Query 038218
Match_columns 280
No_of_seqs 191 out of 800
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 7.2E-80 2.5E-84 599.7 24.7 263 1-269 292-554 (554)
2 3m00_A Aristolochene synthase; 100.0 7.6E-79 2.6E-83 592.1 24.7 262 1-269 288-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 7.1E-79 2.4E-83 593.4 23.5 262 1-268 290-551 (555)
4 1n1b_A (+)-bornyl diphosphate 100.0 1.7E-74 6E-79 564.4 23.9 262 1-268 287-549 (549)
5 2ong_A 4S-limonene synthase; m 100.0 5.4E-74 1.8E-78 561.0 26.0 262 1-268 281-543 (543)
6 3p5p_A Taxadiene synthase; cla 100.0 2.8E-74 9.5E-79 578.9 22.9 268 1-274 492-761 (764)
7 3sdr_A Alpha-bisabolene syntha 100.0 7E-74 2.4E-78 579.4 24.2 263 1-269 551-817 (817)
8 2j5c_A 1,8-cineole synthase; t 100.0 1.7E-73 6E-78 559.0 22.0 261 1-268 308-569 (569)
9 3s9v_A Abietadiene synthase, c 100.0 7.4E-73 2.5E-77 569.9 22.9 260 1-267 523-784 (785)
10 1ps1_A Pentalenene synthase; a 100.0 1.4E-46 4.8E-51 347.2 16.2 202 2-214 65-270 (337)
11 1di1_A Aristolochene synthase; 100.0 1.2E-44 4E-49 328.9 14.7 196 1-214 60-264 (300)
12 3kb9_A EPI-isozizaene synthase 100.0 3E-43 1E-47 331.2 13.8 203 2-213 105-311 (382)
13 3bny_A Aristolochene synthase; 100.0 7.4E-43 2.5E-47 320.2 15.0 196 1-214 74-278 (320)
14 3pya_A ENT-copalyl diphosphate 100.0 2.2E-35 7.4E-40 294.4 10.4 210 1-268 498-720 (727)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.7E-33 5.9E-38 268.1 14.2 197 4-208 178-386 (433)
16 1yyq_A Trichodiene synthase; t 99.7 7.2E-18 2.5E-22 157.6 10.0 186 3-208 87-273 (374)
17 3acx_A Dehydrosqualene synthas 93.1 3.3 0.00011 36.5 15.1 176 2-208 40-229 (293)
18 3ipi_A Geranyltranstransferase 92.9 1.1 3.9E-05 39.8 11.7 126 76-208 127-260 (295)
19 3lmd_A Geranylgeranyl pyrophos 92.4 1.2 4E-05 40.9 11.4 105 76-186 160-275 (360)
20 3oyr_A Trans-isoprenyl diphosp 92.1 6.1 0.00021 35.8 15.8 91 74-168 149-239 (345)
21 3rmg_A Octaprenyl-diphosphate 90.9 7.3 0.00025 35.1 14.9 89 74-167 131-220 (334)
22 3mzv_A Decaprenyl diphosphate 89.8 11 0.00038 34.0 15.5 108 74-186 137-255 (341)
23 4hd1_A Squalene synthase HPNC; 88.7 12 0.0004 32.9 17.2 155 2-192 41-199 (294)
24 3m0g_A Farnesyl diphosphate sy 88.2 2.9 9.9E-05 37.2 9.9 116 78-208 137-267 (297)
25 3ts7_A Geranyltranstransferase 87.5 5.8 0.0002 35.7 11.5 110 86-208 158-280 (324)
26 1wy0_A Geranylgeranyl pyrophos 85.7 7.9 0.00027 34.9 11.5 105 77-186 138-253 (342)
27 3p8l_A Geranyltranstransferase 85.5 5.2 0.00018 35.6 10.0 110 86-208 156-277 (302)
28 1rtr_A Geranyltranstransferase 85.3 3.2 0.00011 36.9 8.5 110 86-208 148-269 (301)
29 3lsn_A Geranyltranstransferase 85.0 7.4 0.00025 34.6 10.8 110 87-208 153-274 (304)
30 3apz_A Geranyl diphosphate syn 84.0 11 0.00036 34.1 11.6 90 74-167 151-240 (348)
31 3p8r_A Geranyltranstransferase 83.8 3.8 0.00013 36.4 8.3 110 86-208 158-280 (302)
32 3lom_A Geranyltranstransferase 83.5 9.4 0.00032 34.1 10.8 112 86-208 158-281 (313)
33 2ftz_A Geranyltranstransferase 83.3 7.2 0.00025 34.3 9.8 119 76-208 134-262 (284)
34 3pko_A Geranylgeranyl pyrophos 83.0 26 0.00088 31.4 13.9 105 76-186 143-259 (334)
35 4f62_A Geranyltranstransferase 82.8 8 0.00028 34.6 10.1 110 87-208 152-273 (317)
36 2h8o_A Geranyltranstransferase 82.6 6 0.00021 35.7 9.2 117 79-208 183-313 (335)
37 4dhd_A Polyprenyl synthetase; 79.3 11 0.00036 34.4 9.7 89 76-167 132-231 (358)
38 3npk_A Geranyltranstransferase 77.4 21 0.00073 31.4 10.9 117 79-208 136-264 (291)
39 3uca_A Geranyltranstransferase 76.7 12 0.00041 33.6 9.1 111 86-208 180-302 (324)
40 3pde_A Farnesyl-diphosphate sy 74.9 13 0.00046 33.1 8.9 110 86-208 155-276 (309)
41 1wmw_A Geranylgeranyl diphosph 74.0 15 0.00053 32.8 9.2 103 76-186 130-246 (330)
42 1rqj_A Geranyltranstransferase 73.4 15 0.0005 32.5 8.8 111 86-208 152-274 (299)
43 3nf2_A Putative polyprenyl syn 73.1 53 0.0018 29.6 15.9 106 77-187 144-260 (352)
44 3llw_A Geranyltranstransferase 72.9 11 0.00039 33.5 8.0 112 85-208 158-279 (311)
45 2j1p_A Geranylgeranyl pyrophos 70.3 6.4 0.00022 34.7 5.6 108 87-208 161-270 (293)
46 1uby_A FPS, farnesyl diphospha 66.5 21 0.00073 32.4 8.5 88 76-167 169-263 (367)
47 2q80_A Geranylgeranyl pyrophos 64.0 55 0.0019 28.7 10.5 86 74-167 109-195 (301)
48 2her_A Fragment, farnesyl pyro 63.7 18 0.00063 33.0 7.4 105 76-186 168-284 (368)
49 3aqb_B Component B of hexapren 60.2 45 0.0015 29.6 9.2 90 74-167 128-217 (325)
50 2e8v_A Geranylgeranyl pyrophos 59.3 43 0.0015 29.9 9.0 86 77-167 132-220 (340)
51 3lk5_A Geranylgeranyl pyrophos 59.2 1.1E+02 0.0036 27.9 13.1 79 83-167 182-263 (380)
52 3kra_B Geranyl diphosphate syn 58.7 16 0.00055 31.8 5.9 93 87-208 150-243 (274)
53 1yhl_A Farnesyl pyrophosphate 57.8 22 0.00076 32.1 6.9 107 76-187 151-285 (362)
54 2azj_A Geranylgeranyl pyrophos 56.1 42 0.0014 29.4 8.2 115 77-208 136-256 (289)
55 3tc1_A Octaprenyl pyrophosphat 52.2 1.2E+02 0.0043 26.6 13.7 102 75-186 121-235 (315)
56 3fau_A NEDD4-binding protein 2 48.0 16 0.00055 25.5 3.4 23 186-208 6-28 (82)
57 3vj8_A Squalene synthase; farn 47.9 1.5E+02 0.0052 26.4 14.9 116 82-208 117-243 (343)
58 3fx7_A Putative uncharacterize 47.9 46 0.0016 24.3 5.8 19 21-39 4-22 (94)
59 1v4e_A Octoprenyl-diphosphate 46.8 76 0.0026 27.8 8.4 84 74-167 125-210 (299)
60 2qis_A Farnesyl pyrophosphate 45.6 65 0.0022 29.2 8.0 106 76-186 176-298 (374)
61 1tr8_A Conserved protein (MTH1 38.0 21 0.00071 26.5 2.7 27 173-199 63-89 (102)
62 2zqe_A MUTS2 protein; alpha/be 32.1 42 0.0014 23.6 3.5 21 186-206 10-30 (83)
63 2d9i_A NEDD4-binding protein 2 30.8 40 0.0014 24.1 3.2 21 186-206 14-34 (96)
64 2q58_A Fragment, farnesyl pyro 29.6 27 0.00092 31.7 2.6 106 77-186 169-284 (368)
65 1d0q_A DNA primase; zinc-bindi 27.8 44 0.0015 24.3 3.1 28 173-200 65-92 (103)
66 1l1q_A Adenine phosphoribosylt 25.8 13 0.00045 30.1 -0.2 22 12-33 120-141 (186)
67 4akk_A Nitrate regulatory prot 24.3 43 0.0015 30.9 2.9 54 152-205 346-400 (423)
68 1vch_A Phosphoribosyltransfera 24.2 15 0.0005 29.2 -0.2 21 12-32 123-143 (175)
69 2ki0_A DS119; beta-alpha-beta, 23.6 70 0.0024 18.3 2.6 17 21-37 10-26 (36)
70 3emu_A Leucine rich repeat and 23.2 63 0.0022 25.1 3.4 23 177-199 103-126 (161)
71 1vdm_A Purine phosphoribosyltr 23.2 15 0.0005 28.5 -0.4 21 12-32 86-106 (153)
72 1nul_A XPRT, xanthine-guanine 22.6 22 0.00075 27.7 0.5 22 12-33 84-105 (152)
73 3qd7_X Uncharacterized protein 22.4 71 0.0024 24.7 3.5 36 170-207 39-74 (137)
74 1y0b_A Xanthine phosphoribosyl 22.1 17 0.00058 29.5 -0.3 22 12-33 123-144 (197)
75 1xri_A AT1G05000; structural g 20.6 66 0.0023 24.3 3.0 25 176-200 107-131 (151)
76 3dyh_A Farnesyl pyrophosphate 20.2 2.4E+02 0.0083 25.5 7.2 86 77-167 180-284 (390)
77 3okq_A BUD site selection prot 20.2 3.1E+02 0.011 21.3 7.1 78 10-99 25-102 (141)
78 1g2q_A Adenine phosphoribosylt 20.0 20 0.00068 28.9 -0.3 22 12-33 125-146 (187)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=7.2e-80 Score=599.71 Aligned_cols=263 Identities=29% Similarity=0.512 Sum_probs=246.6
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+++++|++.++.+++|+++++|
T Consensus 292 ~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~-~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~y 370 (554)
T 3g4d_A 292 GRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEY 370 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGG-GGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 59999999999999999999999999999999999999999 99999999999999999999999999988888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|++++++|++||+|+++||+||+||||+||.+|+|++++++++++++|+.+|+++++|+.++|+|+++++.++||+
T Consensus 371 lk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~ 450 (554)
T 3g4d_A 371 AKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFM 450 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~~ 240 (280)
|||+||++|+++|+++|+|+|||+|||+|+|+|+++++++++++||+| |+++++++ ++|++|+++++|++|++++
T Consensus 451 NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~l--N~e~l~~~---~~p~~~~~~~~NlaR~~~~ 525 (554)
T 3g4d_A 451 DDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDL--NQEFLKPT---EMPTEVLNRSLNLARVMDV 525 (554)
T ss_dssp HHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--HHHHSSSC---SSCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999887 8999999999999999999
Q ss_pred hcccCCCCCCCChhHHHHHHhhccccccc
Q 038218 241 IYLHGDGHGAQKQETMDEVFALLFQPIPV 269 (280)
Q Consensus 241 ~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~~ 269 (280)
+|+++||||.|+.++|++|++||++|||+
T Consensus 526 ~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 526 LYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 99999999998888999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=7.6e-79 Score=592.11 Aligned_cols=262 Identities=28% Similarity=0.533 Sum_probs=250.5
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+++++|++.++.++||+++++|
T Consensus 288 ~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~-~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~y 366 (550)
T 3m00_A 288 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCH 366 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHH
Confidence 59999999999999999999999999999999999999999 99999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|++++++|++||+|+++||+||+||||+||.+|+|++++++++++|+ +.+|+++++|+.++|+|+++++.++||+
T Consensus 367 lk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~ 445 (550)
T 3m00_A 367 AIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVI 445 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheee
Confidence 999999999999999999999999999999999999999999999998876 6799999999889999999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~~ 240 (280)
|||+||++|++||+++|+|+|||+|+|+|+|+|+++++++++++||+| |+++++++ ++|++|+++++|++|++++
T Consensus 446 NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~l--N~e~l~~~---~~p~~~~~~~~NlaR~~~~ 520 (550)
T 3m00_A 446 DDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDI--NEGLLRPT---PVSTEFLTPILNLARIIEV 520 (550)
T ss_dssp HHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--HHHTSSSC---SSCGGGTHHHHHHHHHHHH
T ss_pred ccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999887 8999999999999999999
Q ss_pred hcccC-CCCCCCChhHHHHHHhhccccccc
Q 038218 241 IYLHG-DGHGAQKQETMDEVFALLFQPIPV 269 (280)
Q Consensus 241 ~Y~~~-Dg~t~~~~~~k~~i~~l~~~pi~~ 269 (280)
+|+++ ||||.|+.++|++|++||++|||+
T Consensus 521 ~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 521 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 99998 999998778999999999999985
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=7.1e-79 Score=593.37 Aligned_cols=262 Identities=44% Similarity=0.717 Sum_probs=253.9
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||+|||+.||+||+|||++ ++++||+|||+||.+|+++++|++.++.++||+++++|
T Consensus 290 ~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~-~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~ 368 (555)
T 3n0f_A 290 CRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPY 368 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 59999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|+++++++.++||+
T Consensus 369 l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~ 448 (555)
T 3n0f_A 369 LTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLC 448 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~~ 240 (280)
|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+| |+++++++ ++|++|+++++|++|++++
T Consensus 449 NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~l--N~e~l~~~---~~p~~~~~~~~n~aR~~~~ 523 (555)
T 3n0f_A 449 NDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKM--NKEKLGGS---LFAKPFVETAINLARQSHC 523 (555)
T ss_dssp HHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--HHHHHSCC---SSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999876 8999999999999999999
Q ss_pred hcccCCCCCCCChhHHHHHHhhcccccc
Q 038218 241 IYLHGDGHGAQKQETMDEVFALLFQPIP 268 (280)
Q Consensus 241 ~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 268 (280)
+|+++||||.|+.++|++|++||++|||
T Consensus 524 ~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 524 TYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999998877899999999999997
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.7e-74 Score=564.44 Aligned_cols=262 Identities=44% Similarity=0.733 Sum_probs=244.4
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||++|++.||+||+|||.+ ++++||+|||+||.+++++++|++.++.+.+|++++.|
T Consensus 287 ~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~ 365 (549)
T 1n1b_A 287 QRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQY 365 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSS-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCcc-ccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 48999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHH-HhhcccChHHHHHHHHHHHH
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKE-LEYLESNPDLIQWSSRILRL 159 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~-~~~~~~~~~l~~~~~~i~rL 159 (280)
++++|++++++|++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++ ++|+.++|+++++++.++||
T Consensus 366 l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL 445 (549)
T 1n1b_A 366 LRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRL 445 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99988999999999999999
Q ss_pred hcCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhh
Q 038218 160 LNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAH 239 (280)
