+ ++-. .+...
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~------kiaDv 104 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP------RVADI 104 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH------HHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh------hHHHH
Confidence 34678899999999999999988877544 577899999999999999999999999988 4422 45567
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
|+++|+.. +.......-.+|..|-.
T Consensus 105 L~QlLqtd-d~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 105 LTQLLQTD-DSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHh
Confidence 89999987 65555555555555433
No 183
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.38 E-value=16 Score=35.69 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=94.3
Q ss_pred cCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 473 EGCLGSIVKVLRF----G------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 473 ~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
.+|+..|+.+|.. + .+.+....+..+|..+..+......+...++++..|+..|...++.+++.++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4567777777643 1 12455678889999998888877777777899999999998888999999999999
Q ss_pred HhhcCCc--c-HHHHHHh----------CChHHHHHhhCC---hhHHHHHHHHHHHHhCCcc---hHHHHh---hhCCcH
Q 038217 543 NLSTHTD--N-CVRMIEA----------GAVTALVGALGH---EGVAEEAAGALALIVRQPI---GAAAVG---EEEMAV 600 (715)
Q Consensus 543 nLs~~~~--n-~~~iv~a----------G~v~~Lv~lL~~---~~~~~~al~~L~~La~~~e---~~~~i~---~~g~~I 600 (715)
.+|..++ + ...+.++ .-+..++..|.+ .+.+..++..+-.+...++ -|..+. ..-| +
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l 200 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-L 200 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-h
Confidence 9998664 5 6665554 245667777752 3555556666655555433 233332 2344 6
Q ss_pred HHHHHHhhc-CChHH
Q 038217 601 TGLVGMMRC-GTPRG 614 (715)
Q Consensus 601 ~~Lv~lL~~-~s~~~ 614 (715)
..+++-++. .++..
T Consensus 201 ~~il~~l~~~~~~~L 215 (233)
T 2f31_A 201 HQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhccCCHHH
Confidence 666665554 34443
No 184
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=85.33 E-value=6 Score=40.97 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=86.0
Q ss_pred HHhhhhcCchh-hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh-cCChh
Q 038217 455 AMLNLSIYDKN-KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR-LGTPR 532 (715)
Q Consensus 455 aL~nLs~~~~n-k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~-~~~~~ 532 (715)
-|+||..++.| -..++ ..+++..+..+++-. +.++.......|...|.....+..-. ...+|.++..+. .++++
T Consensus 265 DLL~LLmHdSnAIDGFV-k~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFV-RSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHCCSHHHHHHHH-HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhccccccccee-ecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcc
Confidence 35666666655 78888 999999999999888 88999999999998887665443322 367888888775 46678
Q ss_pred HHHHHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhh
Q 038217 533 GKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGAL 567 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL 567 (715)
+.-.....|.|...+.. .+...+..|+|+.|...+
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 88889999999998876 566677889999998876
No 185
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.23 E-value=9 Score=45.82 Aligned_cols=211 Identities=12% Similarity=0.065 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh---c--cCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCc
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL---S--THNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGC 475 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL---~--s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~ 475 (715)
.++..+..|+..+..++..-.... ...++.++.++ . ..++.++..++++|..++..- .+. ... ..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--~~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--PPA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--HHH
Confidence 577888889999988885432211 13444444433 2 247899999999999887532 222 222 356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcC--Ccc
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLG--TPRGKKDAVTALFNLSTH--TDN 550 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~--~~n 550 (715)
++.|+..|. ..++..|+.++.+|+. +.+..+.. -.+.+..|..++..+ +...+..+..++..++.. .+.
T Consensus 548 l~~l~~~l~----~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 548 INLLVRGLN----SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHhC----hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 777777773 3678999999999984 23333432 134566666777764 356777788888877653 233
Q ss_pred HHHHHHhCChHHHHHhh----C----ChhHHHHHHHHHHHHh---CC--c---chH------H--HHhhhCCcHHHHHHH
Q 038217 551 CVRMIEAGAVTALVGAL----G----HEGVAEEAAGALALIV---RQ--P---IGA------A--AVGEEEMAVTGLVGM 606 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL----~----~~~~~~~al~~L~~La---~~--~---e~~------~--~i~~~g~~I~~Lv~l 606 (715)
+...+. ..+++++..+ . +++........|..|+ .. + ++. . .-..... ++.+..+
T Consensus 622 ~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~~~ 699 (971)
T 2x1g_F 622 IPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT-MPIFKRI 699 (971)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT-HHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH-HHHHHHH
Confidence 333322 2344555443 2 2222233333333332 11 0 000 0 0111233 6666666
Q ss_pred hhc--CChHHHHHHHHHHHHHHhc
Q 038217 607 MRC--GTPRGKENAVAALLELCRS 628 (715)
Q Consensus 607 L~~--~s~~~ke~A~~~L~~L~~~ 628 (715)
+.. .++...+.++.++..++..
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHh
Confidence 654 3678899999988887653
No 186
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=81.34 E-value=2.2 Score=38.56 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-----C---CHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT-----G---TKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-----~---~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|...++..+-.|+.+|..||.++.+.++..+.+....|..|.++-.- | ...++.+|..|+.+|.+
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 456666666788999999999999999999888888888855555555554432 2 24678999999999987
Q ss_pred hhhh
Q 038217 672 CENA 675 (715)
Q Consensus 672 ~~~~ 675 (715)
....
T Consensus 131 ~~~~ 134 (140)
T 1vdy_A 131 EENG 134 (140)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 5444
No 187
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=80.70 E-value=30 Score=35.87 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCC
Q 038217 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL 487 (715)
Q Consensus 408 ~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~ 487 (715)
..+..-| ++.-++...-.-+++.+|+..+.......+.++...+...|+..|....-...- -...+|-++..+....
T Consensus 261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCC
Confidence 3444444 444466677888999999999999999999999999999988887554332222 2567888888886543
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
+.++.....+.|.+...+....+.+.-..|+|+.|-+.+..
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 88999999999999987776544444338999999988754
No 188
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=80.58 E-value=37 Score=40.26 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=95.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh---ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL---STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL---~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
.+.++..+..++..+..++..-... +...++.++..| ..+++.++..+++++..++..-....... ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHH
Confidence 5568888889999999988653221 123345555544 23578899999999998876422212334 5788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcCC--ccH
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHT--DNC 551 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~~--~n~ 551 (715)
+.|+..|.. ..++..|+.+|..++.. .+..+.. ....+..|..++..+ +...+..+..++..+.... +..
T Consensus 532 ~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 532 PLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 999988854 57899999999999842 2222321 023444555566543 3567778888888887543 233
Q ss_pred HHHHHhCChHHHHHhh
Q 038217 552 VRMIEAGAVTALVGAL 567 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL 567 (715)
...++ ..++++...+
T Consensus 607 ~~~~~-~l~~~l~~~l 621 (963)
T 2x19_B 607 LKNLH-SLISPYIQQL 621 (963)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 33222 2444444444
No 189
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=79.26 E-value=28 Score=41.28 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh---hcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHH
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL---RLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALV 564 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL---~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv 564 (715)
+...++.++.++..++..-.. .....++.++..+ .++++.++..++.+|..++..-........ .+++.++
T Consensus 462 ~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHH
Confidence 778899999999998864321 1123445555544 234677888899998888753221123332 5788888
Q ss_pred HhhCChhHHHHHHHHHHHHhCCcchHHHHhh-hCCcHHHHHHHhhc--CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038217 565 GALGHEGVAEEAAGALALIVRQPIGAAAVGE-EEMAVTGLVGMMRC--GTPRGKENAVAALLELCRSGGASATERVLKAP 641 (715)
Q Consensus 565 ~lL~~~~~~~~al~~L~~La~~~e~~~~i~~-~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~ 641 (715)
..|.++.++..|+.+|.+++. +.+..+.. .+..+..|..++.. -+...++.+..++..+....+.+.......
T Consensus 536 ~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-- 611 (963)
T 2x19_B 536 HALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-- 611 (963)
T ss_dssp HHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--
T ss_pred HHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--
Confidence 888888999999999999984 22222221 01113344445554 256889999999988886554222222222
Q ss_pred CcHHHHHHHh----hcC-CHHHHHHHHHHHHHHH
Q 038217 642 ALVGLLQALL----FTG-TKRARRKAASLARVFQ 670 (715)
Q Consensus 642 g~i~~L~~Ll----~s~-~~~~k~~A~~lL~~l~ 670 (715)
.+++++...+ .+. ++..+.....++..+.
