BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038218
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 174/267 (65%), Gaps = 5/267 (1%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R ++ AL+TVIDDIYD+YGTL+EL+ FT + RWDIN +I QLPDYM++CF AL N
Sbjct: 281 ARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDIN-SIDQLPDYMQLCFLALNN 339
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
FV + + ++K++ + + ++ SW+ L ++VEA+W++ + P+LEEYL+N+ SISG
Sbjct: 340 FVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISG 399
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
P + + T+ ++ ++ L DL++WSS +LRL +DLGTS +E+ RGDV KS+Q
Sbjct: 400 PCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQ 459
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
CYM + ASE AR+H+K LI ++WKK M+ R S KD P + ++ R+A
Sbjct: 460 CYMSDYNASEAEARKHVKWLIAEVWKK--MNAERVS--KDSPFGKDFIGCAVDLGRMAQL 515
Query: 241 IYLHGDGHGAQKQETMDEVFALLFQPI 267
+Y +GDGHG Q ++ LF+P
Sbjct: 516 MYHNGDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 167/251 (66%), Gaps = 8/251 (3%)
Query: 2 RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNF 61
R +LT ALVT IDD++DIYGTL+EL LFT A++RWDI ++KQLP YM+IC+ AL+NF
Sbjct: 309 RIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE-SMKQLPPYMQICYLALFNF 367
Query: 62 VSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGP 121
V+E+A L+ + D ++ W+GL++++L+EAKWY+ + P+LEEY+KN+ +SI G
Sbjct: 368 VNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGI 427
Query: 122 LITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQC 181
I + T+ I E+ E + D+++ S ILRL +D+GTS DE++RGDV KS+QC
Sbjct: 428 PILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQC 487
Query: 182 YMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFI 241
YM+E ASEE AREH++ LI Q WK + ++ +S K E+ N R+A +I
Sbjct: 488 YMNEKNASEEEAREHVRSLIDQTWKMMNKEMMTSSFSK------YFVEVSANLARMAQWI 541
Query: 242 YLH-GDGHGAQ 251
Y H DG G Q
Sbjct: 542 YQHESDGFGMQ 552
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 159/262 (60%), Gaps = 7/262 (2%)
Query: 10 ALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYI 69
+ VT+IDDIYD+YGTLDEL+LFT AVERWD+N AI LPDYMK+CF ALYN ++E+A
Sbjct: 299 SFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AINDLPDYMKLCFLALYNTINEIAYDN 357
Query: 70 LKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYI 129
LK + + L + +W L AFL EAKW +NK PT ++Y NA S SGPL I AY
Sbjct: 358 LKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYF 417
Query: 130 SATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGAS 189
+ I ++E+E L+ D+I S I RL NDL ++S EI RG+ + S+ CYM G S
Sbjct: 418 AVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGIS 477
Query: 190 EEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHG 249
EE A E + +LI + WKK+ + S P + E +N R +H Y +GD H
Sbjct: 478 EELATESVMNLIDETWKKMNKEKLGGSLFAKPFV-----ETAINLARQSHCTYHNGDAHT 532
Query: 250 AQKQETMDEVFALLFQPI-PVE 270
+ + T V +++ +PI P E
Sbjct: 533 SPDELTRKRVLSVITEPILPFE 554
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 161/266 (60%), Gaps = 7/266 (2%)
Query: 2 RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNF 61
R++ L TVIDDIYD+YGTLDEL+LFT +RWD +I +LP YM++C++ ++N+
Sbjct: 288 RKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGVHNY 346
Query: 62 VSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGP 121
+S+ A ILK+ L ++ S + L++A+ EAKWYH+ Y P+L+EYL A +S++ P
Sbjct: 347 ISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASP 406
Query: 122 LITITAYISATNPIIEKE-LEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
I Y + N + ++ L D++ + ILRL +DLGTS E+ RGDV K+IQ
Sbjct: 407 AIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQ 466
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
CYM ET ASEE A EH+K LIR+ WK + + P N RVA F
Sbjct: 467 CYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGY-----PFPDGMVAGAANIGRVAQF 521
Query: 241 IYLHGDGHGAQKQETMDEVFALLFQP 266
IYLHGDG G Q +T + + LLF+P
Sbjct: 522 IYLHGDGFGVQHSKTYEHIAGLLFEP 547
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 10/272 (3%)
Query: 2 RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNF 61
R + T L TV+DD+YD YGTLDEL LFT AV RWD++F + LPDYMK+C+ Y+
Sbjct: 552 RFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFT-ENLPDYMKLCYQIYYDI 610
Query: 62 VSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGP 121
V EVA K+Q + + + W L + EA+W +Y PTL+EY+KN SI
Sbjct: 611 VHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQR 670
Query: 122 LITITAYISATNPIIEKE-LEYLE--SNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKS 178
++ ++ + ++ +E LE ++ L + +S I RL +D T E RG+++ S
Sbjct: 671 ILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASS 730
Query: 179 IQCYMHE-TGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRV 237
I+CYM + +EE A +HI ++ K++ + + D P K ++ RV
Sbjct: 731 IECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPD---DVPFACKK--MLFEETRV 785
Query: 238 AHFIYLHGDGHGAQKQETMDEVFALLFQPIPV 269
I+ GDG G K E D + L +P+P+
Sbjct: 786 TMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 147/269 (54%), Gaps = 11/269 (4%)
Query: 2 RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNF 61
R V T ++DD+YD +G+LD+L LFT +V+RWD++ + Q+P MKICF YN
Sbjct: 524 REVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSL-VDQMPQQMKICFVGFYNT 582
Query: 62 VSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIS-G 120
+++A ++Q D L I+N W L+A+ EA+W KY P+ EY++NA++SI+ G
Sbjct: 583 FNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALG 642
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
++ I+A + + ++ L ++ +Q RL+ND T E +G+V+ +IQ
Sbjct: 643 TVVLISALFTG-EVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQ 701
Query: 181 CYMHE-TGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAH 239
CYM + SEE A +H+ ++ +++ + N+K P +++ ++ R+
Sbjct: 702 CYMKDHPKISEEEALQHVYSVMENALEELNREFV---NNKIPDIYK---RLVFETARIMQ 755
Query: 240 FIYLHGDGHG-AQKQETMDEVFALLFQPI 267
Y+ GDG + E + V LFQP+
Sbjct: 756 LFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 139/267 (52%), Gaps = 6/267 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
R++LT A+ +++DD YD Y T +EL +T A+ERWDI I ++P+YMK + AL +
Sbjct: 292 GRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDEIPEYMKPSYKALLD 350
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
E+ + + ++ KN+ + L Q++LVEAKW Y P+ EE+ NA +
Sbjct: 351 VYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGY 410
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
++ IT+++ + + + ++ S+P +IQ S+ I R ++D+ + +R D +I+
Sbjct: 411 AMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIE 470
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
CYM E G + + A + + WK + + + + L ++ LN RV
Sbjct: 471 CYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRS-----LNLARVMDV 525
Query: 241 IYLHGDGHGAQKQETMDEVFALLFQPI 267