Q Consensus 160 ~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~ 239 (280)
+|||+||++|+++|+++|+|+|||+|||+|+|+|+++++++++++||++ |+++++++ ++|++|+++++|++|+++
T Consensus 446 ~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~l--n~e~l~~~---~vp~~~~~~~~n~~R~~~ 520 (549)
T 1n1b_A 446 PDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDM--NTAIAAGY---PFPDGMVAGAANIGRVAQ 520 (549)
T ss_dssp HHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHTCC---SSCHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCC---CCCHHHHHHHHHHHHeee
Confidence 9999999999999999999999999999999999999999999999999 99999877 899999999999999999
Q ss_pred hhcccCCCCCCCChhHHHHHHhhcccccc
Q 038218 240 FIYLHGDGHGAQKQETMDEVFALLFQPIP 268 (280)
Q Consensus 240 ~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 268 (280)
++|+++||||.|+.++|++|++||++|||
T Consensus 521 ~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 521 FIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred hheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999877899999999999997
No 5
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=5.4e-74 Score=561.02 Aligned_cols=262 Identities=42% Similarity=0.773 Sum_probs=256.4
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||++|++.||+||+|||.+ ++++||+|||+||.+++++++|++.++.+.||+++++|
T Consensus 281 ~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~ 359 (543)
T 2ong_A 281 ARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDIN-SIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPY 359 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSS-TTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCcc-ccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 48999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|++++++|++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++++|+.++|+++++++.++||+
T Consensus 360 l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~ 439 (543)
T 2ong_A 360 LRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLA 439 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCCCchhHHHHHHhHHhhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCR-ASNDKDPPLFQTKNEIILNPLRVAH 239 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~-l~~~~~~~~p~~~~~~~~n~~R~~~ 239 (280)
|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+| |+++ ++++ ++|++|+++++|++|+++
T Consensus 440 NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~l--n~e~~l~~~---~vp~~~~~~~~n~aR~~~ 514 (543)
T 2ong_A 440 DDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKM--NAERVSKDS---PFGKDFIGCAVDLGRMAQ 514 (543)
T ss_dssp HHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH--HHHHTCSSC---SSCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHhccCCC---CCCHHHHHHHHHHHHeeh
Confidence 999999999999999999999999999999999999999999999999 9999 9876 899999999999999999
Q ss_pred hhcccCCCCCCCChhHHHHHHhhcccccc
Q 038218 240 FIYLHGDGHGAQKQETMDEVFALLFQPIP 268 (280)
Q Consensus 240 ~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 268 (280)
++|+++||||.|+.++|++|++||++|||
T Consensus 515 ~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 515 LMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred hheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999877899999999999997
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.8e-74 Score=578.88 Aligned_cols=268 Identities=29% Similarity=0.493 Sum_probs=248.5
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||+|||+.||+||+|||++ ++++||+|||+||.+++++++|++.++.+++|+++++|
T Consensus 492 ~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~-~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~y 570 (764)
T 3p5p_A 492 TRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTS-LLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAH 570 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSST-TGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCch-hhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 59999999999999999999999999999999999999999 99999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.+++++|+.+|+++++|+..+|+|+++++.|+||+
T Consensus 571 l~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~ 650 (764)
T 3p5p_A 571 IRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLT 650 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999888889999999999999999876699999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCCCCCCchhHHHHHHhHHhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHET-GASEEAAREHIKDLIRQMWKKVMMDVCRAS-NDKDPPLFQTKNEIILNPLRVA 238 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~-~~~~~~~p~~~~~~~~n~~R~~ 238 (280)
|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+| |+++++ ++ .+|++|+++++|++|++
T Consensus 651 NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKel--n~e~l~~~~---~~p~~~~~~~~n~aR~~ 725 (764)
T 3p5p_A 651 NDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEA--SFEYFKPSN---DIPMGCKSFIFNLRLCV 725 (764)
T ss_dssp HHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH--HHHHHSCCS---SSCHHHHHHHHHTHHHH
T ss_pred hcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHhhCCC---CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999 999997 55 89999999999999999
Q ss_pred hhhcccCCCCCCCChhHHHHHHhhcccccccCCCcc
Q 038218 239 HFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTH 274 (280)
Q Consensus 239 ~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~~~~~~~ 274 (280)
++||+++||||.|+.++|++|++||++||++-+..|
T Consensus 726 ~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~~~~~~ 761 (764)
T 3p5p_A 726 QIFYKFIDGYGIANEEIKDYIRKVYIDPIQVGSHHH 761 (764)
T ss_dssp HHHSCC-------CCCHHHHHHHHHTCCCCC-----
T ss_pred HHHhcCCCCCCCCcHHHHHHHHHHHhcCCccCccCc
Confidence 999999999998876799999999999999855443
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=7e-74 Score=579.38 Aligned_cols=263 Identities=35% Similarity=0.581 Sum_probs=248.6
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|++++||+||+|||+|||+.||+||+|||++ ++++||+|||+||.+|+++++|++.++.++||+++++|
T Consensus 551 ~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~-~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~ 629 (817)
T 3sdr_A 551 CRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLS-FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSF 629 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCch-hhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 59999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHH-HHHHHHHhcCCCCCHHHHhhcc--cChHHHHHHHHHH
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPL-ITITAYISATNPIIEKELEYLE--SNPDLIQWSSRIL 157 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~-~~~~~~~~~g~~l~~e~~~~~~--~~~~l~~~~~~i~ 157 (280)
++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++..+++++|+.+|+++++|+. +.|+|+++++.|+
T Consensus 630 l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~ 709 (817)
T 3sdr_A 630 FRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLIS 709 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 8888888899999999999986 4559999999999
Q ss_pred HHhcCCCCChhhhhcCCCchhHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHh
Q 038218 158 RLLNDLGTSSDEIQRGDVSKSIQCYMHET-GASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLR 236 (280)
Q Consensus 158 rL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R 236 (280)
||+|||+||++|++||+++|+|+|||+|| |+|+|+|+++++++|+++||+| |+++++++ .+|++|+++++|++|
T Consensus 710 RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKel--n~e~l~~~---~~p~~~~~~~ln~aR 784 (817)
T 3sdr_A 710 RLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKEL--TREFLKPD---DVPFACKKMLFEETR 784 (817)
T ss_dssp HHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHH--HHHHHSCC---SSCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH--HHHHhCCC---CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7999999999999999999999 99999877 899999999999999
Q ss_pred hhhhhcccCCCCCCCChhHHHHHHhhccccccc
Q 038218 237 VAHFIYLHGDGHGAQKQETMDEVFALLFQPIPV 269 (280)
Q Consensus 237 ~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~~ 269 (280)
++++||+++||||.|+.++|++|++||++|||+
T Consensus 785 ~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 785 VTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999998778999999999999985
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.7e-73 Score=559.05 Aligned_cols=261 Identities=45% Similarity=0.753 Sum_probs=239.4
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|+|++||+||+|||++|++.||+||+|||.+ ++++||+|||+||.+++++++|++.++.+.||+++++|
T Consensus 308 ~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~ 386 (569)
T 2j5c_A 308 ERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE-SMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPY 386 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCcc-ccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 58999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|++++++|++||+|+.+||+||+||||++|.+|+|++++++++++++|+.+|+++++|+.++|+++++++.++||+
T Consensus 387 l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~ 466 (569)
T 2j5c_A 387 LRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLA 466 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~~ 240 (280)
|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+| |+++++ + ++|++|+++++|++|++++
T Consensus 467 NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~l--n~e~l~-~---~vp~~~~~~~~nlaR~~~~ 540 (569)
T 2j5c_A 467 DDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMM--NKEMMT-S---SFSKYFVEVSANLARMAQW 540 (569)
T ss_dssp HHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHH--HHHHHH-C---CSCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHHhc-c---CCCHHHHHHHHHHHheeeh
Confidence 999999999999999999999999999999999999999999999999 999998 6 8999999999999999999
Q ss_pred hcccC-CCCCCCChhHHHHHHhhcccccc
Q 038218 241 IYLHG-DGHGAQKQETMDEVFALLFQPIP 268 (280)
Q Consensus 241 ~Y~~~-Dg~t~~~~~~k~~i~~l~~~pi~ 268 (280)
+|+++ ||||.|+.++|++|++||++|||
T Consensus 541 ~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 541 IYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred hccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999 99999877899999999999997
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=7.4e-73 Score=569.90 Aligned_cols=260 Identities=31% Similarity=0.564 Sum_probs=248.7
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR 80 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~ 80 (280)
+|+++||+++|++++||+||+|||+|||+.||+||+|||++ ++++||+|||+||.+|+++++|++.++.+++|+++++|
T Consensus 523 ~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~-~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~y 601 (785)
T 3s9v_A 523 CREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLS-LVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGY 601 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSS-SGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCch-hhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 59999999999999999999999999999999999999999 99999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218 81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL 160 (280)
Q Consensus 81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 160 (280)
++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.+++++|+.+|+++++|+..+|+|+++++.|+||+
T Consensus 602 lk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~ 681 (785)
T 3s9v_A 602 IQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLV 681 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999866699999999999999
Q ss_pred cCCCCChhhhhcCCCchhHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhh
Q 038218 161 NDLGTSSDEIQRGDVSKSIQCYMHET-GASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAH 239 (280)
Q Consensus 161 NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~ 239 (280)
|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+| |++++++ .+|++|+++++|++|+++
T Consensus 682 NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKel--n~e~l~~----~~p~~~~~~~~n~aR~~~ 755 (785)
T 3s9v_A 682 NDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEEL--NREFVNN----KIPDIYKRLVFETARIMQ 755 (785)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH--HHHHHHS----CCCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH--HHHHhcC----CCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999 9999984 499999999999999999
Q ss_pred hhcccCCCCCCCCh-hHHHHHHhhccccc
Q 038218 240 FIYLHGDGHGAQKQ-ETMDEVFALLFQPI 267 (280)
Q Consensus 240 ~~Y~~~Dg~t~~~~-~~k~~i~~l~~~pi 267 (280)
+||+++||||.|+. ++|++|++||++||
T Consensus 756 ~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi 784 (785)
T 3s9v_A 756 LFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784 (785)
T ss_dssp HHTCCCC----CHHHHHHHHHHHHHTSCC
T ss_pred HHhcCCCCCCCCChHHHHHHHHHHhcccC
Confidence 99999999998865 69999999999998
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.4e-46 Score=347.24 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=185.0
Q ss_pred ch-hhhhhhhhHhhhhhcccCC--CCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchH
Q 038218 2 RR-VLTIAGALVTVIDDIYDIY--GTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQL 78 (280)
Q Consensus 2 R~-~~aK~~~l~~~iDD~yD~~--gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~ 78 (280)
|+ ++||+++|+|++||+||.+ ||++|++.|+++++||+.+ .+|++++++++++.+++++++.. .++...