T Consensus 612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 2354444433 233 6666665555555554
No 190
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=78.67 E-value=1.8 Score=43.11 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=26.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTA 455 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~a 455 (715)
|...+.+.++.++..++..+ ..+.|..++.+++..++..++..
T Consensus 79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHh
Confidence 33344556666666666431 12456777888888888877764
No 191
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=77.66 E-value=45 Score=35.27 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=97.2
Q ss_pred hhhhhhcCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRF----G------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD 536 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~ 536 (715)
..++ .+|+..|+.+|.. + .+......+..+|..+..+......+...+.+|..|+..|.+.++.+++.
T Consensus 104 ~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 4444 4678888888852 1 13466778889999998888877777777899999999998888999999
Q ss_pred HHHHHHHhhcCCc--c-HHHHHHh----------CChHHHHHhhCC---hhHHHHHHHHHHHHhCCcc---hHHHHh---
Q 038217 537 AVTALFNLSTHTD--N-CVRMIEA----------GAVTALVGALGH---EGVAEEAAGALALIVRQPI---GAAAVG--- 594 (715)
Q Consensus 537 A~~aL~nLs~~~~--n-~~~iv~a----------G~v~~Lv~lL~~---~~~~~~al~~L~~La~~~e---~~~~i~--- 594 (715)
|+.+|..+|..++ + ...+.++ .-+..++..|.+ .+....++..+-.+...++ -|..+.
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999998664 4 6665554 337778888863 3566666666655555432 333332
Q ss_pred hhCCcHHHHHHHhhc
Q 038217 595 EEEMAVTGLVGMMRC 609 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~ 609 (715)
..-| +..++.-++.
T Consensus 262 ~~~G-l~~il~~lr~ 275 (383)
T 3eg5_B 262 MRLG-LHQVLQELRE 275 (383)
T ss_dssp HHTT-HHHHHHHHTT
T ss_pred HHCC-hHHHHHHHhc
Confidence 2344 5666666665
No 192
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=76.34 E-value=47 Score=35.10 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=94.2
Q ss_pred cCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 473 EGCLGSIVKVLRF----G------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 473 ~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
.+|+..|+.+|.. + .+......+..+|..+..+......+...+++|..|+..|...++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3566677776642 1 13456778889999998888777777776899999999998888899999999999
Q ss_pred HhhcCCc--c-HHHHHHh----------CChHHHHHhhC---ChhHHHHHHHHHHHHhCCcc---hHHHHh---hhCCcH
Q 038217 543 NLSTHTD--N-CVRMIEA----------GAVTALVGALG---HEGVAEEAAGALALIVRQPI---GAAAVG---EEEMAV 600 (715)
Q Consensus 543 nLs~~~~--n-~~~iv~a----------G~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e---~~~~i~---~~g~~I 600 (715)
.+|..++ + ...+.++ .-+..++..+. +.+....++..+-.+...++ -|..+. ..-| +
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L 204 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-L 204 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-H
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-h
Confidence 9998664 4 5555444 24666888885 23566666666655655433 233331 2344 6
Q ss_pred HHHHHHhhc-CChHH
Q 038217 601 TGLVGMMRC-GTPRG 614 (715)
Q Consensus 601 ~~Lv~lL~~-~s~~~ 614 (715)
..+++-++. .++..
T Consensus 205 ~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 205 HQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHTTCCCHHH
T ss_pred HHHHHHHhccCChhH
Confidence 676676665 44443
No 193
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.87 E-value=7.6 Score=35.33 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLST------HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~d~~~~~~A~~aL~nLs~ 461 (715)
+.++..|..+|++.++.++..|+..|..+.+.. ...+..++...++..|+++++. .+..+++.++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999873 5566777778899999999864 478999999998887764
No 194
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=75.00 E-value=57 Score=39.28 Aligned_cols=215 Identities=12% Similarity=0.086 Sum_probs=129.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhc------Cc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSI------YD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~------~~ 463 (715)
.+..++..+-+++.+.|.+|-..|..+-+ ++ ++...+..+|. +.+..++..|+..|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 34455555556667777778777776643 33 45556666664 4688999999999988743 22
Q ss_pred hhhhhhhhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVT 539 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~ 539 (715)
+.|..|. ...+..+...-..+. +.-++...+.++..++..+-. ..+++.++.|+.++. .++.....++.
T Consensus 87 ~~~~~ir--~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 87 DHRIGIR--NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp HHHHHHH--HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHHHH
Confidence 3344444 334444443321110 245666677777777654221 245789999999986 45556777777
Q ss_pred HHHHhhcC-----Cc----cH-----HHHHHhCChHHHHHh----hC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCC
Q 038217 540 ALFNLSTH-----TD----NC-----VRMIEAGAVTALVGA----LG---HEGVAEEAAGALALIVRQPIGAAAVGEEEM 598 (715)
Q Consensus 540 aL~nLs~~-----~~----n~-----~~iv~aG~v~~Lv~l----L~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~ 598 (715)
+|..|+.. .+ .+ ..+.. .++.++.+ +. +..+...++.++......-. ...+.+..-
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~--~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~l 236 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSK--EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNI 236 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhH
Confidence 77777631 11 11 22222 13444333 32 45788888888887655322 222444343
Q ss_pred cHHHHHH-HhhcCChHHHHHHHHHHHHHHhc
Q 038217 599 AVTGLVG-MMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 599 ~I~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
++.+.+ ++ .++..+..|+.+|..+...
T Consensus 237 -l~~l~~~~l--~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 -LELLSTKFM--TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp -HHHHHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence 677664 44 3788899999999998876
No 195
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.99 E-value=7.2 Score=38.69 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred hChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 038217 420 TGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATL 499 (715)
Q Consensus 420 ~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 499 (715)
.++..|...+..=....|..++.++++.++..++..| . .+.|..+++.. +.++|..++..
T Consensus 62 ~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~-d~~VR~~aA~~- 121 (244)
T 1lrv_A 62 PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDE-DREVRITVADR- 121 (244)
T ss_dssp SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCS-CHHHHHHHHHH-
T ss_pred CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C---------------HHHHHHHHcCC-CHHHHHHHHHh-
Confidence 3456666666643345566777888899988887542 1 12344455565 77888777663
Q ss_pred HHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHH
Q 038217 500 FSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVT 539 (715)
Q Consensus 500 ~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~ 539 (715)
|. .+.|..++++.+..++..++.
T Consensus 122 --l~---------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 122 --LP---------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp --SC---------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred --CC---------------HHHHHHHHcCCCHHHHHHHHH
Confidence 21 113445556666667666665
No 196
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=73.97 E-value=8.1 Score=35.78 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~ 461 (715)
+.++..|..+|++.++.++..|+..|..+.+.. ...+..|+...++..|+++++. .++.+++.++..+...+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999874 5556677777888889998876 678999999998877754
No 197
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=71.54 E-value=31 Score=37.42 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=76.1
Q ss_pred hcCCCHHHHHHHHHHHHHhc-cCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHH
Q 038217 484 RFGLTTEARENAAATLFSLS-AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTA 562 (715)
Q Consensus 484 ~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~ 562 (715)
.+| +...+..|+..|-... ..++... .+|..+++|+.+++..+++.|+..|..+|.+ ++..++ +..