+Y GDG+ + + +LL +PI
Sbjct: 526 LYREGDGYTYVGKAAKGGITSLLIEPI 552
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 6/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R T G L + DD+ DI+ TLDEL FT V+RWD + + ++P+ M+ CF +
Sbjct: 492 TRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-LHEIPECMQTCFKVWFK 550
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ EV + ++K Q D L I+ W ++ E +W Y PT EEYLK A+S+
Sbjct: 551 LMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGL 610
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
T+ + + + +E + ++ + S RL ND T E RG + I
Sbjct: 611 GPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIA 670
Query: 181 CYMHET-GASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAH 239
CYM + GA+EE A +HI ++ + K+ + + SND + I N
Sbjct: 671 CYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSND----IPMGCKSFIFNLRLCVQ 726
Query: 240 FIYLHGDGHGAQKQETMDEVFALLFQPIPV 269
Y DG+G +E D + + PI V
Sbjct: 727 IFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 286 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 344
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 345 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 404
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 405 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 463
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 464 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 518
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 519 TYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 286 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 344
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 345 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 404
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 405 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 463
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 464 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 518
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 519 TYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 286 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 344
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 345 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 404
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 405 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 463
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 464 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 518
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 519 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 288 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 346
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 347 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 406
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 407 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 465
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 466 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 520
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 521 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 286 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 344
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 345 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 404
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 405 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 463
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 464 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 518
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 519 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 273 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 331
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 332 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 391
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 392 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 450
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 451 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 505
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 506 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 136/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 288 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 346
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 347 LYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 406
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
L+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 407 YLLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIE 465
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 466 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIIEV 520
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 521 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 286 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 344
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 345 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 404
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 405 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIE 463
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 464 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 518
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 519 TYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 8/270 (2%)
Query: 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
+R +L ++++++DD +D YGT+ EL+ +T A++RWDIN I +LPDYMKI + A+ +
Sbjct: 286 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILD 344
Query: 61 FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
+ + S + +++ + VE+ W+ Y P + EYL NA + +
Sbjct: 345 LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 404
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
+ T+Y+ + E++ E+L NP +++ S I R+++D T E RG ++ I+
Sbjct: 405 YYLATTSYLGMKSAT-EQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIE 463
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
C M + G S + A +++ WK + + R + P+ ILN R+
Sbjct: 464 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-----PVSTEFLTPILNLARIVEV 518
Query: 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269
Y+H DG+ ++ + LL I +
Sbjct: 519 TYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 182 YMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFI 241
Y +TG +E+ A++ K+L+ + VM C + D F++ N++ P+ V+ FI
Sbjct: 56 YASQTGTAEDYAKKFSKELVAKFNLNVM---CADVENYD---FESLNDV---PVIVSIFI 106
Query: 242 YLHGDG 247
+G+G
Sbjct: 107 STYGEG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,370,073
Number of Sequences: 62578
Number of extensions: 337670
Number of successful extensions: 892
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 22
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)