T Consensus 65 rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~----~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~ 136 (337)
T 1ps1_A 65 DLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG----PLPDTAPPIAHGFADIWRRTCEG----MTPAWC 136 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS----CCCTTSCHHHHHHHHHHHHHHTT----SCHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC----CCCCCCChHHHHHHHHHHHHhcc----CCHHHH
Confidence 56 8999999999999999998 6999999999999999865 48999999999999999999765 355678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHH
Q 038218 79 LRIKNSWLGLLQAFLVEAKWYHNKYAP-TLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRIL 157 (280)
Q Consensus 79 ~~~~~~~~~~~~a~l~Ea~w~~~g~~P-s~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~ 157 (280)
.++++.|+++++++++||+|+.+|++| |++||+++|++|+|++++++++++++|..+|+++++++ .+++|.++++.++
T Consensus 137 ~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p-~~~~l~~~~~~i~ 215 (337)
T 1ps1_A 137 ARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSA-VMSAMLQIAVDVN 215 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhCh-HHHHHHHHHHHHH
Confidence 899999999999999999999999999 99999999999999999999999999999999999884 5789999999999
Q ss_pred HHhcCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038218 158 RLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCR 214 (280)
Q Consensus 158 rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~ 214 (280)
||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++.++++++||++ |+..
T Consensus 216 rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~--~~~~ 270 (337)
T 1ps1_A 216 LLLNDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQY--LLLE 270 (337)
T ss_dssp HHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999999999999999999999999999999999999999999999 8876
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.2e-44 Score=328.91 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=181.1
Q ss_pred Cch-hhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHH
Q 038218 1 SRR-VLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLL 79 (280)
Q Consensus 1 ~R~-~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~ 79 (280)
+|+ ++||+++|+|++||+||. |+++|++.|++++.||+.+ +.+|++++++++++++++++++..+. .
T Consensus 60 ~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~---~~lp~~~~~~~~~l~d~~~~~~~~~~--------~ 127 (300)
T 1di1_A 60 DRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG---DVLPDRTKPEEFILYDLWESMRAHDA--------E 127 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT---SSCCCTTCHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC---CCCCCCccHHHHHHHHHHHHHHhhCh--------H
Confidence 467 899999999999999999 8899999999999999875 47899999999999999999987762 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHH
Q 038218 80 RIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRL 159 (280)
Q Consensus 80 ~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL 159 (280)
+.++.|+.++++++ |++|+.+|++||++||+++|++|+|++++++++++++|..+|+++++ ..++|.++++.++||
T Consensus 128 ~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l 203 (300)
T 1di1_A 128 LANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSV 203 (300)
T ss_dssp HHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHH
Confidence 46677999999997 89999999999999999999999999999999999999999999998 378999999999999
Q ss_pred hcCCCCChhhhhcCC--------CchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038218 160 LNDLGTSSDEIQRGD--------VSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCR 214 (280)
Q Consensus 160 ~NDi~S~~~E~~~G~--------~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~ 214 (280)
+|||+||+||+++|+ ++|+|.|||+++|+|+|+|++++++++++.||++ |+..
T Consensus 204 ~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~--~~~~ 264 (300)
T 1di1_A 204 VNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPATKRVLWSMTREWETVH--DEIV 264 (300)
T ss_dssp HHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999999999 7799999999999999999999999999999999 8765
No 12
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=3e-43 Score=331.21 Aligned_cols=203 Identities=13% Similarity=0.034 Sum_probs=186.1
Q ss_pred ch-hhhhhhhhHhhhhhcccC--CC-CHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcch
Q 038218 2 RR-VLTIAGALVTVIDDIYDI--YG-TLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQ 77 (280)
Q Consensus 2 R~-~~aK~~~l~~~iDD~yD~--~g-t~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~ 77 (280)
|+ ++||+++|+|++||+||. +| ++++++.|++++.++- + ....+|++++++++++.+++++++..+ +...
T Consensus 105 rL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l-~-~~~~~p~~~~p~~~al~dl~~~~~~~~----~~~~ 178 (382)
T 3kb9_A 105 VLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTAL-D-SPGDHLHHEDTLVAGFADSVRRLYAFL----PATW 178 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-SCGGGTTCSSHHHHHHHHHHHHHTTSS----CHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHh-c-CCCCCCCCCChHHHHHHHHHHHHHccC----CHHH
Confidence 55 899999999999999997 66 9999999999999852 2 223368899999999999999997653 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHH
Q 038218 78 LLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRIL 157 (280)
Q Consensus 78 ~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~ 157 (280)
..+++++|++++++|++||+|+.+|++||++|||++|++|+|++++++++++++|..+|++++++ +.+++|.++++.++
T Consensus 179 ~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~ 257 (382)
T 3kb9_A 179 NARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFA 257 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999998 46889999999999
Q ss_pred HHhcCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 038218 158 RLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVC 213 (280)
Q Consensus 158 rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~ 213 (280)
||+|||+||+||+++|+++|+|.|||+++|+|+|+|+++++++++++||++ |+.
T Consensus 258 rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~--~~~ 311 (382)
T 3kb9_A 258 AWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEF--LAV 311 (382)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999 873
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=7.4e-43 Score=320.17 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=177.6
Q ss_pred Cch-hhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHH
Q 038218 1 SRR-VLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLL 79 (280)
Q Consensus 1 ~R~-~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~ 79 (280)
+|+ ++||+++|+|++||+||. ||++|++.|++++.||+.+ +.+|+++++++++++++++|++... + .
T Consensus 74 ~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~---~~~p~~~~~~~~al~d~~~e~~~~~-~-------~ 141 (320)
T 3bny_A 74 DRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG---DVLPDRSIPVEYIIYDLWESMRAHD-R-------E 141 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT---SSCCCTTSHHHHHHHHHHHHHHHHH-H-------H
T ss_pred HHHHHHHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC---CCCCCCcCHHHHHHHHHHHHHHhhC-H-------H
Confidence 467 899999999999999999 8999999999999999965 4689999999999999999998765 2 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHH
Q 038218 80 RIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRL 159 (280)
Q Consensus 80 ~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL 159 (280)
+.++.|+.++ ++++|++|+.+|++||++||+++|++|+|++++++++++++|..+|+++++ ++++|.++++.++||
T Consensus 142 ~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L 217 (320)
T 3bny_A 142 MADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSV 217 (320)
T ss_dssp HHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHH
Confidence 4555577777 599999999999999999999999999999999999999999999999998 378999999999999
Q ss_pred hcCCCCChhhhhcCC--------CchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038218 160 LNDLGTSSDEIQRGD--------VSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCR 214 (280)
Q Consensus 160 ~NDi~S~~~E~~~G~--------~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~ 214 (280)
+|||+||+||+++|+ ++|+|.|||+++|+|+|+|++++.+++++.|+++ |+..
T Consensus 218 ~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~--~~l~ 278 (320)
T 3bny_A 218 VNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRH--QLLV 278 (320)
T ss_dssp HHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred hcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999999998 7899999999999999999999999999999999 7654
No 14
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2.2e-35 Score=294.39 Aligned_cols=210 Identities=14% Similarity=0.087 Sum_probs=171.5
Q ss_pred CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchh--------hhhhc---CchH--HHHHHHHHHhhHHHHHH
Q 038218 1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDIN--------FAIKQ---LPDY--MKICFFALYNFVSEVAD 67 (280)
Q Consensus 1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~--------~~~~~---lp~~--mk~~~~~l~~~~~e~~~ 67 (280)
+|+++||++++++++||+||+|| |||++||+||+|||.+ .+.+. +|+| ||+||.+|+++++|++.
T Consensus 498 ~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~ 575 (727)
T 3pya_A 498 ERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSF 575 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999 9999999999999973 03333 3887 99999999999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccCh
Q 038218 68 YILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNP 147 (280)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~ 147 (280)
++.++||+++++|++++|.++++++++|++ + +| |. +++-.+.+.-|..+++ ++.+ +.|.
T Consensus 576 ~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~ 634 (727)
T 3pya_A 576 DLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFV 634 (727)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee-eeeeeeecCCCcchHh-hccC-hhHH
Confidence 999999999999999999999999999998 2 33 12 2223332323777888 7776 4688
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhH
Q 038218 148 DLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTK 227 (280)
Q Consensus 148 ~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~ 227 (280)
.|.++++.++||+||+.+|++|+ .+++.+.|+..|+++ ++.+++++++ .+|++|
T Consensus 635 ~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL--~~lVl~~~~~-~ip~~~ 688 (727)
T 3pya_A 635 RLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKM--VELALSESDT-FRDVSI 688 (727)
T ss_dssp HHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHH--HHHHHSCCTT-THHHHH
T ss_pred HHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHH--HHHHhccCCC-CCCCcc
Confidence 89999999999999999999977 557899999999999 9999986644 799999
Q ss_pred HHHHHhHHhhhhhhcccCCCCCCCChhHHHHHHhhcccccc
Q 038218 228 NEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIP 268 (280)
Q Consensus 228 ~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 268 (280)
|+.+|++.||.. ||+.| + |+.||.+++++||-
T Consensus 689 -----tf~~V~ksFYy~--ay~~p-~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 689 -----TFLDVAKAFYYF--ALCGD-H-LQTHISKVLFQKVG 720 (727)
T ss_dssp -----HHHHHHHHHHHH--HHHTT-S-CHHHHHHHHHSCCC
T ss_pred -----cHHHHHHHHHhh--hcCCH-H-HHHHHHHHHcCccc
Confidence 899999999986 99977 4 99999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=1.7e-33 Score=268.10 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=156.2
Q ss_pred hhhhhhhhHhhhhhc-ccCCC-CHHH-HHHHHH---HHHhcchhhhhhcCchH-----HHHHHHHHHhhHHHHHHHHHhc
Q 038218 4 VLTIAGALVTVIDDI-YDIYG-TLDE-LDLFTY---AVERWDINFAIKQLPDY-----MKICFFALYNFVSEVADYILKQ 72 (280)
Q Consensus 4 ~~aK~~~l~~~iDD~-yD~~g-t~eE-l~~~~~---ai~rWd~~~~~~~lp~~-----mk~~~~~l~~~~~e~~~~~~~~ 72 (280)
..+|++.|+|++||. +|..| +.+. ...+.. ++..... ..+.-|.. -.++..+++++++++...+.