T Consensus 38 ~kg-~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDv 104 (507)
T 3u0r_A 38 VKG-GTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADI 104 (507)
T ss_dssp GGS-CHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHH
T ss_pred cCC-CHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHH
Confidence 355 7899999999987654 4444433 4677999999999999999999999999988 776654 567
Q ss_pred HHHhhC--Ch---hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 563 LVGALG--HE---GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 563 Lv~lL~--~~---~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
|+++|. ++ .++.+++.-|..+ ++ .+. +..|..-+..+.+..|+.++.-|
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~--Dp--------k~t-l~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKM--DA--------KGT-LGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHH--CH--------HHH-HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhc--Ch--------HHH-HHHHHHHHcccchHHHHHHHHHH
Confidence 899996 32 3333333333222 11 122 44444444446677777776665
No 198
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.60 E-value=8.7 Score=35.85 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLST------HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~d~~~~~~A~~aL~nLs~ 461 (715)
+..+..|..+|+++++.++..|+..|..+.+.. ...+..|+...++..|+++++. .+..+++.++..+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999874 4556677778899999999863 468999999999987764
No 199
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.60 E-value=10 Score=34.10 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~ 461 (715)
+..+..|..+|.++++.++..|+..|..+.+.. ......++...++..|+++++..++.++...+..+...+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 447788999999999999999999998888764 3344456666788888898887889999999999987764
No 200
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=68.04 E-value=1.2e+02 Score=36.79 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=134.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhc------Cc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSI------YD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~------~~ 463 (715)
.+..++..+-+++.+.+.+|-..|..+- .+++. ...+..+|. +.++.++.-|+.+|.+... .+
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 5667777777778887777777775544 34433 344444554 3588999999999988743 22
Q ss_pred hhhhhhhhhcCcHHHHHHHHhcC----CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRFG----LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVT 539 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~ 539 (715)
+.+..|. ...+..+...-.++ .+...+...+.++..++..+-. ..+++.++.|+.++.. ++......+.
T Consensus 99 e~~~~LR--~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P----~~Wp~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 99 NQCEGIK--KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP----KHWPTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp HHHHHHH--HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh----hhccHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3344444 45556555543321 1345556666666666543210 1357888899988864 4566677888
Q ss_pred HHHHhhcC--C-------cc-----HHHHHHhCChHHHHHhhC-------ChhHHHHHHHHHHHHhCCcchHHHHhhhCC
Q 038217 540 ALFNLSTH--T-------DN-----CVRMIEAGAVTALVGALG-------HEGVAEEAAGALALIVRQPIGAAAVGEEEM 598 (715)
Q Consensus 540 aL~nLs~~--~-------~n-----~~~iv~aG~v~~Lv~lL~-------~~~~~~~al~~L~~La~~~e~~~~i~~~g~ 598 (715)
+|..|+.. . .. +..+.+ .++.++.++. ++.+...++.+|..+.+.-. -..+++.+-
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~l 248 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchH
Confidence 88887643 1 01 112222 2555555542 56788888999998877532 235666555
Q ss_pred cHHHHH-HHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 599 AVTGLV-GMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 599 ~I~~Lv-~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
++.|+ .++ +++..+..|+.+|..+....
T Consensus 249 -l~~L~~~~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 249 -ISTLIYKFL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp -HHHHHHHTS--SSHHHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHhc--CChHHHHHHHHHHHHHHhcc
Confidence 78774 555 57899999999999998754
No 201
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=67.75 E-value=95 Score=38.07 Aligned_cols=217 Identities=10% Similarity=0.011 Sum_probs=121.8
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh--ccCCHHHHHHHHHHHhhhhc------
Q 038217 392 AELLIQQLANG--SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL--STHNPVAQENSVTAMLNLSI------ 461 (715)
Q Consensus 392 i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~~~~A~~aL~nLs~------ 461 (715)
+..++..+-++ +.+.+.+|-..|..+-+. + .+...+...| .+.+..++..|+..|.|...
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44444444333 667788888888776543 2 2334444333 34678899999999988642
Q ss_pred CchhhhhhhhhcCcHHHHHHHHhcC--CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHH
Q 038217 462 YDKNKSRIMDEEGCLGSIVKVLRFG--LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVT 539 (715)
Q Consensus 462 ~~~nk~~I~~~~g~i~~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~ 539 (715)
.++.|..|. ...+..+...-... .+.-++...+.++..++..+-. ..+++.++.|+.++.. ++.....++.
T Consensus 83 ~~e~k~~Ir--~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 83 SRLEKVYLK--NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMF 155 (1204)
T ss_dssp CHHHHHHHH--HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred CHHHHHHHH--HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHH
Confidence 223344444 33444433321110 2566777778888877664321 3467899999999875 4556777888
Q ss_pred HHHHhhcC---Cc----cHHH----HHHhCChHHHHHh----hCC---------------------hhHHHHHHHHHHHH
Q 038217 540 ALFNLSTH---TD----NCVR----MIEAGAVTALVGA----LGH---------------------EGVAEEAAGALALI 583 (715)
Q Consensus 540 aL~nLs~~---~~----n~~~----iv~aG~v~~Lv~l----L~~---------------------~~~~~~al~~L~~L 583 (715)
+|..|+.. .+ .+.. .+... ++.++.+ +.+ ..+...++.++.+.
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 88888642 11 1211 11111 3333333 321 12344455555443
Q ss_pred hCCcchHHHHhhhC-CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 584 VRQPIGAAAVGEEE-MAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 584 a~~~e~~~~i~~~g-~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
... -.-..+.+.. ..++.+..++. ++..+..|+.+|..++...
T Consensus 235 l~W-i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 235 IDW-VSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTT-SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred Hhc-cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 332 1223333432 23666666554 6788999999999999865
No 202
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=67.37 E-value=44 Score=40.29 Aligned_cols=140 Identities=12% Similarity=0.012 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHhccCchhH-HHHhcccCcHHHHHHHhhcCC-----hhHHHHHHHHHHHhhcCCccHHHHHHhCCh
Q 038217 487 LTTEARENAAATLFSLSAVHEYK-KKIADESGAVEALATLLRLGT-----PRGKKDAVTALFNLSTHTDNCVRMIEAGAV 560 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~Ls~~~~~~-~~I~~~~g~I~~Lv~LL~~~~-----~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v 560 (715)
.+...++.++.++..++...... ..-.- ..+++.|+.++.... ...+..++++|...+..-.....+.. .++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence 47999999999999998754321 21111 468889999886421 12223344555444332222222221 245
Q ss_pred HHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhh--h---CCcHHHHHH----HhhcCChHHHHHHHHHHHHHHhcC
Q 038217 561 TALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGE--E---EMAVTGLVG----MMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 561 ~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~--~---g~~I~~Lv~----lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
..|+..|. ++++++.|+.++.+||. +++..+.. . ...++.++. ....-++.....+..++..+....
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 55566664 46899999999999984 45555532 1 112454444 333356777778888888877765
Q ss_pred C
Q 038217 630 G 630 (715)
Q Consensus 630 ~ 630 (715)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 4
No 203
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.87 E-value=15 Score=33.01 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|.++++..+-.|+.+|-.+..++|......+.. ..++..|+.++....+.++++...++.....
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 5677777788899999999999988888888777766665 5688888888877788999997777665443
No 204
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.47 E-value=5.1 Score=31.93 Aligned_cols=45 Identities=16% Similarity=0.400 Sum_probs=34.7
Q ss_pred CCCCCCcCccCcccccCceeCCC----ccHhhHHHHHHHHHh----CCCCCCC
Q 038217 287 SIPKDFCCPIMLDLMRDPVIIST----GQTYDRRSIARWMEE----GHRTCPK 331 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~c----ghtfcr~cI~~w~~~----~~~~CP~ 331 (715)
.....+.|.+|.+-+.|.-.+.| +|.||-.|-...++. +.-.||.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 34567899999999999877644 699999999998875 2335655
No 205
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=63.19 E-value=4.7 Score=33.67 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=42.5
Q ss_pred CCCCCCCcCccCcccccCceeC-CCcc-----HhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQ-----TYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cgh-----tfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
.=+++.++|||+++....-|.+ ..+. -|+...+.+.... +..-|.+|.+++...+
T Consensus 22 ~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~-~~~HPLSREpit~sMI 82 (102)
T 2kkx_A 22 QCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE-GLPHPLTREPITASII 82 (102)
T ss_dssp TCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH-TCCCTTTCCCCCTTTE
T ss_pred cCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc-CCCCCCccCCCCHhhE
Confidence 3467789999999999999977 3322 3899999998887 4557899988876543
No 206
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.47 E-value=22 Score=32.29 Aligned_cols=73 Identities=10% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLST------HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s------~d~~~~~~A~~aL~nLs~ 461 (715)
+..+..|..+|.+.++.++..|+..|..+.+..- .....|+...++..|+++++. .+..++...+..+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4477899999999999999999999999987653 345566677889999999863 578999999999988764
No 207
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=61.96 E-value=38 Score=40.84 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc---CCH--HHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST---HNP--VAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s---~d~--~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
.+|..+..++.+++.++..-......-.-..+++.|+.++.. .|+ .++..++++|...+.--....... ..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 579999999999999885432221211112467778887753 123 344456677776654222212222 3455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-----ccCcHHHHHHHhh----cCChhHHHHHHHHHHHhhcC
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-----ESGAVEALATLLR----LGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-----~~g~I~~Lv~LL~----~~~~~~~~~A~~aL~nLs~~ 547 (715)
..|+..+... .+.++..|+.++.+|+.. .+..+.. ....++.++..+. .-+......+..++..+...
