BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038219
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/408 (54%), Positives = 290/408 (71%), Gaps = 15/408 (3%)
Query: 33 ALALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSA 92
AL + V KD+STLQY+T I QRTPLV L +DLGG+FLWVDCDQ YVS++Y+P RC ++
Sbjct: 8 ALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTS 67
Query: 93 QCKLARSKSCIDEYSCSPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGK 152
QC L+ S +C D ++ P PGCNN+TC FP N + +T GE+A DVVS++S D
Sbjct: 68 QCSLSGSIACGDCFN-GPRPGCNNNTCGVFPENPVINTATG-GEVAEDVVSVESTD---- 121
Query: 153 ANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNFDRKFSIC 212
+ G+ V+VP IFSC PT LL LA+GV GMAGLGRT+++LPSQF++AF+F RKF++C
Sbjct: 122 GSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 213 LSSSTTSNGAVFFGDVPF---PNIDVS-KSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268
LS ST+SN + FG+ P+ PNI VS K+L YTPL+ NPV + +G+PS +YFI +
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSK-ALLFNIP 327
KSI I +V LNTSLLSI+ G GGTK+ST +PYTVLETSIYKA E F K + NI
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 328 RVKPIAPFGACFNSSFI----GGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAF 383
RV +APFGACF++ I G + P I LVL + VW I G+NSMV + + +CL
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 384 VDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSSSLLSWQTTCSKL 431
VDGG N RTS+VIGG+QLEDNL++F+LA SR+GFS +LL +TTC+
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/408 (54%), Positives = 290/408 (71%), Gaps = 15/408 (3%)
Query: 33 ALALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSA 92
AL + V KD+STLQY+T I QRTPLV L +DLGG+FLWVDCDQ YVS++Y+P RC ++
Sbjct: 8 ALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTS 67
Query: 93 QCKLARSKSCIDEYSCSPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGK 152
QC L+ S +C D ++ P PGCNN+TC FP N + +T GE+A DVVS++S D
Sbjct: 68 QCSLSGSIACGDCFN-GPRPGCNNNTCGVFPENPVINTATG-GEVAEDVVSVESTD---- 121
Query: 153 ANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNFDRKFSIC 212
+ G+ V+VP IFSC PT LL LA+GV GMAGLGRT+++LPSQF++AF+F RKF++C
Sbjct: 122 GSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 213 LSSSTTSNGAVFFGDVPF---PNIDVS-KSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268
LS ST+SN + FG+ P+ PNI VS K+L YTPL+ NPV + +G+PS +YFI +
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSK-ALLFNIP 327
KSI I +V LNTSLLSI+ G GGTK+ST +PYTVLETSIYKA E F K + NI
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 328 RVKPIAPFGACFNSSFI----GGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAF 383
RV +APFGACF++ I G + P I LVL + VW I G+NSMV + + +CL
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 384 VDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSSSLLSWQTTCSKL 431
VDGG N RTS+VIGG+QLEDNL++F+LA SR+GFS +LL +TTC+
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 156/407 (38%), Positives = 230/407 (56%), Gaps = 28/407 (6%)
Query: 34 LALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQ 93
+ L V D ST + +++RTPL+ V + +DL G LWV+C+Q Y S +Y+ C S Q
Sbjct: 10 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 69
Query: 94 CKLARSKSCIDEYSCSPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKA 153
C A + C+ + S PGC+ +TC N I+++ T GEL DV++I + G
Sbjct: 70 CSRANTHQCLSCPAAS-RPGCHKNTCGLMSTNPITQQ-TGLGELGEDVLAIHATQ--GST 125
Query: 154 NPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAGLGRTQVSLPSQFSAAFNFDRKFSIC 212
G V+VP +FSC P+FL+ GL +G+AGLG +SLP+Q ++ F R+F+ C
Sbjct: 126 QQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTC 185
Query: 213 LSSSTTSNGAVFFGDVP-----FPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIE 267
LS TS GA+ FGD P F N D+ L +TPL + +G+ Y +
Sbjct: 186 LSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTI--------TLQGE----YNVR 233
Query: 268 IKSILIGGN-VVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNI 326
+ SI I + V PLN +I +GGT +ST+ P+ VL+ S+Y+AF + F++ L
Sbjct: 234 VNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQA 293
Query: 327 PRVKPIAPFGACFNSSFIGGTTAPEIHLVLPG-NNRVWKIYGANSMVRVGKDAMCLAFVD 385
+VK +APFG CFNS+ I P + LV+ N VW+I G + MV+ CL ++
Sbjct: 294 -QVKSVAPFGLCFNSNKINA--YPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMN 350
Query: 386 GGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFS-SSLLSWQTTCSKL 431
GG+ PR + +G QLE+NL+ F+LA+SR+GFS SSL S C+ L
Sbjct: 351 GGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADL 397
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 189/406 (46%), Gaps = 67/406 (16%)