T Consensus 178 l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~--~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~-- 253 (433)
T 3v1v_A 178 LATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHS--TAEYTPTWQASLAADAPRRAYDSAMGYFVRAAT-- 253 (433)
T ss_dssp HHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCC--CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhc--ccCCCCccccccCCchHHHHHHHHHHHHHhhcC--
Confidence 678999999999999 59755 3322 112222 1111110 01100100 12567899999999987643
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHH
Q 038218 73 QDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQW 152 (280)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~ 152 (280)
.....++++.|++++++|++||+|+.+|++||+||||++|++| |+.+++.++.+++|..+|++++++. .+++|.++
T Consensus 254 --~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~p-~~~~L~~~ 329 (433)
T 3v1v_A 254 --PSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHARP-DMQRVIAL 329 (433)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTSH-HHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhCc-hHHHHHHH
Confidence 3457889999999999999999999999999999999999999 6555556677889999999999984 57889999
Q ss_pred HHHHHHHhcCCCCChhhhhcC-CCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 153 SSRILRLLNDLGTSSDEIQRG-DVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 153 ~~~i~rL~NDi~S~~~E~~~G-~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
++.++||+|||+||+||+++| +++|+|.|||+++|+|+|+|++++.+++++.++++
T Consensus 330 ~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F 386 (433)
T 3v1v_A 330 AGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSF 386 (433)
T ss_dssp HHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995 78899999999999999999999999999999999
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.73 E-value=7.2e-18 Score=157.57 Aligned_cols=186 Identities=13% Similarity=-0.016 Sum_probs=141.9
Q ss_pred hhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHHHH
Q 038218 3 RVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIK 82 (280)
Q Consensus 3 ~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~ 82 (280)
..++++.+|+|++||++|..+ +++..|.+.+-+ .. .. + .++..++.+.+.++... -++.+..++.
T Consensus 87 ~liad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~--G~--~~---~--~Pl~~al~dl~~rl~~~----~~p~~~~rf~ 151 (374)
T 1yyq_A 87 ADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GR--EQ---A--HPWWALVNEHFPNVLRH----FGPFCSLNLI 151 (374)
T ss_dssp HHHHHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH--TC--CC---S--SHHHHHHHHHHHHHHTT----SCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCcH--HHHHHHHHHHhc--CC--CC---C--ChHHHHHHHHHHHHHHh----cCHHHHHHHH
Confidence 468999999999999999654 677778777654 22 11 1 26667777777776443 4666788899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHhcC
Q 038218 83 NSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLND 162 (280)
Q Consensus 83 ~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 162 (280)
++|.+++.++..|+.. .+..|+.++|...++.++|..-.... +.+...+.++... .+.+..++.....++.|+||
T Consensus 152 ~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~--~~~P~~~~~e~~~-~~~~~~~i~am~~~i~~~ND 226 (374)
T 1yyq_A 152 RSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA--SLWPKEQFNERSL-FLEITSAIAQMENWMVWVND 226 (374)
T ss_dssp HHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH--TTCCTTTCCTTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH--hhccccccchhhc-chhHHHHHHHHHHHHHhhhh
Confidence 9999999999999873 77789999999998888886533222 2122223212111 12244567777789999999
Q ss_pred CCCChhhhhc-CCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 163 LGTSSDEIQR-GDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 163 i~S~~~E~~~-G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
|.||.||... |+.+|.|.+++.++|+|.++|++++.+++..+..++
T Consensus 227 IlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~ 273 (374)
T 1yyq_A 227 LMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQM 273 (374)
T ss_dssp HHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999984 999999999999999999999999999999998888
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=93.10 E-value=3.3 Score=36.47 Aligned_cols=176 Identities=14% Similarity=0.112 Sum_probs=92.5
Q ss_pred chhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHh-cchhhhh--hcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchH
Q 038218 2 RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVER-WDINFAI--KQLPDYMKICFFALYNFVSEVADYILKQQDSDQL 78 (280)
Q Consensus 2 R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~r-Wd~~~~~--~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~ 78 (280)
|..+.-+-.+.-.+||+=|......+|+.+.+.+++ .+.. .. ...|+ .++..+|.+++.+. +.
T Consensus 40 R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~-~~~~~~~~~--~pv~~al~~~~~~~--------~l--- 105 (293)
T 3acx_A 40 RKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYP-YEYHHFQSD--RRIMMALQHVAQHK--------NI--- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCT-TSCCCCSSC--HHHHHHHHHHHHHS--------CC---
T ss_pred HHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCC-CcccCCCCC--CHHHHHHHHHHHHh--------CC---
Confidence 334455666777889999976544446666666654 1111 00 00022 36677777665543 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHH
Q 038218 79 LRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILR 158 (280)
Q Consensus 79 ~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~r 158 (280)
-++.+.+++.++-. +......+|++|+..+...+.|..-.+++-.+ |..-.++..+... .+..+.. +.-
T Consensus 106 --~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~~A~---~lG~AlQ-ltN 174 (293)
T 3acx_A 106 --AFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVAR---RLGESLQ-LIN 174 (293)
T ss_dssp --CHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHHHHH---HHHHHHH-HHH
T ss_pred --CHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHHHHH---HHHHHHH-HHH
Confidence 13446777888743 33345678999988888777775444444434 3321133333221 2222222 222
Q ss_pred HhcCCCCChhhhhcCCC--chhHHHHHhhCCCCHHHH---------HHHHHHHHHHHHHHh
Q 038218 159 LLNDLGTSSDEIQRGDV--SKSIQCYMHETGASEEAA---------REHIKDLIRQMWKKV 208 (280)
Q Consensus 159 L~NDi~S~~~E~~~G~~--~n~V~~yM~e~g~s~eeA---------~~~i~~~i~~~~k~l 208 (280)
++-|+ ....++|-+ +.-+ |.++|++.++- .+-+..++..+...+
T Consensus 175 ilRDv---~eD~~~gR~YLP~d~---l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~ 229 (293)
T 3acx_A 175 ILRDV---GEDFENERIYFSKQR---LKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDF 229 (293)
T ss_dssp HHHCH---HHHHHTTCCCSCHHH---HHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHhCCcEEeCHHH---HHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 33444 344556653 4433 66889998762 234555555555555
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=92.89 E-value=1.1 Score=39.80 Aligned_cols=126 Identities=8% Similarity=0.051 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSS 154 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~ 154 (280)
..+..+.+....++.+-..+..|... .||.++|++.-..-+|.-+..++-.-+ ++. .+++..+.+ .++.+..+
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag-~~~~~~~~l---~~~g~~lG 200 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG-AEEELAERF---SHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 45666777778889998888888643 489999998876666654433222111 122 455555543 36778888
Q ss_pred HHHHHhcCCCCChhhh-----hcCCCchhHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHh
Q 038218 155 RILRLLNDLGTSSDEI-----QRGDVSKSIQCYMHETGA--SEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 155 ~i~rL~NDi~S~~~E~-----~~G~~~n~V~~yM~e~g~--s~eeA~~~i~~~i~~~~k~l 208 (280)
...-+.||+..+.... ..|. .+...+|..+.+- ..+.|.+.+++.++++.+.+
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L 260 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETL 260 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999988775432 2333 3667677655421 14555555556666665555
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=92.44 E-value=1.2 Score=40.91 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSR 155 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 155 (280)
..+..+.+.+..++.+-..+..|.... ||.++|++.-..-+|..+..++-.-++--..+++..+.+ .++.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l---~~~g~~lG~ 234 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDAL---KNFGAAVGM 234 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 466778888999999999999987655 999999998766666544333221111112455555543 366777888
Q ss_pred HHHHhcCCCCChh-----------hhhcCCCchhHHHHHhhC
Q 038218 156 ILRLLNDLGTSSD-----------EIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 156 i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 186 (280)
.+-+.||+..+.. +.+.|.. +...+|..++
T Consensus 235 aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 235 IFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888888866542 2334543 6666665544
No 20
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=92.11 E-value=6.1 Score=35.81 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=61.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
...++..+.+....++.+-..+..|.. +..||.++|++.-..-+|.-+..++-.-++--..+++..+.+ .++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 149 SMKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHH
Confidence 445677788888899999999988853 345899999998776666544333221111112456555543 3677888
Q ss_pred HHHHHHhcCCCCChh
Q 038218 154 SRILRLLNDLGTSSD 168 (280)
Q Consensus 154 ~~i~rL~NDi~S~~~ 168 (280)
+...-+.||+..+..
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999988854
No 21
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=90.86 E-value=7.3 Score=35.08 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=60.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQW 152 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~ 152 (280)
...++..+.+....++.+-..+..|.. +..||.++|++.-..-+|..+..++-.-+ ++ ..+++..+.+ ..+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~ 205 (334)
T 3rmg_A 131 NYEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSV-QVGEEEVAFA---RLLGEY 205 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHH
Confidence 445677788889999999999998864 34589999999877666654433322111 12 2355555543 367788
Q ss_pred HHHHHHHhcCCCCCh
Q 038218 153 SSRILRLLNDLGTSS 167 (280)
Q Consensus 153 ~~~i~rL~NDi~S~~ 167 (280)
.+...-+.||+..+.
T Consensus 206 lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 206 IGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccCC
Confidence 888899999988775
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=89.83 E-value=11 Score=34.01 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=67.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
....+..+.+....++.+-..+..|.. +..||.++|++.-..-+|..+..++-.-+.--..+++..+.+ .++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 137 NMRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQAL---FDYGDAL 212 (341)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHH
Confidence 345667788888899999999999864 446899999988766666544333221111112455555543 3677888
Q ss_pred HHHHHHhcCCCCChh-----------hhhcCCCchhHHHHHhhC
Q 038218 154 SRILRLLNDLGTSSD-----------EIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 154 ~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 186 (280)
+...-+.||+..+.. +...|.. +...+|..+.
T Consensus 213 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 888888888877643 2334443 6655665444
No 23
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=88.72 E-value=12 Score=32.89 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=82.5
Q ss_pred chhhhhhhhhHhhhhhcccCCCC--HHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHH
Q 038218 2 RRVLTIAGALVTVIDDIYDIYGT--LDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLL 79 (280)
Q Consensus 2 R~~~aK~~~l~~~iDD~yD~~gt--~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~ 79 (280)
|..+.-+-.+.=.+||+=|.... ...|+.+-+.+++ ....-|. .|++.+|.+++.+..-
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~-----~~~g~~~--~pv~~al~~~~~~~~l------------ 101 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRR-----AFAGEAT--TPAFRALQFTIATCNL------------ 101 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHH-----HHHTCCC--SHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH-----HhcCCCC--CHHHHHHHHHHHHcCC------------
Confidence 34455566677789999996432 3345555555544 1122232 3677777777665421
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHH
Q 038218 80 RIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRL 159 (280)
Q Consensus 80 ~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL 159 (280)
-++.+.+++.++..... ....+|++|+..+...+.|..-.+++..+ |.. +++...... .+..+ -.++-+
T Consensus 102 -~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~~A~---~lG~A-lQltNi 170 (294)
T 4hd1_A 102 -PMEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERARLSD---ATCTA-LQVANH 170 (294)
T ss_dssp -CSHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHHHHH---HHHHH-HHHHHH
T ss_pred -CHHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHHHHH---HHHHH-HHHHHH
Confidence 12335667778755443 34568988888877777664433333333 432 233333211 12221 222233
Q ss_pred hcCCCCChhhhhcCCC--chhHHHHHhhCCCCHHH
Q 038218 160 LNDLGTSSDEIQRGDV--SKSIQCYMHETGASEEA 192 (280)
Q Consensus 160 ~NDi~S~~~E~~~G~~--~n~V~~yM~e~g~s~ee 192 (280)
+-|+ ..+.++|-+ +.- .|.++|+|.++
T Consensus 171 lRDv---~eD~~~gR~YlP~~---~l~~~gv~~~d 199 (294)
T 4hd1_A 171 MQDI---DRDLALGRIYVPRA---DLEQFGATLDD 199 (294)
T ss_dssp HHTH---HHHHHTTCBCSCHH---HHHTTTCCHHH
T ss_pred HHhc---hhhhccCceeCCHH---HHHHcCCCHHH
Confidence 3344 344556653 443 36788999876
No 24
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=88.24 E-value=2.9 Score=37.18 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=70.5
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHH--HHhcCCCCCHHHHhhcccChHHHHHH
Q 038218 78 LLRIKNSW--LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITA--YISATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 78 ~~~~~~~~--~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
+..+.+.. ..++.+-..+..|...+..||.++|++.-..-+|.-+..++- ....| .+++ . ..++....