T Consensus 543 ~~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5566666554 678999999999999863 3333321 0124555544332 23455666777777777664
Q ss_pred Cc
Q 038217 548 TD 549 (715)
Q Consensus 548 ~~ 549 (715)
..
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 208
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=61.91 E-value=23 Score=32.61 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT-GTKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|.++++..+-.|+.+|-.+..++|......+.. ..++..|+.++.. ..+.+++++..+++.-..
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 5667777788899999999999999888888877767765 6688888888875 467889987776655443
No 209
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.54 E-value=17 Score=33.03 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT------GTKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s------~~~~~k~~A~~lL~~l~ 670 (715)
+..|..-|.++++..+-.|+.+|-.+..++|......+.. ..++..|+.++.. ..+.+++++..+++.-.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 5677777788999999999999999999988888777776 6789999988864 26788888666555543
No 210
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.86 E-value=19 Score=33.56 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT------GTKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s------~~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|.++++..+-.|+.+|-.+..++|......+.. ..++..|+.++.. ....+++++..+++.-..
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677777888999999999999999888887777777766 6788999998863 257889987666665443
No 211
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=57.25 E-value=3.1e+02 Score=32.68 Aligned_cols=208 Identities=10% Similarity=0.019 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC---CHHHHHHHHHHHhhhhc--Cch----hhhhhhhh
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH---NPVAQENSVTAMLNLSI--YDK----NKSRIMDE 472 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~---d~~~~~~A~~aL~nLs~--~~~----nk~~I~~~ 472 (715)
.+.+.|.+|-..|..+-+ +++ +......+|..+ +..++.-|+.+|.+.-. .++ .+..|.
T Consensus 20 sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-- 87 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-- 87 (980)
T ss_dssp SCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH--
Confidence 378888888888877654 343 344555666553 68899999988876543 333 344443
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHHHHHHhhcC---C
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDAVTALFNLSTH---T 548 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nLs~~---~ 548 (715)
...+..+...-..+...-++...+.+|..+....- ...+++.++.|+.++..++. ......+++|..++.. .
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~----p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY----PSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT----TTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC----cccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhc
Confidence 33344443310001245677777777777765321 12457888999999876554 3445556666644321 0
Q ss_pred c--------c-----HHHHHHhCC----hHHHHHhh------CChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHH
Q 038217 549 D--------N-----CVRMIEAGA----VTALVGAL------GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 549 ~--------n-----~~~iv~aG~----v~~Lv~lL------~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~ 605 (715)
. . +..|.+ .. ++....+| .++.++..++.+|......- .-..+...+- ++.+..
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~-~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~l-l~~l~~ 240 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRA-NDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPC-MNLLYS 240 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHH-HHHHHH
T ss_pred ccccCHHHHhhhHHHHHHHHh-ccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchH-HHHHHH
Confidence 0 1 222222 21 33333444 25677888888888776632 2344555444 888888
Q ss_pred HhhcCChHHHHHHHHHHHHHHhcCC
Q 038217 606 MMRCGTPRGKENAVAALLELCRSGG 630 (715)
Q Consensus 606 lL~~~s~~~ke~A~~~L~~L~~~~~ 630 (715)
++. ++..++.|+.+|..+...+.
T Consensus 241 ~L~--~~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 241 FLQ--IEELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HTT--SHHHHHHHHHHHHHHHHSCC
T ss_pred HcC--ChHHHHHHHHHHHHHHHcCC
Confidence 886 58999999999999988763
No 212
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.48 E-value=34 Score=30.96 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT------GTKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s------~~~~~k~~A~~lL~~l~ 670 (715)
+..|..-+.++++..+-.|+.+|-.+..+.|......+.. ..++..|+.++.. ..+.++.+...+++.-.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 6677777778999999999999999999998877777766 6688889988863 46788888655555543
No 213
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.91 E-value=2.8 Score=27.97 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=12.5
Q ss_pred CCcCccCcccccCce
Q 038217 291 DFCCPIMLDLMRDPV 305 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv 305 (715)
-|.||+|+..+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 589999998888764
No 214
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.72 E-value=20 Score=35.01 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~ 461 (715)
+.++..|..+|.+.++.++..|+..|..+.++.- .....|+...++..|+++++. .+..+++.++..+...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999887643 345566677788888888865 578899999999988764
No 215
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=52.22 E-value=1.4e+02 Score=27.38 Aligned_cols=74 Identities=8% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhh--hHHHHHHHHHHHHHHHH
Q 038217 60 RSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQN--HSISGHFHDLNQEISTL 137 (715)
Q Consensus 60 ~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~--~~i~~~f~~~~~~l~~~ 137 (715)
++..+++.+|..-++||...++. |.-...|..-+..|..+..+.+.+... |-++.+ ..+...+..+.+.|...
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~l~--~gE~eeLe~e~~rL~nae~l~~~~~~a---~~~L~~~e~~~~~~L~~a~~~L~~l 82 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVSPD--PGEEEGLNTELSRLSNLHTIAQAAAGG---VELLSDGDLNAAGLIGEAVRALNAG 82 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--TTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHHCHHHHHHHHHHH---HHHHhCCcchHHHHHHHHHHHHHHH
Confidence 46678899999999999988863 344566778888888888888887655 233333 26777777777777764
Q ss_pred h
Q 038217 138 L 138 (715)
Q Consensus 138 L 138 (715)
-
T Consensus 83 ~ 83 (175)
T 4abx_A 83 A 83 (175)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=51.58 E-value=77 Score=38.12 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
.+|..+..++..+..++..-......-.-...++.|+.+... +.+.++..+++++...+..-....... ..++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence 578888999999998875322211100011233344443321 223444457777777664322222333 3578
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
+.++..|... +..++..|+.++.+++..
T Consensus 543 ~~ll~~l~~~-~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 543 LKLFEFMHET-HEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 8888888776 889999999999999873
No 217
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=50.20 E-value=6.1 Score=32.67 Aligned_cols=49 Identities=8% Similarity=0.029 Sum_probs=35.5
Q ss_pred CCCCCcCccCcccccCceeCCC-ccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~c-ghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
.-.-+.|..|-.-.+ -.+.| .|-.|+.|+...+.. ...||.|+.+|..+
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 334567887754443 45545 577799999987766 77899999999764
No 218
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.02 E-value=31 Score=33.32 Aligned_cols=72 Identities=4% Similarity=0.066 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhc
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~ 461 (715)
.++..|..+|.+.++.++..|+..|..+.+.. ...+..|+...++..|+.+++. .+..+++.++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999875 3455667777788888888864 568899988888877653
No 219
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.72 E-value=6.5 Score=32.74 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHh
Q 038217 312 TYDRRSIARWMEE 324 (715)
Q Consensus 312 tfcr~cI~~w~~~ 324 (715)
.|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 220
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.57 E-value=32 Score=33.45 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|.++++..+-.|+.+|-.+..+.|......+.. ..++..|..++... .+.+++++..+++....
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5667777788999999999999999988888777777766 66788888888654 67889997777766554
No 221
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.01 E-value=6.7 Score=32.57 Aligned_cols=13 Identities=31% Similarity=0.859 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHh
Q 038217 312 TYDRRSIARWMEE 324 (715)
Q Consensus 312 tfcr~cI~~w~~~ 324 (715)
.|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 222
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=47.38 E-value=47 Score=30.29 Aligned_cols=73 Identities=7% Similarity=0.095 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHH-HHHhhcc---CCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPH-LRNLLST---HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~-Lv~lL~s---~d~~~~~~A~~aL~nLs~ 461 (715)
+.++..|..+|+ +.++.++..|+..|..+.+.. +..+..++...++.. |++++.. .+..+++.++..+...+.