Query: 38 VSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLA 97
V+KD +T Y LV LD+ G +W CD G C S C LA
Sbjct: 7 VTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCDGGQPPAEIP---CSSPTCLLA 58
Query: 98 RSKSCIDEYSCSPGPGC---------NNHTCSRFPANSISRESTNRGELATDVVSIQSID 148
+ P PGC ++ C+ +P N +S + G L+ + D
Sbjct: 59 NAY---------PAPGCPAPSCGSDKHDKPCTAYPYNPVS-GACAAGSLSHTRFVANTTD 108
Query: 149 IDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNFDRK 208
+ P V+V ++ +C P+ LL L G G+AGL + ++LP+Q ++A +
Sbjct: 109 ----GSKPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANR 163
Query: 209 FSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268
F +CL T G FG P P ++S+ YTPL+ G P+ ++I
Sbjct: 164 FLLCL--PTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTK---------GGSPA--HYISA 210
Query: 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFN--- 325
+SI++G VP+ L+ GG +ST PY +L +Y+ ++ F+KAL
Sbjct: 211 RSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHAN 265
Query: 326 ---IPR-VKPIAPFGACFNSSF----IGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKD 377
+ R V+ +APFG C+++ +GG P + L L G + W + G NSMV V +
Sbjct: 266 GAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTMTGKNSMVDVKQG 324
Query: 378 AMCLAFVD-----GGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFS 418
C+AFV+ G +V++GG Q+ED +L+F++ K RLGFS
Sbjct: 325 TACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 189/405 (46%), Gaps = 67/405 (16%)
Query: 38 VSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLA 97
V+KD++T Y LV LD+ G +W C+ G C S C LA
Sbjct: 9 VTKDTATSLYTIPFHDGASLV-----LDVAGLLVWSTCEGGQSPAEIA---CSSPTCLLA 60
Query: 98 RSKSCIDEYSCSPGPGC---------NNHTCSRFPANSISRESTNRGELATDVVSIQSID 148
+ P PGC ++ C+ +P+N ++ + G L + + D
Sbjct: 61 NAY---------PAPGCPAPSCGSDRHDKPCTAYPSNPVT-GACAAGSLFHTRFAANTTD 110
Query: 149 IDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNFDRK 208
N P V+V ++ +C P+ LL L G G+AGL + ++LPSQ ++A K
Sbjct: 111 ----GNKPVSEVNV-RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNK 165
Query: 209 FSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268
F +CL T G FG P P ++S+ YTPL+ A G P+ ++I
Sbjct: 166 FLLCL--PTGGPGVAIFGGGPLPWPQFTQSMDYTPLV---------AKGGSPA--HYISA 212
Query: 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFN--- 325
+SI + VP++ L+ GG +ST PY +L +Y+ ++ F+KAL
Sbjct: 213 RSIKVENTRVPISERALA-----TGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPAN 267
Query: 326 ---IPR-VKPIAPFGACFNSSFI----GGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKD 377
+ R VKP+APF C+++ + GG P + L L G + W + G NSMV V
Sbjct: 268 GAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSD-WAMTGKNSMVDVKPG 326
Query: 378 AMCLAF-----VDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGF 417
C+AF VD G +V++GG Q+ED +L+F++ K RLGF
Sbjct: 327 TACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 185/406 (45%), Gaps = 67/406 (16%)
Query: 38 VSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLA 97
V+KD +T Y LV LD+ G +W C G C S C LA
Sbjct: 7 VTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCKGGQPPAEIP---CSSPTCLLA 58
Query: 98 RSKSCIDEYSCSPGPGC---------NNHTCSRFPANSISRESTNRGELATDVVSIQSID 148
+ P PGC ++ C+ +P N +S + G L+ + D
Sbjct: 59 NAY---------PAPGCPAPSCGSDKHDKPCTAYPYNPVS-GACAAGSLSHTRFVANTTD 108
Query: 149 IDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNFDRK 208
+ P V+V ++ +C P+ LL L G G+AGL + ++LP+Q ++A +
Sbjct: 109 ----GSKPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANR 163
Query: 209 FSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268
F +CL T G FG P P ++S+ YTPL+ G P+ ++I
Sbjct: 164 FLLCL--PTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTK---------GGSPA--HYISA 210
Query: 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFN--- 325
+SI++G VP+ L+ GG +ST PY +L +Y+ ++ F+KAL
Sbjct: 211 RSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHAN 265
Query: 326 ----IPRVKPIAPFGACFNSSF----IGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKD 377
V +APFG C+++ +GG P + L L G + W + G NSMV V +
Sbjct: 266 GAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTMTGKNSMVDVKQG 324
Query: 378 AMCLAFVD-----GGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFS 418
C+AFV+ G +V++GG Q+ED +L+F++ K RLGFS
Sbjct: 325 TACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 59/257 (22%)
Query: 46 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDE 105
QY T I TP K+ LD G LWV ++ CGS C L S D