T Consensus 137 ~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~---~---l~~~g~~l 208 (297)
T 3m0g_A 137 VAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG---P---LTAYATAL 208 (297)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHH
T ss_pred HHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH---H---HHHHHHHH
Confidence 34444444 568888888889976677899999999765555543322211 11112 2333 1 23577888
Q ss_pred HHHHHHhcCCCCChhhh-----------hcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 154 SRILRLLNDLGTSSDEI-----------QRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 154 ~~i~rL~NDi~S~~~E~-----------~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
+...-+.||+..+..+. +.|. .+.+.+| ..|.|.+..+++++++.+.+
T Consensus 209 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK-~T~p~l~------~l~~a~~~~~~~~~~A~~~L 267 (297)
T 3m0g_A 209 GLAFQIADDILDVEGNEEAAGKRLGKDAEAHK-ATFVSLL------GLAGAKSRAADLVAEAEAAL 267 (297)
T ss_dssp HHHHHHHTTCC----------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999886432 2222 2555444 35778888999999998887
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=87.47 E-value=5.8 Score=35.69 Aligned_cols=110 Identities=6% Similarity=0.063 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh--cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS--ATNPIIEKELEYLESNPDLIQWSSRILRLLNDL 163 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 163 (280)
..++.+-..+..|.. ..||.++|++.-..-+|.-+..++ ..| ++...+++..+.+ .++.+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRASV-RLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHH-HHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 457788888888754 378999999986555554433322 222 2222456655543 36777788888888888
Q ss_pred CCChh-----------hhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 164 GTSSD-----------EIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 164 ~S~~~-----------E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
..+.. +.+.|. .+.+.+| ..|.|.+.+++.++++.+.+
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L 280 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNK-PNYPALL------GLSGAKEKAEEMHEAALESL 280 (324)
T ss_dssp HHHTCC---------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 76542 223333 2556554 47889999999999888777
No 26
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=85.67 E-value=7.9 Score=34.86 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHH
Q 038218 77 QLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRI 156 (280)
Q Consensus 77 ~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 156 (280)
++..+.+....++.+-..+..|.... ..|.++|++.-..-+|..+..++..-+.--..+++..+.+ .++....+..
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 213 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKAL---SSWGRNVGIA 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 56667778889999999999997533 4599999998776666544333221111012456655543 3677888888
Q ss_pred HHHhcCCCCChh-----------hhhcCCCchhHHHHHhhC
Q 038218 157 LRLLNDLGTSSD-----------EIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 157 ~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 186 (280)
.-+.||+..+.- +...|.. +...+|..++
T Consensus 214 FQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 253 (342)
T 1wy0_A 214 FQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHHh
Confidence 999999877642 2233443 6666665553
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=85.47 E-value=5.2 Score=35.58 Aligned_cols=110 Identities=10% Similarity=0.025 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
..++.+-..+..|. +..||.++|.+.-..-+|.-+..++..-+ ++ ..+++..+.+ .++.+..+...-+.||+.
T Consensus 156 ~~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 156 QGMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFALIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677777777774 34789999998754444443322222111 12 2355555543 367778888888999887
Q ss_pred CChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+..+ .+.|.. +...+| ..+.|.+.+++.++++.+.+
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L 277 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVL 277 (302)
T ss_dssp HTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 76432 222332 445444 57889999999999998888
No 28
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=85.25 E-value=3.2 Score=36.87 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
..++.+-..+..|.. ..+|.++|++.-..-+|..+..++..-+ ++. .+++..+.+ .++....+...-+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDil 221 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEG--QPIDLETLEMIHKTKTGALLTFAVMSAADIAN-VDDTTKEHL---ESYSYHLGMMFQIKDDLL 221 (301)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHhchHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 567788888888754 3789999999877666654333222111 111 456655554 367788888999999998
Q ss_pred CChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+..+ .+.|. .+...+|- .+.|.+.+.+.++++.+.+
T Consensus 222 D~~~d~~~~GK~~g~Dl~~gK-~T~p~l~a------l~~a~~~a~~~~~~A~~~L 269 (301)
T 1rtr_A 222 DCYGDEAKLGKKVGSDLENNK-STYVSLLG------KDGAEDKLTYHRDAAVDEL 269 (301)
T ss_dssp HHHHHHCC--------------CCHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHhCCCcchHHHcCC-CcHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 76532 22233 25554543 5788888888888888877
No 29
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=85.05 E-value=7.4 Score=34.62 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCCC
Q 038218 87 GLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGT 165 (280)
Q Consensus 87 ~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 165 (280)
.++.+-..+..|.. ..||.++|.+.-..-+|.-+..++..-+ ++...+++..+.+ .++.+..+...-+.||+..
T Consensus 153 ~~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 153 GMVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp THHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 37778888888754 3589999998855444443332221111 2222255555543 3677888889999999988
Q ss_pred Chhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 166 SSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 166 ~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
+..+ .+.|. .+.+.+| ..|.|.+.+++.++++.+.+
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L 274 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDK-PTYPALL------GLAAAKEYALELRDQALHAL 274 (304)
T ss_dssp HHHHHHHC-------------CCHHHHH------CHHHHHHHHHHHHHHHHHHT
T ss_pred ccCChHHhCCCcccHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 7543 12232 2555554 57889999999999988877
No 30
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=84.02 E-value=11 Score=34.08 Aligned_cols=90 Identities=6% Similarity=0.016 Sum_probs=55.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
...++..+.+....++.+-..+..|.. +..+|.++|++.-..-+|..+..++-.-++--..+++..+.+ .++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 151 NTEVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHH
Confidence 344667777888889999888877643 235799999988655444433322221111112355555443 3566777
Q ss_pred HHHHHHhcCCCCCh
Q 038218 154 SRILRLLNDLGTSS 167 (280)
Q Consensus 154 ~~i~rL~NDi~S~~ 167 (280)
+...-+.||+..+.
T Consensus 227 G~aFQi~DD~lD~~ 240 (348)
T 3apz_A 227 GLAFQLIDDILDFT 240 (348)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc
Confidence 78888888887664
No 31
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=83.81 E-value=3.8 Score=36.44 Aligned_cols=110 Identities=10% Similarity=-0.003 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh--cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS--ATNPIIEKELEYLESNPDLIQWSSRILRLLNDL 163 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 163 (280)
..++.+-..+..|. +..||.++|++.-..-+|..+..++ ..| ++...+++..+. ..++.+..+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46778888888885 4578999999986555554433222 222 111122333332 235677778888888888
Q ss_pred CCChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 164 GTSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 164 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
..+..+ .+.|. .+...+| ..+.|.+.+++.++++.+.+
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L 280 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNK-STYPALL------GLEGAQQKAHTLLQEALLAL 280 (302)
T ss_dssp HHHTTC---------------C-CCHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCcchHHhcCC-chHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 765432 22333 2555554 36888888999999888887
No 32
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=83.53 E-value=9.4 Score=34.08 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCC-CCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNP-IIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~-l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
..++.+-..+..|... ..||.++|.+.-..-+|.-+..++-...++.. .+++..+.+ .++.+..+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4577888888887532 37899999988655445433322222223332 566665554 367778888888888887
Q ss_pred CChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+..+ .+.|.. +.+.+| ..+.|.+.+++.++++.+.+
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L 281 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSL 281 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 66432 223332 555443 47899999999999998777
No 33
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=83.35 E-value=7.2 Score=34.35 Aligned_cols=119 Identities=10% Similarity=0.039 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHH--HhcCCCCCHHHHhhcccChHHHHHH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAY--ISATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
.++..+.+....++.+-..+..|......||.++|++.-..-+|..+..++.. ...| .+++ . ..++.+..
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHH
Confidence 45677777888999999999999765447899999998766555443322221 1123 2333 2 23567788
Q ss_pred HHHHHHhcCCCCChhhh-hcCC-----C--chhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 154 SRILRLLNDLGTSSDEI-QRGD-----V--SKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 154 ~~i~rL~NDi~S~~~E~-~~G~-----~--~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
+...-+.||+..+..+. ..|. . .+...+| ..|.|.+.+++.++++.+.+
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L 262 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGI 262 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 88888899988875432 2232 1 2344333 36788899999999998888
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=83.00 E-value=26 Score=31.42 Aligned_cols=105 Identities=11% Similarity=0.027 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSS 154 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~ 154 (280)
..+..+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..++-.-+ ++. .+++..+.+ .++.+..+
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAG-APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 4566677888889999888888753 45689999998765555544332222111 122 355555543 35666777
Q ss_pred HHHHHhcCCCCChh-----------hhhcCCCchhHHHHHhhC
Q 038218 155 RILRLLNDLGTSSD-----------EIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 155 ~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 186 (280)
...-+.||+..+.. +...|.. +...+|..++
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 259 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLSH 259 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHHh
Confidence 77777787765431 3445554 6666665543
No 35
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=82.82 E-value=8 Score=34.63 Aligned_cols=110 Identities=9% Similarity=0.091 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCCC
Q 038218 87 GLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGT 165 (280)
Q Consensus 87 ~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 165 (280)
.++.+-..+..|. +..||.++|++.-..-+|.-+..++-.-+ ++...+++..+.+ .++.+..+...-+.||+..
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4677878777875 44599999998865555543332222111 2222456555543 3677888888889999877
Q ss_pred Chhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 166 SSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 166 ~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
+..+ .+.|. .+.+.+| ..|.|.+.+++.++++.+.+
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L 273 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQI 273 (317)
T ss_dssp TC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 6432 22233 2555555 46888999999999988887
No 36
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=82.56 E-value=6 Score=35.73 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=73.6
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHH
Q 038218 79 LRIKNSW--LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSR 155 (280)
Q Consensus 79 ~~~~~~~--~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 155 (280)
..+.+.. ..++.+-..+..|... .+|.++|++.-..-+|..+..++..-+ ++. .+++..+.+ .++-+..+.
T Consensus 183 ~~ls~a~g~~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag-a~~~~~~~l---~~~g~~lGl 256 (335)
T 2h8o_A 183 ISLARAAGIGGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG-SNQAERQRL---RLFGEKIGL 256 (335)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-CCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC-CCHHHHHHH---HHHHHHHHH
Confidence 3344444 5678888888888654 789999999877666644332222111 111 455655543 367778888
Q ss_pred HHHHhcCCCCChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 156 ILRLLNDLGTSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 156 i~rL~NDi~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
..-+.||+..+..+ .+.|. .+...+| ..|.|.+.+.+.++++.+.+
T Consensus 257 AFQI~DDiLD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L 313 (335)
T 2h8o_A 257 SFQLADDLLDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELL 313 (335)
T ss_dssp HHHHHHHHHHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 88889988766432 22333 2555444 36889999999999998887
No 37
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=79.32 E-value=11 Score=34.38 Aligned_cols=89 Identities=8% Similarity=0.015 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhc----------CCC-CCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcc
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYH----------NKY-APTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLE 144 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~----------~g~-~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~ 144 (280)
.++..+.+....++.+-..+..|.. .+. .||.++|++.-..-+|..+..++-.-++--..+++..+.+
T Consensus 132 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 132 LFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH-
Confidence 3567788888999999999999963 223 6799999998766666544333221111012455555543
Q ss_pred cChHHHHHHHHHHHHhcCCCCCh
Q 038218 145 SNPDLIQWSSRILRLLNDLGTSS 167 (280)
Q Consensus 145 ~~~~l~~~~~~i~rL~NDi~S~~ 167 (280)
.++.+..+...-+.||+..+.