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 447788999998 589999999999999999875 556666777788887 8888853 346889998888877754
No 223
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=47.05 E-value=2.3e+02 Score=28.84 Aligned_cols=133 Identities=13% Similarity=0.080 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhc-ccCcHHH
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIAD-ESGAVEA 521 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~-~~g~I~~ 521 (715)
|.+..+.|+-.|.-+|.+-..-..|+. +-..+..|+ +... .+...++.|+++|...-.+.. ....|.. .+..+..
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 455667788888888888777666762 333333333 2233 367789999999986655443 3333332 3466666
Q ss_pred HHHHhhc-------CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhh--C--ChhHHHHHHHHHHHH
Q 038217 522 LATLLRL-------GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL--G--HEGVAEEAAGALALI 583 (715)
Q Consensus 522 Lv~LL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL--~--~~~~~~~al~~L~~L 583 (715)
+..-|.. ...-..|.-+.+|-.|..++. .+ ...++..|..++ . ++.++.+++.++..+
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 6544432 223567777888888887752 12 133566777776 3 678888888888765
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.65 E-value=31 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|.++++..+..|+.+|-.+..+.|......+.. ..++..|+.++.+. ...++.++..+++.-..
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5566667778999999999999999999887777766666 56888888888765 57888887766665543
No 225
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.63 E-value=66 Score=29.92 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHhhhhhccCCCCChHHHHHHhhh
Q 038217 146 IELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVE 205 (715)
Q Consensus 146 l~~s~ev~e~v~~~~~q~~~~~~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~~l~~~~~~ 205 (715)
+++++|=+++++.++++++.....+-.+-.....++..++. ..+||.+.++.++..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~----a~~~DeakI~aL~~E 121 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT----ASSPDTAKINAVAKE 121 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHH
Confidence 67899999999999888875443321111223334444443 456888888777655
No 226
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.05 E-value=9 Score=33.39 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=38.8
Q ss_pred CCCcCccCcccccC---ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 290 KDFCCPIMLDLMRD---PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 290 ~~~~CpIc~~lm~d---Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
+-|.|..|...+.+ .....-|..||..|..+.|.. ...|..|++++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 45999999999974 344567889999999887643 2379999998876544
No 227
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=42.39 E-value=1.6e+02 Score=30.03 Aligned_cols=147 Identities=8% Similarity=0.003 Sum_probs=94.3
Q ss_pred cHHHHHHHHhcC--C---CHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC-
Q 038217 475 CLGSIVKVLRFG--L---TTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLSTH- 547 (715)
Q Consensus 475 ~i~~Lv~lL~~~--~---~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~- 547 (715)
.+..+..++++| . +.+..+.|+..|..+|.+-.+-.+|.. ....+..|+ +.....+..++.|+.+|..--.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 455566677775 2 234678899999999998888888876 334444444 22223456788888887765554
Q ss_pred CccHHHHHHh--CChHHHHHhhC---------ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC--ChHH
Q 038217 548 TDNCVRMIEA--GAVTALVGALG---------HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG--TPRG 614 (715)
Q Consensus 548 ~~n~~~iv~a--G~v~~Lv~lL~---------~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~ 614 (715)
+.....+... ..|..+..-|. ...++..-+++|..|..++.. + ...+ +..|.+++..+ .+..
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~-m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYS-TVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CC-HHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhcc-HHHHHHHHccCCCCHHH
Confidence 4444444433 33444433332 226778889999999877621 1 1345 78888888777 8899
Q ss_pred HHHHHHHHHHHHh
Q 038217 615 KENAVAALLELCR 627 (715)
Q Consensus 615 ke~A~~~L~~L~~ 627 (715)
|..++.++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999888876653
No 228
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=40.63 E-value=1.8e+02 Score=28.37 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=86.1
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhc-Cchhhhh
Q 038217 392 AELLIQQL-ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSI-YDKNKSR 468 (715)
Q Consensus 392 i~~Lv~~L-~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~-~~~nk~~ 468 (715)
+..+...| ++...++|..|+..|..+ .. ....++.+.. +-...+-.+++.+..++..++. ...
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 34445555 456677888888866555 21 1224555555 4445778999999999988874 211
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC-cHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG-AVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g-~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
...++.+...++++ +..+|..|...+.--+..... ..+ .. +++.|-.+..+.+.-+++.....|..++..
T Consensus 138 ----e~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~---k~d-p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 ----KKALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYF---KEN-PNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp ----TTTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTT---TTC-HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchh---hcC-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 12566777788887 999999888776542221111 111 22 344444444445567888889999999974
Q ss_pred -CccHHHHHH
Q 038217 548 -TDNCVRMIE 556 (715)
Q Consensus 548 -~~n~~~iv~ 556 (715)
++-...+++
T Consensus 209 ~Pd~V~~~~~ 218 (240)
T 3l9t_A 209 FPDLVKIELK 218 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 444444444
No 229
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=40.59 E-value=7.4 Score=24.70 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=12.3
Q ss_pred CCCcCccCcccccCce
Q 038217 290 KDFCCPIMLDLMRDPV 305 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv 305 (715)
..|.||+|..-|-|+-
T Consensus 2 ~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCEECTTSSCEESSHH
T ss_pred CcccCccccccCcChH
Confidence 4678999988887763
No 230
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.34 E-value=5.9 Score=32.92 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+..||.|...|.. .-|+.+|..|=..+ .. ...||.|+++|..
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f-~~-~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFI-EM-KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEE-EE-EEECTTTCSBCEE
T ss_pred cccCccCCCccee----cCCEEECccccchh-hc-cccCcchhhHHHH
Confidence 3799999988753 12333365554432 22 4689999998853
No 231
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=39.10 E-value=5.6e+02 Score=30.40 Aligned_cols=195 Identities=11% Similarity=0.062 Sum_probs=109.7
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHhhC-hh----hHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCch
Q 038217 394 LLIQQLANG---SPRAKTVAAREIRLLAKTG-KE----NRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 394 ~Lv~~L~s~---~~~~~~~A~~~L~~La~~~-~~----~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
.....|... +.++|.-|+..|++..+.- ++ .+..+. ...+..+...-. ....-++.+...+|..+....-
T Consensus 44 ~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~ 122 (980)
T 3ibv_A 44 ICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY 122 (980)
T ss_dssp HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 344555432 6888888888888776521 22 333222 223333333100 1345677777777777765431
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCH-HHHHHHHHHHHHhccC----c------------hhHHHHhcc--cCcHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTT-EARENAAATLFSLSAV----H------------EYKKKIADE--SGAVEALATL 525 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~-e~~~~Aa~~L~~Ls~~----~------------~~~~~I~~~--~g~I~~Lv~L 525 (715)
.. . =.+.++.++..+.++ +. ......+.+|..++.. . +.+..+.+. ...++....+
T Consensus 123 p~---~-Wp~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~i 197 (980)
T 3ibv_A 123 PS---N-WNDFFASLQGVIAAS-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEM 197 (980)
T ss_dssp TT---T-CTTHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cc---c-CchHHHHHHHHhcCC-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHH
Confidence 00 1 245777788887764 32 3344445555533221 0 013333321 1123344444
Q ss_pred hhc----CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCC---cchHHHHhh
Q 038217 526 LRL----GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQ---PIGAAAVGE 595 (715)
Q Consensus 526 L~~----~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~---~e~~~~i~~ 595 (715)
|.. .++.....++.+|......-. ...++..+.++.+..+|.++.+.+.|+.+|..+... ++.+..+++
T Consensus 198 L~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 198 MLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 432 567777888888877766433 345566788999999999999999999999988653 344444443
No 232
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.83 E-value=65 Score=27.89 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhccCccccccchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhcc
Q 038217 30 VALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCG 109 (715)
Q Consensus 30 ~~l~~~l~~~~~~i~~~~~~~~~~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~ 109 (715)
.+++..+.....++... ... +..|+-+.+.-+|+. .||+-++... +++.++..|-.|-.+|+. .++.
T Consensus 12 ~~~i~~l~~~l~~~l~~-~~~--~~~k~~~~D~~KRL~---~LfdkLn~~~--Ls~~v~~~L~~l~~al~~-----~dy~ 78 (118)
T 2yru_A 12 ETLIEDVLRPLEQALED-CHG--HTKKQVCDDISRRLA---LLREQWAGGK--LSIPVKKRMALLVQELLH-----HQWD 78 (118)
T ss_dssp CCCHHHHHHHHHHHHHH-HHT--TSCHHHHHHHHHHHH---HHHHHHHHTC--SCHHHHHHHHHHHHHHHH-----TCHH
T ss_pred HHHHHHHHHHHHHHHHH-hhh--HHHHHHHHHHHHHHH---HHHHHHhcCC--CCHHHHHHHHHHHHHHHc-----CCHH
Confidence 34555555555554331 111 234666899999999 7788888655 588888889999888875 3455
Q ss_pred ccchhHHHHhh
Q 038217 110 QSSKLWLLLQN 120 (715)
Q Consensus 110 ~~Sklyll~~~ 120 (715)
.+.+++..+..