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNE-----------CGSLACFL---HSKYDH 59
Query: 106 YSCSPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFV---SV 162
+ S ++ S+ G ++ D +SI + I P F S
Sbjct: 60 EASSSYKANGTEFAIQYGTGSL------EGYISQDTLSIGDLTI-----PKQDFAEATSE 108
Query: 163 PNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNF-------DRKFSICL-- 213
P L F+ G G+ GLG +S+ +N +++F+ L
Sbjct: 109 PGLTFAFGK----------FDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGD 158
Query: 214 SSSTTSNGAVFFGDVPFPNIDVSK---SLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKS 270
+S T NG G+ F ID SK + + P+ + F+G D + E++S
Sbjct: 159 TSKDTENG----GEATFGGIDESKFKGDITWLPVRRKAYWE--VKFEGIGLGDEYAELES 212
Query: 271 ILIGGNVVPLNTSLLSI 287
G + TSL+++
Sbjct: 213 ---HGAAIDTGTSLITL 226
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 59/257 (22%)
Query: 46 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDE 105
QY T I TP K+ LD G LWV ++ CGS C L S D
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNE-----------CGSLACFL---HSKYDH 59
Query: 106 YSCSPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFV---SV 162
+ S ++ S+ G ++ D +SI + I P F S
Sbjct: 60 EASSSYKANGTEFAIQYGTGSL------EGYISQDTLSIGDLTI-----PKQDFAEATSE 108
Query: 163 PNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNF-------DRKFSICL-- 213
P L F+ G G+ GLG +S+ +N +++F+ L
Sbjct: 109 PGLTFAFGK----------FDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGD 158
Query: 214 SSSTTSNGAVFFGDVPFPNIDVSK---SLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKS 270
+S T NG G+ F ID SK + + P+ + F+G D + E++S
Sbjct: 159 TSKDTENG----GEATFGGIDESKFKGDITWLPVRRKAYWE--VKFEGIGLGDEYAELES 212
Query: 271 ILIGGNVVPLNTSLLSI 287
G + TSL+++
Sbjct: 213 ---HGAAIDTGTSLITL 226
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 59/257 (22%)
Query: 46 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDE 105
QY T I TP K+ LD G LWV ++ CGS C L S D
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNE-----------CGSLACFL---HSKYDH 59
Query: 106 YSCSPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFV---SV 162
+ S ++ S+ G ++ D +SI + I P F S
Sbjct: 60 EASSSYKANGTEFAIQYGTGSL------EGYISQDTLSIGDLTI-----PKQDFAEATSE 108
Query: 163 PNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNF-------DRKFSICL-- 213
P L F+ G G+ GLG +S+ +N +++F+ L
Sbjct: 109 PGLTFAFGK----------FDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGD 158
Query: 214 SSSTTSNGAVFFGDVPFPNIDVSK---SLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKS 270
+S T NG G+ F ID SK + + P+ + F+G D + E++S
Sbjct: 159 TSKDTENG----GEATFGGIDESKFKGDITWLPVRRKAYWE--VKFEGIGLGDEYAELES 212
Query: 271 ILIGGNVVPLNTSLLSI 287
G + TSL+++
Sbjct: 213 ---HGAAIDTGTSLITL 226
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 264 YFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALL 323
Y IEI + IGG + L+ + +K V + L ++ A +E ++A L
Sbjct: 197 YQIEILKLEIGGQSLNLDCREYNADK-----AIVDSGTTLLRLPQKVFDAVVEAVARASL 251
Query: 324 FNIPRVKPIAPFG---ACFNSSFIGGTTAPEIHLVLPGNN--RVWKI-----YGANSMVR 373
IP G AC+ +S + P+I + L N R ++I M+
Sbjct: 252 --IPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMG 309
Query: 374 VGKDAMCLAFVDGGVNPRT-SVVIGGYQLEDNLLEFNLAKSRLGFSSS 420
G + C F G++P T ++VIG +E + F+ A+ R+GF++S
Sbjct: 310 AGLNYECYRF---GISPSTNALVIGATVMEGFYVIFDRAQKRVGFAAS 354
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCID 104
+ Y+ + +P L +D G W+ D+ YV TS A
Sbjct: 12 VDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGSFSGT 71
Query: 105 EYSCSPGPGCNNHTCSRFPANSISRESTNRGELATD-VVSIQSIDIDGKANPPGQFVSVP 163
EY+ + G P SI S + G D ++ + +D+ P S+P
Sbjct: 72 EYTDTVTLG-----SLTIPKQSIGVASRDSGFDGVDGILGVGPVDLTVGTLSPHTSTSIP 126
Query: 164 NL---IFSCG--PTFLL 175
+ +FS G PT LL
Sbjct: 127 TVTDNLFSQGTIPTNLL 143
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 338 CFNSSFIGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAFVDGGV 388
C +++ G T +I+ G+N+ W++ S+V V + +CL V GG
Sbjct: 365 CLDAAGTGNGTKVQIYSCWGGDNQKWRLNSDGSIVGV-QSGLCLDAVGGGT 414
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 338 CFNSSFIGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAFVDGGV 388
C +++ G T +I+ G+N+ W++ S+V V + +CL V GG
Sbjct: 365 CLDAAGTGNGTKVQIYSCWGGDNQKWRLNSDGSIVGV-QSGLCLDAVGGGT 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,604,121
Number of Sequences: 62578
Number of extensions: 525808
Number of successful extensions: 1135
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 22
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)