T Consensus 211 --~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhc
Confidence 366777778888888876653
No 38
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=77.44 E-value=21 Score=31.37 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh--cCCCCCHHHHhhcccChHHHHHHH
Q 038218 79 LRIKNS--WLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS--ATNPIIEKELEYLESNPDLIQWSS 154 (280)
Q Consensus 79 ~~~~~~--~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~ 154 (280)
..+.+. ...++.+-..+..|. +..||.++|...-..-+|..+..++- .+ ++ ..+++..+.+ .++.+..+
T Consensus 136 ~~l~~~~g~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~~-~ga~la-ga~~~~~~~l---~~~g~~lG 208 (291)
T 3npk_A 136 KTLAFNAGLNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAALK-MGCEIC-ELNNEESNQI---YKLGLKLG 208 (291)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHH-HHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHHH-HHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 344444 556777777777774 45789999998865555544333222 22 12 2455554443 36778888
Q ss_pred HHHHHhcCCCCChhh-hhcCCC-------chhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 155 RILRLLNDLGTSSDE-IQRGDV-------SKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 155 ~i~rL~NDi~S~~~E-~~~G~~-------~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
...-+.||+..+..+ ...|.. .+.+.++ ..+.|.+..+++++++.+.+
T Consensus 209 laFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l 264 (291)
T 3npk_A 209 LIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDL 264 (291)
T ss_dssp HHHHHHHHHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHH
Confidence 888888988776532 222222 1333332 45778888888888888777
No 39
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=76.65 E-value=12 Score=33.61 Aligned_cols=111 Identities=8% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
..++.+-..+..|... ..||.++|.+.-..-+|.-+..++..-+ ++ ..+++..+.+ .++.+..+...-+.||+.
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDiL 254 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDIL 254 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4577888888887543 3689999998854444443332222111 12 2355555543 367777888888888886
Q ss_pred CChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+..+ .+.|. .+...+| ..+.|.+.+++.++++.+.+
T Consensus 255 D~~gd~~~~GK~~g~Dl~egK-~T~p~l~------al~~a~~~a~~~~~~A~~~L 302 (324)
T 3uca_A 255 DVVGNAKDLGKNVHKDQESNK-NNYITIF------GLEECKKKCVNITEECIEIL 302 (324)
T ss_dssp HHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCcchHhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 65321 22233 2455444 46889999999999998887
No 40
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=74.87 E-value=13 Score=33.05 Aligned_cols=110 Identities=7% Similarity=-0.069 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
..++.+-..+..|. +..||.++|...-..-+|.-+..++..-+ ++. .+++..+.+ .++.+..+...-+.||+.
T Consensus 155 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 155 SGMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ-APEAQWPAY---LQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp TTHHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCGGGHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777777774 44789999998855544443332222111 122 344444433 366777788888888887
Q ss_pred CChh-----------hhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSD-----------EIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~-----------E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+.. +...|.. +.+.+| ..+.|.+..+++++++.+.+
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l 276 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAAL 276 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHH
Confidence 6632 2223332 555444 45788888999999998887
No 41
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=73.97 E-value=15 Score=32.76 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCHHHHHhhcchhcchH-HHHHHHH--HhcCCCCCHHHHhhcccChHHHH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKW-YHNKYAPTLEEYLKNAALSISGP-LITITAY--ISATNPIIEKELEYLESNPDLIQ 151 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w-~~~g~~Ps~eEYl~~~~~s~g~~-~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~ 151 (280)
.++..+.+....++.+-..+..| ...+..||.++|++.-..-+|.. +..++.. ...|. +++.. + .++..
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~--l---~~~g~ 202 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA--Y---EEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH--H---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH--H---HHHHH
Confidence 45667888889999999999999 65435689999998876655544 3322221 11232 22222 2 25667
Q ss_pred HHHHHHHHhcCCCCCh----------hhhhcCCCchhHHHHHhhC
Q 038218 152 WSSRILRLLNDLGTSS----------DEIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 152 ~~~~i~rL~NDi~S~~----------~E~~~G~~~n~V~~yM~e~ 186 (280)
..+...-+.||+..+. .+...|.. +...+|..++
T Consensus 203 ~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 7777777777776653 23344543 6666665544
No 42
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=73.43 E-value=15 Score=32.48 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcC-CCCCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 86 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISAT-NPIIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 86 ~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g-~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
..++.+-..+..|... .+|.++|++.-..-+|..+..++..-++- -..+++..+.+ .++.+..+...-+.||+.
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l---~~~g~~lG~aFQi~DD~l 226 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVL---DKYAESIGLAFQVQDDIL 226 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667888888887543 78999999987665554433322211111 11244444433 467788888899999987
Q ss_pred CChhh-----------hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSDE-----------IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+..+ .+.|. .+...+| ..+.|.+.+++.++++.+.+
T Consensus 227 D~~~~~~~~GK~~g~Dl~~gK-~T~p~l~------~l~~a~~~~~~~~~~A~~~L 274 (299)
T 1rqj_A 227 DVVGDTATLGKRQGADQQLGK-STYPALL------GLEQARKKARDLIDDARQSL 274 (299)
T ss_dssp HHHSCHHHHSSCTTHHHHHTC-CCHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHHcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 76532 22333 2555444 34678888999999998888
No 43
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=73.07 E-value=53 Score=29.58 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHH
Q 038218 77 QLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRI 156 (280)
Q Consensus 77 ~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 156 (280)
++..+.+....++.+-..+..|... ..||.++|++.-..-+|..+..++-.-++--..+++..+.+ ..+.+..+..
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 219 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTL---EKYGYHLGLA 219 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 5667788889999999999998643 37899999998766666554333222111112456655543 3677888888
Q ss_pred HHHhcCCCCChh-----------hhhcCCCchhHHHHHhhCC
Q 038218 157 LRLLNDLGTSSD-----------EIQRGDVSKSIQCYMHETG 187 (280)
Q Consensus 157 ~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~g 187 (280)
+-+.||+..+-- +...|.. +..-+|..+++
T Consensus 220 FQi~DD~ld~~gd~~~~GK~~g~Dl~egK~-Tlpvi~al~~~ 260 (352)
T 3nf2_A 220 FQAVDDLLGIWGDPDATGKQTWSDLRQRKK-SLPVVAALAAG 260 (352)
T ss_dssp HHHHHHHHHHHCCHHHHSSCTTHHHHTTCC-CHHHHHHHHHC
T ss_pred HHHHHHHHhccCChhhhCCCcCcccccCCc-cHHHHHHHHhC
Confidence 888999876632 2233443 66556665553
No 44
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=72.93 E-value=11 Score=33.48 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHH-hhcccChHHHHHHHHHHHHhcC
Q 038218 85 WLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKEL-EYLESNPDLIQWSSRILRLLND 162 (280)
Q Consensus 85 ~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~-~~~~~~~~l~~~~~~i~rL~ND 162 (280)
...++.+-..+..|. +..||.++|+..-..-+|..+..++-.-+ ++. .+++.. +.+ .++.+..+...-+.||
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag-a~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG-IKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 356777877777775 56789999998865555543332221111 112 344444 443 3677788888889999
Q ss_pred CCCChhh-hhcCCC-------chhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 163 LGTSSDE-IQRGDV-------SKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 163 i~S~~~E-~~~G~~-------~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
+..+..+ ...|.. .+.+.++ ..|.|....+++++++.+.+
T Consensus 232 iLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l 279 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDL 279 (311)
T ss_dssp HHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 8776543 222332 1333222 45788888999999888887
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=70.31 E-value=6.4 Score=34.74 Aligned_cols=108 Identities=13% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCC-CCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCC
Q 038218 87 GLLQAFLVEAKWYHNK-YAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLG 164 (280)
Q Consensus 87 ~~~~a~l~Ea~w~~~g-~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 164 (280)
.++.+-..+..|...+ ..+|.++|...-..-+|..+..++..-+ ++. .+++..+.+ .++....+...-+.||+.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG-GSDEEIERL---RKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775322 3468899998854444433322221111 122 456655543 367788888899999988
Q ss_pred CChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 165 TSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 165 S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
.+..+. -.+...+| ..|.|.+.+.+.++++.+.+
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L 270 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQL 270 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 765433 23555444 46788888888888888777
No 46
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=66.46 E-value=21 Score=32.39 Aligned_cols=88 Identities=8% Similarity=-0.118 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHhhcchhcchH-HHHH--HHHHhcCCCCCHHHHhhcccChH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKY----APTLEEYLKNAALSISGP-LITI--TAYISATNPIIEKELEYLESNPD 148 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e~~~~~~~~~~ 148 (280)
.++..+.+....++.+-..+..|...+. .+|.++|+..-..-+|.. +..+ +.....| ..+++..+.+ .+
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~l---~~ 244 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHENA---KA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHHH---HH
Confidence 3566777888889999999999976553 589999998876655543 2221 1112123 1355555543 36
Q ss_pred HHHHHHHHHHHhcCCCCCh
Q 038218 149 LIQWSSRILRLLNDLGTSS 167 (280)
Q Consensus 149 l~~~~~~i~rL~NDi~S~~ 167 (280)
+....+...-+.||+..+.
T Consensus 245 ~g~~lG~aFQI~DD~LD~~ 263 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCF 263 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7778888888888887654
No 47
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=64.00 E-value=55 Score=28.70 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=58.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQW 152 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~ 152 (280)
....+..+.+.+..++.+-..+..|......||.++|++.-..-+|..+.+++...+ ++. .++ ...++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~ 180 (301)
T 2q80_A 109 HPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNT 180 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHH
Confidence 334566688888999999999999987666899999999877666644333322211 121 121 23467777
Q ss_pred HHHHHHHhcCCCCCh
Q 038218 153 SSRILRLLNDLGTSS 167 (280)
Q Consensus 153 ~~~i~rL~NDi~S~~ 167 (280)
.+...-+.||+..+.
T Consensus 181 lG~aFQi~DD~ld~~ 195 (301)
T 2q80_A 181 LGLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhc
Confidence 788888888886653
No 48
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=63.69 E-value=18 Score=32.98 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-HHHHhhcchhcchH-HHH--HHHHHhcCCCCCHHH--HhhcccChHH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTL-EEYLKNAALSISGP-LIT--ITAYISATNPIIEKE--LEYLESNPDL 149 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~-eEYl~~~~~s~g~~-~~~--~~~~~~~g~~l~~e~--~~~~~~~~~l 149 (280)
.++..+.+....++.+-..+..|...+..+++ ++|++.-..-+|.. +.. .+.....|. +++. .+. ..++
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~~~---l~~~ 242 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQLNL---IEAI 242 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSSTTT---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHHHH---HHHH
Confidence 35667888888999999999988766634555 99998866555543 221 111222232 2222 222 2356
Q ss_pred HHHHHHHHHHhcCCCCCh------hhhhcCCCchhHHHHHhhC
Q 038218 150 IQWSSRILRLLNDLGTSS------DEIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 150 ~~~~~~i~rL~NDi~S~~------~E~~~G~~~n~V~~yM~e~ 186 (280)
....+...-+.||+..+. .+...|.. +..-+|..++
T Consensus 243 g~~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~-T~pvi~al~~ 284 (368)
T 2her_A 243 LYKLGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSSCTTTTTCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHhCCcc-cHHHHHHHHh
Confidence 777778888888876653 22333432 5555554443
No 49
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=60.16 E-value=45 Score=29.60 Aligned_cols=90 Identities=8% Similarity=0.021 Sum_probs=61.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
....+..+.+....++.+-..+..|.. +..||.++|++.-..-+|..+..++-.-+.--..+++..+.+ .++....
T Consensus 128 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~l 203 (325)
T 3aqb_B 128 NSKFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCI 203 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHH
Confidence 334667778888899999999999864 336899999998776666554333322221112456555543 3677888
Q ss_pred HHHHHHhcCCCCCh
Q 038218 154 SRILRLLNDLGTSS 167 (280)
Q Consensus 154 ~~i~rL~NDi~S~~ 167 (280)
+...-+.||+..+.