T Consensus 79 ~A~~ih~~l~t 89 (118)
T 2yru_A 79 AADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56555544443
No 233
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.29 E-value=10 Score=27.16 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=12.2
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|+.
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 47899999999985
No 234
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=36.18 E-value=16 Score=31.79 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=37.3
Q ss_pred CCCCcCccCcccccC-ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRD-PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d-Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
++-|.|..|...+.+ +....-|..||..|..+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 357999999998876 4455778899999987654 5689999998874
No 235
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=35.43 E-value=6.2e+02 Score=30.28 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-----C--ChhHHHHHHHHHHHhh
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-----G--TPRGKKDAVTALFNLS 545 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-----~--~~~~~~~A~~aL~nLs 545 (715)
+.+.+..++.+|.|+-. ...++.|..++.. . ..+.+..|+.+|.++.
T Consensus 453 ~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~ 506 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA 506 (1056)
T ss_dssp CHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG
T ss_pred ChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh
Confidence 44555555555555533 2345555555531 1 1345566666666665
No 236
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.02 E-value=78 Score=28.75 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=51.6
Q ss_pred HHHHHHHhh-cCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHH-HHHHhhc-C--CHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMR-CGTPRGKENAVAALLELCRSGGASATERVLKAPALVGL-LQALLFT-G--TKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~-L~~Ll~s-~--~~~~k~~A~~lL~~l~ 670 (715)
+..|.+-|. .+++..+-.|+.+|-.+..++|......+.. ..++.. |+.++.. . ...+++++..+++.-.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 566777676 4789999999999999999988877777766 667887 7787742 2 3578888665555543
No 237
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=34.95 E-value=5e+02 Score=31.09 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-------CCHHHHHHHHHHHhhhhcCc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-------HNPVAQENSVTAMLNLSIYD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-------~d~~~~~~A~~aL~nLs~~~ 463 (715)
....|.+.+.+++.+.+.-++..|.|+.. + +.++.|.+++.. ....++..|+.+|.+++...
T Consensus 441 i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 441 LHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 44556667777888888888998888773 2 357777777742 24578899999999998543
Q ss_pred hhhhhhhhhcCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLR-FGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTPRGKKDAVTAL 541 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL 541 (715)
.. -+-+.+..+.. ...+.|+|..|..+|+.-... ...+..+...+.. .+.++.......|
T Consensus 510 p~--------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~----------~~~l~~ia~~l~~E~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 510 PR--------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS----------VALVSMVAVRLRREPNLQVASFVYSQM 571 (1056)
T ss_dssp HH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----------HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hH--------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC----------HHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 21 12233455553 344889999888888765433 2234455555554 4567778888888
Q ss_pred HHhhcCCc
Q 038217 542 FNLSTHTD 549 (715)
Q Consensus 542 ~nLs~~~~ 549 (715)
.+|+....
T Consensus 572 ~sla~s~~ 579 (1056)
T 1lsh_A 572 RSLSRSSN 579 (1056)
T ss_dssp HHHTTCCS
T ss_pred HHHHhcCC
Confidence 88887554
No 238
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=34.35 E-value=5.6e+02 Score=30.76 Aligned_cols=175 Identities=13% Similarity=0.047 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhC-----hhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 401 NGSPRAKTVAAREIRLLAKTG-----KENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~-----~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
+.++++|.-|+..|++..+.+ ++.|..+. ...+..+...-.+ .++.++.+.+.++..++..+-.. .
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR-~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~ 147 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK-KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---H 147 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH-HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---T
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH-HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---h
Confidence 457888888999888877642 34444333 2334444443222 24556666666776666432100 0
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--c------------hhHHHHhcccCcHHHHHHH----hhc-CCh
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV--H------------EYKKKIADESGAVEALATL----LRL-GTP 531 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~------------~~~~~I~~~~g~I~~Lv~L----L~~-~~~ 531 (715)
=.+.++-++..++. +....+..+.+|..|+.. + ..+..+.. .++.++.+ |.. +++
T Consensus 148 -Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~---~~~~Il~ll~~iL~~~~~~ 221 (1073)
T 3gjx_A 148 -WPTFISDIVGASRT--SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN---EFSQIFQLCQFVMENSQNA 221 (1073)
T ss_dssp -CTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH---TCHHHHHHHHHHHHHCCCH
T ss_pred -ccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH---HHHHHHHHHHHHhcccCCH
Confidence 24677778887765 445677788888877643 1 11223333 24444444 433 457
Q ss_pred hHHHHHHHHHHHhhcCCccHHHHHHhCChHHH-HHhhCChhHHHHHHHHHHHHhCC
Q 038217 532 RGKKDAVTALFNLSTHTDNCVRMIEAGAVTAL-VGALGHEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 532 ~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~L-v~lL~~~~~~~~al~~L~~La~~ 586 (715)
.....++.+|......-+ ...+++.+.++.| ..+|.++.+...|+.+|..+.+.
T Consensus 222 ~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 222 PLVHATLETLLRFLNWIP-LGYIFETKLISTLIYKFLNVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcCChHHHHHHHHHHHHHHhc
Confidence 778888999998887654 3467788888888 58888899999999999998653
No 239
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=34.13 E-value=15 Score=26.92 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=12.4
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 57899999999985
No 240
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=32.37 E-value=14 Score=27.37 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.7
Q ss_pred CCCCCCCcCccCccc
Q 038217 286 LSIPKDFCCPIMLDL 300 (715)
Q Consensus 286 ~~~~~~~~CpIc~~l 300 (715)
.++|+++.||+|+.-
T Consensus 31 e~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 31 KDIPDDWVCPLCGVG 45 (54)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hHCCCCCcCcCCCCc
Confidence 479999999999853
No 241
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=31.84 E-value=3.7e+02 Score=32.75 Aligned_cols=179 Identities=9% Similarity=0.062 Sum_probs=103.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhh-----ChhhHHHHHHcCChHHHHHhhcc---CCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 400 ANGSPRAKTVAAREIRLLAKT-----GKENRAFIAKAGAIPHLRNLLST---HNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~-----~~~~r~~i~~~G~i~~Lv~lL~s---~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
.+.+..+|.-|+..|++..+. +++.|..|.+ ..+..+...-.. ....++.....++..++..+-. ..
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~--- 131 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH--- 131 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT---
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc---
Confidence 355788899999999987754 3444544442 233333322111 3567788888888887755311 11
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-------chh-----HHHHhcc-cCcHHHHHHHhhc----------
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-------HEY-----KKKIADE-SGAVEALATLLRL---------- 528 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-------~~~-----~~~I~~~-~g~I~~Lv~LL~~---------- 528 (715)
=.+.++.|+..+++ +...++.+..+|..|+.. ... +..+... ...++.+..++..
T Consensus 132 Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp CTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 25678888888876 456678888888888642 011 1112210 1233334444432
Q ss_pred ---------CChhHHHHHHHHHHHhhcCCccHHHHHHhC--ChHHHHHhhCChhHHHHHHHHHHHHhCC
Q 038217 529 ---------GTPRGKKDAVTALFNLSTHTDNCVRMIEAG--AVTALVGALGHEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 529 ---------~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG--~v~~Lv~lL~~~~~~~~al~~L~~La~~ 586 (715)
++......++.++.+....-. ...+++.. .++.+..++.++.++..|+.+|..++..