T Consensus 204 G~afQi~DD~ld~~ 217 (325)
T 3aqb_B 204 GMSYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88888999987764
No 50
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=59.27 E-value=43 Score=29.93 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHH
Q 038218 77 QLLRIKNSWLGLLQAFLVEAKWYHNK--YAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWS 153 (280)
Q Consensus 77 ~~~~~~~~~~~~~~a~l~Ea~w~~~g--~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~ 153 (280)
.+..+.+....++.+-..+..|.... ..||.++|++.-..-+|..+.+++-.-+ ++. .+++ .+ ...++.+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~~---~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-GH---SLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-HH---HHHHHHHHH
Confidence 55667778888999999999998655 5789999999877666654333322111 111 2221 22 345778888
Q ss_pred HHHHHHhcCCCCCh
Q 038218 154 SRILRLLNDLGTSS 167 (280)
Q Consensus 154 ~~i~rL~NDi~S~~ 167 (280)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 207 GIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88999999987664
No 51
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=59.16 E-value=1.1e+02 Score=27.92 Aligned_cols=79 Identities=9% Similarity=-0.087 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchH-HHHHH--HHHhcCCCCCHHHHhhcccChHHHHHHHHHHHH
Q 038218 83 NSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGP-LITIT--AYISATNPIIEKELEYLESNPDLIQWSSRILRL 159 (280)
Q Consensus 83 ~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL 159 (280)
....+++.+-..+..|...+ .||.++|++.-..-+|.. +..++ .-...| .+++..+.+ ..+.+..+..+-+
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~l---~~~G~~lG~AFQI 255 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDAL---LHYGHDIGIAFQL 255 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHH
Confidence 33356778888888887644 679999999866555543 22111 111122 355555543 3677888888888
Q ss_pred hcCCCCCh
Q 038218 160 LNDLGTSS 167 (280)
Q Consensus 160 ~NDi~S~~ 167 (280)
.||+..+-
T Consensus 256 ~DDiLd~~ 263 (380)
T 3lk5_A 256 RDDLLGVF 263 (380)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 89887664
No 52
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=58.70 E-value=16 Score=31.82 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHHHHHHhcCCCC
Q 038218 87 GLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGT 165 (280)
Q Consensus 87 ~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 165 (280)
.++.+-..+..|.. ..||.++|...-..-+|.-+..++..-+ ++ ..+++..+.+ .++.+..+...-+.||+..
T Consensus 150 ~~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a~~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~~~ 223 (274)
T 3kra_B 150 GMISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACGAACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMKNS 223 (274)
T ss_dssp THHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 35667666666653 3799999998755544543332222111 12 2456555543 3677888899999999711
Q ss_pred ChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 038218 166 SSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 166 ~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
..|++.+.+.++.+.+.+.+
T Consensus 224 -----------------------~~~~~~~~~~~~~~~A~~~L 243 (274)
T 3kra_B 224 -----------------------HQLIDENIIGKLKELALEEL 243 (274)
T ss_dssp -----------------------SCCCCHHHHHHHHHHHHHHH
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHH
Confidence 22556667777777777776
No 53
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=57.80 E-value=22 Score=32.13 Aligned_cols=107 Identities=7% Similarity=-0.003 Sum_probs=65.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-----------cCCC----CCCHHHHHhhcchhcchH-HHHHH--HHHhcCCCCCH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWY-----------HNKY----APTLEEYLKNAALSISGP-LITIT--AYISATNPIIE 137 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~-----------~~g~----~Ps~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~ 137 (280)
.++..+.+....++.+-..+..|. ..|. .+|.++|++.-..-+|.. +..++ .....| ..++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~ 229 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCH
Confidence 456777788888999999999987 3233 489999999877655544 22221 112122 1233
Q ss_pred HHHhhcccChHHHHHHHHHHHHhcCCCCChhh----------hhcCCCchhHHHHHhhCC
Q 038218 138 KELEYLESNPDLIQWSSRILRLLNDLGTSSDE----------IQRGDVSKSIQCYMHETG 187 (280)
Q Consensus 138 e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E----------~~~G~~~n~V~~yM~e~g 187 (280)
+..+.+ .++....+...-+.||+..+.-+ ...|. .+..-+|..++.
T Consensus 230 ~~~~~l---~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK-~T~p~l~al~~~ 285 (362)
T 1yhl_A 230 VEMNLV---ERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAK-CSWLAVTFLGKA 285 (362)
T ss_dssp SCHHHH---HHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTC-CCHHHHHHHTTC
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCC-chHHHHHHHHhC
Confidence 333332 36777888888899998776432 22343 366666665543
No 54
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=56.14 E-value=42 Score=29.41 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHh-cCCCCCHHHHhhcccChHHHHHHHH
Q 038218 77 QLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYIS-ATNPIIEKELEYLESNPDLIQWSSR 155 (280)
Q Consensus 77 ~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 155 (280)
.+..+.+....++.+-..+..| .++|++.-..-+|..+..++..-+ ++ .+++..+.+ .++.+..+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 5566777777788887766554 688988766655544333222111 23 455544443 356777788
Q ss_pred HHHHhcCCCCChhh----hhcCCCchhHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHh
Q 038218 156 ILRLLNDLGTSSDE----IQRGDVSKSIQCYMHETGASEEAA-REHIKDLIRQMWKKV 208 (280)
Q Consensus 156 i~rL~NDi~S~~~E----~~~G~~~n~V~~yM~e~g~s~eeA-~~~i~~~i~~~~k~l 208 (280)
..-+.||+..+..+ ...|. .+...+| .+. +.++| ...+.+.++++.+.+
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~~~--g~~~a~~~~a~~~~~~A~~~L 256 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-REG--KLEEYVRSVYLEYKQKYDELI 256 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-TTT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-HcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 88888887665332 22232 4666666 323 45677 456777777777776
No 55
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=52.19 E-value=1.2e+02 Score=26.64 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHH--HhcCCCCCHHHHhhcccChHHHHH
Q 038218 75 SDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAY--ISATNPIIEKELEYLESNPDLIQW 152 (280)
Q Consensus 75 ~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~ 152 (280)
..++..+.+....++.+-..+..|.. +..||.++|++.-..-+|..+..++.. ...|.. . +. ...+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~---~~---l~~~g~~ 191 (315)
T 3tc1_A 121 ELIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--A---KI---YADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--H---HH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--H---HH---HHHHHHH
Confidence 34566677888899999999999864 346899999987666555443322221 112322 2 22 2356777
Q ss_pred HHHHHHHhcCCCCChh-----------hhhcCCCchhHHHHHhhC
Q 038218 153 SSRILRLLNDLGTSSD-----------EIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 153 ~~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 186 (280)
.+...-+.||+..+.- +...|. .+...+|..++
T Consensus 192 lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK-~T~p~i~al~~ 235 (315)
T 3tc1_A 192 FGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGK-TTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTC-CCHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccCCHHHhCCChhhHHHcCC-hhHHHHHHHHh
Confidence 7888888888877642 223343 26666666555
No 56
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=48.04 E-value=16 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 038218 186 TGASEEAAREHIKDLIRQMWKKV 208 (280)
Q Consensus 186 ~g~s~eeA~~~i~~~i~~~~k~l 208 (280)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999887654
No 57
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=47.88 E-value=1.5e+02 Score=26.37 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHhc
Q 038218 82 KNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLN 161 (280)
Q Consensus 82 ~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~N 161 (280)
.+..+.++.++.. +.. ...+|++|+..+-..+.|..-.+++-.++....-+. ..+. ........+...-+.|
T Consensus 117 ~~~~~~m~~gm~~---dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~---~~~~A~~lG~AlQltN 188 (343)
T 3vj8_A 117 ADICRRMGIGMAE---FLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGE---DTERANSMGLFLQKTN 188 (343)
T ss_dssp HHHHHHHHHHHHH---GGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhh---HHHHHHHHHHHHHHHH
Confidence 3444556666632 222 567898888888777777544444444443221111 1111 1123334444444444
Q ss_pred CCCCChhhhhcCCC--chhHHHHHhhCCCCHH---------HHHHHHHHHHHHHHHHh
Q 038218 162 DLGTSSDEIQRGDV--SKSIQCYMHETGASEE---------AAREHIKDLIRQMWKKV 208 (280)
Q Consensus 162 Di~S~~~E~~~G~~--~n~V~~yM~e~g~s~e---------eA~~~i~~~i~~~~k~l 208 (280)
=+.....+..+|-+ +.-+ |.++|++.+ .+..-+..++..+..-+
T Consensus 189 ilRDv~eD~~~gR~YlP~e~---l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~ 243 (343)
T 3vj8_A 189 IIRDYLEDQQGGREFWPQEV---WSRYVKKLGDFAKPENIDLAVQCLNELITNALHHI 243 (343)
T ss_dssp HHHTHHHHHHTTCCCSCHHH---HTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHhHHHHhCCCeeCCHHH---HHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 44444556666753 4433 667888875 34455566666665555
No 58
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=47.86 E-value=46 Score=24.27 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 038218 21 IYGTLDELDLFTYAVERWD 39 (280)
Q Consensus 21 ~~gt~eEl~~~~~ai~rWd 39 (280)
+.+.++|++.|..-+++..
T Consensus 4 a~~dpeElr~Fa~~L~~F~ 22 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERFK 22 (94)
T ss_dssp -CCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 3578999999998888744
No 59
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=46.80 E-value=76 Score=27.78 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=53.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHH--HHhcCCCCCHHHHhhcccChHHHH
Q 038218 74 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITA--YISATNPIIEKELEYLESNPDLIQ 151 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~ 151 (280)
....+..+.+....++.+-..+..|.... ||.++|++.-..-+|..+..++. ....|. +++.+ .++..
T Consensus 125 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~~l------~~~g~ 194 (299)
T 1v4e_A 125 NNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGEDL------YNLGV 194 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCHHH------HHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHHHH------HHHHH
Confidence 34567778888899999999999997644 99999998877655544332221 111232 21222 24556
Q ss_pred HHHHHHHHhcCCCCCh
Q 038218 152 WSSRILRLLNDLGTSS 167 (280)
Q Consensus 152 ~~~~i~rL~NDi~S~~ 167 (280)
..+...-+.||+..+.
T Consensus 195 ~lG~aFQi~DD~lD~~ 210 (299)
T 1v4e_A 195 TIGTIYQMFDDIMDFA 210 (299)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6666677777765543
No 60
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=45.57 E-value=65 Score=29.20 Aligned_cols=106 Identities=9% Similarity=-0.088 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHhhcchhcchH-HHHHH--HHHhcCCCCCHHHHhhcccChH
Q 038218 76 DQLLRIKNSWLGLLQAFLVEAKWYHNKY----APTLEEYLKNAALSISGP-LITIT--AYISATNPIIEKELEYLESNPD 148 (280)
Q Consensus 76 ~~~~~~~~~~~~~~~a~l~Ea~w~~~g~----~Ps~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~e~~~~~~~~~~ 148 (280)
.++..+.+....++.+-..+..|...+. .+|.++|+..-..-+|.. +..++ ... ++...+++..+.+ .+
T Consensus 176 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~-lag~a~~~~~~~l---~~ 251 (374)
T 2qis_A 176 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMY-MAGIDGEKEHANA---KK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTCCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHH-HcCCCcHHHHHHH---HH
Confidence 3566777888889999999999976544 389999999877655544 22221 112 2322455655543 36
Q ss_pred HHHHHHHHHHHhcCCCCChhh----------hhcCCCchhHHHHHhhC
Q 038218 149 LIQWSSRILRLLNDLGTSSDE----------IQRGDVSKSIQCYMHET 186 (280)
Q Consensus 149 l~~~~~~i~rL~NDi~S~~~E----------~~~G~~~n~V~~yM~e~ 186 (280)
+....+..+-+.||+..+..+ ...|. .+.+.++.-+.
T Consensus 252 ~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK-~T~p~l~al~~ 298 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNK-CSWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCC-ccHHHHHHHHh
Confidence 778888889999998776432 22333 36666665444
No 61
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=37.99 E-value=21 Score=26.47 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCCchhHHHHHhhCCCCHHHHHHHHHH
Q 038218 173 GDVSKSIQCYMHETGASEEAAREHIKD 199 (280)
Q Consensus 173 G~~~n~V~~yM~e~g~s~eeA~~~i~~ 199 (280)
|-...-|.+.|.|.|+|.++|++.+++
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 333456899999999999999988765
No 62
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=32.12 E-value=42 Score=23.55 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 038218 186 TGASEEAAREHIKDLIRQMWK 206 (280)
Q Consensus 186 ~g~s~eeA~~~i~~~i~~~~k 206 (280)
||++.+||...+.+.+.++..
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~ 30 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARA 30 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999998863
No 63
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=30.79 E-value=40 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 038218 186 TGASEEAAREHIKDLIRQMWK 206 (280)
Q Consensus 186 ~g~s~eeA~~~i~~~i~~~~k 206 (280)
||++.+||+..+.+.++++..
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~ 34 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTE 34 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998764
No 64
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=29.59 E-value=27 Score=31.73 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHhhcch-hcchH--HHHHHHHHhcCCCCCHHHHhhcccChHHHHH
Q 038218 77 QLLRIKNSWLGLLQAFLVEAKWYHNKYAP-TLEEYLKNAAL-SISGP--LITITAYISATNPIIEKELEYLESNPDLIQW 152 (280)
Q Consensus 77 ~~~~~~~~~~~~~~a~l~Ea~w~~~g~~P-s~eEYl~~~~~-s~g~~--~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~ 152 (280)
++..+.+.....+.+-..+-.|...+..+ |.++|++.-.. |.+.. ..+.......|...+++..+.+ ..+...
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l---~~~g~~ 245 (368)
T 2q58_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI---EAILYK 245 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH---HHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH---HHHHHH
Confidence 34455666667778888888887766654 78889987544 44331 1222222333434454443332 356777
Q ss_pred HHHHHHHhcCCCCChh------hhhcCCCchhHHHHHhhC
Q 038218 153 SSRILRLLNDLGTSSD------EIQRGDVSKSIQCYMHET 186 (280)
Q Consensus 153 ~~~i~rL~NDi~S~~~------E~~~G~~~n~V~~yM~e~ 186 (280)
.+..+-+.||+..+-. +.+.|.. +..-++.-++
T Consensus 246 lG~aFQI~DDiLD~~~gK~~g~Dl~egK~-T~p~i~al~~ 284 (368)
T 2q58_A 246 LGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCTTTSCCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHhhcccCCCCCchHhcCCc-HHHHHHHHHh
Confidence 7888888888876533 2334443 5554554444
No 65
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=27.84 E-value=44 Score=24.30 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.3
Q ss_pred CCCchhHHHHHhhCCCCHHHHHHHHHHH
Q 038218 173 GDVSKSIQCYMHETGASEEAAREHIKDL 200 (280)
Q Consensus 173 G~~~n~V~~yM~e~g~s~eeA~~~i~~~ 200 (280)
|...|+|..+|+-.|+|-.||++.+.+.
T Consensus 65 g~gGd~i~fv~~~~~~sf~eA~~~La~~ 92 (103)
T 1d0q_A 65 GAGGNAFTFLMDIEGIPFVEAAKRLAAK 92 (103)
T ss_dssp CCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4445889999988899999999988874
No 66
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=25.75 E-value=13 Score=30.06 Aligned_cols=22 Identities=27% Similarity=0.145 Sum_probs=17.7
Q ss_pred HhhhhhcccCCCCHHHHHHHHH
Q 038218 12 VTVIDDIYDIYGTLDELDLFTY 33 (280)
Q Consensus 12 ~~~iDD~yD~~gt~eEl~~~~~ 33 (280)
+.++||+++.++|+.++.....
T Consensus 120 VLLVDDVitTG~Tl~aa~~~L~ 141 (186)
T 1l1q_A 120 VLLHDDVLATGGTLLAAIELCE 141 (186)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEecccccHHHHHHHHHHHH
Confidence 5679999999999888765543
No 67
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=24.26 E-value=43 Score=30.91 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCChhhhh-cCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 038218 152 WSSRILRLLNDLGTSSDEIQ-RGDVSKSIQCYMHETGASEEAAREHIKDLIRQMW 205 (280)
Q Consensus 152 ~~~~i~rL~NDi~S~~~E~~-~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~ 205 (280)
....+.+|-+.+...+...+ |.-+.-+..+.|..+|+|+++|.+.+++.--+.-
T Consensus 346 ~~~~~~~l~~~~~~l~~~l~~r~~i~~Akg~lm~~~~~~e~~A~~~l~~~sm~~~ 400 (423)
T 4akk_A 346 QAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAMDKN 400 (423)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHcC
Confidence 33445555555555554433 3445677889999999999999999998765543
No 68
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=24.17 E-value=15 Score=29.21 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.8
Q ss_pred HhhhhhcccCCCCHHHHHHHH
Q 038218 12 VTVIDDIYDIYGTLDELDLFT 32 (280)
Q Consensus 12 ~~~iDD~yD~~gt~eEl~~~~ 32 (280)
+.++||+++.++|+.++....
T Consensus 123 VllVDDvitTG~Tl~~~~~~L 143 (175)
T 1vch_A 123 VVLVSDVVASGETMRAMEKMV 143 (175)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEeccccchHHHHHHHHHH
Confidence 567999999999988875543
No 69
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.63 E-value=70 Score=18.27 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHh
Q 038218 21 IYGTLDELDLFTYAVER 37 (280)
Q Consensus 21 ~~gt~eEl~~~~~ai~r 37 (280)
+.||+|||+.+-+...+
T Consensus 10 vggtpeelkklkeeakk 26 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKK 26 (36)
T ss_dssp BCCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 57899999998876654
No 70
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=23.23 E-value=63 Score=25.09 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=17.2
Q ss_pred hhHHH-HHhhCCCCHHHHHHHHHH
Q 038218 177 KSIQC-YMHETGASEEAAREHIKD 199 (280)
Q Consensus 177 n~V~~-yM~e~g~s~eeA~~~i~~ 199 (280)
..|.+ .|+.+|+|.++|++.++.
T Consensus 103 ~vv~ayLm~~~~~s~~~A~~~v~~ 126 (161)
T 3emu_A 103 AIVIAFLMYYQRLSFINAFNKVQG 126 (161)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444 456679999999998876
No 71
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=23.18 E-value=15 Score=28.46 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred HhhhhhcccCCCCHHHHHHHH
Q 038218 12 VTVIDDIYDIYGTLDELDLFT 32 (280)
Q Consensus 12 ~~~iDD~yD~~gt~eEl~~~~ 32 (280)
+.++||++|.++|+.++....
T Consensus 86 VllVDDvitTG~Tl~~a~~~L 106 (153)
T 1vdm_A 86 VVIVDDVSDTGKTLEVVIEEV 106 (153)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEecccCChHHHHHHHHHH
Confidence 457999999999988765544
No 72
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A*
Probab=22.64 E-value=22 Score=27.73 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=17.2
Q ss_pred HhhhhhcccCCCCHHHHHHHHH
Q 038218 12 VTVIDDIYDIYGTLDELDLFTY 33 (280)
Q Consensus 12 ~~~iDD~yD~~gt~eEl~~~~~ 33 (280)
+.++||+.|.++|+..+.....
T Consensus 84 VliVDDii~TG~Tl~~a~~~l~ 105 (152)
T 1nul_A 84 FIVIDDLVDTGGTAVAIREMYP 105 (152)
T ss_dssp EEEEEEEECTTSSHHHHHHHCT
T ss_pred EEEEEeecCchHHHHHHHHHHh
Confidence 4579999999999988655443
No 73
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=22.41 E-value=71 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=26.6
Q ss_pred hhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 038218 170 IQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKK 207 (280)
Q Consensus 170 ~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ 207 (280)
.++|... ++--.-=||++.+||...+.+.+.++...
T Consensus 39 Lr~G~~~--~~~~LDLHG~~~~EA~~~L~~fL~~a~~~ 74 (137)
T 3qd7_X 39 LRSGKYP--QQASLNLLRQPVEECRKMVFSFIQQALAD 74 (137)
T ss_dssp HHSCCCC--GGGEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCC--CCeEEECCCCCHHHHHHHHHHHHHHHHHC
Confidence 6778752 22333347999999999999999988643
No 74
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=22.14 E-value=17 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=17.6
Q ss_pred HhhhhhcccCCCCHHHHHHHHH
Q 038218 12 VTVIDDIYDIYGTLDELDLFTY 33 (280)
Q Consensus 12 ~~~iDD~yD~~gt~eEl~~~~~ 33 (280)
+.++||+++.++|+.++.....
T Consensus 123 VllVDDvitTG~Tl~~a~~~L~ 144 (197)
T 1y0b_A 123 VLIIDDFLANGQAAHGLVSIVK 144 (197)
T ss_dssp EEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEcccccCHHHHHHHHHHH
Confidence 5679999999999888765543
No 75
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=20.64 E-value=66 Score=24.29 Aligned_cols=25 Identities=4% Similarity=0.008 Sum_probs=20.5
Q ss_pred chhHHHHHhhCCCCHHHHHHHHHHH
Q 038218 176 SKSIQCYMHETGASEEAAREHIKDL 200 (280)
Q Consensus 176 ~n~V~~yM~e~g~s~eeA~~~i~~~ 200 (280)
.-.+.|||...|+|.++|++.++..
T Consensus 107 g~~~a~~l~~~g~~~~~a~~~~~~~ 131 (151)
T 1xri_A 107 GCLVGCLRKLQKWCLTSIFDEYQRF 131 (151)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4667889998899999999877653
No 76
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=20.24 E-value=2.4e+02 Score=25.52 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-----------CC----CCCCHHHHHhhcchhcchH-HH--HHHHHHhcCCCCCHH
Q 038218 77 QLLRIKNSWLGLLQAFLVEAKWYH-----------NK----YAPTLEEYLKNAALSISGP-LI--TITAYISATNPIIEK 138 (280)
Q Consensus 77 ~~~~~~~~~~~~~~a~l~Ea~w~~-----------~g----~~Ps~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e 138 (280)
.+..+.+.....+.+-..+..|.. .+ ..+|+++|+..-..-+|.. +. +.+..+..| .+++
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~lag--a~~~ 257 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSE--ALPT 257 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcC--CChH
Confidence 456666777888888888888831 11 3589999998866655543 21 111112123 2222
Q ss_pred H-HhhcccChHHHHHHHHHHHHhcCCCCCh
Q 038218 139 E-LEYLESNPDLIQWSSRILRLLNDLGTSS 167 (280)
Q Consensus 139 ~-~~~~~~~~~l~~~~~~i~rL~NDi~S~~ 167 (280)
. .+. ..++.+..+..+-+.||+..+.
T Consensus 258 ~~~~~---l~~~g~~lGlaFQI~DDiLD~~ 284 (390)
T 3dyh_A 258 VDMGV---TEELAMLMGEYFQVQDDVMDCF 284 (390)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 1 222 2356777788888888887654
No 77
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.15 E-value=3.1e+02 Score=21.31 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=44.4
Q ss_pred hhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 038218 10 ALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLL 89 (280)
Q Consensus 10 ~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (280)
.+++-+||+=| +.|+|+. +.+.| .+.-.|..++.+..-+-.+-.++...-.- =...-+.+++.|..=+
T Consensus 25 ~LvtkVDDLQD---~VE~LRk--DV~~R-----gvrP~~~ql~~v~kdi~~a~~eL~~m~~~--i~~ekP~WKKiWE~EL 92 (141)
T 3okq_A 25 TLLSKVDDLQD---VIEIMRK--DVAER-----RSQPAKKKLETVSKDLENAQADVLKLQEF--IDTEKPHWKKTWEAEL 92 (141)
T ss_dssp HHHHHHHHHHH---HHHHHHH--HHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHH---HHHHHHH--HHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCchhHHHHHHHH
Confidence 46666777655 2333322 22334 34556777877777776666665432110 0012356888888888
Q ss_pred HHHHHHHHHh
Q 038218 90 QAFLVEAKWY 99 (280)
Q Consensus 90 ~a~l~Ea~w~ 99 (280)
.....|..-.
T Consensus 93 ~~VceEQqfl 102 (141)
T 3okq_A 93 DKVCEEQQFL 102 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 78
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=20.03 E-value=20 Score=28.94 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.3
Q ss_pred HhhhhhcccCCCCHHHHHHHHH
Q 038218 12 VTVIDDIYDIYGTLDELDLFTY 33 (280)
Q Consensus 12 ~~~iDD~yD~~gt~eEl~~~~~ 33 (280)
+.++||+++.++|+.++.....
T Consensus 125 VLlVDDvitTG~Tl~~~~~~L~ 146 (187)
T 1g2q_A 125 VIIVDDIIATGGSAAAAGELVE 146 (187)
T ss_dssp EEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHH
Confidence 4579999999999888755443
Done!