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTC
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 112345566666655444322 12233332 6777777777888999999999998763
No 242
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=29.87 E-value=5e+02 Score=27.14 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKT-GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.+-.|+...+..+.+++...+..++.+..+ ++. .-.++++.++.|-...+.+++.-.+..|...+.. +..+
T Consensus 26 ~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~el 97 (386)
T 3o2t_A 26 RVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DIEL 97 (386)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGG
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HHHH
Confidence 344444444422235788999999997653 342 2257899999998888999999999888777642 2222
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc--------cCch-------hHHHHhcccCcHHHHHHHhhcCChhHH
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS--------AVHE-------YKKKIADESGAVEALATLLRLGTPRGK 534 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls--------~~~~-------~~~~I~~~~g~I~~Lv~LL~~~~~~~~ 534 (715)
. .-+++.|..+|... +..+...+..+..++- .++. ....+ ...-..++.++.+++..++
T Consensus 98 ~--~~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m---~~lK~~Il~~~ds~n~GVr 171 (386)
T 3o2t_A 98 L--LKLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV---SAMAGDIILLLDSDNDGIR 171 (386)
T ss_dssp H--HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH---HHHHHHHHHGGGCSSHHHH
T ss_pred H--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH---HHHHHHHHHHhccCCcchH
Confidence 2 35677888888765 7776665554433331 1111 11112 1234455666777788888
Q ss_pred HHHHHHHHHhhc--CC---c-----------------------cHHHHHH--hCChHHHHHhhCC----hhHHHHHHHHH
Q 038217 535 KDAVTALFNLST--HT---D-----------------------NCVRMIE--AGAVTALVGALGH----EGVAEEAAGAL 580 (715)
Q Consensus 535 ~~A~~aL~nLs~--~~---~-----------------------n~~~iv~--aG~v~~Lv~lL~~----~~~~~~al~~L 580 (715)
-.|++.+..+.. .+ + +...+-+ .|.+..|+..+.+ ......++..|
T Consensus 172 l~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsL 251 (386)
T 3o2t_A 172 THAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSL 251 (386)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHH
Confidence 888888776531 10 0 1223221 2667777777752 33455567777
Q ss_pred HHHhC
Q 038217 581 ALIVR 585 (715)
Q Consensus 581 ~~La~ 585 (715)
..|+.
T Consensus 252 a~Iak 256 (386)
T 3o2t_A 252 ANIAR 256 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 243
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=29.67 E-value=1.3e+02 Score=29.68 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCch-hhhhhhhhcCcHHHHHHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYDK-NKSRIMDEEGCLGSIVKVL 483 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g~i~~Lv~lL 483 (715)
.+.-++.-+|.++.+.+.+ +.+..++. .+.+.++..+.-++.++.|+-.+.. ++..+. .......++..+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~-~~~~~~~i~~~i 141 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLE-SNQVYKSIFETI 141 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHT-SHHHHTTHHHHS
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHh-cchhHHHHHHHH
Confidence 3566777777777554321 33333332 3335567889999999999998888 677776 444455555554
Q ss_pred hcC-------CCHHHHHHHHHHHHHhccCchh-HHHHhcccCcHHHHHHHhhc---------CChhHHHHHHHHHHHhhc
Q 038217 484 RFG-------LTTEARENAAATLFSLSAVHEY-KKKIADESGAVEALATLLRL---------GTPRGKKDAVTALFNLST 546 (715)
Q Consensus 484 ~~~-------~~~e~~~~Aa~~L~~Ls~~~~~-~~~I~~~~g~I~~Lv~LL~~---------~~~~~~~~A~~aL~nLs~ 546 (715)
.+. .+..++..++.+++|+|..-.. +. . ......+++.+.. .+++..--++.+|.+|..
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~-~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C-TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h-HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 221 1446778888888999873221 10 1 2233445554432 244566666667777664
No 244
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=29.46 E-value=4.1e+02 Score=26.03 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
+..+-.|+..-+..+.+.+...+..++.++.++ +.. + ..+++.++.+-.+.+.+++.-.+..|...+. .+.
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~l---l--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~---~k~ 85 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAEL---A--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCK---VKV 85 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGG---H--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH---HCG
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhH---H--HHHHHHHHHhccCChHHHHHHHHHHHHHHHH---HHH
Confidence 345556666666544478999999999987654 221 1 3467778887777889999998888877762 233
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh--------ccCch-------hHHHHhcccCcHHHHHHHhhcCChh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL--------SAVHE-------YKKKIADESGAVEALATLLRLGTPR 532 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L--------s~~~~-------~~~~I~~~~g~I~~Lv~LL~~~~~~ 532 (715)
.+. ..+++.|..+|+.. +..+...+..+..++ +.++. ....+ ...-..++.++.+++..
T Consensus 86 ~l~--~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m---~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 86 ELL--PHVINVVSMLLRDN-SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL---SLIKAQILDMIDNENDG 159 (257)
T ss_dssp GGH--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH---HHHHHHHHHGGGSSCHH
T ss_pred HHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HHHHHHHHHHHccCCcc
Confidence 343 56788888888865 777766655443333 22221 11111 12334555566667777
Q ss_pred HHHHHHHHHHHhh
Q 038217 533 GKKDAVTALFNLS 545 (715)
Q Consensus 533 ~~~~A~~aL~nLs 545 (715)
++-.|++.+..+.
T Consensus 160 vkl~~iKF~e~vI 172 (257)
T 3gs3_A 160 IRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7777777766653
No 245
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.25 E-value=20 Score=28.98 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=12.5
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47999999999986
No 246
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.83 E-value=11 Score=30.11 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=37.6
Q ss_pred CcCccCcccccCcee----CC--Cc-cH-hhHHHHHHHHHhCCCCCCCCccccccCCCCccHH--HHHHHHHH
Q 038217 292 FCCPIMLDLMRDPVI----IS--TG-QT-YDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRA--LRNLIVQW 354 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~----~~--cg-ht-fcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~--l~~~i~~~ 354 (715)
-.||||+..+...-. +. -. -. -+|.-...-+..-.+.||.|+..+.-+.+-.+.+ +-.++.+|
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~EaeKVFELLNdF 81 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRREAEKVFELLNDF 81 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTTHHHHHHHHHSC
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHHHHHHHHHHHHc
Confidence 379999988764321 11 11 11 2455555555555678999999988777755543 33444443
No 247
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=28.81 E-value=32 Score=24.35 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.|.|++|...+.....+ ..-+...-......||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhCC
Confidence 57899999888764211 111222222235689999876643
No 248
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=28.75 E-value=28 Score=30.32 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=37.9
Q ss_pred CCCCcCccCcccccC---ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRD---PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d---Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
++-|.|..|...+.+ +....-|..||..|..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 457999999998853 556678889999999886632 2289999988764
No 249
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.14 E-value=18 Score=26.50 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=12.3
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|..
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47899999999985
No 250
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=28.05 E-value=20 Score=27.28 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=28.9
Q ss_pred HhHHhHHHHH-hcCCCCChhHHHhHHHHHHHHHHHHHHHHhcc
Q 038217 68 AFLVLLEYLR-DSGTCIESTAVLCFKELYLLLYRCKILLDYCG 109 (715)
Q Consensus 68 ll~~lleel~-~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~ 109 (715)
-|+.++||+. |-++ -..-...+.+.|..-+..|+.|+..|.
T Consensus 15 ~LL~VIeEmgkdIrp-TYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKEIRP-TYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTTHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccch-hhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4567788885 2221 111235578899999999999999996
No 251
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.99 E-value=18 Score=26.84 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=12.3
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 31 EDIPADWVCPDCGV 44 (55)
T ss_dssp GGSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999985
No 252
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.40 E-value=56 Score=29.88 Aligned_cols=47 Identities=9% Similarity=0.095 Sum_probs=35.8
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
++-|.|..|...+.+-....-|..||..|..+-+ ...|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH---SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc---cccccccccccCC
Confidence 4579999999888765444668889999998766 3578888877654
No 253
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.95 E-value=39 Score=31.45 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=35.1
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
++-|.|..|...+.+.....-|..||..|..+-| ...|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 4568999998887654334567889999887644 45899998877654
No 254
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.82 E-value=22 Score=33.07 Aligned_cols=28 Identities=32% Similarity=0.473 Sum_probs=18.7
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
+..+.|++|+.+... .-+..||.|+.+-
T Consensus 136 ~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 136 KKVYICPICGYTAVD--------------------EAPEYCPVCGAPK 163 (170)
T ss_dssp SCEEECTTTCCEEES--------------------CCCSBCTTTCCBG
T ss_pred CCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCH
Confidence 346788888876652 1245899998754
No 255
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=25.75 E-value=4.7e+02 Score=25.43 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=69.6
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHh-hChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 391 TAELLIQQLA-NGSPRAKTVAAREIRLLAK-TGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 391 ~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.++.+...+. ..++.++..++..++.++. .+++ ..++.+...+.+++..++.-|...+.--+.... .
T Consensus 104 ~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~ 172 (240)
T 3l9t_A 104 ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---F 172 (240)
T ss_dssp HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---T
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---h
Confidence 3444444243 5678888888888888775 4443 267788889999999999999888765333211 1
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE 507 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 507 (715)
.. ....+-+++.-|....+.-+|...+..|..+|..+.
T Consensus 173 k~-dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 173 KE-NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp TT-CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred hc-CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 11 223344445545554477889999999999998665
No 256
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.69 E-value=2.7 Score=34.00 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=23.2
Q ss_pred CcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..||.|...|..- -++.+|..|=..+ .. ...||.|++++..
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~-~~-~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDF-SL-QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEE-EE-EEECSSSCSCCCE
T ss_pred CCCCCCCCccccC----CCceECccccccC-CC-cccCcchhhHHHH
Confidence 5799998777531 1222344443321 22 3379999988754
No 257
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=25.53 E-value=21 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=12.8
Q ss_pred CCCCCCCcCccCccc
Q 038217 286 LSIPKDFCCPIMLDL 300 (715)
Q Consensus 286 ~~~~~~~~CpIc~~l 300 (715)
.++|+++.||+|..-
T Consensus 35 ~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 35 VDLSDSFMCPACRSP 49 (70)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hhCCCCCcCCCCCCC
Confidence 468999999999863
No 258
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.01 E-value=15 Score=34.62 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=37.3
Q ss_pred CCCCcCccCcccccC---ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRD---PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d---Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
++-|.|..|...+.+ +....-|..||..|..+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 357999999998875 666677899999999876532 1269999887754
No 259
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=23.18 E-value=67 Score=28.65 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=53.2
Q ss_pred ccchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHH
Q 038217 53 FFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQ 132 (715)
Q Consensus 53 ~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~ 132 (715)
.+.+++=..||++++-+-.+|+.|.+.+. ++..-..-.....-.-+|++.||..+..+ |+.....|..+..
T Consensus 27 ~~Lk~hRe~LV~rl~~v~~LLD~LL~~gv-Ls~EE~EiV~~~~T~~dKaRrLLDlV~sK--------Ge~a~e~Ll~~Lq 97 (144)
T 4e9m_A 27 QLLKSNRELLVTHIRNTQCLVDNLLKNDY-FSAEDAEIVCACPTQPDKVRKILDLVQSK--------GEEVSEFFLYLLQ 97 (144)
T ss_dssp HHHHHTHHHHHHHCCCCHHHHHHHHHTTS-SCHHHHHHHHTSSSHHHHHHHHHHHHHHH--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHhccCChHHHHHHHHHHHHHh--------hHHHHHHHHHHHH
Confidence 45566777899999999999999998776 55554466666777889999999987732 3444444444444
Q ss_pred HHHHH
Q 038217 133 EISTL 137 (715)
Q Consensus 133 ~l~~~ 137 (715)
++..+
T Consensus 98 ql~da 102 (144)
T 4e9m_A 98 QLADA 102 (144)
T ss_dssp HHHHH
T ss_pred Hcccc
Confidence 44443
No 260
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.68 E-value=27 Score=28.58 Aligned_cols=14 Identities=43% Similarity=0.935 Sum_probs=12.4
Q ss_pred CCCCCCCcCccCcc
Q 038217 286 LSIPKDFCCPIMLD 299 (715)
Q Consensus 286 ~~~~~~~~CpIc~~ 299 (715)
.++|+++.||+|+.
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47999999999985
No 261
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=22.22 E-value=44 Score=24.85 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHH----hCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWME----EGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~----~~~~~CP~c~~~l~~ 338 (715)
.|.|++|+..|.... .+..+.. .....|+.|++.+..
T Consensus 4 py~C~~C~k~F~~~~-----------~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDAS-----------GLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHH-----------HHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHH-----------HHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 588999998887642 2223322 235689999987754
No 262
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=21.43 E-value=3.8e+02 Score=28.45 Aligned_cols=130 Identities=17% Similarity=0.092 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCchh-hhhhhhhcCcHHHHHHHHh
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYDKN-KSRIMDEEGCLGSIVKVLR 484 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~~n-k~~I~~~~g~i~~Lv~lL~ 484 (715)
+.-++.-+|.+..+.+.+ +.+..++. .+.+..+..+.-++.+|+||-.+... +..+. .......+++.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~-~~~~~~~i~~~i~ 314 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLE-SNQVYKSIFETID 314 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHT-SHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhh-CchhHHHHHHHHH
Confidence 556777777776554321 22333332 33345678899999999999888874 44444 4334566666553
Q ss_pred cC-------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh---------cCChhHHHHHHHHHHHhhcC
Q 038217 485 FG-------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR---------LGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 485 ~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~---------~~~~~~~~~A~~aL~nLs~~ 547 (715)
.. .+..++..++.+++|+|....... .. ......++..+. ..+.+..--++.||.+|...
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--~~-~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--SC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhccc--ch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 21 134678888888899987432100 01 234445555554 23567777788888888753
No 263
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.20 E-value=76 Score=25.64 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCCCCCCcCccCcccccCceeC---CCccHhhHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII---STGQTYDRRSIARW 321 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w 321 (715)
..++.+-.|+||...=.+ ..+ .|+..|-..|+++-
T Consensus 10 e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 567788999999855443 333 57888999999885
No 264
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=21.02 E-value=82 Score=26.25 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=56.0
Q ss_pred cchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHH-HHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHH
Q 038217 54 FQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKE-LYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQ 132 (715)
Q Consensus 54 ~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~-L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~ 132 (715)
..+++=..+++++.-+.++|+.|.+.+. +...- ..... -...-++|+.|+.... ..|+.....|.....
T Consensus 14 ~L~~~R~~LV~~l~~V~~lLD~LL~~~V-L~~ee-~~I~~~~~T~~~kaR~Lld~v~--------~KG~~A~~~F~~~L~ 83 (98)
T 2nz7_A 14 LLKSNRELLVTHIRNTQCLVDNLLKNDY-FSAED-AEIVCACPTQPDKVRKILDLVQ--------SKGEEVSEFFLYLLQ 83 (98)
T ss_dssp HHHHTHHHHHHHCCCCHHHHHHHHHTTS-SCHHH-HHHHHTCCSHHHHHHHHHHHHH--------HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHcCC-CCHHH-HHHHccCCCcHHHHHHHHHHHH--------HHhHHHHHHHHHHHH
Confidence 3455666789999889999999997765 55544 33332 3455789999997654 346777888889999
Q ss_pred HHHHHhccC
Q 038217 133 EISTLLDVF 141 (715)
Q Consensus 133 ~l~~~L~~l 141 (715)
+..++|-.+
T Consensus 84 e~~~~~~~~ 92 (98)
T 2nz7_A 84 QLADAYVDL 92 (98)
T ss_dssp HHHHSSGGG
T ss_pred HhCccchhh
Confidence 988887655
No 265
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.68 E-value=2e+02 Score=24.31 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccCccccccchhhHHHHHHHHHHhHHhHHHHHhcC-CCCChhHHHhHHHHHHHHHHHHHHHHhcc
Q 038217 31 ALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSG-TCIESTAVLCFKELYLLLYRCKILLDYCG 109 (715)
Q Consensus 31 ~l~~~l~~~~~~i~~~~~~~~~~~~kk~~~~l~r~i~ll~~lleel~~~~-~~~~~~~~~~l~~L~~al~~ak~Ll~~C~ 109 (715)
.++..|.++..+=....... +++...|-+.+..+..+|+...+.. ....+....|+.++..+-..+...+++|.
T Consensus 5 ~ll~KL~~ll~~E~~l~~gv-----~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 5 NLIPKLGELLTEEFKLHKGV-----KKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544322222333 7788888888888889988876542 12467789999999999999999998864
No 266
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.35 E-value=89 Score=23.67 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=27.7
Q ss_pred CCCCcCccCcccccCc-eeCCCccHhhHHHHHHHHHh
Q 038217 289 PKDFCCPIMLDLMRDP-VIISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dP-v~~~cghtfcr~cI~~w~~~ 324 (715)
++=|.|..|...+.+. ....-|..||+.|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 3469999999888653 44567888999999988864
Done!